Query 019890
Match_columns 334
No_of_seqs 368 out of 1793
Neff 5.5
Searched_HMMs 46136
Date Fri Mar 29 05:21:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019890.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019890hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2672 Lipoate synthase [Coen 100.0 9E-103 2E-107 731.2 21.2 291 42-334 19-331 (360)
2 COG0320 LipA Lipoate synthase 100.0 4.5E-95 1E-99 679.1 22.6 254 73-334 19-288 (306)
3 PTZ00413 lipoate synthase; Pro 100.0 8.5E-88 1.8E-92 658.4 29.3 298 37-334 47-370 (398)
4 PLN02428 lipoic acid synthase 100.0 3.7E-82 8.1E-87 617.4 30.2 294 37-334 13-322 (349)
5 TIGR00510 lipA lipoate synthas 100.0 3.4E-79 7.3E-84 587.9 27.7 258 70-334 9-282 (302)
6 PRK12928 lipoyl synthase; Prov 100.0 9.6E-71 2.1E-75 526.7 27.1 253 74-334 10-279 (290)
7 PRK05481 lipoyl synthase; Prov 100.0 1.2E-55 2.6E-60 422.0 27.8 252 75-334 4-271 (289)
8 COG0621 MiaB 2-methylthioadeni 100.0 1.1E-31 2.3E-36 269.1 22.8 232 88-328 100-368 (437)
9 COG0502 BioB Biotin synthase a 99.9 1.3E-26 2.8E-31 225.2 16.5 184 129-326 50-256 (335)
10 PRK08508 biotin synthase; Prov 99.9 5.2E-25 1.1E-29 209.6 20.1 183 136-326 14-214 (279)
11 TIGR03700 mena_SCO4494 putativ 99.9 5.5E-25 1.2E-29 215.5 17.5 190 132-327 51-271 (351)
12 PRK05927 hypothetical protein; 99.9 1.6E-24 3.4E-29 212.8 16.7 227 86-326 3-267 (350)
13 PRK08444 hypothetical protein; 99.9 2.8E-24 6E-29 211.3 18.0 187 133-327 53-270 (353)
14 PRK14332 (dimethylallyl)adenos 99.9 5.4E-24 1.2E-28 215.0 20.2 187 129-318 154-361 (449)
15 PRK14340 (dimethylallyl)adenos 99.9 4.7E-24 1E-28 215.2 19.6 198 129-328 149-372 (445)
16 PRK14327 (dimethylallyl)adenos 99.9 7E-24 1.5E-28 217.2 21.0 199 128-328 211-435 (509)
17 TIGR03550 F420_cofG 7,8-dideme 99.9 3.7E-24 8.1E-29 207.4 16.8 189 130-326 5-230 (322)
18 PRK14339 (dimethylallyl)adenos 99.9 1.4E-23 3E-28 210.2 20.8 187 128-317 126-338 (420)
19 PRK15108 biotin synthase; Prov 99.9 1.1E-23 2.4E-28 206.3 19.4 187 130-326 43-249 (345)
20 PRK14336 (dimethylallyl)adenos 99.9 3E-23 6.4E-28 207.8 20.6 197 129-328 124-348 (418)
21 PRK14337 (dimethylallyl)adenos 99.9 5.6E-23 1.2E-27 207.2 20.4 198 128-328 147-372 (446)
22 PRK14329 (dimethylallyl)adenos 99.9 5.6E-23 1.2E-27 208.5 20.4 199 128-328 167-397 (467)
23 PRK14335 (dimethylallyl)adenos 99.9 7.8E-23 1.7E-27 206.7 20.3 199 128-328 151-381 (455)
24 PRK09240 thiH thiamine biosynt 99.9 7.4E-23 1.6E-27 202.1 19.1 188 133-326 78-286 (371)
25 PRK08445 hypothetical protein; 99.9 6.4E-23 1.4E-27 201.2 17.7 221 93-327 7-267 (348)
26 PLN02389 biotin synthase 99.9 7.6E-23 1.7E-27 202.8 18.2 189 130-326 83-291 (379)
27 PRK05926 hypothetical protein; 99.9 1.2E-22 2.6E-27 200.9 18.9 184 135-327 74-292 (370)
28 TIGR00423 radical SAM domain p 99.9 8.6E-23 1.9E-27 196.5 17.1 189 131-327 7-229 (309)
29 PRK14330 (dimethylallyl)adenos 99.9 2.5E-22 5.4E-27 201.6 20.7 197 129-328 140-364 (434)
30 PRK14328 (dimethylallyl)adenos 99.9 1.5E-22 3.2E-27 203.6 18.9 197 129-328 147-370 (439)
31 TIGR01574 miaB-methiolase tRNA 99.9 2.2E-22 4.7E-27 202.4 19.7 197 129-328 145-370 (438)
32 PRK14331 (dimethylallyl)adenos 99.9 2.4E-22 5.2E-27 202.0 19.9 198 128-328 145-368 (437)
33 PRK06256 biotin synthase; Vali 99.9 6.8E-22 1.5E-26 191.5 21.6 191 131-328 59-267 (336)
34 PRK14333 (dimethylallyl)adenos 99.9 3.3E-22 7.1E-27 201.7 19.7 187 129-318 148-364 (448)
35 TIGR01579 MiaB-like-C MiaB-lik 99.9 4.4E-22 9.5E-27 198.3 20.0 197 129-328 138-361 (414)
36 TIGR03699 mena_SCO4550 menaqui 99.9 4.2E-22 9.1E-27 193.6 19.4 184 135-326 47-261 (340)
37 PRK14862 rimO ribosomal protei 99.9 4.3E-22 9.4E-27 200.6 20.0 185 129-317 139-354 (440)
38 PRK07094 biotin synthase; Prov 99.9 9.9E-22 2.1E-26 189.2 21.0 163 130-300 40-218 (323)
39 PRK14326 (dimethylallyl)adenos 99.9 8.4E-22 1.8E-26 201.6 21.0 186 129-317 157-365 (502)
40 TIGR01578 MiaB-like-B MiaB-lik 99.9 1E-21 2.2E-26 196.7 20.8 196 129-328 133-355 (420)
41 PRK14338 (dimethylallyl)adenos 99.9 2.2E-21 4.8E-26 196.4 22.3 217 89-317 123-367 (459)
42 TIGR01125 MiaB-like tRNA modif 99.9 1.2E-21 2.7E-26 196.2 19.6 189 129-319 135-345 (430)
43 TIGR02351 thiH thiazole biosyn 99.9 6.3E-22 1.4E-26 195.1 17.1 183 133-321 77-280 (366)
44 TIGR00089 RNA modification enz 99.9 2.9E-21 6.4E-26 193.2 19.8 186 129-317 139-347 (429)
45 PRK14325 (dimethylallyl)adenos 99.9 4.5E-21 9.6E-26 193.0 21.1 187 129-318 147-358 (444)
46 PRK07360 FO synthase subunit 2 99.9 1.8E-21 4E-26 192.1 17.3 160 133-300 64-253 (371)
47 PRK06245 cofG FO synthase subu 99.9 6.9E-21 1.5E-25 184.8 19.5 191 132-327 15-237 (336)
48 PRK14334 (dimethylallyl)adenos 99.9 4.9E-21 1.1E-25 192.8 19.1 189 128-318 137-346 (440)
49 TIGR03551 F420_cofH 7,8-dideme 99.9 7.5E-21 1.6E-25 185.6 19.5 185 133-326 43-263 (343)
50 PRK09234 fbiC FO synthase; Rev 99.9 2.1E-20 4.5E-25 201.0 20.3 189 132-326 74-299 (843)
51 PRK09613 thiH thiamine biosynt 99.9 2.6E-20 5.6E-25 189.2 19.7 191 129-326 84-305 (469)
52 PRK09234 fbiC FO synthase; Rev 99.8 5.3E-20 1.2E-24 197.8 18.2 219 91-326 488-750 (843)
53 TIGR00433 bioB biotin syntheta 99.8 1.3E-19 2.9E-24 171.7 18.3 189 131-327 30-235 (296)
54 PRK06267 hypothetical protein; 99.8 1.3E-18 2.9E-23 170.7 19.1 187 130-326 28-231 (350)
55 COG1060 ThiH Thiamine biosynth 99.8 5.4E-19 1.2E-23 174.9 16.3 188 132-327 62-282 (370)
56 KOG2900 Biotin synthase [Coenz 99.8 4.2E-19 9E-24 166.4 5.0 163 130-299 84-267 (380)
57 KOG2492 CDK5 activator-binding 99.7 6.9E-18 1.5E-22 166.3 11.9 189 126-316 217-451 (552)
58 smart00729 Elp3 Elongator prot 99.7 4.4E-16 9.5E-21 136.0 14.1 167 131-304 3-195 (216)
59 PRK00955 hypothetical protein; 99.7 1.3E-15 2.7E-20 158.9 16.7 197 129-328 292-557 (620)
60 PRK01254 hypothetical protein; 99.7 2.6E-15 5.6E-20 156.7 16.7 164 129-296 372-592 (707)
61 cd01335 Radical_SAM Radical SA 99.5 1.5E-13 3.3E-18 118.1 14.9 160 134-301 2-180 (204)
62 TIGR03471 HpnJ hopanoid biosyn 99.5 1.5E-13 3.2E-18 139.4 17.2 160 132-299 199-375 (472)
63 TIGR02026 BchE magnesium-proto 99.5 2.2E-13 4.8E-18 139.4 16.7 162 130-299 194-375 (497)
64 KOG4355 Predicted Fe-S oxidore 99.5 1.2E-13 2.5E-18 135.9 13.7 192 130-323 188-402 (547)
65 PRK08207 coproporphyrinogen II 99.5 2.6E-13 5.7E-18 138.9 16.6 166 130-303 165-363 (488)
66 PRK08599 coproporphyrinogen II 99.5 2.2E-13 4.7E-18 134.4 15.4 168 129-304 2-195 (377)
67 PRK05799 coproporphyrinogen II 99.5 7.3E-13 1.6E-17 130.4 15.4 161 137-304 11-194 (374)
68 PRK05904 coproporphyrinogen II 99.5 2.7E-12 5.8E-17 126.5 17.7 185 137-328 14-222 (353)
69 PRK09249 coproporphyrinogen II 99.4 2E-12 4.3E-17 130.9 16.6 164 129-300 50-241 (453)
70 TIGR00538 hemN oxygen-independ 99.4 2.2E-12 4.7E-17 130.7 16.5 193 130-330 51-276 (455)
71 PRK05660 HemN family oxidoredu 99.4 3.8E-12 8.3E-17 126.2 17.9 161 137-304 14-202 (378)
72 TIGR01212 radical SAM protein, 99.4 2.8E-12 6E-17 123.8 16.3 154 141-303 38-220 (302)
73 PF04055 Radical_SAM: Radical 99.4 4.2E-13 9.1E-18 112.7 9.3 144 134-286 2-166 (166)
74 PRK13347 coproporphyrinogen II 99.4 4.5E-12 9.8E-17 128.4 16.4 164 129-300 51-242 (453)
75 PRK00164 moaA molybdenum cofac 99.4 1.5E-11 3.2E-16 119.1 18.6 179 132-320 20-217 (331)
76 PRK08208 coproporphyrinogen II 99.4 1.3E-11 2.7E-16 124.4 17.8 168 128-303 39-235 (430)
77 PRK05628 coproporphyrinogen II 99.4 7E-12 1.5E-16 123.7 15.6 160 138-304 11-203 (375)
78 TIGR00539 hemN_rel putative ox 99.4 8.5E-12 1.8E-16 122.6 15.9 159 138-303 9-194 (360)
79 PRK13361 molybdenum cofactor b 99.4 3.1E-11 6.6E-16 117.4 19.4 176 133-320 18-213 (329)
80 TIGR02666 moaA molybdenum cofa 99.4 3.8E-11 8.2E-16 116.5 18.3 158 133-300 14-191 (334)
81 PRK08446 coproporphyrinogen II 99.3 1.3E-11 2.7E-16 121.3 14.1 160 137-303 8-192 (350)
82 PRK07379 coproporphyrinogen II 99.3 2.3E-11 5E-16 121.6 16.2 161 137-304 18-210 (400)
83 PRK09058 coproporphyrinogen II 99.3 1.8E-11 3.9E-16 124.0 15.4 168 129-304 62-258 (449)
84 PLN02951 Molybderin biosynthes 99.3 5E-11 1.1E-15 118.4 18.1 177 133-320 62-257 (373)
85 TIGR02668 moaA_archaeal probab 99.3 1.2E-10 2.6E-15 111.2 18.6 163 129-303 10-189 (302)
86 PRK08898 coproporphyrinogen II 99.3 1.1E-10 2.3E-15 116.5 18.0 190 137-333 27-246 (394)
87 PRK09057 coproporphyrinogen II 99.3 1.1E-10 2.3E-15 115.9 17.1 164 131-303 7-197 (380)
88 PRK08629 coproporphyrinogen II 99.3 1.1E-10 2.3E-15 118.2 17.0 191 130-328 54-268 (433)
89 PRK06294 coproporphyrinogen II 99.3 1.1E-10 2.4E-15 115.5 15.1 167 130-304 8-198 (370)
90 PRK06582 coproporphyrinogen II 99.2 2.8E-10 6E-15 113.7 14.7 166 130-304 13-205 (390)
91 PRK05301 pyrroloquinoline quin 99.2 3.4E-09 7.3E-14 104.5 21.2 195 114-326 6-219 (378)
92 TIGR01210 conserved hypothetic 99.2 1.4E-09 3E-14 105.7 16.9 190 129-325 15-243 (313)
93 COG1032 Fe-S oxidoreductase [E 99.1 4.9E-10 1.1E-14 111.3 12.3 167 129-299 198-393 (490)
94 TIGR01290 nifB nitrogenase cof 99.0 1.9E-08 4.1E-13 102.3 19.9 204 117-327 12-257 (442)
95 TIGR02493 PFLA pyruvate format 99.0 6.2E-08 1.3E-12 89.0 18.6 187 131-327 17-234 (235)
96 COG0635 HemN Coproporphyrinoge 99.0 2.2E-08 4.8E-13 101.0 16.5 168 129-303 35-231 (416)
97 TIGR02109 PQQ_syn_pqqE coenzym 99.0 4.8E-08 1E-12 95.5 18.3 156 130-297 8-180 (358)
98 TIGR03470 HpnH hopanoid biosyn 98.9 1.6E-07 3.5E-12 91.4 18.5 178 130-321 29-221 (318)
99 TIGR02495 NrdG2 anaerobic ribo 98.9 1.3E-07 2.7E-12 84.4 16.0 152 129-290 16-183 (191)
100 PRK11145 pflA pyruvate formate 98.8 2.3E-07 5.1E-12 86.1 17.5 188 132-328 23-240 (246)
101 TIGR03822 AblA_like_2 lysine-2 98.8 1.3E-07 2.7E-12 92.3 16.0 192 103-321 67-286 (321)
102 COG1242 Predicted Fe-S oxidore 98.8 7.2E-08 1.6E-12 92.2 13.7 67 227-297 150-218 (312)
103 COG2896 MoaA Molybdenum cofact 98.8 2.7E-07 5.9E-12 90.3 16.9 179 129-317 9-207 (322)
104 PRK14455 ribosomal RNA large s 98.7 1.5E-06 3.2E-11 86.2 19.9 189 131-328 111-325 (356)
105 COG2516 Biotin synthase-relate 98.7 3.6E-07 7.8E-12 88.8 14.8 165 129-299 29-223 (339)
106 TIGR01211 ELP3 histone acetylt 98.7 6.4E-07 1.4E-11 92.9 16.9 185 90-298 46-296 (522)
107 PRK14469 ribosomal RNA large s 98.7 1.7E-06 3.7E-11 85.2 18.6 190 129-327 101-312 (343)
108 PRK14456 ribosomal RNA large s 98.6 2.6E-06 5.6E-11 85.0 19.2 189 132-328 124-341 (368)
109 PRK14463 ribosomal RNA large s 98.6 5E-06 1.1E-10 82.3 20.3 186 129-327 103-312 (349)
110 TIGR00238 KamA family protein. 98.6 3.5E-06 7.7E-11 82.6 17.7 156 130-305 114-295 (331)
111 COG0535 Predicted Fe-S oxidore 98.5 5.6E-06 1.2E-10 79.0 17.6 183 130-323 20-219 (347)
112 PRK13762 tRNA-modifying enzyme 98.5 4.6E-06 9.9E-11 81.6 16.8 181 138-328 67-290 (322)
113 TIGR00048 radical SAM enzyme, 98.5 8.2E-06 1.8E-10 81.0 18.6 186 131-326 107-319 (355)
114 PRK14466 ribosomal RNA large s 98.5 1.2E-05 2.6E-10 79.6 19.5 188 129-325 103-310 (345)
115 PRK14460 ribosomal RNA large s 98.5 1E-05 2.2E-10 80.2 18.1 187 132-327 105-319 (354)
116 PRK14470 ribosomal RNA large s 98.5 2.5E-05 5.4E-10 77.0 20.3 184 132-325 100-305 (336)
117 PRK14457 ribosomal RNA large s 98.5 2.2E-05 4.8E-10 77.7 20.0 189 129-327 101-317 (345)
118 PRK14468 ribosomal RNA large s 98.4 1.9E-05 4.1E-10 78.0 19.3 186 131-326 95-307 (343)
119 TIGR03821 AblA_like_1 lysine-2 98.4 1.3E-05 2.8E-10 78.4 17.7 172 131-322 98-293 (321)
120 TIGR03278 methan_mark_10 putat 98.4 1.7E-05 3.7E-10 80.0 18.6 185 137-329 30-244 (404)
121 COG0731 Fe-S oxidoreductases [ 98.4 9.3E-06 2E-10 78.8 15.9 183 138-330 33-242 (296)
122 PRK14459 ribosomal RNA large s 98.4 2.6E-05 5.7E-10 78.0 18.5 167 131-301 123-323 (373)
123 PRK14453 chloramphenicol/florf 98.3 9.1E-05 2E-09 73.4 19.3 188 132-328 103-318 (347)
124 COG1031 Uncharacterized Fe-S o 98.2 3.2E-05 6.9E-10 78.6 14.7 169 133-305 187-410 (560)
125 PRK13758 anaerobic sulfatase-m 98.2 9E-05 2E-09 72.8 17.5 177 136-320 12-216 (370)
126 TIGR03820 lys_2_3_AblA lysine- 98.2 0.00013 2.9E-09 74.0 18.0 158 130-297 109-283 (417)
127 COG1856 Uncharacterized homolo 98.1 8.3E-05 1.8E-09 69.7 14.3 190 129-329 11-218 (275)
128 PRK13745 anaerobic sulfatase-m 98.1 0.00026 5.6E-09 71.2 18.2 158 135-301 20-205 (412)
129 COG4277 Predicted DNA-binding 98.0 1.8E-05 3.9E-10 76.8 8.7 172 133-308 58-265 (404)
130 PRK14467 ribosomal RNA large s 97.9 0.0011 2.3E-08 65.9 19.6 188 129-327 99-316 (348)
131 TIGR02494 PFLE_PFLC glycyl-rad 97.9 0.0004 8.7E-09 66.2 15.5 162 156-327 105-293 (295)
132 PRK11194 ribosomal RNA large s 97.9 0.0014 2.9E-08 65.8 19.7 186 131-327 105-324 (372)
133 PRK14464 ribosomal RNA large s 97.9 0.00061 1.3E-08 67.6 16.2 163 132-299 99-279 (344)
134 COG2100 Predicted Fe-S oxidore 97.8 0.00041 8.8E-09 68.3 13.8 180 135-323 113-322 (414)
135 cd03174 DRE_TIM_metallolyase D 97.8 0.00041 9E-09 64.4 12.7 153 156-323 15-182 (265)
136 PRK14454 ribosomal RNA large s 97.8 0.0028 6E-08 62.8 19.0 189 129-327 101-313 (342)
137 PRK14462 ribosomal RNA large s 97.7 0.0028 6.2E-08 63.2 17.8 185 132-327 113-325 (356)
138 COG1180 PflA Pyruvate-formate 97.6 0.0074 1.6E-07 57.5 17.8 184 130-328 36-240 (260)
139 TIGR03365 Bsubt_queE 7-cyano-7 97.5 0.00075 1.6E-08 63.3 10.4 71 129-205 23-99 (238)
140 COG2108 Uncharacterized conser 97.5 0.00076 1.6E-08 66.2 10.7 147 132-299 31-201 (353)
141 PRK14465 ribosomal RNA large s 97.5 0.0094 2E-07 59.2 18.3 188 131-327 107-316 (342)
142 PF13353 Fer4_12: 4Fe-4S singl 97.3 0.00058 1.3E-08 57.3 6.5 74 129-207 6-84 (139)
143 COG1533 SplB DNA repair photol 97.3 0.0049 1.1E-07 60.0 13.6 156 135-297 35-219 (297)
144 PRK10076 pyruvate formate lyas 97.2 0.025 5.4E-07 52.5 16.8 164 156-328 18-205 (213)
145 PF13394 Fer4_14: 4Fe-4S singl 97.2 0.00042 9.1E-09 57.0 3.9 77 135-213 4-85 (119)
146 COG0641 AslB Arylsulfatase reg 97.1 0.021 4.6E-07 57.4 15.6 180 139-328 18-222 (378)
147 COG1509 KamA Lysine 2,3-aminom 97.0 0.025 5.5E-07 56.4 15.1 157 129-308 111-299 (369)
148 COG1243 ELP3 Histone acetyltra 96.9 0.026 5.7E-07 57.9 14.9 186 92-298 47-288 (515)
149 COG1313 PflX Uncharacterized F 96.9 0.0081 1.8E-07 58.5 10.4 182 137-329 126-328 (335)
150 TIGR02491 NrdG anaerobic ribon 96.8 0.01 2.2E-07 52.0 9.6 67 137-205 23-93 (154)
151 PRK11121 nrdG anaerobic ribonu 96.8 0.0093 2E-07 52.4 9.1 73 137-211 24-101 (154)
152 PRK14461 ribosomal RNA large s 96.7 0.088 1.9E-06 53.0 16.5 151 131-289 109-299 (371)
153 COG1244 Predicted Fe-S oxidore 96.7 0.04 8.7E-07 54.4 13.5 161 129-297 47-243 (358)
154 PRK05692 hydroxymethylglutaryl 96.5 0.071 1.5E-06 51.6 13.9 134 155-297 21-175 (287)
155 TIGR02826 RNR_activ_nrdG3 anae 96.4 0.012 2.7E-07 51.5 7.6 70 129-205 15-87 (147)
156 KOG2876 Molybdenum cofactor bi 96.4 0.005 1.1E-07 59.2 5.3 181 129-315 9-205 (323)
157 cd07948 DRE_TIM_HCS Saccharomy 96.2 0.16 3.5E-06 48.4 14.4 130 156-297 18-161 (262)
158 cd07939 DRE_TIM_NifV Streptomy 96.0 0.19 4.2E-06 47.4 13.9 146 156-321 16-173 (259)
159 PLN02746 hydroxymethylglutaryl 96.0 0.18 3.9E-06 50.3 14.1 135 155-297 63-217 (347)
160 COG1625 Fe-S oxidoreductase, r 96.0 0.11 2.3E-06 52.8 12.6 181 138-328 36-244 (414)
161 cd07940 DRE_TIM_IPMS 2-isoprop 95.9 0.19 4.1E-06 47.7 13.3 132 156-297 16-163 (268)
162 cd07943 DRE_TIM_HOA 4-hydroxy- 95.7 0.19 4.2E-06 47.5 12.3 145 156-321 18-175 (263)
163 TIGR02660 nifV_homocitr homoci 95.6 0.29 6.2E-06 48.8 14.0 145 155-322 18-177 (365)
164 PRK11858 aksA trans-homoaconit 95.5 0.31 6.6E-06 48.9 13.8 144 156-322 22-180 (378)
165 PF00682 HMGL-like: HMGL-like 95.5 0.089 1.9E-06 48.5 9.2 130 156-297 10-157 (237)
166 cd07938 DRE_TIM_HMGL 3-hydroxy 95.4 0.24 5.2E-06 47.5 12.0 137 155-297 15-169 (274)
167 COG0602 NrdG Organic radical a 95.4 0.066 1.4E-06 49.7 7.8 68 128-204 22-97 (212)
168 cd07944 DRE_TIM_HOA_like 4-hyd 95.3 0.3 6.5E-06 46.6 12.3 142 156-322 16-173 (266)
169 COG0820 Predicted Fe-S-cluster 95.2 0.37 8.1E-06 48.1 12.8 153 136-297 108-290 (349)
170 TIGR02090 LEU1_arch isopropylm 95.1 0.51 1.1E-05 47.0 13.8 147 155-321 17-175 (363)
171 COG5014 Predicted Fe-S oxidore 94.8 0.11 2.4E-06 47.5 7.4 126 138-272 50-196 (228)
172 PRK08195 4-hyroxy-2-oxovalerat 94.6 0.53 1.2E-05 46.6 12.2 146 156-321 21-178 (337)
173 TIGR03217 4OH_2_O_val_ald 4-hy 94.3 0.8 1.7E-05 45.3 12.7 145 156-321 20-177 (333)
174 PRK09389 (R)-citramalate synth 93.2 2.2 4.7E-05 44.4 14.2 145 155-321 19-177 (488)
175 PRK00915 2-isopropylmalate syn 92.7 2.5 5.5E-05 44.2 13.9 144 155-321 21-183 (513)
176 cd07945 DRE_TIM_CMS Leptospira 91.9 2.8 6E-05 40.5 12.2 131 156-297 15-167 (280)
177 PF05853 DUF849: Prokaryotic p 91.8 1.6 3.4E-05 42.0 10.3 59 155-213 21-80 (272)
178 cd07937 DRE_TIM_PC_TC_5S Pyruv 91.7 6.1 0.00013 37.8 14.2 138 156-297 17-169 (275)
179 TIGR00973 leuA_bact 2-isopropy 90.9 5.9 0.00013 41.3 14.2 144 155-321 18-180 (494)
180 PRK12330 oxaloacetate decarbox 89.9 5.3 0.00012 41.9 12.8 135 156-297 23-175 (499)
181 COG0119 LeuA Isopropylmalate/h 89.5 5 0.00011 41.0 12.0 133 155-297 19-166 (409)
182 cd07941 DRE_TIM_LeuA3 Desulfob 89.5 7.5 0.00016 37.1 12.7 147 156-322 16-186 (273)
183 PRK12331 oxaloacetate decarbox 89.0 16 0.00035 37.8 15.4 138 156-297 22-174 (448)
184 TIGR01108 oadA oxaloacetate de 88.6 11 0.00023 40.4 14.1 138 156-297 17-169 (582)
185 PRK14040 oxaloacetate decarbox 87.0 19 0.00041 38.6 14.9 138 156-297 23-175 (593)
186 PF06180 CbiK: Cobalt chelatas 86.9 4.6 9.9E-05 38.9 9.4 132 157-301 55-207 (262)
187 PRK09282 pyruvate carboxylase 86.9 15 0.00033 39.3 14.1 139 156-297 22-174 (592)
188 PLN03228 methylthioalkylmalate 86.6 14 0.00029 38.9 13.3 129 156-297 102-259 (503)
189 PF04481 DUF561: Protein of un 86.0 14 0.00029 35.2 11.6 120 156-296 23-151 (242)
190 PRK14041 oxaloacetate decarbox 85.8 17 0.00037 37.9 13.5 139 156-297 21-173 (467)
191 PRK12344 putative alpha-isopro 85.6 31 0.00066 36.4 15.4 145 155-322 22-193 (524)
192 TIGR03279 cyano_FeS_chp putati 85.0 13 0.00029 38.3 12.1 55 231-289 151-206 (433)
193 PRK12581 oxaloacetate decarbox 84.3 48 0.001 34.6 15.9 150 134-297 14-183 (468)
194 COG4822 CbiK Cobalamin biosynt 83.7 9.8 0.00021 36.1 9.5 156 155-326 55-226 (265)
195 PRK14042 pyruvate carboxylase 83.1 26 0.00057 37.6 13.8 155 134-297 5-174 (596)
196 cd00950 DHDPS Dihydrodipicolin 82.8 8.1 0.00018 36.6 9.1 52 242-297 50-102 (284)
197 cd04823 ALAD_PBGS_aspartate_ri 82.5 21 0.00045 35.5 11.7 124 155-299 49-189 (320)
198 cd00452 KDPG_aldolase KDPG and 82.0 23 0.0005 31.7 11.3 104 157-299 13-126 (190)
199 PLN02321 2-isopropylmalate syn 82.0 48 0.001 35.9 15.3 141 155-321 103-274 (632)
200 PRK08883 ribulose-phosphate 3- 81.3 17 0.00037 33.9 10.3 137 157-300 9-198 (220)
201 cd00377 ICL_PEPM Members of th 80.8 16 0.00034 34.5 10.1 54 242-297 121-180 (243)
202 COG0113 HemB Delta-aminolevuli 80.6 21 0.00046 35.4 10.9 133 147-300 48-198 (330)
203 cd00954 NAL N-Acetylneuraminic 80.2 12 0.00025 35.9 9.1 51 242-296 51-102 (288)
204 TIGR03572 WbuZ glycosyl amidat 79.4 13 0.00028 34.2 8.9 123 159-300 29-176 (232)
205 PRK03170 dihydrodipicolinate s 79.3 13 0.00028 35.5 9.2 51 243-297 52-103 (292)
206 PF00701 DHDPS: Dihydrodipicol 79.2 12 0.00026 35.7 8.8 51 242-296 51-102 (289)
207 cd02810 DHOD_DHPD_FMN Dihydroo 78.5 9.3 0.0002 36.2 7.9 49 243-297 146-196 (289)
208 cd00408 DHDPS-like Dihydrodipi 77.6 17 0.00036 34.3 9.3 52 242-297 47-99 (281)
209 cd04731 HisF The cyclase subun 77.5 22 0.00047 32.9 9.8 123 159-300 26-172 (243)
210 cd00384 ALAD_PBGS Porphobilino 77.4 33 0.00072 34.0 11.3 120 155-300 46-185 (314)
211 PRK03620 5-dehydro-4-deoxygluc 77.3 18 0.00039 35.0 9.6 52 242-297 57-108 (303)
212 TIGR00977 LeuA_rel 2-isopropyl 77.0 70 0.0015 33.8 14.4 144 155-321 18-188 (526)
213 cd00564 TMP_TenI Thiamine mono 76.5 38 0.00083 29.3 10.6 50 159-214 11-60 (196)
214 TIGR00433 bioB biotin syntheta 76.5 69 0.0015 30.2 13.2 118 157-300 155-276 (296)
215 PRK08629 coproporphyrinogen II 76.3 28 0.00061 35.6 11.0 65 240-306 209-287 (433)
216 PRK08745 ribulose-phosphate 3- 74.9 13 0.00027 34.9 7.5 107 157-284 13-131 (223)
217 TIGR00262 trpA tryptophan synt 74.4 55 0.0012 31.1 11.8 55 156-210 20-89 (256)
218 COG4464 CapC Capsular polysacc 74.4 29 0.00062 33.1 9.5 30 155-184 15-44 (254)
219 PRK00043 thiE thiamine-phospha 73.9 63 0.0014 28.7 11.6 130 160-325 21-158 (212)
220 TIGR00735 hisF imidazoleglycer 73.7 23 0.00051 33.2 9.1 120 159-297 29-175 (254)
221 PRK06294 coproporphyrinogen II 73.7 60 0.0013 32.3 12.4 64 240-304 165-246 (370)
222 cd00952 CHBPH_aldolase Trans-o 73.2 26 0.00057 34.0 9.6 52 242-297 58-110 (309)
223 PRK14024 phosphoribosyl isomer 72.6 20 0.00043 33.5 8.3 118 160-297 32-166 (241)
224 PRK04452 acetyl-CoA decarbonyl 72.6 28 0.0006 34.6 9.5 147 163-327 78-235 (319)
225 COG0107 HisF Imidazoleglycerol 72.4 10 0.00023 36.2 6.2 101 90-205 84-197 (256)
226 PRK08091 ribulose-phosphate 3- 71.9 17 0.00037 34.3 7.6 109 157-285 22-140 (228)
227 cd06543 GH18_PF-ChiA-like PF-C 71.8 87 0.0019 30.5 12.7 155 105-299 18-179 (294)
228 PRK00748 1-(5-phosphoribosyl)- 71.4 25 0.00054 32.1 8.5 120 159-297 29-166 (233)
229 cd07947 DRE_TIM_Re_CS Clostrid 71.4 35 0.00077 32.9 9.9 123 157-297 18-170 (279)
230 PRK06806 fructose-bisphosphate 71.1 65 0.0014 31.2 11.6 156 157-328 26-199 (281)
231 PRK14057 epimerase; Provisiona 70.8 15 0.00032 35.4 7.0 106 157-284 29-153 (254)
232 TIGR02313 HpaI-NOT-DapA 2,4-di 70.7 32 0.0007 33.1 9.5 52 242-297 50-102 (294)
233 PRK08005 epimerase; Validated 70.4 34 0.00073 31.9 9.1 103 157-284 10-127 (210)
234 cd00537 MTHFR Methylenetetrahy 70.1 68 0.0015 30.3 11.4 50 157-206 70-125 (274)
235 TIGR00674 dapA dihydrodipicoli 70.1 32 0.0007 32.8 9.3 51 243-297 49-100 (285)
236 TIGR03249 KdgD 5-dehydro-4-deo 70.0 32 0.00069 33.1 9.2 51 242-296 55-105 (296)
237 cd00408 DHDPS-like Dihydrodipi 70.0 89 0.0019 29.4 12.2 136 155-322 13-148 (281)
238 cd00951 KDGDH 5-dehydro-4-deox 69.8 34 0.00074 32.8 9.4 49 244-296 52-100 (289)
239 cd04824 eu_ALAD_PBGS_cysteine_ 69.7 12 0.00026 37.1 6.3 57 155-211 46-110 (320)
240 PTZ00372 endonuclease 4-like p 69.4 90 0.002 32.1 12.7 147 158-323 216-378 (413)
241 TIGR01496 DHPS dihydropteroate 69.3 60 0.0013 30.9 10.8 70 156-225 19-101 (257)
242 cd04732 HisA HisA. Phosphorib 68.7 30 0.00066 31.5 8.5 123 157-298 26-167 (234)
243 TIGR01859 fruc_bis_ald_ fructo 68.5 89 0.0019 30.3 11.9 130 157-296 24-172 (282)
244 cd00951 KDGDH 5-dehydro-4-deox 68.5 1E+02 0.0022 29.6 12.3 132 155-322 16-147 (289)
245 PLN02495 oxidoreductase, actin 68.0 49 0.0011 33.6 10.4 56 241-301 94-151 (385)
246 PF00490 ALAD: Delta-aminolevu 67.8 8.7 0.00019 38.2 4.8 124 156-300 53-195 (324)
247 PRK05096 guanosine 5'-monophos 67.6 13 0.00027 37.4 6.0 121 78-224 41-177 (346)
248 PRK04147 N-acetylneuraminate l 67.3 41 0.00088 32.3 9.3 51 243-297 55-106 (293)
249 TIGR02320 PEP_mutase phosphoen 67.0 29 0.00063 33.7 8.3 54 242-297 132-189 (285)
250 COG0329 DapA Dihydrodipicolina 66.9 39 0.00084 32.9 9.2 59 241-303 53-114 (299)
251 cd04734 OYE_like_3_FMN Old yel 66.8 40 0.00087 33.3 9.4 56 247-302 194-256 (343)
252 cd00952 CHBPH_aldolase Trans-o 66.7 99 0.0022 30.0 12.0 136 155-321 24-159 (309)
253 TIGR00683 nanA N-acetylneurami 66.3 45 0.00098 32.1 9.4 50 243-296 52-102 (290)
254 PLN02591 tryptophan synthase 66.2 1.2E+02 0.0027 28.9 12.2 125 138-300 94-221 (250)
255 PRK09283 delta-aminolevulinic 65.7 17 0.00037 36.1 6.4 55 155-211 54-115 (323)
256 TIGR00970 leuA_yeast 2-isoprop 65.0 95 0.0021 33.1 12.3 147 155-321 43-224 (564)
257 COG0710 AroD 3-dehydroquinate 64.7 1.3E+02 0.0028 28.6 12.2 118 160-296 42-182 (231)
258 PRK02083 imidazole glycerol ph 64.6 90 0.0019 29.1 10.9 122 157-297 27-173 (253)
259 PRK05692 hydroxymethylglutaryl 64.4 75 0.0016 30.7 10.6 104 157-292 152-263 (287)
260 TIGR01037 pyrD_sub1_fam dihydr 63.9 52 0.0011 31.5 9.3 50 242-297 140-189 (300)
261 PRK08446 coproporphyrinogen II 63.9 1.6E+02 0.0034 29.1 13.7 61 240-301 160-231 (350)
262 PRK12999 pyruvate carboxylase; 63.3 68 0.0015 37.2 11.5 136 156-297 551-711 (1146)
263 COG0502 BioB Biotin synthase a 63.1 3.1 6.8E-05 41.4 0.8 33 143-176 102-135 (335)
264 COG3246 Uncharacterized conser 62.8 54 0.0012 32.3 9.1 57 155-211 24-80 (298)
265 PLN02417 dihydrodipicolinate s 62.8 59 0.0013 31.1 9.5 49 244-296 53-102 (280)
266 PF04127 DFP: DNA / pantothena 62.5 17 0.00036 33.1 5.4 134 160-302 30-171 (185)
267 KOG2599 Pyridoxal/pyridoxine/p 62.3 1E+02 0.0022 30.4 10.8 122 156-299 61-189 (308)
268 PRK01033 imidazole glycerol ph 62.1 1.3E+02 0.0029 28.3 11.7 120 159-297 29-172 (258)
269 PRK08195 4-hyroxy-2-oxovalerat 61.9 1.2E+02 0.0026 30.1 11.7 134 156-293 140-304 (337)
270 cd04735 OYE_like_4_FMN Old yel 61.3 41 0.00089 33.3 8.3 50 248-299 198-257 (353)
271 PF02875 Mur_ligase_C: Mur lig 61.3 35 0.00076 26.5 6.4 59 220-299 18-81 (91)
272 PLN02746 hydroxymethylglutaryl 61.1 1.9E+02 0.004 29.1 13.2 49 156-208 193-241 (347)
273 TIGR00262 trpA tryptophan synt 60.6 86 0.0019 29.8 10.1 45 246-300 185-230 (256)
274 COG1856 Uncharacterized homolo 60.5 69 0.0015 30.8 9.1 53 240-297 200-252 (275)
275 PRK08207 coproporphyrinogen II 60.4 1E+02 0.0022 32.3 11.3 133 154-294 229-400 (488)
276 PRK09432 metF 5,10-methylenete 59.8 1.8E+02 0.0038 28.4 13.7 140 157-301 94-279 (296)
277 cd00739 DHPS DHPS subgroup of 59.6 1.4E+02 0.003 28.5 11.3 71 155-225 19-102 (257)
278 PRK13384 delta-aminolevulinic 59.5 22 0.00048 35.3 5.9 55 155-211 56-117 (322)
279 cd02930 DCR_FMN 2,4-dienoyl-Co 59.4 21 0.00045 35.3 5.8 51 247-298 190-245 (353)
280 PF07056 DUF1335: Protein of u 59.2 14 0.00031 31.9 4.0 27 262-288 28-54 (131)
281 PLN02540 methylenetetrahydrofo 59.0 1.2E+02 0.0025 32.6 11.6 52 157-208 70-127 (565)
282 PRK05458 guanosine 5'-monophos 58.3 93 0.002 31.0 10.1 123 161-300 97-233 (326)
283 cd00950 DHDPS Dihydrodipicolin 58.1 1.4E+02 0.003 28.2 11.1 121 155-303 16-136 (284)
284 PF00478 IMPDH: IMP dehydrogen 57.9 17 0.00036 36.6 4.9 121 161-300 108-243 (352)
285 PRK13125 trpA tryptophan synth 57.5 1.4E+02 0.003 28.0 10.8 44 248-300 173-217 (244)
286 cd02931 ER_like_FMN Enoate red 57.3 52 0.0011 33.1 8.4 50 248-297 205-272 (382)
287 PRK03170 dihydrodipicolinate s 57.2 1.7E+02 0.0037 27.8 11.6 121 155-303 17-137 (292)
288 COG0036 Rpe Pentose-5-phosphat 57.2 60 0.0013 30.7 8.1 118 158-300 69-200 (220)
289 TIGR02321 Pphn_pyruv_hyd phosp 56.8 47 0.001 32.4 7.7 52 243-297 130-186 (290)
290 PRK13585 1-(5-phosphoribosyl)- 56.5 53 0.0011 30.2 7.7 121 159-298 31-170 (241)
291 PRK09427 bifunctional indole-3 56.4 37 0.00081 35.2 7.3 136 170-323 129-303 (454)
292 COG4474 Uncharacterized protei 56.4 55 0.0012 29.9 7.4 61 159-226 28-91 (180)
293 PLN02417 dihydrodipicolinate s 56.3 1.9E+02 0.0041 27.6 12.1 134 155-322 17-150 (280)
294 PRK00311 panB 3-methyl-2-oxobu 55.9 57 0.0012 31.5 8.0 48 245-296 117-180 (264)
295 COG0821 gcpE 1-hydroxy-2-methy 55.7 1.6E+02 0.0034 29.8 11.1 133 156-328 32-193 (361)
296 PRK07259 dihydroorotate dehydr 55.5 1.9E+02 0.0042 27.6 12.5 143 144-297 5-189 (301)
297 COG1423 ATP-dependent DNA liga 55.4 1.3E+02 0.0028 30.5 10.5 126 155-293 180-345 (382)
298 cd01485 E1-1_like Ubiquitin ac 55.0 88 0.0019 28.4 8.8 102 163-272 32-149 (198)
299 TIGR00695 uxuA mannonate dehyd 54.9 35 0.00077 34.9 6.7 28 156-183 39-66 (394)
300 cd07942 DRE_TIM_LeuA Mycobacte 54.9 2.1E+02 0.0045 27.8 12.4 129 156-297 19-182 (284)
301 cd02803 OYE_like_FMN_family Ol 54.7 1.1E+02 0.0023 29.5 9.9 52 248-299 195-250 (327)
302 cd06556 ICL_KPHMT Members of t 54.6 35 0.00077 32.3 6.3 55 241-296 54-108 (240)
303 TIGR01212 radical SAM protein, 54.3 1.2E+02 0.0027 29.3 10.2 87 240-328 188-289 (302)
304 TIGR00640 acid_CoA_mut_C methy 53.7 62 0.0014 27.7 7.2 41 162-207 42-82 (132)
305 COG5016 Pyruvate/oxaloacetate 53.3 40 0.00086 34.9 6.7 153 133-297 6-176 (472)
306 PRK14847 hypothetical protein; 53.3 2.4E+02 0.0053 28.2 12.1 126 156-293 50-204 (333)
307 cd04747 OYE_like_5_FMN Old yel 53.3 34 0.00075 34.3 6.3 51 248-298 198-256 (361)
308 cd00377 ICL_PEPM Members of th 53.1 1.2E+02 0.0026 28.5 9.6 83 242-327 52-135 (243)
309 PRK08318 dihydropyrimidine deh 52.9 47 0.001 33.6 7.3 54 242-300 81-136 (420)
310 PF00834 Ribul_P_3_epim: Ribul 52.8 31 0.00066 31.8 5.4 121 157-305 9-141 (201)
311 PRK07565 dihydroorotate dehydr 52.8 95 0.0021 30.4 9.2 102 187-297 81-197 (334)
312 cd00958 DhnA Class I fructose- 52.6 1.6E+02 0.0035 26.9 10.3 190 86-300 17-217 (235)
313 COG0685 MetF 5,10-methylenetet 52.5 1.6E+02 0.0034 28.6 10.6 52 157-208 89-142 (291)
314 cd00945 Aldolase_Class_I Class 52.0 1.5E+02 0.0033 25.4 12.2 118 158-297 11-149 (201)
315 CHL00200 trpA tryptophan synth 51.7 1.8E+02 0.0039 27.9 10.7 124 138-300 107-234 (263)
316 PF13714 PEP_mutase: Phosphoen 51.4 1.3E+02 0.0028 28.4 9.5 81 241-327 51-131 (238)
317 KOG2550 IMP dehydrogenase/GMP 51.2 28 0.0006 36.1 5.2 56 165-226 255-320 (503)
318 cd04733 OYE_like_2_FMN Old yel 51.2 42 0.0009 32.9 6.4 52 247-298 202-257 (338)
319 TIGR02317 prpB methylisocitrat 51.0 1.2E+02 0.0026 29.6 9.5 82 242-326 56-138 (285)
320 TIGR03128 RuMP_HxlA 3-hexulose 50.9 1.1E+02 0.0024 27.2 8.8 109 157-297 9-133 (206)
321 cd06557 KPHMT-like Ketopantoat 50.9 1.1E+02 0.0023 29.4 9.0 128 165-296 24-177 (254)
322 PRK09240 thiH thiamine biosynt 50.9 31 0.00068 34.5 5.6 47 242-298 135-181 (371)
323 PF01207 Dus: Dihydrouridine s 50.2 65 0.0014 31.4 7.6 77 243-328 106-182 (309)
324 cd02932 OYE_YqiM_FMN Old yello 50.0 1.4E+02 0.0031 29.1 10.0 51 247-297 207-261 (336)
325 KOG4039 Serine/threonine kinas 49.6 17 0.00037 33.8 3.2 43 141-183 84-132 (238)
326 KOG2670 Enolase [Carbohydrate 49.2 91 0.002 31.5 8.3 132 144-283 204-386 (433)
327 PF02581 TMP-TENI: Thiamine mo 49.1 1.9E+02 0.0041 25.5 10.9 135 158-323 10-146 (180)
328 PRK08208 coproporphyrinogen II 48.9 47 0.001 33.8 6.6 63 240-303 203-277 (430)
329 PRK07565 dihydroorotate dehydr 48.7 67 0.0015 31.5 7.5 57 241-303 83-140 (334)
330 PRK11320 prpB 2-methylisocitra 48.6 1.4E+02 0.003 29.2 9.5 83 241-326 60-143 (292)
331 PRK02506 dihydroorotate dehydr 48.4 1.5E+02 0.0032 28.9 9.7 56 241-301 73-130 (310)
332 TIGR02313 HpaI-NOT-DapA 2,4-di 48.2 2.6E+02 0.0056 26.9 12.3 137 155-322 16-152 (294)
333 PRK08508 biotin synthase; Prov 48.1 41 0.00088 32.2 5.7 49 242-298 72-120 (279)
334 COG1411 Uncharacterized protei 47.9 27 0.00058 32.9 4.2 122 158-297 34-160 (229)
335 PF09587 PGA_cap: Bacterial ca 47.6 1.8E+02 0.004 26.9 9.9 40 163-205 65-104 (250)
336 TIGR00683 nanA N-acetylneurami 47.5 2.6E+02 0.0057 26.8 12.3 137 155-322 16-153 (290)
337 TIGR03239 GarL 2-dehydro-3-deo 47.3 1.9E+02 0.0041 27.4 10.0 123 164-299 24-171 (249)
338 PRK03620 5-dehydro-4-deoxygluc 47.1 2.7E+02 0.0059 26.8 12.3 132 155-322 23-154 (303)
339 PRK03739 2-isopropylmalate syn 46.5 3E+02 0.0064 29.4 12.3 146 155-319 47-223 (552)
340 PRK13660 hypothetical protein; 46.4 53 0.0011 30.0 5.9 45 163-214 32-77 (182)
341 COG1902 NemA NADH:flavin oxido 46.3 46 0.00099 33.5 5.9 51 248-298 203-259 (363)
342 cd07944 DRE_TIM_HOA_like 4-hyd 46.0 2.4E+02 0.0053 26.8 10.6 95 157-256 135-258 (266)
343 PRK05437 isopentenyl pyrophosp 45.6 57 0.0012 32.5 6.5 50 242-298 169-218 (352)
344 PRK08898 coproporphyrinogen II 45.6 1.6E+02 0.0035 29.6 9.8 64 240-304 183-260 (394)
345 PRK13587 1-(5-phosphoribosyl)- 45.4 1.8E+02 0.0038 27.2 9.4 119 160-297 31-168 (234)
346 cd07938 DRE_TIM_HMGL 3-hydroxy 45.3 84 0.0018 30.1 7.4 49 157-209 146-194 (274)
347 COG0269 SgbH 3-hexulose-6-phos 45.3 1.9E+02 0.0042 27.3 9.4 116 165-304 72-199 (217)
348 COG0036 Rpe Pentose-5-phosphat 45.1 88 0.0019 29.6 7.2 68 156-229 12-94 (220)
349 PRK06843 inosine 5-monophospha 45.0 41 0.0009 34.4 5.5 58 161-224 153-220 (404)
350 cd01301 rDP_like renal dipepti 45.0 2.4E+02 0.0053 27.6 10.7 123 163-298 116-263 (309)
351 PF05378 Hydant_A_N: Hydantoin 45.0 40 0.00087 30.2 4.8 34 155-188 129-162 (176)
352 cd07940 DRE_TIM_IPMS 2-isoprop 44.9 70 0.0015 30.2 6.7 49 156-208 139-187 (268)
353 TIGR03249 KdgD 5-dehydro-4-deo 44.9 2.9E+02 0.0063 26.5 12.6 132 155-322 21-152 (296)
354 PF07745 Glyco_hydro_53: Glyco 44.8 34 0.00073 34.1 4.7 164 93-299 27-207 (332)
355 PRK00035 hemH ferrochelatase; 44.8 3E+02 0.0066 26.7 12.5 26 275-300 246-271 (333)
356 KOG1560 Translation initiation 44.8 35 0.00076 33.5 4.6 53 247-300 22-105 (339)
357 TIGR00538 hemN oxygen-independ 44.6 3E+02 0.0064 28.1 11.7 63 240-303 213-292 (455)
358 cd07945 DRE_TIM_CMS Leptospira 44.3 88 0.0019 30.1 7.4 52 157-212 144-195 (280)
359 PRK05799 coproporphyrinogen II 44.1 3.3E+02 0.0071 26.9 13.0 64 240-304 161-242 (374)
360 cd02933 OYE_like_FMN Old yello 43.9 54 0.0012 32.4 6.0 50 247-296 205-260 (338)
361 cd04724 Tryptophan_synthase_al 43.7 2.8E+02 0.006 25.9 11.1 23 157-179 11-33 (242)
362 PRK13586 1-(5-phosphoribosyl)- 43.7 1.7E+02 0.0038 27.3 9.1 114 161-294 31-163 (232)
363 PRK08185 hypothetical protein; 43.4 3.2E+02 0.007 26.6 12.3 151 157-328 21-197 (283)
364 cd02801 DUS_like_FMN Dihydrour 43.3 94 0.002 28.0 7.1 52 243-298 107-159 (231)
365 cd02803 OYE_like_FMN_family Ol 43.2 2.1E+02 0.0046 27.4 9.9 52 154-206 128-205 (327)
366 COG2513 PrpB PEP phosphonomuta 43.2 1.8E+02 0.0038 28.7 9.2 77 242-321 61-138 (289)
367 PRK06582 coproporphyrinogen II 43.1 1.9E+02 0.0041 29.2 9.8 25 279-303 228-252 (390)
368 PLN02334 ribulose-phosphate 3- 43.1 98 0.0021 28.5 7.3 132 158-325 18-169 (229)
369 PF00682 HMGL-like: HMGL-like 42.9 73 0.0016 29.1 6.4 50 156-209 133-182 (237)
370 PRK13111 trpA tryptophan synth 42.8 2.7E+02 0.0059 26.6 10.4 105 156-299 125-230 (258)
371 PF05582 Peptidase_U57: YabG p 42.5 64 0.0014 31.7 6.0 51 159-209 140-199 (287)
372 PF04476 DUF556: Protein of un 42.5 1.5E+02 0.0032 28.4 8.3 137 144-296 51-207 (235)
373 PRK08444 hypothetical protein; 42.4 62 0.0014 32.3 6.2 53 241-297 109-168 (353)
374 COG1647 Esterase/lipase [Gener 42.4 75 0.0016 30.4 6.3 107 160-279 70-195 (243)
375 cd02811 IDI-2_FMN Isopentenyl- 42.1 3.2E+02 0.007 26.8 11.1 50 242-298 161-210 (326)
376 TIGR02319 CPEP_Pphonmut carbox 42.0 2E+02 0.0043 28.2 9.4 82 241-325 59-141 (294)
377 PRK09997 hydroxypyruvate isome 42.0 1.7E+02 0.0037 27.1 8.7 132 160-296 85-239 (258)
378 cd04738 DHOD_2_like Dihydrooro 41.9 2.8E+02 0.0061 27.1 10.6 51 243-297 181-236 (327)
379 PRK10558 alpha-dehydro-beta-de 41.5 2.3E+02 0.005 26.9 9.7 123 164-299 31-178 (256)
380 COG1105 FruK Fructose-1-phosph 41.5 2.8E+02 0.006 27.6 10.4 126 89-236 61-195 (310)
381 cd00465 URO-D_CIMS_like The UR 41.4 1.6E+02 0.0034 27.8 8.6 67 254-325 237-304 (306)
382 PRK05926 hypothetical protein; 41.2 35 0.00076 34.3 4.2 53 241-297 127-186 (370)
383 cd04741 DHOD_1A_like Dihydroor 41.2 2.5E+02 0.0055 27.0 10.0 52 242-297 140-193 (294)
384 TIGR02146 LysS_fung_arch homoc 41.1 3.3E+02 0.0072 26.1 14.1 134 156-297 16-159 (344)
385 PLN02274 inosine-5'-monophosph 41.0 50 0.0011 34.7 5.5 57 161-223 248-314 (505)
386 PF06180 CbiK: Cobalt chelatas 40.8 57 0.0012 31.4 5.4 49 240-289 84-134 (262)
387 PRK13397 3-deoxy-7-phosphohept 40.7 2.7E+02 0.0059 26.7 9.9 119 158-296 27-155 (250)
388 PF01244 Peptidase_M19: Membra 40.5 44 0.00095 32.9 4.7 124 164-300 121-273 (320)
389 PRK13523 NADPH dehydrogenase N 40.5 76 0.0016 31.4 6.4 50 248-298 196-248 (337)
390 PRK07428 nicotinate-nucleotide 40.5 64 0.0014 31.5 5.8 54 163-224 206-269 (288)
391 PRK07807 inosine 5-monophospha 40.5 56 0.0012 34.1 5.7 59 160-224 226-294 (479)
392 PTZ00170 D-ribulose-5-phosphat 40.0 2.2E+02 0.0047 26.5 9.1 125 159-300 74-204 (228)
393 PRK02227 hypothetical protein; 39.8 3.5E+02 0.0075 25.9 11.5 146 165-330 12-181 (238)
394 cd02071 MM_CoA_mut_B12_BD meth 39.6 1.1E+02 0.0025 25.2 6.5 39 164-207 41-79 (122)
395 PRK13347 coproporphyrinogen II 39.6 4.1E+02 0.009 27.2 11.8 64 240-304 214-294 (453)
396 TIGR01305 GMP_reduct_1 guanosi 39.6 68 0.0015 32.3 5.9 58 159-223 106-175 (343)
397 PRK10550 tRNA-dihydrouridine s 39.3 3.4E+02 0.0074 26.5 10.7 127 157-298 72-225 (312)
398 PF01120 Alpha_L_fucos: Alpha- 38.7 35 0.00077 33.7 3.8 56 154-214 88-157 (346)
399 TIGR02855 spore_yabG sporulati 38.5 70 0.0015 31.3 5.6 51 159-209 139-198 (283)
400 TIGR01182 eda Entner-Doudoroff 38.5 69 0.0015 29.7 5.4 47 156-211 16-62 (204)
401 COG0329 DapA Dihydrodipicolina 38.4 3.8E+02 0.0083 26.0 12.6 137 155-323 20-156 (299)
402 COG2513 PrpB PEP phosphonomuta 38.3 1.5E+02 0.0033 29.2 7.9 21 276-296 165-185 (289)
403 TIGR00587 nfo apurinic endonuc 38.0 3.5E+02 0.0076 25.5 11.7 145 157-319 85-243 (274)
404 PRK09722 allulose-6-phosphate 38.0 2.7E+02 0.0058 26.3 9.4 106 157-284 12-129 (229)
405 TIGR02151 IPP_isom_2 isopenten 37.9 94 0.002 30.6 6.6 50 242-298 162-211 (333)
406 PRK09722 allulose-6-phosphate 37.7 1.4E+02 0.003 28.2 7.4 41 158-205 67-107 (229)
407 PRK09140 2-dehydro-3-deoxy-6-p 37.6 3.3E+02 0.0071 25.0 12.1 104 156-298 18-132 (206)
408 PRK07455 keto-hydroxyglutarate 37.5 3.1E+02 0.0067 24.7 13.4 102 157-297 21-132 (187)
409 PRK00278 trpC indole-3-glycero 37.1 2.3E+02 0.0051 26.9 9.0 112 165-300 125-243 (260)
410 PRK13398 3-deoxy-7-phosphohept 37.0 1.4E+02 0.003 28.8 7.4 59 267-329 29-91 (266)
411 TIGR00674 dapA dihydrodipicoli 36.7 3.8E+02 0.0082 25.4 11.3 136 155-322 14-149 (285)
412 cd04724 Tryptophan_synthase_al 36.6 2.3E+02 0.005 26.5 8.7 58 235-297 53-111 (242)
413 PF08219 TOM13: Outer membrane 36.5 6 0.00013 31.3 -1.6 16 262-277 42-57 (77)
414 PLN02428 lipoic acid synthase 36.4 1.4E+02 0.003 30.1 7.6 49 242-297 163-212 (349)
415 cd02067 B12-binding B12 bindin 36.0 1.3E+02 0.0028 24.4 6.2 42 164-210 41-83 (119)
416 PF00701 DHDPS: Dihydrodipicol 36.0 68 0.0015 30.5 5.2 136 155-322 17-152 (289)
417 TIGR00737 nifR3_yhdG putative 35.9 1.8E+02 0.0039 28.2 8.2 52 245-298 117-168 (319)
418 PRK09057 coproporphyrinogen II 35.9 2.1E+02 0.0047 28.5 8.9 16 164-179 105-120 (380)
419 cd02911 arch_FMN Archeal FMN-b 35.9 3.7E+02 0.008 25.1 10.0 50 243-298 124-173 (233)
420 cd04740 DHOD_1B_like Dihydroor 35.7 2.9E+02 0.0063 26.2 9.5 54 243-303 73-127 (296)
421 PTZ00314 inosine-5'-monophosph 35.7 69 0.0015 33.5 5.5 119 161-300 241-376 (495)
422 PRK12928 lipoyl synthase; Prov 35.5 1E+02 0.0022 29.9 6.4 79 243-329 121-201 (290)
423 PF01081 Aldolase: KDPG and KH 35.5 76 0.0016 29.3 5.1 47 156-211 16-62 (196)
424 TIGR01303 IMP_DH_rel_1 IMP deh 35.4 75 0.0016 33.2 5.7 118 160-300 224-360 (475)
425 COG0167 PyrD Dihydroorotate de 35.1 1.4E+02 0.003 29.7 7.1 120 158-294 171-300 (310)
426 PF01729 QRPTase_C: Quinolinat 34.9 1.2E+02 0.0025 27.3 6.1 54 163-224 90-153 (169)
427 COG1179 Dinucleotide-utilizing 34.9 83 0.0018 30.5 5.4 50 165-214 45-105 (263)
428 PRK09249 coproporphyrinogen II 34.8 1.8E+02 0.0039 29.8 8.3 64 240-304 213-293 (453)
429 PRK08931 5'-methylthioadenosin 34.8 1.5E+02 0.0033 28.9 7.4 49 243-298 132-187 (289)
430 TIGR00007 phosphoribosylformim 34.7 3.1E+02 0.0067 24.9 9.1 45 159-206 27-71 (230)
431 TIGR00676 fadh2 5,10-methylene 34.4 4.1E+02 0.009 25.2 10.6 54 157-210 70-127 (272)
432 PRK11320 prpB 2-methylisocitra 34.3 1.6E+02 0.0035 28.8 7.5 120 156-297 60-186 (292)
433 cd00953 KDG_aldolase KDG (2-ke 34.2 1.4E+02 0.0031 28.4 7.1 28 155-182 15-42 (279)
434 cd02072 Glm_B12_BD B12 binding 34.2 3.1E+02 0.0066 23.7 9.4 52 241-296 61-114 (128)
435 cd07941 DRE_TIM_LeuA3 Desulfob 34.1 1.3E+02 0.0029 28.6 6.8 49 157-209 148-196 (273)
436 PTZ00413 lipoate synthase; Pro 34.0 5.4E+02 0.012 26.5 12.1 153 141-305 192-377 (398)
437 cd06167 LabA_like LabA_like pr 34.0 1.5E+02 0.0033 24.8 6.5 49 155-214 81-129 (149)
438 TIGR01302 IMP_dehydrog inosine 33.9 99 0.0021 31.8 6.2 57 161-223 224-290 (450)
439 PRK05628 coproporphyrinogen II 33.8 3.8E+02 0.0081 26.5 10.2 64 240-304 170-251 (375)
440 PRK06267 hypothetical protein; 33.7 4.8E+02 0.01 25.8 11.2 116 157-300 150-272 (350)
441 TIGR00640 acid_CoA_mut_C methy 33.6 93 0.002 26.6 5.1 18 179-196 6-23 (132)
442 TIGR00126 deoC deoxyribose-pho 33.5 4E+02 0.0086 24.7 12.4 118 156-296 14-151 (211)
443 cd07943 DRE_TIM_HOA 4-hydroxy- 33.4 1.6E+02 0.0036 27.6 7.3 47 157-207 138-184 (263)
444 TIGR03551 F420_cofH 7,8-dideme 33.2 1.1E+02 0.0023 30.1 6.2 50 242-295 100-156 (343)
445 TIGR02319 CPEP_Pphonmut carbox 33.0 2.2E+02 0.0049 27.9 8.3 52 243-297 130-185 (294)
446 cd03329 MR_like_4 Mandelate ra 32.8 4.8E+02 0.01 25.7 10.7 48 157-209 142-190 (368)
447 cd00956 Transaldolase_FSA Tran 32.8 2.4E+02 0.0052 26.0 8.1 116 158-298 62-186 (211)
448 cd04723 HisA_HisF Phosphoribos 32.7 2.1E+02 0.0045 26.5 7.7 124 159-297 34-165 (233)
449 PRK10550 tRNA-dihydrouridine s 32.7 1.3E+02 0.0029 29.4 6.7 52 243-297 115-168 (312)
450 cd03174 DRE_TIM_metallolyase D 32.7 98 0.0021 28.4 5.5 48 157-208 143-190 (265)
451 TIGR03821 AblA_like_1 lysine-2 32.7 3.2E+02 0.0069 26.8 9.4 67 164-237 194-260 (321)
452 PRK12330 oxaloacetate decarbox 32.7 1.3E+02 0.0028 31.7 6.9 54 156-213 151-205 (499)
453 TIGR00539 hemN_rel putative ox 32.6 4.9E+02 0.011 25.6 13.7 63 240-303 162-238 (360)
454 PRK15108 biotin synthase; Prov 32.4 1.3E+02 0.0028 29.9 6.6 73 242-328 108-180 (345)
455 PRK00507 deoxyribose-phosphate 32.4 3.2E+02 0.0069 25.5 8.9 105 143-252 61-199 (221)
456 PRK06801 hypothetical protein; 32.4 4.8E+02 0.01 25.4 11.0 155 157-328 26-202 (286)
457 TIGR03128 RuMP_HxlA 3-hexulose 32.3 2.3E+02 0.005 25.2 7.7 109 165-300 68-189 (206)
458 PRK06015 keto-hydroxyglutarate 32.3 94 0.002 28.8 5.2 46 157-211 13-58 (201)
459 PF02219 MTHFR: Methylenetetra 32.1 2.8E+02 0.006 26.5 8.7 49 157-205 82-136 (287)
460 TIGR02356 adenyl_thiF thiazole 32.1 1E+02 0.0022 28.0 5.4 51 164-214 35-96 (202)
461 cd08065 MPN_eIF3h Mpr1p, Pad1p 32.0 84 0.0018 30.0 5.1 68 247-323 10-104 (266)
462 PRK01130 N-acetylmannosamine-6 31.8 2.9E+02 0.0063 25.0 8.4 114 164-300 79-205 (221)
463 PRK05286 dihydroorotate dehydr 31.8 4.7E+02 0.01 25.8 10.5 50 244-298 191-246 (344)
464 smart00812 Alpha_L_fucos Alpha 31.7 45 0.00098 33.7 3.3 54 156-214 80-147 (384)
465 PRK11613 folP dihydropteroate 31.7 4.9E+02 0.011 25.3 11.2 69 156-224 34-115 (282)
466 PRK05474 xylose isomerase; Pro 31.6 95 0.0021 32.2 5.6 51 161-214 72-136 (437)
467 PRK10605 N-ethylmaleimide redu 31.5 1.2E+02 0.0025 30.4 6.1 51 248-298 213-270 (362)
468 cd03412 CbiK_N Anaerobic cobal 31.4 1.5E+02 0.0033 25.0 6.0 47 161-212 57-104 (127)
469 TIGR01769 GGGP geranylgeranylg 31.3 4.3E+02 0.0093 24.5 10.6 149 160-324 11-174 (205)
470 PRK08255 salicylyl-CoA 5-hydro 31.3 1.1E+02 0.0023 33.6 6.4 50 248-297 605-658 (765)
471 TIGR00284 dihydropteroate synt 31.2 6E+02 0.013 26.9 11.5 120 160-288 165-305 (499)
472 cd00381 IMPDH IMPDH: The catal 31.2 1.1E+02 0.0024 30.1 5.9 58 161-224 94-161 (325)
473 CHL00200 trpA tryptophan synth 31.0 4.8E+02 0.01 25.0 11.3 128 156-289 25-200 (263)
474 TIGR01334 modD putative molybd 31.0 2.3E+02 0.005 27.6 7.9 80 194-298 174-264 (277)
475 cd00953 KDG_aldolase KDG (2-ke 30.9 4.7E+02 0.01 24.8 11.8 48 242-296 49-97 (279)
476 PRK13111 trpA tryptophan synth 30.8 4.8E+02 0.01 24.9 10.7 56 156-211 22-92 (258)
477 PF00478 IMPDH: IMP dehydrogen 30.7 5.4E+02 0.012 26.0 10.7 106 163-297 51-177 (352)
478 TIGR01501 MthylAspMutase methy 30.7 3.6E+02 0.0077 23.4 9.6 98 178-295 4-115 (134)
479 PLN02334 ribulose-phosphate 3- 30.6 1.2E+02 0.0026 27.9 5.8 68 157-224 122-200 (229)
480 smart00642 Aamy Alpha-amylase 30.4 2E+02 0.0042 25.4 6.8 56 273-328 15-82 (166)
481 TIGR03234 OH-pyruv-isom hydrox 30.3 3.7E+02 0.008 24.6 8.9 20 273-292 214-233 (254)
482 TIGR00677 fadh2_euk methylenet 30.0 5.1E+02 0.011 24.9 10.9 51 157-207 71-127 (281)
483 PRK07896 nicotinate-nucleotide 29.9 2.6E+02 0.0055 27.5 8.0 81 194-298 185-275 (289)
484 COG3618 Predicted metal-depend 29.9 5.4E+02 0.012 25.2 13.7 72 247-329 182-257 (279)
485 PF05378 Hydant_A_N: Hydantoin 29.9 1.4E+02 0.0031 26.7 5.9 44 276-329 133-176 (176)
486 PRK07535 methyltetrahydrofolat 29.8 5E+02 0.011 24.8 10.3 48 156-206 21-68 (261)
487 cd01492 Aos1_SUMO Ubiquitin ac 29.5 1.3E+02 0.0028 27.3 5.6 52 163-214 34-96 (197)
488 PRK02227 hypothetical protein; 29.5 4.9E+02 0.011 24.9 9.6 152 148-323 55-231 (238)
489 PRK07107 inosine 5-monophospha 29.4 1.2E+02 0.0025 32.0 5.9 61 157-223 238-309 (502)
490 PRK05597 molybdopterin biosynt 29.4 2.7E+02 0.0059 27.6 8.4 51 164-214 42-103 (355)
491 TIGR01303 IMP_DH_rel_1 IMP deh 29.4 1.2E+02 0.0026 31.6 6.0 44 245-297 251-294 (475)
492 COG1060 ThiH Thiamine biosynth 29.3 63 0.0014 32.7 3.9 87 240-328 118-211 (370)
493 PRK10128 2-keto-3-deoxy-L-rham 29.3 4.6E+02 0.01 25.2 9.6 148 164-326 30-204 (267)
494 TIGR02321 Pphn_pyruv_hyd phosp 29.2 4.2E+02 0.0091 25.8 9.4 77 241-320 57-136 (290)
495 PF08543 Phos_pyr_kin: Phospho 29.2 65 0.0014 30.0 3.7 28 157-184 139-166 (246)
496 PRK05660 HemN family oxidoredu 29.2 5.9E+02 0.013 25.4 14.0 63 240-303 169-245 (378)
497 PF13714 PEP_mutase: Phosphoen 28.9 51 0.0011 31.1 3.0 32 265-296 143-174 (238)
498 TIGR02317 prpB methylisocitrat 28.8 2.5E+02 0.0055 27.3 7.8 52 243-297 126-181 (285)
499 PTZ00170 D-ribulose-5-phosphat 28.7 3.6E+02 0.0079 25.0 8.6 70 157-228 16-97 (228)
500 cd01483 E1_enzyme_family Super 28.7 1.5E+02 0.0032 24.9 5.5 51 164-214 13-74 (143)
No 1
>KOG2672 consensus Lipoate synthase [Coenzyme transport and metabolism]
Probab=100.00 E-value=8.7e-103 Score=731.20 Aligned_cols=291 Identities=60% Similarity=1.047 Sum_probs=278.5
Q ss_pred HHHHhhhCCCCccccccCCCC--CCccccccCC----CCCCCCCCceeecCCCCcchHHHHHHHhhcCchhhhhccCCCC
Q 019890 42 LRARLASESPALSDFIDLQSN--SSYSVEVGTK----KKPLPKPKWMKESIPGGDKYVQIKKKLRELKLHTVCEEAKCPN 115 (334)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~----~~~~r~P~wlk~~~p~~~~~~~~~~~l~~~~L~Tvceea~cpn 115 (334)
|++.|+ +||+|+||++++.+ .++..+.+.+ ..++|+|+|||.++|.|+||++||+.|++++||||||||+|||
T Consensus 19 ~~~~l~-~gPs~~DFv~~d~~~~~~~~~e~~~~~~~~~~~~rlP~WLK~~iP~G~n~~~iK~~lr~l~L~TVCEEArCPN 97 (360)
T KOG2672|consen 19 FKELLA-KGPSFADFVSGDKPLRADWDFEKGRKKREGEERLRLPPWLKTKIPLGENYNKIKKDLRELKLHTVCEEARCPN 97 (360)
T ss_pred hhhhhc-cCCchhhhhcCCcccccccchhhchhhhhccccccCChhhcccCCCCccHHHHHHHHhhCchhhhhhhccCCc
Confidence 778877 99999999999875 2344433333 3578999999999999999999999999999999999999999
Q ss_pred CcccccCCCCCcceEEEEeecCCCCCCCCCcccCCCCCCCCCCchhHHHHHHHHHHCCCcEEEEeeecCCCCCCchHHHH
Q 019890 116 LGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRAPPPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHF 195 (334)
Q Consensus 116 i~ec~~~~~~~~~Tatfm~igdgCtr~C~FC~V~~~r~p~~ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~f 195 (334)
||||||||+++++|||||+|||+|||+|+||+|+++|.|+|+||.||++.|+||+.||+.||||||||||||+|+|+.||
T Consensus 98 iGECWgG~d~~~ATATIMlmGDTCTRGCRFCsVKTsR~PpPlDp~EPeNTAeAIasWgl~YiVlTSVDRDDlpDgGa~Hi 177 (360)
T KOG2672|consen 98 IGECWGGGDKSTATATIMLMGDTCTRGCRFCSVKTSRNPPPLDPNEPENTAEAIASWGLDYIVLTSVDRDDLPDGGANHI 177 (360)
T ss_pred hhhccCCCCCcceeEEEEeecCccccCcceeeeecCCCCcCCCCCCcccHHHHHHHcCCCeEEEEecccccCcCcchHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhCCCCceeee-------------eccccccccccchhhHHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCcc
Q 019890 196 AQTVRKLKELKPNMLIEAL-------------VAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGT 262 (334)
Q Consensus 196 a~lIr~Ik~~~P~i~vE~L-------------l~~ag~dv~~HnlETv~~l~~~Vr~r~~tye~sL~vL~~ak~~~p~Gl 262 (334)
|++|++||+++|++.||+| ++.+|+|||+||+|||++|.+.||||+++|+|||++|+++|+..|+ +
T Consensus 178 AkTVq~iK~k~p~ilvE~L~pDF~Gd~~~Ve~va~SGLDV~AHNvETVe~Ltp~VRD~RA~yrQSL~VLk~aK~~~P~-l 256 (360)
T KOG2672|consen 178 AKTVQKIKEKAPEILVECLTPDFRGDLKAVEKVAKSGLDVYAHNVETVEELTPFVRDPRANYRQSLSVLKHAKEVKPG-L 256 (360)
T ss_pred HHHHHHHHhhCcccchhhcCccccCchHHHHHHHhcCccceecchhhHHhcchhhcCcccchHHhHHHHHHHHhhCCC-c
Confidence 9999999999999999998 8899999999999999999999999999999999999999999998 9
Q ss_pred eEeeceEEecCCCHHHHHHHHHHHHHcCCcEEeeccCcCCCCCCCcccccCCHHHHHHHHHHHHHh---hcCCCC
Q 019890 263 LTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMPVSEYITPEAFERYRALGMEM---VSGSGP 334 (334)
Q Consensus 263 ~tkTgiMVGlGETdEE~~etl~~Lre~gvd~vtigqYlrP~~~h~~v~~yv~P~~f~~~~~~a~~~---~~~~~~ 334 (334)
+++|+||+|+|||+||+.++|++||+++||++|+||||||+++|++|.+||+|++|++|++++++| |+||||
T Consensus 257 itktsiMlglgetdeei~~tl~dLr~~~vdv~t~gqym~ptkrhl~v~eyvtpekf~~w~~~~~~lgf~y~Asgp 331 (360)
T KOG2672|consen 257 ITKTSIMLGLGETDEEIKQTLKDLRAADVDVVTFGQYMQPTKRHLKVKEYVTPEKFDYWKEYGEELGFLYVASGP 331 (360)
T ss_pred eehhhhhhccCCCHHHHHHHHHHHHHcCCcEEecccccCCccccceeEEeeCHHHHHHHHHHhhhcceEEeccCc
Confidence 999999999999999999999999999999999999999999999999999999999999999999 999998
No 2
>COG0320 LipA Lipoate synthase [Coenzyme metabolism]
Probab=100.00 E-value=4.5e-95 Score=679.11 Aligned_cols=254 Identities=54% Similarity=0.972 Sum_probs=248.6
Q ss_pred CCCCCCCCceeecCCCCcchHHHHHHHhhcCchhhhhccCCCCCcccccCCCCCcceEEEEeecCCCCCCCCCcccCCCC
Q 019890 73 KKPLPKPKWMKESIPGGDKYVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSR 152 (334)
Q Consensus 73 ~~~~r~P~wlk~~~p~~~~~~~~~~~l~~~~L~Tvceea~cpni~ec~~~~~~~~~Tatfm~igdgCtr~C~FC~V~~~r 152 (334)
....++|+|||+++|.|.+|.++|++|++++||||||||+||||+|||+.| |||||+||+.|||+|+||.|.+++
T Consensus 19 ~~~~rkP~Wlr~k~p~~~~~~~~k~~~r~~~L~TVCEEA~CPNi~ECw~~~-----tATFmImG~~CTR~C~FC~V~~g~ 93 (306)
T COG0320 19 EELLRKPEWLKVKAPTGSRYQEIKEILRKNGLHTVCEEASCPNIGECWSRG-----TATFMILGDICTRRCRFCDVKTGR 93 (306)
T ss_pred chhccCcHhheecCCCCchHHHHHHHHHhcCCceecccCCCCChHHHhcCC-----ceEEeeccchhccCCCccccCCCC
Confidence 345799999999999999999999999999999999999999999999998 999999999999999999999999
Q ss_pred CCCCCCchhHHHHHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhCCCCceeee-------------ecccc
Q 019890 153 APPPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEAL-------------VAKSG 219 (334)
Q Consensus 153 ~p~~ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~P~i~vE~L-------------l~~ag 219 (334)
|.++|++||.++|++++.+|++|||||||+||||+||||.||+++|++|++.+|++.||+| +.+++
T Consensus 94 -P~~lD~~EP~rvAeaV~~mgLkyVViTsVdRDDL~DGGA~hfa~~i~~Ire~~P~t~iEvL~PDF~G~~~al~~v~~~~ 172 (306)
T COG0320 94 -PNPLDPDEPERVAEAVKDMGLKYVVITSVDRDDLPDGGAQHFAECIRAIRELNPQTTIEVLTPDFRGNDDALEIVADAG 172 (306)
T ss_pred -CCCCCCchHHHHHHHHHHhCCCeEEEEeeccccccccchHHHHHHHHHHHhhCCCceEEEeCccccCCHHHHHHHHhcC
Confidence 8899999999999999999999999999999999999999999999999999999999998 89999
Q ss_pred ccccccchhhHHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCcceEeeceEEecCCCHHHHHHHHHHHHHcCCcEEeeccC
Q 019890 220 LNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQY 299 (334)
Q Consensus 220 ~dv~~HnlETv~~l~~~Vr~r~~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGlGETdEE~~etl~~Lre~gvd~vtigqY 299 (334)
+||||||+|||++||+.|| ++++|++||++|+++|+..|+ +.||||||||||||++|+.++|+|||++|||++|||||
T Consensus 173 pdV~nHNvETVprL~~~VR-p~A~Y~~SL~~L~~~k~~~P~-i~TKSgiMlGLGEt~~Ev~e~m~DLr~~gvdilTiGQY 250 (306)
T COG0320 173 PDVFNHNVETVPRLYPRVR-PGATYERSLSLLERAKELGPD-IPTKSGLMVGLGETDEEVIEVMDDLRSAGVDILTIGQY 250 (306)
T ss_pred cchhhcccccchhcccccC-CCCcHHHHHHHHHHHHHhCCC-cccccceeeecCCcHHHHHHHHHHHHHcCCCEEEeccc
Confidence 9999999999999999999 799999999999999999999 99999999999999999999999999999999999999
Q ss_pred cCCCCCCCcccccCCHHHHHHHHHHHHHh---hcCCCC
Q 019890 300 MRPSKRHMPVSEYITPEAFERYRALGMEM---VSGSGP 334 (334)
Q Consensus 300 lrP~~~h~~v~~yv~P~~f~~~~~~a~~~---~~~~~~ 334 (334)
|||+.+|+||.+||+|++|++|+++|++| +-+|||
T Consensus 251 lqPS~~HlpV~ryv~PeeF~~~~~~a~~~GF~~v~sgP 288 (306)
T COG0320 251 LQPSRKHLPVQRYVTPEEFDELEEVAEEMGFLHVASGP 288 (306)
T ss_pred cCCccccCCceeccCHHHHHHHHHHHHHccchhhccCc
Confidence 99999999999999999999999999999 568888
No 3
>PTZ00413 lipoate synthase; Provisional
Probab=100.00 E-value=8.5e-88 Score=658.36 Aligned_cols=298 Identities=51% Similarity=0.901 Sum_probs=272.0
Q ss_pred cchHHHHHHhhhC---CCCccccccCCCCCCccccc--cCCCCCCCCCCceeecCCCCc----chHHHHHHHhhcCchhh
Q 019890 37 QTLAGLRARLASE---SPALSDFIDLQSNSSYSVEV--GTKKKPLPKPKWMKESIPGGD----KYVQIKKKLRELKLHTV 107 (334)
Q Consensus 37 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~--~~~~~~~r~P~wlk~~~p~~~----~~~~~~~~l~~~~L~Tv 107 (334)
..+..|+++++++ +++|.+|+..+....++... ..++...++|+|||+++|.|+ +|.+++++|++++||||
T Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~~~~~~~~kP~Wlk~~~~~~~~~~~~~~~~~~~~~~~~L~TV 126 (398)
T PTZ00413 47 IFLERFRERLNSDKTGKNSLEGFVDLPEGLKPSAASIGPIKRGEEPLPPWFKVKVPKGASRRPRFNRIRRSMREKKLHTV 126 (398)
T ss_pred HHHHHHHHhhhcccccCCchhhhhcCccccccccccCCCccCCCCCCCcceeecCCCCccccchHHHHHHHHHhCCCcee
Confidence 3488899998733 46999999775443333221 334456799999999999998 99999999999999999
Q ss_pred hhccCCCCCcccccCC-CCCcceEEEEeecCCCCCCCCCcccCCCCCCCCCCchhHHHHHHHHHHCCCcEEEEeeecCCC
Q 019890 108 CEEAKCPNLGECWSGG-ETGTATATIMILGDTCTRGCRFCNVKTSRAPPPPDPDEPTNVAEAIASWGLDYVVITSVDRDD 186 (334)
Q Consensus 108 ceea~cpni~ec~~~~-~~~~~Tatfm~igdgCtr~C~FC~V~~~r~p~~ld~~Ep~~~A~av~~~GlkeVVLTSv~rdD 186 (334)
||||+||||+|||++| ++|++|||||||||.|||+|+||+|++++.|.++|++||.++|++++++|++|+|||||+|||
T Consensus 127 Ceea~CPNi~EC~~~~~~~~~~tATfmilG~~CTr~C~FCaqstg~~p~~lD~eEp~~vA~av~~~Gl~~~VVTSv~RDD 206 (398)
T PTZ00413 127 CEEAKCPNIGECWGGGDEEGTATATIMVMGDHCTRGCRFCSVKTSRKPPPLDPNEPEKVAKAVAEMGVDYIVMTMVDRDD 206 (398)
T ss_pred eCCCCCCChHHHhCCCCCCCCceeEeeecCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCCEEEEEEEcCCC
Confidence 9999999999999997 578999999999999999999999998775677999999999999999999999999999999
Q ss_pred CCCchHHHHHHHHHHHHhhCCCCceeee-------------eccccccccccchhhHHHHHHhhcCCCCCHHHHHHHHHH
Q 019890 187 LADQGSGHFAQTVRKLKELKPNMLIEAL-------------VAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMM 253 (334)
Q Consensus 187 l~d~Ga~~fa~lIr~Ik~~~P~i~vE~L-------------l~~ag~dv~~HnlETv~~l~~~Vr~r~~tye~sL~vL~~ 253 (334)
|+|+|++||+++|++|++..|++.||++ |+++|+|+|+||+||++++|+.||+++++|+++|++|++
T Consensus 207 L~D~ga~~~a~~I~~Ir~~~p~~~IevligDf~g~~e~l~~L~eAG~dvynHNLETv~rLyp~VRt~~atYe~sLe~Lr~ 286 (398)
T PTZ00413 207 LPDGGASHVARCVELIKESNPELLLEALVGDFHGDLKSVEKLANSPLSVYAHNIECVERITPYVRDRRASYRQSLKVLEH 286 (398)
T ss_pred CChhhHHHHHHHHHHHHccCCCCeEEEcCCccccCHHHHHHHHhcCCCEEecccccCHhHHHHHccCcCCHHHHHHHHHH
Confidence 9999999999999999998899999987 889999999999999999999999546999999999999
Q ss_pred HHHhCCCcceEeeceEEecCCCHHHHHHHHHHHHHcCCcEEeeccCcCCCCCCCcccccCCHHHHHHHHHHHHHh---hc
Q 019890 254 AKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMPVSEYITPEAFERYRALGMEM---VS 330 (334)
Q Consensus 254 ak~~~p~Gl~tkTgiMVGlGETdEE~~etl~~Lre~gvd~vtigqYlrP~~~h~~v~~yv~P~~f~~~~~~a~~~---~~ 330 (334)
+|+.++.|+.||||+|||||||++|++++|++|+++|||++||||||||+++|+||.+||+|++|++|+++|++| +-
T Consensus 287 AKe~f~~gi~tcSGiIVGLGET~eEvie~m~dLrelGVDivtIGQYL~Ps~~h~~V~~yv~P~~F~~~~~~a~~~Gf~~v 366 (398)
T PTZ00413 287 VKEFTNGAMLTKSSIMLGLGETEEEVRQTLRDLRTAGVSAVTLGQYLQPTKTRLKVSRYAHPKEFEMWEEEAMKMGFLYC 366 (398)
T ss_pred HHHHhcCCceEeeeeEecCCCCHHHHHHHHHHHHHcCCcEEeeccccCCCcccCCceeccCHHHHHHHHHHHHHcCCceE
Confidence 999844459999999999999999999999999999999999999999999999999999999999999999999 67
Q ss_pred CCCC
Q 019890 331 GSGP 334 (334)
Q Consensus 331 ~~~~ 334 (334)
+|||
T Consensus 367 ~sgP 370 (398)
T PTZ00413 367 ASGP 370 (398)
T ss_pred EecC
Confidence 8998
No 4
>PLN02428 lipoic acid synthase
Probab=100.00 E-value=3.7e-82 Score=617.36 Aligned_cols=294 Identities=73% Similarity=1.187 Sum_probs=274.2
Q ss_pred cchHHHHHHhhhCCCCccccccCCCCCCccccccCCCCCCCCCCceeecCCCCcchHHHHHHHhhcCchhhhhccCCCCC
Q 019890 37 QTLAGLRARLASESPALSDFIDLQSNSSYSVEVGTKKKPLPKPKWMKESIPGGDKYVQIKKKLRELKLHTVCEEAKCPNL 116 (334)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~P~wlk~~~p~~~~~~~~~~~l~~~~L~Tvceea~cpni 116 (334)
+.++.|+.+++..||+|.+|++.... ..+.+.+....+||+|||+++|.|++|.+++++|++++||||||||+||||
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~p~wl~~~~~~~~~~~~~~~~~~~~~l~tvc~~a~cpn~ 89 (349)
T PLN02428 13 QTLAALRARLASESPSLGDFVSLGPY---TLGSYGRDKPLPKPKWLRQRAPGGEKYTEIKEKLRELKLNTVCEEAQCPNI 89 (349)
T ss_pred chhhHHHHhhccCCCchHhhhcCCcc---cccccccCCCCCCCcceeecCCCCchHHHHHHHHHHCCCceeecCCCCCCh
Confidence 34888999999899999999985322 122234445568999999999999999999999999999999999999999
Q ss_pred cccccCCCCCcceEEEEeecCCCCCCCCCcccCCCCCCCCCCchhHHHHHHHHHHCCCcEEEEeeecCCCCCCchHHHHH
Q 019890 117 GECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRAPPPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFA 196 (334)
Q Consensus 117 ~ec~~~~~~~~~Tatfm~igdgCtr~C~FC~V~~~r~p~~ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa 196 (334)
+|||++|+++++|||||++||+|+++|+||+|++.++|.+.+++||+++|+++.++|++|||||||++||++|+|+++|+
T Consensus 90 ~ec~~~~~~~~~taT~milg~gCtr~CrFCav~~~~~p~~~d~~Ep~~vA~~v~~~Glk~vvltSg~rddl~D~ga~~~~ 169 (349)
T PLN02428 90 GECWNGGGTGTATATIMILGDTCTRGCRFCAVKTSRTPPPPDPDEPENVAEAIASWGVDYVVLTSVDRDDLPDGGSGHFA 169 (349)
T ss_pred HHhhCCCCCCCceEEEEEecCCCCCCCCCCcCCCCCCCCCCChhhHHHHHHHHHHcCCCEEEEEEcCCCCCCcccHHHHH
Confidence 99999999999999999999999999999999988867778999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCCCceeee-------------eccccccccccchhhHHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCcce
Q 019890 197 QTVRKLKELKPNMLIEAL-------------VAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTL 263 (334)
Q Consensus 197 ~lIr~Ik~~~P~i~vE~L-------------l~~ag~dv~~HnlETv~~l~~~Vr~r~~tye~sL~vL~~ak~~~p~Gl~ 263 (334)
++|++|++..|++.++++ |+++|+|+|+||+||++++|+.|++++++|+++|++|+.+++.+|+ +.
T Consensus 170 elir~Ir~~~P~i~Ie~L~pdf~~d~elL~~L~eAG~d~i~hnlETv~rL~~~Ir~~~~sye~~Le~L~~ak~~~pG-i~ 248 (349)
T PLN02428 170 ETVRRLKQLKPEILVEALVPDFRGDLGAVETVATSGLDVFAHNIETVERLQRIVRDPRAGYKQSLDVLKHAKESKPG-LL 248 (349)
T ss_pred HHHHHHHHhCCCcEEEEeCccccCCHHHHHHHHHcCCCEEccCccCcHHHHHHhcCCCCCHHHHHHHHHHHHHhCCC-Ce
Confidence 999999999999888886 7899999999999999999999995589999999999999999885 99
Q ss_pred EeeceEEecCCCHHHHHHHHHHHHHcCCcEEeeccCcCCCCCCCcccccCCHHHHHHHHHHHHHh---hcCCCC
Q 019890 264 TKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMPVSEYITPEAFERYRALGMEM---VSGSGP 334 (334)
Q Consensus 264 tkTgiMVGlGETdEE~~etl~~Lre~gvd~vtigqYlrP~~~h~~v~~yv~P~~f~~~~~~a~~~---~~~~~~ 334 (334)
++|+||||||||+||+++++++|++++||+++|||||||++.|+||.+||+|++|++|+++|++| +-+|||
T Consensus 249 tkSg~MvGLGET~Edv~e~l~~Lrelgvd~vtigqyL~Ps~~h~~v~~~v~p~~f~~~~~~~~~~gf~~v~sgp 322 (349)
T PLN02428 249 TKTSIMLGLGETDEEVVQTMEDLRAAGVDVVTFGQYLRPTKRHLPVKEYVTPEKFEFWREYGEEMGFRYVASGP 322 (349)
T ss_pred EEEeEEEecCCCHHHHHHHHHHHHHcCCCEEeeccccCCCcceeeeecccCHHHHHHHHHHHHHcCCceEEecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999 678998
No 5
>TIGR00510 lipA lipoate synthase. The family shows strong sequence conservation.
Probab=100.00 E-value=3.4e-79 Score=587.88 Aligned_cols=258 Identities=50% Similarity=0.909 Sum_probs=247.3
Q ss_pred cCCCCCCCCCCceeecCCCCcchHHHHHHHhhcCchhhhhccCCCCCcccccCCCCCcceEEEEeecCCCCCCCCCcccC
Q 019890 70 GTKKKPLPKPKWMKESIPGGDKYVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVK 149 (334)
Q Consensus 70 ~~~~~~~r~P~wlk~~~p~~~~~~~~~~~l~~~~L~Tvceea~cpni~ec~~~~~~~~~Tatfm~igdgCtr~C~FC~V~ 149 (334)
.+++...+||+|||+++|.|++|.+++++|++++||||||||+||||+|||+++ |||||+|||+|+++|+||+|+
T Consensus 9 ~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~~l~tvc~~a~cpn~~ec~~~~-----tatfm~i~~gC~~~C~FC~v~ 83 (302)
T TIGR00510 9 PNKEILLRKPEWLKIKLPLGTVIAQIKNTMKNKGLHTVCEEASCPNLTECWNHG-----TATFMILGDICTRRCPFCDVA 83 (302)
T ss_pred cccCccCCCCcceEecCCCCchHHHHHHHHHHCCCceeecCCCCCCcccccCCC-----EEEEEecCcCcCCCCCcCCcc
Confidence 345566789999999999999999999999999999999999999999999998 999999999999999999999
Q ss_pred CCCCCCCCCchhHHHHHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhCCCCceeee-------------ec
Q 019890 150 TSRAPPPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEAL-------------VA 216 (334)
Q Consensus 150 ~~r~p~~ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~P~i~vE~L-------------l~ 216 (334)
++|++.+.+++||.++|++++++|++|||||||++||++|+|+.+|+++|++|++..|++.|+++ ++
T Consensus 84 ~~rg~~~~~~eei~~~a~~~~~~GlkevvLTsv~~ddl~d~g~~~l~~li~~I~~~~p~i~Ievl~~d~~g~~e~l~~l~ 163 (302)
T TIGR00510 84 HGRNPLPPDPEEPAKLAETIKDMGLKYVVITSVDRDDLEDGGASHLAECIEAIREKLPNIKIETLVPDFRGNIAALDILL 163 (302)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEeecCCCcccccHHHHHHHHHHHHhcCCCCEEEEeCCcccCCHHHHHHHH
Confidence 98877678999999999999999999999999999999999999999999999998898888876 78
Q ss_pred cccccccccchhhHHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCcceEeeceEEecCCCHHHHHHHHHHHHHcCCcEEee
Q 019890 217 KSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTF 296 (334)
Q Consensus 217 ~ag~dv~~HnlETv~~l~~~Vr~r~~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGlGETdEE~~etl~~Lre~gvd~vti 296 (334)
++|+|+|+||+||++++|++|| ++++|+++|++|+++++..|+ +.++||||||||||+||++++|++|+++|+|+++|
T Consensus 164 ~aG~dv~~hnlEt~~~l~~~vr-r~~t~e~~Le~l~~ak~~~pg-i~~~TgiIVGlGETeee~~etl~~Lrelg~d~v~i 241 (302)
T TIGR00510 164 DAPPDVYNHNLETVERLTPFVR-PGATYRWSLKLLERAKEYLPN-LPTKSGIMVGLGETNEEIKQTLKDLRDHGVTMVTL 241 (302)
T ss_pred HcCchhhcccccchHHHHHHhC-CCCCHHHHHHHHHHHHHhCCC-CeecceEEEECCCCHHHHHHHHHHHHhcCCCEEEe
Confidence 8999999999999999999999 799999999999999999986 99999999999999999999999999999999999
Q ss_pred ccCcCCCCCCCcccccCCHHHHHHHHHHHHHh---hcCCCC
Q 019890 297 GQYMRPSKRHMPVSEYITPEAFERYRALGMEM---VSGSGP 334 (334)
Q Consensus 297 gqYlrP~~~h~~v~~yv~P~~f~~~~~~a~~~---~~~~~~ 334 (334)
||||||+++|+||.+|++|++|++|+++|++| +-+|||
T Consensus 242 gqYl~p~~~~~~v~~~~~p~~f~~~~~~a~~~gf~~v~~~p 282 (302)
T TIGR00510 242 GQYLRPSRRHLPVKRYVSPEEFDYYRSVALEMGFLHAACGP 282 (302)
T ss_pred ecccCCCCCCCccccCCCHHHHHHHHHHHHHcCChheEecc
Confidence 99999999999999999999999999999999 678998
No 6
>PRK12928 lipoyl synthase; Provisional
Probab=100.00 E-value=9.6e-71 Score=526.69 Aligned_cols=253 Identities=47% Similarity=0.841 Sum_probs=242.4
Q ss_pred CCCCCCCceeecCCCCcchHHHHHHHhhcCchhhhhccCCCCCcccccCCCCCcceEEEEeecCCCCCCCCCcccCCCCC
Q 019890 74 KPLPKPKWMKESIPGGDKYVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRA 153 (334)
Q Consensus 74 ~~~r~P~wlk~~~p~~~~~~~~~~~l~~~~L~Tvceea~cpni~ec~~~~~~~~~Tatfm~igdgCtr~C~FC~V~~~r~ 153 (334)
...+||+|||+++|+|++|.+++.++++++|||||++|+|||+++||+++ |+|||++||+|+++|+||+|++++
T Consensus 10 ~~~~~p~w~~~~~~~~~~~~~~~~l~~~~~l~tv~~~A~~~~~~~~~~~~-----~~tfv~is~gC~~~C~FCa~~~g~- 83 (290)
T PRK12928 10 PVERLPEWLRAPIGKASELETVQRLVKQRRLHTICEEARCPNRGECYAQG-----TATFLIMGSICTRRCAFCQVDKGR- 83 (290)
T ss_pred CCCCCCcceeecCCCChhHHHHHHHHHcCCHHHHHHHhCCCcccccCCCC-----EEEEEEecccccCcCCCCCccCCC-
Confidence 45689999999999999999999999999999999999999999999988 999999999999999999999976
Q ss_pred CCCCCchhHHHHHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhCCCCceeee--------------ecccc
Q 019890 154 PPPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEAL--------------VAKSG 219 (334)
Q Consensus 154 p~~ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~P~i~vE~L--------------l~~ag 219 (334)
+.+++++||.++|++++++|++||+|||+++||++|+|+.+|+++|++|++..|++.|+++ ++++|
T Consensus 84 ~~~~~~eei~~~a~~~~~~G~keivitg~~~dDl~d~g~~~~~ell~~Ik~~~p~~~I~~ltp~~~~~~~e~L~~l~~Ag 163 (290)
T PRK12928 84 PMPLDPDEPERVAEAVAALGLRYVVLTSVARDDLPDGGAAHFVATIAAIRARNPGTGIEVLTPDFWGGQRERLATVLAAK 163 (290)
T ss_pred CCCCCHHHHHHHHHHHHHCCCCEEEEEEEeCCcccccCHHHHHHHHHHHHhcCCCCEEEEeccccccCCHHHHHHHHHcC
Confidence 6679999999999999999999999999999999999999999999999998898877774 66899
Q ss_pred ccccccchhhHHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCcceEeeceEEecCCCHHHHHHHHHHHHHcCCcEEeeccC
Q 019890 220 LNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQY 299 (334)
Q Consensus 220 ~dv~~HnlETv~~l~~~Vr~r~~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGlGETdEE~~etl~~Lre~gvd~vtigqY 299 (334)
+++++||+||++++++.|+ ++++|++++++++.+++..|+ +.++|+||||||||+||++++|++|+++++|.++||||
T Consensus 164 ~~i~~hnlEt~~~vl~~m~-r~~t~e~~le~l~~ak~~gp~-i~~~s~iIvG~GET~ed~~etl~~Lrel~~d~v~i~~Y 241 (290)
T PRK12928 164 PDVFNHNLETVPRLQKAVR-RGADYQRSLDLLARAKELAPD-IPTKSGLMLGLGETEDEVIETLRDLRAVGCDRLTIGQY 241 (290)
T ss_pred chhhcccCcCcHHHHHHhC-CCCCHHHHHHHHHHHHHhCCC-ceecccEEEeCCCCHHHHHHHHHHHHhcCCCEEEEEcC
Confidence 9999999999999999999 789999999999999999886 99999999999999999999999999999999999999
Q ss_pred cCCCCCCCcccccCCHHHHHHHHHHHHHh---hcCCCC
Q 019890 300 MRPSKRHMPVSEYITPEAFERYRALGMEM---VSGSGP 334 (334)
Q Consensus 300 lrP~~~h~~v~~yv~P~~f~~~~~~a~~~---~~~~~~ 334 (334)
|||+++|+||.+||+|++|++|+++|++| +-+|||
T Consensus 242 l~p~~~~~~v~~~~~~~~f~~~~~~~~~~g~~~~~~~p 279 (290)
T PRK12928 242 LRPSLAHLPVQRYWTPEEFEALGQIARELGFSHVRSGP 279 (290)
T ss_pred CCCCccCCceeeccCHHHHHHHHHHHHHcCCceeEecC
Confidence 99999999999999999999999999999 678888
No 7
>PRK05481 lipoyl synthase; Provisional
Probab=100.00 E-value=1.2e-55 Score=422.04 Aligned_cols=252 Identities=55% Similarity=0.996 Sum_probs=238.7
Q ss_pred CCCCCCceeecCCCCcchHHHHHHHhhcCchhhhhccCCCCCcccccCCCCCcceEEEEeecCCCCCCCCCcccCCCCCC
Q 019890 75 PLPKPKWMKESIPGGDKYVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRAP 154 (334)
Q Consensus 75 ~~r~P~wlk~~~p~~~~~~~~~~~l~~~~L~Tvceea~cpni~ec~~~~~~~~~Tatfm~igdgCtr~C~FC~V~~~r~p 154 (334)
..++|+|||+++|.|++|.+...+++..+|||+|++|+|||+.+||.++ ++|||+++|||+++|+||+|+..+ +
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~a~~~~~~~~~~~~-----~~~fi~is~GC~~~C~FC~i~~~r-~ 77 (289)
T PRK05481 4 VARKPDWLRVKLPTGEEYTEIKKLLRELGLHTVCEEASCPNIGECWSRG-----TATFMILGDICTRRCPFCDVATGR-P 77 (289)
T ss_pred CCCCCcceeecCCCChhHHHHHHHHHhCChHHHHHhhCCCcchhccCCC-----eEEEEEecccccCCCCCceeCCCC-C
Confidence 4569999999999999999999999999999999999999999999987 999999999999999999999987 4
Q ss_pred CCCCchhHHHHHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhCCCCceeee-------------ecccccc
Q 019890 155 PPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEAL-------------VAKSGLN 221 (334)
Q Consensus 155 ~~ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~P~i~vE~L-------------l~~ag~d 221 (334)
.+++++||+++|+.+.+.|+++|+|||++.+|+++.|..+|+++|+.|++..|++.|+++ ++++|++
T Consensus 78 ~s~~~eeI~~ea~~l~~~G~kEI~L~gg~~~d~~~~~~~~l~~Ll~~I~~~~p~irI~~l~~~~~~~~e~L~~l~~ag~~ 157 (289)
T PRK05481 78 LPLDPDEPERVAEAVARMGLKYVVITSVDRDDLPDGGAQHFAETIRAIRELNPGTTIEVLIPDFRGRMDALLTVLDARPD 157 (289)
T ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEEEeeCCCcccccHHHHHHHHHHHHhhCCCcEEEEEccCCCCCHHHHHHHHhcCcc
Confidence 579999999999999999999999999999888877788999999999988888777766 5689999
Q ss_pred ccccchhhHHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCcceEeeceEEecCCCHHHHHHHHHHHHHcCCcEEeeccCcC
Q 019890 222 VFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMR 301 (334)
Q Consensus 222 v~~HnlETv~~l~~~Vr~r~~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGlGETdEE~~etl~~Lre~gvd~vtigqYlr 301 (334)
+++|++|+++++++.|+ |++++++++++++.+++.+|+ +.++|++|||||||+||++++|++|+++++|.+++|+|++
T Consensus 158 i~~~~~ets~~vlk~m~-r~~t~e~~le~i~~ar~~~pg-i~~~t~~IvGfGET~ed~~~tl~~lrel~~d~v~if~Ys~ 235 (289)
T PRK05481 158 VFNHNLETVPRLYKRVR-PGADYERSLELLKRAKELHPG-IPTKSGLMVGLGETDEEVLEVMDDLRAAGVDILTIGQYLQ 235 (289)
T ss_pred eeeccccChHHHHHHhC-CCCCHHHHHHHHHHHHHhCCC-CeEeeeeEEECCCCHHHHHHHHHHHHhcCCCEEEEEccCC
Confidence 99999999999999999 799999999999999999996 9999999999999999999999999999999999999999
Q ss_pred CCCCCCcccccCCHHHHHHHHHHHHHh---hcCCCC
Q 019890 302 PSKRHMPVSEYITPEAFERYRALGMEM---VSGSGP 334 (334)
Q Consensus 302 P~~~h~~v~~yv~P~~f~~~~~~a~~~---~~~~~~ 334 (334)
|..+|++|.+++.++.++++.++++++ +-+|||
T Consensus 236 pa~k~~~v~~~~k~~r~~~l~~~~~~i~~~~~~~~~ 271 (289)
T PRK05481 236 PSRKHLPVERYVTPEEFDEYKEIALELGFLHVASGP 271 (289)
T ss_pred CccccCCCCCcCCHHHHHHHHHHHHHcCchheEecC
Confidence 999889999999999999999999999 568888
No 8
>COG0621 MiaB 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.1e-31 Score=269.13 Aligned_cols=232 Identities=19% Similarity=0.356 Sum_probs=181.2
Q ss_pred CCcchHHHHHHHhhc----Cc----hhhhhccCCCCCcccccCCCCCcceEEEEeecCCCCCCCCCcccCCCCCC-CCCC
Q 019890 88 GGDKYVQIKKKLREL----KL----HTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRAP-PPPD 158 (334)
Q Consensus 88 ~~~~~~~~~~~l~~~----~L----~Tvceea~cpni~ec~~~~~~~~~Tatfm~igdgCtr~C~FC~V~~~r~p-~~ld 158 (334)
+..++.++...+.+. .- .+.=+...-.++...+.++ +.+|++|++||+++|+||+||+.||. .+.+
T Consensus 100 G~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~A~v~I~eGCn~~CtfCiiP~~RG~~rSr~ 174 (437)
T COG0621 100 GPQNKERLPEAIEKALRGKKEFVVVLSFPEEEKFDKLPPRREGG-----VRAFVKIQEGCNKFCTFCIIPYARGKERSRP 174 (437)
T ss_pred CCccHHHHHHHHHHHhhcccccccccccccccccccCCCCcCCC-----eEEEEEhhcCcCCCCCeeeeeccCCCccCCC
Confidence 346677765555532 11 1222223334444456666 99999999999999999999999974 5789
Q ss_pred chhHHHHHHHHHHCCCcEEEEeeecC----CCCCCchHHHHHHHHHHHHhhCCCC-ceee-----e--------eccccc
Q 019890 159 PDEPTNVAEAIASWGLDYVVITSVDR----DDLADQGSGHFAQTVRKLKELKPNM-LIEA-----L--------VAKSGL 220 (334)
Q Consensus 159 ~~Ep~~~A~av~~~GlkeVVLTSv~r----dDl~d~Ga~~fa~lIr~Ik~~~P~i-~vE~-----L--------l~~ag~ 220 (334)
+++|+++++.+.+.|++||+|||+|. .|++++ ...|++|++.|.+ .|++ .|.+ . +.+.++
T Consensus 175 ~e~Il~ev~~Lv~~G~kEI~L~gqdv~aYG~D~~~~-~~~l~~Ll~~l~~-I~G~~riR~~~~~P~~~~d~lI~~~~~~~ 252 (437)
T COG0621 175 PEDILKEVKRLVAQGVKEIVLTGQDVNAYGKDLGGG-KPNLADLLRELSK-IPGIERIRFGSSHPLEFTDDLIEAIAETP 252 (437)
T ss_pred HHHHHHHHHHHHHCCCeEEEEEEEehhhccccCCCC-ccCHHHHHHHHhc-CCCceEEEEecCCchhcCHHHHHHHhcCC
Confidence 99999999999999999999999984 344432 4569999999988 4652 2222 1 566677
Q ss_pred cccccc---hhh-HHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCcceEeeceEEec-CCCHHHHHHHHHHHHHcCCcEEe
Q 019890 221 NVFAHN---IET-VEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC-GETPDQVVSTMEKVRAAGVDVMT 295 (334)
Q Consensus 221 dv~~Hn---lET-v~~l~~~Vr~r~~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGl-GETdEE~~etl~~Lre~gvd~vt 295 (334)
.+++|. ++. +++++++|+ |+|+-++++++++++|+.+|+ +.++|+||||| |||+|||++||++++++++|.++
T Consensus 253 kv~~~lHlPvQsGsd~ILk~M~-R~yt~e~~~~~i~k~R~~~Pd-~~i~tDiIVGFPgETeedFe~tl~lv~e~~fd~~~ 330 (437)
T COG0621 253 KVCPHLHLPVQSGSDRILKRMK-RGYTVEEYLEIIEKLRAARPD-IAISTDIIVGFPGETEEDFEETLDLVEEVRFDRLH 330 (437)
T ss_pred cccccccCccccCCHHHHHHhC-CCcCHHHHHHHHHHHHHhCCC-ceEeccEEEECCCCCHHHHHHHHHHHHHhCCCEEe
Confidence 888876 454 699999999 999999999999999999999 99999999999 99999999999999999999999
Q ss_pred eccCc-CCCCCCCcccccCCHHH----HHHHHHHHHHh
Q 019890 296 FGQYM-RPSKRHMPVSEYITPEA----FERYRALGMEM 328 (334)
Q Consensus 296 igqYl-rP~~~h~~v~~yv~P~~----f~~~~~~a~~~ 328 (334)
+|+|+ ||++......+.|+-+. ..++.++.+++
T Consensus 331 ~F~YSpRpGTpAa~~~~qvp~~vkkeR~~~L~~l~~~~ 368 (437)
T COG0621 331 VFKYSPRPGTPAALMPDQVPEEVKKERLRRLQELQQQI 368 (437)
T ss_pred eeecCCCCCCccccCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 99998 89888775566776654 44444444443
No 9
>COG0502 BioB Biotin synthase and related enzymes [Coenzyme metabolism]
Probab=99.94 E-value=1.3e-26 Score=225.20 Aligned_cols=184 Identities=16% Similarity=0.318 Sum_probs=147.4
Q ss_pred eEEEEeecCCC-CCCCCCcccCCCCC-----CCCCCchhHHHHHHHHHHCC-CcEEEEeeecCCCCCCchHHHHHHHHHH
Q 019890 129 TATIMILGDTC-TRGCRFCNVKTSRA-----PPPPDPDEPTNVAEAIASWG-LDYVVITSVDRDDLADQGSGHFAQTVRK 201 (334)
Q Consensus 129 Tatfm~igdgC-tr~C~FC~V~~~r~-----p~~ld~~Ep~~~A~av~~~G-lkeVVLTSv~rdDl~d~Ga~~fa~lIr~ 201 (334)
-.++|-+.+|| +++|.||+++.... ...++++|+++.|+++++.| .++++++|+. + .++...++.+.|+.
T Consensus 50 l~~ii~iktg~c~edC~yC~qS~~~~~~~~~~~l~~~eeIle~Ak~ak~~Ga~r~c~~aagr-~--~~~~~~~i~~~v~~ 126 (335)
T COG0502 50 LSTLISIKTGCCPEDCAYCSQSARYKTGVKARKLMEVEEILEAAKKAKAAGATRFCMGAAGR-G--PGRDMEEVVEAIKA 126 (335)
T ss_pred EEEEEEeecCCCCCCCCCccccccCcCCCchhhcCCHHHHHHHHHHHHHcCCceEEEEEecc-C--CCccHHHHHHHHHH
Confidence 44556566655 99999999986331 13478999999999999999 6667777764 3 33567789999999
Q ss_pred HHhhCCCCceeee-------------eccccccccccchhhHHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCcceEeece
Q 019890 202 LKELKPNMLIEAL-------------VAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSI 268 (334)
Q Consensus 202 Ik~~~P~i~vE~L-------------l~~ag~dv~~HnlETv~~l~~~Vr~r~~tye~sL~vL~~ak~~~p~Gl~tkTgi 268 (334)
|++... +|++ ++++|+|.|+||+||++++|+.|+ ++++|++++++|+.+|+. |+.++||+
T Consensus 127 Vk~~~~---le~c~slG~l~~eq~~~L~~aGvd~ynhNLeTs~~~y~~I~-tt~t~edR~~tl~~vk~~---Gi~vcsGg 199 (335)
T COG0502 127 VKEELG---LEVCASLGMLTEEQAEKLADAGVDRYNHNLETSPEFYENII-TTRTYEDRLNTLENVREA---GIEVCSGG 199 (335)
T ss_pred HHHhcC---cHHhhccCCCCHHHHHHHHHcChhheecccccCHHHHcccC-CCCCHHHHHHHHHHHHHc---CCccccce
Confidence 986432 3332 999999999999999999999999 699999999999999997 89999999
Q ss_pred EEecCCCHHHHHHHHHHHHHcC-CcEEeeccCcCCCCCCCcc--cccCCHHHHHHHHHHHH
Q 019890 269 MLGCGETPDQVVSTMEKVRAAG-VDVMTFGQYMRPSKRHMPV--SEYITPEAFERYRALGM 326 (334)
Q Consensus 269 MVGlGETdEE~~etl~~Lre~g-vd~vtigqYlrP~~~h~~v--~~yv~P~~f~~~~~~a~ 326 (334)
|||||||.||.++++..|++++ +|.|+|+.+. |.+- .|+ ..-++| |+.++-+|.
T Consensus 200 I~GlGEs~eDri~~l~~L~~l~~pdsVPIn~l~-P~~G-TPle~~~~~~~--~e~lk~IA~ 256 (335)
T COG0502 200 IVGLGETVEDRAELLLELANLPTPDSVPINFLN-PIPG-TPLENAKPLDP--FEFLKTIAV 256 (335)
T ss_pred EecCCCCHHHHHHHHHHHHhCCCCCeeeeeeec-CCCC-CccccCCCCCH--HHHHHHHHH
Confidence 9999999999999999999999 9999999554 4433 334 345566 555665554
No 10
>PRK08508 biotin synthase; Provisional
Probab=99.93 E-value=5.2e-25 Score=209.61 Aligned_cols=183 Identities=17% Similarity=0.280 Sum_probs=149.1
Q ss_pred cCCCCCCCCCcccCCCC-C--C-CC-CCchhHHHHHHHHHHCCCcEEEEe-eecCCCCCCchHHHHHHHHHHHHhhCCCC
Q 019890 136 GDTCTRGCRFCNVKTSR-A--P-PP-PDPDEPTNVAEAIASWGLDYVVIT-SVDRDDLADQGSGHFAQTVRKLKELKPNM 209 (334)
Q Consensus 136 gdgCtr~C~FC~V~~~r-~--p-~~-ld~~Ep~~~A~av~~~GlkeVVLT-Sv~rdDl~d~Ga~~fa~lIr~Ik~~~P~i 209 (334)
+.+|+.+|+||+++... . + .+ ++++|+.+.|+.+.+.|+++++++ |+.. +++...+++.++++.||+..|++
T Consensus 14 s~gC~~~C~FCa~~~~~~~~~~~y~~~s~eeI~~~a~~a~~~g~~~~~lv~sg~~--~~~~~~e~~~ei~~~ik~~~p~l 91 (279)
T PRK08508 14 SGNCKEDCKYCTQSAHYKADIKRYKRKDIEQIVQEAKMAKANGALGFCLVTSGRG--LDDKKLEYVAEAAKAVKKEVPGL 91 (279)
T ss_pred cCCCCCCCcCCCCcccCCCCCccccCCCHHHHHHHHHHHHHCCCCEEEEEeccCC--CCcccHHHHHHHHHHHHhhCCCc
Confidence 56999999999997522 1 1 23 699999999999999999999884 5543 34456789999999999888877
Q ss_pred ceeee-----------eccccccccccchhhHHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCcceEeeceEEecCCCHHH
Q 019890 210 LIEAL-----------VAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQ 278 (334)
Q Consensus 210 ~vE~L-----------l~~ag~dv~~HnlETv~~l~~~Vr~r~~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGlGETdEE 278 (334)
.+... |+++|+|.++||+||.+++|+.++ .+++|++++++++.+++. |+.++|++|+|+|||+||
T Consensus 92 ~i~~s~G~~~~e~l~~Lk~aGld~~~~~lEt~~~~~~~i~-~~~~~~~~l~~i~~a~~~---Gi~v~sg~I~GlGEt~ed 167 (279)
T PRK08508 92 HLIACNGTASVEQLKELKKAGIFSYNHNLETSKEFFPKIC-TTHTWEERFQTCENAKEA---GLGLCSGGIFGLGESWED 167 (279)
T ss_pred EEEecCCCCCHHHHHHHHHcCCCEEcccccchHHHhcCCC-CCCCHHHHHHHHHHHHHc---CCeecceeEEecCCCHHH
Confidence 65432 899999999999999999999999 589999999999999997 799999999999999999
Q ss_pred HHHHHHHHHHcCCcEEeeccCcCCCCCCCcc-cccCCHHHHHHHHHHHH
Q 019890 279 VVSTMEKVRAAGVDVMTFGQYMRPSKRHMPV-SEYITPEAFERYRALGM 326 (334)
Q Consensus 279 ~~etl~~Lre~gvd~vtigqYlrP~~~h~~v-~~yv~P~~f~~~~~~a~ 326 (334)
+++++.+|++++++.++++ |+.|.+. +|. ....+|++..+.-.+++
T Consensus 168 ~~~~l~~lr~L~~~svpl~-~~~p~~~-t~~~~~~~~~~~~lr~iAv~R 214 (279)
T PRK08508 168 RISFLKSLASLSPHSTPIN-FFIPNPA-LPLKAPTLSADEALEIVRLAK 214 (279)
T ss_pred HHHHHHHHHcCCCCEEeeC-CcCCCCC-CCCCCCCCCHHHHHHHHHHHH
Confidence 9999999999999999997 5666554 232 23466655444444444
No 11
>TIGR03700 mena_SCO4494 putative menaquinone biosynthesis protein, SCO4494 family. Members of this protein family appear to be involved in menaquinone biosynthesis by an alternate pathway via futalosine, based on close phylogenetic correlation with known markers of the futalosine pathway, gene clustering in many organisms, and paralogy with the SCO4550 protein.
Probab=99.93 E-value=5.5e-25 Score=215.48 Aligned_cols=190 Identities=20% Similarity=0.331 Sum_probs=153.9
Q ss_pred EEeecCCCCCCCCCcccCCCCC-C--CCCCchhHHHHHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhCCC
Q 019890 132 IMILGDTCTRGCRFCNVKTSRA-P--PPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPN 208 (334)
Q Consensus 132 fm~igdgCtr~C~FC~V~~~r~-p--~~ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~P~ 208 (334)
++.++++|+++|+||++....+ + ..+++||+.+.|+++.+.|+++|+|+|++..+ ...+++.++++.|++..|+
T Consensus 51 ~in~Tn~C~~~C~FCa~~~~~~~~~~y~l~~eeI~~~a~~~~~~G~~~v~l~~G~~p~---~~~~~~~e~i~~Ik~~~p~ 127 (351)
T TIGR03700 51 HLNYTNICVNGCAFCAFQRERGEPGAYAMSLEEIVARVKEAYAPGATEVHIVGGLHPN---LPFEWYLDMIRTLKEAYPD 127 (351)
T ss_pred CcccccccccCCccCceeCCCCCcccCCCCHHHHHHHHHHHHHCCCcEEEEecCCCCC---CCHHHHHHHHHHHHHHCCC
Confidence 3557999999999999986442 1 24799999999999999999999999987643 4568999999999999898
Q ss_pred Cceee--------------------e--ecccccccccc-chhh-HHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCcceE
Q 019890 209 MLIEA--------------------L--VAKSGLNVFAH-NIET-VEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLT 264 (334)
Q Consensus 209 i~vE~--------------------L--l~~ag~dv~~H-nlET-v~~l~~~Vr~r~~tye~sL~vL~~ak~~~p~Gl~t 264 (334)
+.+.. + |+++|+|.++| ++|+ .+++++.+++.+.++++++++++.+++. |+.+
T Consensus 128 i~i~~~~~~ei~~~~~~~g~~~~e~l~~LkeAGld~~~~~g~E~~~~~v~~~i~~~~~~~~~~l~~i~~a~~~---Gi~~ 204 (351)
T TIGR03700 128 LHVKAFTAVEIHHFSKISGLPTEEVLDELKEAGLDSMPGGGAEIFAEEVRQQICPEKISAERWLEIHRTAHEL---GLKT 204 (351)
T ss_pred ceEEeCCHHHHHHHHHHcCCCHHHHHHHHHHcCCCcCCCCcccccCHHHHhhcCCCCCCHHHHHHHHHHHHHc---CCCc
Confidence 76653 1 89999999998 5998 5999999994345789999999999997 7999
Q ss_pred eeceEEecCCCHHHHHHHHHHHHHcCCcEEeec----cCcCCCCCCCcccccCCHHHHHHHHHHHHH
Q 019890 265 KTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFG----QYMRPSKRHMPVSEYITPEAFERYRALGME 327 (334)
Q Consensus 265 kTgiMVGlGETdEE~~etl~~Lre~gvd~vtig----qYlrP~~~h~~v~~yv~P~~f~~~~~~a~~ 327 (334)
+|++|+|+|||++|++++|..|++++++..++. +..+|...++....+..+..++.++.+|..
T Consensus 205 ~sg~i~GlgEt~edrv~~l~~Lr~l~~~~~~f~~fiP~~f~~~~tpl~~~~~~~~~~~e~lr~iA~~ 271 (351)
T TIGR03700 205 NATMLYGHIETPAHRVDHMLRLRELQDETGGFQAFIPLAFQPDNNRLNRLLAKGPTGLDDLKTLAVS 271 (351)
T ss_pred ceEEEeeCCCCHHHHHHHHHHHHHhhHhhCCceEEEeecccCCCCcccCCCCCCCCHHHHHHHHHHH
Confidence 999999999999999999999999999874443 333344444543322445558888888864
No 12
>PRK05927 hypothetical protein; Provisional
Probab=99.92 E-value=1.6e-24 Score=212.78 Aligned_cols=227 Identities=15% Similarity=0.219 Sum_probs=164.8
Q ss_pred CCCCcchHHHHHHHhhcCchhhhhccCCCCCcccccCCCCCcceEEEE-----eecCCCCCCCCCcccCCCCC-C--CCC
Q 019890 86 IPGGDKYVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIM-----ILGDTCTRGCRFCNVKTSRA-P--PPP 157 (334)
Q Consensus 86 ~p~~~~~~~~~~~l~~~~L~Tvceea~cpni~ec~~~~~~~~~Tatfm-----~igdgCtr~C~FC~V~~~r~-p--~~l 157 (334)
+|..-...+.-.+++...|..+++-|.=-.. ..|++. ..+|+ .++|.|..+|.||++....+ + ..+
T Consensus 3 ~~~~is~ee~l~L~~~~~l~~L~~~A~~iR~-~~~~G~-----~V~~i~n~~i~~Tn~C~~~C~fCaf~~~~~~~~~y~l 76 (350)
T PRK05927 3 LPARISFQEGLELFLYSPLEELQEHADSLRK-QRYPQN-----TVTYVLDANPNYTNICKIDCTFCAFYRKPHSSDAYLL 76 (350)
T ss_pred CccCCCHHHHHHHhcCCCHHHHHHHHHHHHH-HHcCCC-----eEEEEcccCCccchhhhcCCccCCccCCCCCcccccc
Confidence 3444455666666665566666666622111 223332 45554 35999999999999986432 1 257
Q ss_pred CchhHHHHHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhCCCCceeee----------------------e
Q 019890 158 DPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEAL----------------------V 215 (334)
Q Consensus 158 d~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~P~i~vE~L----------------------l 215 (334)
+++|+.+.++.+++.|+++++|||+.. ++.+.+++.++|+.||+..|++.+.++ |
T Consensus 77 s~eei~~~a~~~~~~G~~~i~i~gG~~---p~~~~e~~~~~i~~ik~~~p~l~~~~~s~~ei~~~~~~~G~~~~e~l~~L 153 (350)
T PRK05927 77 SFDEFRSLMQRYVSAGVKTVLLQGGVH---PQLGIDYLEELVRITVKEFPSLHPHFFSAVEIAHAAQVSGISTEQALERL 153 (350)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeCCCC---CCCCHHHHHHHHHHHHHHCCCCcccCCCHHHHHHHHHhcCCCHHHHHHHH
Confidence 999999999999999999999998875 456789999999999998898754332 8
Q ss_pred cccccccccc-chhhH-HHHHHhhcCCCCCHHHHHHHHHHHHHhCCCcceEeeceEEecCCCHHHHHHHHHHHHHcCCcE
Q 019890 216 AKSGLNVFAH-NIETV-EELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDV 293 (334)
Q Consensus 216 ~~ag~dv~~H-nlETv-~~l~~~Vr~r~~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGlGETdEE~~etl~~Lre~gvd~ 293 (334)
+++|++.|+| |+||. +.+++.+.+.+.+.++||++++.|++. |+.++||+|+|+|||.||+++++..||+++-+.
T Consensus 154 k~aGl~~l~g~~~Et~~~~~~~~~~p~k~~~~~rl~~i~~A~~l---Gi~~~sg~l~G~gEt~e~ri~~l~~Lr~lqd~~ 230 (350)
T PRK05927 154 WDAGQRTIPGGGAEILSERVRKIISPKKMGPDGWIQFHKLAHRL---GFRSTATMMFGHVESPEDILLHLQTLRDAQDEN 230 (350)
T ss_pred HHcCcccCCCCCchhCCHHHhhccCCCCCCHHHHHHHHHHHHHc---CCCcCceeEEeeCCCHHHHHHHHHHHHHhhHhh
Confidence 9999999999 99997 455555553344569999999999997 899999999999999999999999999999444
Q ss_pred EeeccCc--CCCCCCCcccc----cCCHHHHHHHHHHHH
Q 019890 294 MTFGQYM--RPSKRHMPVSE----YITPEAFERYRALGM 326 (334)
Q Consensus 294 vtigqYl--rP~~~h~~v~~----yv~P~~f~~~~~~a~ 326 (334)
-+|..|+ .|.+...|+.. ..++ .+.++.+|.
T Consensus 231 ~gf~~fIp~~~~~~~tpl~~~~~~~~s~--~e~Lr~iAv 267 (350)
T PRK05927 231 PGFYSFIPWSYKPGNTALGRRVPHQASP--ELYYRILAV 267 (350)
T ss_pred CCeeeeeecCcCCCCCccccCCCCCCCH--HHHHHHHHH
Confidence 4443343 12223344431 4556 445555554
No 13
>PRK08444 hypothetical protein; Provisional
Probab=99.92 E-value=2.8e-24 Score=211.31 Aligned_cols=187 Identities=17% Similarity=0.348 Sum_probs=154.5
Q ss_pred EeecCCCCCCCCCcccCCCCC---CCCCCchhHHHHHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhCCCC
Q 019890 133 MILGDTCTRGCRFCNVKTSRA---PPPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNM 209 (334)
Q Consensus 133 m~igdgCtr~C~FC~V~~~r~---p~~ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~P~i 209 (334)
+.++|.|.++|.||++....+ ...++++|+.+.|+.+++.|+++++|+|+.+. +...+++.++|+.||+..|++
T Consensus 53 In~TN~C~~~C~FCaf~~~~~~~~~y~ls~eeI~~~a~~a~~~G~~ei~iv~G~~p---~~~~e~y~e~ir~Ik~~~p~i 129 (353)
T PRK08444 53 INPTNICADVCKFCAFSAHRKNPNPYTMSHEEILEIVKNSVKRGIKEVHIVSAHNP---NYGYEWYLEIFKKIKEAYPNL 129 (353)
T ss_pred cccccccccCCccCCCccCCCCCccccCCHHHHHHHHHHHHHCCCCEEEEeccCCC---CCCHHHHHHHHHHHHHHCCCc
Confidence 458999999999999986442 23589999999999999999999999998754 345788999999999999998
Q ss_pred ceeee----------------------eccccccccccc-hhh-HHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCcceEe
Q 019890 210 LIEAL----------------------VAKSGLNVFAHN-IET-VEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTK 265 (334)
Q Consensus 210 ~vE~L----------------------l~~ag~dv~~Hn-lET-v~~l~~~Vr~r~~tye~sL~vL~~ak~~~p~Gl~tk 265 (334)
.+..+ |+++|+|.|+|+ .|+ ++++++.|+|.+...++|+++++.|+++ |+.++
T Consensus 130 ~i~a~s~~Ei~~~a~~~g~~~~e~l~~LkeAGl~~~~g~~aEi~~~~vr~~I~p~k~~~~~~~~i~~~a~~~---Gi~~~ 206 (353)
T PRK08444 130 HVKAMTAAEVDFLSRKFGKSYEEVLEDMLEYGVDSMPGGGAEIFDEEVRKKICKGKVSSERWLEIHKYWHKK---GKMSN 206 (353)
T ss_pred eEeeCCHHHHHHHHHHcCCCHHHHHHHHHHhCcccCCCCCchhcCHHHHhhhCCCCCCHHHHHHHHHHHHHc---CCCcc
Confidence 88762 899999999995 887 5999999995455668999999999997 89999
Q ss_pred eceEEecCCCHHHHHHHHHHHHHcCCcEEeeccCc----CCCCCCCcccccCCHHHHHHHHHHHHH
Q 019890 266 TSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYM----RPSKRHMPVSEYITPEAFERYRALGME 327 (334)
Q Consensus 266 TgiMVGlGETdEE~~etl~~Lre~gvd~vtigqYl----rP~~~h~~v~~yv~P~~f~~~~~~a~~ 327 (334)
||+|+|+|||.||+++++..||+++.+.++|+.|+ +|....+......+| .+.++.+|..
T Consensus 207 sg~l~G~gEt~edrv~hl~~Lr~Lq~~t~gf~~fIp~~f~~~~t~l~~~~~~~~--~e~Lr~iAi~ 270 (353)
T PRK08444 207 ATMLFGHIENREHRIDHMLRLRDLQDKTGGFNAFIPLVYQRENNYLKVEKFPSS--QEILKTIAIS 270 (353)
T ss_pred ceeEEecCCCHHHHHHHHHHHHHhccccCCceEEEecccCCCCCcCCCCCCCCH--HHHHHHHHHH
Confidence 99999999999999999999999999999988774 232233333345566 5666666653
No 14
>PRK14332 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.92 E-value=5.4e-24 Score=215.04 Aligned_cols=187 Identities=19% Similarity=0.273 Sum_probs=152.2
Q ss_pred eEEEEeecCCCCCCCCCcccCCCCCC-CCCCchhHHHHHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhCC
Q 019890 129 TATIMILGDTCTRGCRFCNVKTSRAP-PPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKP 207 (334)
Q Consensus 129 Tatfm~igdgCtr~C~FC~V~~~r~p-~~ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~P 207 (334)
+.+|++++.||+++|+||++|..+++ .+.+++++.++++.+.+.|+++|+|+++|...+... ...|++++++|.+...
T Consensus 154 ~~a~l~isrGC~~~CsFC~ip~~rG~~rsr~~e~Iv~Ei~~l~~~G~kei~l~~~~~~~y~~~-~~~l~~Ll~~l~~~~~ 232 (449)
T PRK14332 154 IQAFVTIMRGCNNFCTFCVVPYTRGRERSRDPKSIVREIQDLQEKGIRQVTLLGQNVNSYKEQ-STDFAGLIQMLLDETT 232 (449)
T ss_pred ceEEEEecCCcCCCCCCCCcccccCCcccCCHHHHHHHHHHHHHCCCeEEEEecccCCcccCC-cccHHHHHHHHhcCCC
Confidence 67899999999999999999987764 568999999999999999999999999986444322 2468899988865321
Q ss_pred C--C----------ceeee--ecccc--ccccccchhh-HHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCcceEeeceEE
Q 019890 208 N--M----------LIEAL--VAKSG--LNVFAHNIET-VEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIML 270 (334)
Q Consensus 208 ~--i----------~vE~L--l~~ag--~dv~~HnlET-v~~l~~~Vr~r~~tye~sL~vL~~ak~~~p~Gl~tkTgiMV 270 (334)
. + +-|++ +++++ ...+..-+|+ .+++++.|+ |+++.+++++.++.+++..|+ +.+.+++|+
T Consensus 233 ~~~ir~~~~~p~~~~~ell~~m~~~~~~~~~l~lgvQSgsd~vLk~m~-R~~t~~~~~~~i~~lr~~~p~-i~i~td~Iv 310 (449)
T PRK14332 233 IERIRFTSPHPKDFPDHLLSLMAKNPRFCPNIHLPLQAGNTRVLEEMK-RSYSKEEFLDVVKEIRNIVPD-VGITTDIIV 310 (449)
T ss_pred cceEEEECCCcccCCHHHHHHHHhCCCccceEEECCCcCCHHHHHhhC-CCCCHHHHHHHHHHHHHhCCC-CEEEEEEEe
Confidence 1 1 11222 44554 3344445787 599999999 899999999999999999887 899999999
Q ss_pred ec-CCCHHHHHHHHHHHHHcCCcEEeeccCc-CCCCCCC-cccccCCHHHH
Q 019890 271 GC-GETPDQVVSTMEKVRAAGVDVMTFGQYM-RPSKRHM-PVSEYITPEAF 318 (334)
Q Consensus 271 Gl-GETdEE~~etl~~Lre~gvd~vtigqYl-rP~~~h~-~v~~yv~P~~f 318 (334)
|| |||+|||.+++++++++++|.+++|+|+ +|+.... .+.+.+++++-
T Consensus 311 GfPgET~edf~~tl~~v~~l~~~~~~~f~ys~~~GT~a~~~~~~~v~~~~~ 361 (449)
T PRK14332 311 GFPNETEEEFEDTLAVVREVQFDMAFMFKYSEREGTMAKRKLPDNVPEEVK 361 (449)
T ss_pred eCCCCCHHHHHHHHHHHHhCCCCEEEEEEecCCCCChhHHhCcCCCCHHHH
Confidence 99 9999999999999999999999999997 8888766 46667887664
No 15
>PRK14340 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.92 E-value=4.7e-24 Score=215.17 Aligned_cols=198 Identities=16% Similarity=0.267 Sum_probs=158.3
Q ss_pred eEEEEeecCCCCCCCCCcccCCCCCC-CCCCchhHHHHHHHHHHCCCcEEEEeeecCCCCCC-chHHHHHHHHHHHHhhC
Q 019890 129 TATIMILGDTCTRGCRFCNVKTSRAP-PPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLAD-QGSGHFAQTVRKLKELK 206 (334)
Q Consensus 129 Tatfm~igdgCtr~C~FC~V~~~r~p-~~ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d-~Ga~~fa~lIr~Ik~~~ 206 (334)
+.+|+++++||+.+|+||++|..+++ .+.+++++.++++.+.+.|+++|+|+|+|-..+.| .....|.+++++|.+..
T Consensus 149 ~~a~l~isrGC~~~CsFC~ip~~rG~~rsr~~e~Vv~Ei~~l~~~G~~ei~l~~~~~~~y~d~~~~~~l~~Ll~~l~~~~ 228 (445)
T PRK14340 149 ISAFVPVMRGCNNMCAFCVVPFTRGRERSHPFASVLDEVRALAEAGYREITLLGQNVNSYSDPEAGADFAGLLDAVSRAA 228 (445)
T ss_pred cEEEEEeccCCCCCCCCCCcccccCCCcCCCHHHHHHHHHHHHHCCCeEEEEeecccchhhccCCCchHHHHHHHHhhcC
Confidence 68999999999999999999987764 46889999999999999999999999998543332 12245889999997654
Q ss_pred CCCceee------------e--eccc--cccccccchhh-HHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCcceEeeceE
Q 019890 207 PNMLIEA------------L--VAKS--GLNVFAHNIET-VEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIM 269 (334)
Q Consensus 207 P~i~vE~------------L--l~~a--g~dv~~HnlET-v~~l~~~Vr~r~~tye~sL~vL~~ak~~~p~Gl~tkTgiM 269 (334)
+...+.. + ++++ |...+.-.+|+ .+++++.|+ |+++.++.++.++.+++..|+ +.+.+++|
T Consensus 229 ~~~rir~~~~~p~~l~~ell~~~~~~~~g~~~l~iglQSgsd~vLk~m~-R~~t~~~~~~~v~~lr~~~pg-i~i~td~I 306 (445)
T PRK14340 229 PEMRIRFTTSHPKDISESLVRTIAARPNICNHIHLPVQSGSSRMLRRMN-RGHTIEEYLEKIALIRSAIPG-VTLSTDLI 306 (445)
T ss_pred CCcEEEEccCChhhcCHHHHHHHHhCCCCCCeEEECCCcCCHHHHHhcC-CCCCHHHHHHHHHHHHHhCCC-CEEeccEE
Confidence 4433332 1 4443 44555556887 589999999 899999999999999999887 99999999
Q ss_pred Eec-CCCHHHHHHHHHHHHHcCCcEEeeccCc-CCCCCCCc-ccccCCHHH----HHHHHHHHHHh
Q 019890 270 LGC-GETPDQVVSTMEKVRAAGVDVMTFGQYM-RPSKRHMP-VSEYITPEA----FERYRALGMEM 328 (334)
Q Consensus 270 VGl-GETdEE~~etl~~Lre~gvd~vtigqYl-rP~~~h~~-v~~yv~P~~----f~~~~~~a~~~ 328 (334)
+|| |||++||.+++++++++++|.+++|.|+ +|+..... +...|+++. ..++.+++.++
T Consensus 307 vGfPgET~edf~~tl~~~~~~~~~~~~~f~~sp~pGT~~~~~~~~~v~~~~~~~R~~~l~~l~~~~ 372 (445)
T PRK14340 307 AGFCGETEEDHRATLSLMEEVRFDSAFMFYYSVRPGTLAARTLPDDVPEEVKKRRLQEIIDLQNGI 372 (445)
T ss_pred EECCCCCHHHHHHHHHHHHhcCCCEEeeEEecCCCCChhhhhCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 999 9999999999999999999999999997 78887653 556787655 33444444443
No 16
>PRK14327 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.92 E-value=7e-24 Score=217.20 Aligned_cols=199 Identities=17% Similarity=0.278 Sum_probs=160.3
Q ss_pred ceEEEEeecCCCCCCCCCcccCCCCCC-CCCCchhHHHHHHHHHHCCCcEEEEeeecCCCCCC--ch-HHHHHHHHHHHH
Q 019890 128 ATATIMILGDTCTRGCRFCNVKTSRAP-PPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLAD--QG-SGHFAQTVRKLK 203 (334)
Q Consensus 128 ~Tatfm~igdgCtr~C~FC~V~~~r~p-~~ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d--~G-a~~fa~lIr~Ik 203 (334)
.+.+|+.|++||+++|+||++|..+++ ...++++++++++.+.+.|+++|+|+|+|-..+.. .+ ...|+++++.|.
T Consensus 211 ~~~a~v~I~~GC~~~CsFC~vp~~rG~~Rsr~~e~Ii~Ei~~l~~~G~keI~L~g~n~~~yg~d~~~~~~~l~~Ll~~I~ 290 (509)
T PRK14327 211 NIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQEVRHLARQGYKEITLLGQNVNAYGKDFEDIEYGLGDLMDEIR 290 (509)
T ss_pred CeEEEEEecCCCCCCCcCCcccccCCCCeeCCHHHHHHHHHHHHHCCCcEEEEEeeccccCcccccccchHHHHHHHHHH
Confidence 489999999999999999999987764 46889999999999999999999999998432221 01 235888999887
Q ss_pred hhC-CCC----------ceeee--ecccc--ccccccchhh-HHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCcceEeec
Q 019890 204 ELK-PNM----------LIEAL--VAKSG--LNVFAHNIET-VEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTS 267 (334)
Q Consensus 204 ~~~-P~i----------~vE~L--l~~ag--~dv~~HnlET-v~~l~~~Vr~r~~tye~sL~vL~~ak~~~p~Gl~tkTg 267 (334)
+.. +.+ +-|++ +.++| ...+...+|+ .+++++.|+ |+++.+++++.++++++.+|+ +.+.++
T Consensus 291 ~~~i~~ir~~s~~P~~i~deli~~m~~~g~~~~~l~lgvQSgsd~vLk~M~-R~~t~e~~~~~v~~lr~~~p~-i~i~td 368 (509)
T PRK14327 291 KIDIPRVRFTTSHPRDFDDHLIEVLAKGGNLVEHIHLPVQSGSTEVLKIMA-RKYTRESYLELVRKIKEAIPN-VALTTD 368 (509)
T ss_pred hCCCceEEEeecCcccCCHHHHHHHHhcCCccceEEeccCCCCHHHHHhcC-CCCCHHHHHHHHHHHHHhCCC-cEEeee
Confidence 641 111 11222 45555 3345556887 599999999 899999999999999999887 999999
Q ss_pred eEEec-CCCHHHHHHHHHHHHHcCCcEEeeccCc-CCCCCCCcccccCCHHH----HHHHHHHHHHh
Q 019890 268 IMLGC-GETPDQVVSTMEKVRAAGVDVMTFGQYM-RPSKRHMPVSEYITPEA----FERYRALGMEM 328 (334)
Q Consensus 268 iMVGl-GETdEE~~etl~~Lre~gvd~vtigqYl-rP~~~h~~v~~yv~P~~----f~~~~~~a~~~ 328 (334)
||+|| |||+|||.+++++++++++|.+++|.|+ +|++........|+++. +.++.+++.++
T Consensus 369 iIvGfPgET~edf~~Tl~~v~~l~~d~~~~f~ysprpGT~a~~~~~~vp~~vk~~R~~~l~~l~~~~ 435 (509)
T PRK14327 369 IIVGFPNETDEQFEETLSLYREVGFDHAYTFIYSPREGTPAAKMKDNVPMEVKKERLQRLNALVNEY 435 (509)
T ss_pred EEEeCCCCCHHHHHHHHHHHHHcCCCeEEEeeeeCCCCCchHhCcCCCCHHHHHHHHHHHHHHHHHH
Confidence 99999 9999999999999999999999999997 79888777778888864 55666666554
No 17
>TIGR03550 F420_cofG 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofG subunit. This model represents either a subunit or a domain, depending on whether or not the genes are fused, of a bifunctional protein that completes the synthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin, or FO. FO is the chromophore of coenzyme F(420), involved in methanogenesis in methanogenic archaea but found in certain other lineages as well. The chromophore also occurs as a cofactor in DNA photolyases in Cyanobacteria.
Probab=99.92 E-value=3.7e-24 Score=207.39 Aligned_cols=189 Identities=15% Similarity=0.205 Sum_probs=146.8
Q ss_pred EEEEeecCCCCCCCCCcccCCCCCC---CCCCchhHHHHHHHHHHCCCcEEEEeeecCCCCC-------------CchHH
Q 019890 130 ATIMILGDTCTRGCRFCNVKTSRAP---PPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLA-------------DQGSG 193 (334)
Q Consensus 130 atfm~igdgCtr~C~FC~V~~~r~p---~~ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~-------------d~Ga~ 193 (334)
..|+.++|+|+++|+||+++..++. ..++++|+.+.|+.+.+.|+++|+|||+...+.. +...+
T Consensus 5 n~~i~~tn~C~~~C~fCaf~~~~g~~~~~~l~~eeI~~~a~~~~~~G~~ei~l~~G~~p~~~~~~~~~~l~~~~~~~~~~ 84 (322)
T TIGR03550 5 NVFIPLTRLCRNRCGYCTFRRPPGELEAALLSPEEVLEILRKGAAAGCTEALFTFGEKPEERYPEAREWLAEMGYDSTLE 84 (322)
T ss_pred eEEeccccCcCCCCccCCccccCCCcccccCCHHHHHHHHHHHHHCCCCEEEEecCCCccccHHHHHHHHHhcCCccHHH
Confidence 4688899999999999999976642 2589999999999999999999999988754443 01247
Q ss_pred HHHHHHHHHHhh---CCCCceeee-------eccccccccccchhhH-HHHHHhhcC---CCCCHHHHHHHHHHHHHhCC
Q 019890 194 HFAQTVRKLKEL---KPNMLIEAL-------VAKSGLNVFAHNIETV-EELQSAVRD---HRANFKQSLDVLMMAKDYVP 259 (334)
Q Consensus 194 ~fa~lIr~Ik~~---~P~i~vE~L-------l~~ag~dv~~HnlETv-~~l~~~Vr~---r~~tye~sL~vL~~ak~~~p 259 (334)
++.++++.|++. .|.+++..+ ++++|++ ++||+||+ +++++.|+. +..+|++++++++.+++.
T Consensus 85 ~~~~~~~~i~~e~~~~~~~~~g~lt~e~l~~Lk~aG~~-~~~~~Et~~~~l~~~~~~~~~p~k~~~~~l~~i~~a~~~-- 161 (322)
T TIGR03550 85 YLRELCELALEETGLLPHTNPGVMSRDELARLKPVNAS-MGLMLETTSERLCKGEAHYGSPGKDPAVRLETIEDAGRL-- 161 (322)
T ss_pred HHHHHHHHHHHhcCCccccCCCCCCHHHHHHHHhhCCC-CCcchhhhccccccccccCCCCCCCHHHHHHHHHHHHHc--
Confidence 889999999854 344444444 8899987 58999997 777776652 234689999999999996
Q ss_pred CcceEeeceEEecCCCHHHHHHHHHHHHHcC-----CcEEeeccCcCCCCCCCcc--cccCCHHHHHHHHHHHH
Q 019890 260 AGTLTKTSIMLGCGETPDQVVSTMEKVRAAG-----VDVMTFGQYMRPSKRHMPV--SEYITPEAFERYRALGM 326 (334)
Q Consensus 260 ~Gl~tkTgiMVGlGETdEE~~etl~~Lre~g-----vd~vtigqYlrP~~~h~~v--~~yv~P~~f~~~~~~a~ 326 (334)
|+.+++++|+|+|||+||+++++..|++++ |+.+.++.| +|.+. .|+ ...+++ .+.++.+|.
T Consensus 162 -Gi~~~s~~i~G~gEt~ed~~~~l~~lr~Lq~~~~g~~~~i~~~f-~P~~g-Tpl~~~~~~s~--~e~lr~iAv 230 (322)
T TIGR03550 162 -KIPFTTGILIGIGETREERAESLLAIRELHERYGHIQEVIVQNF-RAKPG-TPMENHPEPSL--EEMLRTVAV 230 (322)
T ss_pred -CCCccceeeEeCCCCHHHHHHHHHHHHHHHHHcCCCeEEecCcc-ccCCC-CCccCCCCCCH--HHHHHHHHH
Confidence 799999999999999999999999999999 777777777 55532 333 334555 455555553
No 18
>PRK14339 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.92 E-value=1.4e-23 Score=210.23 Aligned_cols=187 Identities=17% Similarity=0.243 Sum_probs=152.2
Q ss_pred ceEEEEeecCCCCCCCCCcccCCCCCC-CCCCchhHHHHHHHHHHCCCcEEEEeeecCCCCCC-----chHHHHHHHHHH
Q 019890 128 ATATIMILGDTCTRGCRFCNVKTSRAP-PPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLAD-----QGSGHFAQTVRK 201 (334)
Q Consensus 128 ~Tatfm~igdgCtr~C~FC~V~~~r~p-~~ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d-----~Ga~~fa~lIr~ 201 (334)
.+.+|+.+++||+++|+||++|..+++ .+.++++++++++.+.+.|+++|+|++.|-.+++. .+...|.++++.
T Consensus 126 ~~~a~i~isrGC~~~CsFC~ip~~rG~~~sr~~e~I~~Ei~~l~~~G~keI~l~~~~~~~yg~d~~~~~~~~~l~~Ll~~ 205 (420)
T PRK14339 126 PYKSLVNISIGCDKKCTYCIVPHTRGKEISIPMDLILKEAEKAVNNGAKEIFLLGQNVNNYGKRFSSEHEKVDFSDLLDK 205 (420)
T ss_pred CeEEEEEecCCCCCCCCcCCcccccCCCCCCCHHHHHHHHHHHHHCCCcEEEEeeeccccccCCCcCCcccccHHHHHHH
Confidence 378999999999999999999997764 46799999999999999999999999988433211 012358899988
Q ss_pred HHhhCCCC---c----------eeee--eccc--cccccccchhh-HHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCcce
Q 019890 202 LKELKPNM---L----------IEAL--VAKS--GLNVFAHNIET-VEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTL 263 (334)
Q Consensus 202 Ik~~~P~i---~----------vE~L--l~~a--g~dv~~HnlET-v~~l~~~Vr~r~~tye~sL~vL~~ak~~~p~Gl~ 263 (334)
|.+. +++ . -|++ ++++ +...+..-+|+ .+++++.|+ |+++.+++++.++.+++..|+ +.
T Consensus 206 l~~~-~g~~~ir~~s~~p~~~~~ell~~~~~~~~~~~~l~iglQSgsd~vLk~M~-R~~t~~~~~~~v~~lr~~~p~-i~ 282 (420)
T PRK14339 206 LSEI-EGLERIRFTSPHPLHMDDKFLEEFAKNPKICKSIHMPLQSGSSEILKAMK-RGYTKEWFLNRAEKLRALVPE-VS 282 (420)
T ss_pred HhcC-CCccEEEECCCChhhcCHHHHHHHHcCCCccCceEeCCccCCHHHHHhcc-CCCCHHHHHHHHHHHHHHCCC-CE
Confidence 8653 332 1 1222 4443 23344445787 599999999 899999999999999999887 99
Q ss_pred EeeceEEec-CCCHHHHHHHHHHHHHcCCcEEeeccCc-CCCCCCCcccccCCHHH
Q 019890 264 TKTSIMLGC-GETPDQVVSTMEKVRAAGVDVMTFGQYM-RPSKRHMPVSEYITPEA 317 (334)
Q Consensus 264 tkTgiMVGl-GETdEE~~etl~~Lre~gvd~vtigqYl-rP~~~h~~v~~yv~P~~ 317 (334)
+.+++|+|| |||++||.++++++++++++.+++|.|+ +|++....+...|+++.
T Consensus 283 i~~d~IvGfPgETeedf~~Tl~fl~~l~~~~~~~f~~sp~pGT~a~~~~~~v~~~~ 338 (420)
T PRK14339 283 ISTDIIVGFPGESDKDFEDTMDVLEKVRFEQIFSFKYSPRPLTEAAAWKNQVDEEV 338 (420)
T ss_pred EEEEEEEECCCCCHHHHHHHHHHHHhcCCCEEeeEecCCCCCCchhhCCCCCCHHH
Confidence 999999999 9999999999999999999999999997 88888777777888866
No 19
>PRK15108 biotin synthase; Provisional
Probab=99.92 E-value=1.1e-23 Score=206.34 Aligned_cols=187 Identities=15% Similarity=0.296 Sum_probs=146.7
Q ss_pred EEEEee-cCCCCCCCCCcccCCCCC---C--CCCCchhHHHHHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHH
Q 019890 130 ATIMIL-GDTCTRGCRFCNVKTSRA---P--PPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLK 203 (334)
Q Consensus 130 atfm~i-gdgCtr~C~FC~V~~~r~---p--~~ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik 203 (334)
.+.+.+ +++|+.+|.||++..... + ..++++|+.+.|+.+.+.|++++++.++.+ +.++...+++.++|+.||
T Consensus 43 ~~i~~~~Tn~C~~~C~yC~~~~~~~~~~~~~~~ls~eEI~~~a~~~~~~G~~~i~i~~~g~-~p~~~~~e~i~~~i~~ik 121 (345)
T PRK15108 43 STLLSIKTGACPEDCKYCPQSSRYKTGLEAERLMEVEQVLESARKAKAAGSTRFCMGAAWK-NPHERDMPYLEQMVQGVK 121 (345)
T ss_pred EEeEEEECCCcCCCCcCCCCcccCCCCCCcccCCCHHHHHHHHHHHHHcCCCEEEEEecCC-CCCcchHHHHHHHHHHHH
Confidence 445555 999999999999985321 1 237999999999999999999998865533 233445788999999998
Q ss_pred hhCCCCce---------eee--eccccccccccchhhHHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCcceEeeceEEec
Q 019890 204 ELKPNMLI---------EAL--VAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC 272 (334)
Q Consensus 204 ~~~P~i~v---------E~L--l~~ag~dv~~HnlETv~~l~~~Vr~r~~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGl 272 (334)
+.. +.+ |.+ |+++|+|.|+||+||.+.+|++++ ++++|+++|++++.+++. |+.++||+|+|+
T Consensus 122 ~~~--i~v~~s~G~ls~e~l~~LkeAGld~~n~~leT~p~~f~~I~-~~~~~~~rl~~i~~a~~~---G~~v~sg~i~Gl 195 (345)
T PRK15108 122 AMG--LETCMTLGTLSESQAQRLANAGLDYYNHNLDTSPEFYGNII-TTRTYQERLDTLEKVRDA---GIKVCSGGIVGL 195 (345)
T ss_pred hCC--CEEEEeCCcCCHHHHHHHHHcCCCEEeeccccChHhcCCCC-CCCCHHHHHHHHHHHHHc---CCceeeEEEEeC
Confidence 642 222 111 899999999999999999999999 589999999999999996 799999999999
Q ss_pred CCCHHHHHHHHHHHHHc--CCcEEeeccCcCCCCCC-CcccccCCHHHHHHHHHHHH
Q 019890 273 GETPDQVVSTMEKVRAA--GVDVMTFGQYMRPSKRH-MPVSEYITPEAFERYRALGM 326 (334)
Q Consensus 273 GETdEE~~etl~~Lre~--gvd~vtigqYlrP~~~h-~~v~~yv~P~~f~~~~~~a~ 326 (334)
|||++|+++++..|+++ +++.++++ ++.|.+.. +.-...++| .+.++.+|.
T Consensus 196 gEt~ed~v~~~~~l~~l~~~~~~ip~~-~~~P~~gTpl~~~~~~~~--~e~lr~iAi 249 (345)
T PRK15108 196 GETVKDRAGLLLQLANLPTPPESVPIN-MLVKVKGTPLADNDDVDA--FDFIRTIAV 249 (345)
T ss_pred CCCHHHHHHHHHHHHhccCCCCEEEeC-CccCCCCCCCCCCCCCCH--HHHHHHHHH
Confidence 99999999999999999 77899998 44454321 222234666 445555553
No 20
>PRK14336 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.91 E-value=3e-23 Score=207.76 Aligned_cols=197 Identities=17% Similarity=0.251 Sum_probs=154.3
Q ss_pred eEEEEeecCCCCCCCCCcccCCCCCC-CCCCchhHHHHHHHHHHCCCcEEEEeeecCCCCC-C-chHHHHHHHHHHHHhh
Q 019890 129 TATIMILGDTCTRGCRFCNVKTSRAP-PPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLA-D-QGSGHFAQTVRKLKEL 205 (334)
Q Consensus 129 Tatfm~igdgCtr~C~FC~V~~~r~p-~~ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~-d-~Ga~~fa~lIr~Ik~~ 205 (334)
+.+|+++++||+++|+||++|..+++ .+.+++++.++++.+.+.|+++|+|+++|-..+. | .+...|.+++++|++.
T Consensus 124 ~~a~i~i~rGC~~~CsFC~ip~~rG~~rsrs~e~Iv~Ei~~l~~~G~~ei~l~~~~~~~yg~d~~~~~~l~~Ll~~l~~~ 203 (418)
T PRK14336 124 VSANVTIMQGCDNFCTYCVVPYRRGREKSRSIAEIGCEVAELVRRGSREVVLLGQNVDSYGHDLPEKPCLADLLSALHDI 203 (418)
T ss_pred eEEEEEeccCCCCCCccCCccccCCCCccCCHHHHHHHHHHHHHCCCeEEEEEecCccccccCCCCcccHHHHHHHHHhc
Confidence 88999999999999999999987764 4689999999999999999999999998843221 1 1124589999999764
Q ss_pred CCCC-ceeee--------------eccc--cccccccchhh-HHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCcceEeec
Q 019890 206 KPNM-LIEAL--------------VAKS--GLNVFAHNIET-VEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTS 267 (334)
Q Consensus 206 ~P~i-~vE~L--------------l~~a--g~dv~~HnlET-v~~l~~~Vr~r~~tye~sL~vL~~ak~~~p~Gl~tkTg 267 (334)
++. .+... +.+. +...+...+|+ .+++++.|+ |+++.++.++.++.+++.+|+ +.+.++
T Consensus 204 -~~~~~ir~~~~~p~~i~~ell~~l~~~~~~~~~l~lglQSgsd~vLk~M~-R~~~~~~~~~~i~~lr~~~pg-i~i~~d 280 (418)
T PRK14336 204 -PGLLRIRFLTSHPKDISQKLIDAMAHLPKVCRSLSLPVQAGDDTILAAMR-RGYTNQQYRELVERLKTAMPD-ISLQTD 280 (418)
T ss_pred -CCccEEEEeccChhhcCHHHHHHHHhcCccCCceecCCCcCCHHHHHHhC-CCCCHHHHHHHHHHHHhhCCC-CEEEEE
Confidence 432 23221 3332 23334444786 599999999 899999999999999999887 999999
Q ss_pred eEEec-CCCHHHHHHHHHHHHHcCCcEEeeccCc-CCCCCCC-cccccCCHHHH----HHHHHHHHHh
Q 019890 268 IMLGC-GETPDQVVSTMEKVRAAGVDVMTFGQYM-RPSKRHM-PVSEYITPEAF----ERYRALGMEM 328 (334)
Q Consensus 268 iMVGl-GETdEE~~etl~~Lre~gvd~vtigqYl-rP~~~h~-~v~~yv~P~~f----~~~~~~a~~~ 328 (334)
+|+|| |||+|+|.++++++++++++.+++|.|. +|++... .+...|++++- +.|.+++.++
T Consensus 281 ~IvGfPGET~edf~~tl~fi~~~~~~~~~v~~ysp~pGT~a~~~~~~~v~~~~k~~R~~~l~~~~~~~ 348 (418)
T PRK14336 281 LIVGFPSETEEQFNQSYKLMADIGYDAIHVAAYSPRPQTVAARDMADDVPVIEKKRRLKLIEDLQKET 348 (418)
T ss_pred EEEECCCCCHHHHHHHHHHHHhcCCCEEEeeecCCCCCChhHhhCccCCCHHHHHHHHHHHHHHHHHH
Confidence 99999 9999999999999999999999999997 7776655 35567877653 3344444443
No 21
>PRK14337 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.91 E-value=5.6e-23 Score=207.22 Aligned_cols=198 Identities=18% Similarity=0.303 Sum_probs=157.8
Q ss_pred ceEEEEeecCCCCCCCCCcccCCCCCC-CCCCchhHHHHHHHHHHCCCcEEEEeeecCCCCC-C--chHHHHHHHHHHHH
Q 019890 128 ATATIMILGDTCTRGCRFCNVKTSRAP-PPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLA-D--QGSGHFAQTVRKLK 203 (334)
Q Consensus 128 ~Tatfm~igdgCtr~C~FC~V~~~r~p-~~ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~-d--~Ga~~fa~lIr~Ik 203 (334)
.+.+|+.+++||+++|+||++|..+++ .+.++++++++++.+.+.|+++|+|++++-..+. | .+...|.+++++|.
T Consensus 147 ~~~a~v~i~rGC~~~CsFC~ip~~rG~~rsr~~e~Iv~Ei~~l~~~G~~eI~l~~~~~~~yg~d~~~~~~~l~~Ll~~l~ 226 (446)
T PRK14337 147 PASAFVNIMQGCDNFCAYCIVPYTRGRQKSRSSAAVLDECRALVDRGAREITLLGQNVNSYGQDKHGDGTSFAQLLHKVA 226 (446)
T ss_pred CcEEEEEeccCCCCCCcCCCcccCCCCCeeCCHHHHHHHHHHHHHCCCeEEEEEecCccccccCCCCCCccHHHHHHHHH
Confidence 478999999999999999999987754 4688999999999999999999999998743221 1 11135888999887
Q ss_pred hhCCCC-ceee------------e--ecc--ccccccccchhh-HHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCcceEe
Q 019890 204 ELKPNM-LIEA------------L--VAK--SGLNVFAHNIET-VEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTK 265 (334)
Q Consensus 204 ~~~P~i-~vE~------------L--l~~--ag~dv~~HnlET-v~~l~~~Vr~r~~tye~sL~vL~~ak~~~p~Gl~tk 265 (334)
+. +++ .+.+ + +++ .+...+..-+|+ ++++++.|+ |+++.++.++.++.+++..|+ +.+.
T Consensus 227 ~~-~g~~~ir~~~~~p~~i~~ell~~l~~~~~~~~~l~iglQSgsd~vLk~M~-R~~t~e~~~~~v~~lr~~~~~-i~i~ 303 (446)
T PRK14337 227 AL-PGLERLRFTTPHPKDIAPEVIEAFGELPNLCPRLHLPLQSGSDRILKAMG-RKYDMARYLDIVTDLRAARPD-IALT 303 (446)
T ss_pred hc-CCCcEEEEccCCcccCCHHHHHHHHhCCcccCeEEECCCCCCHHHHHhCC-CCCCHHHHHHHHHHHHHhCCC-CeEE
Confidence 64 332 1222 1 333 233445555887 589999999 899999999999999999887 9999
Q ss_pred eceEEec-CCCHHHHHHHHHHHHHcCCcEEeeccCc-CCCCCCCcccccCCHHHH----HHHHHHHHHh
Q 019890 266 TSIMLGC-GETPDQVVSTMEKVRAAGVDVMTFGQYM-RPSKRHMPVSEYITPEAF----ERYRALGMEM 328 (334)
Q Consensus 266 TgiMVGl-GETdEE~~etl~~Lre~gvd~vtigqYl-rP~~~h~~v~~yv~P~~f----~~~~~~a~~~ 328 (334)
+++|+|| |||+|||.++++++++++++.+++|.|+ +|++....+...|+++.- .++.+++.++
T Consensus 304 ~d~IvG~PgET~ed~~~tl~~l~~~~~~~~~~f~ysp~pgT~a~~~~~~v~~~vk~~R~~~l~~~~~~~ 372 (446)
T PRK14337 304 TDLIVGFPGETEEDFEQTLEAMRTVGFASSFSFCYSDRPGTRAEMLPGKVPEEVKSARLARLQELQNEL 372 (446)
T ss_pred EeEEEECCCCCHHHHHHHHHHHHhcCCCeeEEEecCCCCCCccccCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 9999999 9999999999999999999999999997 899888887778888663 3444444443
No 22
>PRK14329 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.91 E-value=5.6e-23 Score=208.48 Aligned_cols=199 Identities=20% Similarity=0.289 Sum_probs=158.4
Q ss_pred ceEEEEeecCCCCCCCCCcccCCCCCC-CCCCchhHHHHHHHHHHCCCcEEEEeeecCCCCC-C-ch-----HHHHHHHH
Q 019890 128 ATATIMILGDTCTRGCRFCNVKTSRAP-PPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLA-D-QG-----SGHFAQTV 199 (334)
Q Consensus 128 ~Tatfm~igdgCtr~C~FC~V~~~r~p-~~ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~-d-~G-----a~~fa~lI 199 (334)
.+.+|+.+++||+.+|+||++|..+++ .+.+++++.++++.+.+.|+++|+|++++-+++. | ++ ...|++++
T Consensus 167 ~~~a~i~isrGCp~~CsFC~ip~~~G~~rsrs~e~Vv~Ei~~l~~~g~~eI~l~~~~~~~y~~d~~~~~~~~~~~l~~Ll 246 (467)
T PRK14329 167 GVSAFVSIMRGCDNMCTFCVVPFTRGRERSRDPESILNEVRDLFAKGYKEVTLLGQNVDSYLWYGGGLKKDEAVNFAQLL 246 (467)
T ss_pred CcEEEEEeccCcccCCCCCccccccCCcccCCHHHHHHHHHHHHHCCCeEEEEEeecccccccccCCccccccccHHHHH
Confidence 378899999999999999999987754 4689999999999999999999999999865442 1 11 23689999
Q ss_pred HHHHhhCCCCcee------------ee--eccc--cccccccchhh-HHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCcc
Q 019890 200 RKLKELKPNMLIE------------AL--VAKS--GLNVFAHNIET-VEELQSAVRDHRANFKQSLDVLMMAKDYVPAGT 262 (334)
Q Consensus 200 r~Ik~~~P~i~vE------------~L--l~~a--g~dv~~HnlET-v~~l~~~Vr~r~~tye~sL~vL~~ak~~~p~Gl 262 (334)
++|.+..++..+. ++ ++++ |...+...+|+ .+++++.|+ |+++.++.++.++++++..|+ +
T Consensus 247 ~~l~~~~~~~~ir~~~~~p~~l~~ell~~m~~~~~g~~~i~iglQSgsd~vLk~m~-R~~t~~~~~~~i~~ir~~~~~-~ 324 (467)
T PRK14329 247 EMVAEAVPDMRIRFSTSHPKDMTDDVLEVMAKYDNICKHIHLPVQSGSDRILKLMN-RKYTREWYLDRIDAIRRIIPD-C 324 (467)
T ss_pred HHHHhcCCCcEEEEecCCcccCCHHHHHHHHhCCCCCCeEEeCCCcCCHHHHHhcC-CCCCHHHHHHHHHHHHHhCCC-C
Confidence 9987654433222 12 4444 45556666897 589999999 899999999999999999886 8
Q ss_pred eEeeceEEec-CCCHHHHHHHHHHHHHcCCcEEeeccCc-CCCCCCCc-ccccCCHHHH----HHHHHHHHHh
Q 019890 263 LTKTSIMLGC-GETPDQVVSTMEKVRAAGVDVMTFGQYM-RPSKRHMP-VSEYITPEAF----ERYRALGMEM 328 (334)
Q Consensus 263 ~tkTgiMVGl-GETdEE~~etl~~Lre~gvd~vtigqYl-rP~~~h~~-v~~yv~P~~f----~~~~~~a~~~ 328 (334)
.+.++||+|| |||+|||.++++++++++++.+++|.|. +|+..... +.+.|+++.- .++.+++.++
T Consensus 325 ~i~~d~IvGfPgET~edf~~tl~~i~~l~~~~~~v~~~sp~pGT~~~~~~~~~v~~~~~~~R~~~l~~~~~~~ 397 (467)
T PRK14329 325 GISTDMIAGFPTETEEDHQDTLSLMEEVGYDFAFMFKYSERPGTYAARKLEDDVPEEVKKRRLNEIIALQQEL 397 (467)
T ss_pred EEEEeEEEeCCCCCHHHHHHHHHHHHhhCCCeEeeeEecCCCCChhhhhCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 8999999999 9999999999999999999999999998 78776553 5566777653 4444555443
No 23
>PRK14335 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.90 E-value=7.8e-23 Score=206.71 Aligned_cols=199 Identities=17% Similarity=0.251 Sum_probs=158.0
Q ss_pred ceEEEEeecCCCCCCCCCcccCCCCCC-CCCCchhHHHHHHHHHHCCCcEEEEeeecCCCCC--C--chHHHHHHHHHHH
Q 019890 128 ATATIMILGDTCTRGCRFCNVKTSRAP-PPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLA--D--QGSGHFAQTVRKL 202 (334)
Q Consensus 128 ~Tatfm~igdgCtr~C~FC~V~~~r~p-~~ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~--d--~Ga~~fa~lIr~I 202 (334)
.+.+|+.+++||+.+|+||++|..+++ .+.+++++.++++.+.+.|+++|+|+|+|-..+. | +....|.+++++|
T Consensus 151 ~~~~~i~I~rGC~~~CsfC~~p~~rG~~rsr~~e~Vv~Ei~~l~~~G~~ei~l~g~~~~~y~~~~~~~~~~~~~~Ll~~l 230 (455)
T PRK14335 151 SFQSFIPIMNGCNNFCSYCIVPYVRGREISRDLDAILQEIDVLSEKGVREITLLGQNVNSYRGRDREGNIVTFPQLLRHI 230 (455)
T ss_pred CceEEEEhhcCCCCCCCCCCcccCCCCCccCCHHHHHHHHHHHHHCCCeEEEEEeecccccccccccCCccCHHHHHHHH
Confidence 478999999999999999999987754 4678999999999999999999999998753321 1 1113588899888
Q ss_pred Hhh---CCCC-------------ceeee--ecc--ccccccccchhh-HHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCc
Q 019890 203 KEL---KPNM-------------LIEAL--VAK--SGLNVFAHNIET-VEELQSAVRDHRANFKQSLDVLMMAKDYVPAG 261 (334)
Q Consensus 203 k~~---~P~i-------------~vE~L--l~~--ag~dv~~HnlET-v~~l~~~Vr~r~~tye~sL~vL~~ak~~~p~G 261 (334)
.+. .+++ +-|++ +++ +|...+...+|+ .+++.+.|+ |+++.+++++.++.+++..|+
T Consensus 231 ~~~~~~~~~i~~ir~~s~~p~~i~~ell~~m~~~~~gc~~l~iglQSgsd~vLk~m~-R~~t~e~~~~~v~~ir~~~pg- 308 (455)
T PRK14335 231 VRRAEVTDQIRWIRFMSSHPKDLSDDLIATIAQESRLCRLVHLPVQHGSNGVLKRMN-RSYTREHYLSLVGKLKASIPN- 308 (455)
T ss_pred HHhhcccCCceEEEEeecCcccCCHHHHHHHHhCCCCCCeEEEccCcCCHHHHHHcC-CCCCHHHHHHHHHHHHHhCCC-
Confidence 521 1221 11222 444 355666666887 599999999 899999999999999999886
Q ss_pred ceEeeceEEec-CCCHHHHHHHHHHHHHcCCcEEeeccCc-CCCCCCCcccccCCHHHH----HHHHHHHHHh
Q 019890 262 TLTKTSIMLGC-GETPDQVVSTMEKVRAAGVDVMTFGQYM-RPSKRHMPVSEYITPEAF----ERYRALGMEM 328 (334)
Q Consensus 262 l~tkTgiMVGl-GETdEE~~etl~~Lre~gvd~vtigqYl-rP~~~h~~v~~yv~P~~f----~~~~~~a~~~ 328 (334)
+.+.++||+|| |||+|+|.++++++++++++.+++|.|+ +|++........|+++.- .++.+++.++
T Consensus 309 i~i~~d~IvGfPgET~edf~~Tl~~i~~l~~~~~~~~~~sp~pGT~~~~~~~~v~~~~k~~R~~~l~~~~~~~ 381 (455)
T PRK14335 309 VALSTDILIGFPGETEEDFEQTLDLMREVEFDSAFMYHYNPREGTPAYDFPDRIPDEVKIARLQRVIALQMSI 381 (455)
T ss_pred CEEEEEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEEecCCCCCchhhCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999 9999999999999999999999999997 898887777777888663 4444555443
No 24
>PRK09240 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=99.90 E-value=7.4e-23 Score=202.13 Aligned_cols=188 Identities=16% Similarity=0.229 Sum_probs=155.7
Q ss_pred EeecCCCCCCCCCcccCCCCC--CCCCCchhHHHHHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhCCCCc
Q 019890 133 MILGDTCTRGCRFCNVKTSRA--PPPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNML 210 (334)
Q Consensus 133 m~igdgCtr~C~FC~V~~~r~--p~~ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~P~i~ 210 (334)
+.++|.|+++|.||+++...+ ...++++|+.+.|+.+.+.|+++|.|+|+.. ..+.+.+++.+++++|++..|++.
T Consensus 78 in~Tn~C~~~C~YC~f~~~~~~~~~~ls~eEI~~~a~~~~~~Gv~~i~lvgGe~--p~~~~~e~l~~~i~~Ik~~~p~i~ 155 (371)
T PRK09240 78 LYLSNYCANDCTYCGFSMSNKIKRKTLDEEEIEREMAAIKKLGFEHILLLTGEH--EAKVGVDYIRRALPIAREYFSSVS 155 (371)
T ss_pred eEEcccccCcCCcCCCCCCCCCccccCCHHHHHHHHHHHHhCCCCEEEEeeCCC--CCCCCHHHHHHHHHHHHHhCCCce
Confidence 556999999999999976432 2358999999999999999999999998653 333567899999999998888877
Q ss_pred eeee---------eccccccccccchhhH-HHHHHhhcC--CCCCHHHHHHHHHHHHHhCCCcce-EeeceEEecCCCHH
Q 019890 211 IEAL---------VAKSGLNVFAHNIETV-EELQSAVRD--HRANFKQSLDVLMMAKDYVPAGTL-TKTSIMLGCGETPD 277 (334)
Q Consensus 211 vE~L---------l~~ag~dv~~HnlETv-~~l~~~Vr~--r~~tye~sL~vL~~ak~~~p~Gl~-tkTgiMVGlGETdE 277 (334)
+++. |+++|++.|+||+||. +++|+.|++ ++++|+++++.++.+++. |+. +++|+|+|+||+++
T Consensus 156 i~~g~lt~e~l~~Lk~aGv~r~~i~lET~~~~~~~~i~~~g~~h~~~~rl~~i~~a~~a---G~~~v~~g~i~Glge~~~ 232 (371)
T PRK09240 156 IEVQPLSEEEYAELVELGLDGVTVYQETYNPATYAKHHLRGPKRDFEYRLETPERAGRA---GIRKIGLGALLGLSDWRT 232 (371)
T ss_pred eccCCCCHHHHHHHHHcCCCEEEEEEecCCHHHHHHhCcCCCCCCHHHHHHHHHHHHHc---CCCeeceEEEecCCccHH
Confidence 7764 8999999999999995 999999972 478999999999999996 786 99999999999999
Q ss_pred HHHHHHHHHHHcCCc------EEeeccCcCCCCCCCcccccCCHHHHHHHHHHHH
Q 019890 278 QVVSTMEKVRAAGVD------VMTFGQYMRPSKRHMPVSEYITPEAFERYRALGM 326 (334)
Q Consensus 278 E~~etl~~Lre~gvd------~vtigqYlrP~~~h~~v~~yv~P~~f~~~~~~a~ 326 (334)
|+.+++..|+++++. .|.| +.++|.+.-+.-...++|+++.+.=.+++
T Consensus 233 d~~~~a~~l~~L~~~~~~~~~sv~~-~~l~P~~g~~~~~~~~~~~e~l~~ia~~R 286 (371)
T PRK09240 233 DALMTALHLRYLQRKYWQAEYSISF-PRLRPCTGGIEPASIVSDKQLVQLICAFR 286 (371)
T ss_pred HHHHHHHHHHHHHHhCCCCceeeec-CccccCCCCCCCCCCCCHHHHHHHHHHHH
Confidence 999999999999985 5666 47778765444445578877665544443
No 25
>PRK08445 hypothetical protein; Provisional
Probab=99.90 E-value=6.4e-23 Score=201.19 Aligned_cols=221 Identities=14% Similarity=0.218 Sum_probs=164.3
Q ss_pred HHHHHHHhhcCchhhhhccCCCCCcccccCCCCCcceEEE-----EeecCCCCCCCCCcccCCCCC-C--CCCCchhHHH
Q 019890 93 VQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATI-----MILGDTCTRGCRFCNVKTSRA-P--PPPDPDEPTN 164 (334)
Q Consensus 93 ~~~~~~l~~~~L~Tvceea~cpni~ec~~~~~~~~~Tatf-----m~igdgCtr~C~FC~V~~~r~-p--~~ld~~Ep~~ 164 (334)
.+.-.++....|..+++-|.=-.. +.+++. ..+| +..+++|.++|+||++....+ + ..++++|+.+
T Consensus 7 ~e~l~Ll~~~~l~~L~~~A~~vr~-~~~g~~-----v~~~~~~~~in~Tn~C~~~C~FCa~~~~~~~~~~y~l~~eeI~~ 80 (348)
T PRK08445 7 EEALDLIKNAPLKELGEMALERKQ-ELHPEK-----ITTFIVDRNINYTNICWVDCKFCAFYRHLKEDDAYILSFEEIDK 80 (348)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHH-HHcCCc-----EEEEecccccccccccccCCccCCCccCCCCCCCeeCCHHHHHH
Confidence 344444554555555555521111 233443 4554 447999999999999986432 2 3469999999
Q ss_pred HHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhCCCCceee--------------------e--eccccccc
Q 019890 165 VAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEA--------------------L--VAKSGLNV 222 (334)
Q Consensus 165 ~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~P~i~vE~--------------------L--l~~ag~dv 222 (334)
.++.+++.|.++|+++|++ .++...+++.++++.|++..|++.+.. + |+++|++.
T Consensus 81 ~~~~a~~~g~~~i~~~gg~---~~~~~~e~~~~l~~~Ik~~~p~i~~~a~s~~ei~~~a~~~~~~~~e~L~~LkeAGl~~ 157 (348)
T PRK08445 81 KIEELLAIGGTQILFQGGV---HPKLKIEWYENLVSHIAQKYPTITIHGFSAVEIDYIAKISKISIKEVLERLQAKGLSS 157 (348)
T ss_pred HHHHHHHcCCCEEEEecCC---CCCCCHHHHHHHHHHHHHHCCCcEEEEccHHHHHHHHHHhCCCHHHHHHHHHHcCCCC
Confidence 9999999999999998865 355667899999999999999765432 2 89999999
Q ss_pred cccc-hhhH-HHHHHhhcCCCCCHHHHHHHHHHHHHhCCCcceEeeceEEecCCCHHHHHHHHHHHHHcCCcEEeeccC-
Q 019890 223 FAHN-IETV-EELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQY- 299 (334)
Q Consensus 223 ~~Hn-lETv-~~l~~~Vr~r~~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGlGETdEE~~etl~~Lre~gvd~vtigqY- 299 (334)
|+|+ +|+. +++.+.+++.+.+.++++++++.+++. |+.+++++|+|+|||.||+++++..|++++.+..++..+
T Consensus 158 ~~g~glE~~~d~v~~~~~pk~~t~~~~i~~i~~a~~~---Gi~~~sg~i~G~~Et~edr~~~l~~lreLq~~~~g~~~fi 234 (348)
T PRK08445 158 IPGAGAEILSDRVRDIIAPKKLDSDRWLEVHRQAHLI---GMKSTATMMFGTVENDEEIIEHWERIRDLQDETGGFRAFI 234 (348)
T ss_pred CCCCceeeCCHHHHHhhCCCCCCHHHHHHHHHHHHHc---CCeeeeEEEecCCCCHHHHHHHHHHHHHHHHHhCCeeEEe
Confidence 9985 9975 889999975688999999999999997 899999999999999999999999999999987555443
Q ss_pred ---cCCCCCCCc----ccccCCHHHHHHHHHHHHH
Q 019890 300 ---MRPSKRHMP----VSEYITPEAFERYRALGME 327 (334)
Q Consensus 300 ---lrP~~~h~~----v~~yv~P~~f~~~~~~a~~ 327 (334)
++|...-+. +.+..+| .+.++.+|..
T Consensus 235 ~~~~~p~~tpl~~~~~~~~~~~~--~e~Lr~iAv~ 267 (348)
T PRK08445 235 LWSFQPDNTPLKEEIPEIKKQSS--NRYLRLLAVS 267 (348)
T ss_pred ccccCCCCCcccccCCCCCCCCH--HHHHHHHHHH
Confidence 355221121 2334666 4556666643
No 26
>PLN02389 biotin synthase
Probab=99.90 E-value=7.6e-23 Score=202.84 Aligned_cols=189 Identities=15% Similarity=0.308 Sum_probs=144.7
Q ss_pred EEEEee-cCCCCCCCCCcccCCCC--C-C--CCCCchhHHHHHHHHHHCCCcEEEEeeecCCCC-CCchHHHHHHHHHHH
Q 019890 130 ATIMIL-GDTCTRGCRFCNVKTSR--A-P--PPPDPDEPTNVAEAIASWGLDYVVITSVDRDDL-ADQGSGHFAQTVRKL 202 (334)
Q Consensus 130 atfm~i-gdgCtr~C~FC~V~~~r--~-p--~~ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl-~d~Ga~~fa~lIr~I 202 (334)
.+.+.+ +++|+.+|+||++.... + + ..++++|+.+.|+.+.+.|+++++|.+..++.. ++...+++.++|+.|
T Consensus 83 ~~i~n~~T~~C~~~C~fCaqs~~~~~~~~~~~~Ls~EeIl~~a~~~~~~G~~~~~ivts~rg~~~e~~~~e~i~eiir~i 162 (379)
T PLN02389 83 CTLLSIKTGGCSEDCSYCPQSSRYDTGVKAQKLMSKDDVLEAAKRAKEAGSTRFCMGAAWRDTVGRKTNFNQILEYVKEI 162 (379)
T ss_pred EEEEEeccCCcCcCCCCCCCcccCCCCCcccccCCHHHHHHHHHHHHHcCCCEEEEEecccCCCCChhHHHHHHHHHHHH
Confidence 444555 79999999999997532 1 1 248999999999999999999998864433222 223467889999999
Q ss_pred HhhCCCCc-------eeee--eccccccccccchhhHHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCcceEeeceEEecC
Q 019890 203 KELKPNML-------IEAL--VAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCG 273 (334)
Q Consensus 203 k~~~P~i~-------vE~L--l~~ag~dv~~HnlETv~~l~~~Vr~r~~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGlG 273 (334)
|+..+.+. .|.+ |+++|+|.|+||+||++++|++++ .+++|++++++++.+++. |+.+++++|+|||
T Consensus 163 k~~~l~i~~s~G~l~~E~l~~LkeAGld~~~~~LeTs~~~y~~i~-~~~s~e~rl~ti~~a~~~---Gi~v~sg~IiGlg 238 (379)
T PLN02389 163 RGMGMEVCCTLGMLEKEQAAQLKEAGLTAYNHNLDTSREYYPNVI-TTRSYDDRLETLEAVREA---GISVCSGGIIGLG 238 (379)
T ss_pred hcCCcEEEECCCCCCHHHHHHHHHcCCCEEEeeecCChHHhCCcC-CCCCHHHHHHHHHHHHHc---CCeEeEEEEECCC
Confidence 86433211 1112 899999999999999999999999 588999999999999997 8999999999999
Q ss_pred CCHHHHHHHHHHHHHc--CCcEEeeccCcCCCCCCCccc--ccCCHHHHHHHHHHHH
Q 019890 274 ETPDQVVSTMEKVRAA--GVDVMTFGQYMRPSKRHMPVS--EYITPEAFERYRALGM 326 (334)
Q Consensus 274 ETdEE~~etl~~Lre~--gvd~vtigqYlrP~~~h~~v~--~yv~P~~f~~~~~~a~ 326 (334)
||++|+++++..|+++ +++.+.++. +.|.+. .|+. ...+| .+.++.+|.
T Consensus 239 Et~edrv~~l~~Lr~L~~~~~~v~l~~-l~P~~G-TpL~~~~~~s~--~e~lr~iAi 291 (379)
T PLN02389 239 EAEEDRVGLLHTLATLPEHPESVPINA-LVAVKG-TPLEDQKPVEI--WEMVRMIAT 291 (379)
T ss_pred CCHHHHHHHHHHHHhcccCCcEEeccc-ceecCC-CcCCCCCCCCH--HHHHHHHHH
Confidence 9999999999999999 689999975 445443 2332 34555 444554443
No 27
>PRK05926 hypothetical protein; Provisional
Probab=99.90 E-value=1.2e-22 Score=200.89 Aligned_cols=184 Identities=17% Similarity=0.255 Sum_probs=150.5
Q ss_pred ecCCCCCCCCCcccCCCCC-C--CCCCchhHHHHHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhCCCCce
Q 019890 135 LGDTCTRGCRFCNVKTSRA-P--PPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLI 211 (334)
Q Consensus 135 igdgCtr~C~FC~V~~~r~-p--~~ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~P~i~v 211 (334)
.+|.|.++|+||++....+ + ..++++|+.+.|+.. +.|+++++|+|+.. |+...+++.++++.|++..|++.+
T Consensus 74 ~Tn~C~~dC~FCaf~~~~~~~~~~~ls~eeI~~~a~~a-~~G~~ei~iv~G~~---p~~~~e~~~e~i~~Ik~~~p~i~i 149 (370)
T PRK05926 74 PTNFCQFNCTFCSFYAKPGDPKGWFYTPDQLVQSIKEN-PSPITETHIVAGCF---PSCNLAYYEELFSKIKQNFPDLHI 149 (370)
T ss_pred cCCCCCCCCCccccccCCCCcccccCCHHHHHHHHHHH-hcCCCEEEEEeCcC---CCCCHHHHHHHHHHHHHhCCCeeE
Confidence 4999999999999876432 1 347999999999988 69999999998764 455678899999999999898765
Q ss_pred eee----------------------eccccccccccc-hhhH-HHHHHhhcCCCCCHHHHHHHHHHHHHhCCCcceEeec
Q 019890 212 EAL----------------------VAKSGLNVFAHN-IETV-EELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTS 267 (334)
Q Consensus 212 E~L----------------------l~~ag~dv~~Hn-lETv-~~l~~~Vr~r~~tye~sL~vL~~ak~~~p~Gl~tkTg 267 (334)
..+ ++++|++.|+|| .|+. +++++.++|.+.++++++++++.+|+. |+.++++
T Consensus 150 ~a~s~~Ei~~~~~~~~~~~~e~l~~LkeAGl~~~~g~GaEi~~e~~r~~~~p~~~t~~e~l~~i~~a~~~---Gi~~~sg 226 (370)
T PRK05926 150 KALTAIEYAYLSKLDNLPVKEVLQTLKIAGLDSIPGGGAEILVDEIRETLAPGRLSSQGFLEIHKTAHSL---GIPSNAT 226 (370)
T ss_pred EECCHHHHHHHHhhcCCCHHHHHHHHHHcCcCccCCCCchhcCHHHHHhhCCCCCCHHHHHHHHHHHHHc---CCcccCc
Confidence 422 899999999998 8875 777777875567899999999999997 8999999
Q ss_pred eEEecCCCHHHHHHHHHHHHHcCCcEEeeccCc----CCCCCCCc----ccccCCHHHHHHHHHHHHH
Q 019890 268 IMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYM----RPSKRHMP----VSEYITPEAFERYRALGME 327 (334)
Q Consensus 268 iMVGlGETdEE~~etl~~Lre~gvd~vtigqYl----rP~~~h~~----v~~yv~P~~f~~~~~~a~~ 327 (334)
+|+|+|||.||+++++..||+++++.++|..|+ +|....+. .....++ .+.++.+|..
T Consensus 227 mi~G~gEt~edrv~~l~~Lr~Lq~~t~gf~~fIp~~f~~~~t~l~~~~~~~~~~~~--~~~lr~~Ava 292 (370)
T PRK05926 227 MLCYHRETPEDIVTHMSKLRALQDKTSGFKNFILLKFASENNALGKRLRKMGSRHS--IPPASIIAVA 292 (370)
T ss_pred eEEeCCCCHHHHHHHHHHHHhcCCccCCeeeeEecccCCCCCcccccccccCCCCh--HHHHHHHHHH
Confidence 999999999999999999999999999999996 36544332 1224555 4567777653
No 28
>TIGR00423 radical SAM domain protein, CofH subfamily. This protein family includes the CofH protein of coenzyme F(420) biosynthesis from Methanocaldococcus jannaschii, but appears to hit genomes more broadly than just the subset that make coenzyme F(420), so that narrower group is being built as a separate family.
Probab=99.90 E-value=8.6e-23 Score=196.49 Aligned_cols=189 Identities=15% Similarity=0.283 Sum_probs=148.2
Q ss_pred EEEeecCCCCCCCCCcccCCCCC---CCCCCchhHHHHHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhCC
Q 019890 131 TIMILGDTCTRGCRFCNVKTSRA---PPPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKP 207 (334)
Q Consensus 131 tfm~igdgCtr~C~FC~V~~~r~---p~~ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~P 207 (334)
.++..+++|+++|+||+++...+ ...+++||+.+.++.+.+.|+++|+|+|++. ++...+++.++++.|++..|
T Consensus 7 ~~i~~T~~C~~~C~FC~~~~~~~~~~~~~ls~eeI~~~~~~~~~~G~~~i~l~gg~~---~~~~~~~~~~i~~~Ik~~~~ 83 (309)
T TIGR00423 7 RNINFTNICVGKCKFCAFRAREKDKDAYVLSLEEILEKVKEAVAKGATEVCIQGGLN---PQLDIEYYEELFRAIKQEFP 83 (309)
T ss_pred eeecCccccccCCccCCCccCCCCCCcccCCHHHHHHHHHHHHHCCCCEEEEecCCC---CCCCHHHHHHHHHHHHHHCC
Confidence 35668999999999999986432 2358999999999999999999999998753 44456789999999999888
Q ss_pred CCcee--------------------ee--ecccccccccc-chhhH-HHHHHhhcCCCCCHHHHHHHHHHHHHhCCCcce
Q 019890 208 NMLIE--------------------AL--VAKSGLNVFAH-NIETV-EELQSAVRDHRANFKQSLDVLMMAKDYVPAGTL 263 (334)
Q Consensus 208 ~i~vE--------------------~L--l~~ag~dv~~H-nlETv-~~l~~~Vr~r~~tye~sL~vL~~ak~~~p~Gl~ 263 (334)
++.+. .+ |+++|++.++| +.|+. +++++.+.+.+.++++++++++.+++. |+.
T Consensus 84 ~i~~~~~s~~e~~~~~~~~g~~~~e~l~~LkeAGl~~i~~~g~E~l~~~~~~~i~~~~~t~~~~l~~i~~a~~~---Gi~ 160 (309)
T TIGR00423 84 DVHIHAFSPMEVYFLAKNEGLSIEEVLKRLKKAGLDSMPGTGAEILDDSVRRKICPNKLSSDEWLEVIKTAHRL---GIP 160 (309)
T ss_pred CceEEecCHHHHHHHHHHcCCCHHHHHHHHHHcCCCcCCCCcchhcCHHHHHhhCCCCCCHHHHHHHHHHHHHc---CCC
Confidence 65543 12 89999999986 78986 889999975567999999999999997 799
Q ss_pred EeeceEEecCCCHHHHHHHHHHHHHcCCcEEeeccC-----cCCCCCCCccc--ccCCHHHHHHHHHHHHH
Q 019890 264 TKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQY-----MRPSKRHMPVS--EYITPEAFERYRALGME 327 (334)
Q Consensus 264 tkTgiMVGlGETdEE~~etl~~Lre~gvd~vtigqY-----lrP~~~h~~v~--~yv~P~~f~~~~~~a~~ 327 (334)
+++++|+|+|||+||+++++..|++++.+..++..+ +.+....+.-. ...++ .+.++.+|..
T Consensus 161 ~~s~~iiG~~Et~ed~~~~l~~lr~l~~~~~~f~~fiP~~f~~~~t~~l~~~~~~~~~~--~e~lr~iA~~ 229 (309)
T TIGR00423 161 TTATMMFGHVENPEHRVEHLLRIRKIQEKTGGFTEFIPLPFQPENNPYLEGEVRKGASG--IDDLKVIAIS 229 (309)
T ss_pred ceeeEEecCCCCHHHHHHHHHHHHhhchhhCCeeeEEeeeecCCCChhhccCCCCCCCH--HHHHHHHHHH
Confidence 999999999999999999999999999986555433 33222112211 23444 6666666654
No 29
>PRK14330 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.90 E-value=2.5e-22 Score=201.62 Aligned_cols=197 Identities=16% Similarity=0.258 Sum_probs=153.8
Q ss_pred eEEEEeecCCCCCCCCCcccCCCCCC-CCCCchhHHHHHHHHHHCCCcEEEEeeecCCCCC-C-chHHHHHHHHHHHHhh
Q 019890 129 TATIMILGDTCTRGCRFCNVKTSRAP-PPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLA-D-QGSGHFAQTVRKLKEL 205 (334)
Q Consensus 129 Tatfm~igdgCtr~C~FC~V~~~r~p-~~ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~-d-~Ga~~fa~lIr~Ik~~ 205 (334)
+.+|+.+++||+.+|+||++|..+++ .+.+++++.++++.+.+.|+++|+|+++|-+.+. | .+...|+++++.+.+.
T Consensus 140 ~~~~v~i~rGC~~~CsFC~ip~~~G~~rsr~~e~Iv~Ei~~l~~~g~kei~l~~~n~~~yg~~~~~~~~l~~Ll~~~~~~ 219 (434)
T PRK14330 140 HHAWVTIIYGCNRFCTYCIVPYTRGREKSRPMEDILEEVEKLAKQGYREVTFLGQNVDAYGKDLKDGSSLAKLLEEASKI 219 (434)
T ss_pred cEEEEEcccCCCCCCCCCceECcCCCCccCCHHHHHHHHHHHHHCCCcEEEEEEecccccccCCCCCccHHHHHHHHHhc
Confidence 78899999999999999999987754 4678999999999999999999999998754321 1 0123578888877553
Q ss_pred CCCC-------------ceeee--ecccc--ccccccchhh-HHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCcceEeec
Q 019890 206 KPNM-------------LIEAL--VAKSG--LNVFAHNIET-VEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTS 267 (334)
Q Consensus 206 ~P~i-------------~vE~L--l~~ag--~dv~~HnlET-v~~l~~~Vr~r~~tye~sL~vL~~ak~~~p~Gl~tkTg 267 (334)
+++ +-+++ ++++| ...+...+|+ .+++++.|+ |+++.+++++.++.+++..|+ +.+.++
T Consensus 220 -~~~~~~~~~~~~p~~~~~ell~~l~~~~~~~~~l~iglQSgsd~vLk~M~-R~~~~~~~~~~i~~lr~~~~~-i~i~~d 296 (434)
T PRK14330 220 -EGIERIWFLTSYPTDFSDELIEVIANSPKVAKSIHLPVQSGSNRILKLMN-RRYTREEYLELIEKIRSKVPD-ASISSD 296 (434)
T ss_pred -CCceEEEEecCChhhcCHHHHHHHhcCCcccCceecCcCCCCHHHHHhcC-CCCCHHHHHHHHHHHHHhCCC-CEEEEE
Confidence 222 11222 44554 3345555787 599999999 899999999999999998886 999999
Q ss_pred eEEec-CCCHHHHHHHHHHHHHcCCcEEeeccCc-CCCCCCCc-ccccCCHHH----HHHHHHHHHHh
Q 019890 268 IMLGC-GETPDQVVSTMEKVRAAGVDVMTFGQYM-RPSKRHMP-VSEYITPEA----FERYRALGMEM 328 (334)
Q Consensus 268 iMVGl-GETdEE~~etl~~Lre~gvd~vtigqYl-rP~~~h~~-v~~yv~P~~----f~~~~~~a~~~ 328 (334)
+|+|| |||+++|.++++++++++++.+++|.|. +|++.... +.+.+++++ ..++.++++++
T Consensus 297 ~IvGfPgET~edf~~tl~fi~~~~~~~~~~~~~sp~pGT~~~~~~~~~v~~~~~~~r~~~l~~~~~~~ 364 (434)
T PRK14330 297 IIVGFPTETEEDFMETVDLVEKAQFERLNLAIYSPREGTVAWKYYKDDVPYEEKVRRMQYLLNLQKRI 364 (434)
T ss_pred EEEECCCCCHHHHHHHHHHHHhcCCCEEeeeeccCCCCChhhhhCccCCCHHHHHHHHHHHHHHHHHH
Confidence 99999 9999999999999999999999999997 78877665 456676654 33445555544
No 30
>PRK14328 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.90 E-value=1.5e-22 Score=203.61 Aligned_cols=197 Identities=17% Similarity=0.291 Sum_probs=155.3
Q ss_pred eEEEEeecCCCCCCCCCcccCCCCCC-CCCCchhHHHHHHHHHHCCCcEEEEeeecCCCCC-Cc-hHHHHHHHHHHHHhh
Q 019890 129 TATIMILGDTCTRGCRFCNVKTSRAP-PPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLA-DQ-GSGHFAQTVRKLKEL 205 (334)
Q Consensus 129 Tatfm~igdgCtr~C~FC~V~~~r~p-~~ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~-d~-Ga~~fa~lIr~Ik~~ 205 (334)
+.+|+.+++||+++|+||++|..+++ .+.+++++.++++.+.+.|+++|+|+|++-.++. |. +...|+++++.|.+.
T Consensus 147 ~~~~i~i~rGC~~~CsfC~~p~~~g~~Rsr~~e~Iv~Ei~~l~~~G~~ei~l~~~~~~~yg~d~~~~~~l~~Ll~~l~~~ 226 (439)
T PRK14328 147 VKAFVTIMYGCNNFCTYCIVPYVRGRERSRKPEDIIAEIKELVSEGYKEVTLLGQNVNSYGKDLEEKIDFADLLRRVNEI 226 (439)
T ss_pred cEEEEEHHhCcCCCCCCCCcccccCCcccCCHHHHHHHHHHHHHCCCcEEEEeccccCcCCcCCCCCcCHHHHHHHHHhc
Confidence 78899999999999999999987754 4678999999999999999999999998743221 10 113588888888753
Q ss_pred CCCC-cee------------ee--ecccc--ccccccchhh-HHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCcceEeec
Q 019890 206 KPNM-LIE------------AL--VAKSG--LNVFAHNIET-VEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTS 267 (334)
Q Consensus 206 ~P~i-~vE------------~L--l~~ag--~dv~~HnlET-v~~l~~~Vr~r~~tye~sL~vL~~ak~~~p~Gl~tkTg 267 (334)
+++ .+. ++ +.+++ ...+...+|+ ++++++.|+ |+++.+++++.++.+++.+|+ +.+.++
T Consensus 227 -~~~~~ir~~~~~P~~i~~ell~~l~~~~~~~~~l~iglQSgsd~vLk~M~-R~~~~~~~~~~i~~lr~~~~~-i~i~~d 303 (439)
T PRK14328 227 -DGLERIRFMTSHPKDLSDDLIEAIADCDKVCEHIHLPVQSGSNRILKKMN-RHYTREYYLELVEKIKSNIPD-VAITTD 303 (439)
T ss_pred -CCCcEEEEecCChhhcCHHHHHHHHhCCCcCceeeeCCCcCCHHHHHhCC-CCCCHHHHHHHHHHHHHhCCC-CEEEEE
Confidence 332 122 22 44443 4445556787 589999999 899999999999999998887 889999
Q ss_pred eEEec-CCCHHHHHHHHHHHHHcCCcEEeeccCc-CCCCCCCcccccCCHHH----HHHHHHHHHHh
Q 019890 268 IMLGC-GETPDQVVSTMEKVRAAGVDVMTFGQYM-RPSKRHMPVSEYITPEA----FERYRALGMEM 328 (334)
Q Consensus 268 iMVGl-GETdEE~~etl~~Lre~gvd~vtigqYl-rP~~~h~~v~~yv~P~~----f~~~~~~a~~~ 328 (334)
+|+|| |||++|+.++++++++++++.++++.|+ +|+.........++++. +..+.++++++
T Consensus 304 ~IvG~PgET~ed~~~tl~~i~~l~~~~~~~~~~sp~pGT~~~~~~~~v~~~~~~~r~~~l~~~~~~~ 370 (439)
T PRK14328 304 IIVGFPGETEEDFEETLDLVKEVRYDSAFTFIYSKRKGTPAAKMEDQVPEDVKHERFNRLVELQNKI 370 (439)
T ss_pred EEEECCCCCHHHHHHHHHHHHhcCCCcccceEecCCCCChhhhCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 99999 9999999999999999999999999997 78777666666777765 34455555443
No 31
>TIGR01574 miaB-methiolase tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB. Hits to this model span all major groups of bacteria and eukaryotes, but not archaea, which are known to lack this particular tRNA modification. The enzyme from Thermotoga maritima has been cloned, expressed, spectroscopically characterized and shown to complement the E. coli MiaB enzyme.
Probab=99.90 E-value=2.2e-22 Score=202.37 Aligned_cols=197 Identities=17% Similarity=0.268 Sum_probs=155.8
Q ss_pred eEEEEeecCCCCCCCCCcccCCCCCC-CCCCchhHHHHHHHHHHCCCcEEEEeeecCCCC-C-C--chHHHHHHHHHHHH
Q 019890 129 TATIMILGDTCTRGCRFCNVKTSRAP-PPPDPDEPTNVAEAIASWGLDYVVITSVDRDDL-A-D--QGSGHFAQTVRKLK 203 (334)
Q Consensus 129 Tatfm~igdgCtr~C~FC~V~~~r~p-~~ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl-~-d--~Ga~~fa~lIr~Ik 203 (334)
+.+|+.+++||+++|+||+++..+++ ...+++++.++++.+.+.|+++|+|||+|-..+ . | ++...|.+++++|.
T Consensus 145 ~~~~v~i~rGC~~~CsfC~~~~~~G~~rsr~~e~I~~Ei~~l~~~g~~ei~l~~~~~~~y~g~d~~~~~~~l~~Ll~~l~ 224 (438)
T TIGR01574 145 YKSFINIMIGCNKFCTYCIVPYTRGDEISRPFDDILQEVQKLAEKGVREITLLGQNVNAYRGKDFEGKTMDFSDLLRELS 224 (438)
T ss_pred eeEEeehhcCCCCCCCCCCeeeecCCCcccCHHHHHHHHHHHHHcCCeEEEEEecccCCccCCCCCCCcccHHHHHHHHH
Confidence 78899999999999999999987754 467899999999999999999999999874333 1 1 12235889999987
Q ss_pred hhCCCC-ce------------eee--ecccc--ccccccchhh-HHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCcceEe
Q 019890 204 ELKPNM-LI------------EAL--VAKSG--LNVFAHNIET-VEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTK 265 (334)
Q Consensus 204 ~~~P~i-~v------------E~L--l~~ag--~dv~~HnlET-v~~l~~~Vr~r~~tye~sL~vL~~ak~~~p~Gl~tk 265 (334)
+. +++ .+ +++ +.++| ...+...+|+ .+++++.|+ |+++.+++++.++.+++..|+ +.+.
T Consensus 225 ~~-~~~~~ir~~~~~p~~l~~ell~~l~~~g~~~~~l~iglQSgsd~vLk~m~-R~~t~~~~~~~v~~ir~~~~~-i~i~ 301 (438)
T TIGR01574 225 TI-DGIERIRFTSSHPLDFDDDLIEVFANNPKLCKSMHLPVQSGSSEILKLMK-RGYTREWYLNLVRKLRAACPN-VSIS 301 (438)
T ss_pred hc-CCceEEEEecCCcccCCHHHHHHHHhCCCccCceeeCCCcCCHHHHHhcC-CCCCHHHHHHHHHHHHHhCCC-CeEe
Confidence 53 332 11 112 45555 4455556887 589999999 899999999999999998886 9999
Q ss_pred eceEEec-CCCHHHHHHHHHHHHHcCCcEEeeccCc-CCCCCCCcccccCCHHHH----HHHHHHHHHh
Q 019890 266 TSIMLGC-GETPDQVVSTMEKVRAAGVDVMTFGQYM-RPSKRHMPVSEYITPEAF----ERYRALGMEM 328 (334)
Q Consensus 266 TgiMVGl-GETdEE~~etl~~Lre~gvd~vtigqYl-rP~~~h~~v~~yv~P~~f----~~~~~~a~~~ 328 (334)
+++|+|| |||++||.++++++++++++.+++++|. +|++....+...+++++. ..+.+++.++
T Consensus 302 ~d~IvG~PgEt~ed~~~tl~~i~~~~~~~~~~~~~sp~pGT~~~~~~~~v~~~~~~~r~~~l~~~~~~~ 370 (438)
T TIGR01574 302 TDIIVGFPGETEEDFEETLDLLREVEFDSAFSFIYSPRPGTPAADMPDQIPEEIKKRRLQRLQARHNEI 370 (438)
T ss_pred eCEEEeCCCCCHHHHHHHHHHHHhcCCCeeeeEEecCCCCCchhhCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 9999999 9999999999999999999999999997 788776666666777654 3344554443
No 32
>PRK14331 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.89 E-value=2.4e-22 Score=202.00 Aligned_cols=198 Identities=14% Similarity=0.247 Sum_probs=155.9
Q ss_pred ceEEEEeecCCCCCCCCCcccCCCCCC-CCCCchhHHHHHHHHHHCCCcEEEEeeecCCCCCC-chHHHHHHHHHHHHhh
Q 019890 128 ATATIMILGDTCTRGCRFCNVKTSRAP-PPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLAD-QGSGHFAQTVRKLKEL 205 (334)
Q Consensus 128 ~Tatfm~igdgCtr~C~FC~V~~~r~p-~~ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d-~Ga~~fa~lIr~Ik~~ 205 (334)
.+.+|+.+++||+.+|+||++|..+++ ...+++++.++++.+.+.|+++|+|++.+-..++. .+...|.+++++|.+.
T Consensus 145 ~~~a~v~i~rGC~~~CsFC~~p~~~g~~rsr~~e~V~~Ei~~l~~~g~~eI~l~d~~~~~y~~~~~~~~~~~Ll~~l~~~ 224 (437)
T PRK14331 145 KYCAYVTVMRGCDKKCTYCVVPKTRGKERSRRLGSILDEVQWLVDDGVKEIHLIGQNVTAYGKDIGDVPFSELLYAVAEI 224 (437)
T ss_pred CcEEEEEeccCcCCCCccCCcccCCCCcccCCHHHHHHHHHHHHHCCCeEEEEeeeccccccCCCCCCCHHHHHHHHhcC
Confidence 378899999999999999999987754 46789999999999999999999999987422211 1113578888888664
Q ss_pred CCCC-ce------------eee--eccc--cccccccchhh-HHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCcceEeec
Q 019890 206 KPNM-LI------------EAL--VAKS--GLNVFAHNIET-VEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTS 267 (334)
Q Consensus 206 ~P~i-~v------------E~L--l~~a--g~dv~~HnlET-v~~l~~~Vr~r~~tye~sL~vL~~ak~~~p~Gl~tkTg 267 (334)
+++ .+ |++ ++++ +...+...+|+ ++++++.|+ ++++.++.++.++.+++.+|+ +.+.++
T Consensus 225 -~g~~~i~~~~~~p~~l~~ell~~~~~~~~~~~~l~igiqSgsd~vLk~m~-R~~t~~~~~~~v~~lr~~~~g-i~i~~d 301 (437)
T PRK14331 225 -DGVERIRFTTGHPRDLDEDIIKAMADIPQVCEHLHLPFQAGSDRILKLMD-RGYTKEEYLEKIELLKEYIPD-ITFSTD 301 (437)
T ss_pred -CCccEEEEeccCcccCCHHHHHHHHcCCccCCceecccccCChHHHHHcC-CCCCHHHHHHHHHHHHHhCCC-CEEecC
Confidence 221 11 112 4444 34555556887 599999999 899999999999999998886 999999
Q ss_pred eEEec-CCCHHHHHHHHHHHHHcCCcEEeeccCc-CCCCCCCcccccCCHHH----HHHHHHHHHHh
Q 019890 268 IMLGC-GETPDQVVSTMEKVRAAGVDVMTFGQYM-RPSKRHMPVSEYITPEA----FERYRALGMEM 328 (334)
Q Consensus 268 iMVGl-GETdEE~~etl~~Lre~gvd~vtigqYl-rP~~~h~~v~~yv~P~~----f~~~~~~a~~~ 328 (334)
+|+|| |||+|||.++++++++++++.+++|.|. +|++........+++++ ...+.++++++
T Consensus 302 ~IvG~PgET~ed~~~tl~~l~~l~~~~i~~f~~sp~pGT~~~~~~~~~~~~~~~~r~~~l~~~~~~~ 368 (437)
T PRK14331 302 IIVGFPTETEEDFEETLDVLKKVEFEQVFSFKYSPRPGTPAAYMEGQEPDEVKTKRMNRLLELQKEI 368 (437)
T ss_pred EEEECCCCCHHHHHHHHHHHHhcCcceeeeeEecCCCCcchhhCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 99999 9999999999999999999999999997 78887766666677755 34555555554
No 33
>PRK06256 biotin synthase; Validated
Probab=99.89 E-value=6.8e-22 Score=191.48 Aligned_cols=191 Identities=19% Similarity=0.288 Sum_probs=147.7
Q ss_pred EEEee-cCCCCCCCCCcccCCCCC-C----CCCCchhHHHHHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHh
Q 019890 131 TIMIL-GDTCTRGCRFCNVKTSRA-P----PPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKE 204 (334)
Q Consensus 131 tfm~i-gdgCtr~C~FC~V~~~r~-p----~~ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~ 204 (334)
+++.+ +++|+.+|.||+++...+ + ..++++|+.+.++.+.+.|+++++|++...+ ..+...+++.++++.|++
T Consensus 59 ~i~~~~s~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~~~~~~~~~~g~~~~~l~~~g~~-p~~~~~~~~~e~i~~i~~ 137 (336)
T PRK06256 59 TIINAKSGLCPEDCGYCSQSAGSSAPVYRYAWLDIEELIEAAKEAIEEGAGTFCIVASGRG-PSGKEVDQVVEAVKAIKE 137 (336)
T ss_pred EeeeccCCCCCCCCccCCCcCCCCCCCceecCCCHHHHHHHHHHHHHCCCCEEEEEecCCC-CCchHHHHHHHHHHHHHh
Confidence 33433 899999999999986432 1 2479999999999999999988877553321 222234688899999987
Q ss_pred hCCCCceee----e-------eccccccccccchhhHHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCcceEeeceEEecC
Q 019890 205 LKPNMLIEA----L-------VAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCG 273 (334)
Q Consensus 205 ~~P~i~vE~----L-------l~~ag~dv~~HnlETv~~l~~~Vr~r~~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGlG 273 (334)
. +++.+.+ + ++++|++.++||+||.+++|+.|+ ++++|+++++.++.+++. |+.+++++|+|+|
T Consensus 138 ~-~~i~~~~~~g~l~~e~l~~LkeaG~~~v~~~lEts~~~~~~i~-~~~t~~~~i~~i~~a~~~---Gi~v~~~~I~Glg 212 (336)
T PRK06256 138 E-TDLEICACLGLLTEEQAERLKEAGVDRYNHNLETSRSYFPNVV-TTHTYEDRIDTCEMVKAA---GIEPCSGGIIGMG 212 (336)
T ss_pred c-CCCcEEecCCcCCHHHHHHHHHhCCCEEecCCccCHHHHhhcC-CCCCHHHHHHHHHHHHHc---CCeeccCeEEeCC
Confidence 5 5543322 1 889999999999999999999999 689999999999999996 7999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCcEEeeccCcC-CCCCCCcccccCCHHHHHHHHHHHHHh
Q 019890 274 ETPDQVVSTMEKVRAAGVDVMTFGQYMR-PSKRHMPVSEYITPEAFERYRALGMEM 328 (334)
Q Consensus 274 ETdEE~~etl~~Lre~gvd~vtigqYlr-P~~~h~~v~~yv~P~~f~~~~~~a~~~ 328 (334)
||++|+.+++++|++++++.++++.|.. |... +.-...++++++..+-.+++-+
T Consensus 213 Et~ed~~~~~~~l~~l~~~~v~i~~l~P~pGT~-l~~~~~~~~~e~l~~ia~~Rl~ 267 (336)
T PRK06256 213 ESLEDRVEHAFFLKELDADSIPINFLNPIPGTP-LENHPELTPLECLKTIAIFRLI 267 (336)
T ss_pred CCHHHHHHHHHHHHhCCCCEEeecccccCCCCC-CCCCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999985542 3332 3233456776665554444433
No 34
>PRK14333 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.89 E-value=3.3e-22 Score=201.67 Aligned_cols=187 Identities=16% Similarity=0.281 Sum_probs=150.4
Q ss_pred eEEEEeecCCCCCCCCCcccCCCCCC-CCCCchhHHHHHHHHHHCCCcEEEEeeecCCCCC-C--ch------HHHHHHH
Q 019890 129 TATIMILGDTCTRGCRFCNVKTSRAP-PPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLA-D--QG------SGHFAQT 198 (334)
Q Consensus 129 Tatfm~igdgCtr~C~FC~V~~~r~p-~~ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~-d--~G------a~~fa~l 198 (334)
+.+|+++++||+.+|+||++|..++. .+.+++++.++++.+.+.|+++|+|+|+|-+++. | ++ ...|+++
T Consensus 148 ~~a~i~i~~GC~~~CsFC~ip~~rG~~rsr~~e~V~~Ei~~l~~~g~kei~l~~~~~~~yg~d~~~~~p~~~~~~~l~~L 227 (448)
T PRK14333 148 ITAWVNVIYGCNERCTYCVVPSVRGKEQSRTPEAIRAEIEELAAQGYKEITLLGQNIDAYGRDLPGTTPEGRHQHTLTDL 227 (448)
T ss_pred eeEEEEhhcCCCCCCCCCceecccCCCcccCHHHHHHHHHHHHHCCCcEEEEEecccchhcCCCCCccccccccccHHHH
Confidence 67899999999999999999987754 4678999999999999999999999998754321 1 11 1368999
Q ss_pred HHHHHhhCCCC---ce----------eee--eccc--cccccccchhh-HHHHHHhhcCCCCCHHHHHHHHHHHHHhCCC
Q 019890 199 VRKLKELKPNM---LI----------EAL--VAKS--GLNVFAHNIET-VEELQSAVRDHRANFKQSLDVLMMAKDYVPA 260 (334)
Q Consensus 199 Ir~Ik~~~P~i---~v----------E~L--l~~a--g~dv~~HnlET-v~~l~~~Vr~r~~tye~sL~vL~~ak~~~p~ 260 (334)
+++|.+. +++ .+ +++ +.+. +...+.-.+|+ .+++++.|+ |+++.+++++.++.+++..|+
T Consensus 228 l~~i~~~-~~~~rir~~~~~p~~~~~eli~~~~~~~~~~~~l~igiQSgsd~vLk~m~-R~~t~e~~~~~i~~lr~~~p~ 305 (448)
T PRK14333 228 LYYIHDV-EGIERIRFATSHPRYFTERLIKACAELPKVCEHFHIPFQSGDNEILKAMA-RGYTHEKYRRIIDKIREYMPD 305 (448)
T ss_pred HHHHHhc-CCCeEEEECCCChhhhhHHHHHHHhcCCcccccccCCCccCCHHHHHhcC-CCCCHHHHHHHHHHHHHhCCC
Confidence 9999764 432 11 111 2332 22333334786 589999999 899999999999999999887
Q ss_pred cceEeeceEEec-CCCHHHHHHHHHHHHHcCCcEEeeccCc-CCCCCCCcccccCCHHHH
Q 019890 261 GTLTKTSIMLGC-GETPDQVVSTMEKVRAAGVDVMTFGQYM-RPSKRHMPVSEYITPEAF 318 (334)
Q Consensus 261 Gl~tkTgiMVGl-GETdEE~~etl~~Lre~gvd~vtigqYl-rP~~~h~~v~~yv~P~~f 318 (334)
+.+.+++|+|| |||+|+|.++++++++++++.++++.|+ +|++....+...|++++-
T Consensus 306 -i~i~~d~IvGfPgET~edf~~tl~~l~~~~~~~~~~~~~sp~pGT~~~~~~~~v~~~~~ 364 (448)
T PRK14333 306 -ASISADAIVGFPGETEAQFENTLKLVEEIGFDQLNTAAYSPRPGTPAALWDNQLSEEVK 364 (448)
T ss_pred -cEEEeeEEEECCCCCHHHHHHHHHHHHHcCCCEEeeeeeecCCCCchhhCCCCCCHHHH
Confidence 89999999999 9999999999999999999999999997 798887777777887663
No 35
>TIGR01579 MiaB-like-C MiaB-like tRNA modifying enzyme. This clade is a member of a subfamily (TIGR00089) and spans low GC Gram positive bacteria, alpha and epsilon proteobacteria, Campylobacter, Porphyromonas, Aquifex, Thermotoga, Chlamydia, Treponema and Fusobacterium.
Probab=99.89 E-value=4.4e-22 Score=198.33 Aligned_cols=197 Identities=16% Similarity=0.302 Sum_probs=155.1
Q ss_pred eEEEEeecCCCCCCCCCcccCCCCCC-CCCCchhHHHHHHHHHHCCCcEEEEeeecCCCCCCc--hHHHHHHHHHHHHhh
Q 019890 129 TATIMILGDTCTRGCRFCNVKTSRAP-PPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQ--GSGHFAQTVRKLKEL 205 (334)
Q Consensus 129 Tatfm~igdgCtr~C~FC~V~~~r~p-~~ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~--Ga~~fa~lIr~Ik~~ 205 (334)
..+|+.++.||+.+|+||+++..+++ ...+++++.++++.+.+.|+++|+|+++|-..+.+. +...+.+++++|++.
T Consensus 138 ~~~~i~isrGCp~~CsfC~~~~~~g~~r~r~~e~I~~Ei~~l~~~g~~ei~l~~~~~~~y~~d~~~~~~l~~Ll~~l~~~ 217 (414)
T TIGR01579 138 TRAFIKVQDGCNFFCSYCIIPFARGRSRSVPMEAILKQVKILVAKGYKEIVLTGVNLGSYGDDLKNGTSLAKLLEQILQI 217 (414)
T ss_pred eEEEEEeccCcCCCCCCCceeeecCCCccCCHHHHHHHHHHHHHCCCceEEEeeEccchhccCCCCCCcHHHHHHHHhcC
Confidence 67899999999999999999986653 468999999999999999999999999874322210 124688999988754
Q ss_pred CCCC-ce------------eee--ecccc--ccccccchhh-HHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCcceEeec
Q 019890 206 KPNM-LI------------EAL--VAKSG--LNVFAHNIET-VEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTS 267 (334)
Q Consensus 206 ~P~i-~v------------E~L--l~~ag--~dv~~HnlET-v~~l~~~Vr~r~~tye~sL~vL~~ak~~~p~Gl~tkTg 267 (334)
|++ .+ |++ +++++ ...+...+|+ .+++++.|+ |+++.++.++.++.+++..++ +.+.++
T Consensus 218 -~~~~~ir~~~~~p~~~~~ell~~m~~~~~~~~~l~lglESgs~~vLk~m~-R~~~~~~~~~~v~~l~~~~~g-i~i~~~ 294 (414)
T TIGR01579 218 -PGIKRIRLSSIDPEDIDEELLEAIASEKRLCPHLHLSLQSGSDRVLKRMR-RKYTRDDFLKLVNKLRSVRPD-YAFGTD 294 (414)
T ss_pred -CCCcEEEEeCCChhhCCHHHHHHHHhcCccCCCeEECCCcCChHHHHhcC-CCCCHHHHHHHHHHHHHhCCC-Ceeeee
Confidence 332 11 122 44444 3445556897 589999999 899999999999999997665 999999
Q ss_pred eEEec-CCCHHHHHHHHHHHHHcCCcEEeeccCc-CCCCCCCcccccCCHHH----HHHHHHHHHHh
Q 019890 268 IMLGC-GETPDQVVSTMEKVRAAGVDVMTFGQYM-RPSKRHMPVSEYITPEA----FERYRALGMEM 328 (334)
Q Consensus 268 iMVGl-GETdEE~~etl~~Lre~gvd~vtigqYl-rP~~~h~~v~~yv~P~~----f~~~~~~a~~~ 328 (334)
+|+|| |||+|+|.+++++++++++|.++++.|. +|+.........|++++ ..++.++++++
T Consensus 295 ~IvG~PgET~ed~~~tl~~i~~~~~~~~~~~~~sp~pGT~~~~~~~~v~~~~~~~r~~~l~~~~~~~ 361 (414)
T TIGR01579 295 IIVGFPGESEEDFQETLRMVKEIEFSHLHIFPYSARPGTPASTMKDKVPETIKKERVKRLKELAEKN 361 (414)
T ss_pred EEEECCCCCHHHHHHHHHHHHhCCCCEEEeeecCCCCCCchhhCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 99999 9999999999999999999999999997 78887766666777765 34444444443
No 36
>TIGR03699 mena_SCO4550 menaquinone biosynthesis protein, SCO4550 family. members of this protein family are involved in menaquinone biosynthesis by an alternate pathway via futalosine.
Probab=99.89 E-value=4.2e-22 Score=193.58 Aligned_cols=184 Identities=19% Similarity=0.353 Sum_probs=145.6
Q ss_pred ecCCCCCCCCCcccCCCCC-C--CCCCchhHHHHHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhCCCCce
Q 019890 135 LGDTCTRGCRFCNVKTSRA-P--PPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLI 211 (334)
Q Consensus 135 igdgCtr~C~FC~V~~~r~-p--~~ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~P~i~v 211 (334)
++++|+++|+||++....+ + ..++++|+.+.++.+++.|+++++|+|+.. ++...+++.++++.|++..|++.+
T Consensus 47 ~s~~C~~~C~fC~~~~~~~~~~~~~ls~eei~~~~~~~~~~G~~~i~l~gG~~---p~~~~~~~~~li~~Ik~~~~~i~~ 123 (340)
T TIGR03699 47 YTNICVVGCKFCAFYRAPGHPEGYVLSVEEILQKIEELVAYGGTQILLQGGVN---PDLGLDYYEDLFRAIKARFPHIHI 123 (340)
T ss_pred cchhhccCCccCCcccCCCCccccCCCHHHHHHHHHHHHHcCCcEEEEecCCC---CCCCHHHHHHHHHHHHHHCCCcCC
Confidence 6999999999999865332 1 247999999999999999999999998753 445577899999999988776543
Q ss_pred --------------------eee--eccccccccccc-hhhH-HHHHHhhcCCCCCHHHHHHHHHHHHHhCCCcceEeec
Q 019890 212 --------------------EAL--VAKSGLNVFAHN-IETV-EELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTS 267 (334)
Q Consensus 212 --------------------E~L--l~~ag~dv~~Hn-lETv-~~l~~~Vr~r~~tye~sL~vL~~ak~~~p~Gl~tkTg 267 (334)
|.+ ++++|++.++|+ .|+. +++++.+.+...++++++++++.+++. |+.++++
T Consensus 124 ~~~s~~ei~~~~~~~g~~~~e~l~~Lk~aG~~~~~~~g~E~~~~~~~~~~~~~~~s~~~~l~~i~~a~~~---Gi~v~~~ 200 (340)
T TIGR03699 124 HSFSPVEIVYIAKKEGLSLREVLERLKEAGLDSIPGGGAEILSDRVRKIISPKKISSEEWLEVMETAHKL---GLPTTAT 200 (340)
T ss_pred CCCCHHHHHHHhccCCCCHHHHHHHHHHcCCCcCCCCcccccCHHHHHhhCCCCCCHHHHHHHHHHHHHc---CCCccce
Confidence 122 889999999984 8875 888888875457999999999999997 7999999
Q ss_pred eEEecCCCHHHHHHHHHHHHHcCCcEEee----ccCcCCCCCCCcccccCCHHHHHHHHHHHH
Q 019890 268 IMLGCGETPDQVVSTMEKVRAAGVDVMTF----GQYMRPSKRHMPVSEYITPEAFERYRALGM 326 (334)
Q Consensus 268 iMVGlGETdEE~~etl~~Lre~gvd~vti----gqYlrP~~~h~~v~~yv~P~~f~~~~~~a~ 326 (334)
+|+|+|||+||+++++.+|++++.+..++ .++.+|....+......+|++ .++.+|.
T Consensus 201 ~iiGlgEt~ed~~~~l~~l~~l~~~~~~~~~fIP~~f~p~~tpl~~~~~~~~~e--~l~~iA~ 261 (340)
T TIGR03699 201 MMFGHVETLEDRIEHLERIRELQDKTGGFTAFIPWTFQPGNTELGKKRPATSTE--YLKVLAI 261 (340)
T ss_pred eEeeCCCCHHHHHHHHHHHHHhchhhCCeeEEEeecccCCCCcccCCCCCCHHH--HHHHHHH
Confidence 99999999999999999999999987443 333346444455445667754 5555554
No 37
>PRK14862 rimO ribosomal protein S12 methylthiotransferase; Provisional
Probab=99.89 E-value=4.3e-22 Score=200.56 Aligned_cols=185 Identities=16% Similarity=0.306 Sum_probs=148.5
Q ss_pred eEEEEeecCCCCCCCCCcccCCCCCC-CCCCchhHHHHHHHHHHCCCcEEEEeeecCC----CCCCc-----h---HHHH
Q 019890 129 TATIMILGDTCTRGCRFCNVKTSRAP-PPPDPDEPTNVAEAIASWGLDYVVITSVDRD----DLADQ-----G---SGHF 195 (334)
Q Consensus 129 Tatfm~igdgCtr~C~FC~V~~~r~p-~~ld~~Ep~~~A~av~~~GlkeVVLTSv~rd----Dl~d~-----G---a~~f 195 (334)
+.+|++++.||+.+|+||++|..+++ .+.+++++.++++.+.+.|+++|+|+|+|-. |+... | ..++
T Consensus 139 ~~a~v~isrGCp~~CsFC~ip~~~G~~rsr~~e~Vv~Ei~~l~~~g~kei~l~~~d~~~yg~d~~~~~~~~~~~~~~~~~ 218 (440)
T PRK14862 139 HYAYLKISEGCNHRCTFCIIPSMRGDLVSRPIGDVLREAERLVKAGVKELLVISQDTSAYGVDVKYRTGFWNGRPVKTRM 218 (440)
T ss_pred cEEEEEeccCCCCCCccCCcccccCCccccCHHHHHHHHHHHHHCCCceEEEEecChhhhccccccccccccccchhhHH
Confidence 78899999999999999999987753 4689999999999999999999999998732 11100 1 2578
Q ss_pred HHHHHHHHhhCCCCc----------eeee--ecccccccccc---chhh-HHHHHHhhcCCCCCHHHHHHHHHHHHHhCC
Q 019890 196 AQTVRKLKELKPNML----------IEAL--VAKSGLNVFAH---NIET-VEELQSAVRDHRANFKQSLDVLMMAKDYVP 259 (334)
Q Consensus 196 a~lIr~Ik~~~P~i~----------vE~L--l~~ag~dv~~H---nlET-v~~l~~~Vr~r~~tye~sL~vL~~ak~~~p 259 (334)
.+++++|.+....+. -|++ +++ | -++.| -+|+ ++++++.|+ +.+++++.++.++.+++..|
T Consensus 219 ~~Ll~~l~~~~~~~r~~~~~p~~~~dell~~m~~-g-~~~~~l~IglESgs~~vLk~m~-r~~~~~~~~~~i~~lr~~~~ 295 (440)
T PRK14862 219 TDLCEALGELGAWVRLHYVYPYPHVDEVIPLMAE-G-KILPYLDIPFQHASPRVLKRMK-RPASVEKTLERIKKWREICP 295 (440)
T ss_pred HHHHHHHHhcCCEEEEecCCCCcCCHHHHHHHhc-C-CCccccccccccCCHHHHHhcC-CCCCHHHHHHHHHHHHHHCC
Confidence 999999886521001 1233 344 4 23222 3686 589999999 79999999999999999888
Q ss_pred CcceEeeceEEec-CCCHHHHHHHHHHHHHcCCcEEeeccCc-CCCCCCCcccccCCHHH
Q 019890 260 AGTLTKTSIMLGC-GETPDQVVSTMEKVRAAGVDVMTFGQYM-RPSKRHMPVSEYITPEA 317 (334)
Q Consensus 260 ~Gl~tkTgiMVGl-GETdEE~~etl~~Lre~gvd~vtigqYl-rP~~~h~~v~~yv~P~~ 317 (334)
+ +.+.+++|+|| |||+|||.+++++++++++|.+++|.|+ +|+.........|++++
T Consensus 296 ~-i~i~t~~IvGfPgET~edf~~tl~fi~e~~~d~~~~f~ysP~pGT~a~~~~~~v~~~~ 354 (440)
T PRK14862 296 D-LTIRSTFIVGFPGETEEDFQMLLDFLKEAQLDRVGCFKYSPVEGATANDLPDQVPEEV 354 (440)
T ss_pred C-ceecccEEEECCCCCHHHHHHHHHHHHHcCCCeeeeEeecCCCCCchhhCCCCCCHHH
Confidence 7 99999999999 9999999999999999999999999998 78887655667788876
No 38
>PRK07094 biotin synthase; Provisional
Probab=99.89 E-value=9.9e-22 Score=189.23 Aligned_cols=163 Identities=17% Similarity=0.344 Sum_probs=140.7
Q ss_pred EEEEeecCCCCCCCCCcccCCCCCC---CCCCchhHHHHHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhC
Q 019890 130 ATIMILGDTCTRGCRFCNVKTSRAP---PPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELK 206 (334)
Q Consensus 130 atfm~igdgCtr~C~FC~V~~~r~p---~~ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~ 206 (334)
.+++.++++|+.+|+||+++...+. ..++++|+.++++.+.+.|+++|+|+|++. +....+++.++++.|++.
T Consensus 40 ~~~i~~s~gC~~~C~fC~~~~~~~~~~r~~ls~eei~~~~~~~~~~g~~~i~l~gG~~---~~~~~~~l~~l~~~i~~~- 115 (323)
T PRK07094 40 RGLIEFSNYCRNNCLYCGLRRDNKNIERYRLSPEEILECAKKAYELGYRTIVLQSGED---PYYTDEKIADIIKEIKKE- 115 (323)
T ss_pred EEEEEECCCCCCCCEeCCcccCCCCCcCcCCCHHHHHHHHHHHHHCCCCEEEEecCCC---CCCCHHHHHHHHHHHHcc-
Confidence 4467789999999999999865431 236899999999999999999999998862 223457899999999876
Q ss_pred CCCceee---------e--eccccccccccchhhH-HHHHHhhcCCCCCHHHHHHHHHHHHHhCCCcceEeeceEEec-C
Q 019890 207 PNMLIEA---------L--VAKSGLNVFAHNIETV-EELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC-G 273 (334)
Q Consensus 207 P~i~vE~---------L--l~~ag~dv~~HnlETv-~~l~~~Vr~r~~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGl-G 273 (334)
+++.+.+ + ++++|++.+.+++||. +++++.++ ++.+++++++.++.+++. |+.+++++|+|| |
T Consensus 116 ~~l~i~~~~g~~~~e~l~~Lk~aG~~~v~~glEs~~~~~~~~i~-~~~s~~~~~~~i~~l~~~---Gi~v~~~~iiGlpg 191 (323)
T PRK07094 116 LDVAITLSLGERSYEEYKAWKEAGADRYLLRHETADKELYAKLH-PGMSFENRIACLKDLKEL---GYEVGSGFMVGLPG 191 (323)
T ss_pred CCceEEEecCCCCHHHHHHHHHcCCCEEEeccccCCHHHHHHhC-CCCCHHHHHHHHHHHHHc---CCeecceEEEECCC
Confidence 5554432 1 8999999999999996 99999999 589999999999999996 799999999999 9
Q ss_pred CCHHHHHHHHHHHHHcCCcEEeeccCc
Q 019890 274 ETPDQVVSTMEKVRAAGVDVMTFGQYM 300 (334)
Q Consensus 274 ETdEE~~etl~~Lre~gvd~vtigqYl 300 (334)
||.+|+.++++++++++++.++++.|.
T Consensus 192 et~ed~~~~l~~l~~l~~~~v~~~~~~ 218 (323)
T PRK07094 192 QTLEDLADDILFLKELDLDMIGIGPFI 218 (323)
T ss_pred CCHHHHHHHHHHHHhCCCCeeeeeccc
Confidence 999999999999999999999999876
No 39
>PRK14326 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.89 E-value=8.4e-22 Score=201.64 Aligned_cols=186 Identities=19% Similarity=0.306 Sum_probs=149.4
Q ss_pred eEEEEeecCCCCCCCCCcccCCCCCC-CCCCchhHHHHHHHHHHCCCcEEEEeeecCCCCC-C-chHHHHHHHHHHHHhh
Q 019890 129 TATIMILGDTCTRGCRFCNVKTSRAP-PPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLA-D-QGSGHFAQTVRKLKEL 205 (334)
Q Consensus 129 Tatfm~igdgCtr~C~FC~V~~~r~p-~~ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~-d-~Ga~~fa~lIr~Ik~~ 205 (334)
+.+|++++.||+++|+||++|..+++ .+.++++++++++.+.+.|+++|+|+++|-..+. | .+...|+++++.+.+.
T Consensus 157 ~~a~v~isrGCp~~CsFC~ip~~rG~~rsr~~e~Vv~Ei~~l~~~g~~ei~l~d~n~~~yG~d~~~~~~l~~Ll~~l~~i 236 (502)
T PRK14326 157 YAAWVSISVGCNNTCTFCIVPSLRGKEKDRRPGDILAEVQALVDEGVLEVTLLGQNVNAYGVSFGDRGAFSKLLRACGEI 236 (502)
T ss_pred ceEEEEEccCCCCCCccCceeccCCCcccCCHHHHHHHHHHHHHCCCceEEEEeecccccccCCCCHHHHHHHHHHHHhc
Confidence 67899999999999999999987754 4688999999999999999999999999753221 1 1234688888888654
Q ss_pred CCCC-------------ceeee--ecccc--ccccccchhh-HHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCcceEeec
Q 019890 206 KPNM-------------LIEAL--VAKSG--LNVFAHNIET-VEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTS 267 (334)
Q Consensus 206 ~P~i-------------~vE~L--l~~ag--~dv~~HnlET-v~~l~~~Vr~r~~tye~sL~vL~~ak~~~p~Gl~tkTg 267 (334)
+++ +-|++ +++++ ...+..-+|+ .+++++.|+ |+++.+++++.++.+++..|+ +.+.++
T Consensus 237 -~~l~~ir~~~~~p~~~~~ell~~m~~~g~~~~~l~lglQSgsd~iLk~m~-R~~t~~~~~~~v~~lr~~~~~-i~i~~~ 313 (502)
T PRK14326 237 -DGLERVRFTSPHPAEFTDDVIEAMAETPNVCPQLHMPLQSGSDRVLRAMR-RSYRSERFLGILEKVRAAMPD-AAITTD 313 (502)
T ss_pred -CCccEEEEeccChhhCCHHHHHHHHhcCCcCCcEEeccCCCCHHHHHhcC-CCCCHHHHHHHHHHHHHhCCC-CeEEEE
Confidence 222 11222 44554 3334445787 589999999 899999999999999998886 999999
Q ss_pred eEEec-CCCHHHHHHHHHHHHHcCCcEEeeccCc-CCCCCCCcccccCCHHH
Q 019890 268 IMLGC-GETPDQVVSTMEKVRAAGVDVMTFGQYM-RPSKRHMPVSEYITPEA 317 (334)
Q Consensus 268 iMVGl-GETdEE~~etl~~Lre~gvd~vtigqYl-rP~~~h~~v~~yv~P~~ 317 (334)
+|+|| |||+|||.++++++++++++.+++|+|. +|+.....+...++++.
T Consensus 314 ~IvGfPgET~edf~~Tl~~i~~~~~~~~~~f~~sp~pGT~~~~~~~~v~~~v 365 (502)
T PRK14326 314 IIVGFPGETEEDFQATLDVVREARFSSAFTFQYSKRPGTPAAEMEGQLPKAV 365 (502)
T ss_pred EEEECCCCCHHHHHHHHHHHHHcCCCEEEEEeecCCCCChHHhCcCCCCHHH
Confidence 99999 9999999999999999999999999996 78877666666777554
No 40
>TIGR01578 MiaB-like-B MiaB-like tRNA modifying enzyme, archaeal-type. This clade is a member of a subfamily (TIGR00089) and spans the archaea and eukaryotes. The only archaeal miaB-like genes are in this clade, while eukaryotes have sequences described by this model as well as ones falling within the scope of the MiaB equivalog model.
Probab=99.89 E-value=1e-21 Score=196.67 Aligned_cols=196 Identities=17% Similarity=0.293 Sum_probs=150.0
Q ss_pred eEEEEeecCCCCCCCCCcccCCCCCC-CCCCchhHHHHHHHHHHCCCcEEEEeeecCCCCC-CchHHHHHHHHHHHHhhC
Q 019890 129 TATIMILGDTCTRGCRFCNVKTSRAP-PPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLA-DQGSGHFAQTVRKLKELK 206 (334)
Q Consensus 129 Tatfm~igdgCtr~C~FC~V~~~r~p-~~ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~-d~Ga~~fa~lIr~Ik~~~ 206 (334)
+.+|+.+++||+++|+||++|..+++ ...+++++.++++.+.+.|+++|+|+|+|...+. |.+ ..|.++++.|.+..
T Consensus 133 ~~~~i~isrGC~~~CsfC~ip~~~G~~rsr~~e~Vl~Ei~~l~~~G~~ei~l~g~d~~~yg~d~~-~~l~~Ll~~l~~i~ 211 (420)
T TIGR01578 133 LIEIIPINQGCLGNCSYCITKHARGKLASYPPEKIVEKARQLVAEGCKEIWITSQDTGAYGRDIG-SRLPELLRLITEIP 211 (420)
T ss_pred cEEEEEEccCCCCCCCCCccccCCCCcccCCHHHHHHHHHHHHHCCCeEEEEEeeccccccCCCC-cCHHHHHHHHHhCC
Confidence 78999999999999999999987764 4578999999999999999999999998743331 212 25788888876542
Q ss_pred CCCceeee-----------------ecccc-ccccccchhh-HHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCcceEeec
Q 019890 207 PNMLIEAL-----------------VAKSG-LNVFAHNIET-VEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTS 267 (334)
Q Consensus 207 P~i~vE~L-----------------l~~ag-~dv~~HnlET-v~~l~~~Vr~r~~tye~sL~vL~~ak~~~p~Gl~tkTg 267 (334)
....+.+. +...+ ...+...+|+ .+++++.|+ |+++.++.++.++.+++.+|+ +.+.++
T Consensus 212 ~~~~ir~~~~~p~~~~~~~~~l~~~~~~~~~~~~l~iglQSgsd~iL~~m~-R~~~~~~~~~~i~~i~~~~~~-i~i~~~ 289 (420)
T TIGR01578 212 GEFRLRVGMMNPKNVLEILDELANVYQHEKVYKFLHLPVQSGSDSVLKEMK-REYTVSDFEDIVDKFRERFPD-LTLSTD 289 (420)
T ss_pred CCcEEEEcCCCCCcccccCHHHHHHHhcccccCceEeCCccCCHHHHHhcC-CCCCHHHHHHHHHHHHHhCCC-CEEEee
Confidence 11111111 11111 1223334786 589999999 899999999999999998886 999999
Q ss_pred eEEec-CCCHHHHHHHHHHHHHcCCcEEeeccCc-CCCCCCCcccccCCHHH----HHHHHHHHHHh
Q 019890 268 IMLGC-GETPDQVVSTMEKVRAAGVDVMTFGQYM-RPSKRHMPVSEYITPEA----FERYRALGMEM 328 (334)
Q Consensus 268 iMVGl-GETdEE~~etl~~Lre~gvd~vtigqYl-rP~~~h~~v~~yv~P~~----f~~~~~~a~~~ 328 (334)
+|+|| |||+||+.++++++++++++.++++.|. +|++...... .++++. ...+.+++.++
T Consensus 290 ~IvG~PgET~ed~~~t~~~~~~~~~~~i~~~~~~p~pGT~~~~~~-~v~~~~~~~R~~~l~~~~~~~ 355 (420)
T TIGR01578 290 IIVGFPTETDDDFEETMELLRKYRPEKINITKFSPRPGTPAAKMK-RIPTNIVKKRSKRLTKLYEQV 355 (420)
T ss_pred EEEeCCCCCHHHHHHHHHHHHHhCCCEEEEEEeeCCCCCcccCCC-CCCHHHHHHHHHHHHHHHHHH
Confidence 99999 9999999999999999999999999997 7887766554 377654 44455555443
No 41
>PRK14338 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.88 E-value=2.2e-21 Score=196.38 Aligned_cols=217 Identities=17% Similarity=0.284 Sum_probs=160.9
Q ss_pred CcchHHHHHHHhhcCchhhhhccCCCCCc-ccccCCCCCcceEEEEeecCCCCCCCCCcccCCCCCC-CCCCchhHHHHH
Q 019890 89 GDKYVQIKKKLRELKLHTVCEEAKCPNLG-ECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRAP-PPPDPDEPTNVA 166 (334)
Q Consensus 89 ~~~~~~~~~~l~~~~L~Tvceea~cpni~-ec~~~~~~~~~Tatfm~igdgCtr~C~FC~V~~~r~p-~~ld~~Ep~~~A 166 (334)
+.++.++..++.+. +..+ . -|.+. ..|..+ .+.+|+.|++||+.+|+||++|..+++ ...+++++.+++
T Consensus 123 ~~~~~~i~~~~~~~-~~~~-~---~~~~~~~~~~~~----~~~~~i~I~rGC~~~CsfC~~p~~~G~~rsr~~e~Il~ei 193 (459)
T PRK14338 123 PSAVDEVVALAPNP-IYQL-D---EPALPVADWSHP----PVTVHVPIIYGCNMSCSYCVIPLRRGRERSRPLAEIVEEV 193 (459)
T ss_pred CccHHHHHHHHHhh-cccc-c---cccccccccCCC----ceEEEEEcccCCCCCCCcCCeeccCCCCccCCHHHHHHHH
Confidence 56788888777542 1111 0 12221 123221 378999999999999999999987753 467999999999
Q ss_pred HHHHHCCCcEEEEeeecCCCCCC--chHHHHHHHHHHHHhhCCCC-ceeee--------------eccc--cccccccch
Q 019890 167 EAIASWGLDYVVITSVDRDDLAD--QGSGHFAQTVRKLKELKPNM-LIEAL--------------VAKS--GLNVFAHNI 227 (334)
Q Consensus 167 ~av~~~GlkeVVLTSv~rdDl~d--~Ga~~fa~lIr~Ik~~~P~i-~vE~L--------------l~~a--g~dv~~Hnl 227 (334)
+.+.+.|+++|+|+|++-..+.. .+...|.+++++|++. +++ .+.+. +.+. +...+...+
T Consensus 194 ~~l~~~G~keI~l~g~~~~~yG~d~~~~~~l~~Ll~~l~~~-~gi~~ir~~~~~p~~i~~ell~~l~~~~~~~~~v~lgl 272 (459)
T PRK14338 194 RRIAARGAKEITLLGQIVDSYGHDLPGRPDLADLLEAVHEI-PGLERLRFLTSHPAWMTDRLIHAVARLPKCCPHINLPV 272 (459)
T ss_pred HHHHHCCCeEEEEeeecCCCcccccCChHHHHHHHHHHHhc-CCcceEEEEecChhhcCHHHHHHHhcccccccceecCc
Confidence 99999999999999987432211 0234689999999874 442 22221 3332 344455557
Q ss_pred hh-HHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCcceEeeceEEec-CCCHHHHHHHHHHHHHcCCcEEeeccCc-CCCC
Q 019890 228 ET-VEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC-GETPDQVVSTMEKVRAAGVDVMTFGQYM-RPSK 304 (334)
Q Consensus 228 ET-v~~l~~~Vr~r~~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGl-GETdEE~~etl~~Lre~gvd~vtigqYl-rP~~ 304 (334)
|+ .+++++.|+ |++++++.++.++.+++..|+ +.+.+++|+|| |||+|||.++++++++++++.++++.|. +|..
T Consensus 273 QSgsd~vLk~m~-R~~t~e~~~~~i~~lr~~~pg-i~i~~d~IvG~PgET~ed~~~ti~~l~~l~~~~v~i~~ysp~pGT 350 (459)
T PRK14338 273 QAGDDEVLKRMR-RGYTVARYRELIARIREAIPD-VSLTTDIIVGHPGETEEQFQRTYDLLEEIRFDKVHIAAYSPRPGT 350 (459)
T ss_pred ccCCHHHHHhcc-CCCCHHHHHHHHHHHHHhCCC-CEEEEEEEEECCCCCHHHHHHHHHHHHHcCCCEeEEEecCCCCCC
Confidence 87 489999999 899999999999999998886 99999999999 9999999999999999999999999997 6766
Q ss_pred CCCcccc----cCCHHH
Q 019890 305 RHMPVSE----YITPEA 317 (334)
Q Consensus 305 ~h~~v~~----yv~P~~ 317 (334)
....... ||+++.
T Consensus 351 ~~~~~~~~~~~~v~~~~ 367 (459)
T PRK14338 351 LAAEMEDDPALAVPPEE 367 (459)
T ss_pred hhhhCcCCccCCCCHHH
Confidence 4433333 377765
No 42
>TIGR01125 MiaB-like tRNA modifying enzyme YliG, TIGR01125. This clade spans alpha and gamma proteobacteria, cyano bacteria, deinococcus, porphyromonas, aquifex, helicobacter, campylobacter, thermotoga, chlamydia, streptococcus coelicolor and clostridium, but does not include most other gram positive bacteria, archaea or eukaryotes.
Probab=99.88 E-value=1.2e-21 Score=196.23 Aligned_cols=189 Identities=15% Similarity=0.295 Sum_probs=151.5
Q ss_pred eEEEEeecCCCCCCCCCcccCCCCCC-CCCCchhHHHHHHHHHHCCCcEEEEeeecCCCCCC--chHHHHHHHHHHHHhh
Q 019890 129 TATIMILGDTCTRGCRFCNVKTSRAP-PPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLAD--QGSGHFAQTVRKLKEL 205 (334)
Q Consensus 129 Tatfm~igdgCtr~C~FC~V~~~r~p-~~ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d--~Ga~~fa~lIr~Ik~~ 205 (334)
+.+||.+++||+.+|+||+++..++. ...+++++.++++.+.+.|+++|+++++|...++. .+..++.+++++|.+.
T Consensus 135 ~~~~i~~srGC~~~CsfC~~~~~~G~~r~r~~e~Vv~Ei~~l~~~g~k~i~~~~~d~~~~g~d~~~~~~l~~Ll~~i~~~ 214 (430)
T TIGR01125 135 HYAYLKVAEGCNRRCAFCIIPSIRGKLRSRPIEEILKEAERLVDQGVKEIILIAQDTTAYGKDLYRESKLVDLLEELGKV 214 (430)
T ss_pred eEEEEEEccCCCCCCCcCCeecccCCceecCHHHHHHHHHHHHHCCCcEEEEEeECCCccccCCCCcccHHHHHHHHHhc
Confidence 78899999999999999999976643 45789999999999999999999999987432211 0124688999998764
Q ss_pred CC--CC----------ceeee--ecccc--ccccccchhh-HHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCcceEeece
Q 019890 206 KP--NM----------LIEAL--VAKSG--LNVFAHNIET-VEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSI 268 (334)
Q Consensus 206 ~P--~i----------~vE~L--l~~ag--~dv~~HnlET-v~~l~~~Vr~r~~tye~sL~vL~~ak~~~p~Gl~tkTgi 268 (334)
.. -+ .-|++ ++++| ...+.-.+|+ .+++++.|+ ++++.++.++.++.+++..|+ +.+.+++
T Consensus 215 ~~i~~~r~~~~~p~~~~~ell~~~~~~~~~~~~l~iglES~s~~vLk~m~-k~~~~~~~~~~i~~l~~~~~~-i~i~~~~ 292 (430)
T TIGR01125 215 GGIYWIRMHYLYPDELTDDVIDLMAEGPKVLPYLDIPLQHASDRILKLMR-RPGSGEQQLDFIERLREKCPD-AVLRTTF 292 (430)
T ss_pred CCccEEEEccCCcccCCHHHHHHHhhCCcccCceEeCCCCCCHHHHhhCC-CCCCHHHHHHHHHHHHHhCCC-CeEeEEE
Confidence 21 11 11222 55553 3444445887 589999999 799999999999999998776 8899999
Q ss_pred EEec-CCCHHHHHHHHHHHHHcCCcEEeeccCc-CCCCCCCcccccCCHHHHH
Q 019890 269 MLGC-GETPDQVVSTMEKVRAAGVDVMTFGQYM-RPSKRHMPVSEYITPEAFE 319 (334)
Q Consensus 269 MVGl-GETdEE~~etl~~Lre~gvd~vtigqYl-rP~~~h~~v~~yv~P~~f~ 319 (334)
|+|| |||+|+|.++++++++++++.+++++|. +|+.........+++++..
T Consensus 293 I~G~PgET~e~~~~t~~fl~~~~~~~~~~~~~sp~pGT~~~~~~~~i~~~~~~ 345 (430)
T TIGR01125 293 IVGFPGETEEDFQELLDFVEEGQFDRLGAFTYSPEEGTDAFALPDQVPEEVKE 345 (430)
T ss_pred EEECCCCCHHHHHHHHHHHHhcCCCEEeeeeccCCCCCccccCCCCCCHHHHH
Confidence 9999 9999999999999999999999999997 7888877777778887643
No 43
>TIGR02351 thiH thiazole biosynthesis protein ThiH. Members this protein family are the ThiH protein of thiamine biosynthesis, a homolog of the BioB protein of biotin biosynthesis. Genes for the this protein generally are found in operons with other thiamin biosynthesis genes.
Probab=99.88 E-value=6.3e-22 Score=195.11 Aligned_cols=183 Identities=17% Similarity=0.244 Sum_probs=153.5
Q ss_pred EeecCCCCCCCCCcccCCCCC--CCCCCchhHHHHHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhCCCCc
Q 019890 133 MILGDTCTRGCRFCNVKTSRA--PPPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNML 210 (334)
Q Consensus 133 m~igdgCtr~C~FC~V~~~r~--p~~ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~P~i~ 210 (334)
+.++|.|+++|.||+++.... ...++++|+.+.|+.+.+.|++++.|+|+.. ....+.+++.++|+.|++..|.+.
T Consensus 77 i~~Tn~C~~~C~yC~~s~~~~~~~~~Ls~eEI~~~a~~~~~~Gv~~i~lvgGe~--p~~~~~e~l~eii~~Ik~~~p~i~ 154 (366)
T TIGR02351 77 LYLSNYCSNKCVYCGFSMSNKIKRKKLNEEEIEREIEAIKKSGFKEILLVTGES--EKAAGVEYIAEAIKLAREYFSSLA 154 (366)
T ss_pred eeECccccCCCCcCCCCCCCCCccCcCCHHHHHHHHHHHHhCCCCEEEEeeCCC--CCCCCHHHHHHHHHHHHHhCCccc
Confidence 446999999999999975332 2347999999999999999999999998653 233457889999999999888887
Q ss_pred eeee---------eccccccccccchhhH-HHHHHhhcC--CCCCHHHHHHHHHHHHHhCCCcce-EeeceEEecCCCHH
Q 019890 211 IEAL---------VAKSGLNVFAHNIETV-EELQSAVRD--HRANFKQSLDVLMMAKDYVPAGTL-TKTSIMLGCGETPD 277 (334)
Q Consensus 211 vE~L---------l~~ag~dv~~HnlETv-~~l~~~Vr~--r~~tye~sL~vL~~ak~~~p~Gl~-tkTgiMVGlGETdE 277 (334)
+++. |+++|++.++||+||. +..|+.|++ ++++|+++++.++++++. |+. +++|+|+|+||+.+
T Consensus 155 Iei~~lt~e~~~~Lk~aGv~r~~i~lET~~~~~y~~i~~~g~~h~~~~rl~~i~~a~~a---G~~~v~~g~i~Gl~e~~~ 231 (366)
T TIGR02351 155 IEVQPLNEEEYKKLVEAGLDGVTVYQETYNEKKYKKHHLAGKKKDFRYRLNTPERAAKA---GMRKIGIGALLGLDDWRT 231 (366)
T ss_pred cccccCCHHHHHHHHHcCCCEEEEEeecCCHHHHHhcCcCCCCCCHHHHHHHHHHHHHc---CCCeeceeEEEeCchhHH
Confidence 8774 9999999999999997 999999973 578999999999999996 787 89999999999999
Q ss_pred HHHHHHHHHHHcCC------cEEeeccCcCCCCCCCcccccCCHHHHHHH
Q 019890 278 QVVSTMEKVRAAGV------DVMTFGQYMRPSKRHMPVSEYITPEAFERY 321 (334)
Q Consensus 278 E~~etl~~Lre~gv------d~vtigqYlrP~~~h~~v~~yv~P~~f~~~ 321 (334)
|..++...|++++. +.|.+. .|+|.+..+.-...++|.++.+.
T Consensus 232 d~~~~a~~l~~L~~~~~~~~~sv~~~-~l~P~~g~~~~~~~l~~~~~~~~ 280 (366)
T TIGR02351 232 DAFFTAYHLRYLQKKYWKTEISISVP-RLRPCTNGLKPKVIVTDRELVQI 280 (366)
T ss_pred HHHHHHHHHHHHHHHcCCCCcccccc-ccccCCCCCCCCCcCCHHHHHHH
Confidence 99999999999988 567775 77888765555556778665544
No 44
>TIGR00089 RNA modification enzyme, MiaB family. This subfamily is aparrently a part of a larger superfamily of enzymes utilizing both a 4Fe4S cluster and S-adenosyl methionine (SAM) to initiate radical reactions. MiaB acts on a particular isoprenylated Adenine base of certain tRNAs causing thiolation at an aromatic carbon, and probably also transferring a methyl grouyp from SAM to the thiol. The particular substrate of the three other clades is unknown but may be very closely related.
Probab=99.87 E-value=2.9e-21 Score=193.22 Aligned_cols=186 Identities=17% Similarity=0.354 Sum_probs=149.6
Q ss_pred eEEEEeecCCCCCCCCCcccCCCCCC-CCCCchhHHHHHHHHHHCCCcEEEEeeecCCCC-CCc-hHHHHHHHHHHHHhh
Q 019890 129 TATIMILGDTCTRGCRFCNVKTSRAP-PPPDPDEPTNVAEAIASWGLDYVVITSVDRDDL-ADQ-GSGHFAQTVRKLKEL 205 (334)
Q Consensus 129 Tatfm~igdgCtr~C~FC~V~~~r~p-~~ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl-~d~-Ga~~fa~lIr~Ik~~ 205 (334)
+.+|+.++.||+.+|+||+++..++. ...+++++.++++.+.+.|+++|+|++.|...+ .|. +...|.+++++|++.
T Consensus 139 ~~~~i~~srGC~~~CsfC~~~~~~g~~r~r~~e~Vv~Ei~~l~~~g~~ei~l~~~~~~~yg~d~~~~~~l~~Ll~~l~~~ 218 (429)
T TIGR00089 139 TRAFLKIQEGCDKFCTYCIVPYARGRERSRPPEDILEEVKELVSKGVKEIVLLGQNVGAYGKDLKGETNLADLLRELSKI 218 (429)
T ss_pred eEEEEEHHhCcCCCCCcCceecccCCCCCCCHHHHHHHHHHHHHCCCceEEEEeeccccccCCCCCCcCHHHHHHHHhcC
Confidence 78899999999999999999986653 467899999999999999999999999874322 111 124588999998764
Q ss_pred CCCC---ce----------eee--ecccc--ccccccchhh-HHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCcceEeec
Q 019890 206 KPNM---LI----------EAL--VAKSG--LNVFAHNIET-VEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTS 267 (334)
Q Consensus 206 ~P~i---~v----------E~L--l~~ag--~dv~~HnlET-v~~l~~~Vr~r~~tye~sL~vL~~ak~~~p~Gl~tkTg 267 (334)
+++ .+ +++ +.+++ ...+...+|+ .+++++.|+ |+++.++.++.++.+++..|+ +.+.++
T Consensus 219 -~g~~~i~~~~~~p~~i~~ell~~m~~~~~~~~~l~igiES~s~~vLk~m~-R~~~~~~~~~~i~~lr~~~~~-i~i~~~ 295 (429)
T TIGR00089 219 -DGIERIRFGSSHPDDVTDDLIELIAENPKVCKHLHLPVQSGSDRILKRMN-RKYTREEYLDIVEKIRAKIPD-AAITTD 295 (429)
T ss_pred -CCCCEEEECCCChhhcCHHHHHHHHhCCCccCceeeccccCChHHHHhCC-CCCCHHHHHHHHHHHHHHCCC-CEEEee
Confidence 221 11 111 44553 4555556887 489999999 899999999999999998776 899999
Q ss_pred eEEec-CCCHHHHHHHHHHHHHcCCcEEeeccCc-CCCCCCCcccccCCHHH
Q 019890 268 IMLGC-GETPDQVVSTMEKVRAAGVDVMTFGQYM-RPSKRHMPVSEYITPEA 317 (334)
Q Consensus 268 iMVGl-GETdEE~~etl~~Lre~gvd~vtigqYl-rP~~~h~~v~~yv~P~~ 317 (334)
+|+|| |||+|+|.++++++++++++.+++++|. +|+.....+...++++.
T Consensus 296 ~IvG~PgET~ed~~~tl~~i~~~~~~~~~~~~~sp~pgT~~~~~~~~v~~~~ 347 (429)
T TIGR00089 296 IIVGFPGETEEDFEETLDLVEEVKFDKLHSFIYSPRPGTPAADMKDQVPEEV 347 (429)
T ss_pred EEEECCCCCHHHHHHHHHHHHhcCCCEeeccccCCCCCCchhhCCCCCCHHH
Confidence 99999 9999999999999999999999999997 67776666666677765
No 45
>PRK14325 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.87 E-value=4.5e-21 Score=192.96 Aligned_cols=187 Identities=15% Similarity=0.258 Sum_probs=150.7
Q ss_pred eEEEEeecCCCCCCCCCcccCCCCCC-CCCCchhHHHHHHHHHHCCCcEEEEeeecCCCCCC----chHHHHHHHHHHHH
Q 019890 129 TATIMILGDTCTRGCRFCNVKTSRAP-PPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLAD----QGSGHFAQTVRKLK 203 (334)
Q Consensus 129 Tatfm~igdgCtr~C~FC~V~~~r~p-~~ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d----~Ga~~fa~lIr~Ik 203 (334)
+.+|+.+++||+.+|+||++|..++. ...+++++.++++.+.+.|+++|+|++.|-..+.+ +....|.+++++|.
T Consensus 147 ~~~~i~isrGCp~~CsFC~~p~~~G~~~sr~~e~Iv~Ei~~l~~~g~~ei~l~d~~~~~y~~~~~~~~~~~l~~Ll~~l~ 226 (444)
T PRK14325 147 PSAFVSIMEGCDKYCTFCVVPYTRGEEVSRPVDDVLAEVAQLAEQGVREITLLGQNVNAYRGEGPDGEIADFAELLRLVA 226 (444)
T ss_pred ceEEEEhhhCCCCCCCccccCcccCCcccCCHHHHHHHHHHHHHCCCcEEEEEeeccccccCCCCCCCcchHHHHHHHHH
Confidence 78899999999999999999987653 36889999999999999999999999987432211 11346889999987
Q ss_pred hhCCCC-ceee------------e--ecccc--ccccccchhh-HHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCcceEe
Q 019890 204 ELKPNM-LIEA------------L--VAKSG--LNVFAHNIET-VEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTK 265 (334)
Q Consensus 204 ~~~P~i-~vE~------------L--l~~ag--~dv~~HnlET-v~~l~~~Vr~r~~tye~sL~vL~~ak~~~p~Gl~tk 265 (334)
+. +++ .+.. + +++++ ...+..-+|+ .+++++.|+ |+++.++.++.++.+++..|+ +.+.
T Consensus 227 ~~-~~~~~ir~~~~~p~~~~~ell~~l~~~~~~~~~l~igiqSgs~~vLk~m~-R~~~~~~~~~~i~~lr~~~~g-i~v~ 303 (444)
T PRK14325 227 AI-DGIERIRYTTSHPRDFTDDLIEAYADLPKLVPFLHLPVQSGSDRILKAMN-RGHTALEYKSIIRKLRAARPD-IAIS 303 (444)
T ss_pred hc-CCccEEEEccCCcccCCHHHHHHHHcCCcccCceeccCCcCCHHHHHhCC-CCCCHHHHHHHHHHHHHHCCC-CEEE
Confidence 64 332 1211 1 34443 3445555787 589999999 899999999999999998776 9999
Q ss_pred eceEEec-CCCHHHHHHHHHHHHHcCCcEEeeccCc-CCCCCCCcccccCCHHHH
Q 019890 266 TSIMLGC-GETPDQVVSTMEKVRAAGVDVMTFGQYM-RPSKRHMPVSEYITPEAF 318 (334)
Q Consensus 266 TgiMVGl-GETdEE~~etl~~Lre~gvd~vtigqYl-rP~~~h~~v~~yv~P~~f 318 (334)
+++|+|| |||+++|.++++++++++++.+++++|. +|+.....+...|+++..
T Consensus 304 ~~~IvG~PgET~ed~~~tl~~i~~~~~~~~~~~~~sp~pGT~~~~~~~~v~~~~~ 358 (444)
T PRK14325 304 SDFIVGFPGETDEDFEATMKLIEDVGFDQSFSFIYSPRPGTPAADLPDDVPEEVK 358 (444)
T ss_pred eeEEEECCCCCHHHHHHHHHHHHhcCCCeeeeeeccCCCCCchhhCCCCCCHHHH
Confidence 9999999 9999999999999999999999999997 788777777777887653
No 46
>PRK07360 FO synthase subunit 2; Reviewed
Probab=99.87 E-value=1.8e-21 Score=192.12 Aligned_cols=160 Identities=17% Similarity=0.292 Sum_probs=132.3
Q ss_pred EeecCCCCCCCCCcccCCCCCC---CCCCchhHHHHHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhCCCC
Q 019890 133 MILGDTCTRGCRFCNVKTSRAP---PPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNM 209 (334)
Q Consensus 133 m~igdgCtr~C~FC~V~~~r~p---~~ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~P~i 209 (334)
+.+++.|+.+|.||++....+. ..++++|+.+.|+.+.+.|+++++|||+...++. ..+.+.++|++||+..|++
T Consensus 64 i~~Tn~C~~~C~fC~~~~~~~~~~~y~ls~eeI~~~a~~a~~~G~~~i~l~~G~~p~~~--~~e~~~~~i~~ik~~~~~i 141 (371)
T PRK07360 64 INFTNICEGHCGFCAFRRDEGDHGAFWLTIAEILEKAAEAVKRGATEVCIQGGLHPAAD--SLEFYLEILEAIKEEFPDI 141 (371)
T ss_pred cccchhhhcCCccCCcccCCCCCCCeeCCHHHHHHHHHHHHhCCCCEEEEccCCCCCCC--cHHHHHHHHHHHHHhCCCc
Confidence 4469999999999999865321 2489999999999999999999999998643222 3678999999999988876
Q ss_pred ceee--------------------e--eccccccccccchhhH-----HHHHHhhcCCCCCHHHHHHHHHHHHHhCCCcc
Q 019890 210 LIEA--------------------L--VAKSGLNVFAHNIETV-----EELQSAVRDHRANFKQSLDVLMMAKDYVPAGT 262 (334)
Q Consensus 210 ~vE~--------------------L--l~~ag~dv~~HnlETv-----~~l~~~Vr~r~~tye~sL~vL~~ak~~~p~Gl 262 (334)
.+.. + |+++|+|.|+ ||. +++++.+++...++++++++++.+++. |+
T Consensus 142 ~i~a~s~~ei~~~~~~~G~~~~e~l~~LkeAGld~~~---~t~~e~l~~~vr~~i~p~~~s~~~~l~~i~~a~~~---Gl 215 (371)
T PRK07360 142 HLHAFSPMEVYFAAREDGLSYEEVLKALKDAGLDSMP---GTAAEILVDEVRRIICPEKIKTAEWIEIVKTAHKL---GL 215 (371)
T ss_pred ceeeCCHHHHHHHHhhcCCCHHHHHHHHHHcCCCcCC---CcchhhccHHHHHhhCCCCCCHHHHHHHHHHHHHc---CC
Confidence 6653 1 8999999995 443 455556665456999999999999997 89
Q ss_pred eEeeceEEecCCCHHHHHHHHHHHHHcCCcEEeeccCc
Q 019890 263 LTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYM 300 (334)
Q Consensus 263 ~tkTgiMVGlGETdEE~~etl~~Lre~gvd~vtigqYl 300 (334)
.++||+|+|+|||.+|+++++..|++++++..+|..|+
T Consensus 216 ~~~sg~i~G~gEt~edrv~~l~~lr~l~~~~~g~~~fI 253 (371)
T PRK07360 216 PTTSTMMYGHVETPEHRIDHLLILREIQQETGGITEFV 253 (371)
T ss_pred CceeeEEeeCCCCHHHHHHHHHHHHHhchhhCCeeEEE
Confidence 99999999999999999999999999999996665554
No 47
>PRK06245 cofG FO synthase subunit 1; Reviewed
Probab=99.87 E-value=6.9e-21 Score=184.79 Aligned_cols=191 Identities=18% Similarity=0.244 Sum_probs=138.4
Q ss_pred EEeecCCCCCCCCCcccCCCCC-CCCCCchhHHHHHHHHHHCCCcEEEEeeecCCCCC---------CchHHHHHHHHHH
Q 019890 132 IMILGDTCTRGCRFCNVKTSRA-PPPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLA---------DQGSGHFAQTVRK 201 (334)
Q Consensus 132 fm~igdgCtr~C~FC~V~~~r~-p~~ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~---------d~Ga~~fa~lIr~ 201 (334)
|+.++|+|+.+|+||+++..++ ...++++|+.+.++.+.+.|+++|+|||++..++. ++|...+.+.|++
T Consensus 15 ~i~~Tn~C~~~C~fC~~~~~~~~~~~ls~eei~~~~~~~~~~G~~ei~l~gG~~p~~~~~~~~~~~~~~g~~~~~~~i~~ 94 (336)
T PRK06245 15 FIPLTYECRNRCGYCTFRRDPGQPSLLSPEEVKEILRRGADAGCTEALFTFGEVPDESYERIKEQLAEMGYSSILEYLYD 94 (336)
T ss_pred eeeccccccCCCccCCCcCCCCccCcCCHHHHHHHHHHHHHCCCCEEEEecCCCCccchhhhhhhhhhhhHHHHHHHHHH
Confidence 4679999999999999998664 34689999999999999999999999999764332 1223344555555
Q ss_pred HHh------hCCCCceeee-------eccccccccccchhhH-HHHHHhhcC--CCCCHHHHHHHHHHHHHhCCCcceEe
Q 019890 202 LKE------LKPNMLIEAL-------VAKSGLNVFAHNIETV-EELQSAVRD--HRANFKQSLDVLMMAKDYVPAGTLTK 265 (334)
Q Consensus 202 Ik~------~~P~i~vE~L-------l~~ag~dv~~HnlETv-~~l~~~Vr~--r~~tye~sL~vL~~ak~~~p~Gl~tk 265 (334)
|.+ ..|.+.+..+ +++++.. +.+++|+. +.+++.|+. +...+++.++.++.+++. |+.++
T Consensus 95 i~~~~~~~g~~~~~~~~~lt~e~i~~Lk~ag~~-l~~~~et~~e~l~~~v~~~~~~~~~~~~l~~i~~a~~~---Gi~~~ 170 (336)
T PRK06245 95 LCELALEEGLLPHTNAGILTREEMEKLKEVNAS-MGLMLEQTSPRLLNTVHRGSPGKDPELRLETIENAGKL---KIPFT 170 (336)
T ss_pred HHHHHhhcCCCccccCCCCCHHHHHHHHHhCCC-CCCCccccchhhHHhhccCCCCCCHHHHHHHHHHHHHc---CCcee
Confidence 543 2343333333 7777765 57888985 788876631 466899999999999985 79999
Q ss_pred eceEEecCCCHHHHHHHHHHHHHcC-----CcEEeeccCcCCCCC-CCcccccCCHHHHHHHHHHHHH
Q 019890 266 TSIMLGCGETPDQVVSTMEKVRAAG-----VDVMTFGQYMRPSKR-HMPVSEYITPEAFERYRALGME 327 (334)
Q Consensus 266 TgiMVGlGETdEE~~etl~~Lre~g-----vd~vtigqYlrP~~~-h~~v~~yv~P~~f~~~~~~a~~ 327 (334)
+++|+|+|||++|+.++|..|++++ ++.+.++.|. |.+. -+......+++++...-.+++.
T Consensus 171 ~~~i~G~gEt~ed~~~~l~~l~~l~~~~gg~~~~~~~~f~-P~~~T~~~~~~~~s~~e~l~~ia~~Rl 237 (336)
T PRK06245 171 TGILIGIGETWEDRAESLEAIAELHERYGHIQEVIIQNFS-PKPGIPMENHPEPSLEEMLRVVALARL 237 (336)
T ss_pred eeeeeECCCCHHHHHHHHHHHHHHHHhhCCCcEEecCCCc-CCCCCCcccCCCcCHHHHHHHHHHHHH
Confidence 9999999999999999999999996 6777777665 4332 1222234566555554444443
No 48
>PRK14334 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.87 E-value=4.9e-21 Score=192.76 Aligned_cols=189 Identities=18% Similarity=0.307 Sum_probs=148.7
Q ss_pred ceEEEEeecCCCCCCCCCcccCCCCCC-CCCCchhHHHHHHHHHHCCCcEEEEeeecCCCCC-C-chHHHHHHHHHHHHh
Q 019890 128 ATATIMILGDTCTRGCRFCNVKTSRAP-PPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLA-D-QGSGHFAQTVRKLKE 204 (334)
Q Consensus 128 ~Tatfm~igdgCtr~C~FC~V~~~r~p-~~ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~-d-~Ga~~fa~lIr~Ik~ 204 (334)
...+|+.+++||+.+|+||.+++.+++ ...+++++.++++.+.+.|+++|+|++.+-..+. | .+...+.++++.|.+
T Consensus 137 ~~~~~l~isrGC~~~CsfC~~p~~~g~~~sr~~e~Iv~Ei~~l~~~G~keI~l~g~~~~~yG~d~~~~~~~~~Ll~~l~~ 216 (440)
T PRK14334 137 KLSAHLTIMRGCNHHCTYCIVPTTRGPEVSRHPDLILRELELLKAAGVQEVTLLGQNVNSYGVDQPGFPSFAELLRLVGA 216 (440)
T ss_pred CeEEEEEeccCCCCCCcCCCcchhcCCCccCCHHHHHHHHHHHHHCCCeEEEEEeccccccccCCCCcCCHHHHHHHHHh
Confidence 378999999999999999999987654 3678999999999999999999999997642111 0 011247788888765
Q ss_pred hC-CCCce----------eee--eccc--cccccccchhh-HHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCcceEeece
Q 019890 205 LK-PNMLI----------EAL--VAKS--GLNVFAHNIET-VEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSI 268 (334)
Q Consensus 205 ~~-P~i~v----------E~L--l~~a--g~dv~~HnlET-v~~l~~~Vr~r~~tye~sL~vL~~ak~~~p~Gl~tkTgi 268 (334)
.. +.+.+ +++ +++. |...+.-.+|+ .+++++.|+ |+++.++.++.++.+++..|+ +.+.+++
T Consensus 217 ~~i~~ir~~~~~p~~i~~ell~~l~~~~~g~~~l~igvQSgs~~vLk~m~-R~~~~~~~~~~v~~lr~~~~~-i~i~~d~ 294 (440)
T PRK14334 217 SGIPRVKFTTSHPMNFTDDVIAAMAETPAVCEYIHLPVQSGSDRVLRRMA-REYRREKYLERIAEIREALPD-VVLSTDI 294 (440)
T ss_pred cCCcEEEEccCCcccCCHHHHHHHHhcCcCCCeEEeccccCCHHHHHHhC-CCCCHHHHHHHHHHHHHhCCC-cEEEEeE
Confidence 31 11111 111 4443 35556666887 489999999 899999999999999999887 8899999
Q ss_pred EEec-CCCHHHHHHHHHHHHHcCCcEEeeccCc-CCCCCCCcccccCCHHHH
Q 019890 269 MLGC-GETPDQVVSTMEKVRAAGVDVMTFGQYM-RPSKRHMPVSEYITPEAF 318 (334)
Q Consensus 269 MVGl-GETdEE~~etl~~Lre~gvd~vtigqYl-rP~~~h~~v~~yv~P~~f 318 (334)
|+|| |||++||.++++++++++++.+++|.|. +|+........-+++++-
T Consensus 295 IvG~PgEt~ed~~~tl~~i~~l~~~~i~~f~ysp~pGT~~~~~~~~v~~~~~ 346 (440)
T PRK14334 295 IVGFPGETEEDFQETLSLYDEVGYDSAYMFIYSPRPGTPSYKHFQDLPREVK 346 (440)
T ss_pred EEECCCCCHHHHHHHHHHHHhcCCCEeeeeEeeCCCCChhHhccCCCCHHHH
Confidence 9999 9999999999999999999999999997 687766555566888653
No 49
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=99.87 E-value=7.5e-21 Score=185.62 Aligned_cols=185 Identities=20% Similarity=0.310 Sum_probs=143.7
Q ss_pred EeecCCCCCCCCCcccCCCCCC---CCCCchhHHHHHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhCCCC
Q 019890 133 MILGDTCTRGCRFCNVKTSRAP---PPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNM 209 (334)
Q Consensus 133 m~igdgCtr~C~FC~V~~~r~p---~~ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~P~i 209 (334)
+.++++|+.+|.||+++...+. ..++++|+.+.++.+.++|+++|.|+|++. ++...+.+.++++.|++..|++
T Consensus 43 i~~T~~C~~~C~FC~~~~~~~~~~~y~ls~eeI~e~~~~~~~~G~~~i~l~gG~~---p~~~~~~~~~i~~~Ik~~~~~i 119 (343)
T TIGR03551 43 INFTNVCYGGCGFCAFRKRKGDADAYLLSLEEIAERAAEAWKAGATEVCIQGGIH---PDLDGDFYLDILRAVKEEVPGM 119 (343)
T ss_pred cccccccccCCccCCCccCCCCCCcccCCHHHHHHHHHHHHHCCCCEEEEEeCCC---CCCCHHHHHHHHHHHHHHCCCc
Confidence 5568999999999999764321 358999999999999999999999998753 4456678899999999988876
Q ss_pred ceee--------------------e--ecccccccccc-chhhH-HHHHHhhcCCCCCHHHHHHHHHHHHHhCCCcceEe
Q 019890 210 LIEA--------------------L--VAKSGLNVFAH-NIETV-EELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTK 265 (334)
Q Consensus 210 ~vE~--------------------L--l~~ag~dv~~H-nlETv-~~l~~~Vr~r~~tye~sL~vL~~ak~~~p~Gl~tk 265 (334)
.+.+ + |+++|++.++- ..|+. +++++.+++.+.+++++++.++.+++. |+.++
T Consensus 120 ~~~~~t~~ei~~~~~~~g~~~~e~l~~LkeAGl~~i~~~~~E~~~~~v~~~i~~~~~~~~~~~~~i~~a~~~---Gi~v~ 196 (343)
T TIGR03551 120 HIHAFSPMEVYYGARNSGLSVEEALKRLKEAGLDSMPGTAAEILDDEVRKVICPDKLSTAEWIEIIKTAHKL---GIPTT 196 (343)
T ss_pred eEEecCHHHHHHHHHHcCCCHHHHHHHHHHhCcccccCcchhhcCHHHHHhcCCCCCCHHHHHHHHHHHHHc---CCccc
Confidence 5432 1 89999998862 34664 788889984335999999999999997 89999
Q ss_pred eceEEecCCCHHHHHHHHHHHHHcCCcEEeecc-----CcCCCCCCCcc----cccCCHHHHHHHHHHHH
Q 019890 266 TSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQ-----YMRPSKRHMPV----SEYITPEAFERYRALGM 326 (334)
Q Consensus 266 TgiMVGlGETdEE~~etl~~Lre~gvd~vtigq-----YlrP~~~h~~v----~~yv~P~~f~~~~~~a~ 326 (334)
+++|+|+|||.||+++++.+|++++++..++.. |+.|... +.. ....++ .+.++.+|.
T Consensus 197 s~~i~G~~Et~ed~~~~l~~lr~l~~~~~~~~~~iP~~f~~~gT~-l~~~~~~~~~~~~--~~~lr~iAv 263 (343)
T TIGR03551 197 ATIMYGHVETPEHWVDHLLILREIQEETGGFTEFVPLPFVHYNAP-LYLKGMARPGPTG--REDLKVHAI 263 (343)
T ss_pred ceEEEecCCCHHHHHHHHHHHHHhhHHhCCeeEEEeccccCCCCc-cccccCCCCCCCH--HHHHHHHHH
Confidence 999999999999999999999999998643333 4445443 221 123455 566666664
No 50
>PRK09234 fbiC FO synthase; Reviewed
Probab=99.85 E-value=2.1e-20 Score=200.97 Aligned_cols=189 Identities=17% Similarity=0.194 Sum_probs=148.8
Q ss_pred EEeecCCCCCCCCCcccCCCCCC---CCCCchhHHHHHHHHHHCCCcEEEEeeecCCCCC---------C----chHHHH
Q 019890 132 IMILGDTCTRGCRFCNVKTSRAP---PPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLA---------D----QGSGHF 195 (334)
Q Consensus 132 fm~igdgCtr~C~FC~V~~~r~p---~~ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~---------d----~Ga~~f 195 (334)
|+.++|.|.++|.||++....+. ..++++|+.+.|++.++.|++++++||+.+.++. . ...+++
T Consensus 74 ~In~Tn~C~~~C~YCaF~~~~~~~~~~~ls~eEIl~~a~~~~~~G~~e~l~t~G~~P~~~~~~~~~~l~~~gy~~~~ey~ 153 (843)
T PRK09234 74 FIPLTRLCRDRCHYCTFATVPGKLEAAYLSPDEVLDIARAGAAAGCKEALFTLGDRPEDRWPEAREWLDERGYDSTLDYV 153 (843)
T ss_pred EecCCCCCCCCCCcCCCccCCCCCccccCCHHHHHHHHHHHHHCCCCEEEEecCCCCccccccccccccccccccHHHHH
Confidence 56689999999999999864421 3489999999999999999999999999865432 1 125889
Q ss_pred HHHHHHHHhh---CCCCceeee-------eccccccccccchhh-HHHHHHhhc-----CCCCCHHHHHHHHHHHHHhCC
Q 019890 196 AQTVRKLKEL---KPNMLIEAL-------VAKSGLNVFAHNIET-VEELQSAVR-----DHRANFKQSLDVLMMAKDYVP 259 (334)
Q Consensus 196 a~lIr~Ik~~---~P~i~vE~L-------l~~ag~dv~~HnlET-v~~l~~~Vr-----~r~~tye~sL~vL~~ak~~~p 259 (334)
.++++.|++. .|.+++.++ |+++|++ ++||+|| .+++|+... .+...|+++|++++.|++.
T Consensus 154 ~~~~~~ik~~~gl~p~i~~G~ls~~E~~~Lk~~g~s-~gl~lEt~~~~l~~~~g~~h~~~P~K~~~~RL~ti~~A~~l-- 230 (843)
T PRK09234 154 RAMAIRVLEETGLLPHLNPGVMSWSELARLKPVAPS-MGMMLETTSRRLFEEKGGPHYGSPDKDPAVRLRVLEDAGRL-- 230 (843)
T ss_pred HHHHHHHHHhcCCCceeeeCCCCHHHHHHHHHhcCc-CCCCHHHHHHHHHHhhcccccCCCCCCHHHHHHHHHHHHHc--
Confidence 9999999975 566766666 8889998 7899998 588986422 1466899999999999997
Q ss_pred CcceEeeceEEecCCCHHHHHHHHHHHHHc-----CCcEEeeccCcCCCCCCCcccccCCHHHHHHHHHHHH
Q 019890 260 AGTLTKTSIMLGCGETPDQVVSTMEKVRAA-----GVDVMTFGQYMRPSKRHMPVSEYITPEAFERYRALGM 326 (334)
Q Consensus 260 ~Gl~tkTgiMVGlGETdEE~~etl~~Lre~-----gvd~vtigqYlrP~~~h~~v~~yv~P~~f~~~~~~a~ 326 (334)
|+.++||+|+|+|||.+|++++|..||++ +|+.+.+..|.......|......++++ .++.+|.
T Consensus 231 -Gi~~tsG~L~GiGEt~edRve~L~~LR~Lq~~~g~~~evi~~~F~p~~gT~l~~~~~~s~~e--~Lr~iAv 299 (843)
T PRK09234 231 -SVPFTTGILIGIGETLAERAESLFAIRKLHREYGHIQEVIVQNFRAKPDTAMAGVPDAGLEE--LLATIAV 299 (843)
T ss_pred -CCCccceEEEECCCCHHHHHHHHHHHHHhhHhhCCCcEEeecccccCCCCCCCCCCCCCHHH--HHHHHHH
Confidence 89999999999999999999999999999 6888999878722122233344566644 4555443
No 51
>PRK09613 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=99.85 E-value=2.6e-20 Score=189.18 Aligned_cols=191 Identities=12% Similarity=0.241 Sum_probs=154.5
Q ss_pred eEEEEeecCCCCCCCCCcccCCCCC-C--CCCCchhHHHHHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhh
Q 019890 129 TATIMILGDTCTRGCRFCNVKTSRA-P--PPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKEL 205 (334)
Q Consensus 129 Tatfm~igdgCtr~C~FC~V~~~r~-p--~~ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~ 205 (334)
..+.+.++|.|.++|.||+++..++ . ..++++|+.+.|+++++.|++++.|+|+.. .++.+.+++.++|+.|++.
T Consensus 84 lfapLyiSN~C~n~C~YCgfs~~n~~i~r~~Ls~EEI~~ea~~~~~~G~~~i~LvsGe~--p~~~~~eyi~e~i~~I~~~ 161 (469)
T PRK09613 84 LFAPLYISNYCVNNCVYCGFRRSNKEIKRKKLTQEEIREEVKALEDMGHKRLALVAGED--PPNCDIEYILESIKTIYST 161 (469)
T ss_pred EEEeccccCCCCCCCccCCCccCCCCCCceECCHHHHHHHHHHHHHCCCCEEEEEeCCC--CCCCCHHHHHHHHHHHHHh
Confidence 3445668999999999999986543 1 348999999999999999999999987753 4667789999999999975
Q ss_pred CC------CCceeee---------eccccccccccchhhH-HHHHHhhcC--CCCCHHHHHHHHHHHHHhCCCcce-Eee
Q 019890 206 KP------NMLIEAL---------VAKSGLNVFAHNIETV-EELQSAVRD--HRANFKQSLDVLMMAKDYVPAGTL-TKT 266 (334)
Q Consensus 206 ~P------~i~vE~L---------l~~ag~dv~~HnlETv-~~l~~~Vr~--r~~tye~sL~vL~~ak~~~p~Gl~-tkT 266 (334)
.+ .+.|++- |+++|++.|.+|+||. +..|+++++ ++++|+++++.+++|++. |+. +++
T Consensus 162 ~~~~g~i~~v~inig~lt~eey~~LkeaGv~~~~l~qETY~~ety~~~hp~g~k~~y~~Rl~t~~rA~~a---Gi~~Vg~ 238 (469)
T PRK09613 162 KHGNGEIRRVNVNIAPTTVENYKKLKEAGIGTYQLFQETYHKPTYEKMHPSGPKSDYDWRLTAMDRAMEA---GIDDVGI 238 (469)
T ss_pred ccccCcceeeEEEeecCCHHHHHHHHHcCCCEEEeccccCCHHHHHhcCCCCCCCCHHHHHHHHHHHHHc---CCCeeCe
Confidence 32 2445543 9999999999999995 889999874 468999999999999996 897 999
Q ss_pred ceEEecCCCHHHHHHHHHHHHHc------CCcEEeeccCcCCCCCCCcc--ccc-CCHHHHHHHHHHHH
Q 019890 267 SIMLGCGETPDQVVSTMEKVRAA------GVDVMTFGQYMRPSKRHMPV--SEY-ITPEAFERYRALGM 326 (334)
Q Consensus 267 giMVGlGETdEE~~etl~~Lre~------gvd~vtigqYlrP~~~h~~v--~~y-v~P~~f~~~~~~a~ 326 (334)
|+|+||||+.+|+..++..++.+ |++.|+|. .++|... .|+ ..+ +++++|..+=.+.+
T Consensus 239 G~L~GLge~~~E~~~l~~hl~~L~~~~gvgp~tIsvp-rl~P~~G-tpl~~~~~~vsd~e~lriiA~~R 305 (469)
T PRK09613 239 GVLFGLYDYKFEVLGLLMHAEHLEERFGVGPHTISVP-RLRPADG-SDLENFPYLVSDEDFKKIVAILR 305 (469)
T ss_pred EEEEcCCCCHHHHHHHHHHHHHHHHhhCCCCcccccc-ceecCCC-CCcccCCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999988 67777775 8888754 334 223 78877766654443
No 52
>PRK09234 fbiC FO synthase; Reviewed
Probab=99.84 E-value=5.3e-20 Score=197.82 Aligned_cols=219 Identities=17% Similarity=0.241 Sum_probs=162.1
Q ss_pred chHHHHHHHh--hcCchhhhhccCCCCCcccccCCCCCcceEEEE-----eecCCCCCCCCCcccCCCCC---CCCCCch
Q 019890 91 KYVQIKKKLR--ELKLHTVCEEAKCPNLGECWSGGETGTATATIM-----ILGDTCTRGCRFCNVKTSRA---PPPPDPD 160 (334)
Q Consensus 91 ~~~~~~~~l~--~~~L~Tvceea~cpni~ec~~~~~~~~~Tatfm-----~igdgCtr~C~FC~V~~~r~---p~~ld~~ 160 (334)
...+...++. ...|..+|+-|.=-.. +.+|+ +.+|+ .++|.|..+|+||++...+. ...++++
T Consensus 488 s~~eal~Ll~~~~~~l~~L~~~Ad~iR~-~~~G~------~Vt~vvn~~In~TN~C~~~C~FCafs~~~~~~~~y~Ls~e 560 (843)
T PRK09234 488 TDDEALALFTADGPALEAVCRLADDLRR-DVVGD------DVTYVVNRNINFTNICYTGCRFCAFAQRKTDADAYTLSLD 560 (843)
T ss_pred CHHHHHHHHcCCchhHHHHHHHHHHHHH-HhcCC------eEEEEEeeceecCCCCCCCCcccccccCCCCCCcccCCHH
Confidence 3445555554 3456667766632211 23443 56653 36899999999999986532 2458999
Q ss_pred hHHHHHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhCCCCceeee----------------------eccc
Q 019890 161 EPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEAL----------------------VAKS 218 (334)
Q Consensus 161 Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~P~i~vE~L----------------------l~~a 218 (334)
|+.+.|+.+.+.|+++|+|+|+.. ++....++.++|++||+..|++.|+.+ ++++
T Consensus 561 eI~~~a~ea~~~G~tev~i~gG~~---p~~~~~~y~~lir~IK~~~p~i~i~afsp~Ei~~~a~~~Gl~~~e~l~~LkeA 637 (843)
T PRK09234 561 EVADRAWEAWVAGATEVCMQGGIH---PELPGTGYADLVRAVKARVPSMHVHAFSPMEIVNGAARLGLSIREWLTALREA 637 (843)
T ss_pred HHHHHHHHHHHCCCCEEEEecCCC---CCcCHHHHHHHHHHHHHhCCCeeEEecChHHHHHHHHHcCCCHHHHHHHHHHh
Confidence 999999999999999999998764 344567899999999999998877532 8999
Q ss_pred cccccccch-hh-HHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCcceEeeceEEecCCCHHHHHHHHHHHHHcCCc----
Q 019890 219 GLNVFAHNI-ET-VEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVD---- 292 (334)
Q Consensus 219 g~dv~~Hnl-ET-v~~l~~~Vr~r~~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGlGETdEE~~etl~~Lre~gvd---- 292 (334)
|+|.|++.- |. .+++...++|.+.++++|+++++.|++. |+.++|++|+|+|||.+|+++++..|++++.+
T Consensus 638 GLds~pgt~aeil~d~vr~~i~p~k~~~~~wle~i~~Ah~l---Gi~~~stmm~G~~Et~edrv~hl~~LreLq~~tgGf 714 (843)
T PRK09234 638 GLDTIPGTAAEILDDEVRWVLTKGKLPTAEWIEVVTTAHEV---GLRSSSTMMYGHVDTPRHWVAHLRVLRDIQDRTGGF 714 (843)
T ss_pred CcCccCCCchhhCCHHHHhhcCCCCCCHHHHHHHHHHHHHc---CCCcccceEEcCCCCHHHHHHHHHHHHhcCcccCCe
Confidence 999998743 33 2667777775577899999999999997 89999999999999999999999999999986
Q ss_pred --EEeeccCcCCCCCCCccc----ccCCHHHHHHHHHHHH
Q 019890 293 --VMTFGQYMRPSKRHMPVS----EYITPEAFERYRALGM 326 (334)
Q Consensus 293 --~vtigqYlrP~~~h~~v~----~yv~P~~f~~~~~~a~ 326 (334)
.|++. |+.|... +++. ...++ .+.++.+|.
T Consensus 715 ~~fIPl~-F~~~~tp-l~l~~~~~~~~t~--~e~Lr~iAv 750 (843)
T PRK09234 715 TEFVPLP-FVHQNAP-LYLAGAARPGPTH--RENRAVHAL 750 (843)
T ss_pred eeeeecc-ccCCCCC-cccccCCCCCCCH--HHHHHHHHH
Confidence 44443 5555432 2221 23455 556666554
No 53
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=99.84 E-value=1.3e-19 Score=171.71 Aligned_cols=189 Identities=17% Similarity=0.268 Sum_probs=138.4
Q ss_pred EEEee-cCCCCCCCCCcccCCCCC-----CCCCCchhHHHHHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHh
Q 019890 131 TIMIL-GDTCTRGCRFCNVKTSRA-----PPPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKE 204 (334)
Q Consensus 131 tfm~i-gdgCtr~C~FC~V~~~r~-----p~~ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~ 204 (334)
+.+.+ +++|+.+|.||.++.... ...++++|+.+.++.+++.|++.++|+++..+-.++.-.+.+.++.+.+++
T Consensus 30 ~~~~i~s~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~g~~~~~l~~~g~~~~~~~~~~~~~~i~~~~~~ 109 (296)
T TIGR00433 30 TIMNIKSGGCPEDCKYCSQSSRSKTGLPIERLKKVDEVLEEARKAKAAGATRFCLVASGRGPKDREFMEYVEAMVQIVEE 109 (296)
T ss_pred EEEecccCCCCCCCcCCCCcccCCCCCccccCCCHHHHHHHHHHHHHCCCCEEEEEEecCCCChHHHHHHHHHHHHHHHh
Confidence 34555 999999999999976431 124678999999999999999998665433211111112233333333332
Q ss_pred hCCCCce---------eee--eccccccccccchhhHHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCcceEeeceEEecC
Q 019890 205 LKPNMLI---------EAL--VAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCG 273 (334)
Q Consensus 205 ~~P~i~v---------E~L--l~~ag~dv~~HnlETv~~l~~~Vr~r~~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGlG 273 (334)
.++.+ |.+ ++++|++.+.+++|+.+++|+.++ ++++|+++++.++.+++. |+.+++++|+|+|
T Consensus 110 --~~i~~~~~~g~~~~e~l~~Lk~aG~~~v~i~~E~~~~~~~~i~-~~~s~~~~~~ai~~l~~~---Gi~v~~~~i~Gl~ 183 (296)
T TIGR00433 110 --MGLKTCATLGLLDPEQAKRLKDAGLDYYNHNLDTSQEFYSNII-STHTYDDRVDTLENAKKA---GLKVCSGGIFGLG 183 (296)
T ss_pred --CCCeEEecCCCCCHHHHHHHHHcCCCEEEEcccCCHHHHhhcc-CCCCHHHHHHHHHHHHHc---CCEEEEeEEEeCC
Confidence 12322 112 889999999999998799999999 689999999999999996 7999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCcEEeeccCcCCCCCCCcccccCCHHHHHHHHHHHHH
Q 019890 274 ETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMPVSEYITPEAFERYRALGME 327 (334)
Q Consensus 274 ETdEE~~etl~~Lre~gvd~vtigqYlrP~~~h~~v~~yv~P~~f~~~~~~a~~ 327 (334)
||.+|+.+++++|++++++.+.++.+ .|.+. .++..+-+|...+.++.+|..
T Consensus 184 et~~d~~~~~~~l~~l~~~~i~l~~l-~p~~g-T~l~~~~~~s~~~~~~~ia~~ 235 (296)
T TIGR00433 184 ETVEDRIGLALALANLPPESVPINFL-VKIKG-TPLADNKELSADDALKTIALA 235 (296)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEeeee-EEcCC-CccCCCCCCCHHHHHHHHHHH
Confidence 99999999999999999999988755 45432 345555555556666666653
No 54
>PRK06267 hypothetical protein; Provisional
Probab=99.81 E-value=1.3e-18 Score=170.71 Aligned_cols=187 Identities=17% Similarity=0.252 Sum_probs=136.2
Q ss_pred EEEEeecCCCC--CCCCCcccCCCCCC------CCCCchhHHHHHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHH
Q 019890 130 ATIMILGDTCT--RGCRFCNVKTSRAP------PPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRK 201 (334)
Q Consensus 130 atfm~igdgCt--r~C~FC~V~~~r~p------~~ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~ 201 (334)
.+++.+++.|+ ++|+||+++..+++ ..++++|++++|+.+++.|++.+.|+|+.. +. ...+.++++.
T Consensus 28 ~~~l~~S~~C~l~~~C~FC~~s~~~~~i~~~~~~~~s~eeI~eea~~~~~~Gv~~~~lsgG~~--~~---~~el~~i~e~ 102 (350)
T PRK06267 28 ERALFLGWYCNLKGPCKFCYMSTQKDKIKDPLKARRRVESILAEAILMKRIGWKLEFISGGYG--YT---TEEINDIAEM 102 (350)
T ss_pred EEeeeecCCCcCCCCCcCCCCcccCCccCccccccCCHHHHHHHHHHHHHcCCCEEEEecCCC--CC---HHHHHHHHHH
Confidence 34466899999 99999999874321 257999999999999999999988998863 32 3445566666
Q ss_pred HHhhCCC-Ccee--ee----eccccccccccchhhH-HHHHHhhcCCCCCHHHHHHHHHHHHHhCCCcceEeeceEEecC
Q 019890 202 LKELKPN-MLIE--AL----VAKSGLNVFAHNIETV-EELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCG 273 (334)
Q Consensus 202 Ik~~~P~-i~vE--~L----l~~ag~dv~~HnlETv-~~l~~~Vr~r~~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGlG 273 (334)
|++.... +.+. ++ +....+.-+.+|+||. +++|+.|+ ++++++++++.|+.+++. |+.+++++|+|+|
T Consensus 103 I~~~~~~~~~~s~G~~d~~~~~~~~l~Gv~g~~ET~~~~~~~~i~-~~~s~ed~~~~l~~ak~a---Gi~v~~g~IiGlg 178 (350)
T PRK06267 103 IAYIQGCKQYLNVGIIDFLNINLNEIEGVVGAVETVNPKLHREIC-PGKPLDKIKEMLLKAKDL---GLKTGITIILGLG 178 (350)
T ss_pred HHHhhCCceEeecccCCHHHHhhccccCceeeeecCCHHHHHhhC-CCCCHHHHHHHHHHHHHc---CCeeeeeEEEeCC
Confidence 6543211 1111 11 1112222234789997 89999999 589999999999999996 8999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCcEEeeccCc-CCCCCCCcccccCCHHHHHHHHHHHH
Q 019890 274 ETPDQVVSTMEKVRAAGVDVMTFGQYM-RPSKRHMPVSEYITPEAFERYRALGM 326 (334)
Q Consensus 274 ETdEE~~etl~~Lre~gvd~vtigqYl-rP~~~h~~v~~yv~P~~f~~~~~~a~ 326 (334)
||.+|+.++++.|++++++.++++.|. .|+..-.+ ...+++++...+=.+++
T Consensus 179 Et~ed~~~~l~~l~~l~~d~v~~~~L~P~pGTp~~~-~~~~s~~e~lr~ia~~R 231 (350)
T PRK06267 179 ETEDDIEKLLNLIEELDLDRITFYSLNPQKGTIFEN-KPSVTTLEYMNWVSSVR 231 (350)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEEeeeECCCCcCCC-CCCCCHHHHHHHHHHHH
Confidence 999999999999999999999888665 45443222 23466655555444444
No 55
>COG1060 ThiH Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes [Coenzyme metabolism / General function prediction only]
Probab=99.81 E-value=5.4e-19 Score=174.87 Aligned_cols=188 Identities=18% Similarity=0.280 Sum_probs=147.3
Q ss_pred EEeecCCCCCCCCCcccCCCCCC---CCCCchhHHHHHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhCCC
Q 019890 132 IMILGDTCTRGCRFCNVKTSRAP---PPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPN 208 (334)
Q Consensus 132 fm~igdgCtr~C~FC~V~~~r~p---~~ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~P~ 208 (334)
++.++|.|.++|+||++...++. ..++++|+.++++++.+.|+++|.|+|+.. |+.+..++.++++.||+.+|+
T Consensus 62 ~in~TN~C~~~C~fCaF~~~~~~~~~y~Ls~eeI~~~~~~~~~~G~~Evli~gG~~---p~~~~~y~~~~~~~ik~~~p~ 138 (370)
T COG1060 62 NINYTNICVNDCTFCAFYRKPGDPKAYTLSPEEILEEVREAVKRGITEVLIVGGEH---PELSLEYYEELFRTIKEEFPD 138 (370)
T ss_pred cCCcchhhcCCCCccccccCCCCccccccCHHHHHHHHHHHHHcCCeEEEEecCcC---CCcchHHHHHHHHHHHHhCcc
Confidence 35599999999999999976532 368999999999999999999999999974 555667999999999998888
Q ss_pred Cceeee----------------------eccccccccccchhh--HHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCcceE
Q 019890 209 MLIEAL----------------------VAKSGLNVFAHNIET--VEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLT 264 (334)
Q Consensus 209 i~vE~L----------------------l~~ag~dv~~HnlET--v~~l~~~Vr~r~~tye~sL~vL~~ak~~~p~Gl~t 264 (334)
+.+..+ |+++|+|.+.-.-++ ++++-+.+.+++.++++||++++.|+++ |+.+
T Consensus 139 ~~i~a~s~~ei~~~~~~~~~s~~E~l~~Lk~aGldsmpg~~aeil~e~vr~~~~p~K~~~~~wle~~~~Ah~l---GI~~ 215 (370)
T COG1060 139 LHIHALSAGEILFLAREGGLSYEEVLKRLKEAGLDSMPGGGAEILSEEVRKIHCPPKKSPEEWLEIHERAHRL---GIPT 215 (370)
T ss_pred hhhcccCHHHhHHHHhccCCCHHHHHHHHHHcCCCcCcCcceeechHHHHHhhCCCCCCHHHHHHHHHHHHHc---CCCc
Confidence 766544 889999998876443 2444444555789999999999999997 8999
Q ss_pred eeceEEecCCCHHHHHHHHHHHHHcCCc----EEeeccCcCCCCCC--CcccccCCHHHHHHHHHHHHH
Q 019890 265 KTSIMLGCGETPDQVVSTMEKVRAAGVD----VMTFGQYMRPSKRH--MPVSEYITPEAFERYRALGME 327 (334)
Q Consensus 265 kTgiMVGlGETdEE~~etl~~Lre~gvd----~vtigqYlrP~~~h--~~v~~yv~P~~f~~~~~~a~~ 327 (334)
.+++|+|++||.+|++++|..|++++=. ...|.+=+||.+.. +.+..-.++ .+.++.+|..
T Consensus 216 tatml~Gh~E~~ed~~~hl~~ir~lQ~~~gg~~~fI~~~f~p~~~~~~~~~~~~~~~--~~~l~~iAia 282 (370)
T COG1060 216 TATMLLGHVETREDRIDHLEHIRDLQDETGGFQEFIPLRFRPENGPLPAEVVPEASL--EQDLKAIALA 282 (370)
T ss_pred cceeEEEecCCHHHHHHHHHHHHHHHHHhCCcEEEEcccccCCCCCccccCCCCCCH--HHHHHHHHHH
Confidence 9999999999999999999999988633 33333445665543 333333344 6777777764
No 56
>KOG2900 consensus Biotin synthase [Coenzyme transport and metabolism]
Probab=99.76 E-value=4.2e-19 Score=166.38 Aligned_cols=163 Identities=18% Similarity=0.331 Sum_probs=132.5
Q ss_pred EEEEe-ecCCCCCCCCCcccCCCC--C---CCCCCchhHHHHHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHH
Q 019890 130 ATIMI-LGDTCTRGCRFCNVKTSR--A---PPPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLK 203 (334)
Q Consensus 130 atfm~-igdgCtr~C~FC~V~~~r--~---p~~ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik 203 (334)
-|.|. -..||+.+|+||+++.-. | ..-+..||+.+.|+.+++.|-...++-+-+||-. |-...|.++++.|+
T Consensus 84 CTLlsIKtGGCsEDCkYCaQSSRy~TGvKA~klmk~DeVi~~Ak~AK~~GSTRFCmGaAWRD~~--GRk~~fk~IlE~ik 161 (380)
T KOG2900|consen 84 CTLLSIKTGGCSEDCKYCAQSSRYDTGVKAEKLMKVDEVIKEAKEAKRNGSTRFCMGAAWRDMK--GRKSAFKRILEMIK 161 (380)
T ss_pred eEEEEeecCCcccccchhhhhcccccchhHHHHhhHHHHHHHHHHHHhcCCceeecchhhhhhc--cchhHHHHHHHHHH
Confidence 34443 366999999999998522 1 1246899999999999999999999988888632 23456777777777
Q ss_pred hhCCCCceeee-------------eccccccccccchhhHHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCcceEeeceEE
Q 019890 204 ELKPNMLIEAL-------------VAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIML 270 (334)
Q Consensus 204 ~~~P~i~vE~L-------------l~~ag~dv~~HnlETv~~l~~~Vr~r~~tye~sL~vL~~ak~~~p~Gl~tkTgiMV 270 (334)
+.. ++..|+. |+++|+..||||++|+++.|+.|- .+.+|+++|++|+++++. |+.+|||.|+
T Consensus 162 evr-~MgmEvCvTLGMv~~qQAkeLKdAGLTAYNHNlDTSREyYskvI-tTRtYDdRL~Ti~nvr~a---GikvCsGGIl 236 (380)
T KOG2900|consen 162 EVR-DMGMEVCVTLGMVDQQQAKELKDAGLTAYNHNLDTSREYYSKVI-TTRTYDDRLQTIKNVREA---GIKVCSGGIL 236 (380)
T ss_pred HHH-cCCceeeeeeccccHHHHHHHHhccceecccCccchhhhhcccc-eecchHHHHHHHHHHHHh---cceecccccc
Confidence 753 4556654 899999999999999999999998 589999999999999996 8999999999
Q ss_pred ecCCCHHHHHHHHHHHHHcC--CcEEeeccC
Q 019890 271 GCGETPDQVVSTMEKVRAAG--VDVMTFGQY 299 (334)
Q Consensus 271 GlGETdEE~~etl~~Lre~g--vd~vtigqY 299 (334)
||||.++|.+-.+..|..+. ...|+|+..
T Consensus 237 GLGE~e~DriGlihtLatmp~HPESvPiN~L 267 (380)
T KOG2900|consen 237 GLGESEDDRIGLIHTLATMPPHPESVPINRL 267 (380)
T ss_pred cccccccceeeeeeeeccCCCCCcccccceE
Confidence 99999999999888888775 446666643
No 57
>KOG2492 consensus CDK5 activator-binding protein [Signal transduction mechanisms]
Probab=99.75 E-value=6.9e-18 Score=166.27 Aligned_cols=189 Identities=18% Similarity=0.292 Sum_probs=147.9
Q ss_pred CcceEEEEeecCCCCCCCCCcccCCCCCC-CCCCchhHHHHHHHHHHCCCcEEEEeeecCCCCCC---------------
Q 019890 126 GTATATIMILGDTCTRGCRFCNVKTSRAP-PPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLAD--------------- 189 (334)
Q Consensus 126 ~~~Tatfm~igdgCtr~C~FC~V~~~r~p-~~ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d--------------- 189 (334)
+.++.+|+.|.-||++-|+||+||..||. .+.+.+-|+++.+.+.+.|+|+|.|.|+|...+.|
T Consensus 217 ~~s~tAFvSiMRGCdNMCtyCiVpftrGreRsrpi~siv~ev~~L~~qG~KeVTLLGQNVNSyrD~s~~~~~~a~~~~~~ 296 (552)
T KOG2492|consen 217 SSSTTAFVSIMRGCDNMCTYCIVPFTRGRERSRPIESIVEEVKRLAEQGVKEVTLLGQNVNSYRDNSAVQFSSAVPTNLS 296 (552)
T ss_pred CccchhHHHHHhccccccceEEEeccCCcccCCchHHHHHHHHHHhhcCceeeeeecccccccccchhhhhccCCccccC
Confidence 35688899999999999999999998864 56788999999999999999999999987422211
Q ss_pred ----------chHHHHHHHHHHHHhhCCCCceee------------e-eccccc--cccccc-hhh-HHHHHHhhcCCCC
Q 019890 190 ----------QGSGHFAQTVRKLKELKPNMLIEA------------L-VAKSGL--NVFAHN-IET-VEELQSAVRDHRA 242 (334)
Q Consensus 190 ----------~Ga~~fa~lIr~Ik~~~P~i~vE~------------L-l~~ag~--dv~~Hn-lET-v~~l~~~Vr~r~~ 242 (334)
.|.-.|+.+++.+....|++.+.. | ++..-. +..-|. .+. ..+..+.|+ |++
T Consensus 297 ~GFst~yK~K~gGl~Fa~LLd~vs~~~PemR~RFTSPHPKDfpdevl~li~~rdnickqihlPAqSgds~vLE~mr-Rgy 375 (552)
T KOG2492|consen 297 PGFSTVYKPKQGGLRFAHLLDQVSRADPEMRIRFTSPHPKDFPDEVLELIRDRDNICKQIHLPAQSGDSRVLEIMR-RGY 375 (552)
T ss_pred CCceeeecccCCCccHHHHHHHHhhhCcceEEEecCCCCCCChHHHHHHHHhCcchhheeeccccCCchHHHHHHH-ccC
Confidence 122479999999998888865433 2 322222 222232 121 357888899 899
Q ss_pred CHHHHHHHHHHHHHhCCCcceEeeceEEec-CCCHHHHHHHHHHHHHcCCcEEeeccCc-C-CCCCCCcccccCCHH
Q 019890 243 NFKQSLDVLMMAKDYVPAGTLTKTSIMLGC-GETPDQVVSTMEKVRAAGVDVMTFGQYM-R-PSKRHMPVSEYITPE 316 (334)
Q Consensus 243 tye~sL~vL~~ak~~~p~Gl~tkTgiMVGl-GETdEE~~etl~~Lre~gvd~vtigqYl-r-P~~~h~~v~~yv~P~ 316 (334)
+-+.++++..+++++.|+ +..++++|-|| |||+||.++|+-.|+++|.|++..|.|+ | -+.-|.-...-|+-+
T Consensus 376 sreayl~lv~~Irs~iPg-VglssdfitgfCgeTeedhq~t~sLlrqVgYdv~~lFaysmR~kT~ay~r~~ddvpee 451 (552)
T KOG2492|consen 376 SREAYLELVAHIRSMIPG-VGLSSDFITGFCGETEEDHQYTVSLLRQVGYDVVFLFAYSMREKTRAYHRLKDDVPEE 451 (552)
T ss_pred ChHhhhhHHHHHHhhCCC-CcceeeeEecccCCChHHHHHHHHHHHHhccCeeeeEEeeecccchhhhhhcccccHH
Confidence 999999999999999997 99999999999 9999999999999999999999999996 3 333565555555443
No 58
>smart00729 Elp3 Elongator protein 3, MiaB family, Radical SAM. This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases.
Probab=99.69 E-value=4.4e-16 Score=136.00 Aligned_cols=167 Identities=19% Similarity=0.348 Sum_probs=131.8
Q ss_pred EEEeecCCCCCCCCCcccCCCCC-CCCCCchhHHHHHHHHHHCC-----CcEEEEeeecCCCCCCchHHHHHHHHHHHHh
Q 019890 131 TIMILGDTCTRGCRFCNVKTSRA-PPPPDPDEPTNVAEAIASWG-----LDYVVITSVDRDDLADQGSGHFAQTVRKLKE 204 (334)
Q Consensus 131 tfm~igdgCtr~C~FC~V~~~r~-p~~ld~~Ep~~~A~av~~~G-----lkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~ 204 (334)
.++.++++|+.+|.||.++...+ ....+++++.+.++.+.+.| ++.+.++|+..... ...++.++++.|++
T Consensus 3 ~~i~~t~~C~~~C~yC~~~~~~~~~~~~~~e~i~~~~~~~~~~~~~~~~~~~i~~~gg~~~~~---~~~~~~~~~~~~~~ 79 (216)
T smart00729 3 ALYIITRGCPRRCTFCSFPSARGKLRSRYLEALVREIELLAEKGEKEILVGTVFIGGGTPTLL---SPEQLEELLEAIRE 79 (216)
T ss_pred cEEEecCchhccCCcCCcCccccchhHHHHHHHHHHHHHHHhcccCCcceeEEEECCCCCCCC---CHHHHHHHHHHHHH
Confidence 46778999999999999987432 23457888888888886665 46677878764222 22357788888887
Q ss_pred hCC---CCceeee-------------eccccccccccchhhH-HHHHHhhcCCCCCHHHHHHHHHHHHHhCCCc-ceEee
Q 019890 205 LKP---NMLIEAL-------------VAKSGLNVFAHNIETV-EELQSAVRDHRANFKQSLDVLMMAKDYVPAG-TLTKT 266 (334)
Q Consensus 205 ~~P---~i~vE~L-------------l~~ag~dv~~HnlETv-~~l~~~Vr~r~~tye~sL~vL~~ak~~~p~G-l~tkT 266 (334)
..+ ...+.+. +.++|++.+...+|+. ++++..++ +..++++.++.++.+++. | +.+++
T Consensus 80 ~~~~~~~~~~~~~tn~~~~~~~~~~~l~~~~~~~i~isl~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~---g~~~v~~ 155 (216)
T smart00729 80 ILGLADDVEITIETRPGTLTEELLEALKEAGVNRVSLGVQSGSDEVLKAIN-RGHTVEDVLEAVEKLREA---GPIKVST 155 (216)
T ss_pred hCCCCCCeEEEEEeCcccCCHHHHHHHHHcCCCeEEEecccCCHHHHHHhc-CCCCHHHHHHHHHHHHHh---CCcceEE
Confidence 654 2222221 7888888999999974 88898888 689999999999999997 6 78999
Q ss_pred ceEEec-CCCHHHHHHHHHHHHHcCCcEEeeccCc-CCCC
Q 019890 267 SIMLGC-GETPDQVVSTMEKVRAAGVDVMTFGQYM-RPSK 304 (334)
Q Consensus 267 giMVGl-GETdEE~~etl~~Lre~gvd~vtigqYl-rP~~ 304 (334)
++|+|+ |++.+++.+.+++++++|++.+.+++|+ .|..
T Consensus 156 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~t 195 (216)
T smart00729 156 DLIVGLPGETEEDFEETLKLLKELGPDRVSIFPLSPRPGT 195 (216)
T ss_pred eEEecCCCCCHHHHHHHHHHHHHcCCCeEEeeeeeeCCCC
Confidence 999999 6999999999999999999999999997 4554
No 59
>PRK00955 hypothetical protein; Provisional
Probab=99.67 E-value=1.3e-15 Score=158.93 Aligned_cols=197 Identities=12% Similarity=0.183 Sum_probs=134.0
Q ss_pred eEEEEeecCCCCCCCCCcccCCCCCC--CCCCchhHHHHHHHHHHC-CCcEEE--EeeecCCCCC---------------
Q 019890 129 TATIMILGDTCTRGCRFCNVKTSRAP--PPPDPDEPTNVAEAIASW-GLDYVV--ITSVDRDDLA--------------- 188 (334)
Q Consensus 129 Tatfm~igdgCtr~C~FC~V~~~r~p--~~ld~~Ep~~~A~av~~~-GlkeVV--LTSv~rdDl~--------------- 188 (334)
..+++.+++||..+|+||+|+..+|. .+.++++|+++++.+.+. |++.++ |+|.+-+-+.
T Consensus 292 i~~sI~i~RGC~g~CSFCaIp~~rGr~~rSRs~esIv~Evk~L~~~~gfkg~I~DlgGptan~Yg~~c~~~~~~~~c~~~ 371 (620)
T PRK00955 292 VKFSITSHRGCFGGCSFCAITFHQGRFIQSRSQESILREAKELTEMPDFKGYIHDVGGPTANFRKMACKKQLKCGACKNK 371 (620)
T ss_pred EEEEEEeeCCCCCCCCCCCeecccCCcceecCHHHHHHHHHHHHhccCCeEEEEeCCCCCcccccccccccccccccccc
Confidence 45678899999999999999998865 478999999999999887 898875 3443321110
Q ss_pred -----------CchHHHHHHHHHHHHhhCCCC-c------eee--e-----------ecccccc-ccccchhh-HHHHHH
Q 019890 189 -----------DQGSGHFAQTVRKLKELKPNM-L------IEA--L-----------VAKSGLN-VFAHNIET-VEELQS 235 (334)
Q Consensus 189 -----------d~Ga~~fa~lIr~Ik~~~P~i-~------vE~--L-----------l~~ag~d-v~~HnlET-v~~l~~ 235 (334)
+.....+.+++++|++. |++ . |.. + +.+..+. .+..-+|+ .+++++
T Consensus 372 ~clfp~~c~nl~~d~~~l~~LLr~l~~l-~gvkrv~isSGIR~D~l~~~~~~~~l~eL~~~~vsg~L~IapESgSd~VLk 450 (620)
T PRK00955 372 QCLFPKPCKNLDVDHKEYLELLRKVRKL-PGVKKVFIRSGIRYDYLLHDKNDEFFEELCEHHVSGQLKVAPEHISDRVLK 450 (620)
T ss_pred ccccCccccccCcChHHHHHHHHHHhcc-CCceEEEeecceeccccccCCcHHHHHHHHHHhcCCCceeCcCCCChHHHH
Confidence 11224689999999874 543 1 111 1 1111111 11112575 589999
Q ss_pred hhcCCCCCHHHHHHHHHHHHHhCCC-c--ceEeeceEEec-CCCHHHHHHHHHHHHHcCCcEEeeccCc-CCCCCCCcc-
Q 019890 236 AVRDHRANFKQSLDVLMMAKDYVPA-G--TLTKTSIMLGC-GETPDQVVSTMEKVRAAGVDVMTFGQYM-RPSKRHMPV- 309 (334)
Q Consensus 236 ~Vr~r~~tye~sL~vL~~ak~~~p~-G--l~tkTgiMVGl-GETdEE~~etl~~Lre~gvd~vtigqYl-rP~~~h~~v- 309 (334)
.|+ +. ..+.+.++++++++..++ | ..+.++||+|| |||+|||.++++++++++++.++++.|. +|.+....+
T Consensus 451 ~M~-K~-~~~~~~~f~~~~~~i~~~~G~~~~I~~yfIvGfPGETeEDf~et~eflkel~~~~~qV~~fTP~PGT~At~My 528 (620)
T PRK00955 451 LMG-KP-SREVYDKFVKKFDRINKKLGKKQYLVPYLMSSHPGSTLEDAIELAEYTKDLGYQPEQVQDFYPTPGTLSTTMY 528 (620)
T ss_pred HhC-CC-CHHHHHHHHHHHHHhhhhcCCCccEEEEEEEECCCCCHHHHHHHHHHHHHcCCCcceeeeeecCCCcchhhcc
Confidence 998 44 555555555555544433 2 24889999999 9999999999999999999999999997 676421111
Q ss_pred ----------cccCCHHHHHHHHHHHHHh
Q 019890 310 ----------SEYITPEAFERYRALGMEM 328 (334)
Q Consensus 310 ----------~~yv~P~~f~~~~~~a~~~ 328 (334)
.-||+.+..+++.+.|.-.
T Consensus 529 ytg~dp~~~~~v~v~k~~~ek~~qra~l~ 557 (620)
T PRK00955 529 YTGLDPLTMEPVYVPKTPKEKAMQRALLQ 557 (620)
T ss_pred ccCCCccccCcCCCCCCHHHHHHHHHhhc
Confidence 1366777777777776644
No 60
>PRK01254 hypothetical protein; Provisional
Probab=99.65 E-value=2.6e-15 Score=156.74 Aligned_cols=164 Identities=13% Similarity=0.137 Sum_probs=126.6
Q ss_pred eEEEEeecCCCCCCCCCcccCCCCCC--CCCCchhHHHHHHHHHHC--CCcEEE--EeeecCCCCC----C---------
Q 019890 129 TATIMILGDTCTRGCRFCNVKTSRAP--PPPDPDEPTNVAEAIASW--GLDYVV--ITSVDRDDLA----D--------- 189 (334)
Q Consensus 129 Tatfm~igdgCtr~C~FC~V~~~r~p--~~ld~~Ep~~~A~av~~~--GlkeVV--LTSv~rdDl~----d--------- 189 (334)
..+++.+..||..+|+||+|+..+|. .+.+.++|+++++.+.+. |+++++ |+|++-..+. |
T Consensus 372 i~~sV~i~RGC~g~CSFCaI~~hqGr~irSRS~esIL~Ea~~L~~~~pGfKgii~DLgGptaN~YG~~c~d~~~~~~C~~ 451 (707)
T PRK01254 372 IRFSVNIMRGCFGGCSFCSITEHEGRIIQSRSEESIINEIEAIRDKVPGFTGVISDLGGPTANMYRLRCKSPRAEQTCRR 451 (707)
T ss_pred eEEEEEEccCCCCCCCccccccccCCeeeeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCcccccccccccccccccccc
Confidence 56789999999999999999988865 478999999999999974 999999 8887742221 1
Q ss_pred -------------chHHHHHHHHHHHHhhCCCC-ceeee-----------------ecccccccccc---chhh-HHHHH
Q 019890 190 -------------QGSGHFAQTVRKLKELKPNM-LIEAL-----------------VAKSGLNVFAH---NIET-VEELQ 234 (334)
Q Consensus 190 -------------~Ga~~fa~lIr~Ik~~~P~i-~vE~L-----------------l~~ag~dv~~H---nlET-v~~l~ 234 (334)
..-..+.+|+++|++. |++ .|-+. +.+ ..+..+ -+|. .++++
T Consensus 452 ~~Cl~P~~C~nL~~dh~~l~eLLrkLr~I-pGVKkVrI~SgiR~Dl~l~d~elIeel~~--~hV~g~LkVppEH~Sd~VL 528 (707)
T PRK01254 452 LSCVYPDICPHLDTDHEPTINLYRRARDL-KGIKKILIASGVRYDLAVEDPRYVKELVT--HHVGGYLKIAPEHTEEGPL 528 (707)
T ss_pred ccccCcccccccCCCHHHHHHHHHHHHhC-CCceEEEEEcCCCccccccCHHHHHHHHH--hCCccccccccccCCHHHH
Confidence 1125789999999864 554 22221 111 122211 1564 58899
Q ss_pred HhhcCCC--CCHHHHHHHHHHHHHhCCCcceEeeceEEec-CCCHHHHHHHHHHHHHcCCcEEee
Q 019890 235 SAVRDHR--ANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC-GETPDQVVSTMEKVRAAGVDVMTF 296 (334)
Q Consensus 235 ~~Vr~r~--~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGl-GETdEE~~etl~~Lre~gvd~vti 296 (334)
+.|+ +. ++|++++++++++++..|..+.+.++||+|| |||+|||.+++++|++++++.-.+
T Consensus 529 k~M~-Kp~~~~~e~F~e~f~rirk~~gk~q~LipyfIvGhPGeTeeDf~eLaefLkel~f~~eQV 592 (707)
T PRK01254 529 SKMM-KPGMGSYDRFKELFDKYSKEAGKEQYLIPYFISAHPGTTDEDMVNLALWLKKNRFRLDQV 592 (707)
T ss_pred HHhC-CCCcccHHHHHHHHHHHHHHCCCCeEEEEeEEEECCCCCHHHHHHHHHHHHHhCCCccee
Confidence 9998 55 7899999999999998884488899999999 999999999999999998775444
No 61
>cd01335 Radical_SAM Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster. Mechanistically, they share the transfer of a single electron from the iron-sulfur cluster to SAM, which leads to its reductive cleavage to methionine and a 5'-deoxyadenosyl radical, which, in turn, abstracts a hydrogen from the appropriately positioned carbon atom. Depending on the enzyme, SAM is consumed during this process or it is restored and reused. Radical SAM enzymes catalyze steps in metabolism, DNA repair, the biosynthesis of vitamins and coenzymes, and the biosynthesis of many antibiotics. Examples are biotin synthase (BioB), lipoyl synthase (LipA), pyruvate formate-lyase (PFL), coproporphyrinogen oxidase (HemN), lysine 2,3-aminomutase (LAM), anaerobic ribonucleotide reductase (ARR), and MoaA, an enzyme o
Probab=99.55 E-value=1.5e-13 Score=118.06 Aligned_cols=160 Identities=21% Similarity=0.361 Sum_probs=126.7
Q ss_pred eecCCCCCCCCCcccCCCCCCCCCCc---hhHHHHHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhCCCCc
Q 019890 134 ILGDTCTRGCRFCNVKTSRAPPPPDP---DEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNML 210 (334)
Q Consensus 134 ~igdgCtr~C~FC~V~~~r~p~~ld~---~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~P~i~ 210 (334)
.++++|+.+|.||..+.......... +++...+......+.+.+.+++++-- .. .++.++++++++..+++.
T Consensus 2 ~~~~~C~~~C~fC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ggep~--~~---~~~~~~i~~~~~~~~~~~ 76 (204)
T cd01335 2 ELTRGCNLNCGFCSNPASKGRGPESPPEIEEILDIVLEAKERGVEVVILTGGEPL--LY---PELAELLRRLKKELPGFE 76 (204)
T ss_pred ccCCccCCcCCCCCCCCCCCCCccccccHHHHHHHHHHHHhcCceEEEEeCCcCC--cc---HhHHHHHHHHHhhCCCce
Confidence 35789999999999987553322222 46777777778889999999887642 22 178899999998766655
Q ss_pred eeee-------------eccccccccccchhhH-HHHHHhhcCCCCCHHHHHHHHHHHHHhCCCcceEeeceEEec-CCC
Q 019890 211 IEAL-------------VAKSGLNVFAHNIETV-EELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC-GET 275 (334)
Q Consensus 211 vE~L-------------l~~ag~dv~~HnlETv-~~l~~~Vr~r~~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGl-GET 275 (334)
+.+. +.++|.+.+..++|+. +..+..+.....+++++++.++.+++. |+.+.+.+|+|+ +++
T Consensus 77 ~~i~T~~~~~~~~~~~~l~~~g~~~i~i~le~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~~~~~~i~g~~~~~ 153 (204)
T cd01335 77 ISIETNGTLLTEELLKELKELGLDGVGVSLDSGDEEVADKIRGSGESFKERLEALKELREA---GLGLSTTLLVGLGDED 153 (204)
T ss_pred EEEEcCcccCCHHHHHHHHhCCCceEEEEcccCCHHHHHHHhcCCcCHHHHHHHHHHHHHc---CCCceEEEEEecCCCh
Confidence 5443 6778889999999976 667776652378999999999999986 588999999999 556
Q ss_pred HHHHHHHHHHHHHcC-CcEEeeccCcC
Q 019890 276 PDQVVSTMEKVRAAG-VDVMTFGQYMR 301 (334)
Q Consensus 276 dEE~~etl~~Lre~g-vd~vtigqYlr 301 (334)
.+++.++++.+.+.+ ++.+.+++|..
T Consensus 154 ~~~~~~~~~~l~~~~~~~~~~~~~~~p 180 (204)
T cd01335 154 EEDDLEELELLAEFRSPDRVSLFRLLP 180 (204)
T ss_pred hHHHHHHHHHHHhhcCcchhhhhhhcc
Confidence 699999999999999 99999999873
No 62
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=99.55 E-value=1.5e-13 Score=139.45 Aligned_cols=160 Identities=14% Similarity=0.218 Sum_probs=125.6
Q ss_pred EEeecCCCCCCCCCcccCCC---CCCCCCCchhHHHHHHHHHHC--CCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhC
Q 019890 132 IMILGDTCTRGCRFCNVKTS---RAPPPPDPDEPTNVAEAIASW--GLDYVVITSVDRDDLADQGSGHFAQTVRKLKELK 206 (334)
Q Consensus 132 fm~igdgCtr~C~FC~V~~~---r~p~~ld~~Ep~~~A~av~~~--GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~ 206 (334)
.+..+-||+.+|+||.++.. +.....+++.+.++++.+.+. |++++.+..-+ +. ....++.++++.|++..
T Consensus 199 ~i~tsRGCp~~C~FC~~~~~~~g~~~r~rs~e~V~~Ei~~~~~~~~~~~~i~f~Dd~---f~-~~~~~~~~l~~~l~~~~ 274 (472)
T TIGR03471 199 SLYTGRGCPSKCTFCLWPQTVGGHRYRTRSAESVIEEVKYALENFPEVREFFFDDDT---FT-DDKPRAEEIARKLGPLG 274 (472)
T ss_pred EEEecCCCCCCCCCCCCCccCCCCceEeCCHHHHHHHHHHHHHhcCCCcEEEEeCCC---CC-CCHHHHHHHHHHHhhcC
Confidence 45568999999999998742 212346889999998887764 78998884322 22 23456777778776542
Q ss_pred C--------CCceeee--eccccccccccchhhH-HHHHHhhcCCCCCHHHHHHHHHHHHHhCCCcceEeeceEEec-CC
Q 019890 207 P--------NMLIEAL--VAKSGLNVFAHNIETV-EELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC-GE 274 (334)
Q Consensus 207 P--------~i~vE~L--l~~ag~dv~~HnlETv-~~l~~~Vr~r~~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGl-GE 274 (334)
- +++.|++ ++++|...+...+|+. +++++.|+ ++.+.++.++.++.+++. |+.+..++|+|| ||
T Consensus 275 i~~~~~~~~~~~~e~l~~l~~aG~~~v~iGiES~s~~~L~~~~-K~~~~~~~~~~i~~~~~~---Gi~v~~~~IiGlPge 350 (472)
T TIGR03471 275 VTWSCNARANVDYETLKVMKENGLRLLLVGYESGDQQILKNIK-KGLTVEIARRFTRDCHKL---GIKVHGTFILGLPGE 350 (472)
T ss_pred ceEEEEecCCCCHHHHHHHHHcCCCEEEEcCCCCCHHHHHHhc-CCCCHHHHHHHHHHHHHC---CCeEEEEEEEeCCCC
Confidence 0 1122233 8889999999999984 89999999 789999999999999996 799999999999 99
Q ss_pred CHHHHHHHHHHHHHcCCcEEeeccC
Q 019890 275 TPDQVVSTMEKVRAAGVDVMTFGQY 299 (334)
Q Consensus 275 TdEE~~etl~~Lre~gvd~vtigqY 299 (334)
|.|++.++++++.+++++.+.++.+
T Consensus 351 t~e~~~~ti~~~~~l~~~~~~~~~l 375 (472)
T TIGR03471 351 TRETIRKTIDFAKELNPHTIQVSLA 375 (472)
T ss_pred CHHHHHHHHHHHHhcCCCceeeeec
Confidence 9999999999999999999888654
No 63
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=99.53 E-value=2.2e-13 Score=139.36 Aligned_cols=162 Identities=14% Similarity=0.282 Sum_probs=128.4
Q ss_pred EEEEeecCCCCCCCCCcccCCC-CCCCCCCchhHHHHHHHHH-HCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhCC
Q 019890 130 ATIMILGDTCTRGCRFCNVKTS-RAPPPPDPDEPTNVAEAIA-SWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKP 207 (334)
Q Consensus 130 atfm~igdgCtr~C~FC~V~~~-r~p~~ld~~Ep~~~A~av~-~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~P 207 (334)
.+.+..+.||+.+|+||.++.. ++-...+++.+.++++.+. +.|++++.++.-+ ......++.+++++|.+..|
T Consensus 194 ~~~i~tSRGCp~~C~FC~~~~~~~~~R~rs~e~Vv~Ei~~l~~~~gv~~~~~~Dd~----f~~~~~~~~~l~~~l~~~~~ 269 (497)
T TIGR02026 194 VAVPNFARGCPFTCNFCSQWKFWRRYRHRDPKKFVDEIEWLVRTHGVGFFILADEE----PTINRKKFQEFCEEIIARNP 269 (497)
T ss_pred eeeeeccCCCCCCCCCCCCCCCCceeecCCHHHHHHHHHHHHHHcCCCEEEEEecc----cccCHHHHHHHHHHHHhcCC
Confidence 4456689999999999998753 2223568888888888775 5799999885432 22234578888888876532
Q ss_pred -CCc------e-------eee--eccccccccccchhh-HHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCcceEeeceEE
Q 019890 208 -NML------I-------EAL--VAKSGLNVFAHNIET-VEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIML 270 (334)
Q Consensus 208 -~i~------v-------E~L--l~~ag~dv~~HnlET-v~~l~~~Vr~r~~tye~sL~vL~~ak~~~p~Gl~tkTgiMV 270 (334)
++. + |++ ++++|...+...+|+ .+++++.|+ ++.++++.++.++.+++. |+.+..++|+
T Consensus 270 l~i~w~~~~r~~~i~~d~ell~~l~~aG~~~v~iGiES~~~~~L~~~~-K~~t~~~~~~ai~~l~~~---Gi~~~~~~I~ 345 (497)
T TIGR02026 270 ISVTWGINTRVTDIVRDADILHLYRRAGLVHISLGTEAAAQATLDHFR-KGTTTSTNKEAIRLLRQH---NILSEAQFIT 345 (497)
T ss_pred CCeEEEEecccccccCCHHHHHHHHHhCCcEEEEccccCCHHHHHHhc-CCCCHHHHHHHHHHHHHC---CCcEEEEEEE
Confidence 221 1 122 778899989999998 488999999 789999999999999996 7989999999
Q ss_pred ec-CCCHHHHHHHHHHHHHcCCcEEeeccC
Q 019890 271 GC-GETPDQVVSTMEKVRAAGVDVMTFGQY 299 (334)
Q Consensus 271 Gl-GETdEE~~etl~~Lre~gvd~vtigqY 299 (334)
|+ |||.|++.++++++.++++|.+.++.|
T Consensus 346 G~P~et~e~~~~t~~~~~~l~~~~~~~~~~ 375 (497)
T TIGR02026 346 GFENETDETFEETYRQLLDWDPDQANWLMY 375 (497)
T ss_pred ECCCCCHHHHHHHHHHHHHcCCCceEEEEe
Confidence 99 999999999999999999999988654
No 64
>KOG4355 consensus Predicted Fe-S oxidoreductase [General function prediction only]
Probab=99.52 E-value=1.2e-13 Score=135.91 Aligned_cols=192 Identities=19% Similarity=0.243 Sum_probs=144.6
Q ss_pred EEEEeecCCCCCCCCCcccCCCCCC-CCCCchhHHHHHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhCCC
Q 019890 130 ATIMILGDTCTRGCRFCNVKTSRAP-PPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPN 208 (334)
Q Consensus 130 atfm~igdgCtr~C~FC~V~~~r~p-~~ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~P~ 208 (334)
.-++.|.-+|-..|+||--+..|+- .+.+.++++..++..-+.|+.+|-|||-+.+.+...-...+..++.++.+..|+
T Consensus 188 ieIi~intgclgaCtyckTkharg~l~sy~~dslvervrt~f~egv~eIwltsedTgaygrdig~slp~ll~klv~~iPe 267 (547)
T KOG4355|consen 188 IEIISINTGCLGACTYCKTKHARGLLASYPKDSLVERVRTSFEEGVCEIWLTSEDTGAYGRDIGKSLPKLLWKLVEVIPE 267 (547)
T ss_pred eEEEEeccccccccccccccccccccccCCHHHHHHHHHHHHhcCcEEEEecccccchhhhhhhhhhHHHHHHHHHhcch
Confidence 3467789999999999988888853 467899999999999999999999999764322111123567777777777663
Q ss_pred -------Cceeee---------eccccccccccc---hhh-HHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCcceEeece
Q 019890 209 -------MLIEAL---------VAKSGLNVFAHN---IET-VEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSI 268 (334)
Q Consensus 209 -------i~vE~L---------l~~ag~dv~~Hn---lET-v~~l~~~Vr~r~~tye~sL~vL~~ak~~~p~Gl~tkTgi 268 (334)
++...+ .....+.+|... ++. ++.++-.|+ |.+.-.++-.+...+++..|+ +.+-|+|
T Consensus 268 ~cmlr~gmTnpP~ilehl~e~a~vlrhp~vYsflhvpvqsgsdsvl~emk-reyc~~dfk~Vvd~LterVPg-i~IATDi 345 (547)
T KOG4355|consen 268 SCMLRAGMTNPPYILEHLEEAAFVLRHPRVYSFLHVPVQSGSDSVLTEMK-REYCNFDFKIVVDFLTERVPG-ITIATDI 345 (547)
T ss_pred hhhhhhcCCCCchHHHHHHHHHHHhcCCeEEEEEecccccCchhHHHHHH-HHHhhhhHHHHHHHHHhhCCC-cEEeeee
Confidence 111111 223344444332 343 577788888 778878888899999999996 9999999
Q ss_pred EEec-CCCHHHHHHHHHHHHHcCCcEEeeccCc-CCCCCCCcccccCCHHHHHHHHH
Q 019890 269 MLGC-GETPDQVVSTMEKVRAAGVDVMTFGQYM-RPSKRHMPVSEYITPEAFERYRA 323 (334)
Q Consensus 269 MVGl-GETdEE~~etl~~Lre~gvd~vtigqYl-rP~~~h~~v~~yv~P~~f~~~~~ 323 (334)
|.|| |||+|||.++|..+++-.|-.++|+||. ||+....++.+.=+-+.-++-++
T Consensus 346 IcgFPtETdeDFeeTmeLv~kYKFPslfInQfyPRpGTPAAkmkki~a~~vkkRTk~ 402 (547)
T KOG4355|consen 346 ICGFPTETDEDFEETMELVRKYKFPSLFINQFYPRPGTPAAKMKKIPAVEVKKRTKA 402 (547)
T ss_pred eecCCCCchHHHHHHHHHHHHccCchhhhhhcCCCCCChHHhhhcccHHHHHHHHHH
Confidence 9999 9999999999999999999999999997 99988888776544444444333
No 65
>PRK08207 coproporphyrinogen III oxidase; Provisional
Probab=99.52 E-value=2.6e-13 Score=138.94 Aligned_cols=166 Identities=14% Similarity=0.265 Sum_probs=123.2
Q ss_pred EEEEeecCCCCCCCCCcccCCCC--CCCCCC---chhHHHHHHHH----HHC--CCcEEEEeeecCCCCCCchHHHHHHH
Q 019890 130 ATIMILGDTCTRGCRFCNVKTSR--APPPPD---PDEPTNVAEAI----ASW--GLDYVVITSVDRDDLADQGSGHFAQT 198 (334)
Q Consensus 130 atfm~igdgCtr~C~FC~V~~~r--~p~~ld---~~Ep~~~A~av----~~~--GlkeVVLTSv~rdDl~d~Ga~~fa~l 198 (334)
.-|+-| --|+.+|.||+++... +..... .+.+.++.+.+ ... ++..|.+.|++-- -...+.+.++
T Consensus 165 sLYihI-PFC~~~C~YCsf~s~~~~~~~~~~~~Y~~aL~~EI~~~~~~~~~~~~~v~tIyfGGGTPt---~L~~~~L~~L 240 (488)
T PRK08207 165 SIYIGI-PFCPTRCLYCSFPSYPIKGYKGLVEPYLEALHYEIEEIGKYLKEKGLKITTIYFGGGTPT---SLTAEELERL 240 (488)
T ss_pred EEEEec-CCCCCcCCCCCCccccCCCCcchHHHHHHHHHHHHHHHHhhhcccCCceeEEEEeCCCcc---CCCHHHHHHH
Confidence 344443 4799999999998641 111111 12223333322 222 4567778777632 1235678899
Q ss_pred HHHHHhhCCC------Cceee-----e-------eccccccccccchhhH-HHHHHhhcCCCCCHHHHHHHHHHHHHhCC
Q 019890 199 VRKLKELKPN------MLIEA-----L-------VAKSGLNVFAHNIETV-EELQSAVRDHRANFKQSLDVLMMAKDYVP 259 (334)
Q Consensus 199 Ir~Ik~~~P~------i~vE~-----L-------l~~ag~dv~~HnlETv-~~l~~~Vr~r~~tye~sL~vL~~ak~~~p 259 (334)
++.|++..|+ +++|. + ++++|++.+..++|+. +++++.|. |.+++++.++.++.+++.
T Consensus 241 l~~i~~~f~~~~~~~EiTvE~grPd~it~e~L~~Lk~~Gv~RISIGvQS~~d~vLk~ig-R~ht~e~v~~ai~~ar~~-- 317 (488)
T PRK08207 241 LEEIYENFPDVKNVKEFTVEAGRPDTITEEKLEVLKKYGVDRISINPQTMNDETLKAIG-RHHTVEDIIEKFHLAREM-- 317 (488)
T ss_pred HHHHHHhccccCCceEEEEEcCCCCCCCHHHHHHHHhcCCCeEEEcCCcCCHHHHHHhC-CCCCHHHHHHHHHHHHhC--
Confidence 9988776542 34454 1 8899999999999985 89999998 899999999999999996
Q ss_pred Ccc-eEeeceEEec-CCCHHHHHHHHHHHHHcCCcEEeeccCc-CCC
Q 019890 260 AGT-LTKTSIMLGC-GETPDQVVSTMEKVRAAGVDVMTFGQYM-RPS 303 (334)
Q Consensus 260 ~Gl-~tkTgiMVGl-GETdEE~~etl~~Lre~gvd~vtigqYl-rP~ 303 (334)
|+ .+..++|+|+ |||.+++.++++++.+++++.+++..+. .|.
T Consensus 318 -Gf~~In~DLI~GLPgEt~ed~~~tl~~l~~L~pd~isv~~L~i~~g 363 (488)
T PRK08207 318 -GFDNINMDLIIGLPGEGLEEVKHTLEEIEKLNPESLTVHTLAIKRA 363 (488)
T ss_pred -CCCeEEEEEEeCCCCCCHHHHHHHHHHHHhcCcCEEEEEeceEcCC
Confidence 67 7999999999 9999999999999999999999999884 444
No 66
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=99.52 E-value=2.2e-13 Score=134.38 Aligned_cols=168 Identities=15% Similarity=0.231 Sum_probs=126.4
Q ss_pred eEEEEeecCCCCCCCCCcccCCC--CCC-CCCCchhHHHHHHHHHHC---CCcEEEEeeecCCCCCCchHHHHHHHHHHH
Q 019890 129 TATIMILGDTCTRGCRFCNVKTS--RAP-PPPDPDEPTNVAEAIASW---GLDYVVITSVDRDDLADQGSGHFAQTVRKL 202 (334)
Q Consensus 129 Tatfm~igdgCtr~C~FC~V~~~--r~p-~~ld~~Ep~~~A~av~~~---GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~I 202 (334)
+..|+-|-- |+..|.||.+++. ++. ....++.+.++++.+... +++.|.+.|++-- -.....+.++++.|
T Consensus 2 ~~lYihiPf-C~~~C~yC~~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~i~~i~~gGGtpt---~l~~~~l~~ll~~i 77 (377)
T PRK08599 2 TSAYIHIPF-CEHICYYCDFNKVFIKNQPVDEYLDALIKEMNTYAIRPFDKLKTIYIGGGTPT---ALSAEQLERLLTAI 77 (377)
T ss_pred ceEEEEeCC-cCCCCCCCCCeeeccCccCHHHHHHHHHHHHHHhhhcCCCceeEEEeCCCCcc---cCCHHHHHHHHHHH
Confidence 356777764 9999999998853 211 112355666666655555 4566666665421 12356889999999
Q ss_pred HhhCC-----CCceeee-----------eccccccccccchhhH-HHHHHhhcCCCCCHHHHHHHHHHHHHhCCCcce-E
Q 019890 203 KELKP-----NMLIEAL-----------VAKSGLNVFAHNIETV-EELQSAVRDHRANFKQSLDVLMMAKDYVPAGTL-T 264 (334)
Q Consensus 203 k~~~P-----~i~vE~L-----------l~~ag~dv~~HnlETv-~~l~~~Vr~r~~tye~sL~vL~~ak~~~p~Gl~-t 264 (334)
++..+ .+++|+- ++++|++.+...+|+. +++++.|+ |.+++++.++.++.+++. |+. +
T Consensus 78 ~~~~~~~~~~eit~e~~p~~l~~e~l~~l~~~G~~rvsiGvqS~~~~~l~~l~-r~~~~~~~~~~i~~l~~~---g~~~v 153 (377)
T PRK08599 78 HRNLPLSGLEEFTFEANPGDLTKEKLQVLKDSGVNRISLGVQTFNDELLKKIG-RTHNEEDVYEAIANAKKA---GFDNI 153 (377)
T ss_pred HHhCCCCCCCEEEEEeCCCCCCHHHHHHHHHcCCCEEEEecccCCHHHHHHcC-CCCCHHHHHHHHHHHHHc---CCCcE
Confidence 88642 1334432 7889999999999985 89999999 899999999999999996 564 6
Q ss_pred eeceEEec-CCCHHHHHHHHHHHHHcCCcEEeeccCc-CCCC
Q 019890 265 KTSIMLGC-GETPDQVVSTMEKVRAAGVDVMTFGQYM-RPSK 304 (334)
Q Consensus 265 kTgiMVGl-GETdEE~~etl~~Lre~gvd~vtigqYl-rP~~ 304 (334)
..++|+|+ |||.+++.++++++.+++++.++++++. .|..
T Consensus 154 ~~dli~GlPgqt~~~~~~~l~~~~~l~~~~i~~y~l~~~pgT 195 (377)
T PRK08599 154 SIDLIYALPGQTIEDFKESLAKALALDIPHYSAYSLILEPKT 195 (377)
T ss_pred EEeeecCCCCCCHHHHHHHHHHHHccCCCEEeeeceeecCCC
Confidence 88999999 9999999999999999999999998764 5553
No 67
>PRK05799 coproporphyrinogen III oxidase; Provisional
Probab=99.48 E-value=7.3e-13 Score=130.41 Aligned_cols=161 Identities=14% Similarity=0.230 Sum_probs=118.6
Q ss_pred CCCCCCCCCcccCCCCCCCCCCchhHHHHHHHHHH----CCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhC--CC--
Q 019890 137 DTCTRGCRFCNVKTSRAPPPPDPDEPTNVAEAIAS----WGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELK--PN-- 208 (334)
Q Consensus 137 dgCtr~C~FC~V~~~r~p~~ld~~Ep~~~A~av~~----~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~--P~-- 208 (334)
--|+..|.||.++...+......+.+..+.+.++. .+++.|.+.|++---+ ....+..+++.|++.. ++
T Consensus 11 PfC~~~C~yC~~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~i~~gGGtps~l---~~~~l~~L~~~i~~~~~~~~~e 87 (374)
T PRK05799 11 PFCKQKCLYCDFPSYSGKEDLMMEYIKALSKEIRNSTKNKKIKSIFIGGGTPTYL---SLEALEILKETIKKLNKKEDLE 87 (374)
T ss_pred CCccCCCCCCCCCcccCCcchHHHHHHHHHHHHHhhcCCCceeEEEECCCcccCC---CHHHHHHHHHHHHhCCCCCCCE
Confidence 35999999999986543222222234444444432 3467788877753222 2355667777775521 22
Q ss_pred Cceeee-----------eccccccccccchhhH-HHHHHhhcCCCCCHHHHHHHHHHHHHhCCCcce-EeeceEEec-CC
Q 019890 209 MLIEAL-----------VAKSGLNVFAHNIETV-EELQSAVRDHRANFKQSLDVLMMAKDYVPAGTL-TKTSIMLGC-GE 274 (334)
Q Consensus 209 i~vE~L-----------l~~ag~dv~~HnlETv-~~l~~~Vr~r~~tye~sL~vL~~ak~~~p~Gl~-tkTgiMVGl-GE 274 (334)
+++|+- +.++|++.+...+|+. +++++.+. |.+++++.++.++.+++. |+. +..++|+|+ ||
T Consensus 88 itie~~p~~~t~e~l~~l~~~G~~rvsiGvqS~~d~~L~~l~-R~~~~~~~~~ai~~l~~~---g~~~v~~dli~GlPgq 163 (374)
T PRK05799 88 FTVEGNPGTFTEEKLKILKSMGVNRLSIGLQAWQNSLLKYLG-RIHTFEEFLENYKLARKL---GFNNINVDLMFGLPNQ 163 (374)
T ss_pred EEEEeCCCcCCHHHHHHHHHcCCCEEEEECccCCHHHHHHcC-CCCCHHHHHHHHHHHHHc---CCCcEEEEeecCCCCC
Confidence 344431 7888999999999985 88999998 899999999999999996 564 789999999 99
Q ss_pred CHHHHHHHHHHHHHcCCcEEeeccCc-CCCC
Q 019890 275 TPDQVVSTMEKVRAAGVDVMTFGQYM-RPSK 304 (334)
Q Consensus 275 TdEE~~etl~~Lre~gvd~vtigqYl-rP~~ 304 (334)
|.+++.++++++.++++++++++.+. .|..
T Consensus 164 t~e~~~~~l~~~~~l~~~~is~y~l~~~pgT 194 (374)
T PRK05799 164 TLEDWKETLEKVVELNPEHISCYSLIIEEGT 194 (374)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeccEecCCC
Confidence 99999999999999999999999864 5654
No 68
>PRK05904 coproporphyrinogen III oxidase; Provisional
Probab=99.46 E-value=2.7e-12 Score=126.50 Aligned_cols=185 Identities=9% Similarity=0.094 Sum_probs=130.0
Q ss_pred CCCCCCCCCcccCCCCCCCCC------CchhHHHHHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhCCC--
Q 019890 137 DTCTRGCRFCNVKTSRAPPPP------DPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPN-- 208 (334)
Q Consensus 137 dgCtr~C~FC~V~~~r~p~~l------d~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~P~-- 208 (334)
--|...|.||.+.+.-..... -.+|+.+.++.+....++.|-+-|++---| ..+.+.++++.|++..+.
T Consensus 14 PFC~~kC~yC~f~~~~~~~~~~~~~~~~~~~l~~ei~~~~~~~~~tiy~GGGTPs~L---~~~~l~~ll~~i~~~~~~~~ 90 (353)
T PRK05904 14 PFCQYICTFCDFKRILKTPQTKKIFKDFLKNIKMHIKNFKIKQFKTIYLGGGTPNCL---NDQLLDILLSTIKPYVDNNC 90 (353)
T ss_pred CCccCcCCCCCCeeccCCcccHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCccccC---CHHHHHHHHHHHHHhcCCCC
Confidence 579999999999763111101 133444444333223456666666653222 246788899888876442
Q ss_pred -Cceeee-----------eccccccccccchhhH-HHHHHhhcCCCCCHHHHHHHHHHHHHhCCCcce-EeeceEEec-C
Q 019890 209 -MLIEAL-----------VAKSGLNVFAHNIETV-EELQSAVRDHRANFKQSLDVLMMAKDYVPAGTL-TKTSIMLGC-G 273 (334)
Q Consensus 209 -i~vE~L-----------l~~ag~dv~~HnlETv-~~l~~~Vr~r~~tye~sL~vL~~ak~~~p~Gl~-tkTgiMVGl-G 273 (334)
+++|+- ++++|+..+...+|+. +++.+.|+ |.++.++.++.++.+++. |+. +..++|+|+ |
T Consensus 91 eitiE~nP~~lt~e~l~~lk~~G~nrisiGvQS~~d~vL~~l~-R~~~~~~~~~ai~~lr~~---G~~~v~~dlI~GlPg 166 (353)
T PRK05904 91 EFTIECNPELITQSQINLLKKNKVNRISLGVQSMNNNILKQLN-RTHTIQDSKEAINLLHKN---GIYNISCDFLYCLPI 166 (353)
T ss_pred eEEEEeccCcCCHHHHHHHHHcCCCEEEEecccCCHHHHHHcC-CCCCHHHHHHHHHHHHHc---CCCcEEEEEeecCCC
Confidence 455542 7788999998899975 99999999 899999999999999996 565 899999999 9
Q ss_pred CCHHHHHHHHHHHHHcCCcEEeeccCc-CCCCCCCcccccCCHHHHHHHHHHHHHh
Q 019890 274 ETPDQVVSTMEKVRAAGVDVMTFGQYM-RPSKRHMPVSEYITPEAFERYRALGMEM 328 (334)
Q Consensus 274 ETdEE~~etl~~Lre~gvd~vtigqYl-rP~~~h~~v~~yv~P~~f~~~~~~a~~~ 328 (334)
||.+++.++++++.+++++++.+++|. .|...-.....-+.++...+.-+.+.++
T Consensus 167 qt~e~~~~tl~~~~~l~p~~is~y~L~~~~gT~l~~~~~~~~~~~~~~~~~~~~~~ 222 (353)
T PRK05904 167 LKLKDLDEVFNFILKHKINHISFYSLEIKEGSILKKYHYTIDEDKEAEQLNYIKAK 222 (353)
T ss_pred CCHHHHHHHHHHHHhcCCCEEEEEeeEecCCChHhhcCCCCChHHHHHHHHHHHHH
Confidence 999999999999999999999999885 6765433322224444433333444444
No 69
>PRK09249 coproporphyrinogen III oxidase; Provisional
Probab=99.45 E-value=2e-12 Score=130.90 Aligned_cols=164 Identities=17% Similarity=0.245 Sum_probs=123.5
Q ss_pred eEEEEeecCCCCCCCCCcccCCCCCCC-CCC---chhHHHHHHHHHH-----CCCcEEEEeeecCCCCCCchHHHHHHHH
Q 019890 129 TATIMILGDTCTRGCRFCNVKTSRAPP-PPD---PDEPTNVAEAIAS-----WGLDYVVITSVDRDDLADQGSGHFAQTV 199 (334)
Q Consensus 129 Tatfm~igdgCtr~C~FC~V~~~r~p~-~ld---~~Ep~~~A~av~~-----~GlkeVVLTSv~rdDl~d~Ga~~fa~lI 199 (334)
..-|+-| --|+..|.||.+....+.. ... .+.+.++++.+++ .+++.|.+.|++---+ ....+.+++
T Consensus 50 ~~LYvHI-PFC~~~C~yC~~~~~~~~~~~~~~~y~~~L~~Ei~~~~~~~~~~~~v~~i~~gGGtPs~l---~~~~l~~ll 125 (453)
T PRK09249 50 LSLYVHI-PFCRSLCYYCGCNKIITRDHEKADPYLDALEKEIALVAALLGPGRPVSQLHWGGGTPTFL---SPEQLRRLM 125 (453)
T ss_pred eEEEEEe-CCccccCCCCCCcccCCCCcchHHHHHHHHHHHHHHHHHHhCCCCceEEEEECCcccccC---CHHHHHHHH
Confidence 3445544 6799999999987643211 122 2333334333322 3578888888874222 246788999
Q ss_pred HHHHhhCC---C--Cceeee-----------eccccccccccchhhH-HHHHHhhcCCCCCHHHHHHHHHHHHHhCCCcc
Q 019890 200 RKLKELKP---N--MLIEAL-----------VAKSGLNVFAHNIETV-EELQSAVRDHRANFKQSLDVLMMAKDYVPAGT 262 (334)
Q Consensus 200 r~Ik~~~P---~--i~vE~L-----------l~~ag~dv~~HnlETv-~~l~~~Vr~r~~tye~sL~vL~~ak~~~p~Gl 262 (334)
+.|++..+ + +++|+- ++++|...+...+|+. +++++.++ +.+++++.++.++.+++. |+
T Consensus 126 ~~l~~~~~~~~~~e~tie~np~~lt~e~l~~l~~aG~~risiGvqS~~~~~L~~l~-r~~~~~~~~~ai~~l~~~---G~ 201 (453)
T PRK09249 126 ALLREHFNFAPDAEISIEIDPRELDLEMLDALRELGFNRLSLGVQDFDPEVQKAVN-RIQPFEFTFALVEAAREL---GF 201 (453)
T ss_pred HHHHHhCCCCCCCEEEEEecCCcCCHHHHHHHHHcCCCEEEECCCCCCHHHHHHhC-CCCCHHHHHHHHHHHHHc---CC
Confidence 99887643 2 333332 7889999999999985 88999999 899999999999999996 67
Q ss_pred -eEeeceEEec-CCCHHHHHHHHHHHHHcCCcEEeeccCc
Q 019890 263 -LTKTSIMLGC-GETPDQVVSTMEKVRAAGVDVMTFGQYM 300 (334)
Q Consensus 263 -~tkTgiMVGl-GETdEE~~etl~~Lre~gvd~vtigqYl 300 (334)
.+..++|+|+ |||.+++.++++++.+++++.+.+.+|.
T Consensus 202 ~~v~~dli~GlPgqt~e~~~~~l~~~~~l~~~~i~~y~l~ 241 (453)
T PRK09249 202 TSINIDLIYGLPKQTPESFARTLEKVLELRPDRLAVFNYA 241 (453)
T ss_pred CcEEEEEEccCCCCCHHHHHHHHHHHHhcCCCEEEEccCc
Confidence 6899999999 9999999999999999999999999886
No 70
>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase. This model represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. Several species, including E. coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterized protein.
Probab=99.45 E-value=2.2e-12 Score=130.67 Aligned_cols=193 Identities=16% Similarity=0.236 Sum_probs=135.0
Q ss_pred EEEEeecCCCCCCCCCcccCCCCCC-CCCC---chhHHHHHHHHHH-----CCCcEEEEeeecCCCCCCchHHHHHHHHH
Q 019890 130 ATIMILGDTCTRGCRFCNVKTSRAP-PPPD---PDEPTNVAEAIAS-----WGLDYVVITSVDRDDLADQGSGHFAQTVR 200 (334)
Q Consensus 130 atfm~igdgCtr~C~FC~V~~~r~p-~~ld---~~Ep~~~A~av~~-----~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr 200 (334)
.-|+-| --|+..|.||.+.+..+. .... .+.+.++.+.+.. .+++.|.+.|++---+ ...++.++++
T Consensus 51 ~lYiHi-PFC~~~C~yC~~~~~~~~~~~~~~~y~~~L~~Ei~~~~~~~~~~~~v~~I~fgGGtP~~l---~~~~l~~ll~ 126 (455)
T TIGR00538 51 SLYVHI-PFCHKACYFCGCNVIITRQKHKADPYLDALEKEIALVAPLFDGNRHVSQLHWGGGTPTYL---SPEQISRLMK 126 (455)
T ss_pred EEEEEe-CCccCcCCCCCCCccCCCCcchHHHHHHHHHHHHHHHHHhcCCCCceEEEEECCCCcCCC---CHHHHHHHHH
Confidence 344433 579999999999864321 1222 3344444443322 3688888988863222 3567889999
Q ss_pred HHHhhCC---C--Cceeee-----------eccccccccccchhhH-HHHHHhhcCCCCCHHHHHHHHHHHHHhCCCcce
Q 019890 201 KLKELKP---N--MLIEAL-----------VAKSGLNVFAHNIETV-EELQSAVRDHRANFKQSLDVLMMAKDYVPAGTL 263 (334)
Q Consensus 201 ~Ik~~~P---~--i~vE~L-----------l~~ag~dv~~HnlETv-~~l~~~Vr~r~~tye~sL~vL~~ak~~~p~Gl~ 263 (334)
.|++..| + +++|+- ++++|+..+.-.+|+. +++++.|+ +.+++++.++.++.+++. |+.
T Consensus 127 ~i~~~~~~~~~~eitie~np~~l~~e~l~~lk~~G~~risiGvqS~~~~~l~~l~-r~~~~~~~~~ai~~l~~~---G~~ 202 (455)
T TIGR00538 127 LIRENFPFNADAEISIEIDPRYITKDVIDALRDEGFNRLSFGVQDFNKEVQQAVN-RIQPEEMIFELMNHAREA---GFT 202 (455)
T ss_pred HHHHhCCCCCCCeEEEEeccCcCCHHHHHHHHHcCCCEEEEcCCCCCHHHHHHhC-CCCCHHHHHHHHHHHHhc---CCC
Confidence 9987543 2 344431 8888999999999985 88999999 789999999999999996 664
Q ss_pred -EeeceEEec-CCCHHHHHHHHHHHHHcCCcEEeeccCc-CCCCCCC--cccc--cCCHHHHHHHHHHHHHhhc
Q 019890 264 -TKTSIMLGC-GETPDQVVSTMEKVRAAGVDVMTFGQYM-RPSKRHM--PVSE--YITPEAFERYRALGMEMVS 330 (334)
Q Consensus 264 -tkTgiMVGl-GETdEE~~etl~~Lre~gvd~vtigqYl-rP~~~h~--~v~~--yv~P~~f~~~~~~a~~~~~ 330 (334)
+..++|+|+ |||.+++.++++++.+++++.++++.|. .|..... .+.+ ..++++..++-+.+.+...
T Consensus 203 ~v~~dli~GlPgqt~e~~~~tl~~~~~l~~~~is~y~L~~~p~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~L~ 276 (455)
T TIGR00538 203 SINIDLIYGLPKQTKESFAKTLEKVAELNPDRLAVFNYAHVPWVKPAQRKIPEAALPSAEEKLDILQETIAFLT 276 (455)
T ss_pred cEEEeEEeeCCCCCHHHHHHHHHHHHhcCCCEEEEecCccccchhHHHhcccccCCCCHHHHHHHHHHHHHHHH
Confidence 789999999 9999999999999999999999999884 4432100 1122 3345655544445554433
No 71
>PRK05660 HemN family oxidoreductase; Provisional
Probab=99.45 E-value=3.8e-12 Score=126.19 Aligned_cols=161 Identities=12% Similarity=0.238 Sum_probs=123.3
Q ss_pred CCCCCCCCCcccCCCCCCCCCCchh-HHHHHHHHH-------HCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhCC-
Q 019890 137 DTCTRGCRFCNVKTSRAPPPPDPDE-PTNVAEAIA-------SWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKP- 207 (334)
Q Consensus 137 dgCtr~C~FC~V~~~r~p~~ld~~E-p~~~A~av~-------~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~P- 207 (334)
--|...|.||.+.+.......+.++ +....+.+. ..+++.|.+.|++---| ..+.+.++++.|++..|
T Consensus 14 PFC~~~C~yC~f~~~~~~~~~~~~~Y~~~l~~Ei~~~~~~~~~~~v~ti~~GGGtPs~l---~~~~l~~ll~~l~~~~~~ 90 (378)
T PRK05660 14 PWCVQKCPYCDFNSHALKGEVPEDEYVDHLLADLDADLPLVQGREVHSIFIGGGTPSLF---SAEAIQRLLDGVRARLPF 90 (378)
T ss_pred CCccCcCCCCCCeecCCCCcCCHHHHHHHHHHHHHHHhHhccCCceeEEEeCCCccccC---CHHHHHHHHHHHHHhCCC
Confidence 4699999999987643112222233 222332222 24688889988874322 25678999999987653
Q ss_pred ----CCceeee-----------eccccccccccchhhH-HHHHHhhcCCCCCHHHHHHHHHHHHHhCCCcce-EeeceEE
Q 019890 208 ----NMLIEAL-----------VAKSGLNVFAHNIETV-EELQSAVRDHRANFKQSLDVLMMAKDYVPAGTL-TKTSIML 270 (334)
Q Consensus 208 ----~i~vE~L-----------l~~ag~dv~~HnlETv-~~l~~~Vr~r~~tye~sL~vL~~ak~~~p~Gl~-tkTgiMV 270 (334)
.+++|+- ++++|++.+...+|+. +++++.|+ |.+++++.++.++.+++. |+. +..++|+
T Consensus 91 ~~~~eit~e~np~~l~~e~l~~Lk~~Gv~risiGvqS~~~~~L~~l~-r~~~~~~~~~ai~~~~~~---G~~~v~~dli~ 166 (378)
T PRK05660 91 APDAEITMEANPGTVEADRFVGYQRAGVNRISIGVQSFSEEKLKRLG-RIHGPDEAKRAAKLAQGL---GLRSFNLDLMH 166 (378)
T ss_pred CCCcEEEEEeCcCcCCHHHHHHHHHcCCCEEEeccCcCCHHHHHHhC-CCCCHHHHHHHHHHHHHc---CCCeEEEEeec
Confidence 2444542 8899999999999985 89999999 899999999999999996 664 6899999
Q ss_pred ec-CCCHHHHHHHHHHHHHcCCcEEeeccCc-CCCC
Q 019890 271 GC-GETPDQVVSTMEKVRAAGVDVMTFGQYM-RPSK 304 (334)
Q Consensus 271 Gl-GETdEE~~etl~~Lre~gvd~vtigqYl-rP~~ 304 (334)
|+ |||.+++.++++.+.+++++++.+.++. .|..
T Consensus 167 Glpgqt~~~~~~~l~~~~~l~p~~is~y~l~~~~gT 202 (378)
T PRK05660 167 GLPDQSLEEALDDLRQAIALNPPHLSWYQLTIEPNT 202 (378)
T ss_pred CCCCCCHHHHHHHHHHHHhcCCCeEEeeccEeccCC
Confidence 99 9999999999999999999999999885 5653
No 72
>TIGR01212 radical SAM protein, TIGR01212 family. This uncharacterized protein family shows significant similarity to TIGR01211, a longer protein that is a histone acetyltransferase at its C-terminus and is a subunit of RNA polymerase II (in yeast). This family lacks the GNAT acetyltransferase domain.
Probab=99.44 E-value=2.8e-12 Score=123.76 Aligned_cols=154 Identities=12% Similarity=0.146 Sum_probs=110.7
Q ss_pred CCCCCcccCCCCCCCC----CCchhHHHHH----HHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhCCC---C
Q 019890 141 RGCRFCNVKTSRAPPP----PDPDEPTNVA----EAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPN---M 209 (334)
Q Consensus 141 r~C~FC~V~~~r~p~~----ld~~Ep~~~A----~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~P~---i 209 (334)
.+|.||+...+. +.. .+.+++.+.. +...+.+.--+-+.|++-- -...+.+.++++.|++ .|. +
T Consensus 38 ~gC~FC~~~~~~-~~~~~~~~~~~~i~~qi~~~~~~~~~~~~~~iyf~ggt~t---~l~~~~L~~l~~~i~~-~~~~~~i 112 (302)
T TIGR01212 38 GGCTFCNDASRP-IFADEYTQARIPIKEQIKKQMKKYKKDKKFIAYFQAYTNT---YAPVEVLKEMYEQALS-YDDVVGL 112 (302)
T ss_pred CCcccCCCCCCc-cccccccccCCCHHHHHHHHHHHhhccCEEEEEEECCCcC---CCCHHHHHHHHHHHhC-CCCEEEE
Confidence 469999876533 211 2333443333 3333333222666776621 2235788999999987 454 2
Q ss_pred ceeee--------------ecccccc-ccccchhhH-HHHHHhhcCCCCCHHHHHHHHHHHHHhCCCcceEeeceEEec-
Q 019890 210 LIEAL--------------VAKSGLN-VFAHNIETV-EELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC- 272 (334)
Q Consensus 210 ~vE~L--------------l~~ag~d-v~~HnlETv-~~l~~~Vr~r~~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGl- 272 (334)
+++.- +.++|.+ .+...+|+. ++.++.|+ +++++++.++.++.+++. |+.+++++|+|+
T Consensus 113 si~trpd~l~~e~l~~L~~l~~~G~~~~i~lGlQS~~d~~L~~i~-Rg~t~~~~~~ai~~l~~~---gi~v~~~lI~GlP 188 (302)
T TIGR01212 113 SVGTRPDCVPDEVLDLLAEYVERGYEVWVELGLQTAHDKTLKKIN-RGHDFACYVDAVKRARKR---GIKVCSHVILGLP 188 (302)
T ss_pred EEEecCCcCCHHHHHHHHHhhhCCceEEEEEccCcCCHHHHHHHc-CcChHHHHHHHHHHHHHc---CCEEEEeEEECCC
Confidence 33221 4456774 477789985 88999999 899999999999999996 799999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEeeccCc-CCC
Q 019890 273 GETPDQVVSTMEKVRAAGVDVMTFGQYM-RPS 303 (334)
Q Consensus 273 GETdEE~~etl~~Lre~gvd~vtigqYl-rP~ 303 (334)
|||.|++.++++++.++++|.+.++++. .|.
T Consensus 189 get~e~~~~t~~~l~~l~~d~i~i~~l~~~pg 220 (302)
T TIGR01212 189 GEDREEMMETAKIVSLLDVDGIKIHPLHVVKG 220 (302)
T ss_pred CCCHHHHHHHHHHHHhcCCCEEEEEEEEecCC
Confidence 9999999999999999999999998774 454
No 73
>PF04055 Radical_SAM: Radical SAM superfamily; InterPro: IPR007197 Radical SAM proteins catalyze diverse reactions, including unusual methylations, isomerization, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation. Evidence exists that these proteins generate a radical species by reductive cleavage of S:-adenosylmethionine (SAM) through an unusual Fe-S centre [, ].; GO: 0003824 catalytic activity, 0051536 iron-sulfur cluster binding; PDB: 2A5H_D 3T7V_A 3C8F_A 3CB8_A 2FB2_A 2FB3_A 3CIX_A 3IIX_A 3IIZ_A 3CIW_A ....
Probab=99.44 E-value=4.2e-13 Score=112.73 Aligned_cols=144 Identities=19% Similarity=0.350 Sum_probs=107.7
Q ss_pred eecCCCCCCCCCcccCCC--CC-CCCCCchhHHHHHHHH-HHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhC-CC
Q 019890 134 ILGDTCTRGCRFCNVKTS--RA-PPPPDPDEPTNVAEAI-ASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELK-PN 208 (334)
Q Consensus 134 ~igdgCtr~C~FC~V~~~--r~-p~~ld~~Ep~~~A~av-~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~-P~ 208 (334)
.++++|+.+|.||..+.. .. +..++++++.+.++.+ ...|.+.+.++|++....+ ++.+.+..+.+.. ++
T Consensus 2 ~~~~~C~~~C~fC~~~~~~~~~~~~~~~~e~i~~~~~~~~~~~~~~~i~~~~gep~~~~-----~~~~~~~~~~~~~~~~ 76 (166)
T PF04055_consen 2 ETTRGCNLNCSFCYYPRSRRKNKPREMSPEEILEEIKELKQDKGVKEIFFGGGEPTLHP-----DFIELLELLRKIKKRG 76 (166)
T ss_dssp EEESEESS--TTTSTTTTCCTCGCEECHHHHHHHHHHHHHHHTTHEEEEEESSTGGGSC-----HHHHHHHHHHHCTCTT
T ss_pred EECcCcCccCCCCCCCccCCCcccccCCHHHHHHHHHHHhHhcCCcEEEEeecCCCcch-----hHHHHHHHHHHhhccc
Confidence 467899999999999974 21 3457899999999999 6888788888877632222 3455555555542 33
Q ss_pred Cceeee-------------eccccccccccchhhH-HH-HHHhhcCCCCCHHHHHHHHHHHHHhCCCcceEeeceEEec-
Q 019890 209 MLIEAL-------------VAKSGLNVFAHNIETV-EE-LQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC- 272 (334)
Q Consensus 209 i~vE~L-------------l~~ag~dv~~HnlETv-~~-l~~~Vr~r~~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGl- 272 (334)
+.+.+. +.+.+.+.+...+|+. +. +.+.++ +..++++.++.++++++. |+.....+|+|+
T Consensus 77 ~~i~~~t~~~~~~~~~l~~l~~~~~~~i~~~l~s~~~~~~~~~~~-~~~~~~~~~~~l~~l~~~---g~~~~~~~i~~~~ 152 (166)
T PF04055_consen 77 IRISINTNGTLLDEELLDELKKLGVDRIRISLESLDEESVLRIIN-RGKSFERVLEALERLKEA---GIPRVIIFIVGLP 152 (166)
T ss_dssp EEEEEEEESTTHCHHHHHHHHHTTCSEEEEEEBSSSHHHHHHHHS-STSHHHHHHHHHHHHHHT---TSETEEEEEEEBT
T ss_pred cceeeeccccchhHHHHHHHHhcCccEEecccccCCHHHhhhhhc-CCCCHHHHHHHHHHHHHc---CCCcEEEEEEEeC
Confidence 333332 6777888899999986 66 888887 689999999999999996 665467888888
Q ss_pred CCCHHHHHHHHHHH
Q 019890 273 GETPDQVVSTMEKV 286 (334)
Q Consensus 273 GETdEE~~etl~~L 286 (334)
|||++|+.+++++|
T Consensus 153 ~~~~~e~~~~~~~i 166 (166)
T PF04055_consen 153 GENDEEIEETIRFI 166 (166)
T ss_dssp TTSHHHHHHHHHHH
T ss_pred CCCHHHHHHHhCcC
Confidence 99999999999986
No 74
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=99.41 E-value=4.5e-12 Score=128.40 Aligned_cols=164 Identities=15% Similarity=0.199 Sum_probs=122.7
Q ss_pred eEEEEeecCCCCCCCCCcccCCCCC-CCCCC---chhHHHHHHHHHH-----CCCcEEEEeeecCCCCCCchHHHHHHHH
Q 019890 129 TATIMILGDTCTRGCRFCNVKTSRA-PPPPD---PDEPTNVAEAIAS-----WGLDYVVITSVDRDDLADQGSGHFAQTV 199 (334)
Q Consensus 129 Tatfm~igdgCtr~C~FC~V~~~r~-p~~ld---~~Ep~~~A~av~~-----~GlkeVVLTSv~rdDl~d~Ga~~fa~lI 199 (334)
..-|+-| .-|+..|.||...+... ..... .+.+.++.+.+.. .++..|.+.|++---+ ...++.+++
T Consensus 51 ~~LYvHI-PfC~~~C~yC~~~~~~~~~~~~~~~y~~~L~~Ei~~~~~~~~~~~~v~~i~fgGGTPs~l---~~~~l~~ll 126 (453)
T PRK13347 51 VSLYLHV-PFCRSLCWFCGCNTIITQRDAPVEAYVAALIREIRLVAASLPQRRRVSQLHWGGGTPTIL---NPDQFERLM 126 (453)
T ss_pred eEEEEEe-CCccccCCCCCCcCcCccccchHHHHHHHHHHHHHHHHHhcCCCCeEEEEEEcCcccccC---CHHHHHHHH
Confidence 3455554 45999999999875321 11111 2333333333222 3577888888863222 356889999
Q ss_pred HHHHhhCC-----CCceeee-----------eccccccccccchhhH-HHHHHhhcCCCCCHHHHHHHHHHHHHhCCCcc
Q 019890 200 RKLKELKP-----NMLIEAL-----------VAKSGLNVFAHNIETV-EELQSAVRDHRANFKQSLDVLMMAKDYVPAGT 262 (334)
Q Consensus 200 r~Ik~~~P-----~i~vE~L-----------l~~ag~dv~~HnlETv-~~l~~~Vr~r~~tye~sL~vL~~ak~~~p~Gl 262 (334)
+.|++..+ .+++|+- ++++|.+.+.-.+|+. +.+++.++ |.+++++.++.++.+++. |+
T Consensus 127 ~~i~~~~~~~~~~e~tie~~p~~lt~e~l~~L~~~G~~rvsiGvQS~~~~vl~~l~-R~~~~~~~~~ai~~lr~~---G~ 202 (453)
T PRK13347 127 AALRDAFDFAPEAEIAVEIDPRTVTAEMLQALAALGFNRASFGVQDFDPQVQKAIN-RIQPEEMVARAVELLRAA---GF 202 (453)
T ss_pred HHHHHhCCCCCCceEEEEeccccCCHHHHHHHHHcCCCEEEECCCCCCHHHHHHhC-CCCCHHHHHHHHHHHHhc---CC
Confidence 99987542 2344432 8889999999999985 89999999 899999999999999996 66
Q ss_pred e-EeeceEEec-CCCHHHHHHHHHHHHHcCCcEEeeccCc
Q 019890 263 L-TKTSIMLGC-GETPDQVVSTMEKVRAAGVDVMTFGQYM 300 (334)
Q Consensus 263 ~-tkTgiMVGl-GETdEE~~etl~~Lre~gvd~vtigqYl 300 (334)
. +..++|+|+ |||.+++.++++++.+++++.+.++.|.
T Consensus 203 ~~v~~dli~GlPgqt~e~~~~tl~~~~~l~p~~i~~y~l~ 242 (453)
T PRK13347 203 ESINFDLIYGLPHQTVESFRETLDKVIALSPDRIAVFGYA 242 (453)
T ss_pred CcEEEeEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEeccc
Confidence 4 789999999 9999999999999999999999999885
No 75
>PRK00164 moaA molybdenum cofactor biosynthesis protein A; Reviewed
Probab=99.40 E-value=1.5e-11 Score=119.05 Aligned_cols=179 Identities=16% Similarity=0.220 Sum_probs=131.2
Q ss_pred EEeecCCCCCCCCCcccCCC----CCCCCCCchhHHHHHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhCC
Q 019890 132 IMILGDTCTRGCRFCNVKTS----RAPPPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKP 207 (334)
Q Consensus 132 fm~igdgCtr~C~FC~V~~~----r~p~~ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~P 207 (334)
.+.++++|+-+|.||..... .....++.+|+.++++.+.+.|++.|.+||+.- +-. ..+.++|+.+++..+
T Consensus 20 ~i~vT~~Cnl~C~yC~~~~~~~~~~~~~~ls~eei~~~i~~~~~~gi~~I~~tGGEP--ll~---~~l~~li~~i~~~~~ 94 (331)
T PRK00164 20 RISVTDRCNFRCTYCMPEGYLPFLPKEELLSLEEIERLVRAFVALGVRKVRLTGGEP--LLR---KDLEDIIAALAALPG 94 (331)
T ss_pred EEEEcCCcCcCCCCCCCccCCCCCCccccCCHHHHHHHHHHHHHCCCCEEEEECCCC--cCc---cCHHHHHHHHHhcCC
Confidence 46689999999999987642 112358899999999999999999999999763 211 247788888876532
Q ss_pred CCceeee------------eccccccccccchhhH-HHHHHhhcCCCCCHHHHHHHHHHHHHhCCCcc-eEeeceEEecC
Q 019890 208 NMLIEAL------------VAKSGLNVFAHNIETV-EELQSAVRDHRANFKQSLDVLMMAKDYVPAGT-LTKTSIMLGCG 273 (334)
Q Consensus 208 ~i~vE~L------------l~~ag~dv~~HnlETv-~~l~~~Vr~r~~tye~sL~vL~~ak~~~p~Gl-~tkTgiMVGlG 273 (334)
...+.+. +.++|++.++..+++. +..|..++ +..++++.++.|+.+++. |+ .++..+.+--|
T Consensus 95 ~~~i~itTNG~ll~~~~~~L~~agl~~i~ISlds~~~e~~~~i~-~~~~~~~vl~~i~~~~~~---g~~~v~i~~vv~~g 170 (331)
T PRK00164 95 IRDLALTTNGYLLARRAAALKDAGLDRVNVSLDSLDPERFKAIT-GRDRLDQVLAGIDAALAA---GLTPVKVNAVLMKG 170 (331)
T ss_pred CceEEEEcCchhHHHHHHHHHHcCCCEEEEEeccCCHHHhccCC-CCCCHHHHHHHHHHHHHC---CCCcEEEEEEEECC
Confidence 2233322 6788999888888875 78899998 678999999999999986 45 56665544339
Q ss_pred CCHHHHHHHHHHHHHcCCcEEeeccCcCCCCC-CCcccccCCHHHHHH
Q 019890 274 ETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKR-HMPVSEYITPEAFER 320 (334)
Q Consensus 274 ETdEE~~etl~~Lre~gvd~vtigqYlrP~~~-h~~v~~yv~P~~f~~ 320 (334)
++++|+.++++++++.|++. .+..|+..... .+.-..+++.+++..
T Consensus 171 ~n~~ei~~l~~~~~~~gv~v-~~ie~~p~~~~~~~~~~~~~~~~~~~~ 217 (331)
T PRK00164 171 VNDDEIPDLLEWAKDRGIQL-RFIELMPTGEGNEWFRKHHLSGAEIRA 217 (331)
T ss_pred CCHHHHHHHHHHHHhCCCeE-EEEEeeECCCCcchhhhcCCCHHHHHH
Confidence 99999999999999999974 45557743322 223344566665544
No 76
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=99.39 E-value=1.3e-11 Score=124.41 Aligned_cols=168 Identities=14% Similarity=0.186 Sum_probs=123.4
Q ss_pred ceEEEEeecCCCCCCCCCcccCCCCCCC-CC---CchhHHHHHHHHHHC----CCcEEEEeeecCCCCCCchHHHHHHHH
Q 019890 128 ATATIMILGDTCTRGCRFCNVKTSRAPP-PP---DPDEPTNVAEAIASW----GLDYVVITSVDRDDLADQGSGHFAQTV 199 (334)
Q Consensus 128 ~Tatfm~igdgCtr~C~FC~V~~~r~p~-~l---d~~Ep~~~A~av~~~----GlkeVVLTSv~rdDl~d~Ga~~fa~lI 199 (334)
...-|+-| --|+..|.||.+....+.. .. ..+.+.++++.+.+. .+..|.+-|++-- -....++.+++
T Consensus 39 ~~~lYvHI-PFC~~~C~yC~~~~~~~~~~~~~~~y~~~L~~Ei~~~~~~~~~~~i~~i~~GGGTPs---~l~~~~l~~Ll 114 (430)
T PRK08208 39 ALSLYIHI-PFCEMRCGFCNLFTRTGADAEFIDSYLDALIRQAEQVAEALAPARFASFAVGGGTPT---LLNAAELEKLF 114 (430)
T ss_pred ceEEEEEe-CCccCcCCCCCCccccCCccchHHHHHHHHHHHHHHHHHHcCCCceeEEEEcCCccc---cCCHHHHHHHH
Confidence 36677777 6799999999987643211 11 124444454444332 2455556554321 12356788888
Q ss_pred HHHHhhCC------CCceeee-----------eccccccccccchhhH-HHHHHhhcCCCCCHHHHHHHHHHHHHhCCCc
Q 019890 200 RKLKELKP------NMLIEAL-----------VAKSGLNVFAHNIETV-EELQSAVRDHRANFKQSLDVLMMAKDYVPAG 261 (334)
Q Consensus 200 r~Ik~~~P------~i~vE~L-----------l~~ag~dv~~HnlETv-~~l~~~Vr~r~~tye~sL~vL~~ak~~~p~G 261 (334)
+.|++..+ .+++|+- ++++|++.+...+|+. ++..+.+. |.++.++.++.++.+++. |
T Consensus 115 ~~i~~~~~~~~~~~eitiE~~P~~lt~e~l~~l~~~G~~rvslGvQS~~~~~L~~l~-R~~~~~~~~~ai~~l~~~---g 190 (430)
T PRK08208 115 DSVERVLGVDLGNIPKSVETSPATTTAEKLALLAARGVNRLSIGVQSFHDSELHALH-RPQKRADVHQALEWIRAA---G 190 (430)
T ss_pred HHHHHhCCCCCCCceEEEEeCcCcCCHHHHHHHHHcCCCEEEEecccCCHHHHHHhC-CCCCHHHHHHHHHHHHHc---C
Confidence 88876543 1344442 7788999999999986 88999998 899999999999999996 5
Q ss_pred ce-EeeceEEec-CCCHHHHHHHHHHHHHcCCcEEeeccCc-CCC
Q 019890 262 TL-TKTSIMLGC-GETPDQVVSTMEKVRAAGVDVMTFGQYM-RPS 303 (334)
Q Consensus 262 l~-tkTgiMVGl-GETdEE~~etl~~Lre~gvd~vtigqYl-rP~ 303 (334)
+. +..++|+|+ |||.+++.++++++.+++++.++++++. .|.
T Consensus 191 ~~~i~~dlI~GlP~qt~e~~~~~l~~~~~l~~~~is~y~L~~~~~ 235 (430)
T PRK08208 191 FPILNIDLIYGIPGQTHASWMESLDQALVYRPEELFLYPLYVRPL 235 (430)
T ss_pred CCeEEEEeecCCCCCCHHHHHHHHHHHHhCCCCEEEEccccccCC
Confidence 64 688999999 9999999999999999999999999864 444
No 77
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=99.39 E-value=7e-12 Score=123.74 Aligned_cols=160 Identities=16% Similarity=0.256 Sum_probs=119.1
Q ss_pred CCCCCCCCcccCCCCCCC---CCC----chhHHHHHHHHHH-C-----CCcEEEEeeecCCCCCCchHHHHHHHHHHHHh
Q 019890 138 TCTRGCRFCNVKTSRAPP---PPD----PDEPTNVAEAIAS-W-----GLDYVVITSVDRDDLADQGSGHFAQTVRKLKE 204 (334)
Q Consensus 138 gCtr~C~FC~V~~~r~p~---~ld----~~Ep~~~A~av~~-~-----GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~ 204 (334)
-|...|.||.+.+..... ... .+.+.++++...+ . .++.|.+.|++--- .....+.++++.|++
T Consensus 11 FC~~~C~yC~f~~~~~~~~~~~~~~~~Y~~~l~~Ei~~~~~~~~~~~~~i~~i~~GGGTPs~---l~~~~l~~ll~~i~~ 87 (375)
T PRK05628 11 FCATRCGYCDFNTYTAAELGGGASPDGYLDALRAELELAAAVLGDPAPPVSTVFVGGGTPSL---LGAEGLARVLDAVRD 87 (375)
T ss_pred CcCCcCCCCCCCcccccccccccCHHHHHHHHHHHHHHHHHhhccCCCceeEEEeCCCcccc---CCHHHHHHHHHHHHH
Confidence 699999999997532111 112 3455555554333 2 25566666655211 234678888888887
Q ss_pred hC---CC--Cceeee-----------eccccccccccchhhH-HHHHHhhcCCCCCHHHHHHHHHHHHHhCCCcce-Eee
Q 019890 205 LK---PN--MLIEAL-----------VAKSGLNVFAHNIETV-EELQSAVRDHRANFKQSLDVLMMAKDYVPAGTL-TKT 266 (334)
Q Consensus 205 ~~---P~--i~vE~L-----------l~~ag~dv~~HnlETv-~~l~~~Vr~r~~tye~sL~vL~~ak~~~p~Gl~-tkT 266 (334)
.. ++ +++|+- ++++|++.+.-.+|+. +++.+.|+ |.++.++.++.++.+++. |+. +..
T Consensus 88 ~~~~~~~~e~t~e~~p~~i~~e~l~~l~~~G~~rvslGvQS~~~~~L~~l~-R~~s~~~~~~a~~~l~~~---g~~~v~~ 163 (375)
T PRK05628 88 TFGLAPGAEVTTEANPESTSPEFFAALRAAGFTRVSLGMQSAAPHVLAVLD-RTHTPGRAVAAAREARAA---GFEHVNL 163 (375)
T ss_pred hCCCCCCCEEEEEeCCCCCCHHHHHHHHHcCCCEEEEecccCCHHHHHHcC-CCCCHHHHHHHHHHHHHc---CCCcEEE
Confidence 53 32 344432 7788999999999985 89999999 899999999999999996 676 899
Q ss_pred ceEEec-CCCHHHHHHHHHHHHHcCCcEEeeccCc-CCCC
Q 019890 267 SIMLGC-GETPDQVVSTMEKVRAAGVDVMTFGQYM-RPSK 304 (334)
Q Consensus 267 giMVGl-GETdEE~~etl~~Lre~gvd~vtigqYl-rP~~ 304 (334)
++|+|+ |||.+++.++++.+.+++++++.++++. .|..
T Consensus 164 dli~GlPgqt~~~~~~tl~~~~~l~~~~i~~y~l~~~~gT 203 (375)
T PRK05628 164 DLIYGTPGESDDDWRASLDAALEAGVDHVSAYALIVEDGT 203 (375)
T ss_pred EEeccCCCCCHHHHHHHHHHHHhcCCCEEEeeeeecCCCC
Confidence 999999 9999999999999999999999998875 4544
No 78
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=99.39 E-value=8.5e-12 Score=122.62 Aligned_cols=159 Identities=13% Similarity=0.240 Sum_probs=117.7
Q ss_pred CCCCCCCCcccCCCCCCC-CCC--chhHHHHHH-HHHHCC---CcEEEEeeecCCCCCCchHHHHHHHHHHHHhhC---C
Q 019890 138 TCTRGCRFCNVKTSRAPP-PPD--PDEPTNVAE-AIASWG---LDYVVITSVDRDDLADQGSGHFAQTVRKLKELK---P 207 (334)
Q Consensus 138 gCtr~C~FC~V~~~r~p~-~ld--~~Ep~~~A~-av~~~G---lkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~---P 207 (334)
-|+..|.||.+.+..... ..+ .+...++.+ .+...| ++.|.+.|++---+ ....+.++++.|++.. +
T Consensus 9 FC~~~C~yC~f~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~v~~i~~GGGtPs~l---~~~~l~~ll~~i~~~~~~~~ 85 (360)
T TIGR00539 9 FCENKCGYCDFNSYENKSGPKEEYTQALCQDLKHALSQTDQEPLESIFIGGGTPNTL---SVEAFERLFESIYQHASLSD 85 (360)
T ss_pred CCcCcCCCCCCcccCcCccCHHHHHHHHHHHHHHHHHhcCCCcccEEEeCCCchhcC---CHHHHHHHHHHHHHhCCCCC
Confidence 599999999998643111 111 112222222 223334 78888888873222 3467888888887643 2
Q ss_pred C--Cceeee-----------eccccccccccchhhH-HHHHHhhcCCCCCHHHHHHHHHHHHHhCCCcc-eEeeceEEec
Q 019890 208 N--MLIEAL-----------VAKSGLNVFAHNIETV-EELQSAVRDHRANFKQSLDVLMMAKDYVPAGT-LTKTSIMLGC 272 (334)
Q Consensus 208 ~--i~vE~L-----------l~~ag~dv~~HnlETv-~~l~~~Vr~r~~tye~sL~vL~~ak~~~p~Gl-~tkTgiMVGl 272 (334)
+ +++|+- ++++|++.+...+|+. +++++.|. |.+++++.++.++.+++. |+ .+..++|+|+
T Consensus 86 ~~eitie~np~~lt~e~l~~l~~~Gv~risiGvqS~~~~~l~~lg-R~~~~~~~~~ai~~l~~~---G~~~v~~dli~Gl 161 (360)
T TIGR00539 86 DCEITTEANPELITAEWCKGLKGAGINRLSLGVQSFRDDKLLFLG-RQHSAKNIAPAIETALKS---GIENISLDLMYGL 161 (360)
T ss_pred CCEEEEEeCCCCCCHHHHHHHHHcCCCEEEEecccCChHHHHHhC-CCCCHHHHHHHHHHHHHc---CCCeEEEeccCCC
Confidence 2 344432 7889999999999986 89999998 899999999999999996 67 4789999999
Q ss_pred -CCCHHHHHHHHHHHHHcCCcEEeeccCc-CCC
Q 019890 273 -GETPDQVVSTMEKVRAAGVDVMTFGQYM-RPS 303 (334)
Q Consensus 273 -GETdEE~~etl~~Lre~gvd~vtigqYl-rP~ 303 (334)
|||.+++.++++++.+++++.+.++.+. .|.
T Consensus 162 Pgqt~~~~~~~l~~~~~l~~~~is~y~l~~~~g 194 (360)
T TIGR00539 162 PLQTLNSLKEELKLAKELPINHLSAYALSVEPN 194 (360)
T ss_pred CCCCHHHHHHHHHHHHccCCCEEEeecceEcCC
Confidence 9999999999999999999999998775 454
No 79
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=99.39 E-value=3.1e-11 Score=117.43 Aligned_cols=176 Identities=20% Similarity=0.300 Sum_probs=131.6
Q ss_pred EeecCCCCCCCCCcccCCCC---CCCCCCchhHHHHHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhCCCC
Q 019890 133 MILGDTCTRGCRFCNVKTSR---APPPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNM 209 (334)
Q Consensus 133 m~igdgCtr~C~FC~V~~~r---~p~~ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~P~i 209 (334)
+.+++.|+.+|.||...... ....++.+|+.++++.+.++|++.|.+||+.- +-. ..+.++|+.+++. +++
T Consensus 18 i~iT~~CNl~C~yC~~~~~~~~~~~~~ls~eei~~li~~~~~~Gv~~I~~tGGEP--llr---~dl~~li~~i~~~-~~l 91 (329)
T PRK13361 18 LSVTDRCDFRCVYCMSEDPCFLPRDQVLSLEELAWLAQAFTELGVRKIRLTGGEP--LVR---RGCDQLVARLGKL-PGL 91 (329)
T ss_pred EEecCCccccCCCCCCCCCCcCCccCCCCHHHHHHHHHHHHHCCCCEEEEECcCC--Ccc---ccHHHHHHHHHhC-CCC
Confidence 45799999999999754211 12358999999999999999999999999863 211 2477888888764 332
Q ss_pred -ceeee------------eccccccccccchhhH-HHHHHhhcCCCCCHHHHHHHHHHHHHhCCCcc-eEeeceEEecCC
Q 019890 210 -LIEAL------------VAKSGLNVFAHNIETV-EELQSAVRDHRANFKQSLDVLMMAKDYVPAGT-LTKTSIMLGCGE 274 (334)
Q Consensus 210 -~vE~L------------l~~ag~dv~~HnlETv-~~l~~~Vr~r~~tye~sL~vL~~ak~~~p~Gl-~tkTgiMVGlGE 274 (334)
.+.+. ++++|++.++..+++. +..|..++ +..+|++.++.++.+++. |+ .++...++--|+
T Consensus 92 ~~i~itTNG~ll~~~~~~L~~aGl~~v~ISlDs~~~e~~~~i~-~~g~~~~vl~~i~~~~~~---Gi~~v~in~v~~~g~ 167 (329)
T PRK13361 92 EELSLTTNGSRLARFAAELADAGLKRLNISLDTLRPELFAALT-RNGRLERVIAGIDAAKAA---GFERIKLNAVILRGQ 167 (329)
T ss_pred ceEEEEeChhHHHHHHHHHHHcCCCeEEEEeccCCHHHhhhhc-CCCCHHHHHHHHHHHHHc---CCCceEEEEEEECCC
Confidence 22222 7889999999999986 88999999 688999999999999986 56 566555443399
Q ss_pred CHHHHHHHHHHHHHcCCcEEeeccCcCCCCC--CCcccccCCHHHHHH
Q 019890 275 TPDQVVSTMEKVRAAGVDVMTFGQYMRPSKR--HMPVSEYITPEAFER 320 (334)
Q Consensus 275 TdEE~~etl~~Lre~gvd~vtigqYlrP~~~--h~~v~~yv~P~~f~~ 320 (334)
+++|+.++++++++.|++... ..|| |..+ +..-..+++++++..
T Consensus 168 N~~ei~~~~~~~~~~gi~~~~-ie~m-P~g~~~~~~~~~~~~~~e~~~ 213 (329)
T PRK13361 168 NDDEVLDLVEFCRERGLDIAF-IEEM-PLGEIDERRRARHCSSDEVRA 213 (329)
T ss_pred CHHHHHHHHHHHHhcCCeEEE-Eecc-cCCCccchhhccCcCHHHHHH
Confidence 999999999999999998763 3465 4332 222345788877643
No 80
>TIGR02666 moaA molybdenum cofactor biosynthesis protein A, bacterial. The model for this family describes molybdenum cofactor biosynthesis protein A, or MoaA, as found in bacteria. It does not include the family of probable functional equivalent proteins from the archaea. MoaA works together with MoaC to synthesize precursor Z from guanine.
Probab=99.36 E-value=3.8e-11 Score=116.49 Aligned_cols=158 Identities=20% Similarity=0.294 Sum_probs=123.5
Q ss_pred EeecCCCCCCCCCcccCC-CC----CCCCCCchhHHHHHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhCC
Q 019890 133 MILGDTCTRGCRFCNVKT-SR----APPPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKP 207 (334)
Q Consensus 133 m~igdgCtr~C~FC~V~~-~r----~p~~ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~P 207 (334)
+.+++.|+.+|.||.... .. ....++.+|+.+.++.+.+.|++.|.|||+.- +-. ..|.++|+.+++. +
T Consensus 14 i~vT~~CNl~C~yC~~~~~~~~~~~~~~~ls~eei~~~i~~~~~~gv~~V~ltGGEP--ll~---~~l~~li~~i~~~-~ 87 (334)
T TIGR02666 14 ISVTDRCNLRCVYCMPEGGGLDFLPKEELLTFEEIERLVRAFVGLGVRKVRLTGGEP--LLR---KDLVELVARLAAL-P 87 (334)
T ss_pred EEecCccCcCCCCCCCCcCCCCcCCccCCCCHHHHHHHHHHHHHCCCCEEEEECccc--ccc---CCHHHHHHHHHhc-C
Confidence 457999999999998764 21 12358999999999999999999999999863 221 2477888888763 4
Q ss_pred CC-ceeee------------eccccccccccchhhH-HHHHHhhcCCCCCHHHHHHHHHHHHHhCCCcce-EeeceEEec
Q 019890 208 NM-LIEAL------------VAKSGLNVFAHNIETV-EELQSAVRDHRANFKQSLDVLMMAKDYVPAGTL-TKTSIMLGC 272 (334)
Q Consensus 208 ~i-~vE~L------------l~~ag~dv~~HnlETv-~~l~~~Vr~r~~tye~sL~vL~~ak~~~p~Gl~-tkTgiMVGl 272 (334)
++ .+.+. ++++|++.++..+++. +..|+.++.+..+|++.++.|+.+++. |+. ++..+++.-
T Consensus 88 gi~~v~itTNG~ll~~~~~~L~~~gl~~v~ISld~~~~~~~~~i~~~~~~~~~vl~~i~~l~~~---G~~~v~in~vv~~ 164 (334)
T TIGR02666 88 GIEDIALTTNGLLLARHAKDLKEAGLKRVNVSLDSLDPERFAKITRRGGRLEQVLAGIDAALAA---GLEPVKLNTVVMR 164 (334)
T ss_pred CCCeEEEEeCchhHHHHHHHHHHcCCCeEEEecccCCHHHhheeCCCCCCHHHHHHHHHHHHHc---CCCcEEEEEEEeC
Confidence 44 33332 7788999999999985 788888872356999999999999996 675 777776666
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEeeccCc
Q 019890 273 GETPDQVVSTMEKVRAAGVDVMTFGQYM 300 (334)
Q Consensus 273 GETdEE~~etl~~Lre~gvd~vtigqYl 300 (334)
|++++|+.+.++++++.|++ +.+..|+
T Consensus 165 g~n~~ei~~l~~~~~~~gv~-~~~ie~m 191 (334)
T TIGR02666 165 GVNDDEIVDLAEFAKERGVT-LRFIELM 191 (334)
T ss_pred CCCHHHHHHHHHHHHhcCCe-EEEEecc
Confidence 99999999999999999997 4444465
No 81
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=99.35 E-value=1.3e-11 Score=121.28 Aligned_cols=160 Identities=9% Similarity=0.114 Sum_probs=120.0
Q ss_pred CCCCCCCCCcccCCCCCCCCC---CchhHHHHHHHHHH----CCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhC-C-
Q 019890 137 DTCTRGCRFCNVKTSRAPPPP---DPDEPTNVAEAIAS----WGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELK-P- 207 (334)
Q Consensus 137 dgCtr~C~FC~V~~~r~p~~l---d~~Ep~~~A~av~~----~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~-P- 207 (334)
--|+..|.||.+.+....... ..+.+.++.+...+ .+++.|-+.|++---+ ..+++.++++.|++.. +
T Consensus 8 PFC~~~C~yC~f~~~~~~~~~~~~y~~~L~~Ei~~~~~~~~~~~v~~iyfGGGTPs~l---~~~~l~~ll~~i~~~~~~~ 84 (350)
T PRK08446 8 PFCESKCGYCAFNSYENKHDLKKEYMQALCLDLKFELEQFTDEKIESVFIGGGTPSTV---SAKFYEPIFEIISPYLSKD 84 (350)
T ss_pred CCccCcCCCCCCcCcCCCcccHHHHHHHHHHHHHHHHhhccCCceeEEEECCCccccC---CHHHHHHHHHHHHHhcCCC
Confidence 369999999998764211112 22333444332221 2678888888774223 3567888888887642 2
Q ss_pred -CCceeee-----------eccccccccccchhhH-HHHHHhhcCCCCCHHHHHHHHHHHHHhCCCcce-EeeceEEec-
Q 019890 208 -NMLIEAL-----------VAKSGLNVFAHNIETV-EELQSAVRDHRANFKQSLDVLMMAKDYVPAGTL-TKTSIMLGC- 272 (334)
Q Consensus 208 -~i~vE~L-----------l~~ag~dv~~HnlETv-~~l~~~Vr~r~~tye~sL~vL~~ak~~~p~Gl~-tkTgiMVGl- 272 (334)
.+++|+- ++++|++.+.-.+|+. +++.+.+. |.++.++.++.++.+++. |+. +..++|+|+
T Consensus 85 ~eitiE~nP~~~~~e~l~~l~~~GvnRiSiGvQS~~~~~L~~lg-R~~~~~~~~~ai~~lr~~---g~~~v~iDli~GlP 160 (350)
T PRK08446 85 CEITTEANPNSATKAWLKGMKNLGVNRISFGVQSFNEDKLKFLG-RIHSQKQIIKAIENAKKA---GFENISIDLIYDTP 160 (350)
T ss_pred ceEEEEeCCCCCCHHHHHHHHHcCCCEEEEecccCCHHHHHHcC-CCCCHHHHHHHHHHHHHc---CCCEEEEEeecCCC
Confidence 2455542 7889999999999985 89999998 899999999999999996 564 789999999
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEeeccCc-CCC
Q 019890 273 GETPDQVVSTMEKVRAAGVDVMTFGQYM-RPS 303 (334)
Q Consensus 273 GETdEE~~etl~~Lre~gvd~vtigqYl-rP~ 303 (334)
|||.+++.++++++.+++++++.+.+|. .|.
T Consensus 161 gqt~~~~~~~l~~~~~l~~~~is~y~L~~~~g 192 (350)
T PRK08446 161 LDNKKLLKEELKLAKELPINHLSAYSLTIEEN 192 (350)
T ss_pred CCCHHHHHHHHHHHHhcCCCEEEeccceecCC
Confidence 9999999999999999999999998874 454
No 82
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=99.35 E-value=2.3e-11 Score=121.57 Aligned_cols=161 Identities=13% Similarity=0.174 Sum_probs=120.3
Q ss_pred CCCCCCCCCcccCCCC-CC-C-CCC-------chhHHHHHHHHHHC--CCcEEEEeeecCCCCCCchHHHHHHHHHHHHh
Q 019890 137 DTCTRGCRFCNVKTSR-AP-P-PPD-------PDEPTNVAEAIASW--GLDYVVITSVDRDDLADQGSGHFAQTVRKLKE 204 (334)
Q Consensus 137 dgCtr~C~FC~V~~~r-~p-~-~ld-------~~Ep~~~A~av~~~--GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~ 204 (334)
--|...|.||.+++.. +. . ..+ .+.+.++.+..... +++.|-+-|++--- ....++.++++.|++
T Consensus 18 PFC~~~C~YC~f~~~~~~~~~~~~~~~~~~~Y~~~L~~Ei~~~~~~~~~i~~iy~GGGTps~---l~~~~l~~ll~~i~~ 94 (400)
T PRK07379 18 PFCRRRCFYCDFPISVVGDRTRGGTSGLIEEYVEVLCQEIAITPSFGQPLQTVFFGGGTPSL---LSVEQLERILTTLDQ 94 (400)
T ss_pred ccccCcCCCCCCccccccccccccccchHHHHHHHHHHHHHHhhccCCceeEEEECCCcccc---CCHHHHHHHHHHHHH
Confidence 4699999999997532 11 0 111 12333333332222 46677776665321 245788999999987
Q ss_pred hCC-----CCceeee-----------eccccccccccchhhH-HHHHHhhcCCCCCHHHHHHHHHHHHHhCCCcce-Eee
Q 019890 205 LKP-----NMLIEAL-----------VAKSGLNVFAHNIETV-EELQSAVRDHRANFKQSLDVLMMAKDYVPAGTL-TKT 266 (334)
Q Consensus 205 ~~P-----~i~vE~L-----------l~~ag~dv~~HnlETv-~~l~~~Vr~r~~tye~sL~vL~~ak~~~p~Gl~-tkT 266 (334)
..+ .+++|+- ++++|++.+...+|+. +++.+.|. |.++.++.++.++.+++. |+. ++.
T Consensus 95 ~~~~~~~~eit~E~~P~~lt~e~l~~l~~~GvnrislGvQS~~d~~L~~l~-R~~~~~~~~~ai~~l~~~---G~~~v~~ 170 (400)
T PRK07379 95 RFGIAPDAEISLEIDPGTFDLEQLQGYRSLGVNRVSLGVQAFQDELLALCG-RSHRVKDIFAAVDLIHQA---GIENFSL 170 (400)
T ss_pred hCCCCCCCEEEEEeCCCcCCHHHHHHHHHCCCCEEEEEcccCCHHHHHHhC-CCCCHHHHHHHHHHHHHc---CCCeEEE
Confidence 542 2455532 7889999999999985 99999999 899999999999999996 676 899
Q ss_pred ceEEec-CCCHHHHHHHHHHHHHcCCcEEeeccCc-CCCC
Q 019890 267 SIMLGC-GETPDQVVSTMEKVRAAGVDVMTFGQYM-RPSK 304 (334)
Q Consensus 267 giMVGl-GETdEE~~etl~~Lre~gvd~vtigqYl-rP~~ 304 (334)
++|+|+ |||.+++.++++.+.+++++++.+.++. .|..
T Consensus 171 dlI~GlPgqt~e~~~~tl~~~~~l~p~~is~y~L~~~pgT 210 (400)
T PRK07379 171 DLISGLPHQTLEDWQASLEAAIALNPTHLSCYDLVLEPGT 210 (400)
T ss_pred EeecCCCCCCHHHHHHHHHHHHcCCCCEEEEecceecCCc
Confidence 999999 9999999999999999999999998774 5654
No 83
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=99.34 E-value=1.8e-11 Score=124.02 Aligned_cols=168 Identities=17% Similarity=0.260 Sum_probs=126.1
Q ss_pred eEEEEeecCCCCCCCCCcccCCCCCCCC---CCchhHHHHHHHHHHC------CCcEEEEeeecCCCCCCchHHHHHHHH
Q 019890 129 TATIMILGDTCTRGCRFCNVKTSRAPPP---PDPDEPTNVAEAIASW------GLDYVVITSVDRDDLADQGSGHFAQTV 199 (334)
Q Consensus 129 Tatfm~igdgCtr~C~FC~V~~~r~p~~---ld~~Ep~~~A~av~~~------GlkeVVLTSv~rdDl~d~Ga~~fa~lI 199 (334)
..-|+-| --|...|.||.+.+...... .-.+.+.++++...+. .++.|-+-|++--.| ..+.+.+++
T Consensus 62 ~~lYiHI-PFC~~~C~yC~f~~~~~~~~~~~~Y~~~L~~Ei~~~~~~~~~~~~~i~~iy~GGGTPs~L---~~~~l~~ll 137 (449)
T PRK09058 62 RLLYIHI-PFCRTHCTFCGFFQNAWNPEAVARYTDALIRELAMEADSPLTQSAPIHAVYFGGGTPTAL---SAEDLARLI 137 (449)
T ss_pred eEEEEEe-CCcCCcCCCCCCcCcCCchhhHHHHHHHHHHHHHHHhhccccCCCeeeEEEECCCccccC---CHHHHHHHH
Confidence 5566665 46999999999875321111 1234455555544432 245555555553222 357889999
Q ss_pred HHHHhhCC-----CCceeee-----------eccccccccccchhhH-HHHHHhhcCCCCCHHHHHHHHHHHHHhCCCc-
Q 019890 200 RKLKELKP-----NMLIEAL-----------VAKSGLNVFAHNIETV-EELQSAVRDHRANFKQSLDVLMMAKDYVPAG- 261 (334)
Q Consensus 200 r~Ik~~~P-----~i~vE~L-----------l~~ag~dv~~HnlETv-~~l~~~Vr~r~~tye~sL~vL~~ak~~~p~G- 261 (334)
+.|++..| .+++|.- ++++|++.+...+|+. +++.+.|. |.++.++.++.++.+++. |
T Consensus 138 ~~i~~~~~l~~~~eitiE~~p~~~t~e~l~~l~~aGvnRiSiGVQSf~d~vLk~lg-R~~~~~~~~~~i~~l~~~---g~ 213 (449)
T PRK09058 138 TALREYLPLAPDCEITLEGRINGFDDEKADAALDAGANRFSIGVQSFNTQVRRRAG-RKDDREEVLARLEELVAR---DR 213 (449)
T ss_pred HHHHHhCCCCCCCEEEEEeCcCcCCHHHHHHHHHcCCCEEEecCCcCCHHHHHHhC-CCCCHHHHHHHHHHHHhC---CC
Confidence 99988654 2455542 7889999999999985 89999998 899999999999999986 4
Q ss_pred ceEeeceEEec-CCCHHHHHHHHHHHHHcCCcEEeeccCc-CCCC
Q 019890 262 TLTKTSIMLGC-GETPDQVVSTMEKVRAAGVDVMTFGQYM-RPSK 304 (334)
Q Consensus 262 l~tkTgiMVGl-GETdEE~~etl~~Lre~gvd~vtigqYl-rP~~ 304 (334)
..+..++|+|+ |||.+++.++++++.+++++.+.++++. .|..
T Consensus 214 ~~v~~DlI~GlPgqT~e~~~~~l~~~~~l~~~~is~y~L~~~pgT 258 (449)
T PRK09058 214 AAVVCDLIFGLPGQTPEIWQQDLAIVRDLGLDGVDLYALNLLPGT 258 (449)
T ss_pred CcEEEEEEeeCCCCCHHHHHHHHHHHHhcCCCEEEEeccccCCCC
Confidence 56899999999 9999999999999999999999999875 5654
No 84
>PLN02951 Molybderin biosynthesis protein CNX2
Probab=99.34 E-value=5e-11 Score=118.36 Aligned_cols=177 Identities=15% Similarity=0.249 Sum_probs=130.3
Q ss_pred EeecCCCCCCCCCcccCCCCC----CCCCCchhHHHHHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhCCC
Q 019890 133 MILGDTCTRGCRFCNVKTSRA----PPPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPN 208 (334)
Q Consensus 133 m~igdgCtr~C~FC~V~~~r~----p~~ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~P~ 208 (334)
+.+++.|+.+|.||....+.. ...++.+|+.++++.+.+.|++.|.+||+.- + . ...+.++|+.+++. ++
T Consensus 62 isvT~~CNlrC~yC~~~~~~~~~~~~~~ls~eei~~~i~~~~~~Gv~~I~~tGGEP--l--l-r~dl~eli~~l~~~-~g 135 (373)
T PLN02951 62 ISLTERCNLRCQYCMPEEGVELTPKSHLLSQDEIVRLAGLFVAAGVDKIRLTGGEP--T--L-RKDIEDICLQLSSL-KG 135 (373)
T ss_pred EEEcCCcCcCCCCCCCCcCCCCCCccccCCHHHHHHHHHHHHHCCCCEEEEECCCC--c--c-hhhHHHHHHHHHhc-CC
Confidence 457899999999997653211 1247899999999999999999999999763 1 1 13478889888875 44
Q ss_pred Cc-eeee------------eccccccccccchhhH-HHHHHhhcCCCCCHHHHHHHHHHHHHhCCCcc-eEeeceEEecC
Q 019890 209 ML-IEAL------------VAKSGLNVFAHNIETV-EELQSAVRDHRANFKQSLDVLMMAKDYVPAGT-LTKTSIMLGCG 273 (334)
Q Consensus 209 i~-vE~L------------l~~ag~dv~~HnlETv-~~l~~~Vr~r~~tye~sL~vL~~ak~~~p~Gl-~tkTgiMVGlG 273 (334)
+. +.+. ++++|++.++..+++. +..|+.++ ++..+++.++.|+.+++. |+ .++..+.+--|
T Consensus 136 i~~i~itTNG~lL~~~~~~L~~aGld~VnISLDsl~~e~~~~it-r~~~~~~vl~~I~~a~~~---G~~~vkin~vv~~g 211 (373)
T PLN02951 136 LKTLAMTTNGITLSRKLPRLKEAGLTSLNISLDTLVPAKFEFLT-RRKGHDRVLESIDTAIEL---GYNPVKVNCVVMRG 211 (373)
T ss_pred CceEEEeeCcchHHHHHHHHHhCCCCeEEEeeccCCHHHHHHHh-cCCCHHHHHHHHHHHHHc---CCCcEEEEEEecCC
Confidence 32 3222 7789999999999985 88899998 577899999999999986 54 35544444348
Q ss_pred CCHHHHHHHHHHHHHcCCcEEeeccCcCCCCCCCcccccCCHHHHHH
Q 019890 274 ETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMPVSEYITPEAFER 320 (334)
Q Consensus 274 ETdEE~~etl~~Lre~gvd~vtigqYlrP~~~h~~v~~yv~P~~f~~ 320 (334)
++++|+.+.++++++.+++ +.+..|+........-..+++.+++..
T Consensus 212 ~N~~Ei~~li~~a~~~gi~-vr~ie~mP~~~~~~~~~~~~~~~ei~~ 257 (373)
T PLN02951 212 FNDDEICDFVELTRDKPIN-VRFIEFMPFDGNVWNVKKLVPYAEMMD 257 (373)
T ss_pred CCHHHHHHHHHHHHhCCCe-EEEEEcccCCCCccccccCCCHHHHHH
Confidence 9999999999999999975 555568765544333344565554433
No 85
>TIGR02668 moaA_archaeal probable molybdenum cofactor biosynthesis protein A, archaeal. This model describes an archaeal family related, and predicted to be functionally equivalent, to molybdenum cofactor biosynthesis protein A (MoaA) of bacteria (see TIGR02666).
Probab=99.32 E-value=1.2e-10 Score=111.20 Aligned_cols=163 Identities=17% Similarity=0.335 Sum_probs=124.5
Q ss_pred eEEEEeecCCCCCCCCCcccCCCCC--CCCCCchhHHHHHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhC
Q 019890 129 TATIMILGDTCTRGCRFCNVKTSRA--PPPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELK 206 (334)
Q Consensus 129 Tatfm~igdgCtr~C~FC~V~~~r~--p~~ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~ 206 (334)
..-.+.+++.|+.+|.||..+.... ...++.+|+.++++.+...|++.|.+||+.. +-. ..|.++|+.+++.
T Consensus 10 ~~l~i~vT~~CNl~C~yC~~~~~~~~~~~~ls~eei~~~i~~~~~~gi~~I~~tGGEP--ll~---~~l~~iv~~l~~~- 83 (302)
T TIGR02668 10 TSLRISVTDRCNLSCFYCHMEGEDRSGGNELSPEEIERIVRVASEFGVRKVKITGGEP--LLR---KDLIEIIRRIKDY- 83 (302)
T ss_pred CeEEEEEcccccCCCCCCCccccCCCccCcCCHHHHHHHHHHHHHcCCCEEEEECccc--ccc---cCHHHHHHHHHhC-
Confidence 3445778999999999998764321 1358999999999999999999999999863 211 2367888888764
Q ss_pred CCC-ceeee------------eccccccccccchhhH-HHHHHhhcCCCCCHHHHHHHHHHHHHhCCCcce-EeeceEEe
Q 019890 207 PNM-LIEAL------------VAKSGLNVFAHNIETV-EELQSAVRDHRANFKQSLDVLMMAKDYVPAGTL-TKTSIMLG 271 (334)
Q Consensus 207 P~i-~vE~L------------l~~ag~dv~~HnlETv-~~l~~~Vr~r~~tye~sL~vL~~ak~~~p~Gl~-tkTgiMVG 271 (334)
++ .+.+. +.++|++.++..+++. +..|+.++ ++.+|++.++.++.+++. |+. ++..+++-
T Consensus 84 -g~~~v~i~TNG~ll~~~~~~l~~~g~~~v~iSld~~~~~~~~~i~-~~~~~~~vl~~i~~~~~~---G~~~v~i~~v~~ 158 (302)
T TIGR02668 84 -GIKDVSMTTNGILLEKLAKKLKEAGLDRVNVSLDTLDPEKYKKIT-GRGALDRVIEGIESAVDA---GLTPVKLNMVVL 158 (302)
T ss_pred -CCceEEEEcCchHHHHHHHHHHHCCCCEEEEEecCCCHHHhhhcc-CCCcHHHHHHHHHHHHHc---CCCcEEEEEEEe
Confidence 22 23222 6778898888889985 78899998 578999999999999986 554 66555443
Q ss_pred cCCCHHHHHHHHHHHHHcCCcEEeeccCcCCC
Q 019890 272 CGETPDQVVSTMEKVRAAGVDVMTFGQYMRPS 303 (334)
Q Consensus 272 lGETdEE~~etl~~Lre~gvd~vtigqYlrP~ 303 (334)
=|++++|+.+.++++++.|++ +.+..|+...
T Consensus 159 ~g~n~~ei~~~~~~~~~~g~~-~~~ie~~p~~ 189 (302)
T TIGR02668 159 KGINDNEIPDMVEFAAEGGAI-LQLIELMPPG 189 (302)
T ss_pred CCCCHHHHHHHHHHHHhcCCE-EEEEEEeECC
Confidence 389999999999999999997 5555676443
No 86
>PRK08898 coproporphyrinogen III oxidase; Provisional
Probab=99.30 E-value=1.1e-10 Score=116.53 Aligned_cols=190 Identities=15% Similarity=0.197 Sum_probs=133.9
Q ss_pred CCCCCCCCCcccCCCCCCC--CCC----chhHHHHHHHHHH----CCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhC
Q 019890 137 DTCTRGCRFCNVKTSRAPP--PPD----PDEPTNVAEAIAS----WGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELK 206 (334)
Q Consensus 137 dgCtr~C~FC~V~~~r~p~--~ld----~~Ep~~~A~av~~----~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~ 206 (334)
--|...|.||.+++..... ... .+.+.++++.... ..++-|-|-|++---| ..+.+.++++.|++..
T Consensus 27 PFC~~~C~yC~f~~~~~~~~~~~~~~~Y~~~l~~ei~~~~~~~~~~~i~siy~GGGTPs~L---~~~~L~~ll~~i~~~~ 103 (394)
T PRK08898 27 PWCVRKCPYCDFNSHEWKDGGAIPEAAYLDALRADLEQALPLVWGRQVHTVFIGGGTPSLL---SAAGLDRLLSDVRALL 103 (394)
T ss_pred CCccCcCCCCCCcccccCCCCccCHHHHHHHHHHHHHHHHHhccCCceeEEEECCCCcCCC---CHHHHHHHHHHHHHhC
Confidence 4699999999997643211 111 2344444443322 2356777777764333 3578999999998876
Q ss_pred CC-----Cceeee-----------eccccccccccchhhH-HHHHHhhcCCCCCHHHHHHHHHHHHHhCCCcceEeeceE
Q 019890 207 PN-----MLIEAL-----------VAKSGLNVFAHNIETV-EELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIM 269 (334)
Q Consensus 207 P~-----i~vE~L-----------l~~ag~dv~~HnlETv-~~l~~~Vr~r~~tye~sL~vL~~ak~~~p~Gl~tkTgiM 269 (334)
|- +++|+- ++++|++.+.-.+|+. +.+++.|. |.++.++.++.++.+++.+ ..+..++|
T Consensus 104 ~~~~~~eit~E~~p~~~~~e~L~~l~~~GvnrisiGvQS~~~~~L~~l~-R~~~~~~~~~~i~~~~~~~---~~v~~dlI 179 (394)
T PRK08898 104 PLDPDAEITLEANPGTFEAEKFAQFRASGVNRLSIGIQSFNDAHLKALG-RIHDGAEARAAIEIAAKHF---DNFNLDLM 179 (394)
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHcCCCeEEEecccCCHHHHHHhC-CCCCHHHHHHHHHHHHHhC---CceEEEEE
Confidence 43 445542 8899999999999985 99999998 8899999999999999863 45899999
Q ss_pred Eec-CCCHHHHHHHHHHHHHcCCcEEeeccCc-CCCCCCCccc-ccCCHHHHHHHHHHHHHhhcCCC
Q 019890 270 LGC-GETPDQVVSTMEKVRAAGVDVMTFGQYM-RPSKRHMPVS-EYITPEAFERYRALGMEMVSGSG 333 (334)
Q Consensus 270 VGl-GETdEE~~etl~~Lre~gvd~vtigqYl-rP~~~h~~v~-~yv~P~~f~~~~~~a~~~~~~~~ 333 (334)
+|+ |+|.+++.++++.+.++++++|+++++. .|...-.+.. ..-..++..++.+++.+.-++.|
T Consensus 180 ~GlPgqt~~~~~~~l~~~~~l~p~~is~y~l~~~~gT~l~~~~~~~~~~~~~~~~~~~~~~~L~~~G 246 (394)
T PRK08898 180 YALPGQTLDEALADVETALAFGPPHLSLYHLTLEPNTLFAKFPPALPDDDASADMQDWIEARLAAAG 246 (394)
T ss_pred cCCCCCCHHHHHHHHHHHHhcCCCEEEEeeeEECCCChhhhccCCCCChHHHHHHHHHHHHHHHHcC
Confidence 999 9999999999999999999999999885 5654211111 11223444455556665544433
No 87
>PRK09057 coproporphyrinogen III oxidase; Provisional
Probab=99.29 E-value=1.1e-10 Score=115.95 Aligned_cols=164 Identities=12% Similarity=0.157 Sum_probs=124.3
Q ss_pred EEEeecCCCCCCCCCcccCCCCCCCCCC----chhHHHHHHHHHH----CCCcEEEEeeecCCCCCCchHHHHHHHHHHH
Q 019890 131 TIMILGDTCTRGCRFCNVKTSRAPPPPD----PDEPTNVAEAIAS----WGLDYVVITSVDRDDLADQGSGHFAQTVRKL 202 (334)
Q Consensus 131 tfm~igdgCtr~C~FC~V~~~r~p~~ld----~~Ep~~~A~av~~----~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~I 202 (334)
-|+-| --|.+.|.||.+.+.... ... .+.+.++.+.+.+ ..++.|-+.|++---+ ..+.+.++++.|
T Consensus 7 lYiHI-PFC~~kC~yC~f~~~~~~-~~~~~~Y~~aL~~Ei~~~~~~~~~~~i~tiy~GGGTPs~l---~~~~L~~ll~~i 81 (380)
T PRK09057 7 LYVHW-PFCLAKCPYCDFNSHVRH-AIDQARFAAAFLRELATEAARTGPRTLTSIFFGGGTPSLM---QPETVAALLDAI 81 (380)
T ss_pred EEEEe-CCcCCcCCCCCCcccCcC-cCCHHHHHHHHHHHHHHHHHHcCCCCcCeEEeCCCccccC---CHHHHHHHHHHH
Confidence 34433 469999999999864321 121 2334444443332 2467777777764323 256788999999
Q ss_pred HhhCCC-----Cceeee-----------eccccccccccchhhH-HHHHHhhcCCCCCHHHHHHHHHHHHHhCCCcceEe
Q 019890 203 KELKPN-----MLIEAL-----------VAKSGLNVFAHNIETV-EELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTK 265 (334)
Q Consensus 203 k~~~P~-----i~vE~L-----------l~~ag~dv~~HnlETv-~~l~~~Vr~r~~tye~sL~vL~~ak~~~p~Gl~tk 265 (334)
++..|- +++|+- ++++|++.+.-.+|+. +++.+.|. |.++.++.++.++.+++. +..+.
T Consensus 82 ~~~f~~~~~~eit~E~~P~~i~~e~L~~l~~~GvnrislGvQS~~d~vL~~l~-R~~~~~~~~~ai~~~~~~---~~~v~ 157 (380)
T PRK09057 82 ARLWPVADDIEITLEANPTSVEAGRFRGYRAAGVNRVSLGVQALNDADLRFLG-RLHSVAEALAAIDLAREI---FPRVS 157 (380)
T ss_pred HHhCCCCCCccEEEEECcCcCCHHHHHHHHHcCCCEEEEecccCCHHHHHHcC-CCCCHHHHHHHHHHHHHh---CccEE
Confidence 886532 455543 7889999999999985 89999999 899999999999999986 45689
Q ss_pred eceEEec-CCCHHHHHHHHHHHHHcCCcEEeeccCc-CCC
Q 019890 266 TSIMLGC-GETPDQVVSTMEKVRAAGVDVMTFGQYM-RPS 303 (334)
Q Consensus 266 TgiMVGl-GETdEE~~etl~~Lre~gvd~vtigqYl-rP~ 303 (334)
.++|+|+ |+|.+++.++++.+.+++++++.+.++. .|.
T Consensus 158 ~dli~GlPgqt~~~~~~~l~~~~~l~p~~is~y~L~~~~g 197 (380)
T PRK09057 158 FDLIYARPGQTLAAWRAELKEALSLAADHLSLYQLTIEEG 197 (380)
T ss_pred EEeecCCCCCCHHHHHHHHHHHHhcCCCeEEeecceecCC
Confidence 9999999 9999999999999999999999998885 555
No 88
>PRK08629 coproporphyrinogen III oxidase; Provisional
Probab=99.28 E-value=1.1e-10 Score=118.18 Aligned_cols=191 Identities=11% Similarity=0.130 Sum_probs=124.5
Q ss_pred EEEEeecCCCCCCCCCcccCCCCCCCC-C--CchhHHHHHHHHHHCCCc--EEEEeeecCCCCCCchHHHHHHHHHHHHh
Q 019890 130 ATIMILGDTCTRGCRFCNVKTSRAPPP-P--DPDEPTNVAEAIASWGLD--YVVITSVDRDDLADQGSGHFAQTVRKLKE 204 (334)
Q Consensus 130 atfm~igdgCtr~C~FC~V~~~r~p~~-l--d~~Ep~~~A~av~~~Glk--eVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~ 204 (334)
.-|+-|. -|.+.|.||.+.+...... . -.+.+.++++.+++.|.+ .|-+-|++- ..-...+.++++.|++
T Consensus 54 ~LYvHIP-FC~~~C~yC~f~~~~~~~~~~~~Y~~~L~~Ei~~~~~~~~~~~siy~GGGTP----s~l~~~L~~ll~~i~~ 128 (433)
T PRK08629 54 MLYAHVP-FCHTLCPYCSFHRFYFKEDKARAYFISLRKEMEMVKELGYDFESMYVGGGTT----TILEDELAKTLELAKK 128 (433)
T ss_pred EEEEEeC-CccCcCCCCCCcCcCCCcchHHHHHHHHHHHHHHHHhcCCceEEEEECCCcc----ccCHHHHHHHHHHHHH
Confidence 4455553 6999999999985321111 1 246667777766666643 344444432 1123678889988887
Q ss_pred hCC--CCceeee-----------eccccccccccchhhH-HHHHHhhcCCCCCHHHHHHHHHHHHHhCCCcceEeeceEE
Q 019890 205 LKP--NMLIEAL-----------VAKSGLNVFAHNIETV-EELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIML 270 (334)
Q Consensus 205 ~~P--~i~vE~L-----------l~~ag~dv~~HnlETv-~~l~~~Vr~r~~tye~sL~vL~~ak~~~p~Gl~tkTgiMV 270 (334)
..+ ++++|+- +.+. ++.+...+|+. +++.+.|. |.+++....++++.++.....+..+..++|+
T Consensus 129 ~f~i~eis~E~~P~~lt~e~L~~l~~~-vnrlsiGVQS~~d~vLk~~g-R~h~~~~~~~~~~~l~~~~~~~~~v~~DlI~ 206 (433)
T PRK08629 129 LFSIKEVSCESDPNHLDPPKLKQLKGL-IDRLSIGVQSFNDDILKMVD-RYEKFGSGQETFEKIMKAKGLFPIINVDLIF 206 (433)
T ss_pred hCCCceEEEEeCcccCCHHHHHHHHHh-CCeEEEecCcCCHHHHHHcC-CCCChhHHHHHHHHHHHHhccCCeEEEEEEc
Confidence 653 2455543 5555 77777778875 89999998 7888766644444444432112347899999
Q ss_pred ec-CCCHHHHHHHHHHHHHcCCcEEeeccCc-CCCCCCCcccc---cCCHHHHHHHHHHHHHh
Q 019890 271 GC-GETPDQVVSTMEKVRAAGVDVMTFGQYM-RPSKRHMPVSE---YITPEAFERYRALGMEM 328 (334)
Q Consensus 271 Gl-GETdEE~~etl~~Lre~gvd~vtigqYl-rP~~~h~~v~~---yv~P~~f~~~~~~a~~~ 328 (334)
|| |||.|++.++++++.+++++++++++++ .|..+. .+.+ ....+....+.+++.++
T Consensus 207 GlPgqT~e~~~~~l~~~~~l~p~~is~y~L~~~~~t~~-~~~~~~~~p~~d~~~~~~~~~~~~ 268 (433)
T PRK08629 207 NFPGQTDEVLQHDLDIAKRLDPRQITTYPLMKSHQTRK-SVKGSLGASQKDNERQYYQIINEL 268 (433)
T ss_pred cCCCCCHHHHHHHHHHHHhCCCCEEEEccceeccCchh-hhcCCCCCcCHHHHHHHHHHHHHH
Confidence 99 9999999999999999999999999986 665432 1222 12334445555566554
No 89
>PRK06294 coproporphyrinogen III oxidase; Provisional
Probab=99.26 E-value=1.1e-10 Score=115.53 Aligned_cols=167 Identities=13% Similarity=0.223 Sum_probs=119.8
Q ss_pred EEEEeecCCCCCCCCCcccCCCCCC-CCCC--chhHHHH-HHHHHH----CCCcEEEEeeecCCCCCCchHHHHHHHHHH
Q 019890 130 ATIMILGDTCTRGCRFCNVKTSRAP-PPPD--PDEPTNV-AEAIAS----WGLDYVVITSVDRDDLADQGSGHFAQTVRK 201 (334)
Q Consensus 130 atfm~igdgCtr~C~FC~V~~~r~p-~~ld--~~Ep~~~-A~av~~----~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~ 201 (334)
.-|+-| --|.+.|.||.+.+.... ...+ .+...++ .+.+.. ..++.|-+.|++---+ ...++.++++.
T Consensus 8 ~lYiHI-PFC~~~C~yC~f~~~~~~~~~~~~y~~~l~~E~~~~~~~~~~~~~i~~iy~GGGTPs~l---~~~~l~~ll~~ 83 (370)
T PRK06294 8 ALYIHI-PFCTKKCHYCSFYTIPYKEESVSLYCNAVLKEGLKKLAPLRCSHFIDTVFFGGGTPSLV---PPALIQDILKT 83 (370)
T ss_pred EEEEEe-CCccCcCCCCcCcccCCCccCHHHHHHHHHHHHHHHhhhhccCCceeEEEECCCccccC---CHHHHHHHHHH
Confidence 445443 579999999998754211 1111 1112222 221221 2345566667663222 24678888888
Q ss_pred HHhh-CCCCceeee-----------eccccccccccchhhH-HHHHHhhcCCCCCHHHHHHHHHHHHHhCCCcce-Eeec
Q 019890 202 LKEL-KPNMLIEAL-----------VAKSGLNVFAHNIETV-EELQSAVRDHRANFKQSLDVLMMAKDYVPAGTL-TKTS 267 (334)
Q Consensus 202 Ik~~-~P~i~vE~L-----------l~~ag~dv~~HnlETv-~~l~~~Vr~r~~tye~sL~vL~~ak~~~p~Gl~-tkTg 267 (334)
|++. ..++++|+- ++++|++.+.-.+|+. +++++.+. |.++.++.++.++.+++. |+. ++.+
T Consensus 84 i~~~~~~eit~E~~P~~~~~~~l~~l~~~G~nrislGvQS~~~~~L~~l~-R~~~~~~~~~ai~~~~~~---g~~~v~~D 159 (370)
T PRK06294 84 LEAPHATEITLEANPENLSESYIRALALTGINRISIGVQTFDDPLLKLLG-RTHSSSKAIDAVQECSEH---GFSNLSID 159 (370)
T ss_pred HHhCCCCeEEEEeCCCCCCHHHHHHHHHCCCCEEEEccccCCHHHHHHcC-CCCCHHHHHHHHHHHHHc---CCCeEEEE
Confidence 8653 123566643 7889999999999985 89999999 899999999999999996 674 8999
Q ss_pred eEEec-CCCHHHHHHHHHHHHHcCCcEEeeccCc-CCCC
Q 019890 268 IMLGC-GETPDQVVSTMEKVRAAGVDVMTFGQYM-RPSK 304 (334)
Q Consensus 268 iMVGl-GETdEE~~etl~~Lre~gvd~vtigqYl-rP~~ 304 (334)
+|+|+ |||.+++.++++.+.+++++++.+.++. .|..
T Consensus 160 li~GlPgqt~~~~~~~l~~~~~l~~~~is~y~l~~~~gT 198 (370)
T PRK06294 160 LIYGLPTQSLSDFIVDLHQAITLPITHISLYNLTIDPHT 198 (370)
T ss_pred eecCCCCCCHHHHHHHHHHHHccCCCeEEEeeeEecCCC
Confidence 99999 9999999999999999999999998875 5653
No 90
>PRK06582 coproporphyrinogen III oxidase; Provisional
Probab=99.20 E-value=2.8e-10 Score=113.66 Aligned_cols=166 Identities=11% Similarity=0.173 Sum_probs=122.5
Q ss_pred EEEEeecCCCCCCCCCcccCCCCCCCCCCc--------hhHHHHHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHH
Q 019890 130 ATIMILGDTCTRGCRFCNVKTSRAPPPPDP--------DEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRK 201 (334)
Q Consensus 130 atfm~igdgCtr~C~FC~V~~~r~p~~ld~--------~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~ 201 (334)
.-|+-| --|...|.||.+.+.... .... .|+...+..+....++.|-+.|++---+ ..+.+.++++.
T Consensus 13 ~lYiHi-PFC~~~C~yC~f~~~~~~-~~~~~~Y~~aL~~Ei~~~~~~~~~~~i~tiy~GGGTPs~l---~~~~l~~ll~~ 87 (390)
T PRK06582 13 SIYIHW-PFCLSKCPYCDFNSHVAS-TIDHNQWLKSYEKEIEYFKDIIQNKYIKSIFFGGGTPSLM---NPVIVEGIINK 87 (390)
T ss_pred EEEEEe-CCCcCcCCCCCCeeccCC-CCCHHHHHHHHHHHHHHHHHHccCCceeEEEECCCccccC---CHHHHHHHHHH
Confidence 344443 589999999999764311 1111 1222222222112467788888874223 35678888888
Q ss_pred HHhhC--C---CCceeee-----------eccccccccccchhhH-HHHHHhhcCCCCCHHHHHHHHHHHHHhCCCcceE
Q 019890 202 LKELK--P---NMLIEAL-----------VAKSGLNVFAHNIETV-EELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLT 264 (334)
Q Consensus 202 Ik~~~--P---~i~vE~L-----------l~~ag~dv~~HnlETv-~~l~~~Vr~r~~tye~sL~vL~~ak~~~p~Gl~t 264 (334)
|++.. + ++++|+- ++++|++.+.-.+|+. +++++.+. |.++.++.++.++.+++. +..+
T Consensus 88 i~~~~~~~~~~eitiE~nP~~~~~e~l~~l~~~GvnRiSiGvQS~~d~~L~~lg-R~h~~~~~~~ai~~~~~~---~~~v 163 (390)
T PRK06582 88 ISNLAIIDNQTEITLETNPTSFETEKFKAFKLAGINRVSIGVQSLKEDDLKKLG-RTHDCMQAIKTIEAANTI---FPRV 163 (390)
T ss_pred HHHhCCCCCCCEEEEEeCCCcCCHHHHHHHHHCCCCEEEEECCcCCHHHHHHcC-CCCCHHHHHHHHHHHHHh---CCcE
Confidence 88743 2 2455553 8889999999999985 89999999 899999999999999986 3468
Q ss_pred eeceEEec-CCCHHHHHHHHHHHHHcCCcEEeeccCc-CCCC
Q 019890 265 KTSIMLGC-GETPDQVVSTMEKVRAAGVDVMTFGQYM-RPSK 304 (334)
Q Consensus 265 kTgiMVGl-GETdEE~~etl~~Lre~gvd~vtigqYl-rP~~ 304 (334)
..++|+|+ |+|.+++.++++.+.++++++|.+.++. .|..
T Consensus 164 ~~DlI~GlPgqt~e~~~~~l~~~~~l~p~his~y~L~i~~gT 205 (390)
T PRK06582 164 SFDLIYARSGQTLKDWQEELKQAMQLATSHISLYQLTIEKGT 205 (390)
T ss_pred EEEeecCCCCCCHHHHHHHHHHHHhcCCCEEEEecCEEccCC
Confidence 99999999 9999999999999999999999998885 6654
No 91
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=99.18 E-value=3.4e-09 Score=104.55 Aligned_cols=195 Identities=15% Similarity=0.183 Sum_probs=136.1
Q ss_pred CCCcccccCCCCCcceEEEEeecCCCCCCCCCcccCCCC--CCCCCCchhHHHHHHHHHHCCCcEEEEeeecCCCCCCch
Q 019890 114 PNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSR--APPPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQG 191 (334)
Q Consensus 114 pni~ec~~~~~~~~~Tatfm~igdgCtr~C~FC~V~~~r--~p~~ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~G 191 (334)
|....++..- ...++.+++.|+-+|.||...... ....++.+++.++++.+.+.|+..|.+||+.- +-
T Consensus 6 ~~~~~~~~~P-----~~l~i~iT~~CNl~C~~C~~~~~~~~~~~~~~~e~~~~ii~~~~~~g~~~v~~~GGEP--ll--- 75 (378)
T PRK05301 6 PAAAPAVGPP-----LWLLAELTYRCPLQCPYCSNPLDLARHGAELSTEEWIRVLREARALGALQLHFSGGEP--LL--- 75 (378)
T ss_pred CCCCCCCCCC-----eEEEEEecCccCcCCCCCCCccccccccCCCCHHHHHHHHHHHHHcCCcEEEEECCcc--CC---
Confidence 4444455543 566678999999999999875422 13468899999999999999999999999873 21
Q ss_pred HHHHHHHHHHHHhhCCCCceeee-------------eccccccccccchhhH-HHHHHhhcCCCCCHHHHHHHHHHHHHh
Q 019890 192 SGHFAQTVRKLKELKPNMLIEAL-------------VAKSGLNVFAHNIETV-EELQSAVRDHRANFKQSLDVLMMAKDY 257 (334)
Q Consensus 192 a~~fa~lIr~Ik~~~P~i~vE~L-------------l~~ag~dv~~HnlETv-~~l~~~Vr~r~~tye~sL~vL~~ak~~ 257 (334)
..+|.++|+.+++. ++.+.+. +.+.|++.+..-++.. +..+..++....+|++.++.++.+++.
T Consensus 76 ~~~~~~il~~~~~~--g~~~~i~TNG~ll~~~~~~~L~~~g~~~v~iSldg~~~e~~d~irg~~g~f~~~~~~i~~l~~~ 153 (378)
T PRK05301 76 RKDLEELVAHAREL--GLYTNLITSGVGLTEARLAALKDAGLDHIQLSFQDSDPELNDRLAGTKGAFAKKLAVARLVKAH 153 (378)
T ss_pred chhHHHHHHHHHHc--CCcEEEECCCccCCHHHHHHHHHcCCCEEEEEecCCCHHHHHHHcCCCchHHHHHHHHHHHHHC
Confidence 12477889888864 3333332 6677888777778875 788888884335899999999999985
Q ss_pred CCCcceEeeceEEec-CCCHHHHHHHHHHHHHcCCcEEeeccCcCCCCCCC-cc-cccCCHHHHHHHHHHHH
Q 019890 258 VPAGTLTKTSIMLGC-GETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHM-PV-SEYITPEAFERYRALGM 326 (334)
Q Consensus 258 ~p~Gl~tkTgiMVGl-GETdEE~~etl~~Lre~gvd~vtigqYlrP~~~h~-~v-~~yv~P~~f~~~~~~a~ 326 (334)
|+.+ ++.+.+ ..+.+|+.+++++++++|++.+.+.. +.|..... .. .-..++++++.+.++..
T Consensus 154 ---g~~v--~i~~vv~~~N~~~i~~~~~~~~~lgv~~i~~~~-~~~~g~~~~~~~~~~~~~e~~~~~~~~~~ 219 (378)
T PRK05301 154 ---GYPL--TLNAVIHRHNIDQIPRIIELAVELGADRLELAN-TQYYGWALLNRAALMPTREQLERAERIVE 219 (378)
T ss_pred ---CCce--EEEEEeecCCHHHHHHHHHHHHHcCCCEEEEec-ccccChhhhcccccCCCHHHHHHHHHHHH
Confidence 5543 444455 88999999999999999999998753 23322111 11 11345666665544433
No 92
>TIGR01210 conserved hypothetical protein TIGR01210. This family of exclusively archaeal proteins has no characterized close homologs. Several rounds of PSI-BLAST with a stringent cutoff of 1e-8 shows apparent similarity of the central region of this family to the central regions of the oxygen-independent coproporphyrinogen III dehydrogenase HemN and to other enzymes.
Probab=99.15 E-value=1.4e-09 Score=105.73 Aligned_cols=190 Identities=17% Similarity=0.249 Sum_probs=131.1
Q ss_pred eEEEEeecCCCCC----CCCCcccCCCCCCCCCCchhHHHHHHHHHH-CCCcE---E--EEeeecCCCCCCchHHHHHHH
Q 019890 129 TATIMILGDTCTR----GCRFCNVKTSRAPPPPDPDEPTNVAEAIAS-WGLDY---V--VITSVDRDDLADQGSGHFAQT 198 (334)
Q Consensus 129 Tatfm~igdgCtr----~C~FC~V~~~r~p~~ld~~Ep~~~A~av~~-~Glke---V--VLTSv~rdDl~d~Ga~~fa~l 198 (334)
+-+++.-+-||+. +|+||+..... ....+++++.+.++.+.+ .+.++ + ++|++.--|-.....+.+.++
T Consensus 15 ~~~~i~~srGC~~~~~g~C~FC~~~~~~-~r~~s~e~i~~~i~~~~~~~~~~~~~~~ikif~sgsf~D~~~~~~~~~~~i 93 (313)
T TIGR01210 15 SLTIILRTRGCYWAREGGCYMCGYLADS-SPEVTEENLINQFDEAIEKYKEKIKDFVIKIFTSGSFLDDREVPKETRNYI 93 (313)
T ss_pred eEEEEEeCCCCCCCCCCcCccCCCCCCC-CCCCChhHHHHHHHHHHHHhhcccccEEEEEecCCCcCCcCcCCHHHHHHH
Confidence 5556777999999 59999876532 234678888877765544 34332 2 356653212122235566778
Q ss_pred HHHHHhhCC---CCceeee-----------ecccccc-ccccchhh-HHHHHH-hhcCCCCCHHHHHHHHHHHHHhCCCc
Q 019890 199 VRKLKELKP---NMLIEAL-----------VAKSGLN-VFAHNIET-VEELQS-AVRDHRANFKQSLDVLMMAKDYVPAG 261 (334)
Q Consensus 199 Ir~Ik~~~P---~i~vE~L-----------l~~ag~d-v~~HnlET-v~~l~~-~Vr~r~~tye~sL~vL~~ak~~~p~G 261 (334)
+++|++. + .+++|.- ++++|.. .+...+|+ .+++.+ .|+ ++++.++.++.++.+++. |
T Consensus 94 ~~~l~~~-~~~~~i~~esrpd~i~~e~L~~l~~aG~~~~v~iG~ES~~d~~L~~~in-Kg~t~~~~~~ai~~~~~~---G 168 (313)
T TIGR01210 94 FEKIAQR-DNLKEVVVESRPEFIDEEKLEELRKIGVNVEVAVGLETANDRIREKSIN-KGSTFEDFIRAAELARKY---G 168 (313)
T ss_pred HHHHHhc-CCcceEEEEeCCCcCCHHHHHHHHHcCCCEEEEEecCcCCHHHHHHhhC-CCCCHHHHHHHHHHHHHc---C
Confidence 8887763 3 1333321 7888987 58888998 488885 799 799999999999999996 7
Q ss_pred ceEeeceEEec-C----CCHHHHHHHHHHHHHcCCcEEeeccCc-CCCCC---CCcccccCCH---HHHHHHHHHH
Q 019890 262 TLTKTSIMLGC-G----ETPDQVVSTMEKVRAAGVDVMTFGQYM-RPSKR---HMPVSEYITP---EAFERYRALG 325 (334)
Q Consensus 262 l~tkTgiMVGl-G----ETdEE~~etl~~Lre~gvd~vtigqYl-rP~~~---h~~v~~yv~P---~~f~~~~~~a 325 (334)
+.++..+|+|+ | |+.+++.++++.+.+++ +.+.+.+.. +|... ...--.|-+| ...+.+++..
T Consensus 169 i~v~~~~i~G~P~~se~ea~ed~~~ti~~~~~l~-~~vs~~~l~v~~gT~l~~~~~~G~~~pp~lws~~e~l~e~~ 243 (313)
T TIGR01210 169 AGVKAYLLFKPPFLSEKEAIADMISSIRKCIPVT-DTVSINPTNVQKGTLVEFLWNRGLYRPPWLWSVAEVLKEAK 243 (313)
T ss_pred CcEEEEEEecCCCCChhhhHHHHHHHHHHHHhcC-CcEEEECCEEeCCCHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 99999999999 6 45577888999999999 999887653 56531 1111246677 6666676665
No 93
>COG1032 Fe-S oxidoreductase [Energy production and conversion]
Probab=99.12 E-value=4.9e-10 Score=111.33 Aligned_cols=167 Identities=23% Similarity=0.318 Sum_probs=113.3
Q ss_pred eEEEEeecCCCCCCCCCcccCCCCCCCCCCchhHHHHHHHHHHCCCcEEEEeeecCCCCCCch---HHHHHHHHHHHHhh
Q 019890 129 TATIMILGDTCTRGCRFCNVKTSRAPPPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQG---SGHFAQTVRKLKEL 205 (334)
Q Consensus 129 Tatfm~igdgCtr~C~FC~V~~~r~p~~ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~G---a~~fa~lIr~Ik~~ 205 (334)
....+.++-||+++|+||.++......+.+++.++++.+.+.+.|++.+.+.+.+.=++...+ ...+..+...+.+.
T Consensus 198 ~~~~ve~~RGCp~~C~FC~~~~~~~~r~~~~~~v~~ei~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~l~~~~~~~ 277 (490)
T COG1032 198 RAFSVETSRGCPRGCRFCSITKHFKYRRRRPERVVEEIKELIEEGGKRVVFFVDDIFLYGSPALNDEKRFELLSLELIER 277 (490)
T ss_pred eEEEEEeccCCCCCCCCCCCcccccccCCCHHHHHHHHHHHHHHhhhcCcccccceeecCCccccchhhcccchHHHHHH
Confidence 467788899999999999998631134678888888888777777777654333321111100 12222222222221
Q ss_pred C-----------CCCce-----eee---eccccccccccchhh-HHHHHHhhcCCCCCHHHHHH-HHHHHHHhCCCcceE
Q 019890 206 K-----------PNMLI-----EAL---VAKSGLNVFAHNIET-VEELQSAVRDHRANFKQSLD-VLMMAKDYVPAGTLT 264 (334)
Q Consensus 206 ~-----------P~i~v-----E~L---l~~ag~dv~~HnlET-v~~l~~~Vr~r~~tye~sL~-vL~~ak~~~p~Gl~t 264 (334)
. |.+.+ +.+ +..+|...+.--+|+ .+++.+.++ +..+.++.++ .++.+++. |+.+
T Consensus 278 ~~~~~~~~~~~~~~~r~d~~~~~~~~~~~~~~g~~~~~iG~Esgs~~~l~~~~-k~~~~~~~~~~a~~~~~~~---~~~~ 353 (490)
T COG1032 278 GLRKGCRVHISAPSLRADTVTDEELLKLLREAGLRRVYIGIESGSEELLKKIN-KGITTEEVLEEAVKIAKEH---GLRV 353 (490)
T ss_pred hcccCceeeeeccccCchhcCHHHHHHHHhhCCCcceEEeccCCCHHHHHHHh-CCCChHHHHHHHHHHHHhC---Ccee
Confidence 1 11111 111 555666666666786 689999999 7999999995 88888885 6789
Q ss_pred eeceEEec-CCCHHHHHHH---HHHHHHcCCc-EEeeccC
Q 019890 265 KTSIMLGC-GETPDQVVST---MEKVRAAGVD-VMTFGQY 299 (334)
Q Consensus 265 kTgiMVGl-GETdEE~~et---l~~Lre~gvd-~vtigqY 299 (334)
+.++|+|+ |||+||+.++ ++++++++.. .+.+..|
T Consensus 354 ~~~~i~G~pget~ed~~~t~~~~~~~~~~~~~~~~~~~~~ 393 (490)
T COG1032 354 KLYFIVGLPGETEEDVKETIELAKFIKKLGPKLYVSPSPF 393 (490)
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHHHhCccceEEEeee
Confidence 99999999 9999999999 8999999997 6666544
No 94
>TIGR01290 nifB nitrogenase cofactor biosynthesis protein NifB. This model describes NifB, a protein required for the biosynthesis of the iron-molybdenum (or iron-vanadium) cofactor used by the nitrogen-fixing enzyme nitrogenase. Archaeal homologs lack the most C-terminal region and score between the trusted and noise cutoffs of this model.
Probab=99.04 E-value=1.9e-08 Score=102.25 Aligned_cols=204 Identities=19% Similarity=0.228 Sum_probs=133.8
Q ss_pred cccccCCCCCcceEEEEeecCCCCCCCCCcccCCC-----CC---CCCCCchhHHHHHHHHHHC--CCcEEEEee-ecCC
Q 019890 117 GECWSGGETGTATATIMILGDTCTRGCRFCNVKTS-----RA---PPPPDPDEPTNVAEAIASW--GLDYVVITS-VDRD 185 (334)
Q Consensus 117 ~ec~~~~~~~~~Tatfm~igdgCtr~C~FC~V~~~-----r~---p~~ld~~Ep~~~A~av~~~--GlkeVVLTS-v~rd 185 (334)
.-||+...++..-+-.+-+..+|+-+|.||.-.+. +. ...++++|+.+.++.+... +++.|+|+| ++-
T Consensus 12 hpc~~~~~~~~~~r~~~~vt~~CNl~C~yC~~~~~~~~esrpg~~~~~Ltpee~~~~i~~v~~~~~~~~~V~iaG~GEP- 90 (442)
T TIGR01290 12 HPCYSVEAHHYFARMHLAVAPACNIQCNYCNRKYDCANESRPGVVSELLTPEQALRKARQVAAEIPQLSVVGIAGPGDP- 90 (442)
T ss_pred CCCCChhhccCcCEEEEecCCCCCCcCcCCCCCCCCCcCCCCccccccCCHHHHHHHHHHHHHhcCCCCEEEEecCCCc-
Confidence 35998765565667778899999999999986532 21 1247899999999888764 678899998 552
Q ss_pred CCCCchHHHHHHHHHHHHhhCCCCceeee------------eccccccccccchhh-----HHHHHHhhcCCC--C----
Q 019890 186 DLADQGSGHFAQTVRKLKELKPNMLIEAL------------VAKSGLNVFAHNIET-----VEELQSAVRDHR--A---- 242 (334)
Q Consensus 186 Dl~d~Ga~~fa~lIr~Ik~~~P~i~vE~L------------l~~ag~dv~~HnlET-----v~~l~~~Vr~r~--~---- 242 (334)
|-. .+...++++.+++..|++.+-+. |.+.|+|.+.--+.. -.++|+.|+.++ +
T Consensus 91 -Ll~--~e~~~~~l~~~~~~~~~i~i~lsTNG~~l~e~i~~L~~~gvd~V~islka~d~e~~~~Iy~~v~~~g~~~tG~~ 167 (442)
T TIGR01290 91 -LAN--IGKTFQTLELVARQLPDVKLCLSTNGLMLPEHVDRLVDLGVGHVTITINAIDPAVGEKIYPWVWYEGERYTGRE 167 (442)
T ss_pred -ccC--ccccHHHHHHHHHhcCCCeEEEECCCCCCHHHHHHHHHCCCCeEEEeccCCCHHHHhhcchhhccccccccCcc
Confidence 211 22345778888887777655443 556667655444443 344444443211 1
Q ss_pred ----CHHHHHHHHHHHHHhCCCcceEeeceEEecCCCHHHHHHHHHHHHHcCCcEEeeccCc-CCC-CCCCccc--ccCC
Q 019890 243 ----NFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYM-RPS-KRHMPVS--EYIT 314 (334)
Q Consensus 243 ----tye~sL~vL~~ak~~~p~Gl~tkTgiMVGlGETdEE~~etl~~Lre~gvd~vtigqYl-rP~-~~h~~v~--~yv~ 314 (334)
.+++.++-|+.+.+. |+.++--.++==|.+++|+.++.++++++|++.+.+-+|. .|. ...++.. +-.+
T Consensus 168 ~~~il~e~~l~~l~~l~~~---G~~v~v~~vlIpGiND~~i~~l~~~~~~lg~~~~nl~p~~~~p~~G~~~~~~~~~~ps 244 (442)
T TIGR01290 168 AADLLIERQLEGLEKLTER---GILVKVNSVLIPGINDEHLVEVSKQVKELGAFLHNVMPLISAPEHGTVYGLNGQREPD 244 (442)
T ss_pred hHHHHHHHHHHHHHHHHhC---CCeEEEEEEeeCCcCHHHHHHHHHHHHhCCCcEEEeecCCCccccCCccCcCCCCCcC
Confidence 155667888888775 4554443333335677999999999999999988888776 241 1122332 5568
Q ss_pred HHHHHHHHHHHHH
Q 019890 315 PEAFERYRALGME 327 (334)
Q Consensus 315 P~~f~~~~~~a~~ 327 (334)
+++.+.+++...+
T Consensus 245 ~e~l~~~~~~~~~ 257 (442)
T TIGR01290 245 PDELAALRDRLEM 257 (442)
T ss_pred HHHHHHHHHHHHh
Confidence 8888888876554
No 95
>TIGR02493 PFLA pyruvate formate-lyase 1-activating enzyme. An iron-sulfur protein with a radical-SAM domain (pfam04055). A single glycine residue in EC 2.3.1.54, formate C-acetyltransferase (formate-pyruvate lyase), is oxidized to the corresponding radical by transfer of H from its CH2 to AdoMet with concomitant cleavage of the latter. The reaction requires Fe2+. The first stage is reduction of the AdoMet to give methionine and the 5'-deoxyadenosin-5-yl radical, which then abstracts a hydrogen radical from the glycine residue.
Probab=98.97 E-value=6.2e-08 Score=89.05 Aligned_cols=187 Identities=12% Similarity=0.153 Sum_probs=120.0
Q ss_pred EEEeecCCCCCCCCCcccCCCC---CCCCCCchhHHHHHHHHHHCC---CcEEEEeeecCCCCCCchHHHHHHHHHHHHh
Q 019890 131 TIMILGDTCTRGCRFCNVKTSR---APPPPDPDEPTNVAEAIASWG---LDYVVITSVDRDDLADQGSGHFAQTVRKLKE 204 (334)
Q Consensus 131 tfm~igdgCtr~C~FC~V~~~r---~p~~ld~~Ep~~~A~av~~~G---lkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~ 204 (334)
.+++...+|+-+|.||..+... ....++++++.+.++.+...+ .+.|+++|+.- + -..+.+.++++.+++
T Consensus 17 ~~~v~~~gCnl~C~~C~~~~~~~~~~~~~~s~e~i~~~i~~~~~~~~~~~~~I~~~GGEP--l--l~~~~~~~li~~~~~ 92 (235)
T TIGR02493 17 RFVVFMQGCPLRCQYCHNPDTWDLKGGTEVTPEELIKEVGSYKDFFKASGGGVTFSGGEP--L--LQPEFLSELFKACKE 92 (235)
T ss_pred eEEEEECCCCCcCCCCCChhhccCCCCEECCHHHHHHHHHHhHHHHhcCCCeEEEeCccc--c--cCHHHHHHHHHHHHH
Confidence 4557788999999999865321 113478888888777665532 25799998763 2 223456689998887
Q ss_pred hCCCCceeee--------------eccccccccccchhhH-HHHHHhhcCCCCCHHHHHHHHHHHHHhCCCcceEeeceE
Q 019890 205 LKPNMLIEAL--------------VAKSGLNVFAHNIETV-EELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIM 269 (334)
Q Consensus 205 ~~P~i~vE~L--------------l~~ag~dv~~HnlETv-~~l~~~Vr~r~~tye~sL~vL~~ak~~~p~Gl~tkTgiM 269 (334)
. ++.+.+. +.+ ..|.+.-.++.. +..|.+++ +.++++.++.++.+++.... +.+.+-++
T Consensus 93 ~--g~~~~i~TNG~~~~~~~~~~~ll~-~~d~v~isl~~~~~~~~~~~~--g~~~~~v~~~i~~l~~~g~~-~~v~~vv~ 166 (235)
T TIGR02493 93 L--GIHTCLDTSGFLGGCTEAADELLE-YTDLVLLDIKHFNPEKYKKLT--GVSLQPTLDFAKYLAKRNKP-IWIRYVLV 166 (235)
T ss_pred C--CCCEEEEcCCCCCccHHHHHHHHH-hCCEEEEeCCCCCHHHHHHHH--CCCcHHHHHHHHHHHhCCCc-EEEEEeee
Confidence 4 3322221 111 233333445553 77888887 34899999999999986322 33444444
Q ss_pred EecCCCHHHHHHHHHHHHHcC-CcEEeeccCcCCCC-------CC--CcccccCCHHHHHHHHHHHHH
Q 019890 270 LGCGETPDQVVSTMEKVRAAG-VDVMTFGQYMRPSK-------RH--MPVSEYITPEAFERYRALGME 327 (334)
Q Consensus 270 VGlGETdEE~~etl~~Lre~g-vd~vtigqYlrP~~-------~h--~~v~~yv~P~~f~~~~~~a~~ 327 (334)
-|.-++.+|+.++.+++++++ +..+.+.+|-+-+. .. +.-.+-.+.++.++.++++++
T Consensus 167 ~~~~~n~~ei~~l~~~~~~l~~~~~~~~~p~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (235)
T TIGR02493 167 PGYTDSEEDIEALAEFVKTLPNVERVEVLPYHQLGVYKWEALGIEYPLEGVKPPNKEQLERAAEIFKE 234 (235)
T ss_pred CCcCCCHHHHHHHHHHHHhCCCCceEEecCCCcccHHHHHHcCCcCccCCCCCCCHHHHHHHHHHHhh
Confidence 455678899999999999999 67777776653221 11 122233567777788777764
No 96
>COG0635 HemN Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism]
Probab=98.96 E-value=2.2e-08 Score=100.98 Aligned_cols=168 Identities=16% Similarity=0.304 Sum_probs=121.0
Q ss_pred eEEEEeecCCCCCCCCCcccCCCCCCC--CCC--chhHHHHHHHHHHC-C----CcEEEEeeecCCCCCCchHHHHHHHH
Q 019890 129 TATIMILGDTCTRGCRFCNVKTSRAPP--PPD--PDEPTNVAEAIASW-G----LDYVVITSVDRDDLADQGSGHFAQTV 199 (334)
Q Consensus 129 Tatfm~igdgCtr~C~FC~V~~~r~p~--~ld--~~Ep~~~A~av~~~-G----lkeVVLTSv~rdDl~d~Ga~~fa~lI 199 (334)
..-|+=| --|.+.|.||.+.+.-... +.+ .+-+.++.+..... | ++.|-+=|++.-- -..+.+..++
T Consensus 35 ~slYiHi-PFC~~~C~YC~fn~~~~~~~~~~~~Y~~aL~~Ei~~~~~~~~~~~~v~ti~~GGGTPsl---L~~~~l~~ll 110 (416)
T COG0635 35 LSLYIHI-PFCVSKCPYCDFNSHVTKRGQPVDEYLDALLEEIELVAALLGGQREVKTIYFGGGTPSL---LSPEQLERLL 110 (416)
T ss_pred eEEEEEc-ccccccCCCCCCeeeccCCCChHHHHHHHHHHHHHHHHhhcCCCCeEEEEEECCCcccc---CCHHHHHHHH
Confidence 4445433 5899999999998633111 111 11122222222222 2 4444454444211 2356788888
Q ss_pred HHHHhhCC------CCceeee-----------eccccccccccchhhH-HHHHHhhcCCCCCHHHHHHHHHHHHHhCCCc
Q 019890 200 RKLKELKP------NMLIEAL-----------VAKSGLNVFAHNIETV-EELQSAVRDHRANFKQSLDVLMMAKDYVPAG 261 (334)
Q Consensus 200 r~Ik~~~P------~i~vE~L-----------l~~ag~dv~~HnlETv-~~l~~~Vr~r~~tye~sL~vL~~ak~~~p~G 261 (334)
..|++..+ ++++|+- ++++|++.+.-++++. +++.+.+. |.++.++..+.++.+++..-.
T Consensus 111 ~~l~~~~~~~~~~~EitiE~nP~~~~~e~~~~l~~~GvNRiSlGVQsf~~~~lk~lg-R~h~~~~~~~a~~~~~~~g~~- 188 (416)
T COG0635 111 KALRELFNDLDPDAEITIEANPGTVEAEKFKALKEAGVNRISLGVQSFNDEVLKALG-RIHDEEEAKEAVELARKAGFT- 188 (416)
T ss_pred HHHHHhcccCCCCceEEEEeCCCCCCHHHHHHHHHcCCCEEEeccccCCHHHHHHhc-CCCCHHHHHHHHHHHHHcCCC-
Confidence 88887663 2566664 8899999999999986 89999999 999999999999999996222
Q ss_pred ceEeeceEEec-CCCHHHHHHHHHHHHHcCCcEEeeccCc-CCC
Q 019890 262 TLTKTSIMLGC-GETPDQVVSTMEKVRAAGVDVMTFGQYM-RPS 303 (334)
Q Consensus 262 l~tkTgiMVGl-GETdEE~~etl~~Lre~gvd~vtigqYl-rP~ 303 (334)
.+.-|+|+|+ |+|.+++.++++.+.++++|+|++++|. -|.
T Consensus 189 -~in~DLIyglP~QT~~~~~~~l~~a~~l~pdhis~y~L~~~p~ 231 (416)
T COG0635 189 -SINIDLIYGLPGQTLESLKEDLEQALELGPDHLSLYSLAIEPG 231 (416)
T ss_pred -cEEEEeecCCCCCCHHHHHHHHHHHHhCCCCEEEEeeeecCCC
Confidence 5899999999 9999999999999999999999999994 454
No 97
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=98.95 E-value=4.8e-08 Score=95.52 Aligned_cols=156 Identities=17% Similarity=0.241 Sum_probs=117.6
Q ss_pred EEEEeecCCCCCCCCCcccCCCC--CCCCCCchhHHHHHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhCC
Q 019890 130 ATIMILGDTCTRGCRFCNVKTSR--APPPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKP 207 (334)
Q Consensus 130 atfm~igdgCtr~C~FC~V~~~r--~p~~ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~P 207 (334)
..++.+++.|+.+|.||..+... ....++.+++.++++.+.+.|+..|.+||+.-- +. .+|.++|+.+++.
T Consensus 8 ~l~ieiT~~CNl~C~~C~~~~~~~~~~~~l~~e~~~~ii~~~~~~g~~~v~~~GGEPl-l~----~~~~~ii~~~~~~-- 80 (358)
T TIGR02109 8 WLLAELTHRCPLQCPYCSNPLELARRKAELTTEEWTDVLTQAAELGVLQLHFSGGEPL-AR----PDLVELVAHARRL-- 80 (358)
T ss_pred EEEEeeccccCcCCCCCCCChhcccccCCCCHHHHHHHHHHHHhcCCcEEEEeCcccc-cc----ccHHHHHHHHHHc--
Confidence 44567899999999999875321 124588999999999999999999999998731 11 2467888888764
Q ss_pred CCceeee-------------eccccccccccchhhH-HHHHHhhcCCCCCHHHHHHHHHHHHHhCCCcceEeeceEEec-
Q 019890 208 NMLIEAL-------------VAKSGLNVFAHNIETV-EELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC- 272 (334)
Q Consensus 208 ~i~vE~L-------------l~~ag~dv~~HnlETv-~~l~~~Vr~r~~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGl- 272 (334)
++.+.+. +.++|++.+.--++.. +..+.+++....+|++.++.++.+++. |+.+ ++.+-+
T Consensus 81 g~~~~l~TNG~ll~~e~~~~L~~~g~~~v~iSldg~~~e~~d~~rg~~g~f~~v~~~i~~l~~~---g~~v--~v~~vv~ 155 (358)
T TIGR02109 81 GLYTNLITSGVGLTEARLDALADAGLDHVQLSFQGVDEALADRIAGYKNAFEQKLAMARAVKAA---GLPL--TLNFVIH 155 (358)
T ss_pred CCeEEEEeCCccCCHHHHHHHHhCCCCEEEEeCcCCCHHHHHHhcCCccHHHHHHHHHHHHHhC---CCce--EEEEEec
Confidence 2333332 5667787777777765 678888873345799999999999985 5543 444445
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEeec
Q 019890 273 GETPDQVVSTMEKVRAAGVDVMTFG 297 (334)
Q Consensus 273 GETdEE~~etl~~Lre~gvd~vtig 297 (334)
..+.+|+.+++++++++|++.+.+.
T Consensus 156 ~~N~~~l~~~~~~~~~lg~~~i~~~ 180 (358)
T TIGR02109 156 RHNIDQIPEIIELAIELGADRVELA 180 (358)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEEE
Confidence 8899999999999999999998774
No 98
>TIGR03470 HpnH hopanoid biosynthesis associated radical SAM protein HpnH. The sequences represented by this model are members of the radical SAM superfamily of enzymes (pfam04055). These enzymes utilize an iron-sulfur redox cluster and S-adenosylmethionine to carry out diverse radical mediated reactions. The members of this clade are frequently found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. The linkage between SHC and this radical SAM enzyme is strong; one is nearly always observed in the same genome where the other is found. A hopanoid biosynthesis locus was described in Zymomonas mobilis consisting of the genes HpnA-E and SHC (HpnF). Continuing past SHC are found a phosphorylase enzyme (ZMO0873, i.e. HpnG, TIGR03468) and this radical SAM enzyme (ZMO0874) which we name here HpnH. Granted, in Z. mobilis, HpnH is in a convergent orientation with respect to HpnA-G, but one gene beyond HpnH
Probab=98.87 E-value=1.6e-07 Score=91.35 Aligned_cols=178 Identities=17% Similarity=0.187 Sum_probs=114.5
Q ss_pred EEEEeecCCCCCCCCCcccCCCCCC---CCCCchhHHHHHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhC
Q 019890 130 ATIMILGDTCTRGCRFCNVKTSRAP---PPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELK 206 (334)
Q Consensus 130 atfm~igdgCtr~C~FC~V~~~r~p---~~ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~ 206 (334)
.-.+.+.+.|+-+|.||.......+ ..++.+++.+. +.+.|+..|.++|+.- |-. ..+.++|+.+++..
T Consensus 29 ~l~le~T~~CNL~C~~C~~~~~~~~~~~~~ls~ee~~~~---i~e~g~~~V~i~GGEP--LL~---pdl~eiv~~~~~~g 100 (318)
T TIGR03470 29 VLMLEPLFRCNLACAGCGKIQYPAEILKQRLSVEECLRA---VDECGAPVVSIPGGEP--LLH---PEIDEIVRGLVARK 100 (318)
T ss_pred EEEEecccccCcCCcCCCCCcCCCcccccCCCHHHHHHH---HHHcCCCEEEEeCccc--ccc---ccHHHHHHHHHHcC
Confidence 3446689999999999986432211 23566666554 4567999999999863 211 23678888887642
Q ss_pred CCCceeee------------eccccccccccchhhHHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCcceEeeceEEecCC
Q 019890 207 PNMLIEAL------------VAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGE 274 (334)
Q Consensus 207 P~i~vE~L------------l~~ag~dv~~HnlETv~~l~~~Vr~r~~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGlGE 274 (334)
..+.+. +.+++.+.+.-.++..+..+..++.+..+|++-++.|+.+++. |+.+.....|=-++
T Consensus 101 --~~v~l~TNG~ll~~~~~~l~~~~~~~i~VSLDG~~e~hd~~~~~~g~f~~~l~~I~~l~~~---G~~v~v~~tv~~~~ 175 (318)
T TIGR03470 101 --KFVYLCTNALLLEKKLDKFEPSPYLTFSVHLDGLREHHDASVCREGVFDRAVEAIREAKAR---GFRVTTNTTLFNDT 175 (318)
T ss_pred --CeEEEecCceehHHHHHHHHhCCCcEEEEEEecCchhhchhhcCCCcHHHHHHHHHHHHHC---CCcEEEEEEEeCCC
Confidence 333332 4444555454455655566665543568999999999999986 55554433332379
Q ss_pred CHHHHHHHHHHHHHcCCcEEeeccCcCCCCCCCcccccCCHHHHHHH
Q 019890 275 TPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMPVSEYITPEAFERY 321 (334)
Q Consensus 275 TdEE~~etl~~Lre~gvd~vtigqYlrP~~~h~~v~~yv~P~~f~~~ 321 (334)
+.+|+.+.+++++++|++.+.+.++.. -.+...-..++..+++.++
T Consensus 176 n~~ei~~~~~~~~~lGv~~i~i~p~~~-~~~a~~~~~~l~~~e~~~~ 221 (318)
T TIGR03470 176 DPEEVAEFFDYLTDLGVDGMTISPGYA-YEKAPDQDHFLGRRQTKKL 221 (318)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecCcc-cccccccccccCHHHHHHH
Confidence 999999999999999999988865431 1111112234566664443
No 99
>TIGR02495 NrdG2 anaerobic ribonucleoside-triphosphate reductase activating protein. This enzyme is a member of the radical-SAM family (pfam04055). It is often gene clustered with the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487) and presumably fulfills the identical function as NrdG which utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin) to produce a glycine-centered radical in NrdD.
Probab=98.86 E-value=1.3e-07 Score=84.38 Aligned_cols=152 Identities=14% Similarity=0.174 Sum_probs=102.9
Q ss_pred eEEEEeecCCCCCCCCCcccCCCCC---CCCCCchhHHHHHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhh
Q 019890 129 TATIMILGDTCTRGCRFCNVKTSRA---PPPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKEL 205 (334)
Q Consensus 129 Tatfm~igdgCtr~C~FC~V~~~r~---p~~ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~ 205 (334)
..++++.+++|+.+|+||..+.... ...++++++.+.++.. ...++.|.++|++. +- .. ++.++++.+++.
T Consensus 16 ~~~~~~~t~~Cnl~C~~C~~~~~~~~~~~~~~~~~~i~~~i~~~-~~~~~~i~~sGGEP--ll--~~-~l~~li~~~~~~ 89 (191)
T TIGR02495 16 KLAFTIFFQGCNLKCPYCHNPELIDREGSGEIEVEFLLEFLRSR-QGLIDGVVITGGEP--TL--QA-GLPDFLRKVREL 89 (191)
T ss_pred CeEEEEEcCCCCCCCCCCCCccccCCCCCCcCCHHHHHHHHHHh-cCCCCeEEEECCcc--cC--cH-hHHHHHHHHHHC
Confidence 5577777999999999998874211 1246777777776653 22478999999763 22 12 378888888774
Q ss_pred CCCCceeee-----------ecccc-ccccccchhhHHHHHHhhcCCCCCHH-HHHHHHHHHHHhCCCcceEeeceEEec
Q 019890 206 KPNMLIEAL-----------VAKSG-LNVFAHNIETVEELQSAVRDHRANFK-QSLDVLMMAKDYVPAGTLTKTSIMLGC 272 (334)
Q Consensus 206 ~P~i~vE~L-----------l~~ag-~dv~~HnlETv~~l~~~Vr~r~~tye-~sL~vL~~ak~~~p~Gl~tkTgiMVGl 272 (334)
++.+.+. +.++| ++.+.-.++..+..|..+......++ +.++.++.+++.... +.+.+.++=|.
T Consensus 90 --g~~v~i~TNg~~~~~l~~l~~~g~~~~v~isl~~~~~~~~~~~g~~~~~~~~~~~~i~~l~~~gi~-~~i~~~v~~~~ 166 (191)
T TIGR02495 90 --GFEVKLDTNGSNPRVLEELLEEGLVDYVAMDVKAPPEKYPELYGLEKNGSNNILKSLEILLRSGIP-FELRTTVHRGF 166 (191)
T ss_pred --CCeEEEEeCCCCHHHHHHHHhcCCCcEEEEeccCChHHHHHHHCCCCchHHHHHHHHHHHHHcCCC-EEEEEEEeCCC
Confidence 4433332 45556 46665555555555665542345665 888999999886433 56677777788
Q ss_pred CCCHHHHHHHHHHHHHcC
Q 019890 273 GETPDQVVSTMEKVRAAG 290 (334)
Q Consensus 273 GETdEE~~etl~~Lre~g 290 (334)
-. ++|+.+..+++++.+
T Consensus 167 ~~-~~ei~~~~~~l~~~~ 183 (191)
T TIGR02495 167 LD-EEDLAEIATRIKENG 183 (191)
T ss_pred CC-HHHHHHHHHHhccCC
Confidence 44 789999999999987
No 100
>PRK11145 pflA pyruvate formate lyase-activating enzyme 1; Provisional
Probab=98.83 E-value=2.3e-07 Score=86.14 Aligned_cols=188 Identities=11% Similarity=0.137 Sum_probs=121.4
Q ss_pred EEeecCCCCCCCCCcccCCCC---CCCCCCchhHHHHHHHHHHC---CCcEEEEeeecCCCCCCchHHHHHHHHHHHHhh
Q 019890 132 IMILGDTCTRGCRFCNVKTSR---APPPPDPDEPTNVAEAIASW---GLDYVVITSVDRDDLADQGSGHFAQTVRKLKEL 205 (334)
Q Consensus 132 fm~igdgCtr~C~FC~V~~~r---~p~~ld~~Ep~~~A~av~~~---GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~ 205 (334)
+++...||+-+|.||.-+... ....++++|+.+.++..... ..+.|++||+.- -.-.+.+.++++.+++.
T Consensus 23 ~~~f~~gCnl~C~~C~~~~~~~~~~~~~lt~eei~~~i~~~~~~~~~~~~~V~~sGGEP----ll~~~~~~~l~~~~k~~ 98 (246)
T PRK11145 23 FITFFQGCLMRCLYCHNRDTWDTHGGKEVTVEELMKEVVTYRHFMNASGGGVTASGGEA----ILQAEFVRDWFRACKKE 98 (246)
T ss_pred EEEEECCCCCcCCCCCCHHHCCCCCCeEcCHHHHHHHHHHhHHHHhcCCCeEEEeCccH----hcCHHHHHHHHHHHHHc
Confidence 335568999999999855321 12347888888877765432 335799998762 22234566889999874
Q ss_pred CCCCceeee----e------cc---ccccccccchhhH-HHHHHhhcCCCCCHHHHHHHHHHHHHhCCCcceEeeceEEe
Q 019890 206 KPNMLIEAL----V------AK---SGLNVFAHNIETV-EELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLG 271 (334)
Q Consensus 206 ~P~i~vE~L----l------~~---ag~dv~~HnlETv-~~l~~~Vr~r~~tye~sL~vL~~ak~~~p~Gl~tkTgiMVG 271 (334)
++.+-+. + .+ ...|.+.--++.. +..++.++ +.+.++.++.++.+++.... +.+.+-+|=|
T Consensus 99 --g~~i~l~TNG~~~~~~~~~~~ll~~~d~v~islk~~~~e~~~~~~--g~~~~~~l~~i~~l~~~g~~-v~i~~~li~g 173 (246)
T PRK11145 99 --GIHTCLDTNGFVRRYDPVIDELLDVTDLVMLDLKQMNDEIHQNLV--GVSNHRTLEFARYLAKRNQK-TWIRYVVVPG 173 (246)
T ss_pred --CCCEEEECCCCCCcchHHHHHHHHhCCEEEECCCcCChhhccccc--CCChHHHHHHHHHHHhCCCc-EEEEEEEECC
Confidence 3322221 0 01 1234333345554 66777777 24557788888888876444 6778888888
Q ss_pred cCCCHHHHHHHHHHHHHcC-CcEEeeccCcCCCCC-------CCccc--ccCCHHHHHHHHHHHHHh
Q 019890 272 CGETPDQVVSTMEKVRAAG-VDVMTFGQYMRPSKR-------HMPVS--EYITPEAFERYRALGMEM 328 (334)
Q Consensus 272 lGETdEE~~etl~~Lre~g-vd~vtigqYlrP~~~-------h~~v~--~yv~P~~f~~~~~~a~~~ 328 (334)
+.++++|+.++.++|++++ +..+.+-+|-++... ..++. +-.++++.+.+++++.+.
T Consensus 174 ~nd~~~ei~~l~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~~~ 240 (246)
T PRK11145 174 WTDDDDSAHRLGEFIKDMGNIEKIELLPYHELGKHKWEAMGEEYKLDGVKPPSKETMERVKGILEQY 240 (246)
T ss_pred CCCCHHHHHHHHHHHHhcCCcceEEEecCCccchhHHHHcCCcccccCCCCCCHHHHHHHHHHHHHc
Confidence 8889999999999999986 677777777654321 12222 346777787777777654
No 101
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=98.82 E-value=1.3e-07 Score=92.31 Aligned_cols=192 Identities=16% Similarity=0.235 Sum_probs=119.3
Q ss_pred CchhhhhccCCC--CCcccccCCCCCcceEEEEeecCCCCCCCCCcccCCCCCC---CCCCchhHHHHHHHHHHC-CCcE
Q 019890 103 KLHTVCEEAKCP--NLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRAP---PPPDPDEPTNVAEAIASW-GLDY 176 (334)
Q Consensus 103 ~L~Tvceea~cp--ni~ec~~~~~~~~~Tatfm~igdgCtr~C~FC~V~~~r~p---~~ld~~Ep~~~A~av~~~-Glke 176 (334)
....+.|+...| .+..-|- .+..+.++++|+-+|+||..+...++ ..++.+++.+..+.+++. |+.+
T Consensus 67 ~~dp~~e~~~~~~~gl~hkyp-------~rvll~vT~~C~~~Cr~C~r~~~~~~~~~~~l~~~e~~~~i~~i~~~~~I~~ 139 (321)
T TIGR03822 67 RADPIGDDAHSPVPGIVHRYP-------DRVLLKPVHVCPVYCRFCFRREMVGPEGLGVLSPAELDAAFAYIADHPEIWE 139 (321)
T ss_pred CCCCcccccCCCCCCcccCCC-------CEEEEEecCCCCCcCcCCCchhhcCCcccCcCCHHHHHHHHHHHHhCCCccE
Confidence 445666654444 2322233 34456679999999999987642221 235678888888888754 9999
Q ss_pred EEEeeecCCCCCCchHHHHHHHHHHHHhhCCCC---cee--------------ee--eccccccccccchhhHHHHHHhh
Q 019890 177 VVITSVDRDDLADQGSGHFAQTVRKLKELKPNM---LIE--------------AL--VAKSGLNVFAHNIETVEELQSAV 237 (334)
Q Consensus 177 VVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~P~i---~vE--------------~L--l~~ag~dv~~HnlETv~~l~~~V 237 (334)
|+|||++---+ ....+.++++.+++. |.+ .+. ++ +.++|..+ .-.++..
T Consensus 140 VilSGGDPl~~---~~~~L~~ll~~l~~i-~~v~~iri~Tr~~v~~p~rit~ell~~L~~~g~~v-~i~l~~~------- 207 (321)
T TIGR03822 140 VILTGGDPLVL---SPRRLGDIMARLAAI-DHVKIVRFHTRVPVADPARVTPALIAALKTSGKTV-YVALHAN------- 207 (321)
T ss_pred EEEeCCCcccC---CHHHHHHHHHHHHhC-CCccEEEEeCCCcccChhhcCHHHHHHHHHcCCcE-EEEecCC-------
Confidence 99999974212 235688889888863 432 111 01 33444221 1111110
Q ss_pred cCCCCCHHHHHHHHHHHHHhCCCcceEeec--eEEecCCCHHHHHHHHHHHHHcCCcEEeeccCc-CCCCCCCcccccCC
Q 019890 238 RDHRANFKQSLDVLMMAKDYVPAGTLTKTS--IMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYM-RPSKRHMPVSEYIT 314 (334)
Q Consensus 238 r~r~~tye~sL~vL~~ak~~~p~Gl~tkTg--iMVGlGETdEE~~etl~~Lre~gvd~vtigqYl-rP~~~h~~v~~yv~ 314 (334)
. .+.-+++.++.++.+++. |+.+..- ++=|.+++.+++.++++.+.++|++...++++. -|+..|+ .++
T Consensus 208 h-~~el~~~~~~ai~~L~~~---Gi~v~~q~vLl~gvNd~~~~l~~l~~~l~~~gv~pyyl~~~~p~~g~~~f----~~~ 279 (321)
T TIGR03822 208 H-ARELTAEARAACARLIDA---GIPMVSQSVLLRGVNDDPETLAALMRAFVECRIKPYYLHHLDLAPGTAHF----RVT 279 (321)
T ss_pred C-hhhcCHHHHHHHHHHHHc---CCEEEEEeeEeCCCCCCHHHHHHHHHHHHhcCCeeEEEEecCCCCCcccc----cCc
Confidence 0 111246778888888885 6766543 333889999999999999999999999998653 2333444 255
Q ss_pred HHHHHHH
Q 019890 315 PEAFERY 321 (334)
Q Consensus 315 P~~f~~~ 321 (334)
+++...+
T Consensus 280 ~~~~~~i 286 (321)
T TIGR03822 280 IEEGQAL 286 (321)
T ss_pred HHHHHHH
Confidence 5543333
No 102
>COG1242 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=98.82 E-value=7.2e-08 Score=92.22 Aligned_cols=67 Identities=22% Similarity=0.347 Sum_probs=60.3
Q ss_pred hhhH-HHHHHhhcCCCCCHHHHHHHHHHHHHhCCCcceEeeceEEec-CCCHHHHHHHHHHHHHcCCcEEeec
Q 019890 227 IETV-EELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC-GETPDQVVSTMEKVRAAGVDVMTFG 297 (334)
Q Consensus 227 lETv-~~l~~~Vr~r~~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGl-GETdEE~~etl~~Lre~gvd~vtig 297 (334)
++|+ .+-.+.++ |.++|..+.+.++++|+. |+.+++.+|+|| |||.+|+.+|++.+.++++|-|-|-
T Consensus 150 LQT~h~~Tlk~iN-RgHd~~~y~dav~r~rkr---gIkvc~HiI~GLPgE~~~~mleTak~v~~~~v~GIKlH 218 (312)
T COG1242 150 LQTAHDKTLKRIN-RGHDFACYVDAVKRLRKR---GIKVCTHLINGLPGETRDEMLETAKIVAELGVDGIKLH 218 (312)
T ss_pred cchhhHHHHHHHh-cccchHHHHHHHHHHHHc---CCeEEEEEeeCCCCCCHHHHHHHHHHHHhcCCceEEEE
Confidence 4554 67777888 899999999999999997 799999999999 9999999999999999999977664
No 103
>COG2896 MoaA Molybdenum cofactor biosynthesis enzyme [Coenzyme metabolism]
Probab=98.78 E-value=2.7e-07 Score=90.25 Aligned_cols=179 Identities=17% Similarity=0.302 Sum_probs=130.9
Q ss_pred eEEEE--eecCCCCCCCCCcccCC--CCCC--CCCCchhHHHHHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHH
Q 019890 129 TATIM--ILGDTCTRGCRFCNVKT--SRAP--PPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKL 202 (334)
Q Consensus 129 Tatfm--~igdgCtr~C~FC~V~~--~r~p--~~ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~I 202 (334)
...++ .+.|.|+-+|.||.-.- .-.| ..++++|+.++++++.+.|++-|-|||+..- + ..+|.++|+.|
T Consensus 9 ~~~~LRiSvTdrCNfrC~YCm~eg~~~~~~~~~~Ls~eei~~~~~~~~~~Gv~kvRlTGGEPl-l----R~dl~eIi~~l 83 (322)
T COG2896 9 PVRYLRISVTDRCNFRCTYCMPEGPLAFLPKEELLSLEEIRRLVRAFAELGVEKVRLTGGEPL-L----RKDLDEIIARL 83 (322)
T ss_pred EeceEEEEEecCcCCcccccCCCCCcccCcccccCCHHHHHHHHHHHHHcCcceEEEeCCCch-h----hcCHHHHHHHH
Confidence 45554 48899999999996553 1123 2578999999999999999999999998721 1 13477888888
Q ss_pred Hhh-CCCCcee----ee------eccccccccccchhhH-HHHHHhhcCCCCCHHHHHHHHHHHHHhCCCcce-EeeceE
Q 019890 203 KEL-KPNMLIE----AL------VAKSGLNVFAHNIETV-EELQSAVRDHRANFKQSLDVLMMAKDYVPAGTL-TKTSIM 269 (334)
Q Consensus 203 k~~-~P~i~vE----~L------l~~ag~dv~~HnlETv-~~l~~~Vr~r~~tye~sL~vL~~ak~~~p~Gl~-tkTgiM 269 (334)
++. ..++++- .| +++||++.+|-.++|. ++.|+.+. +...+++-++=++.|.+. |+. +|-...
T Consensus 84 ~~~~~~~islTTNG~~L~~~a~~Lk~AGl~rVNVSLDsld~e~f~~IT-~~~~~~~Vl~GI~~A~~~---Gl~pVKlN~V 159 (322)
T COG2896 84 ARLGIRDLSLTTNGVLLARRAADLKEAGLDRVNVSLDSLDPEKFRKIT-GRDRLDRVLEGIDAAVEA---GLTPVKLNTV 159 (322)
T ss_pred hhcccceEEEecchhhHHHHHHHHHHcCCcEEEeecccCCHHHHHHHh-CCCcHHHHHHHHHHHHHc---CCCceEEEEE
Confidence 764 1112221 11 9999999999999986 88999998 566799999999999986 674 666554
Q ss_pred EecCCCHHHHHHHHHHHHHcCCcEEeeccCcCCCC-CCCcccccCCHHH
Q 019890 270 LGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRPSK-RHMPVSEYITPEA 317 (334)
Q Consensus 270 VGlGETdEE~~etl~~Lre~gvd~vtigqYlrP~~-~h~~v~~yv~P~~ 317 (334)
|==|=.++|+.+.+++.++.|.+.=.| -||..+. .+.....|++-++
T Consensus 160 v~kgvNd~ei~~l~e~~~~~~~~lrfI-E~m~~g~~~~~~~~~~~~~~~ 207 (322)
T COG2896 160 LMKGVNDDEIEDLLEFAKERGAQLRFI-ELMPLGEGNSWRLDKYLSLDE 207 (322)
T ss_pred EecCCCHHHHHHHHHHHhhcCCceEEE-EEeecCcccchhhhccccHHH
Confidence 433689999999999999999965555 4886554 3333333555443
No 104
>PRK14455 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=98.71 E-value=1.5e-06 Score=86.24 Aligned_cols=189 Identities=10% Similarity=0.130 Sum_probs=117.9
Q ss_pred EEEeecCCCCCCCCCcccCCCCCCCCCCchhHHHHHHHHHH------CCCcEEEEee-ecCCCCCCchHHHHHHHHHHHH
Q 019890 131 TIMILGDTCTRGCRFCNVKTSRAPPPPDPDEPTNVAEAIAS------WGLDYVVITS-VDRDDLADQGSGHFAQTVRKLK 203 (334)
Q Consensus 131 tfm~igdgCtr~C~FC~V~~~r~p~~ld~~Ep~~~A~av~~------~GlkeVVLTS-v~rdDl~d~Ga~~fa~lIr~Ik 203 (334)
..+..+-||+.+|.||+-+.......++++|+.+++..+.. .|++.||++| +.. +- ..+.+.++++.++
T Consensus 111 ~ciSsqvGC~~~C~FC~t~~~~~~r~lt~~EIv~qv~~~~~~~~~~g~~v~~Vv~~GmGEP--Ll--n~~~v~~~l~~l~ 186 (356)
T PRK14455 111 VCVTTQVGCRIGCTFCASTLGGLKRDLEAGEIVAQVMLVQKYLDETEERVSHIVVMGIGEP--FD--NYDNVMDFLRIIN 186 (356)
T ss_pred EEEECCCCCCCCCCcCCCCCCCCCccCCHHHHHHHHHHHHHHHhhcCCCcceEEEeccccc--cC--CHHHHHHHHHHHh
Confidence 45667889999999998886443456899999998775432 3688999999 442 21 2346777788776
Q ss_pred hhC-C-----CCceeee--------eccccccc-cccchhhH-HHHHHhhcC--CCCCHHHHHHHHHHHHHhC-CCcceE
Q 019890 204 ELK-P-----NMLIEAL--------VAKSGLNV-FAHNIETV-EELQSAVRD--HRANFKQSLDVLMMAKDYV-PAGTLT 264 (334)
Q Consensus 204 ~~~-P-----~i~vE~L--------l~~ag~dv-~~HnlETv-~~l~~~Vr~--r~~tye~sL~vL~~ak~~~-p~Gl~t 264 (334)
+.. - .+.|+.- +.+.++++ +..-+++. +++++.+-+ ++++.++-++.++.+.+.. .. +.+
T Consensus 187 ~~~g~~~s~r~itvsT~G~~~~i~~l~d~~l~~~LaiSL~a~~~e~r~~l~pi~~~~~l~~Il~~l~~~~~~~~~~-v~i 265 (356)
T PRK14455 187 DDKGLAIGARHITVSTSGIAPKIYDFADEGLQINLAISLHAPNNELRSSLMPINRAYPLEKLMEAIEYYIEKTNRR-VTF 265 (356)
T ss_pred cccCcccCCCceEEEecCchHhHHHHHhcccCeeEEeccCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHhcCCe-EEE
Confidence 531 0 2233332 33444332 22334433 666665332 4678899999888776532 23 445
Q ss_pred eeceEEecCCCHHHHHHHHHHHHHcCCcEEeeccCcCCCCCCCcccccCCHHHHHHHHHHHHHh
Q 019890 265 KTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMPVSEYITPEAFERYRALGMEM 328 (334)
Q Consensus 265 kTgiMVGlGETdEE~~etl~~Lre~gvd~vtigqYlrP~~~h~~v~~yv~P~~f~~~~~~a~~~ 328 (334)
..-+|=|+.+++||+.++.++++++++ .|.+=+|..-. .+ +. +-.+++....+.++..+.
T Consensus 266 ey~lI~gvNDs~ed~~~La~ll~~l~~-~VnLIPynp~~-~~-ky-~~ps~e~l~~f~~~L~~~ 325 (356)
T PRK14455 266 EYILLGGVNDQVEHAEELADLLKGIKC-HVNLIPVNPVP-ER-DY-VRTPKEDIFAFEDTLKKN 325 (356)
T ss_pred EEEEeCCCCCCHHHHHHHHHHHhcCCC-cEEEEecCcCC-CC-CC-cCCCHHHHHHHHHHHHHC
Confidence 556666889999999999999999974 45544565321 11 11 114556666666666543
No 105
>COG2516 Biotin synthase-related enzyme [General function prediction only]
Probab=98.71 E-value=3.6e-07 Score=88.84 Aligned_cols=165 Identities=16% Similarity=0.310 Sum_probs=106.2
Q ss_pred eEEEEeec--CCCCCCCCCcccCCCCC--CCC--C-Cch-hHHHHH---HHHHH--CCCcEEEEeeecCCCCCCchHHHH
Q 019890 129 TATIMILG--DTCTRGCRFCNVKTSRA--PPP--P-DPD-EPTNVA---EAIAS--WGLDYVVITSVDRDDLADQGSGHF 195 (334)
Q Consensus 129 Tatfm~ig--dgCtr~C~FC~V~~~r~--p~~--l-d~~-Ep~~~A---~av~~--~GlkeVVLTSv~rdDl~d~Ga~~f 195 (334)
+-+|+... ++|+.+|+||.+..+.. |+. + ..+ +..++. +.+.. ..++.|+++-.+ ++... ..+
T Consensus 29 ~ta~l~t~~~~~c~~~ca~c~~ar~s~a~p~~~~lsRv~w~~v~l~~~~~~~~~~~g~~~rici~~i~---~p~~~-~d~ 104 (339)
T COG2516 29 TTAYLMTTYPGGCIADCAYCPQARSSTANPPKKVLSRVEWPAVALEEVLKRLFYDLGNFKRICIQQIA---YPRAL-NDL 104 (339)
T ss_pred ceeeeeeecCCceeechhhChhhhhcccCCCcceeeecccccchHHHHHhHhhhhhcccccccceeec---ccccc-chh
Confidence 55566656 89999999999986442 211 1 112 112222 22222 236778876665 33322 234
Q ss_pred HHHHHHHH-hhCCCCcee-ee-----------eccccccccccchhhH-HHHHHhhc-C--CCCCHHHHHHHHHHHHHhC
Q 019890 196 AQTVRKLK-ELKPNMLIE-AL-----------VAKSGLNVFAHNIETV-EELQSAVR-D--HRANFKQSLDVLMMAKDYV 258 (334)
Q Consensus 196 a~lIr~Ik-~~~P~i~vE-~L-----------l~~ag~dv~~HnlETv-~~l~~~Vr-~--r~~tye~sL~vL~~ak~~~ 258 (334)
..+++.++ ...-.++|. ++ ....|.|++.--++.+ +.+|+.|+ . ..++|++.++.|+++-+++
T Consensus 105 ~~i~~~~~~~~~~~itiseci~~~~~~~~l~e~~klg~d~l~V~~daa~~~~~e~v~~~s~s~~S~e~~~~~l~~~~~~~ 184 (339)
T COG2516 105 KLILERLHIRLGDPITISECITAVSLKEELEEYRKLGADYLGVAEDAANEELFEKVRKTSGSPHSWERYWEFLEKVAEAF 184 (339)
T ss_pred hhhhhhhhhccCCceehhhhhhcccchHHHHHHHhcchhhhhHHHHhcCHHHHHHHHhccCCCCcHHHHHHHHHHHHHHh
Confidence 55666665 221123332 22 4456667666666654 77888874 1 2367999999999999999
Q ss_pred CCcceEeeceEEecCCCHHHHHHHHHHHHHcCCcEEeeccC
Q 019890 259 PAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQY 299 (334)
Q Consensus 259 p~Gl~tkTgiMVGlGETdEE~~etl~~Lre~gvd~vtigqY 299 (334)
++ -.+..++|||+||+|.|+++++...+..|-- +++|.|
T Consensus 185 ~k-~rv~ihliVglGesD~~~ve~~~~v~~~g~~-v~Lfaf 223 (339)
T COG2516 185 GK-GRVGIHLIVGLGESDKDIVETIKRVRKRGGI-VSLFAF 223 (339)
T ss_pred cc-CCcceeEEeccCCchHHHHHHHHHHHhcCce-EEEEEe
Confidence 97 4799999999999999999999999998753 455544
No 106
>TIGR01211 ELP3 histone acetyltransferase, ELP3 family. The Saccharomyces cerevisiae member YPL086C has been characterized in vitro as an N-terminal acetyltransferase for all four core histones. It is a component of the RNA polymerase II holoenzyme, designated Elp3p for Elongator Protein 3. Members of this family are found in eukaryotes and archaea. These proteins are part of the larger set of GNAT acetyltransferases.
Probab=98.68 E-value=6.4e-07 Score=92.92 Aligned_cols=185 Identities=15% Similarity=0.251 Sum_probs=130.1
Q ss_pred cchHHHHHHHhhcCchhhhhccCCCCCcccccCCCCCcceEEEEeecCCCC-CCCCCccc-------CC---CCCCC---
Q 019890 90 DKYVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCT-RGCRFCNV-------KT---SRAPP--- 155 (334)
Q Consensus 90 ~~~~~~~~~l~~~~L~Tvceea~cpni~ec~~~~~~~~~Tatfm~igdgCt-r~C~FC~V-------~~---~r~p~--- 155 (334)
+....+..+|+..-..|. + |-++.|.|--=--|+ ..|-||-= |. +..|.
T Consensus 46 ~~~~~~~~~l~~kp~rt~-------------s----gv~~v~vm~~p~~cph~~c~~cp~~~~~~~~~~sy~~~ep~~~r 108 (522)
T TIGR01211 46 EEKKKLEPILRKKPVRTI-------------S----GVAVVAVMTSPHRCPHGKCLYCPGGPDSENSPQSYTGYEPAAMR 108 (522)
T ss_pred HHHHHHHHHHhcCCcccc-------------c----CeEEEEEecCCccCCCCceEeCCCCCCcCCCCcccCCCCcHhHH
Confidence 345667777776655554 1 234555554445688 46999852 11 11121
Q ss_pred ----C-CCchhHHHHHHHHHHCC--Cc--EEEEeeecCCCCCCchHHHHHHHHHHHHhhCCC------------------
Q 019890 156 ----P-PDPDEPTNVAEAIASWG--LD--YVVITSVDRDDLADQGSGHFAQTVRKLKELKPN------------------ 208 (334)
Q Consensus 156 ----~-ld~~Ep~~~A~av~~~G--lk--eVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~P~------------------ 208 (334)
. -+..++....+++...| ++ |+++-|++- .....++....|+.+.+..++
T Consensus 109 a~~~~~dpy~q~~~rl~~l~~~g~~~~kvE~i~~GGTf---t~l~~~y~~~fl~~~~~a~~~~~~~~~~~~~~~~~~~~n 185 (522)
T TIGR01211 109 GRQNDYDPYEQVTARLEQLEQIGHPVDKVELIIMGGTF---PARDLDYQEWFIKRCLNAMNGFDQELKGNSTLEEAIRIN 185 (522)
T ss_pred HHHcCCCcHHHHHHHHHHHHHhCCCCceEEEEEECCCc---ccCCHHHHHHHHHHHHHHhccccccccccchHHHHHHhh
Confidence 1 12356666777888877 33 447777763 333345555566655544322
Q ss_pred ---------Cceee----e-------eccccccccccchhhH-HHHHHhhcCCCCCHHHHHHHHHHHHHhCCCcceEeec
Q 019890 209 ---------MLIEA----L-------VAKSGLNVFAHNIETV-EELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTS 267 (334)
Q Consensus 209 ---------i~vE~----L-------l~~ag~dv~~HnlETv-~~l~~~Vr~r~~tye~sL~vL~~ak~~~p~Gl~tkTg 267 (334)
+++|. + +.+.|.+.+...+|+. +++++.|+ |+++.++.++.++.+|+. |+.+..+
T Consensus 186 e~a~~~~vgitiEtRPD~i~~e~L~~L~~~G~~rVslGVQS~~d~VL~~in-Rght~~~v~~Ai~~lr~~---G~~v~~~ 261 (522)
T TIGR01211 186 ETSKHRCVGLTIETRPDYCREEHIDRMLKLGATRVELGVQTIYNDILERTK-RGHTVRDVVEATRLLRDA---GLKVVYH 261 (522)
T ss_pred hcccCCeEEEEEEEcCCcCCHHHHHHHHHcCCCEEEEECccCCHHHHHHhC-CCCCHHHHHHHHHHHHHc---CCeEEEE
Confidence 22333 1 7888998899999985 89999999 899999999999999996 7999999
Q ss_pred eEEec-CCCHHHHHHHHHHHHH---cCCcEEeecc
Q 019890 268 IMLGC-GETPDQVVSTMEKVRA---AGVDVMTFGQ 298 (334)
Q Consensus 268 iMVGl-GETdEE~~etl~~Lre---~gvd~vtigq 298 (334)
+|+|| |||.+++.++++.+-+ +++|.+.+.+
T Consensus 262 LM~GLPgqt~e~~~~t~~~l~~~~~l~pD~Ikiyp 296 (522)
T TIGR01211 262 IMPGLPGSSFERDLEMFREIFEDPRFKPDMLKIYP 296 (522)
T ss_pred eecCCCCCCHHHHHHHHHHHHhccCCCcCEEEEec
Confidence 99999 9999999999999985 9999999987
No 107
>PRK14469 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=98.67 E-value=1.7e-06 Score=85.16 Aligned_cols=190 Identities=13% Similarity=0.152 Sum_probs=117.2
Q ss_pred eEEEEeecCCCCCCCCCcccCCCCCCCCCCchhHHHHHHHHHH---CCCcEEEEee-ecCCCCCCchHHHHHHHHHHHHh
Q 019890 129 TATIMILGDTCTRGCRFCNVKTSRAPPPPDPDEPTNVAEAIAS---WGLDYVVITS-VDRDDLADQGSGHFAQTVRKLKE 204 (334)
Q Consensus 129 Tatfm~igdgCtr~C~FC~V~~~r~p~~ld~~Ep~~~A~av~~---~GlkeVVLTS-v~rdDl~d~Ga~~fa~lIr~Ik~ 204 (334)
....+-.+.||+-+|.||.-....-...+..+|+.+.+..+.. .+++.||++| +.. -.-.+.+.+.|+.+++
T Consensus 101 ~t~cissq~GC~l~C~fC~tg~~g~~r~lt~~EI~~qv~~~~~~~~~~v~~Vvf~GmGEP----Lln~d~v~~~i~~l~~ 176 (343)
T PRK14469 101 ITACISTQVGCPVKCIFCATGQSGFVRNLTTGEIVSQILAMEKEEKKKVGNVVYMGMGEP----LLNYENVIKSIKILNH 176 (343)
T ss_pred eEEEEEecCCCCCcCcCCCCCCCCccccCCHHHHHHHHHHHHHhccCCcCeEEEEccChh----hhhHHHHHHHHHHHhc
Confidence 4456778899999999998543221235888999888765543 4689999999 542 1112345566666643
Q ss_pred hC-CCC---ceeee----------eccccccc-cccchhhH-HHHHHhhcC--CCCCHHHHHHHHHHHHHhCCCcceEee
Q 019890 205 LK-PNM---LIEAL----------VAKSGLNV-FAHNIETV-EELQSAVRD--HRANFKQSLDVLMMAKDYVPAGTLTKT 266 (334)
Q Consensus 205 ~~-P~i---~vE~L----------l~~ag~dv-~~HnlETv-~~l~~~Vr~--r~~tye~sL~vL~~ak~~~p~Gl~tkT 266 (334)
.. .++ .+.+- +.++++++ ++-.+... +..+..+.+ +++++++.++.++...+.....+.+..
T Consensus 177 ~~~~~~g~~~itisTnG~~~~i~~L~~~~l~~~LaiSL~a~~~e~r~~i~p~~~~~~l~~Il~~l~~~~~~~~~~v~i~y 256 (343)
T PRK14469 177 KKMKNIGIRRITISTVGIPEKIIQLAEEGLDVKLALSLHAPTNFKRDQIVPLNKKYSIEEIINAVKIYQKKTGNRVTIEY 256 (343)
T ss_pred hhcccCCCCeEEEECCCChHHHHHHHhhCCCcEEEEEeCCCCHHHHHhhcCcCCCCCHHHHHHHHHHHHHHhCCeEEEEE
Confidence 21 112 12111 66777774 55555543 566666532 468999999988876554222244555
Q ss_pred ceEEecCCCHHHHHHHHHHHHHcCCcEEeeccCcCCCCCCCcccccCCHHHHHHHHHHHHH
Q 019890 267 SIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMPVSEYITPEAFERYRALGME 327 (334)
Q Consensus 267 giMVGlGETdEE~~etl~~Lre~gvd~vtigqYlrP~~~h~~v~~yv~P~~f~~~~~~a~~ 327 (334)
-+|-|+..+++|+.++.++++.+++. |.+-+|-.... . .+-.++++.+.++++..+
T Consensus 257 vlI~g~NDs~ed~~~La~llk~~~~~-VnLIpynp~~~---~-~~~ps~e~l~~f~~~l~~ 312 (343)
T PRK14469 257 ILIKGFNDEIEDAKKLAELLKGLKVF-VNLIPVNPTVP---G-LEKPSRERIERFKEILLK 312 (343)
T ss_pred EEECCCCCCHHHHHHHHHHHhccCcE-EEEEecCCCCc---c-CCCCCHHHHHHHHHHHHH
Confidence 67778899999999999999998763 55555653211 1 112234555556555443
No 108
>PRK14456 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=98.64 E-value=2.6e-06 Score=84.97 Aligned_cols=189 Identities=15% Similarity=0.188 Sum_probs=119.3
Q ss_pred EEeecCCCCCCCCCcccCCCCCCCCCCchhHHHHHHHH--------HHCCCcEEEEee-ecCCCCCCchHHHHHHHHHHH
Q 019890 132 IMILGDTCTRGCRFCNVKTSRAPPPPDPDEPTNVAEAI--------ASWGLDYVVITS-VDRDDLADQGSGHFAQTVRKL 202 (334)
Q Consensus 132 fm~igdgCtr~C~FC~V~~~r~p~~ld~~Ep~~~A~av--------~~~GlkeVVLTS-v~rdDl~d~Ga~~fa~lIr~I 202 (334)
-+-.+.||+-+|.||.-....-...+..+|+.+++..+ ...|++.||++| +.. | ...+.+.+.|+.+
T Consensus 124 ciSsq~GCnl~C~FC~tg~~g~~rnLt~~EI~~qv~~~~~~~~~~~~~~~v~nIvfmGmGEP--L--ln~d~v~~~i~~l 199 (368)
T PRK14456 124 CISSQAGCALRCSFCATGQMGFRRNLTAGEITGQVFALSDMLAERNRERGITNIVFMGMGEP--L--LNTDNVFEAVLTL 199 (368)
T ss_pred EEEecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhhhccCCccEEEEeCcCcc--c--cCHHHHHHHHHHH
Confidence 34469999999999986543212358899998886443 235799999999 542 2 1234577888887
Q ss_pred HhhCC-------CCceeee--------ecccccc-ccccchhhH-HHHHHhhcC---CCCCHHHHHHHHHHHHHhCCCcc
Q 019890 203 KELKP-------NMLIEAL--------VAKSGLN-VFAHNIETV-EELQSAVRD---HRANFKQSLDVLMMAKDYVPAGT 262 (334)
Q Consensus 203 k~~~P-------~i~vE~L--------l~~ag~d-v~~HnlETv-~~l~~~Vr~---r~~tye~sL~vL~~ak~~~p~Gl 262 (334)
++..- .+++.-. +.++|++ .++--+.+. +..+..+.| +++.+++.++.++...+..+.-+
T Consensus 200 ~~~~~~~~is~r~ItisT~Gl~~~i~~L~~~gl~~~LaiSL~a~~~e~r~~i~P~~~~~~~l~~l~~~i~~~~~~~g~~V 279 (368)
T PRK14456 200 STRKYRFSISQRKITISTVGITPEIDRLATSGLKTKLAVSLHSADQEKRERLMPQAARDYPLDELREALIGYASKTGEPV 279 (368)
T ss_pred hccccccCcCcCeeEEECCCChHHHHHHHHcCCCceEEEEecCCCHHHHHHhccccCCCCCHHHHHHHHHHHHHhcCCeE
Confidence 75311 1112111 7788886 466666664 777777642 36789999998885433332214
Q ss_pred eEeeceEEecCCCHHHHHHHHHHHHHcCCcEEeeccCcCCCCCCCcccccCCHHHHHHHHHHHHHh
Q 019890 263 LTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMPVSEYITPEAFERYRALGMEM 328 (334)
Q Consensus 263 ~tkTgiMVGlGETdEE~~etl~~Lre~gvd~vtigqYlrP~~~h~~v~~yv~P~~f~~~~~~a~~~ 328 (334)
.+..-+|=|+-.+++|+.++.++++++.+ .|.+=+|.. ... .+- +-.+++..+.++++-.+.
T Consensus 280 ~ieyvLI~GvNDs~eda~~L~~~l~~~~~-~VnlIpyn~-~~~-~~~-~~ps~e~i~~F~~~L~~~ 341 (368)
T PRK14456 280 TLVYMLLEGINDSPEDARKLIRFASRFFC-KINLIDYNS-IVN-IKF-EPVCSSTRERFRDRLLDA 341 (368)
T ss_pred EEEEEEEcCCCCCHHHHHHHHHHHhcCCC-eeEEeeecc-CCC-CCC-CCCCHHHHHHHHHHHHHC
Confidence 56677788999999999999999999754 344445542 111 111 123445566666655544
No 109
>PRK14463 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=98.61 E-value=5e-06 Score=82.30 Aligned_cols=186 Identities=13% Similarity=0.187 Sum_probs=113.7
Q ss_pred eEEEEeecCCCCCCCCCcccCCCCCCCCCCchhHHHHHHHHHH-CCCcEEEEee-ecCCCCCCchHHHHHHHHHHHHhhC
Q 019890 129 TATIMILGDTCTRGCRFCNVKTSRAPPPPDPDEPTNVAEAIAS-WGLDYVVITS-VDRDDLADQGSGHFAQTVRKLKELK 206 (334)
Q Consensus 129 Tatfm~igdgCtr~C~FC~V~~~r~p~~ld~~Ep~~~A~av~~-~GlkeVVLTS-v~rdDl~d~Ga~~fa~lIr~Ik~~~ 206 (334)
....+-.+.||+.+|.||.-........++++|+.+.+..+.. .++++||++| +. .+. ++.++++.|+...
T Consensus 103 ~t~cvSsq~GC~~~C~FC~tg~~~~~r~lt~~EI~~qv~~~~~~~~i~~IvfmG~GE--Pl~-----n~~~vi~~l~~l~ 175 (349)
T PRK14463 103 NTLCISSQVGCAMGCAFCLTGTFRLTRNLTTAEIVNQVCAVKRDVPVRNIVFMGMGE--PLA-----NLDNVIPALQILT 175 (349)
T ss_pred cEEEEEecCCcCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHhcCCccEEEEecCCc--chh-----cHHHHHHHHHHhh
Confidence 4456778999999999997443211345899999987776543 4799999999 54 232 3444554444332
Q ss_pred --CCC-------ceeee-----ecccccc---ccccchhhH-HHHHHhhcC--CCCCHHHHHHHHHHHHHhCCCcceEee
Q 019890 207 --PNM-------LIEAL-----VAKSGLN---VFAHNIETV-EELQSAVRD--HRANFKQSLDVLMMAKDYVPAGTLTKT 266 (334)
Q Consensus 207 --P~i-------~vE~L-----l~~ag~d---v~~HnlETv-~~l~~~Vr~--r~~tye~sL~vL~~ak~~~p~Gl~tkT 266 (334)
.++ .|+.- +.+.+.+ .++..+++. +++++.+-| +++..++.++.++........-+.+..
T Consensus 176 ~~~gl~~s~r~itVsTnGl~~~i~~l~~~~~~~LaiSL~a~~~e~r~~I~pink~~~l~~l~~a~~~~~~~~~~~v~iey 255 (349)
T PRK14463 176 DPDGLQFSTRKVTVSTSGLVPEMEELGREVTVNLAVSLNATTDEVRDRIMPVNRRYPLAELLAACKAFPLPGRRKITIEY 255 (349)
T ss_pred cccccCcCCceEEEECCCchHHHHHHhhccCeEEEEeCCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 122 22211 2222222 122345554 777777632 467888888877766554322144455
Q ss_pred ceEEecCCCHHHHHHHHHHHHHcCCcEEeeccCcCCCCCCCccccc--CCHHHHHHHHHHHHH
Q 019890 267 SIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMPVSEY--ITPEAFERYRALGME 327 (334)
Q Consensus 267 giMVGlGETdEE~~etl~~Lre~gvd~vtigqYlrP~~~h~~v~~y--v~P~~f~~~~~~a~~ 327 (334)
-+|=|+.+++||+.++.++++++++ .|.+=+|-.... ..| .+++..+.++++..+
T Consensus 256 vLI~GvNDs~e~~~~L~~ll~~l~~-~vnlIPyn~~~~-----~~~~~ps~e~i~~f~~~L~~ 312 (349)
T PRK14463 256 VMIRGLNDSLEDAKRLVRLLSDIPS-KVNLIPFNEHEG-----CDFRSPTQEAIDRFHKYLLD 312 (349)
T ss_pred EEeCCCCCCHHHHHHHHHHHhccCc-eEEEEecCCCCC-----CCCCCCCHHHHHHHHHHHHH
Confidence 6666789999999999999999986 566666743221 233 344556666655543
No 110
>TIGR00238 KamA family protein. Note that the E. coli homolog was expressed in E. coli and purified and found not to display display lysine 2,3-aminomutase activity. Active site residues are found in 100 residue extension in B. subtilis. Name changed to KamA family protein.
Probab=98.57 E-value=3.5e-06 Score=82.64 Aligned_cols=156 Identities=12% Similarity=0.193 Sum_probs=102.0
Q ss_pred EEEEeecCCCCCCCCCcccCCCCCC-CCCCchhHHHHHHHHHH-CCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhCC
Q 019890 130 ATIMILGDTCTRGCRFCNVKTSRAP-PPPDPDEPTNVAEAIAS-WGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKP 207 (334)
Q Consensus 130 atfm~igdgCtr~C~FC~V~~~r~p-~~ld~~Ep~~~A~av~~-~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~P 207 (334)
..++.++++|+.+|+||..+..... .....+++.+..+.+.. .|+++|+|||++--.++| ..+.++++.|++. |
T Consensus 114 rvll~~T~gCn~~C~yC~~~~~~~~~~~~~~~~~~~~i~~i~~~~~i~eV~lsGGDPLl~~d---~~L~~ll~~L~~i-~ 189 (331)
T TIGR00238 114 RALFLVKGGCAVNCRYCFRRHFPYKENPGNKKKWQKALDYIAEHPEIIEILISGGDPLMAKD---HELEWLLKRLEEI-P 189 (331)
T ss_pred cEEEEeCCCCCCCCcCCCCCCcCCCCCCccHHHHHHHHHHHHhCCCcCEEEEECCccccCCH---HHHHHHHHHHHhc-C
Confidence 4567789999999999987543211 12236777777777765 589999999988533333 3477888888763 3
Q ss_pred CC-ceee----------------e--eccccccc-----cccchhhHHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCcce
Q 019890 208 NM-LIEA----------------L--VAKSGLNV-----FAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTL 263 (334)
Q Consensus 208 ~i-~vE~----------------L--l~~ag~dv-----~~HnlETv~~l~~~Vr~r~~tye~sL~vL~~ak~~~p~Gl~ 263 (334)
++ .+.+ + +.++|..+ ++|.- ...++..+.++++++..-. +.
T Consensus 190 ~~~~IRi~tr~~~~~P~rit~el~~~L~~~~~~~~~vsh~nh~~--------------Ei~~~~~~ai~~L~~aGi~-v~ 254 (331)
T TIGR00238 190 HLVRLRIGTRLPVVIPQRITDELCELLASFELQLMLVTHINHCN--------------EITEEFAEAMKKLRTVNVT-LL 254 (331)
T ss_pred CccEEEeecCCCccCchhcCHHHHHHHHhcCCcEEEEccCCChH--------------hCCHHHHHHHHHHHHcCCE-EE
Confidence 32 1111 1 33444332 22221 1235556777777775222 45
Q ss_pred EeeceEEecCCCHHHHHHHHHHHHHcCCcEEeeccCcCCCCC
Q 019890 264 TKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKR 305 (334)
Q Consensus 264 tkTgiMVGlGETdEE~~etl~~Lre~gvd~vtigqYlrP~~~ 305 (334)
+.|.++=|.-...+++.++++.|.++||.-..++++ .|...
T Consensus 255 ~qtvLl~gvnD~~~~l~~L~~~l~~~gV~pyyl~~~-~~~~g 295 (331)
T TIGR00238 255 NQSVLLRGVNDRAQILAKLSIALFKVGIIPYYLHYL-DKVQG 295 (331)
T ss_pred eecceECCcCCCHHHHHHHHHHHhhcCeecCeecCc-CCCCC
Confidence 688889999999999999999999999998888754 45544
No 111
>COG0535 Predicted Fe-S oxidoreductases [General function prediction only]
Probab=98.53 E-value=5.6e-06 Score=79.00 Aligned_cols=183 Identities=17% Similarity=0.289 Sum_probs=131.8
Q ss_pred EEEEeecCCCCCCCCCcccCCCCC-CCCCCchhHHHHHHHHHHCC-CcEEEEeeecCCCCCCchHHHHHHHHHHHHhhCC
Q 019890 130 ATIMILGDTCTRGCRFCNVKTSRA-PPPPDPDEPTNVAEAIASWG-LDYVVITSVDRDDLADQGSGHFAQTVRKLKELKP 207 (334)
Q Consensus 130 atfm~igdgCtr~C~FC~V~~~r~-p~~ld~~Ep~~~A~av~~~G-lkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~P 207 (334)
.-.+.++..|+-+|.||....... +..+..++..++...+.+.| ...+.++|++.- -. ..+.++++.+++. +
T Consensus 20 ~~~~~~t~~Cnl~C~~C~~~~~~~~~~el~~~~~~~~~~~~~~~g~~~~v~~~gGEPl--l~---~d~~ei~~~~~~~-~ 93 (347)
T COG0535 20 VVGIELTNRCNLACKHCYAEAGKKLPGELSTEEDLRVIDELAELGEIPVVIFTGGEPL--LR---PDLLEIVEYARKK-G 93 (347)
T ss_pred EEEEeeccccCCcCcccccccCCCCccccCHHHHHHHHHHHHHcCCeeEEEEeCCCcc--cc---ccHHHHHHHHhhc-C
Confidence 334458999999999998887653 46788899988888899999 777888888742 11 3466777777654 2
Q ss_pred CCce-----------eee--eccccccccccchhhH-HHHHHhhcCCCCCHHHHHHHHHHHHHhCCCcceEeeceEEec-
Q 019890 208 NMLI-----------EAL--VAKSGLNVFAHNIETV-EELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC- 272 (334)
Q Consensus 208 ~i~v-----------E~L--l~~ag~dv~~HnlETv-~~l~~~Vr~r~~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGl- 272 (334)
++.+ +.+ +.++|++.+...++.. +..+..++.....|+..++.++.+++. |+. ..+-+-+
T Consensus 94 ~~~~~~~TnG~~~~~~~~~~l~~~g~~~v~iSid~~~~e~hd~~rg~~g~~~~~~~~i~~~~~~---g~~--~~~~~~v~ 168 (347)
T COG0535 94 GIRVSLSTNGTLLTEEVLEKLKEAGLDYVSISLDGLDPETHDPIRGVKGVFKRAVEAIKNLKEA---GIL--VVINTTVT 168 (347)
T ss_pred CeEEEEeCCCccCCHHHHHHHHhcCCcEEEEEecCCChhhhhhhcCCCcHHHHHHHHHHHHHHc---CCe--eeEEEEEe
Confidence 2211 222 6778888888888865 566677775568899999999999975 554 3444444
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEeeccCcCCCCCCCcccccCCHHHHHHHHH
Q 019890 273 GETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMPVSEYITPEAFERYRA 323 (334)
Q Consensus 273 GETdEE~~etl~~Lre~gvd~vtigqYlrP~~~h~~v~~yv~P~~f~~~~~ 323 (334)
+.+.+|+.+..+.++++|++.+.+++++.............+|+..+.+..
T Consensus 169 ~~n~~~l~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 219 (347)
T COG0535 169 KINYDELPEIADLAAELGVDELNVFPLIPVGRGEENLELDLTPEEEELLLV 219 (347)
T ss_pred cCcHHHHHHHHHHHHHcCCCEEEEEEEeecccccccccccCCHHHHHHHHH
Confidence 889999999999999999998888877643332222677778876555443
No 112
>PRK13762 tRNA-modifying enzyme; Provisional
Probab=98.52 E-value=4.6e-06 Score=81.65 Aligned_cols=181 Identities=13% Similarity=0.175 Sum_probs=112.6
Q ss_pred CCCCCCCCcccCCCCC-------CCCCCchhHHHHHHHHHH---C---C--------------CcEEEEeeecCCCCCCc
Q 019890 138 TCTRGCRFCNVKTSRA-------PPPPDPDEPTNVAEAIAS---W---G--------------LDYVVITSVDRDDLADQ 190 (334)
Q Consensus 138 gCtr~C~FC~V~~~r~-------p~~ld~~Ep~~~A~av~~---~---G--------------lkeVVLTSv~rdDl~d~ 190 (334)
+|+.+|.||.-+.... ....+++|+.+.+..... . | .+++.|++.. . |-.
T Consensus 67 ~C~~rC~fC~r~~~~~~~~~~~~~~~~~peeiv~~~~~~~~~~i~g~~g~~~v~~~~~~ea~~~~~v~iSl~G-E--PlL 143 (322)
T PRK13762 67 WCNQRCLFCWRPLEEDVGLELKEPEWDDPEEIVEESIKEQRKLLSGYKGNPKVDREKFEEAMEPKHVAISLSG-E--PTL 143 (322)
T ss_pred HHhccCceeeccCCCCcccccCCCCCCCHHHHHHHHHHHHHHHhhccCCCCCCCHHHhhhccCCCEEEEeCCc-c--ccc
Confidence 6999999998775432 113456676666644311 1 3 3568887542 1 211
Q ss_pred hHHHHHHHHHHHHhhCCCCceeee-----------eccccccccccchhhH-HHHHHhhcC--CCCCHHHHHHHHHHHHH
Q 019890 191 GSGHFAQTVRKLKELKPNMLIEAL-----------VAKSGLNVFAHNIETV-EELQSAVRD--HRANFKQSLDVLMMAKD 256 (334)
Q Consensus 191 Ga~~fa~lIr~Ik~~~P~i~vE~L-----------l~~ag~dv~~HnlETv-~~l~~~Vr~--r~~tye~sL~vL~~ak~ 256 (334)
..+|.++++.+++. ++++-+. + ++++|.+.--++.. +..|+.++. ....+++.++.|+.+++
T Consensus 144 -~p~l~eli~~~k~~--Gi~~~L~TNG~~~e~l~~L-~~~~d~i~VSLda~~~e~~~~i~~~~~~~~~~~vl~~L~~l~~ 219 (322)
T PRK13762 144 -YPYLPELIEEFHKR--GFTTFLVTNGTRPDVLEKL-EEEPTQLYVSLDAPDEETYKKINRPVIPDAWERILETLELLPS 219 (322)
T ss_pred -hhhHHHHHHHHHHc--CCCEEEECCCCCHHHHHHH-HhcCCEEEEEccCCCHHHHHHHhCCCCCCcHHHHHHHHHHHHh
Confidence 13688999999875 4444333 3 44566555556654 788888862 13689999999999998
Q ss_pred hCCCcceEeeceEEecCCCHHHHHHHHHHHHHcCCcEEeeccCcCCCCC--CCcccccCCHHHHHHHHHHHHHh
Q 019890 257 YVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKR--HMPVSEYITPEAFERYRALGMEM 328 (334)
Q Consensus 257 ~~p~Gl~tkTgiMVGlGETdEE~~etl~~Lre~gvd~vtigqYlrP~~~--h~~v~~yv~P~~f~~~~~~a~~~ 328 (334)
..-. +.+.+.++-|+ ++.|..+..+++++++++.+-+-+|+.-+.. .+......++++...+.+...+.
T Consensus 220 ~~~~-~~ir~tlv~g~--Nd~e~~~~a~l~~~~~~~~Iel~~y~~~G~~k~~l~~~~~p~~eev~~~~~~l~~~ 290 (322)
T PRK13762 220 KKTR-TVIRITLVKGY--NMHDPEGFAKLIERANPDFVEVKAYMHVGYSRNRLTRDNMPSHEEVREFAKELAEY 290 (322)
T ss_pred CCCC-EEEEEEEECCc--CccHHHHHHHHHHHcCCCEEEEECCeECCCccccccccCCcCHHHHHHHHHHHHHh
Confidence 6322 45566665555 4444448888899999999999888743321 22233456666666655544433
No 113
>TIGR00048 radical SAM enzyme, Cfr family. A Staphylococcus sciuri plasmid-borne member of this family, Cfr, has been identified as essential to transferrable resistance to chloramphenicol and florfenicol by an unknown mechanism. A 14-15 residue cluster with four perfectly conserved Cys residues suggests this protein may be an enzyme with an iron-sulfur cluster. The Cys cluster is part of the radical SAM domain, suggested to provide a general mechanism by which the Fe-S center cleaves S-adenosylmethionine to initiate radical-based catalysis. Members of this family lack apparent transmembrane domains.
Probab=98.51 E-value=8.2e-06 Score=80.96 Aligned_cols=186 Identities=13% Similarity=0.174 Sum_probs=110.8
Q ss_pred EEEeecCCCCCCCCCcccCCCCCCCCCCchhHHHHHHHHHH------CCCcEEEEee-ecCCCCCCchHHHHHHHHHHHH
Q 019890 131 TIMILGDTCTRGCRFCNVKTSRAPPPPDPDEPTNVAEAIAS------WGLDYVVITS-VDRDDLADQGSGHFAQTVRKLK 203 (334)
Q Consensus 131 tfm~igdgCtr~C~FC~V~~~r~p~~ld~~Ep~~~A~av~~------~GlkeVVLTS-v~rdDl~d~Ga~~fa~lIr~Ik 203 (334)
..|.-+.||+-+|.||+-........+..+|+.+.+..+.. .+++.||+.| +. |-...+.+.+.++.++
T Consensus 107 ~cVSsQ~GC~l~C~fC~t~~~g~~r~lt~~Eiv~qv~~~~~~~~~~~~~v~nVvfmGmGE----PLln~d~v~~~l~~l~ 182 (355)
T TIGR00048 107 VCVSSQVGCALGCTFCATAKGGFNRNLEASEIIGQVLRVQKINNETGERVSNVVFMGMGE----PLLNLNEVVKAMEIMN 182 (355)
T ss_pred EEEecCCCCCCcCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhhhcCCCeeEEEEecCCc----hhhCHHHHHHHHHHhh
Confidence 45667789999999998765322345889999987765533 2578899999 44 2212344556666665
Q ss_pred hhCC------CCceeee--------eccccccc-cccchhhH-HHHHHhhcC--CCCCHHHHHHHHHHHHHhCCCcceEe
Q 019890 204 ELKP------NMLIEAL--------VAKSGLNV-FAHNIETV-EELQSAVRD--HRANFKQSLDVLMMAKDYVPAGTLTK 265 (334)
Q Consensus 204 ~~~P------~i~vE~L--------l~~ag~dv-~~HnlETv-~~l~~~Vr~--r~~tye~sL~vL~~ak~~~p~Gl~tk 265 (334)
+... .++|+.- +.+.++++ ++--+... +..++.+.| +++.+++-++.++...+....-+.+.
T Consensus 183 ~~~g~~i~~~~itisT~G~~~~i~~l~~~~l~~~LaiSL~a~~~e~r~~l~p~~~~~~l~~ll~~l~~~~~~~g~~Vtie 262 (355)
T TIGR00048 183 DDFGLGISKRRITISTSGVVPKIDILADKMLQVALAISLHAPNDELRSSLMPINKKYNIETLLAAVRRYLNKTGRRVTFE 262 (355)
T ss_pred cccccCcCCCeEEEECCCchHHHHHHHHhCCCcEEEEEeCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHHhCCEEEEE
Confidence 4221 1222221 55556653 33333333 566665532 45778888877765433222224556
Q ss_pred eceEEecCCCHHHHHHHHHHHHHcCCcEEeeccCcCCCCCCCccccc--CCHHHHHHHHHHHH
Q 019890 266 TSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMPVSEY--ITPEAFERYRALGM 326 (334)
Q Consensus 266 TgiMVGlGETdEE~~etl~~Lre~gvd~vtigqYlrP~~~h~~v~~y--v~P~~f~~~~~~a~ 326 (334)
--+|=|+-.++||+.++.++|+.+++ .|.+-+|..- +...| .++++.+.++++-.
T Consensus 263 yvLI~GvNDs~e~a~~La~llk~l~~-~VnLIPynp~-----~~~~~~~ps~e~i~~f~~~L~ 319 (355)
T TIGR00048 263 YVLLDGVNDQVEHAEELAELLKGTKC-KVNLIPWNPF-----PEADYERPSNEQIDRFAKTLM 319 (355)
T ss_pred EEEECCCCCCHHHHHHHHHHHhcCCC-ceEEEecccC-----CCCCCCCCCHHHHHHHHHHHH
Confidence 66666899999999999999999865 3444445421 11223 34455555555443
No 114
>PRK14466 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=98.51 E-value=1.2e-05 Score=79.62 Aligned_cols=188 Identities=11% Similarity=0.095 Sum_probs=114.3
Q ss_pred eEEEEeecCCCCCCCCCcccCCCCCCCCCCchhHHHHHHHHHHC-CCcEEEEee-ecCCCCCCchHHHHHHHHHHHHhhC
Q 019890 129 TATIMILGDTCTRGCRFCNVKTSRAPPPPDPDEPTNVAEAIASW-GLDYVVITS-VDRDDLADQGSGHFAQTVRKLKELK 206 (334)
Q Consensus 129 Tatfm~igdgCtr~C~FC~V~~~r~p~~ld~~Ep~~~A~av~~~-GlkeVVLTS-v~rdDl~d~Ga~~fa~lIr~Ik~~~ 206 (334)
..-++-.+.||+-+|.||.-........++.+|+..++..+.+. ++++||++| +.. + ...+.+.+.|+.|+...
T Consensus 103 ~t~cvSsQvGC~~~C~FC~Tg~~g~~rnLt~~EIl~Qv~~~~~~~~i~nIvfmGmGEP--L--~N~d~vi~al~~l~~~~ 178 (345)
T PRK14466 103 ATLCVSSQVGCKMNCLFCMTGKQGFTGNLTAAQILNQIYSLPERDKLTNLVFMGMGEP--L--DNLDEVLKALEILTAPY 178 (345)
T ss_pred eEEEEEcCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHhhhhcCCCCeEEEeeeCcC--c--ccHHHHHHHHHHHhhcc
Confidence 45567788999999999995543223458999999999887543 699999999 552 2 12234444444443321
Q ss_pred -C-----CCceeee--------eccccccccccchhh-HHHHHHhhcC--CCCCHHHHHHHHHHHHHhCCCcceEeeceE
Q 019890 207 -P-----NMLIEAL--------VAKSGLNVFAHNIET-VEELQSAVRD--HRANFKQSLDVLMMAKDYVPAGTLTKTSIM 269 (334)
Q Consensus 207 -P-----~i~vE~L--------l~~ag~dv~~HnlET-v~~l~~~Vr~--r~~tye~sL~vL~~ak~~~p~Gl~tkTgiM 269 (334)
. .++|+.. +.+...-.++--+.+ .+.+++++-| +++..++-++.++...+....-+.+---+|
T Consensus 179 g~~~s~r~ItVsT~G~~~~i~~l~~~~~~~LavSLha~~~e~R~~i~P~~~~~~l~~l~~al~~y~~~~~rri~~Ey~Li 258 (345)
T PRK14466 179 GYGWSPKRITVSTVGLKKGLKRFLEESECHLAISLHSPFPEQRRELMPAEKAFSIKEIIDLLKNYDFSKQRRVSFEYIVF 258 (345)
T ss_pred ccCcCCceEEEEcCCCchHHHHHhhccCcEEEEEcCCCCHHHHHHhcCCccCCCHHHHHHHHHHHHHhhCCEEEEEEEEe
Confidence 1 1222221 112111111222332 2566666653 356778888888876554333244455666
Q ss_pred EecCCCHHHHHHHHHHHHHcCCcEEeeccCc-CCCCCCCcccccCCHHHHHHHHHHH
Q 019890 270 LGCGETPDQVVSTMEKVRAAGVDVMTFGQYM-RPSKRHMPVSEYITPEAFERYRALG 325 (334)
Q Consensus 270 VGlGETdEE~~etl~~Lre~gvd~vtigqYl-rP~~~h~~v~~yv~P~~f~~~~~~a 325 (334)
=|+..++||..++.+.|+.++ ..|.+-+|. .|.. + .+-.+.+..+.++++-
T Consensus 259 ~gvND~~e~a~~L~~ll~~~~-~~VNLIp~Np~~~~---~-~~~~s~~~~~~F~~~L 310 (345)
T PRK14466 259 KGLNDSLKHAKELVKLLRGID-CRVNLIRFHAIPGV---D-LEGSDMARMEAFRDYL 310 (345)
T ss_pred CCCCCCHHHHHHHHHHHcCCC-ceEEEEecCCCCCC---C-CcCCCHHHHHHHHHHH
Confidence 689999999999999999998 567887787 3432 2 2234455555555543
No 115
>PRK14460 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=98.47 E-value=1e-05 Score=80.24 Aligned_cols=187 Identities=14% Similarity=0.157 Sum_probs=111.3
Q ss_pred EEeecCCCCCCCCCcccCCCCCCCCCCchhHHHHHHHHHH----C--C---CcEEEEee-ecCCCCCCchHHHHHHHHHH
Q 019890 132 IMILGDTCTRGCRFCNVKTSRAPPPPDPDEPTNVAEAIAS----W--G---LDYVVITS-VDRDDLADQGSGHFAQTVRK 201 (334)
Q Consensus 132 fm~igdgCtr~C~FC~V~~~r~p~~ld~~Ep~~~A~av~~----~--G---lkeVVLTS-v~rdDl~d~Ga~~fa~lIr~ 201 (334)
-+.-+.||+.+|.||.-+...-...++++|+.+++..+.. . | ++.||++| +.. | ...+.+.+.|+.
T Consensus 105 CvSsq~GC~~~C~FC~tg~~g~~rnlt~~EI~~qv~~~~~~~~~~g~g~~~i~nIvfmGmGEP--L--ln~~~v~~~l~~ 180 (354)
T PRK14460 105 CLSCQVGCAMGCTFCSTGTMGFERNMTMGEILGQVLVAREHLGDNGPDHPILRNLVFMGMGEP--L--LNLDEVMRSLRT 180 (354)
T ss_pred EeeCCCCcCCCCccCCCCCCCCCcCCCHHHHHHHHHHHHHHHhhccCCCcceeEEEEecCCcc--c--CCHHHHHHHHHH
Confidence 4556899999999997543211236899999998854322 2 3 78999999 542 2 123455566666
Q ss_pred HHhhCCCCc-----eeee----------eccccccccccchhhH-HHHHHhhcC--CCCCHHHHHHHHHHHHHhCCCcce
Q 019890 202 LKELKPNML-----IEAL----------VAKSGLNVFAHNIETV-EELQSAVRD--HRANFKQSLDVLMMAKDYVPAGTL 263 (334)
Q Consensus 202 Ik~~~P~i~-----vE~L----------l~~ag~dv~~HnlETv-~~l~~~Vr~--r~~tye~sL~vL~~ak~~~p~Gl~ 263 (334)
+++.. ++. +-+. |.++++..++--+++. +..++++-+ +.+..++.++.++........-+.
T Consensus 181 l~~~~-Gl~~~~r~itvsT~G~~~~i~~L~~~~l~~L~iSLha~~~e~r~~i~p~~~~~~l~~ll~al~~~~~~~~~~v~ 259 (354)
T PRK14460 181 LNNEK-GLNFSPRRITVSTCGIEKGLRELGESGLAFLAVSLHAPNQELRERIMPKAARWPLDDLIAALKSYPLKTRERVT 259 (354)
T ss_pred Hhhhh-ccCCCCCeEEEECCCChHHHHHHHhCCCcEEEEeCCCCCHHHHHHhcCccccCCHHHHHHHHHHHHHhcCCeEE
Confidence 65421 221 2221 5555553343334443 777777753 235777777766644322211255
Q ss_pred EeeceEEecCCCHHHHHHHHHHHHHcCCcEEeeccCcCCCCCCCcccccCCHHHHHHHHHHHHH
Q 019890 264 TKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMPVSEYITPEAFERYRALGME 327 (334)
Q Consensus 264 tkTgiMVGlGETdEE~~etl~~Lre~gvd~vtigqYlrP~~~h~~v~~yv~P~~f~~~~~~a~~ 327 (334)
+..-+|=|+.+++||+.++.++++.+++ .|.+=+|.+... .+ .+-.++++.+.++++..+
T Consensus 260 iey~LI~GvNDs~ed~~~l~~~l~~~~~-~VnLIpyn~~~g--~~-y~~p~~e~v~~f~~~l~~ 319 (354)
T PRK14460 260 FEYLLLGGVNDSLEHARELVRLLSRTKC-KLNLIVYNPAEG--LP-YSAPTEERILAFEKYLWS 319 (354)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhcCCC-cEEEEcCCCCCC--CC-CCCCCHHHHHHHHHHHHH
Confidence 6677777999999999999999999975 344445553111 11 123455556666665543
No 116
>PRK14470 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=98.46 E-value=2.5e-05 Score=77.05 Aligned_cols=184 Identities=9% Similarity=0.024 Sum_probs=115.2
Q ss_pred EEeecCCCCCCCCCcccCCCCCCCCCCchhHHHHHHHHHHC---CCcEEEEee-ecCCCCCCchHHHHHHHHHHHHhhC-
Q 019890 132 IMILGDTCTRGCRFCNVKTSRAPPPPDPDEPTNVAEAIASW---GLDYVVITS-VDRDDLADQGSGHFAQTVRKLKELK- 206 (334)
Q Consensus 132 fm~igdgCtr~C~FC~V~~~r~p~~ld~~Ep~~~A~av~~~---GlkeVVLTS-v~rdDl~d~Ga~~fa~lIr~Ik~~~- 206 (334)
.+--+.||+-+|.||.-....-...+.+.|+.+.+..+.+. .++.||++| |.. -...+.+.++++.|++..
T Consensus 100 cvSsq~GC~l~C~fC~tg~~g~~r~l~~~EI~~qi~~~~~~~~~~i~nIvfmGmGEP----llN~d~v~~~i~~l~~~~~ 175 (336)
T PRK14470 100 CLSSQAGCALGCAFCATGKLGLDRSLRSWEIVAQLLAVRADSERPITGVVFMGQGEP----FLNYDEVLRAAYALCDPAG 175 (336)
T ss_pred EEeCCCCcCCCCccccCCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCEEEEEecCcc----ccCHHHHHHHHHHHhCccc
Confidence 45567899999999988753212357788888777665443 589999999 542 222345666777776421
Q ss_pred ---CCCceeee----------eccccc-cccccchhhH-HHHHHhhcC--CCCCHHHHHHHHHHHHHhCCCcceEeeceE
Q 019890 207 ---PNMLIEAL----------VAKSGL-NVFAHNIETV-EELQSAVRD--HRANFKQSLDVLMMAKDYVPAGTLTKTSIM 269 (334)
Q Consensus 207 ---P~i~vE~L----------l~~ag~-dv~~HnlETv-~~l~~~Vr~--r~~tye~sL~vL~~ak~~~p~Gl~tkTgiM 269 (334)
++..|.+. +.+.++ +.++--+.+. +..+.++.+ +++++++.++.++...+.... +.+.--+|
T Consensus 176 ~~~~~~~ItVsTnG~~p~i~~l~~~~~~~~LaiSLhA~~~e~r~~I~p~~~~~~le~il~ai~~~~~~~rr-i~ieyvLI 254 (336)
T PRK14470 176 ARIDGRRISISTAGVVPMIRRYTAEGHKFRLCISLNAAIPWKRRALMPIEQGFPLDELVEAIREHAALRGR-VTLEYVMI 254 (336)
T ss_pred cccCCCceEEEecCChHHHHHHHhcCCCceEEEecCCCCHHHHHHhcCccccCCHHHHHHHHHHHHHhCCC-eEEEEEEE
Confidence 22233332 333343 3344445543 667766653 257899999999988876333 55566778
Q ss_pred EecCCCHHHHHHHHHHHHHcCCcEEeeccCcCCCCCCCcccccCCHHHHHHHHHHH
Q 019890 270 LGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMPVSEYITPEAFERYRALG 325 (334)
Q Consensus 270 VGlGETdEE~~etl~~Lre~gvd~vtigqYlrP~~~h~~v~~yv~P~~f~~~~~~a 325 (334)
-|+..++||+.++.++++.+.+. +.+-+|..|.. .+ +=.+.++.+.+.++-
T Consensus 255 ~GvNDseeda~~La~llk~l~~~-vnlI~~N~~~~---~~-~~p~~~~i~~f~~~l 305 (336)
T PRK14470 255 SGVNVGEEDAAALGRLLAGIPVR-LNPIAVNDATG---RY-RPPDEDEWNAFRDAL 305 (336)
T ss_pred ecccCCHHHHHHHHHHHhcCCCe-EEEeccCCCCC---Cc-cCCCHHHHHHHHHHH
Confidence 89999999999999999988763 44445654332 22 123344455555444
No 117
>PRK14457 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=98.46 E-value=2.2e-05 Score=77.67 Aligned_cols=189 Identities=10% Similarity=0.133 Sum_probs=115.5
Q ss_pred eEEEEeecCCCCCCCCCcccCCCCCCCCCCchhHHHHHHHHHHC---CCcEEEEee-ecCCCCCCchHHHHHHHHHHHHh
Q 019890 129 TATIMILGDTCTRGCRFCNVKTSRAPPPPDPDEPTNVAEAIASW---GLDYVVITS-VDRDDLADQGSGHFAQTVRKLKE 204 (334)
Q Consensus 129 Tatfm~igdgCtr~C~FC~V~~~r~p~~ld~~Ep~~~A~av~~~---GlkeVVLTS-v~rdDl~d~Ga~~fa~lIr~Ik~ 204 (334)
+..+|.-+-||+-+|.||.-....-...++++|+..++..+.+. +++.||++| +.. +- ..+.+.+.++.+++
T Consensus 101 ~t~cvSsqvGC~~~C~FC~tg~~g~~rnlt~~EIv~qv~~~~~~~~~~~~~IvfmGmGEP--ll--n~~~v~~~i~~l~~ 176 (345)
T PRK14457 101 LTVCVSSQVGCPMACDFCATGKGGLKRSLKAHEIVDQVLTVQEDMQRRVSHVVFMGMGEP--LL--NIDEVLAAIRCLNQ 176 (345)
T ss_pred CEEEEeCCCCCCCcCCcCCCCCCCCccccCHHHHHHHHHHHHHHhcCCCCEEEEEecCcc--cc--CHHHHHHHHHHHhc
Confidence 55778788999999999976643212358999999998876553 689999999 542 21 12344455555543
Q ss_pred hCCCC-----ceeee--------eccccc------cc-cccchhh-HHHHHHhhcC--CCCCHHHHHHHHHH-HHHhCCC
Q 019890 205 LKPNM-----LIEAL--------VAKSGL------NV-FAHNIET-VEELQSAVRD--HRANFKQSLDVLMM-AKDYVPA 260 (334)
Q Consensus 205 ~~P~i-----~vE~L--------l~~ag~------dv-~~HnlET-v~~l~~~Vr~--r~~tye~sL~vL~~-ak~~~p~ 260 (334)
. -++ +|... +.+.++ ++ +.--+.. .+.+++++.| +++..++.++-++. +.+....
T Consensus 177 ~-~~i~~r~itvST~G~~~~i~~L~~~~~~~~~~~~~~laiSLha~~~e~r~~i~p~~~~~~l~~l~~~~~~y~~~~gr~ 255 (345)
T PRK14457 177 D-LGIGQRRITVSTVGVPKTIPQLAELAFQRLGRLQFTLAVSLHAPNQKLRETLIPSAKNYPIENLLEDCRHYVAITGRR 255 (345)
T ss_pred c-cCCccCceEEECCCchhhHHHHHhhhhhhcccCceEEEEEeCCCCHHHHHHhcCCccCCCHHHHHHHHHHHHHHhCCE
Confidence 2 122 22221 333331 11 1111222 2566666543 35667777755544 4444333
Q ss_pred cceEeeceEEecCCCHHHHHHHHHHHHHcCCcEEeeccCcCCCCCCCcccccCCHHHHHHHHHHHHH
Q 019890 261 GTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMPVSEYITPEAFERYRALGME 327 (334)
Q Consensus 261 Gl~tkTgiMVGlGETdEE~~etl~~Lre~gvd~vtigqYlrP~~~h~~v~~yv~P~~f~~~~~~a~~ 327 (334)
+.+..-+|=|+-.++|++.++.++|+.+++ .|.+=+|-......+ +-.++++.+.++++..+
T Consensus 256 -I~iey~LIpGvNDs~e~a~~La~~l~~l~~-~VnLIPynp~~~~~~---~~ps~e~i~~f~~~L~~ 317 (345)
T PRK14457 256 -VSFEYILLGGVNDLPEHAEELANLLRGFQS-HVNLIPYNPIDEVEF---QRPSPKRIQAFQRVLEQ 317 (345)
T ss_pred -EEEEEEEECCcCCCHHHHHHHHHHHhcCCC-eEEEecCCCCCCCCC---CCCCHHHHHHHHHHHHH
Confidence 777888899999999999999999999976 566666754322111 22455566666665544
No 118
>PRK14468 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=98.45 E-value=1.9e-05 Score=78.01 Aligned_cols=186 Identities=13% Similarity=0.154 Sum_probs=113.1
Q ss_pred EEEeecCCCCCCCCCcccCCCCCCCCCCchhHHHHHHHHHHC-C-----CcEEEEee-ecCCCCCCchHHHHHHHHHHHH
Q 019890 131 TIMILGDTCTRGCRFCNVKTSRAPPPPDPDEPTNVAEAIASW-G-----LDYVVITS-VDRDDLADQGSGHFAQTVRKLK 203 (334)
Q Consensus 131 tfm~igdgCtr~C~FC~V~~~r~p~~ld~~Ep~~~A~av~~~-G-----lkeVVLTS-v~rdDl~d~Ga~~fa~lIr~Ik 203 (334)
..+..+.||+-+|.||.-....-...++++|+.+++..+... | +++||++| +.- + ...+.+.+.++.+.
T Consensus 95 ~cvSsq~GC~l~C~fC~tg~~g~~r~Lt~~EI~~qv~~~~~~~g~~~~~i~~Vvf~GmGEP--l--ln~~~v~~~i~~l~ 170 (343)
T PRK14468 95 ICVSTMVGCPAGCAFCATGAMGFGRNLTAAEILDQVLAVAGHEGISPREIRNVVLMGMGEP--L--LNYENVLKAARIML 170 (343)
T ss_pred EEEEecCCCCCcCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhcCcCcCCccEEEEeccCcc--c--cCHHHHHHHHHHhc
Confidence 466689999999999975442213468999999888765443 2 67999998 542 1 12233444444442
Q ss_pred hhCCC-C-------ceeee--------eccccccc-cccchhhH-HHHHHhhcC--CCCCHHHHHHHHHHHHHhCCCcce
Q 019890 204 ELKPN-M-------LIEAL--------VAKSGLNV-FAHNIETV-EELQSAVRD--HRANFKQSLDVLMMAKDYVPAGTL 263 (334)
Q Consensus 204 ~~~P~-i-------~vE~L--------l~~ag~dv-~~HnlETv-~~l~~~Vr~--r~~tye~sL~vL~~ak~~~p~Gl~ 263 (334)
.|. + ++... +.++++++ ++--+... +..++++.+ +++..++-++.++...+....-+.
T Consensus 171 --~~~g~~l~~r~itvST~G~~~~i~~L~~~~l~~~LaiSL~a~d~e~r~~i~p~~~~~~l~~ll~~l~~~~~~~~~~V~ 248 (343)
T PRK14468 171 --HPQALAMSPRRVTLSTVGIPKGIRRLAEEDLGVRLALSLHAPDEETRQRIIPTAHRYSIAEIMAAVRHYQAVTGRRVT 248 (343)
T ss_pred --ccccccccCceEEEECCCChHHHHHHHHhCcCcEEEEEcCCCCHHHHHHhccccccCCHHHHHHHHHHHHHhcCCeEE
Confidence 232 1 11111 55556553 33334433 667777652 346788888888755554322155
Q ss_pred EeeceEEecCCCHHHHHHHHHHHHHcCCcEEeeccCcCCCCCCCcccccCCHHHHHHHHHHHH
Q 019890 264 TKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMPVSEYITPEAFERYRALGM 326 (334)
Q Consensus 264 tkTgiMVGlGETdEE~~etl~~Lre~gvd~vtigqYlrP~~~h~~v~~yv~P~~f~~~~~~a~ 326 (334)
+..-+|=|+-.++||+.++.++++++.+ .|.+=+|..... .-.+-.+++..+.++++-.
T Consensus 249 ieyvLI~GvNDs~e~~~~L~~ll~~~~~-~VnLIPynp~~~---~~~~~ps~e~i~~f~~~L~ 307 (343)
T PRK14468 249 LEYTMLKGVNDHLWQAELLADLLRGLVS-HVNLIPFNPWEG---SPFQSSPRAQILAFADVLE 307 (343)
T ss_pred EEEEEeCCCcCCHHHHHHHHHHHhcCCc-EEEEEcCCCCCC---CCCCCCCHHHHHHHHHHHH
Confidence 6677777899999999999999999865 455556663211 1122245555666665543
No 119
>TIGR03821 AblA_like_1 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in E. coli, Buchnera, Yersinia, etc.
Probab=98.44 E-value=1.3e-05 Score=78.44 Aligned_cols=172 Identities=17% Similarity=0.251 Sum_probs=105.2
Q ss_pred EEEeecCCCCCCCCCcccCCCCC-CCCCCchhHHHHHHHHHHC-CCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhCCC
Q 019890 131 TIMILGDTCTRGCRFCNVKTSRA-PPPPDPDEPTNVAEAIASW-GLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPN 208 (334)
Q Consensus 131 tfm~igdgCtr~C~FC~V~~~r~-p~~ld~~Ep~~~A~av~~~-GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~P~ 208 (334)
+.++++++|+-+|+||.-+.... ...+..+++.+..+.+++. |+++|+||||+--.++| ..|.++++.+... +.
T Consensus 98 ~l~~~t~~Cn~~Cr~C~~~~~~~~~~~~~~~~~~~~i~~i~~~~~i~~VvltGGEPL~~~d---~~L~~ll~~l~~i-~~ 173 (321)
T TIGR03821 98 VLLIVTGGCAINCRYCFRRHFPYQENQPNKAQWKEALEYIAQHPEINEVILSGGDPLMAKD---HRLDWLLNLLEQI-PH 173 (321)
T ss_pred EEEEeCCCcCCcCcCCCCCCcCCCCCCCCHHHHHHHHHHHHhcCCCCEEEEeCcccccCCc---hHHHHHHHHHHhC-CC
Confidence 45669999999999997543211 1235567777777777754 99999999987422222 2466777766543 32
Q ss_pred C---ceee----e------------ecccccccccc-chhhHHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCcceE--ee
Q 019890 209 M---LIEA----L------------VAKSGLNVFAH-NIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLT--KT 266 (334)
Q Consensus 209 i---~vE~----L------------l~~ag~dv~~H-nlETv~~l~~~Vr~r~~tye~sL~vL~~ak~~~p~Gl~t--kT 266 (334)
+ .+.. + +.++|..++.. .++...+ ..+...+.++.+++. |+.+ .|
T Consensus 174 ~~~iri~tr~~~~~p~rit~el~~~L~~~~~~~~~~~h~dh~~E----------i~d~~~~ai~~L~~~---Gi~v~~qt 240 (321)
T TIGR03821 174 LKRLRIHTRLPVVIPDRITSGLCDLLANSRLQTVLVVHINHANE----------IDAEVADALAKLRNA---GITLLNQS 240 (321)
T ss_pred CcEEEEecCcceeeHHHhhHHHHHHHHhcCCcEEEEeeCCChHh----------CcHHHHHHHHHHHHc---CCEEEecc
Confidence 1 1110 0 33333322210 1111112 234566677788775 5544 55
Q ss_pred ceEEecCCCHHHHHHHHHHHHHcCCcEEeeccCcCCCCCCCcccccCCHHHHHHHH
Q 019890 267 SIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMPVSEYITPEAFERYR 322 (334)
Q Consensus 267 giMVGlGETdEE~~etl~~Lre~gvd~vtigqYlrP~~~h~~v~~yv~P~~f~~~~ 322 (334)
.++=|+-.+.+++.++++.|.++|+.-..++++ .|+...- .-.+++++..++-
T Consensus 241 vllkgiNDn~~~l~~L~~~l~~~gv~pyyl~~~-~p~gg~~--~f~v~~~~~~~i~ 293 (321)
T TIGR03821 241 VLLRGVNDNADTLAALSERLFDAGVLPYYLHLL-DKVQGAA--HFDVDDERARALM 293 (321)
T ss_pred eeeCCCCCCHHHHHHHHHHHHHcCCeeCccccc-CCCCCcc--cccCCHHHHHHHH
Confidence 666688899999999999999999998888754 4654311 1346666544443
No 120
>TIGR03278 methan_mark_10 putative methanogenesis marker protein 10. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The presence of motifs with seven invariant Cys residues in the N-terminal 50 residues, including three instances of CXXC, would be consistent with function as an oxidoreductase with FeS clusters. The exact function is unknown, but likely is linked to methanogenesis. In most genomes, the member of this family is encoded by a gene next to, and divergently transcribed from, the methyl coenzyme M reductase operon.
Probab=98.42 E-value=1.7e-05 Score=80.05 Aligned_cols=185 Identities=13% Similarity=0.170 Sum_probs=120.3
Q ss_pred CCCCC---CCCCcccCCCC-CCCCCCchhHHHHHHHHHHC---CCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhCCCC
Q 019890 137 DTCTR---GCRFCNVKTSR-APPPPDPDEPTNVAEAIASW---GLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNM 209 (334)
Q Consensus 137 dgCtr---~C~FC~V~~~r-~p~~ld~~Ep~~~A~av~~~---GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~P~i 209 (334)
..|.. +|.||.-.... .....+++|+.++++..... ....|.++|+.- .-- ..++.++++.+++..-.+
T Consensus 30 ~~C~~~~~~C~yC~~~~~e~~g~~~t~~evl~ev~~d~~~~~~~~ggVtisGGGe--pl~--~~~l~eLl~~lk~~gi~t 105 (404)
T TIGR03278 30 KNCPPGTKGCDYCTRSVWEINGDFIPPQVVLGEVQTSLGFRTGRDTKVTISGGGD--VSC--YPELEELTKGLSDLGLPI 105 (404)
T ss_pred CcCCCCCCCCCCCCchhhhhcCCcCCHHHHHHHHHHHHHHhcCCCCEEEEECCcc--ccc--CHHHHHHHHHHHhCCCCE
Confidence 45744 78888332111 12357889999888876542 457888888742 211 247889999999853223
Q ss_pred cee-----ee--------eccccccccccchhhH-HHHHHhhcCCCCCHHHHHHHHHHHHHhCCCcceEeeceEEecCCC
Q 019890 210 LIE-----AL--------VAKSGLNVFAHNIETV-EELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGET 275 (334)
Q Consensus 210 ~vE-----~L--------l~~ag~dv~~HnlETv-~~l~~~Vr~r~~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGlGET 275 (334)
.++ .+ +++.++|.+..-+.+. +.+++++. ...+.++.|+.|+++.+. .. +.+..-++=|+-.+
T Consensus 106 aI~~TnG~~l~~~e~~~~L~~~gld~v~iSvka~dpe~h~kl~-G~~~a~~ILe~L~~L~e~-~~-v~~~ivlIPGiND~ 182 (404)
T TIGR03278 106 HLGYTSGKGFDDPEIAEFLIDNGVREVSFTVFATDPELRREWM-KDPTPEASLQCLRRFCES-CE-VHAASVIIPGVNDG 182 (404)
T ss_pred EEeCCCCcccCCHHHHHHHHHcCCCEEEEecccCCHHHHHHHh-CCCCHHHHHHHHHHHHhc-CC-EEEEEEEeCCccCc
Confidence 333 11 5566677776667654 88998877 344558999999999883 34 55666666677655
Q ss_pred HHHHHHHHHHHHHcCCcEEeeccCcC---C----CC-CCCcccccCCHHHHHHH-HHHHHHhh
Q 019890 276 PDQVVSTMEKVRAAGVDVMTFGQYMR---P----SK-RHMPVSEYITPEAFERY-RALGMEMV 329 (334)
Q Consensus 276 dEE~~etl~~Lre~gvd~vtigqYlr---P----~~-~h~~v~~yv~P~~f~~~-~~~a~~~~ 329 (334)
+|. .+++++|.++++..+.+..|-+ . .. .-++-.+-.+.++|..+ +++.++.+
T Consensus 183 eel-~~ti~~L~~lg~~~V~L~~y~~~g~~ky~lg~~~~~~~~~~~~~~e~~~~v~~~~~~~~ 244 (404)
T TIGR03278 183 DVL-WKTCADLESWGAKALILMRFANTEEQGLILGNAPIIPGIKPHTVSEFKNIVRETHKEFP 244 (404)
T ss_pred HHH-HHHHHHHHHCCCCEEEEEecccccccccccCCcCcccCCCCCCHHHHHHHHHHHHHHhC
Confidence 554 5999999999999999988863 2 11 11221234466777777 66666654
No 121
>COG0731 Fe-S oxidoreductases [Energy production and conversion]
Probab=98.42 E-value=9.3e-06 Score=78.75 Aligned_cols=183 Identities=14% Similarity=0.221 Sum_probs=124.8
Q ss_pred CCCCCCCCcccCCCCC-----CCCCCchhHHHHHHHHHHC------CCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhC
Q 019890 138 TCTRGCRFCNVKTSRA-----PPPPDPDEPTNVAEAIASW------GLDYVVITSVDRDDLADQGSGHFAQTVRKLKELK 206 (334)
Q Consensus 138 gCtr~C~FC~V~~~r~-----p~~ld~~Ep~~~A~av~~~------GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~ 206 (334)
.|+.+|-||-...... |...+++.+.+..+.+... ..+||.|++..-..| ..++-++|+++|+..
T Consensus 33 ~Cs~~CvyC~~G~~~~~~~~~~efi~~~~I~~~~~~~~~~~g~ea~~pd~vtis~~GEPTL----y~~L~elI~~~k~~g 108 (296)
T COG0731 33 WCSYNCVYCWRGRTKKGTPERPEFIVEESILEELKLLLGYKGDEATEPDHVTISLSGEPTL----YPNLGELIEEIKKRG 108 (296)
T ss_pred hhcCCCeEEecccCCCCCCCCCceecHHHHHHHHHHHhcccccccCCCCEEEEeCCCCccc----ccCHHHHHHHHHhcC
Confidence 7999999998832221 2235677888777777665 578888877543222 236789999998863
Q ss_pred CCCceeee--------eccc-cccccccchhhH-HHHHHhhcCCC---CCHHHHHHHHHHHHHh-CCCcceEeeceEEec
Q 019890 207 PNMLIEAL--------VAKS-GLNVFAHNIETV-EELQSAVRDHR---ANFKQSLDVLMMAKDY-VPAGTLTKTSIMLGC 272 (334)
Q Consensus 207 P~i~vE~L--------l~~a-g~dv~~HnlETv-~~l~~~Vr~r~---~tye~sL~vL~~ak~~-~p~Gl~tkTgiMVGl 272 (334)
.+++-++ +.+. -+|.+---++.. +..|++|. |. ..+++.++.|+.+++. ... +.+.+.++=|+
T Consensus 109 -~~~tflvTNgslpdv~~~L~~~dql~~sLdA~~~~~~~~In-RP~~~~~~e~ile~L~~~~~~~~~~-~vir~tlvkg~ 185 (296)
T COG0731 109 -KKTTFLVTNGSLPDVLEELKLPDQLYVSLDAPDEKTFRRIN-RPHKKDSWEKILEGLEIFRSEYKGR-TVIRTTLVKGI 185 (296)
T ss_pred -CceEEEEeCCChHHHHHHhccCCEEEEEeccCCHHHHHHhc-CCCCcchHHHHHHHHHHhhhcCCCc-EEEEEEEeccc
Confidence 1333333 1111 234333334543 67888887 44 4699999999999987 555 77899999999
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEeeccCcCCCCCC--CcccccCCHHHHHHHHHHHHHhhc
Q 019890 273 GETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRH--MPVSEYITPEAFERYRALGMEMVS 330 (334)
Q Consensus 273 GETdEE~~etl~~Lre~gvd~vtigqYlrP~~~h--~~v~~yv~P~~f~~~~~~a~~~~~ 330 (334)
--++|++.+..++|+.+..|.|-+..|+||.... ++...... .++..+++..++.
T Consensus 186 N~~~e~~~~~a~ll~~~~Pd~velk~~~rpgas~~~l~~~~~p~---~e~~~~f~~~l~~ 242 (296)
T COG0731 186 NDDEEELEEYAELLERINPDFVELKTYMRPGASRYRLPRSNMPL---HEEVLEFAKELGE 242 (296)
T ss_pred cCChHHHHHHHHHHHhcCCCeEEEecCccCChHhhccCccccch---hHHHHHHHHHhhc
Confidence 9999999999999999999999999999997533 33332222 3445556666543
No 122
>PRK14459 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=98.38 E-value=2.6e-05 Score=77.97 Aligned_cols=167 Identities=16% Similarity=0.181 Sum_probs=105.5
Q ss_pred EEEeecCCCCCCCCCcccCCCCCCCCCCchhHHHHHHHHHH---C------C--CcEEEEee-ecCCCCCCchHHHHHHH
Q 019890 131 TIMILGDTCTRGCRFCNVKTSRAPPPPDPDEPTNVAEAIAS---W------G--LDYVVITS-VDRDDLADQGSGHFAQT 198 (334)
Q Consensus 131 tfm~igdgCtr~C~FC~V~~~r~p~~ld~~Ep~~~A~av~~---~------G--lkeVVLTS-v~rdDl~d~Ga~~fa~l 198 (334)
.-+-.+.||+-+|.||+-+...-...+.++|+..++..+.+ . | ++.||+.| +. |-...+.+.+.
T Consensus 123 lCvSsQvGC~m~C~FCatg~~g~~RnLt~~EIv~Qv~~~~~~~~~~~~~~~~~~i~nVvfmGmGE----PLlN~d~V~~~ 198 (373)
T PRK14459 123 LCISSQAGCGMACPFCATGQGGLTRNLSTAEIVEQVRAAARALRDGEVPGGPGRLSNVVFMGMGE----PLANYKRVVAA 198 (373)
T ss_pred EEEEecCCCCCcCCCCCCCCCCCCCccCHHHHHHHHHHHHHHhhhcccccCCCceeEEEEecCCc----chhhHHHHHHH
Confidence 45667899999999998554221245899999998887653 1 2 77899999 54 21123456666
Q ss_pred HHHHHhhCC---CC-----ceeee--------ecccccc-ccccchhhH-HHHHHhhcC--CCCCHHHHHHHHHHHHHhC
Q 019890 199 VRKLKELKP---NM-----LIEAL--------VAKSGLN-VFAHNIETV-EELQSAVRD--HRANFKQSLDVLMMAKDYV 258 (334)
Q Consensus 199 Ir~Ik~~~P---~i-----~vE~L--------l~~ag~d-v~~HnlETv-~~l~~~Vr~--r~~tye~sL~vL~~ak~~~ 258 (334)
|+.|++..| ++ +|... +.+.+++ .++.-+.+. +.+++.+-| ++++.++.++.++...+..
T Consensus 199 i~~l~~~~~~g~gis~r~ITvST~Gl~~~i~~la~~~l~~~LavSLha~d~e~R~~l~p~n~~~~l~~ll~a~~~~~~~~ 278 (373)
T PRK14459 199 VRRITAPAPEGLGISARNVTVSTVGLVPAIRKLADEGLPVTLAVSLHAPDDELRDELVPVNTRWKVDEVLDAARYYADAT 278 (373)
T ss_pred HHHHhCcccccCCccCCEEEEECcCchhHHHHHHHhcCCeEEEEEeCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHHh
Confidence 666655212 22 22221 4555554 233333333 566666653 3588888888866665322
Q ss_pred CCcceEeeceEEecCCCHHHHHHHHHHHHHcC--CcEEeeccCcC
Q 019890 259 PAGTLTKTSIMLGCGETPDQVVSTMEKVRAAG--VDVMTFGQYMR 301 (334)
Q Consensus 259 p~Gl~tkTgiMVGlGETdEE~~etl~~Lre~g--vd~vtigqYlr 301 (334)
..-+.+.--+|=|+-.++||..++.++|+.++ .-.|.+=+|..
T Consensus 279 grrv~ieyvLi~GvNDs~e~a~~L~~llk~~~~~~~~VNLIpyNp 323 (373)
T PRK14459 279 GRRVSIEYALIRDINDQPWRADLLGKKLHGRGGGWVHVNLIPLNP 323 (373)
T ss_pred CCEEEEEEEEeCCCCCCHHHHHHHHHHHhhccCCCeEEEEEccCC
Confidence 21144566677789999999999999999984 34566666663
No 123
>PRK14453 chloramphenicol/florfenicol resistance protein; Provisional
Probab=98.27 E-value=9.1e-05 Score=73.42 Aligned_cols=188 Identities=13% Similarity=0.140 Sum_probs=111.6
Q ss_pred EEeecCCCCCCCCCcccCCCCCCCCCCchhHHHHHHHHHHCC--CcEEEEee-ecCCCCCCchHHHHHHHHHHHHhhC-C
Q 019890 132 IMILGDTCTRGCRFCNVKTSRAPPPPDPDEPTNVAEAIASWG--LDYVVITS-VDRDDLADQGSGHFAQTVRKLKELK-P 207 (334)
Q Consensus 132 fm~igdgCtr~C~FC~V~~~r~p~~ld~~Ep~~~A~av~~~G--lkeVVLTS-v~rdDl~d~Ga~~fa~lIr~Ik~~~-P 207 (334)
-+.-+.||+-+|.||+-+...-...+..+|+.++...+...| ++.||++| +.. |-. ..+.+.|+.|++.. .
T Consensus 103 CvssqvGC~~~C~FC~tg~~g~~rnLt~~EIv~qv~~~~~~~~~i~~IvfmGmGEP--Lln---~~v~~~i~~l~~~~~~ 177 (347)
T PRK14453 103 CISSQCGCGFGCRFCATGSIGLKRNLTADEITDQLLYFYLNGHRLDSISFMGMGEA--LAN---PELFDALKILTDPNLF 177 (347)
T ss_pred EEecCCCcCCCCCCCCCCCCCCcccCCHHHHHHHHHHHHhcCCCcceEEEeecCCc--cCC---HHHHHHHHHHhccccc
Confidence 455689999999999877543234689999999998776665 89999999 653 211 13566666665521 1
Q ss_pred C-----Cceeee--------eccccc------cccccchhhHHHHHHhhcCCCCCHHHHHHHHHHHHH-hCCCcceEeec
Q 019890 208 N-----MLIEAL--------VAKSGL------NVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKD-YVPAGTLTKTS 267 (334)
Q Consensus 208 ~-----i~vE~L--------l~~ag~------dv~~HnlETv~~l~~~Vr~r~~tye~sL~vL~~ak~-~~p~Gl~tkTg 267 (334)
+ +.|+.. +.+..+ +.-+.+-|.-.++++- . +++..++-++.++..-. .... +.+..-
T Consensus 178 ~~~~r~itVsT~G~~~~i~~l~~~~~~v~LalSLha~dd~~r~~l~pi-~-~~~~L~~ll~~~~~~l~~~~~~-V~iry~ 254 (347)
T PRK14453 178 GLSQRRITISTIGIIPGIQRLTQEFPQVNLTFSLHSPFESQRSELMPI-N-KRFPLNEVMKTLDEHIRHTGRK-VYIAYI 254 (347)
T ss_pred CCCCCcEEEECCCCchhHHHHHhhccCcCEEEEecCCCHHHHHHhcCc-c-ccccHHHHHHHHHHHHHhcCCc-EEEEEE
Confidence 2 223222 111111 1111121122233322 2 34555555555444433 3233 677889
Q ss_pred eEEecCCCHHHHHHHHHHHHHcC----CcEEeeccCcCCCCCCCcccccCCHHHHHHHHHHHHHh
Q 019890 268 IMLGCGETPDQVVSTMEKVRAAG----VDVMTFGQYMRPSKRHMPVSEYITPEAFERYRALGMEM 328 (334)
Q Consensus 268 iMVGlGETdEE~~etl~~Lre~g----vd~vtigqYlrP~~~h~~v~~yv~P~~f~~~~~~a~~~ 328 (334)
+|=|+-.++||+.++.++++.++ +..|.+=+|.+-... ..-.+-.+.++.+.++++..+.
T Consensus 255 LI~GvNDs~e~a~~L~~~lk~l~~~~~~~~VnLIPyn~~~~~-~~~~~~ps~e~v~~f~~~L~~~ 318 (347)
T PRK14453 255 MLEGVNDSKEHAEAVVGLLRNRGSWEHLYHVNLIPYNSTDKT-PFKFQSSSAGQIKQFCSTLKSA 318 (347)
T ss_pred eECCCCCCHHHHHHHHHHHhhccccCCcceEEEecCCCCCCC-CccCCCCCHHHHHHHHHHHHHC
Confidence 99999999999999999999874 456777777642221 1112334555566666665543
No 124
>COG1031 Uncharacterized Fe-S oxidoreductase [Energy production and conversion]
Probab=98.21 E-value=3.2e-05 Score=78.63 Aligned_cols=169 Identities=18% Similarity=0.305 Sum_probs=114.7
Q ss_pred EeecCCCCCC----CCCcccCCCCCCCCCCchhHHHHHHHHHHCCCcEEEEeeec------CCC----CCCchHHHHHHH
Q 019890 133 MILGDTCTRG----CRFCNVKTSRAPPPPDPDEPTNVAEAIASWGLDYVVITSVD------RDD----LADQGSGHFAQT 198 (334)
Q Consensus 133 m~igdgCtr~----C~FC~V~~~r~p~~ld~~Ep~~~A~av~~~GlkeVVLTSv~------rdD----l~d~Ga~~fa~l 198 (334)
|-..-||.+. |+||.=|.-..+...+++.+.++.+++.+.|++|.-|-=+. .+| .|.-..+.+.++
T Consensus 187 iETyRGC~r~~~ggCSFCtEp~~g~~~~R~~e~Vv~EVkaLY~~GvrhFRlGRQ~difsy~~~~~g~e~P~PnPealekL 266 (560)
T COG1031 187 IETYRGCPRRVSGGCSFCTEPVRGRPEFRPPEDVVEEVKALYRAGVRHFRLGRQADIFSYGADDNGGEVPRPNPEALEKL 266 (560)
T ss_pred EeeccCCcccccCCCccccCcCcCCcccCCHHHHHHHHHHHHHhccceeeeccccceeeecccccCCCCCCCCHHHHHHH
Confidence 4456799987 99998875322556899999999999999999998773221 111 111125788999
Q ss_pred HHHHHhhCCCCc-eeeeecccc------------------------ccccccchhhH-HHHHHhhcCCCCCHHHHHHHHH
Q 019890 199 VRKLKELKPNML-IEALVAKSG------------------------LNVFAHNIETV-EELQSAVRDHRANFKQSLDVLM 252 (334)
Q Consensus 199 Ir~Ik~~~P~i~-vE~Ll~~ag------------------------~dv~~HnlETv-~~l~~~Vr~r~~tye~sL~vL~ 252 (334)
.+.|+...|++. +++- +++ =||.+..+||. |++.+.=+ -..+-++.++.++
T Consensus 267 ~~Gir~~AP~l~tLHiD--NaNP~tIa~yp~eSr~i~K~ivky~TpGnVaAfGlEsaDp~V~r~Nn-L~~spEEvl~AV~ 343 (560)
T COG1031 267 FRGIRNVAPNLKTLHID--NANPATIARYPEESREIAKVIVKYGTPGNVAAFGLESADPRVARKNN-LNASPEEVLEAVE 343 (560)
T ss_pred HHHHHhhCCCCeeeeec--CCCchhhhcChHHHHHHHHHHHhhCCCCceeeeeccccCHHHHhhcc-ccCCHHHHHHHHH
Confidence 999999999852 2332 222 24555567776 55555433 4678888888888
Q ss_pred HHHHhC--------CCcceEeeceEEec-CCCHHHHHHHHHHHHHc---C--CcEEeeccCc-CCCCC
Q 019890 253 MAKDYV--------PAGTLTKTSIMLGC-GETPDQVVSTMEKVRAA---G--VDVMTFGQYM-RPSKR 305 (334)
Q Consensus 253 ~ak~~~--------p~Gl~tkTgiMVGl-GETdEE~~etl~~Lre~---g--vd~vtigqYl-rP~~~ 305 (334)
-+-+.- |. +.-.-.++.|| |||.|-+.-..++|+++ | +-++.|=|-+ =|+..
T Consensus 344 ivn~vG~~rg~nGlP~-lLPGINfv~GL~GEtkeT~~ln~efL~~ild~gllvRRINIRqV~~fpgT~ 410 (560)
T COG1031 344 IVNEVGGGRGYNGLPY-LLPGINFVFGLPGETKETYELNYEFLKEILDEGLLVRRINIRQVVVFPGTP 410 (560)
T ss_pred HHHHhcCccCcCCCcc-ccccceeEecCCCccHHHHHhhHHHHHHHHhcCceEEEeeeeeEeecCCCc
Confidence 877752 22 34577899999 99999999988888875 2 3345554443 25543
No 125
>PRK13758 anaerobic sulfatase-maturase; Provisional
Probab=98.20 E-value=9e-05 Score=72.79 Aligned_cols=177 Identities=11% Similarity=0.192 Sum_probs=110.2
Q ss_pred cCCCCCCCCCcccCCCCC------CCCCCchhHHHHHHHHHHC--CCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhC-
Q 019890 136 GDTCTRGCRFCNVKTSRA------PPPPDPDEPTNVAEAIASW--GLDYVVITSVDRDDLADQGSGHFAQTVRKLKELK- 206 (334)
Q Consensus 136 gdgCtr~C~FC~V~~~r~------p~~ld~~Ep~~~A~av~~~--GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~- 206 (334)
++.|+-+|.||-.+.... ...++.+.+.+.++.+.+. +...|++||+.- +-. ..+.+.++++.+++..
T Consensus 12 t~~CNl~C~yC~~~~~~~~~~~~~~~~m~~~~~~~~i~~~~~~~~~~~~i~~~GGEP--ll~-~~~~~~~~~~~~~~~~~ 88 (370)
T PRK13758 12 SSGCNLKCTYCFYHSLSDNRNVKSYGIMRDEVLESMVKRVLNEAEGHCSFAFQGGEP--TLA-GLEFFEELMELQRKHNY 88 (370)
T ss_pred CCCcCCCCcccCCcCccccccccccCCCCHHHHHHHHHHHHhccCCceEEEEECCcc--ccC-ChHHHHHHHHHHHHhcc
Confidence 379999999998764221 1235667777777755444 445789999763 111 1245667787777652
Q ss_pred CCCce--eee-------------eccccccccccchhhHHHHHHhhcC---CCCCHHHHHHHHHHHHHhCCCcceEeece
Q 019890 207 PNMLI--EAL-------------VAKSGLNVFAHNIETVEELQSAVRD---HRANFKQSLDVLMMAKDYVPAGTLTKTSI 268 (334)
Q Consensus 207 P~i~v--E~L-------------l~~ag~dv~~HnlETv~~l~~~Vr~---r~~tye~sL~vL~~ak~~~p~Gl~tkTgi 268 (334)
.++.+ .+. +.+.+. .+.--++..++.+..+|. ...+|++.++.|+.+++. |+.+...+
T Consensus 89 ~~~~~~~~i~TNG~ll~~~~~~~l~~~~~-~v~iSlDg~~~~hd~~R~~~~g~~~f~~v~~~i~~l~~~---~~~~~i~~ 164 (370)
T PRK13758 89 KNLKIYNSLQTNGTLIDESWAKFLSENKF-LVGLSMDGPKEIHNLNRKDCCGLDTFSKVERAAELFKKY---KVEFNILC 164 (370)
T ss_pred CCCeEEEEEEecCEecCHHHHHHHHHcCc-eEEEeecCCHHHhccccCCCCCCccHHHHHHHHHHHHHh---CCCceEEE
Confidence 22222 222 333333 344456665677777662 256899999999999986 44444444
Q ss_pred EEecCCCHHHHHHHHHHHHHcCCcEEeeccCcCCCCCCCccccc-CCHHHHHH
Q 019890 269 MLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMPVSEY-ITPEAFER 320 (334)
Q Consensus 269 MVGlGETdEE~~etl~~Lre~gvd~vtigqYlrP~~~h~~v~~y-v~P~~f~~ 320 (334)
++. -.+.+|+.+.++.++++|++.+.+..++-|...+.....+ +.|+++..
T Consensus 165 ~v~-~~n~~~l~~i~~~~~~~g~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~ 216 (370)
T PRK13758 165 VVT-SNTARHVNKIYKYFKEKDFKFLQFINCLDPLYEEKGKYNYSLKPKDYTK 216 (370)
T ss_pred Eec-cccccCHHHHHHHHHHcCCCeEeeeeccCccccccCCCcCccCHHHHHH
Confidence 444 3567789999999999999988765555565444333333 57776544
No 126
>TIGR03820 lys_2_3_AblA lysine-2,3-aminomutase. This model describes lysine-2,3-aminomutase as found along with beta-lysine acetyltransferase in a two-enzyme pathway for making the compatible solute N-epsilon-acetyl-beta-lysine. This compatible solute, or osmolyte, is known to protect a number of methanogenic archaea against salt stress. The trusted cutoff distinguishes a tight clade with essentially full-length homology from additional homologs that are shorter or highly diverged in the C-terminal region. All members of this family have the radical SAM motif CXXXCXXC, while some but not all have a second copy of the motif in the C-terminal region.
Probab=98.16 E-value=0.00013 Score=73.95 Aligned_cols=158 Identities=20% Similarity=0.269 Sum_probs=101.2
Q ss_pred EEEEeecCCCCCCCCCcccCCCCC--CCCCCchhHHHHHHHHHH-CCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhC
Q 019890 130 ATIMILGDTCTRGCRFCNVKTSRA--PPPPDPDEPTNVAEAIAS-WGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELK 206 (334)
Q Consensus 130 atfm~igdgCtr~C~FC~V~~~r~--p~~ld~~Ep~~~A~av~~-~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~ 206 (334)
+..+.++++|+-.|+||--....+ ...++.+++.+..+.+++ .++++|.|||+|---++| ..|..+++.|++.
T Consensus 109 rvLl~vT~~C~~~CryC~R~~~~g~~~~~ls~eei~~~i~yI~~~p~I~~VlLSGGDPLll~d---~~L~~iL~~L~~I- 184 (417)
T TIGR03820 109 RVLFLVSNTCAMYCRHCTRKRKVGDRDSIPSKEQILEGIEYIRNTPQIRDVLLSGGDPLLLSD---DYLDWILTELRAI- 184 (417)
T ss_pred EEEEEEcCCcCCCCcCCCCcccCCcccccCCHHHHHHHHHHHHhcCCCCEEEEeCCccccCCh---HHHHHHHHHHhhc-
Confidence 445667999999999997653111 234678899998888887 499999999998533343 3566667888763
Q ss_pred CCCceeee-eccccccccccch--hhHHHHHHhhc---------CCCCCHHHHHHHHHHHHHhCCCcceE--eeceEEec
Q 019890 207 PNMLIEAL-VAKSGLNVFAHNI--ETVEELQSAVR---------DHRANFKQSLDVLMMAKDYVPAGTLT--KTSIMLGC 272 (334)
Q Consensus 207 P~i~vE~L-l~~ag~dv~~Hnl--ETv~~l~~~Vr---------~r~~tye~sL~vL~~ak~~~p~Gl~t--kTgiMVGl 272 (334)
|++ +.+ +...-+.+++..+ |.+..| +..+ .+...+++.++-++++++. |+.+ -|-++=|.
T Consensus 185 phV--~~IRI~TR~pvv~P~RIT~ell~~L-k~~~~~~v~~h~nhp~Eit~~a~~Al~~L~~a---GI~l~nQsVLLkGV 258 (417)
T TIGR03820 185 PHV--EVIRIGTRVPVVLPQRITDELVAIL-KKHHPVWLNTHFNHPREITASSKKALAKLADA---GIPLGNQSVLLAGV 258 (417)
T ss_pred CCC--ceEEEeeccccccccccCHHHHHHH-HhcCCeEEEEeCCChHhChHHHHHHHHHHHHc---CCEEEeeceEECCc
Confidence 554 322 1111111111111 111111 1101 0233467788888888886 6654 57788888
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEeec
Q 019890 273 GETPDQVVSTMEKVRAAGVDVMTFG 297 (334)
Q Consensus 273 GETdEE~~etl~~Lre~gvd~vtig 297 (334)
....+-+.++++.|-++||.=-.++
T Consensus 259 ND~~~~l~~L~~~L~~~gV~PYYl~ 283 (417)
T TIGR03820 259 NDCPRIMKKLVHKLVANRVRPYYLY 283 (417)
T ss_pred CCCHHHHHHHHHHHHHCCCeeceee
Confidence 9999999999999999998744444
No 127
>COG1856 Uncharacterized homolog of biotin synthetase [Function unknown]
Probab=98.11 E-value=8.3e-05 Score=69.69 Aligned_cols=190 Identities=13% Similarity=0.161 Sum_probs=132.3
Q ss_pred eEEEEeecCCCCCCCCCcccCCCCCCCCCCchhHHHHHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhCCC
Q 019890 129 TATIMILGDTCTRGCRFCNVKTSRAPPPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPN 208 (334)
Q Consensus 129 Tatfm~igdgCtr~C~FC~V~~~r~p~~ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~P~ 208 (334)
+-.+-.-|..|.-+|.-|+-.+-..=-+.+..+++....++.+.|+.-+.|.|+-..+ .+-..+.|-+.++++++.. +
T Consensus 11 ~~sISVTG~yC~lnC~HCg~~~L~~Mi~vt~~~l~k~~~el~kkGy~g~llSGGm~sr-g~VPl~kf~d~lK~lke~~-~ 88 (275)
T COG1856 11 FISISVTGAYCSLNCPHCGRHYLEHMIKVTTKSLLKRCMELEKKGYEGCLLSGGMDSR-GKVPLWKFKDELKALKERT-G 88 (275)
T ss_pred CceEEEeccceEecChHHHHHHHHHhcccchHHHHHHHHHHHhcCceeEEEeCCcCCC-CCccHHHHHHHHHHHHHhh-C
Confidence 5556667999999999997665432224455788888889999999988888775211 1223577889999999863 2
Q ss_pred Ccee----ee-------eccccccc-----cccchhhHHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCcceEeeceEEec
Q 019890 209 MLIE----AL-------VAKSGLNV-----FAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC 272 (334)
Q Consensus 209 i~vE----~L-------l~~ag~dv-----~~HnlETv~~l~~~Vr~r~~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGl 272 (334)
+.+- .. ++.+++|+ +..| |+..++|.. ..+.+++++.|+.+++. |+.+--.+++|+
T Consensus 89 l~inaHvGfvdE~~~eklk~~~vdvvsLDfvgDn-~vIk~vy~l----~ksv~dyl~~l~~L~e~---~irvvpHitiGL 160 (275)
T COG1856 89 LLINAHVGFVDESDLEKLKEELVDVVSLDFVGDN-DVIKRVYKL----PKSVEDYLRSLLLLKEN---GIRVVPHITIGL 160 (275)
T ss_pred eEEEEEeeeccHHHHHHHHHhcCcEEEEeecCCh-HHHHHHHcC----CccHHHHHHHHHHHHHc---CceeceeEEEEe
Confidence 2221 11 56666554 4444 456788866 24566667777777775 788999999999
Q ss_pred -CCCHHHHHHHHHHHHHcCCcEEeeccCcC-CCCCCCcccccCCHHHHHHHHHHHHHhh
Q 019890 273 -GETPDQVVSTMEKVRAAGVDVMTFGQYMR-PSKRHMPVSEYITPEAFERYRALGMEMV 329 (334)
Q Consensus 273 -GETdEE~~etl~~Lre~gvd~vtigqYlr-P~~~h~~v~~yv~P~~f~~~~~~a~~~~ 329 (334)
+-.-+-=.+.++.|.+...|.+-+.-++. |+ ..|....-.++++....-++|++..
T Consensus 161 ~~gki~~e~kaIdiL~~~~~DalVl~vliPtpG-tkm~~~~pp~~eE~i~v~~~AR~~f 218 (275)
T COG1856 161 DFGKIHGEFKAIDILVNYEPDALVLVVLIPTPG-TKMGNSPPPPVEEAIKVVKYARKKF 218 (275)
T ss_pred ccCcccchHHHHHHHhcCCCCeEEEEEEecCCc-hhccCCCCcCHHHHHHHHHHHHHhC
Confidence 33333335678999999999988876662 44 4466677788888888888888763
No 128
>PRK13745 anaerobic sulfatase-maturase; Provisional
Probab=98.07 E-value=0.00026 Score=71.21 Aligned_cols=158 Identities=11% Similarity=0.201 Sum_probs=103.0
Q ss_pred ecCCCCCCCCCcccCCCC-----CC-CCCCchhHHHHHHHHHH-CCCcEEEE--eeecCCCCCCchHHHHHHHHHHHHhh
Q 019890 135 LGDTCTRGCRFCNVKTSR-----AP-PPPDPDEPTNVAEAIAS-WGLDYVVI--TSVDRDDLADQGSGHFAQTVRKLKEL 205 (334)
Q Consensus 135 igdgCtr~C~FC~V~~~r-----~p-~~ld~~Ep~~~A~av~~-~GlkeVVL--TSv~rdDl~d~Ga~~fa~lIr~Ik~~ 205 (334)
.++.|+-+|.||-+.... .+ ..++.++..+.++.+.+ .|.+.+.+ +|+.. +-. +...|.++++.+++.
T Consensus 20 ~~~~CNl~C~yC~~~~~~~~~~~~~~~~ms~e~~~~~i~~~~~~~~~~~v~i~f~GGEP--lL~-~~~~~~~~~~~~~~~ 96 (412)
T PRK13745 20 VGAVCNLACDYCYYLEKSKLYQENPKHVMSDELLEKFIKEYINSQTMPQVLFTWHGGET--LMR-PLSFYKKALELQKKY 96 (412)
T ss_pred cCCCcCCCCcccCCcCCCcccccCccCCCCHHHHHHHHHHHHHcCCCCeEEEEEEcccc--CCC-cHHHHHHHHHHHHHH
Confidence 457999999999985321 11 24788888888887665 46666544 68763 211 223566666655443
Q ss_pred CCCCcee--ee-------------eccccccccccchhhHHHHHHhhcC---CCCCHHHHHHHHHHHHHhCCCcceEeec
Q 019890 206 KPNMLIE--AL-------------VAKSGLNVFAHNIETVEELQSAVRD---HRANFKQSLDVLMMAKDYVPAGTLTKTS 267 (334)
Q Consensus 206 ~P~i~vE--~L-------------l~~ag~dv~~HnlETv~~l~~~Vr~---r~~tye~sL~vL~~ak~~~p~Gl~tkTg 267 (334)
..+..+. +. +.+.+. .+.--++..+.++...|. ...+|++-++-|+.+++. |+. .+
T Consensus 97 ~~~~~i~~~i~TNG~ll~~e~~~~l~~~~~-~v~ISlDG~~~~hD~~R~~~~g~gsf~~v~~~i~~l~~~---gi~--~~ 170 (412)
T PRK13745 97 ARGRQIDNCIQTNGTLLTDEWCEFFRENNF-LVGVSIDGPQEFHDEYRKNKMGKPSFVKVMKGINLLKKH---GVE--WN 170 (412)
T ss_pred cCCCceEEEEeecCEeCCHHHHHHHHHcCe-EEEEEecCCHHHhhhhcCCCCCCccHHHHHHHHHHHHHc---CCC--EE
Confidence 3333222 22 334443 344445665667776662 146899999999999985 553 34
Q ss_pred eEEec-CCCHHHHHHHHHHHHHcCCcEEeeccCcC
Q 019890 268 IMLGC-GETPDQVVSTMEKVRAAGVDVMTFGQYMR 301 (334)
Q Consensus 268 iMVGl-GETdEE~~etl~~Lre~gvd~vtigqYlr 301 (334)
++.=+ .++-+++.+.+++++++|++.+.+.+++.
T Consensus 171 i~~vv~~~n~~~~~e~~~~~~~lg~~~~~~~p~~~ 205 (412)
T PRK13745 171 AMAVVNDFNADYPLDFYHFFKELDCHYIQFAPIVE 205 (412)
T ss_pred EEEEEcCCccccHHHHHHHHHHcCCCeEEEEeccC
Confidence 45445 78888899999999999999998877664
No 129
>COG4277 Predicted DNA-binding protein with the Helix-hairpin-helix motif [General function prediction only]
Probab=98.04 E-value=1.8e-05 Score=76.80 Aligned_cols=172 Identities=18% Similarity=0.345 Sum_probs=111.7
Q ss_pred EeecCCCCCCCCCcccCCCCC-C-CCCCchhHHHHHHHHHHCCCcE-EEEeeecCCCCCCchHHHHHHHHHHHHhhC--C
Q 019890 133 MILGDTCTRGCRFCNVKTSRA-P-PPPDPDEPTNVAEAIASWGLDY-VVITSVDRDDLADQGSGHFAQTVRKLKELK--P 207 (334)
Q Consensus 133 m~igdgCtr~C~FC~V~~~r~-p-~~ld~~Ep~~~A~av~~~Glke-VVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~--P 207 (334)
+.|+|-|..+|+||+=..+.. | ..+.++|+...--...+-++-+ ..|.|+-.. -+|+-.+.+.++.+.++-.. -
T Consensus 58 iLlTN~CiyDC~YCINr~s~~~pra~ftp~Eiv~ltlnfYrRnYIeGLFLSSGvi~-~~DyTmE~mi~var~LRle~~f~ 136 (404)
T COG4277 58 ILLTNFCIYDCAYCINRSSNDTPRARFTPEEIVDLTLNFYRRNYIEGLFLSSGVIK-NPDYTMEEMIEVARILRLEHKFR 136 (404)
T ss_pred HHHhhhHHHhhHHHhccccCCCcccccCHHHHHHHHHHHHHHhhhhhheecccccc-CcchHHHHHHHHHHHHhhccccC
Confidence 348999999999998755442 3 3579999999887777765543 456555432 37888888888888776432 1
Q ss_pred C-Cceeee-------eccccc--cccccchhhH-HHHHHhhcCCCCCHHHHHHHHHHHH-----------------HhCC
Q 019890 208 N-MLIEAL-------VAKSGL--NVFAHNIETV-EELQSAVRDHRANFKQSLDVLMMAK-----------------DYVP 259 (334)
Q Consensus 208 ~-i~vE~L-------l~~ag~--dv~~HnlETv-~~l~~~Vr~r~~tye~sL~vL~~ak-----------------~~~p 259 (334)
+ ++..++ +.++|+ |.+..|+|+. +.=.+.+. +..++.+.+.-+..+| +..|
T Consensus 137 GYIHlK~IPgas~~li~eaglyadRvSiNIElp~~~~lk~la-p~K~p~dI~r~Mg~ir~~i~e~~e~~~r~r~tp~fap 215 (404)
T COG4277 137 GYIHLKIIPGASPDLIKEAGLYADRVSINIELPTDDGLKLLA-PEKDPTDILRSMGWIRLKILENAEDKRRKRHTPEFAP 215 (404)
T ss_pred cEEEEEecCCCCHHHHHHHhhhhheeEEeEecCCcchhhhhC-CCCChHHHHHHHHHHHHHHhhcccchhhhccCccccC
Confidence 2 444444 555654 7788888864 43344444 2333333333322222 2335
Q ss_pred CcceEeeceEEec-CCCHHHHHHHHHHHHHc-CCcEEeeccCc-CCCCCCCc
Q 019890 260 AGTLTKTSIMLGC-GETPDQVVSTMEKVRAA-GVDVMTFGQYM-RPSKRHMP 308 (334)
Q Consensus 260 ~Gl~tkTgiMVGl-GETdEE~~etl~~Lre~-gvd~vtigqYl-rP~~~h~~ 308 (334)
.| -.|-+|||- ||||++++..-..|-.. +...|....|+ -|+..-+|
T Consensus 216 aG--QSTQmivGA~~~tD~~Ilsrs~~ly~~y~lkRVyySaf~Pv~~s~~lp 265 (404)
T COG4277 216 AG--QSTQMIVGADGETDEDILSRSENLYGRYSLKRVYYSAFSPVPSSPLLP 265 (404)
T ss_pred CC--CceEEEEecCCCchHHHHHHHHHHhhccceeEEEeecccccCCCCCCc
Confidence 44 478999999 99999999988887654 77888888886 34444444
No 130
>PRK14467 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=97.95 E-value=0.0011 Score=65.89 Aligned_cols=188 Identities=11% Similarity=0.161 Sum_probs=111.1
Q ss_pred eEEEEeecCCCCCCCCCcccCCCCCCCCCCchhHHHHHHHHHH----CCCcEEEEee-ecCCCCCCchHHHHHHHHHHHH
Q 019890 129 TATIMILGDTCTRGCRFCNVKTSRAPPPPDPDEPTNVAEAIAS----WGLDYVVITS-VDRDDLADQGSGHFAQTVRKLK 203 (334)
Q Consensus 129 Tatfm~igdgCtr~C~FC~V~~~r~p~~ld~~Ep~~~A~av~~----~GlkeVVLTS-v~rdDl~d~Ga~~fa~lIr~Ik 203 (334)
....+--|.||+-+|.||+-+...-...++.+|+.+++..+.. .++..||+.| |. |-.-.+.+.+.++.++
T Consensus 99 ~t~cvSsq~GC~l~C~FC~t~~~G~~rnlt~~EIv~Qv~~~~~~~~~~~v~~VvfmGmGE----PL~N~d~v~~~l~~l~ 174 (348)
T PRK14467 99 LTLCVSSQVGCAVGCKFCATAKDGLIRNLRTAEIIDQYIQVQKFLGENRIRNVVFMGMGE----PLANYENVRKAVQIMT 174 (348)
T ss_pred cEEEEEcCCCCCCcCcCCCCCCCCCcCCCCHHHHHHHHHHHHHHhccCCCCeEEEEccCh----hhcCHHHHHHHHHHHc
Confidence 3456778999999999998764321246899999988877655 2578999988 54 2222345666666665
Q ss_pred hhCC------CCceeee--------eccc----cccccccchhh-HHHHHHhhcC--CCCCHHHHHHHHHHHH-HhCCCc
Q 019890 204 ELKP------NMLIEAL--------VAKS----GLNVFAHNIET-VEELQSAVRD--HRANFKQSLDVLMMAK-DYVPAG 261 (334)
Q Consensus 204 ~~~P------~i~vE~L--------l~~a----g~dv~~HnlET-v~~l~~~Vr~--r~~tye~sL~vL~~ak-~~~p~G 261 (334)
+... .++|... +... .++. .--+.. .+.+++++.| .++.++..++.++... +....
T Consensus 175 ~~~gl~~~~r~itvsT~G~~~~i~~l~~~~~l~~v~L-alSLha~~~e~r~~i~p~~~~~~l~~l~~~~~~~~~~~g~~- 252 (348)
T PRK14467 175 SPWGLDLSKRRITISTSGIIHQIKRMAEDPVMPEVNL-AVSLNASSQKLRERIMPISKTNTLEELMEVLKQYPLPPGRR- 252 (348)
T ss_pred ChhccCcCCCcEEEECCCChhHHHHHHhhccccCeeE-EEECCCCCHHHHHHhcCCccccCHHHHHHHHHHHHHhcCCe-
Confidence 4210 1222221 1111 1111 111222 2677777663 2346666666665443 22233
Q ss_pred ceEeeceEEecCCCHHHHHHHHHHHHHcC-CcEEeeccCcCCCCCCCcccccC--CHHHHHHHHHHHHH
Q 019890 262 TLTKTSIMLGCGETPDQVVSTMEKVRAAG-VDVMTFGQYMRPSKRHMPVSEYI--TPEAFERYRALGME 327 (334)
Q Consensus 262 l~tkTgiMVGlGETdEE~~etl~~Lre~g-vd~vtigqYlrP~~~h~~v~~yv--~P~~f~~~~~~a~~ 327 (334)
+.+.--+|=|+-.++|++.++.++|+.++ +-.|.+=+|-. .+...|- ++++.+.++++..+
T Consensus 253 V~ieyvLIpGvNDs~e~a~~La~~l~~l~~~~~VnLIPynp-----~~~~~~~~ps~e~i~~f~~~L~~ 316 (348)
T PRK14467 253 IMLEYVLIKGVNDSPEDALRLAQLIGKNKKKFKVNLIPFNP-----DPELPYERPELERVYKFQKILWD 316 (348)
T ss_pred EEEEEEEECCccCCHHHHHHHHHHHhcCCCceEEEEecCCC-----CCCCCCCCCCHHHHHHHHHHHHH
Confidence 66677778899999999999999999974 44555555542 2333333 34445555554433
No 131
>TIGR02494 PFLE_PFLC glycyl-radical enzyme activating protein family. This subset of the radical-SAM family (pfam04055) includes a number of probable activating proteins acting on different enzymes all requiring an amino-acid-centered radical. The closest relatives to this family are the pyruvate-formate lyase activating enzyme (PflA, 1.97.1.4, TIGR02493) and the anaerobic ribonucleotide reductase activating enzyme (TIGR02491). Included within this subfamily are activators of hydroxyphenyl acetate decarboxylase (HdpA, ), benzylsuccinate synthase (BssD, ), gycerol dehydratase (DhaB2, ) as well as enzymes annotated in E. coli as activators of different isozymes of pyruvate-formate lyase (PFLC and PFLE) however, these appear to lack characterization and may activate enzymes with distinctive functions. Most of the sequence-level variability between these forms is concentrated within an N-terminal domain which follows a conserved group of three cysteines and contains a variable pattern of 0
Probab=97.91 E-value=0.0004 Score=66.23 Aligned_cols=162 Identities=14% Similarity=0.111 Sum_probs=104.7
Q ss_pred CCCchhHHHHHHHHHH---CCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhCCCCceeee------------eccccc
Q 019890 156 PPDPDEPTNVAEAIAS---WGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEAL------------VAKSGL 220 (334)
Q Consensus 156 ~ld~~Ep~~~A~av~~---~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~P~i~vE~L------------l~~ag~ 220 (334)
..+.+++.+.++.... .+...|+++|+.. -.-.+.+.++++.+++. ++.+.+. +.. ..
T Consensus 105 ~~t~eel~~~i~~~~~~~~~~~~~V~~sGGEP----ll~~~~l~~l~~~~k~~--g~~~~i~TnG~~~~~~~~~ll~-~~ 177 (295)
T TIGR02494 105 EMTVEEVMRVVLRDSIFYRNSGGGVTLSGGEP----LLQPEFALALLQACHER--GIHTAVETSGFTPWETIEKVLP-YV 177 (295)
T ss_pred CCcHHHHHHHHHHHHHhcccCCCcEEeeCcch----hchHHHHHHHHHHHHHc--CCcEeeeCCCCCCHHHHHHHHh-hC
Confidence 3566777766654332 2446899999763 22234456889988875 2333222 111 23
Q ss_pred cccccchhhH-HHHHHhhcCCCCCHHHHHHHHHHHHHhCCCcceEeeceEEecCCCHHHHHHHHHHHHHcC--CcEEeec
Q 019890 221 NVFAHNIETV-EELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAG--VDVMTFG 297 (334)
Q Consensus 221 dv~~HnlETv-~~l~~~Vr~r~~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGlGETdEE~~etl~~Lre~g--vd~vtig 297 (334)
|++.--+... ++.|.+++ +.+++..++.|+.+.+.... +.+.+-+|-|+-.+.+|+.+.++++++++ ++.+.+.
T Consensus 178 d~~~isl~~~~~~~~~~~~--g~~~~~vl~~i~~l~~~~~~-~~i~~~~v~~~n~~~~ei~~l~~~~~~~~~~v~~v~l~ 254 (295)
T TIGR02494 178 DLFLFDIKHLDDERHKEVT--GVDNEPILENLEALAAAGKN-VVIRIPVIPGFNDSEENIEAIAAFLRKLEPGVDEIDLL 254 (295)
T ss_pred CEEEEeeccCChHHHHHHh--CCChHHHHHHHHHHHhCCCc-EEEEeceeCCcCCCHHHHHHHHHHHHHhccCCceEEec
Confidence 3333334433 67788877 46788899999999886444 56677778888889999999999999998 8899998
Q ss_pred cCcCCCC-------CCCccccc--CCHHHHHHHHHHHHH
Q 019890 298 QYMRPSK-------RHMPVSEY--ITPEAFERYRALGME 327 (334)
Q Consensus 298 qYlrP~~-------~h~~v~~y--v~P~~f~~~~~~a~~ 327 (334)
+|..-+. +..++.++ .+.++.+.++++..+
T Consensus 255 ~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 293 (295)
T TIGR02494 255 PYHRLGENKYRQLGREYPDSEIPDPAEEQLLELKEIFES 293 (295)
T ss_pred CCCchhHHHHHHhCCCCccCCCCCCCHHHHHHHHHHHHh
Confidence 8875332 23444444 455566666655543
No 132
>PRK11194 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=97.91 E-value=0.0014 Score=65.79 Aligned_cols=186 Identities=11% Similarity=0.135 Sum_probs=105.9
Q ss_pred EEEeecCCCCCCCCCcccCCCCCCCCCCchhHHHHHHHHHHC--------C--CcEEEEeeecCCCCCCchHHHHHHHHH
Q 019890 131 TIMILGDTCTRGCRFCNVKTSRAPPPPDPDEPTNVAEAIASW--------G--LDYVVITSVDRDDLADQGSGHFAQTVR 200 (334)
Q Consensus 131 tfm~igdgCtr~C~FC~V~~~r~p~~ld~~Ep~~~A~av~~~--------G--lkeVVLTSv~rdDl~d~Ga~~fa~lIr 200 (334)
.-+.-|-||+-+|.||+-+...-...+..+|+.+++..+... | ++.||..|..- |-.-.+.+.+.++
T Consensus 105 ~CvSsQvGC~~~C~FC~t~~~g~~rnLt~~EIv~Qv~~~~~~~~~~~~~gg~~~~nvV~mGmGE---PL~N~d~v~~al~ 181 (372)
T PRK11194 105 LCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGAAKVTGQRPITNVVMMGMGE---PLLNLNNVVPAME 181 (372)
T ss_pred EEEecCCCCCCcCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHhhhccccCCcccceEEEecCCc---cccCHHHHHHHHH
Confidence 345567899999999986643212458899999888665432 2 88999988431 2112334456666
Q ss_pred HHHhhCC------CCceeee--------eccccccc-cccchh-hHHHHHHhhcC--CCCCHHHHHHHHHHHHHhC----
Q 019890 201 KLKELKP------NMLIEAL--------VAKSGLNV-FAHNIE-TVEELQSAVRD--HRANFKQSLDVLMMAKDYV---- 258 (334)
Q Consensus 201 ~Ik~~~P------~i~vE~L--------l~~ag~dv-~~HnlE-Tv~~l~~~Vr~--r~~tye~sL~vL~~ak~~~---- 258 (334)
.+++... .++|+.. +.+.. ++ ++.-+. +.+..++.+-| .++..++.++.+++.-+..
T Consensus 182 ~l~~~~g~~i~~r~itVsTsG~~~~i~~l~~~~-d~~LaiSLha~d~e~R~~lmPin~~~~l~~ll~a~~~y~~~~~~~~ 260 (372)
T PRK11194 182 IMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMI-DVALAISLHAPNDELRDEIVPINKKYNIETFLAAVRRYLEKSNANQ 260 (372)
T ss_pred HHhhhhccCcCCCeEEEECCCCchHHHHHHhcc-CeEEEeeccCCCHHHHHHhcCCcccccHHHHHHHHHHHHHhcccCC
Confidence 6654321 2333322 22211 21 111111 12455555442 2344566665544443322
Q ss_pred CCcceEeeceEEecCCCHHHHHHHHHHHHHcCCcEEeeccCcCCCCCCCccccc--CCHHHHHHHHHHHHH
Q 019890 259 PAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMPVSEY--ITPEAFERYRALGME 327 (334)
Q Consensus 259 p~Gl~tkTgiMVGlGETdEE~~etl~~Lre~gvd~vtigqYlrP~~~h~~v~~y--v~P~~f~~~~~~a~~ 327 (334)
.. +.+.--+|=|+--++|++.++.++|+.+++ .|.+=+|-. ++...| .+++..+.+.++..+
T Consensus 261 rr-I~irypLIpGvNDs~e~a~~La~ll~~l~~-~VnLIPYN~-----~~~~~~~~ps~e~v~~f~~~L~~ 324 (372)
T PRK11194 261 GR-VTVEYVMLDHVNDGTEHAHQLAELLKDTPC-KINLIPWNP-----FPGAPYGRSSNSRIDRFSKVLME 324 (372)
T ss_pred Ce-EEEEEEeECCCCCCHHHHHHHHHHHhcCCc-eEEEecCCC-----CCCCCCCCCCHHHHHHHHHHHHH
Confidence 23 778899999999999999999999999865 566655542 112223 344445555555443
No 133
>PRK14464 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=97.86 E-value=0.00061 Score=67.58 Aligned_cols=163 Identities=12% Similarity=0.137 Sum_probs=92.8
Q ss_pred EEeecCCCCCCCCCcccCCCCCCCCCCchhHHHHHHHHHHC-CCcEEEEee-ecCCCCCCchHHHHHHHHHHHHhh----
Q 019890 132 IMILGDTCTRGCRFCNVKTSRAPPPPDPDEPTNVAEAIASW-GLDYVVITS-VDRDDLADQGSGHFAQTVRKLKEL---- 205 (334)
Q Consensus 132 fm~igdgCtr~C~FC~V~~~r~p~~ld~~Ep~~~A~av~~~-GlkeVVLTS-v~rdDl~d~Ga~~fa~lIr~Ik~~---- 205 (334)
.+.-|.||+.+|+||.-....-...++++|+.++...+.+. .+++||+.| |+. +. ..+...+.|+.|.+.
T Consensus 99 CvSsQvGC~~~C~FC~tg~~g~~RnLs~~EI~~Qv~~~~~~~~i~nIVfmGmGEP--l~--N~d~vl~ai~~l~~~~~i~ 174 (344)
T PRK14464 99 CVSTQVGCAVGCVFCMTGRSGLLRQLGSAEIVAQVVLARRRRAVKKVVFMGMGEP--AH--NLDNVLEAIDLLGTEGGIG 174 (344)
T ss_pred EEEccCCcCCCCCcCcCCCCCCCCCCCHHHHHHHHHHHHhcCCCCEEEEeccCcc--cC--CHHHHHHHHHHhhchhcCC
Confidence 44568999999999976532212357899999888877664 589999999 552 21 122333333333322
Q ss_pred CCCCceeee--------eccccccc-cccchhh-HHHHHHhhcC--CCCCHHHHHHHHHHHHHhCCCcceEeeceEEecC
Q 019890 206 KPNMLIEAL--------VAKSGLNV-FAHNIET-VEELQSAVRD--HRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCG 273 (334)
Q Consensus 206 ~P~i~vE~L--------l~~ag~dv-~~HnlET-v~~l~~~Vr~--r~~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGlG 273 (334)
.+.++|..+ +.+..+.+ ++--+.. .+.++..+-| ++++.++-++.++...+....-+.+-.-+|=|+.
T Consensus 175 ~r~itiST~G~~~~i~rL~~~~v~~~LaiSLhA~~~e~R~~imP~~~~~~l~el~~a~~~~~~~~grri~~EyvLl~GVN 254 (344)
T PRK14464 175 HKNLVFSTVGDPRVFERLPQQRVKPALALSLHTTRAELRARLLPRAPRIAPEELVELGEAYARATGYPIQYQWTLLEGVN 254 (344)
T ss_pred CceEEEecccCchHHHHHHHhcCChHHHHHhcCCChhHhheeCCccCCCCHHHHHHHHHHHHHHHCCEEEEEEEEeCCCC
Confidence 111222211 33222221 1111221 1444444442 4678888888777766543221222333444889
Q ss_pred CCHHHHHHHHHHHHHcCCcEEeeccC
Q 019890 274 ETPDQVVSTMEKVRAAGVDVMTFGQY 299 (334)
Q Consensus 274 ETdEE~~etl~~Lre~gvd~vtigqY 299 (334)
.+.|+..++.+.|+...+. |.+=+|
T Consensus 255 Ds~e~a~~L~~~l~~~~~~-vNLIPy 279 (344)
T PRK14464 255 DSDEEMDGIVRLLKGKYAV-MNLIPY 279 (344)
T ss_pred CCHHHHHHHHHHHhccccc-cceecC
Confidence 9999999999999977553 344345
No 134
>COG2100 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=97.82 E-value=0.00041 Score=68.25 Aligned_cols=180 Identities=17% Similarity=0.238 Sum_probs=114.1
Q ss_pred ecCCCCCCCCCcccCCC---CCC---CCCCchhHHHHHHHHHHC--CCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhC
Q 019890 135 LGDTCTRGCRFCNVKTS---RAP---PPPDPDEPTNVAEAIASW--GLDYVVITSVDRDDLADQGSGHFAQTVRKLKELK 206 (334)
Q Consensus 135 igdgCtr~C~FC~V~~~---r~p---~~ld~~Ep~~~A~av~~~--GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~ 206 (334)
-+.+|+.+|-||+|..+ |.. .-.|+|-..+-.+.+++. +-=|..|-|+.-.- ---|+.++|+++++.
T Consensus 113 p~tgCnlnCIfCSVdeGp~SrtR~~dy~Vd~eyLl~w~~kVa~~KgkglEaHlDGqGEP~----lYP~l~~lVqalk~~- 187 (414)
T COG2100 113 PSTGCNLNCIFCSVDEGPYSRTRKLDYVVDPEYLLEWFEKVARFKGKGLEAHLDGQGEPL----LYPHLVDLVQALKEH- 187 (414)
T ss_pred CCccccceeEEEeccCCcccceeccceEecHHHHHHHHHHHHhhhCCCeEEEecCCCCCc----cchhHHHHHHHHhcC-
Confidence 45699999999999643 311 125677666666666553 22356666654211 124899999999875
Q ss_pred CCCceeee--------------eccccccccccchhhH-HHHHHhhcC-CCCCHHHHHHHHHHHHHhCCCcceEeeceEE
Q 019890 207 PNMLIEAL--------------VAKSGLNVFAHNIETV-EELQSAVRD-HRANFKQSLDVLMMAKDYVPAGTLTKTSIML 270 (334)
Q Consensus 207 P~i~vE~L--------------l~~ag~dv~~HnlETv-~~l~~~Vr~-r~~tye~sL~vL~~ak~~~p~Gl~tkTgiMV 270 (334)
|++.+--+ +.++|+|.+|-.++.. |++-+.+.. .-|+.+.-|++.+.+.+. |+-+=-.=.+
T Consensus 188 ~~v~vVSmQTng~~L~~~lv~eLeeAGLdRiNlSv~aLDpk~Ak~L~G~~dYdv~kvle~aE~i~~a---~idvlIaPv~ 264 (414)
T COG2100 188 KGVEVVSMQTNGVLLSKKLVDELEEAGLDRINLSVDALDPKLAKMLAGRKDYDVKKVLEVAEYIANA---GIDVLIAPVW 264 (414)
T ss_pred CCceEEEEeeCceeccHHHHHHHHHhCCceEEeecccCCHHHHHHhcCccccCHHHHHHHHHHHHhC---CCCEEEeeee
Confidence 66432111 8899999999888765 556555542 247888899999998874 3322111122
Q ss_pred ecCCCHHHHHHHHHHHHHcCCc----EEeeccCcC--CCCCCCcccccCCHHHHHHHHH
Q 019890 271 GCGETPDQVVSTMEKVRAAGVD----VMTFGQYMR--PSKRHMPVSEYITPEAFERYRA 323 (334)
Q Consensus 271 GlGETdEE~~etl~~Lre~gvd----~vtigqYlr--P~~~h~~v~~yv~P~~f~~~~~ 323 (334)
=.|=.|+|+...+.+.+++|.- .++|-.|.. =+.+- .+.+-++=.+|-+|-.
T Consensus 265 lPG~ND~E~~~iIe~A~~iGaGkk~p~lgiQkyipyk~GRkp-~~~k~~~fkeFYrwLr 322 (414)
T COG2100 265 LPGVNDDEMPKIIEWAREIGAGKKWPPLGIQKYIPYKFGRKP-VIAKVWPFKEFYRWLR 322 (414)
T ss_pred cCCcChHHHHHHHHHHHHhCCCCCCCCcceEEeeeecccCCc-cccccCcHHHHHHHHH
Confidence 2488899999999999999865 345444431 11221 3455666677766643
No 135
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=97.77 E-value=0.00041 Score=64.45 Aligned_cols=153 Identities=19% Similarity=0.271 Sum_probs=109.7
Q ss_pred CCCchhHHHHHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhCCCCceeee----------ecccccccccc
Q 019890 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEAL----------VAKSGLNVFAH 225 (334)
Q Consensus 156 ~ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~P~i~vE~L----------l~~ag~dv~~H 225 (334)
.++.++..++++.+.+.|+++|-+++....+.... .....+.++.+++..|++.+-++ +.++|.+.+.-
T Consensus 15 ~~s~e~~~~i~~~L~~~GV~~IEvg~~~~~~~~p~-~~~~~~~i~~l~~~~~~~~~~~l~~~~~~~i~~a~~~g~~~i~i 93 (265)
T cd03174 15 TFSTEDKLEIAEALDEAGVDSIEVGSGASPKAVPQ-MEDDWEVLRAIRKLVPNVKLQALVRNREKGIERALEAGVDEVRI 93 (265)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEeccCcCcccccc-CCCHHHHHHHHHhccCCcEEEEEccCchhhHHHHHhCCcCEEEE
Confidence 57899999999999999999999998764211000 12246788888887666555444 56667666555
Q ss_pred chhhHHHHHHhh--c-CCCCCHHHHHHHHHHHHHhCCCcceEeeceEEecC--CCHHHHHHHHHHHHHcCCcEEeeccCc
Q 019890 226 NIETVEELQSAV--R-DHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCG--ETPDQVVSTMEKVRAAGVDVMTFGQYM 300 (334)
Q Consensus 226 nlETv~~l~~~V--r-~r~~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGlG--ETdEE~~etl~~Lre~gvd~vtigqYl 300 (334)
-+.+++ .+... + ++...++..++.++.+++. |+.+.-.++.-++ .+.+++.+.++.+.++|++.+.+.
T Consensus 94 ~~~~s~-~~~~~~~~~~~~~~~~~~~~~i~~a~~~---G~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~i~l~--- 166 (265)
T cd03174 94 FDSASE-THSRKNLNKSREEDLENAEEAIEAAKEA---GLEVEGSLEDAFGCKTDPEYVLEVAKALEEAGADEISLK--- 166 (265)
T ss_pred EEecCH-HHHHHHhCCCHHHHHHHHHHHHHHHHHC---CCeEEEEEEeecCCCCCHHHHHHHHHHHHHcCCCEEEec---
Confidence 554443 22222 2 1233688888999999986 7888888888888 999999999999999999998865
Q ss_pred CCCCCCCcccccCCHHHHHHHHH
Q 019890 301 RPSKRHMPVSEYITPEAFERYRA 323 (334)
Q Consensus 301 rP~~~h~~v~~yv~P~~f~~~~~ 323 (334)
++ ....+|+++..+=.
T Consensus 167 -Dt------~G~~~P~~v~~li~ 182 (265)
T cd03174 167 -DT------VGLATPEEVAELVK 182 (265)
T ss_pred -hh------cCCcCHHHHHHHHH
Confidence 33 45688887665533
No 136
>PRK14454 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=97.76 E-value=0.0028 Score=62.81 Aligned_cols=189 Identities=8% Similarity=0.142 Sum_probs=107.0
Q ss_pred eEEEEeecCCCCCCCCCcccCCCCCCCCCCchhHHHHHHHHHHC---CCcEEEEee-ecCCCCCCchHHHHHHHHHHHHh
Q 019890 129 TATIMILGDTCTRGCRFCNVKTSRAPPPPDPDEPTNVAEAIASW---GLDYVVITS-VDRDDLADQGSGHFAQTVRKLKE 204 (334)
Q Consensus 129 Tatfm~igdgCtr~C~FC~V~~~r~p~~ld~~Ep~~~A~av~~~---GlkeVVLTS-v~rdDl~d~Ga~~fa~lIr~Ik~ 204 (334)
....+..+.||+-+|.||+-....-...++++|+.+++...... .++-||.-| +. |-.-.+.+.++++.+++
T Consensus 101 ~t~cvSsqvGC~~~C~FC~tg~~G~~rnlt~~EI~~qv~~~~~~~~~~~~gvV~mggGE----PLln~d~v~~~l~~l~~ 176 (342)
T PRK14454 101 NSICVSTQVGCRMGCKFCASTIGGMVRNLTAGEMLDQILAAQNDIGERISNIVLMGSGE----PLDNYENVMKFLKIVNS 176 (342)
T ss_pred CEEEEEcCCCCCCcCCcCCCCCCCCcccCCHHHHHHHHHHHHHHhcCCCCCEEEECCch----hhcCHHHHHHHHHHHhc
Confidence 34677789999999999975432212358999999998876652 355656433 43 22223456677777765
Q ss_pred hCCCC-------ceeee--------eccccccc-cccchhh-HHHHHHhhcC--CCCCHHHHHHHHHH-HHHhCCCcceE
Q 019890 205 LKPNM-------LIEAL--------VAKSGLNV-FAHNIET-VEELQSAVRD--HRANFKQSLDVLMM-AKDYVPAGTLT 264 (334)
Q Consensus 205 ~~P~i-------~vE~L--------l~~ag~dv-~~HnlET-v~~l~~~Vr~--r~~tye~sL~vL~~-ak~~~p~Gl~t 264 (334)
.. ++ .|+.. +.+.++.+ +..-+.. -+..++.+-+ ..+..++.++.++. ..+.... +.+
T Consensus 177 ~~-gi~~~~r~itvsTsG~~p~i~~l~~~~~~~~laisLka~d~e~r~~l~pv~~~~~L~~l~~~~~~~~~~~~~r-v~i 254 (342)
T PRK14454 177 PY-GLNIGQRHITLSTCGIVPKIYELADENLQITLAISLHAPNDELRKKMMPIANKYSIEELIEACKYYINKTNRR-ITF 254 (342)
T ss_pred cc-ccCcCCCceEEECcCChhHHHHHHhhcccceEEEecCCCCHHHHHHhcCCcccCCHHHHHHHHHHHHHHhCCE-EEE
Confidence 21 23 33332 33322111 1111211 2445555442 34556666655554 3333222 556
Q ss_pred eeceEEecCCCHHHHHHHHHHHHHcCCcEEeeccCcCCCCCCCcccccCCHHHHHHHHHHHHH
Q 019890 265 KTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMPVSEYITPEAFERYRALGME 327 (334)
Q Consensus 265 kTgiMVGlGETdEE~~etl~~Lre~gvd~vtigqYlrP~~~h~~v~~yv~P~~f~~~~~~a~~ 327 (334)
.--+|=|+..++||+.++.++++.+.+ .|.+=+|-......+ +-.++++.+.++++..+
T Consensus 255 ey~LI~gvNDs~eda~~La~llk~l~~-~VnLiPyn~~~~~~~---~~ps~e~l~~f~~~l~~ 313 (342)
T PRK14454 255 EYALVKGVNDSKEDAKELGKLLKGMLC-HVNLIPVNEVKENGF---KKSSKEKIKKFKNILKK 313 (342)
T ss_pred EEEeECCCCCCHHHHHHHHHHHhcCCc-eEEEEecCCCCCCCC---CCCCHHHHHHHHHHHHH
Confidence 777888999999999999999998743 555555543222111 12345566666665544
No 137
>PRK14462 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=97.69 E-value=0.0028 Score=63.16 Aligned_cols=185 Identities=11% Similarity=0.120 Sum_probs=110.4
Q ss_pred EEeecCCCCCCCCCcccCCCCCCCCCCchhHHHHHHHHHHC------CCcEEEEeeecCCCCCCchHHHHHHHHHHHHhh
Q 019890 132 IMILGDTCTRGCRFCNVKTSRAPPPPDPDEPTNVAEAIASW------GLDYVVITSVDRDDLADQGSGHFAQTVRKLKEL 205 (334)
Q Consensus 132 fm~igdgCtr~C~FC~V~~~r~p~~ld~~Ep~~~A~av~~~------GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~ 205 (334)
-+.-+.||..+|.||+-+...-...+.++|+.+++..+... .+..||+.|+.- |-...+.+.++++.+++.
T Consensus 113 CvSsQvGC~~~C~FCatg~~g~~RnLt~~EIv~QV~~~~~~~~~~~~~~~~vVfmGmGE---PL~N~d~v~~~l~~l~~~ 189 (356)
T PRK14462 113 CVSSQVGCKVGCAFCLTAKGGFVRNLSAGEIVGQILWIKKDNNIPYEKRVNIVYMGMGE---PLDNLDNVSKAIKIFSEN 189 (356)
T ss_pred eeeccccCCCCCccCCCCCCCCcccCCHHHHHHHHHHHHHhhhccccccCCeEEeCCcc---cccCHHHHHHHHHHhcCc
Confidence 34558899999999965543212468999999998866553 245777774421 222345666777777653
Q ss_pred CCCC-------ceeee--------eccccccc-cccchhh-HHHHHHhhcC--CCCCHHHHHHHHHHH-HHhCCCcceEe
Q 019890 206 KPNM-------LIEAL--------VAKSGLNV-FAHNIET-VEELQSAVRD--HRANFKQSLDVLMMA-KDYVPAGTLTK 265 (334)
Q Consensus 206 ~P~i-------~vE~L--------l~~ag~dv-~~HnlET-v~~l~~~Vr~--r~~tye~sL~vL~~a-k~~~p~Gl~tk 265 (334)
. ++ +|+.. +.+..+.+ ++..+.. -+..++++-| .++..++.++.++.. ++.... +.+.
T Consensus 190 ~-Gl~~~~r~itVsTsG~~~~i~~L~~~dl~v~LaiSLha~d~e~r~~l~pv~~~~~l~~ll~~l~~y~~~~~~~-i~ie 267 (356)
T PRK14462 190 D-GLAISPRRQTISTSGLASKIKKLGEMNLGVQLAISLHAVDDELRSELMPINKAYNIESIIDAVRKFPIDQRKR-VMFE 267 (356)
T ss_pred c-CCCcCCCceEEECCCChHHHHHHHhcCCCeEEEEECCCCCHHHHHHhCCCCccCCHHHHHHHHHHHHHHhCCe-EEEE
Confidence 1 33 33322 33322211 2111111 2455555542 345568888877643 343333 6678
Q ss_pred eceEEecCCCHHHHHHHHHHHHHcCCcEEeeccCcCCCCCCCccccc--CCHHHHHHHHHHHHH
Q 019890 266 TSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMPVSEY--ITPEAFERYRALGME 327 (334)
Q Consensus 266 TgiMVGlGETdEE~~etl~~Lre~gvd~vtigqYlrP~~~h~~v~~y--v~P~~f~~~~~~a~~ 327 (334)
--+|=|+--++||..++.++|+.+++ .|.+=+|-. ++...| .+++..+.++++..+
T Consensus 268 yvLI~GvNDs~e~a~~La~llk~l~~-~VnLIPyn~-----~~~~~~~~ps~e~i~~f~~~l~~ 325 (356)
T PRK14462 268 YLVIKDVNDDLKSAKKLVKLLNGIKA-KVNLILFNP-----HEGSKFERPSLEDMIKFQDYLNS 325 (356)
T ss_pred EEEECCCCCCHHHHHHHHHHHhhcCc-EEEEEeCCC-----CCCCCCCCCCHHHHHHHHHHHHH
Confidence 88888999999999999999999875 666666652 222233 345566666665443
No 138
>COG1180 PflA Pyruvate-formate lyase-activating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=97.55 E-value=0.0074 Score=57.54 Aligned_cols=184 Identities=14% Similarity=0.147 Sum_probs=112.9
Q ss_pred EEEEeecCCCCCCCCCcccCCCCC---CC---CCCchhHHHHHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHH
Q 019890 130 ATIMILGDTCTRGCRFCNVKTSRA---PP---PPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLK 203 (334)
Q Consensus 130 atfm~igdgCtr~C~FC~V~~~r~---p~---~ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik 203 (334)
..|.+..-||+.+|.||.=+.... +. .++++++...+. ...+.+-|++||+. |---.+.+.+++++.|
T Consensus 36 ~~~~vf~~GCnlrC~~C~N~~~~~~~~~~~~~~~~~e~l~~~~~--~~~~~~gvt~SGGE----P~~q~e~~~~~~~~ak 109 (260)
T COG1180 36 IRLSVFLQGCNLRCPYCQNPEISQRGREVSGEEVSPEVLVDKAF--YSESGGGVTFSGGE----PTLQAEFALDLLRAAK 109 (260)
T ss_pred EEEEEEeCCCCCCCCCCCChhHhcccccCchhhcCHHHHHHHhh--hcCCCCEEEEECCc----chhhHHHHHHHHHHHH
Confidence 444445569999999997554321 11 123333333332 23367889999986 3333567788888888
Q ss_pred hhCCCCceeee------------eccccccccccchhh-HHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCcceEeeceEE
Q 019890 204 ELKPNMLIEAL------------VAKSGLNVFAHNIET-VEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIML 270 (334)
Q Consensus 204 ~~~P~i~vE~L------------l~~ag~dv~~HnlET-v~~l~~~Vr~r~~tye~sL~vL~~ak~~~p~Gl~tkTgiMV 270 (334)
+. ++.+-+- +.+. .|.++-=+.. .+.+|+.+. .++-+..++.++.+++.... +.+++-++=
T Consensus 110 e~--Gl~~~l~TnG~~~~~~~~~l~~~-~D~v~~DlK~~~~~~y~~~t--g~~~~~vl~~~~~l~~~g~~-ve~r~lviP 183 (260)
T COG1180 110 ER--GLHVALDTNGFLPPEALEELLPL-LDAVLLDLKAFDDELYRKLT--GADNEPVLENLELLADLGVH-VEIRTLVIP 183 (260)
T ss_pred HC--CCcEEEEcCCCCCHHHHHHHHhh-cCeEEEeeccCChHHHHHHh--CCCcHHHHHHHHHHHcCCCe-EEEEEEEEC
Confidence 75 4333221 1111 2222222222 266788887 45559999999999986444 667888888
Q ss_pred ecCCCHHHHHHHHHHHHHc-CCcEEeeccCcCCCCCCC-cccccCCHHHHHHHHHHHHHh
Q 019890 271 GCGETPDQVVSTMEKVRAA-GVDVMTFGQYMRPSKRHM-PVSEYITPEAFERYRALGMEM 328 (334)
Q Consensus 271 GlGETdEE~~etl~~Lre~-gvd~vtigqYlrP~~~h~-~v~~yv~P~~f~~~~~~a~~~ 328 (334)
|+...++|+.+..+++.++ ...-+++-+|-++..... |.. ..+..+...+.|.+.
T Consensus 184 g~~d~~e~i~~i~~~i~~~~~~~p~~~l~fhp~~~~~~~p~~---~~~~le~~~~~a~~~ 240 (260)
T COG1180 184 GYNDDEEEIRELAEFIADLGPEIPIHLLRFHPDYKLKDLPPT---PVETLEEAKKLAKEE 240 (260)
T ss_pred CCCCCHHHHHHHHHHHHhcCCcccEEEeccccCccccccCCC---cHHHHHHhHhhhHHH
Confidence 9999999999999999975 456777777776655433 222 233344444455443
No 139
>TIGR03365 Bsubt_queE 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. This uncharacterized enzyme, designated QueE, participates in the biosynthesis, from GTP, of 7-cyano-7-deazaguanosine, also called preQ0 because in many species it is a precursor of queuosine. In most Archaea, it is instead the precursor of a different tRNA modified base, archaeosine.
Probab=97.51 E-value=0.00075 Score=63.27 Aligned_cols=71 Identities=11% Similarity=0.143 Sum_probs=51.7
Q ss_pred eEEEEeecCCCCCCCCCcccCCCC--CC----CCCCchhHHHHHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHH
Q 019890 129 TATIMILGDTCTRGCRFCNVKTSR--AP----PPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKL 202 (334)
Q Consensus 129 Tatfm~igdgCtr~C~FC~V~~~r--~p----~~ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~I 202 (334)
.+.|+. ..+|+-+|.||.-+..- +. ..++.+|+.+.++.+...|.+.|+|||+.- +-. .+|.++++.+
T Consensus 23 ~~~FvR-~~gCNlrC~~Cdt~~~~~~~~~~~~~~~s~~ei~~~i~~~~~~~~~~V~lTGGEP--ll~---~~l~~li~~l 96 (238)
T TIGR03365 23 KTMFVR-TGGCDYRCSWCDSLFTWDGSAKDTWRPMTAEEVWQELKALGGGTPLHVSLSGGNP--ALQ---KPLGELIDLG 96 (238)
T ss_pred eEEEEE-eCCcCCcCcCCCCccccCcccCCccccCCHHHHHHHHHHHhCCCCCeEEEeCCch--hhh---HhHHHHHHHH
Confidence 566666 56999999999866421 11 136888888888877777899999999873 111 3588999999
Q ss_pred Hhh
Q 019890 203 KEL 205 (334)
Q Consensus 203 k~~ 205 (334)
++.
T Consensus 97 ~~~ 99 (238)
T TIGR03365 97 KAK 99 (238)
T ss_pred HHC
Confidence 875
No 140
>COG2108 Uncharacterized conserved protein related to pyruvate formate-lyase activating enzyme [General function prediction only]
Probab=97.51 E-value=0.00076 Score=66.22 Aligned_cols=147 Identities=18% Similarity=0.322 Sum_probs=96.3
Q ss_pred EEeecCCCCCCCCCcccCCCCC---C-----CC-CCchhHHHHHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHH
Q 019890 132 IMILGDTCTRGCRFCNVKTSRA---P-----PP-PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKL 202 (334)
Q Consensus 132 fm~igdgCtr~C~FC~V~~~r~---p-----~~-ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~I 202 (334)
-+-++..|+++|-||-++..|. + .+ -+.+++..+|+...+.|. -+||++ |---.+...+.|+.+
T Consensus 31 VlFvTG~C~~~CfYCPvs~~r~gkdviyaNErpV~~~eDii~ea~~~~a~Ga---siTGGd----Pl~~ieR~~~~ir~L 103 (353)
T COG2108 31 VLFVTGLCNRSCFYCPVSDERKGKDVIYANERPVKSVEDIIEEAKLMDALGA---SITGGD----PLLEIERTVEYIRLL 103 (353)
T ss_pred EEEEecccCCCcccCcCCHHhcCCcceeecccccCcHHHHHHHHHHhccccc---cccCCC----hHHHHHHHHHHHHHH
Confidence 4445899999999999986442 1 12 245666666665555554 488886 333345667788888
Q ss_pred HhhCC-CCceeee-------------eccccccccccchhhHHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCcceEeece
Q 019890 203 KELKP-NMLIEAL-------------VAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSI 268 (334)
Q Consensus 203 k~~~P-~i~vE~L-------------l~~ag~dv~~HnlETv~~l~~~Vr~r~~tye~sL~vL~~ak~~~p~Gl~tkTgi 268 (334)
|+.+. +.+++++ |.+||+|-+-.|.. ... -...+.+++.|+.|++. |+- .|+
T Consensus 104 K~efG~~fHiHLYT~g~~~~~e~l~~L~eAGLDEIRfHp~----~~~-----~~~~e~~i~~l~~A~~~---g~d--vG~ 169 (353)
T COG2108 104 KDEFGEDFHIHLYTTGILATEEALKALAEAGLDEIRFHPP----RPG-----SKSSEKYIENLKIAKKY---GMD--VGV 169 (353)
T ss_pred HHhhccceeEEEeeccccCCHHHHHHHHhCCCCeEEecCC----Ccc-----ccccHHHHHHHHHHHHh---Ccc--cee
Confidence 87763 3667665 78888886655521 111 12356778888888875 322 222
Q ss_pred EEe-cCCCHHHHHHHHHHHHHcCCcEEeeccC
Q 019890 269 MLG-CGETPDQVVSTMEKVRAAGVDVMTFGQY 299 (334)
Q Consensus 269 MVG-lGETdEE~~etl~~Lre~gvd~vtigqY 299 (334)
=+= .=.-++.+.+..+.+.+.++|.+.+++.
T Consensus 170 EiPaipg~e~~i~e~~~~~~~~~~~FlNiNEL 201 (353)
T COG2108 170 EIPAIPGEEEAILEFAKALDENGLDFLNINEL 201 (353)
T ss_pred ecCCCcchHHHHHHHHHHHHhcccceeeeeee
Confidence 222 2334667899999999999999999864
No 141
>PRK14465 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=97.49 E-value=0.0094 Score=59.18 Aligned_cols=188 Identities=10% Similarity=0.031 Sum_probs=105.9
Q ss_pred EEEeecCCCCCCCCCcccCCCCCCCCCCchhHHHHHHHHHH---CCCcEEEEee-ecCCCCCCchHHHHHHHHHHHHhhC
Q 019890 131 TIMILGDTCTRGCRFCNVKTSRAPPPPDPDEPTNVAEAIAS---WGLDYVVITS-VDRDDLADQGSGHFAQTVRKLKELK 206 (334)
Q Consensus 131 tfm~igdgCtr~C~FC~V~~~r~p~~ld~~Ep~~~A~av~~---~GlkeVVLTS-v~rdDl~d~Ga~~fa~lIr~Ik~~~ 206 (334)
.-+--|-||+.+|+||+-....-...+...|+...+-.+.+ ..+..||+-| +. |-...+.+.+.++.|++..
T Consensus 107 ~CvSsQvGC~m~C~FC~tg~~g~~rnlta~EI~~qv~~~~~~~~~~~~niVFmGmGE----PL~N~d~V~~~~~~l~~~~ 182 (342)
T PRK14465 107 ICISSQIGCTLNCKFCATAKLEFQGNLKAHEIVDQVLQVEKIVGDRATNVVFMGMGE----PMHNYFNVIRAASILHDPD 182 (342)
T ss_pred EEEEecCCCCCCCCCCcCCCCCccCCCCHHHHHHHHHHHHHhcCCCceEEEEEcCCc----chhhHHHHHHHHHHHhChh
Confidence 34556889999999998765332346889999988877765 3588999988 54 2112233444444444321
Q ss_pred -CC-----Cceeee--------ecccccc-ccccchhh-HHHHHHhhcC--CCCCHHHHHHHHHHHHHhCCCcceEeece
Q 019890 207 -PN-----MLIEAL--------VAKSGLN-VFAHNIET-VEELQSAVRD--HRANFKQSLDVLMMAKDYVPAGTLTKTSI 268 (334)
Q Consensus 207 -P~-----i~vE~L--------l~~ag~d-v~~HnlET-v~~l~~~Vr~--r~~tye~sL~vL~~ak~~~p~Gl~tkTgi 268 (334)
.+ ++|... +.+.... .++--+.. ...++.++-| +++..+..++.++...+....-+.+.--+
T Consensus 183 ~~~~~~r~itvST~G~~~~i~~l~~~~~~~~LaiSLhA~~~e~R~~l~Pi~~~~~le~ll~al~~~~~~~~r~v~ieyvL 262 (342)
T PRK14465 183 AFNLGAKRITISTSGVVNGIRRFIENKEPYNFAISLNHPDPNGRLQIMDIEEKFPLEELLQAAKDFTRELKRRITFEYVM 262 (342)
T ss_pred hhcCCCCeEEEeCCCchHHHHHHHhhccCceEEEEecCCChhhcceEeeccccCCHHHHHHHHHHHHHHcCCEEEEEEEE
Confidence 11 122111 2111111 11111222 2455555432 46888999998886654432213334455
Q ss_pred EEecCCCHHHHHHHHHHHHHcCCcEEeeccCcCCCCCCCcccccCCHHHHHHHHHHHHH
Q 019890 269 MLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMPVSEYITPEAFERYRALGME 327 (334)
Q Consensus 269 MVGlGETdEE~~etl~~Lre~gvd~vtigqYlrP~~~h~~v~~yv~P~~f~~~~~~a~~ 327 (334)
|=|+--++||+.++.++++.+++ .+.+=+|-.+. .-.+-.++++.+.++++-.+
T Consensus 263 I~GvNDs~eda~~L~~ll~~l~~-kVnLIPyN~~~----~~~~~ps~e~i~~F~~~L~~ 316 (342)
T PRK14465 263 IPGVNMGRENANKLVKIARSLDC-KINVIPLNTEF----FGWRRPTDDEVAEFIMLLEP 316 (342)
T ss_pred ECCccCCHHHHHHHHHHHhhCCC-cEEEEccCCCC----CCCCCCCHHHHHHHHHHHHH
Confidence 56889999999999999999763 34444454421 11222345556666555433
No 142
>PF13353 Fer4_12: 4Fe-4S single cluster domain; PDB: 3C8F_A 3CB8_A 3T7V_A 2YX0_A 3CAN_A.
Probab=97.32 E-value=0.00058 Score=57.30 Aligned_cols=74 Identities=14% Similarity=0.307 Sum_probs=48.6
Q ss_pred eEEEEeecCCCCCCCCCcccCCCCCC---CCCCchhHHHHHHHHHHCCCcEEEEeeecCCCCCCc--hHHHHHHHHHHHH
Q 019890 129 TATIMILGDTCTRGCRFCNVKTSRAP---PPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQ--GSGHFAQTVRKLK 203 (334)
Q Consensus 129 Tatfm~igdgCtr~C~FC~V~~~r~p---~~ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~--Ga~~fa~lIr~Ik 203 (334)
.+..|. ..+|+.+|.||..+..... ..++.+.+.++.+.+...+...|+++|++ |-. ....+.++++.++
T Consensus 6 ~~~~~~-t~~Cnl~C~yC~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~i~l~GGE----Pll~~~~~~l~~i~~~~k 80 (139)
T PF13353_consen 6 IRVVLF-TNGCNLRCKYCFNSEIWKFKRGKELSEEIIEEIIEELKNYGIKGIVLTGGE----PLLHENYDELLEILKYIK 80 (139)
T ss_dssp CEEEEE-EC--SB--TT-TTCCCS-TT-SEEC-HHHHHHHCHHHCCCCCCEEEEECST----GGGHHSHHHHHHHHHHHH
T ss_pred EEEEEE-cCcccccCcCcCCcccCcccccccccchhhhhhhhHHhcCCceEEEEcCCC----eeeeccHhHHHHHHHHHH
Confidence 344443 7889999999987654321 23566777777888888999999999986 333 4678899999999
Q ss_pred hhCC
Q 019890 204 ELKP 207 (334)
Q Consensus 204 ~~~P 207 (334)
+..+
T Consensus 81 ~~~~ 84 (139)
T PF13353_consen 81 EKFP 84 (139)
T ss_dssp HTT-
T ss_pred HhCC
Confidence 8765
No 143
>COG1533 SplB DNA repair photolyase [DNA replication, recombination, and repair]
Probab=97.31 E-value=0.0049 Score=60.04 Aligned_cols=156 Identities=17% Similarity=0.300 Sum_probs=93.6
Q ss_pred ecCCCCCCCCCcccCCCCCC--C---CCCchh-HHHHHH-HHHHCCCc--EEEEeeecCCCC-CCchHHHHHHHHHHHHh
Q 019890 135 LGDTCTRGCRFCNVKTSRAP--P---PPDPDE-PTNVAE-AIASWGLD--YVVITSVDRDDL-ADQGSGHFAQTVRKLKE 204 (334)
Q Consensus 135 igdgCtr~C~FC~V~~~r~p--~---~ld~~E-p~~~A~-av~~~Glk--eVVLTSv~rdDl-~d~Ga~~fa~lIr~Ik~ 204 (334)
..-||+.+|.||=.....+. . .+..++ +.+.++ .+.+-|.+ .|.+-++ .|-+ |......+..-|.+|..
T Consensus 35 py~GC~h~C~YCYa~~~~~~~~~~~~~v~vk~n~~e~l~~el~~~~~k~~~i~is~~-TDpyqp~E~~~~ltR~ilei~~ 113 (297)
T COG1533 35 PYRGCSHGCIYCYARPMHGYLPKSPTKVNVKENLLELLERELRKPGPKRTVIAISSV-TDPYQPIEKEYRLTRKILEILL 113 (297)
T ss_pred CcCCCCCCCceeecccccccccCCCceeeechhHHHHHHHHHhhccCCceEEEEecC-CCCCCcchHHHHHHHHHHHHHH
Confidence 45699999999988743321 1 234444 444443 33333443 3444443 3322 22222223332333322
Q ss_pred hCCCCceeee----eccccccccc---cc--------hhhH-HHHHHhhcCCCCCHHHHHHHHHHHHHhCCCcceEeece
Q 019890 205 LKPNMLIEAL----VAKSGLNVFA---HN--------IETV-EELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSI 268 (334)
Q Consensus 205 ~~P~i~vE~L----l~~ag~dv~~---Hn--------lETv-~~l~~~Vr~r~~tye~sL~vL~~ak~~~p~Gl~tkTgi 268 (334)
.. +..+.+. +..-.+|.+. ++ +-|- +++-+.+-|+..+-+.+++.|+.+.+. | +.+++
T Consensus 114 ~~-~~~v~I~TKS~lv~RDld~l~~~~~~~~v~V~~Sitt~d~~l~k~~EP~apsp~~Ri~al~~l~ea---G--i~~~v 187 (297)
T COG1533 114 KY-GFPVSIVTKSALVLRDLDLLLELAERGKVRVAVSITTLDEELAKILEPRAPSPEERLEALKELSEA---G--IPVGL 187 (297)
T ss_pred Hc-CCcEEEEECCcchhhhHHHHHhhhhccceEEEEEeecCcHHHHHhcCCCCcCHHHHHHHHHHHHHC---C--CeEEE
Confidence 22 2334443 2222344433 33 2332 347777776667899999999999995 6 67888
Q ss_pred EEec---CCCHHHHHHHHHHHHHcCCcEEeec
Q 019890 269 MLGC---GETPDQVVSTMEKVRAAGVDVMTFG 297 (334)
Q Consensus 269 MVGl---GETdEE~~etl~~Lre~gvd~vtig 297 (334)
+|+= |.+|+|+.+.+..+.+.|+..+..+
T Consensus 188 ~v~PIiP~~~d~e~e~~l~~~~~ag~~~v~~~ 219 (297)
T COG1533 188 FVAPIIPGLNDEELERILEAAAEAGARVVVYG 219 (297)
T ss_pred EEecccCCCChHHHHHHHHHHHHcCCCeeEee
Confidence 8884 9999999999999999999988776
No 144
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=97.23 E-value=0.025 Score=52.51 Aligned_cols=164 Identities=7% Similarity=0.044 Sum_probs=110.6
Q ss_pred CCCchhHHHHHHHHHHC---CCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhCCCCceeee---------ec--ccccc
Q 019890 156 PPDPDEPTNVAEAIASW---GLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEAL---------VA--KSGLN 221 (334)
Q Consensus 156 ~ld~~Ep~~~A~av~~~---GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~P~i~vE~L---------l~--~ag~d 221 (334)
..+++|+.+.++.-+.. +-.-|+++|+.- ---.+.+.++++++|+. ++.+-+- +. ...+|
T Consensus 18 ~~t~eel~~~~~~~~~f~~~sggGVt~SGGEP----llq~~fl~~l~~~~k~~--gi~~~leTnG~~~~~~~~~l~~~~D 91 (213)
T PRK10076 18 DITLDALEREVMKDDIFFRTSGGGVTLSGGEV----LMQAEFATRFLQRLRLW--GVSCAIETAGDAPASKLLPLAKLCD 91 (213)
T ss_pred ccCHHHHHHHHHhhhHhhcCCCCEEEEeCchH----HcCHHHHHHHHHHHHHc--CCCEEEECCCCCCHHHHHHHHHhcC
Confidence 47888888887653321 335688988863 22244567888888774 3332221 00 01223
Q ss_pred ccccchhhH-HHHHHhhcCCCCCHHHHHHHHHHHHHhCCCcceEeeceEEecCCCHHHHHHHHHHHHHcCCcEEeeccCc
Q 019890 222 VFAHNIETV-EELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYM 300 (334)
Q Consensus 222 v~~HnlETv-~~l~~~Vr~r~~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGlGETdEE~~etl~~Lre~gvd~vtigqYl 300 (334)
.+..-+... +..|+.+. +.+.+..++.|+.+.+.... +.+++-+|=|+--++|++.+..++|++++++.+++-+|-
T Consensus 92 ~~l~DiK~~d~~~~~~~t--G~~~~~il~nl~~l~~~g~~-v~iR~~vIPg~nd~~e~i~~ia~~l~~l~~~~~~llpyh 168 (213)
T PRK10076 92 EVLFDLKIMDATQARDVV--KMNLPRVLENLRLLVSEGVN-VIPRLPLIPGFTLSRENMQQALDVLIPLGIKQIHLLPFH 168 (213)
T ss_pred EEEEeeccCCHHHHHHHH--CCCHHHHHHHHHHHHhCCCc-EEEEEEEECCCCCCHHHHHHHHHHHHHcCCceEEEecCC
Confidence 333323322 67888887 57889999999999987555 788999999999999999999999999999999888886
Q ss_pred CCCC---------CCCcccccCCHHHHHHHHHHHHHh
Q 019890 301 RPSK---------RHMPVSEYITPEAFERYRALGMEM 328 (334)
Q Consensus 301 rP~~---------~h~~v~~yv~P~~f~~~~~~a~~~ 328 (334)
+=+. -.+.-....+++..+.+++++++.
T Consensus 169 ~~g~~Ky~~lg~~y~~~~~~~~~~~~l~~~~~~~~~~ 205 (213)
T PRK10076 169 QYGEPKYRLLGKTWSMKEVPAPSSADVATMREMAERA 205 (213)
T ss_pred ccchhHHHHcCCcCccCCCCCcCHHHHHHHHHHHHHc
Confidence 4221 112223345777788888888764
No 145
>PF13394 Fer4_14: 4Fe-4S single cluster domain; PDB: 1TV8_B 1TV7_A 2FB2_A 2FB3_A.
Probab=97.17 E-value=0.00042 Score=56.96 Aligned_cols=77 Identities=21% Similarity=0.329 Sum_probs=41.5
Q ss_pred ecCCCCCCCCCcccCCCCC---CCCCCchhHHHHHHHHHHCCC--cEEEEeeecCCCCCCchHHHHHHHHHHHHhhCCCC
Q 019890 135 LGDTCTRGCRFCNVKTSRA---PPPPDPDEPTNVAEAIASWGL--DYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNM 209 (334)
Q Consensus 135 igdgCtr~C~FC~V~~~r~---p~~ld~~Ep~~~A~av~~~Gl--keVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~P~i 209 (334)
+.++|+.+|.||....... ....+.+++.+.++.++..+. ..|++||+.. +-......+.++++.+++..|+.
T Consensus 4 ~t~~Cnl~C~~C~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~v~~~GGEP--ll~~~~~~l~~~i~~~~~~~~~~ 81 (119)
T PF13394_consen 4 RTSGCNLRCSYCYNKSSWSPKKGEEMSIEELEEIIDELKEKGFRPSTVVFTGGEP--LLYLNPEDLIELIEYLKERGPEI 81 (119)
T ss_dssp --S--S---TTTS-TTTSST-GGGS--HHHHHHHHHHHHHTT----EEEEESSSG--GGSTTHHHHHHHHCTSTT-----
T ss_pred ccCCcCCCCccCCcCccCCCccCCcccHhHHHHHHHHHHhcCCceEEEEEECCCC--ccccCHHHHHHHHHHHHhhCCCc
Confidence 4689999999999754221 234677888888888888877 5799999862 20123457888888888876655
Q ss_pred ceee
Q 019890 210 LIEA 213 (334)
Q Consensus 210 ~vE~ 213 (334)
.+.+
T Consensus 82 ~i~i 85 (119)
T PF13394_consen 82 KIRI 85 (119)
T ss_dssp EEEE
T ss_pred eEEE
Confidence 4443
No 146
>COG0641 AslB Arylsulfatase regulator (Fe-S oxidoreductase) [General function prediction only]
Probab=97.06 E-value=0.021 Score=57.42 Aligned_cols=180 Identities=12% Similarity=0.145 Sum_probs=112.0
Q ss_pred CCCCCCCcccCCCCCCC-CCCchhHHHHHHHHHHC-CCcE--EEEeeecCCCCCCchHHHHHHHHHHHHhhC-CCCcee-
Q 019890 139 CTRGCRFCNVKTSRAPP-PPDPDEPTNVAEAIASW-GLDY--VVITSVDRDDLADQGSGHFAQTVRKLKELK-PNMLIE- 212 (334)
Q Consensus 139 Ctr~C~FC~V~~~r~p~-~ld~~Ep~~~A~av~~~-Glke--VVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~-P~i~vE- 212 (334)
|+-+|.||-.+-..... .++.+.+++..+.+.+. +.+. |+..|+.. --....|-+.+..+.++. .+..+.
T Consensus 18 CNL~C~YC~~~~~~~~~~~Ms~etle~~i~~~~~~~~~~~v~~~w~GGEP----lL~~~~f~~~~~~l~~k~~~~~~i~~ 93 (378)
T COG0641 18 CNLDCKYCFYLEKESLQRIMSDETLEEYVRQYIAASNGDKVTFTWQGGEP----LLAGLDFYRKAVALQQKYANGKTISN 93 (378)
T ss_pred cCCCCCeeCcccCCCCCCCCCHHHHHHHHHHHHhhCCCCeeEEEEECCcc----ccchHHHHHHHHHHHHHHhcCCeeEE
Confidence 99999999888543222 37888888888877665 5566 56667652 212233444444443332 243332
Q ss_pred -ee-------------eccccccccccchhhHHHHHHhhcC---CCCCHHHHHHHHHHHHHhCCCcceEeeceEEec-CC
Q 019890 213 -AL-------------VAKSGLNVFAHNIETVEELQSAVRD---HRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC-GE 274 (334)
Q Consensus 213 -~L-------------l~~ag~dv~~HnlETv~~l~~~Vr~---r~~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGl-GE 274 (334)
+. +++.+. .+..-++-.+.++.+.|+ -+.+|++-++-|+.+++. ++...+-+. + =+
T Consensus 94 siqTNg~LL~~e~~e~l~~~~~-~IgISiDGp~eihD~~R~~~~GkgTfd~i~~~i~~L~~~---~v~~~~~~v--v~~~ 167 (378)
T COG0641 94 ALQTNGTLLNDEWAEFLAEHDF-LIGISIDGPEEIHDKYRVTKSGKGTFDRVMKGLELLQAH---GVDFNTLTV--VNRQ 167 (378)
T ss_pred EEEEcccccCHHHHHHHHhcCc-eEEEeccCchHhccccccCCCCCccHHHHHHHHHHHHHc---CCcEEEEEE--Echh
Confidence 11 444444 444446666777766662 367899999999999985 343333322 6 78
Q ss_pred CHHHHHHHHHHHHHcCCcEEeeccCcCCCCCC-CcccccCCHHHHHHHHHHHHHh
Q 019890 275 TPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRH-MPVSEYITPEAFERYRALGMEM 328 (334)
Q Consensus 275 TdEE~~etl~~Lre~gvd~vtigqYlrP~~~h-~~v~~yv~P~~f~~~~~~a~~~ 328 (334)
..+++.+.+++|.+.|...+-+-+-+.+...- --..+.++|++|..|-+.-.++
T Consensus 168 n~~~~~ei~~~l~~~g~~~i~fip~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~ 222 (378)
T COG0641 168 NVLHPEEIYHFLKSEGSKFIQFIPLVESDNRGDSLLEFSVTAEEYGQFLIAIFDE 222 (378)
T ss_pred HhhCHHHHHHHHHHcccceEEEEecccCCCCCccccccccCHHHHHHHHHHHHHH
Confidence 88889999999999996666663223222222 1235678999888776655544
No 147
>COG1509 KamA Lysine 2,3-aminomutase [Amino acid transport and metabolism]
Probab=97.00 E-value=0.025 Score=56.39 Aligned_cols=157 Identities=18% Similarity=0.341 Sum_probs=99.5
Q ss_pred eEEEEeecCCCCCCCCCcccCCCCCC--CCCCchhHHHHHHHHHHC-CCcEEEEeeecCCCCCCchHHHHHHHHHHHHhh
Q 019890 129 TATIMILGDTCTRGCRFCNVKTSRAP--PPPDPDEPTNVAEAIASW-GLDYVVITSVDRDDLADQGSGHFAQTVRKLKEL 205 (334)
Q Consensus 129 Tatfm~igdgCtr~C~FC~V~~~r~p--~~ld~~Ep~~~A~av~~~-GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~ 205 (334)
.+..|+..++|.-.|+||-=+..-+. ..+..++.......+++- -+++|+|||+|---++| ..+..++++|++.
T Consensus 111 drvLll~t~~C~vyCRyCfRr~~~~~~~~~~~~~~~~~al~YIa~hPeI~eVllSGGDPL~ls~---~~L~~ll~~L~~I 187 (369)
T COG1509 111 DRVLLLVTGVCAVYCRYCFRRRFVGQDNQGFNKEEWDKALDYIAAHPEIREVLLSGGDPLSLSD---KKLEWLLKRLRAI 187 (369)
T ss_pred CeEEEEecCcccceeeecccccccccccccCCHHHHHHHHHHHHcCchhheEEecCCCccccCH---HHHHHHHHHHhcC
Confidence 56788899999999999943321111 125777888777777775 58999999998644554 4578888888775
Q ss_pred CCCCceeee---------------------eccccccc-----cccchhhHHHHHHhhcCCCCCHHHHHHHHHHHHHhCC
Q 019890 206 KPNMLIEAL---------------------VAKSGLNV-----FAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVP 259 (334)
Q Consensus 206 ~P~i~vE~L---------------------l~~ag~dv-----~~HnlETv~~l~~~Vr~r~~tye~sL~vL~~ak~~~p 259 (334)
|. |+++ +.++...+ +||- .++.+. ..+.+++++..
T Consensus 188 -pH--v~iiRi~TR~pvv~P~RIt~~L~~~l~~~~~~v~~~tH~NHp----~Eit~e----------~~~A~~~L~~a-- 248 (369)
T COG1509 188 -PH--VKIIRIGTRLPVVLPQRITDELCEILGKSRKPVWLVTHFNHP----NEITPE----------AREACAKLRDA-- 248 (369)
T ss_pred -Cc--eeEEEeecccceechhhccHHHHHHHhccCceEEEEcccCCh----hhcCHH----------HHHHHHHHHHc--
Confidence 43 3333 22222222 3332 222222 22444455554
Q ss_pred CcceE--eeceEEecCCCHHHHHHHHHHHHHcCCcEEeeccC-cCCCCCCCc
Q 019890 260 AGTLT--KTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQY-MRPSKRHMP 308 (334)
Q Consensus 260 ~Gl~t--kTgiMVGlGETdEE~~etl~~Lre~gvd~vtigqY-lrP~~~h~~ 308 (334)
|+.+ -|=++=|...+.|=+.++++.|-.+||-=-.++|- +-++..|+-
T Consensus 249 -Gv~l~NQsVLLrGVND~~evl~~L~~~L~~~gV~PYYl~~~D~~~G~~hfr 299 (369)
T COG1509 249 -GVPLLNQSVLLRGVNDDPEVLKELSRALFDAGVKPYYLHQLDLVQGAAHFR 299 (369)
T ss_pred -CceeecchheecccCCCHHHHHHHHHHHHHcCCcceEEeccCccCCcccee
Confidence 6655 45677799999999999999999999764444322 234455543
No 148
>COG1243 ELP3 Histone acetyltransferase [Transcription / Chromatin structure and dynamics]
Probab=96.92 E-value=0.026 Score=57.92 Aligned_cols=186 Identities=16% Similarity=0.290 Sum_probs=123.9
Q ss_pred hHHHHHHHhhcCchhhhhccCCCCCcccccCCCCCcceEEEEeecCCCCC-CCCCcccCC------CCC---CCC-----
Q 019890 92 YVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTR-GCRFCNVKT------SRA---PPP----- 156 (334)
Q Consensus 92 ~~~~~~~l~~~~L~Tvceea~cpni~ec~~~~~~~~~Tatfm~igdgCtr-~C~FC~V~~------~r~---p~~----- 156 (334)
..+++.+|++.-..|. + |-+..+.|.==.+|+. .|-||...- +-. |..
T Consensus 47 ~~~l~~~lr~KPvRt~-------------s----gvaVVaVmt~p~~CPHg~CvfCpgg~~~~spQSytg~ep~~~R~~~ 109 (515)
T COG1243 47 EERLREILRRKPVRTI-------------S----GVAVVAVMTSPHGCPHGRCVFCPGGPDKDSPQSYTGEEPAALRAIK 109 (515)
T ss_pred HHHHHHHHhhcCcccc-------------c----cceEEEEecCCCCCCCCeEEeCCCCCCCCCCcccCCCCchhhhHhh
Confidence 3448888887766665 1 2345666766779997 999998762 111 111
Q ss_pred --CCc-hhHHHHHHHHHHCCC---c-EEEEeeecCCCCC-CchHHHHHHHHHHHH----------hhC-------CCCce
Q 019890 157 --PDP-DEPTNVAEAIASWGL---D-YVVITSVDRDDLA-DQGSGHFAQTVRKLK----------ELK-------PNMLI 211 (334)
Q Consensus 157 --ld~-~Ep~~~A~av~~~Gl---k-eVVLTSv~rdDl~-d~Ga~~fa~lIr~Ik----------~~~-------P~i~v 211 (334)
.|| .+.....+.+...|- + ++++-|++---++ ++--+.+..+.+++. ..+ -++++
T Consensus 110 ~~ydpY~q~~~Rl~qL~~igh~~~KvEliimGGTFta~~~~yqe~Fi~~~~~amn~f~~~le~a~~~ne~~~~r~vgiti 189 (515)
T COG1243 110 NRYDPYEQVRARLKQLETIGHTSDKVELIIMGGTFTALSLEYQEWFLKVALKAMNDFGYDLEEAQRKNETAELRCVGITI 189 (515)
T ss_pred ccCCcHHHHHHHHHHHHHcCCCcceEEEEEecccccCCCHHHHHHHHHHHHHhhhccchhHHHHHHhhcccccceeEEEE
Confidence 112 244455566777774 3 6777787632222 222233344444443 111 11233
Q ss_pred eee-----------eccccccccccchhhH-HHHHHhhcCCCCCHHHHHHHHHHHHHhCCCcceEeeceEEec-CCCHHH
Q 019890 212 EAL-----------VAKSGLNVFAHNIETV-EELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC-GETPDQ 278 (334)
Q Consensus 212 E~L-----------l~~ag~dv~~HnlETv-~~l~~~Vr~r~~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGl-GETdEE 278 (334)
|.- +..-|.+.+--.++++ +.+++++. |+|++++..+.-+-+|+. |+.+...+|.|| |-..|-
T Consensus 190 ETRPD~~~ee~ld~mlkyG~TrVELGVQSiyd~Vl~~~~-RGHtvedv~~a~rLlKd~---GfKv~~HiMpGLPgs~~er 265 (515)
T COG1243 190 ETRPDYIDEEHLDQMLKYGVTRVELGVQSIYDDVLERTK-RGHTVEDVVEATRLLKDA---GFKVGYHIMPGLPGSDFER 265 (515)
T ss_pred ecCccccCHHHHHHHHhcCCcEEEEeeeeHHHHHHHHhc-CCccHHHHHHHHHHHHhc---CcEEEEEecCCCCCCChHH
Confidence 321 6666777777777876 88999999 999999999999999996 899999999999 998888
Q ss_pred HHHHHHHHHHcC---CcEEeecc
Q 019890 279 VVSTMEKVRAAG---VDVMTFGQ 298 (334)
Q Consensus 279 ~~etl~~Lre~g---vd~vtigq 298 (334)
=+++++.+-+.+ .|++-|.+
T Consensus 266 Dl~~f~~~f~~p~f~PDmlKIYP 288 (515)
T COG1243 266 DLESFREIFEDPRFRPDMLKIYP 288 (515)
T ss_pred HHHHHHHHHhCCCCCCCeEEEee
Confidence 888888888888 99999974
No 149
>COG1313 PflX Uncharacterized Fe-S protein PflX, homolog of pyruvate formate lyase activating proteins [General function prediction only]
Probab=96.90 E-value=0.0081 Score=58.48 Aligned_cols=182 Identities=19% Similarity=0.261 Sum_probs=105.2
Q ss_pred CCCCCCCCCccc---CCCCCCCCCCchhHHHHHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhCCC-----
Q 019890 137 DTCTRGCRFCNV---KTSRAPPPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPN----- 208 (334)
Q Consensus 137 dgCtr~C~FC~V---~~~r~p~~ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~P~----- 208 (334)
.||+-+|-||.= +.-......++++..++....++.|.+-|-+.|++. .--...+.++++.+....|-
T Consensus 126 sgCnfrCVfCQNwdISq~~~g~~v~~e~La~i~~~~~~~GakNvN~Vgg~P----tp~lp~Ile~l~~~~~~iPvvwNSn 201 (335)
T COG1313 126 SGCNFRCVFCQNWDISQFGIGKEVTPEDLAEIILELRRHGAKNVNFVGGDP----TPHLPFILEALRYASENIPVVWNSN 201 (335)
T ss_pred cCcceEEEEecCccccccCCCeEecHHHHHHHHHHHHHhcCcceeecCCCC----CCchHHHHHHHHHHhcCCCEEEecC
Confidence 499999999952 222112357889999999999999999999999873 22223344444444433331
Q ss_pred --Cceeee-ecccccccccc-----chhhHHHHHHhhcCCCCCH-HHHHHHHHHHHHhCCCcceEeeceEEecCCC-HHH
Q 019890 209 --MLIEAL-VAKSGLNVFAH-----NIETVEELQSAVRDHRANF-KQSLDVLMMAKDYVPAGTLTKTSIMLGCGET-PDQ 278 (334)
Q Consensus 209 --i~vE~L-l~~ag~dv~~H-----nlETv~~l~~~Vr~r~~ty-e~sL~vL~~ak~~~p~Gl~tkTgiMVGlGET-dEE 278 (334)
.+.|.+ +.+--+|+|-- |-|-..++ ..+ .+| +--.+-+..+++... |+.++-=+|=|+=|. -..
T Consensus 202 mY~s~E~l~lL~gvVDiyL~DfKYgNdeca~ky-Skv----p~Y~eVv~rn~~~~~~~~g-~~iiRHLVlPghlecCTkp 275 (335)
T COG1313 202 MYMSEETLKLLDGVVDIYLPDFKYGNDECAEKY-SKV----PNYWEVVTRNILEAKEQVG-GLIIRHLVLPGHLECCTKP 275 (335)
T ss_pred CccCHHHHHHhhccceeeecccccCCHHHHHHh-hcC----CchHHHHHHHHHHHHHhcC-ceEEEEEecCCchhhccHH
Confidence 133333 33333444321 22222332 222 222 222344444555433 488888888888665 555
Q ss_pred HHHHHHHHHHcCCcEEeeccCcCCCCCCC---cccccCCHHHHHHHHHHHHHhh
Q 019890 279 VVSTMEKVRAAGVDVMTFGQYMRPSKRHM---PVSEYITPEAFERYRALGMEMV 329 (334)
Q Consensus 279 ~~etl~~Lre~gvd~vtigqYlrP~~~h~---~v~~yv~P~~f~~~~~~a~~~~ 329 (334)
+.+-+...---.+-.--++||- |.-+.. .+.|.++.++.++-.++|+++|
T Consensus 276 I~~wiae~~g~~~~vNiM~QY~-P~ykA~eypeI~R~lt~eE~e~a~~~a~~~g 328 (335)
T COG1313 276 ILRWIAENLGNDVRVNIMFQYR-PEYKAEEYPEINRRLTREEYEKALEYAEKLG 328 (335)
T ss_pred HHHHHHHhCCCCeeEEehhhcc-chhhhhhchhhcccCCHHHHHHHHHHHHHcC
Confidence 5544443332233333456774 554333 4578899999999999999875
No 150
>TIGR02491 NrdG anaerobic ribonucleoside-triphosphate reductase activating protein. This enzyme is a member of the radical-SAM family (pfam04055) and utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin ) to produce a glycine-centered radical in the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487). The two components form an alpha-2/beta-2 heterodimer.
Probab=96.81 E-value=0.01 Score=52.01 Aligned_cols=67 Identities=15% Similarity=0.214 Sum_probs=49.6
Q ss_pred CCCCCCCCCcccCCCC---CCCCCCchhHHHHHHHHHHCC-CcEEEEeeecCCCCCCchHHHHHHHHHHHHhh
Q 019890 137 DTCTRGCRFCNVKTSR---APPPPDPDEPTNVAEAIASWG-LDYVVITSVDRDDLADQGSGHFAQTVRKLKEL 205 (334)
Q Consensus 137 dgCtr~C~FC~V~~~r---~p~~ld~~Ep~~~A~av~~~G-lkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~ 205 (334)
.+|+.+|.||.-+... ....++.+++.++.+.+.+.+ +..|+++|+.- +-......+.++++.+++.
T Consensus 23 ~gCnl~C~~C~n~~~~~~~~g~~~~~~~~~~i~~~l~~~~~~~gVt~sGGEP--llq~~~~~l~~ll~~~k~~ 93 (154)
T TIGR02491 23 AGCKHHCEGCFNKETWNFNGGKEFTEALEKEIIRDLNDNPLIDGLTLSGGDP--LYPRNVEELIELVKKIKAE 93 (154)
T ss_pred CCCCCCCcCCCcccccCCCCCCcCCHHHHHHHHHHHHhcCCcCeEEEeChhh--CCCCCHHHHHHHHHHHHHh
Confidence 5899999999877532 123578788888888888776 67899999974 2222346788889888875
No 151
>PRK11121 nrdG anaerobic ribonucleotide reductase-activating protein; Provisional
Probab=96.77 E-value=0.0093 Score=52.41 Aligned_cols=73 Identities=16% Similarity=0.241 Sum_probs=48.2
Q ss_pred CCCCCCCCCcccCCCCC---CCCCCchhHHHHHHHHHHCCC--cEEEEeeecCCCCCCchHHHHHHHHHHHHhhCCCCce
Q 019890 137 DTCTRGCRFCNVKTSRA---PPPPDPDEPTNVAEAIASWGL--DYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLI 211 (334)
Q Consensus 137 dgCtr~C~FC~V~~~r~---p~~ld~~Ep~~~A~av~~~Gl--keVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~P~i~v 211 (334)
.||+.+|.||--+..-. ....+.+...++.+.+...+. ..|+++|+.. +-......+.++++++++..|+..|
T Consensus 24 ~GCnl~C~~C~n~~~~~~~~g~~~~~~~~~~il~~~~~~~~~~~gvt~sGGEP--l~~~~~~~l~~l~~~~k~~~~~~~i 101 (154)
T PRK11121 24 SGCVHQCPGCYNKSTWRLNSGHPFTKEMEDQIIADLNDTRIKRQGLSLSGGDP--LHPQNVPDILKLVQRVKAECPGKDI 101 (154)
T ss_pred CCCCCcCcCCCChhhccCCCCcccCHHHHHHHHHHHHHhCCCCCcEEEECCCc--cchhhHHHHHHHHHHHHHHCCCCCE
Confidence 89999999997664211 112454555566666666655 6799999974 2222446778888988887766444
No 152
>PRK14461 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=96.71 E-value=0.088 Score=52.96 Aligned_cols=151 Identities=14% Similarity=0.186 Sum_probs=92.0
Q ss_pred EEEeecCCCCCCCCCcccCCCCCCCCCCchhHHHHHHHHHHC-----------------CCcEEEEeeecCCCCCCchHH
Q 019890 131 TIMILGDTCTRGCRFCNVKTSRAPPPPDPDEPTNVAEAIASW-----------------GLDYVVITSVDRDDLADQGSG 193 (334)
Q Consensus 131 tfm~igdgCtr~C~FC~V~~~r~p~~ld~~Ep~~~A~av~~~-----------------GlkeVVLTSv~rdDl~d~Ga~ 193 (334)
.-+.-|-||..+|+||+-....-...|.+.||..++..+.+. .++.||+-|..- | ..
T Consensus 109 lCvSSQvGC~mgC~FCaTG~~G~~RNLt~~EIv~Qv~~~~~~l~~~~~~~~~~~~~~~~~i~NIVfMGMGE---P---L~ 182 (371)
T PRK14461 109 VCVSTQAGCGMGCVFCATGTLGLLRNLSSGEIVAQVIWASRELRAMGAAISKRHAGPVGRVTNLVFMGMGE---P---FA 182 (371)
T ss_pred EEEEccCCccCCCCcccCCCCCcccCCCHHHHHHHHHHHHHHhhhcccccccccccccCceeeEEEEccCC---c---hh
Confidence 344457899999999975543213468999999988776532 267888877531 1 34
Q ss_pred HHHHHHHHHHhhC-CC--------Cceeee--------eccccccc-cccch-----hhHHHHHHhhcCCCCCHHHHHHH
Q 019890 194 HFAQTVRKLKELK-PN--------MLIEAL--------VAKSGLNV-FAHNI-----ETVEELQSAVRDHRANFKQSLDV 250 (334)
Q Consensus 194 ~fa~lIr~Ik~~~-P~--------i~vE~L--------l~~ag~dv-~~Hnl-----ETv~~l~~~Vr~r~~tye~sL~v 250 (334)
.+..++++|+-.. |. ++|... +.+.++.+ ++.-+ |+=..++|. . +++..++-++.
T Consensus 183 NydnV~~ai~il~d~~g~~is~R~ITVST~Givp~I~~la~~~~~v~LAiSLHA~~~e~R~~lmPi-n-~~ypl~eLl~a 260 (371)
T PRK14461 183 NYDRWWQAVERLHDPQGFNLGARSMTVSTVGLVKGIRRLANERLPINLAISLHAPDDALRSELMPV-N-RRYPIADLMAA 260 (371)
T ss_pred hHHHHHHHHHHhcCccccCcCCCceEEEeecchhHHHHHHhcccCceEEEEeCCCCHHHHHHhcCc-c-cCCCHHHHHHH
Confidence 5666777666543 21 222222 33333322 11111 222344443 2 47888888888
Q ss_pred HHHHHHhCCCcceEeeceEEecCCCHHHHHHHHHHHHHc
Q 019890 251 LMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAA 289 (334)
Q Consensus 251 L~~ak~~~p~Gl~tkTgiMVGlGETdEE~~etl~~Lre~ 289 (334)
++..-+.-..-+.+-=-+|=|+--+.||..++.+.|+.+
T Consensus 261 ~~~y~~~t~rrit~EYvLi~gvNDs~e~A~~L~~llk~~ 299 (371)
T PRK14461 261 TRDYIAKTRRRVSFEYVLLQGKNDHPEQAAALARLLRGE 299 (371)
T ss_pred HHHHHHhhCCEEEEEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 887765433313333445557799999999999999987
No 153
>COG1244 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=96.68 E-value=0.04 Score=54.40 Aligned_cols=161 Identities=19% Similarity=0.384 Sum_probs=102.3
Q ss_pred eEEEEeecCCCC----CCCCCcccCCCCCCCCCCchhHHHHHHHH-HHCC--CcE--E-EEeeecC---CCCCCchHHHH
Q 019890 129 TATIMILGDTCT----RGCRFCNVKTSRAPPPPDPDEPTNVAEAI-ASWG--LDY--V-VITSVDR---DDLADQGSGHF 195 (334)
Q Consensus 129 Tatfm~igdgCt----r~C~FC~V~~~r~p~~ld~~Ep~~~A~av-~~~G--lke--V-VLTSv~r---dDl~d~Ga~~f 195 (334)
+-+++.=+-||. -+|.+|+.+....+.+++.+++.++...+ .+.. ..+ | +.||+-- ...|+.-..
T Consensus 47 ~l~vILrT~GC~w~~~~gC~MCgY~~d~~~~~vs~E~l~~qfd~~~~k~~~~~~~~~vkIFTSGSFLD~~EVP~e~R~-- 124 (358)
T COG1244 47 SLTVILRTRGCRWYREGGCYMCGYPADSAGEPVSEENLINQFDEAYSKYEGKFDEFVVKIFTSGSFLDPEEVPREARR-- 124 (358)
T ss_pred eEEEEEecCCcceeccCCcceeccccccCCCCCCHHHHHHHHHHHHHHhcccCCCceEEEEcccccCChhhCCHHHHH--
Confidence 555555567776 34899999876435678888888777644 3332 233 3 4588763 123333223
Q ss_pred HHHHHHHHhhC----------CC-Cceeee--ec---cccccccccchhhH-HHHH-HhhcCCCCCHHHHHHHHHHHHHh
Q 019890 196 AQTVRKLKELK----------PN-MLIEAL--VA---KSGLNVFAHNIETV-EELQ-SAVRDHRANFKQSLDVLMMAKDY 257 (334)
Q Consensus 196 a~lIr~Ik~~~----------P~-i~vE~L--l~---~ag~dv~~HnlETv-~~l~-~~Vr~r~~tye~sL~vL~~ak~~ 257 (334)
.+++.|.+.. |+ +..|.+ +. +-..--++..+||+ +.+- ..|+ .+.+++++++-.+.+|+.
T Consensus 125 -~Il~~is~~~~v~~vvvESRpE~I~eE~l~e~~~il~gk~~EvaIGLETanD~ire~sIN-KGftF~df~~A~~~ir~~ 202 (358)
T COG1244 125 -YILERISENDNVKEVVVESRPEFIREERLEEITEILEGKIVEVAIGLETANDKIREDSIN-KGFTFEDFVRAAEIIRNY 202 (358)
T ss_pred -HHHHHHhhccceeEEEeecCchhcCHHHHHHHHHhhCCceEEEEEecccCcHHHHHHhhh-cCCcHHHHHHHHHHHHHc
Confidence 3444444321 22 222222 11 11111256668886 5554 5688 589999999999999986
Q ss_pred CCCcceEeeceEEec-----CCCHHHHHHHHHHHHHcCCcEEeec
Q 019890 258 VPAGTLTKTSIMLGC-----GETPDQVVSTMEKVRAAGVDVMTFG 297 (334)
Q Consensus 258 ~p~Gl~tkTgiMVGl-----GETdEE~~etl~~Lre~gvd~vtig 297 (334)
|+.++|.+|+=. .|.-+|++.++. ..+-++|.+.|+
T Consensus 203 ---g~~vktYlllKP~FlSE~eAI~D~i~Si~-~~~~~~d~iSin 243 (358)
T COG1244 203 ---GAKVKTYLLLKPPFLSEKEAIEDVISSIV-AAKPGTDTISIN 243 (358)
T ss_pred ---CCceeEEEEecccccChHHHHHHHHHHHH-HhccCCCeEEec
Confidence 789999999875 566678888888 666789999998
No 154
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=96.48 E-value=0.071 Score=51.57 Aligned_cols=134 Identities=19% Similarity=0.264 Sum_probs=92.4
Q ss_pred CCCCchhHHHHHHHHHHCCCcEEEEeeecCCC-CCCchHHHHHHHHHHHHhhCCCCceeee---------eccccccccc
Q 019890 155 PPPDPDEPTNVAEAIASWGLDYVVITSVDRDD-LADQGSGHFAQTVRKLKELKPNMLIEAL---------VAKSGLNVFA 224 (334)
Q Consensus 155 ~~ld~~Ep~~~A~av~~~GlkeVVLTSv~rdD-l~d~Ga~~fa~lIr~Ik~~~P~i~vE~L---------l~~ag~dv~~ 224 (334)
...+.++-.++|+.+.+.|+++|=++|-.... .|... .-.+.++.|.+ .++..+-.+ ..++|++.+.
T Consensus 21 ~~~s~e~k~~ia~~L~~~Gv~~IEvgsf~~p~~~p~~~--d~~e~~~~l~~-~~~~~~~~l~~~~~~ie~A~~~g~~~v~ 97 (287)
T PRK05692 21 RFIPTADKIALIDRLSAAGLSYIEVASFVSPKWVPQMA--DAAEVMAGIQR-RPGVTYAALTPNLKGLEAALAAGADEVA 97 (287)
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEeCCCcCcccccccc--cHHHHHHhhhc-cCCCeEEEEecCHHHHHHHHHcCCCEEE
Confidence 35789999999999999999999887543222 23222 12467777765 355544443 4567888777
Q ss_pred cchhhHHH-HHHhhcCCCCCHHHH----HHHHHHHHHhCCCcceEeeceEEecC---C---CHHHHHHHHHHHHHcCCcE
Q 019890 225 HNIETVEE-LQSAVRDHRANFKQS----LDVLMMAKDYVPAGTLTKTSIMLGCG---E---TPDQVVSTMEKVRAAGVDV 293 (334)
Q Consensus 225 HnlETv~~-l~~~Vr~r~~tye~s----L~vL~~ak~~~p~Gl~tkTgiMVGlG---E---TdEE~~etl~~Lre~gvd~ 293 (334)
..+-+++. ...+++ .+.++. .+.++.+|+. |+.+..+|+.-|| + +.+.+.+..+.+.++|+|.
T Consensus 98 i~~~~s~~~~~~n~~---~~~~e~l~~~~~~v~~ak~~---g~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~G~d~ 171 (287)
T PRK05692 98 VFASASEAFSQKNIN---CSIAESLERFEPVAEAAKQA---GVRVRGYVSCVLGCPYEGEVPPEAVADVAERLFALGCYE 171 (287)
T ss_pred EEEecCHHHHHHHhC---CCHHHHHHHHHHHHHHHHHc---CCEEEEEEEEEecCCCCCCCCHHHHHHHHHHHHHcCCcE
Confidence 66655544 333333 456664 4677777775 6888888887774 2 6789999999999999999
Q ss_pred Eeec
Q 019890 294 MTFG 297 (334)
Q Consensus 294 vtig 297 (334)
+.+-
T Consensus 172 i~l~ 175 (287)
T PRK05692 172 ISLG 175 (287)
T ss_pred EEec
Confidence 8764
No 155
>TIGR02826 RNR_activ_nrdG3 anaerobic ribonucleoside-triphosphate reductase activating protein. Members of this family represent a set of proteins related to, yet architecturally different from, the activating protein for the glycine radical-containing, oxygen-sensitive ribonucleoside-triphosphate reductase (RNR) as described in model TIGR02491. Members of this family are found paired with members of a similarly divergent set of anaerobic ribonucleoside-triphosphate reductases. Identification of this protein as an RNR activitating protein is partly from pairing with a candidate RNR. It is further supported by our finding that upstream of these operons are examples of a conserved regulatory element (described Rodionov and Gelfand) that is found in nearly all bacteria and that occurs specifically upstream of operons for all three classes of RNR genes.
Probab=96.42 E-value=0.012 Score=51.49 Aligned_cols=70 Identities=14% Similarity=0.207 Sum_probs=49.4
Q ss_pred eEEEEeecCCCCCCCCCcccCCCCC---CCCCCchhHHHHHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhh
Q 019890 129 TATIMILGDTCTRGCRFCNVKTSRA---PPPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKEL 205 (334)
Q Consensus 129 Tatfm~igdgCtr~C~FC~V~~~r~---p~~ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~ 205 (334)
..++++.-.||+.+|.||.-+..-. ...++.+++.+..+... ..+..|++||++ + -...+.++++.+++.
T Consensus 15 ~~~~~vfl~GCnlrC~~C~n~~~~~~~~g~~lt~eel~~~I~~~~-~~~~gVt~SGGE---l---~~~~l~~ll~~lk~~ 87 (147)
T TIGR02826 15 EYSLAFYITGCPLGCKGCHSPESWHLSEGTKLTPEYLTKTLDKYR-SLISCVLFLGGE---W---NREALLSLLKIFKEK 87 (147)
T ss_pred CEEEEEEeCCCCCCCCCCCChHHcCCCCCcCCCHHHHHHHHHHhC-CCCCEEEEechh---c---CHHHHHHHHHHHHHC
Confidence 3444555569999999998875421 23578888887776644 246789999997 2 235688899988875
No 156
>KOG2876 consensus Molybdenum cofactor biosynthesis pathway protein [Coenzyme transport and metabolism]
Probab=96.40 E-value=0.005 Score=59.24 Aligned_cols=181 Identities=18% Similarity=0.263 Sum_probs=116.9
Q ss_pred eEEEEe--ecCCCCCCCCCcccCCCCC--C--CCCCchhHHHHHHHHHHCCCcEEEEeeec---CCCCCCchH--HHHHH
Q 019890 129 TATIMI--LGDTCTRGCRFCNVKTSRA--P--PPPDPDEPTNVAEAIASWGLDYVVITSVD---RDDLADQGS--GHFAQ 197 (334)
Q Consensus 129 Tatfm~--igdgCtr~C~FC~V~~~r~--p--~~ld~~Ep~~~A~av~~~GlkeVVLTSv~---rdDl~d~Ga--~~fa~ 197 (334)
..||+. +.+.|+-+|.||.+..++. | ..+...||.+++..+...|+.-+-||++. |.|..+-++ ..|.+
T Consensus 9 ~htyLrislte~cnlrc~ycMpsegv~l~pk~~~lav~eilrl~~~F~~qgv~knrLtggeptIr~di~~i~~g~~~l~g 88 (323)
T KOG2876|consen 9 EHTYLRISLTEKCNLRCQYCMPSEGVPLKPKRKLLAVSEILRLAGLFAPQGVDKNRLTGGEPLIRQDIVPIVAGLSSLPG 88 (323)
T ss_pred hhhhhhhhhhhccccccceechhcCCcCccchhhcchhhhHHhhhhhhHhhhhhhhhcCCCCcccccccchhhhhhcccc
Confidence 345554 6789999999999999883 3 23678999999999999999999999986 222222121 12221
Q ss_pred HHHHHHhhCCC-Cce-eee--eccccccccccchhh-HHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCcceEeeceEEec
Q 019890 198 TVRKLKELKPN-MLI-EAL--VAKSGLNVFAHNIET-VEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC 272 (334)
Q Consensus 198 lIr~Ik~~~P~-i~v-E~L--l~~ag~dv~~HnlET-v~~l~~~Vr~r~~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGl 272 (334)
++.++- .++ +.. ..+ +.++|++-+|.-++| ++.-+..+- |+-.+..-+.-++.+.+.--+-..+..-+|=|+
T Consensus 89 -Lks~~I-Ttng~vl~R~lp~lhkaglssiNiSldtl~~aKfa~~~-rr~g~v~V~~~iq~a~~lgy~pvkvn~v~~k~~ 165 (323)
T KOG2876|consen 89 -LKSIGI-TTNGLVLARLLPQLHKAGLSSINISLDTLVRAKFAKLT-RRKGFVKVWASIQLAIELGYNPVKVNCVVMKGL 165 (323)
T ss_pred -hhhhce-eccchhhhhhhhHHHhhcccchhhhhhhhhHHHHHHHh-hhccHHHHHHHHhHHhhhCCCCcceeeEEEecc
Confidence 111211 111 100 111 788999999988887 477777766 688898888888888865322123444455555
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEeeccCcCCCCCCCcccccCCH
Q 019890 273 GETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMPVSEYITP 315 (334)
Q Consensus 273 GETdEE~~etl~~Lre~gvd~vtigqYlrP~~~h~~v~~yv~P 315 (334)
.+.|+.+....=+...+|+.+|- ||.=.........+|+=
T Consensus 166 --n~~ev~Dfv~~tr~~p~DVrfIe-~mpf~gn~~~t~~lIpy 205 (323)
T KOG2876|consen 166 --NEDEVFDFVLLTRMRPLDVRFIE-FMPFDGNKWNTKSLIPY 205 (323)
T ss_pred --CCCcccceeeecCCCCcceEEEE-ecccCCCcccccccccH
Confidence 33456666666677778888884 87555555555555544
No 157
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=96.20 E-value=0.16 Score=48.45 Aligned_cols=130 Identities=16% Similarity=0.208 Sum_probs=89.0
Q ss_pred CCCchhHHHHHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhCCCCceeee----------ecccccccccc
Q 019890 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEAL----------VAKSGLNVFAH 225 (334)
Q Consensus 156 ~ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~P~i~vE~L----------l~~ag~dv~~H 225 (334)
..+.++-.++++.+.+.|+++|=+.+-. .+ ...++.++.+.+......+-.. ..++|++.+..
T Consensus 18 ~~s~~~k~~i~~~L~~~Gv~~IEvG~P~------~~-~~~~~~~~~l~~~~~~~~v~~~~r~~~~di~~a~~~g~~~i~i 90 (262)
T cd07948 18 FFDTEDKIEIAKALDAFGVDYIELTSPA------AS-PQSRADCEAIAKLGLKAKILTHIRCHMDDARIAVETGVDGVDL 90 (262)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEECCC------CC-HHHHHHHHHHHhCCCCCcEEEEecCCHHHHHHHHHcCcCEEEE
Confidence 5789999999999999999999887632 12 2234555555443222222111 45667887666
Q ss_pred chhhHHHHHHhhcCCCCCHHH----HHHHHHHHHHhCCCcceEeeceEEecCCCHHHHHHHHHHHHHcCCcEEeec
Q 019890 226 NIETVEELQSAVRDHRANFKQ----SLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFG 297 (334)
Q Consensus 226 nlETv~~l~~~Vr~r~~tye~----sL~vL~~ak~~~p~Gl~tkTgiMVGlGETdEE~~etl~~Lre~gvd~vtig 297 (334)
.+-+++.....-. +.+.++ ..+.++.+|+. |+.+.-+++-.++=..+++.+.++.+.++|++.+.+-
T Consensus 91 ~~~~S~~~~~~~~--~~~~~e~~~~~~~~i~~a~~~---G~~v~~~~eda~r~~~~~l~~~~~~~~~~g~~~i~l~ 161 (262)
T cd07948 91 VFGTSPFLREASH--GKSITEIIESAVEVIEFVKSK---GIEVRFSSEDSFRSDLVDLLRVYRAVDKLGVNRVGIA 161 (262)
T ss_pred EEecCHHHHHHHh--CCCHHHHHHHHHHHHHHHHHC---CCeEEEEEEeeCCCCHHHHHHHHHHHHHcCCCEEEEC
Confidence 5544443333221 244555 44556888875 7999999999999889999999999999999988664
No 158
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=96.02 E-value=0.19 Score=47.38 Aligned_cols=146 Identities=16% Similarity=0.209 Sum_probs=95.4
Q ss_pred CCCchhHHHHHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhCCCCceeee----------ecccccccccc
Q 019890 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEAL----------VAKSGLNVFAH 225 (334)
Q Consensus 156 ~ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~P~i~vE~L----------l~~ag~dv~~H 225 (334)
..+.++..++++.+.+.|+++|-+.. |..+... .+.++.|.+..++..+-.+ ..++|++.+..
T Consensus 16 ~~~~~~k~~i~~~L~~~Gv~~iE~g~------p~~~~~~-~e~~~~l~~~~~~~~~~~~~r~~~~~v~~a~~~g~~~i~i 88 (259)
T cd07939 16 AFSREEKLAIARALDEAGVDEIEVGI------PAMGEEE-REAIRAIVALGLPARLIVWCRAVKEDIEAALRCGVTAVHI 88 (259)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEec------CCCCHHH-HHHHHHHHhcCCCCEEEEeccCCHHHHHHHHhCCcCEEEE
Confidence 57899999999999999999987742 2222122 3567777765555444333 34566776555
Q ss_pred chhhHH-HHHHhhcC-CCCCHHHHHHHHHHHHHhCCCcceEeeceEEecCCCHHHHHHHHHHHHHcCCcEEeeccCcCCC
Q 019890 226 NIETVE-ELQSAVRD-HRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRPS 303 (334)
Q Consensus 226 nlETv~-~l~~~Vr~-r~~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGlGETdEE~~etl~~Lre~gvd~vtigqYlrP~ 303 (334)
.+-+++ .++..++. +....+...+.++.+|+. |+.+.-+++-+..-+.+.+.+.++.+.++|++.+.+- -+
T Consensus 89 ~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~---G~~v~~~~~~~~~~~~~~~~~~~~~~~~~G~~~i~l~----DT 161 (259)
T cd07939 89 SIPVSDIHLAHKLGKDRAWVLDQLRRLVGRAKDR---GLFVSVGAEDASRADPDFLIEFAEVAQEAGADRLRFA----DT 161 (259)
T ss_pred EEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHC---CCeEEEeeccCCCCCHHHHHHHHHHHHHCCCCEEEeC----CC
Confidence 444443 33444441 112234445788888885 6777777776667789999999999999999988764 22
Q ss_pred CCCCcccccCCHHHHHHH
Q 019890 304 KRHMPVSEYITPEAFERY 321 (334)
Q Consensus 304 ~~h~~v~~yv~P~~f~~~ 321 (334)
..+.+|+++..+
T Consensus 162 ------~G~~~P~~v~~l 173 (259)
T cd07939 162 ------VGILDPFTTYEL 173 (259)
T ss_pred ------CCCCCHHHHHHH
Confidence 235667665444
No 159
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=96.00 E-value=0.18 Score=50.31 Aligned_cols=135 Identities=16% Similarity=0.178 Sum_probs=91.3
Q ss_pred CCCCchhHHHHHHHHHHCCCcEEEEeee-cCCCCCCchHHHHHHHHHHHHhhCCCCceeee---------eccccccccc
Q 019890 155 PPPDPDEPTNVAEAIASWGLDYVVITSV-DRDDLADQGSGHFAQTVRKLKELKPNMLIEAL---------VAKSGLNVFA 224 (334)
Q Consensus 155 ~~ld~~Ep~~~A~av~~~GlkeVVLTSv-~rdDl~d~Ga~~fa~lIr~Ik~~~P~i~vE~L---------l~~ag~dv~~ 224 (334)
..++.++-.++|+.+.+.|+++|=+++- .....|..+ ...++++.|++. ++..+-.+ ..++|++.++
T Consensus 63 ~~~s~e~Ki~ia~~L~~~GV~~IEvGs~vspk~vPqma--d~~ev~~~i~~~-~~~~~~~l~~n~~die~A~~~g~~~v~ 139 (347)
T PLN02746 63 NIVPTSVKVELIQRLVSSGLPVVEATSFVSPKWVPQLA--DAKDVMAAVRNL-EGARFPVLTPNLKGFEAAIAAGAKEVA 139 (347)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEECCCcCcccccccc--cHHHHHHHHHhc-cCCceeEEcCCHHHHHHHHHcCcCEEE
Confidence 3689999999999999999999988763 222234322 334567777652 34333233 5567888777
Q ss_pred cchhhHHHHHHhhcCCCCCHHHHH----HHHHHHHHhCCCcceEeeceEEecC-----C-CHHHHHHHHHHHHHcCCcEE
Q 019890 225 HNIETVEELQSAVRDHRANFKQSL----DVLMMAKDYVPAGTLTKTSIMLGCG-----E-TPDQVVSTMEKVRAAGVDVM 294 (334)
Q Consensus 225 HnlETv~~l~~~Vr~r~~tye~sL----~vL~~ak~~~p~Gl~tkTgiMVGlG-----E-TdEE~~etl~~Lre~gvd~v 294 (334)
..+-+++...+.- -+.+.++.+ +.++.+|+. |+.+...|..-|| . +.+.+.+.++.+.++|+|.|
T Consensus 140 i~~s~Sd~h~~~n--~~~t~~e~l~~~~~~v~~Ak~~---Gl~v~~~is~~fg~p~~~r~~~~~l~~~~~~~~~~Gad~I 214 (347)
T PLN02746 140 VFASASESFSKSN--INCSIEESLVRYREVALAAKKH---SIPVRGYVSCVVGCPIEGPVPPSKVAYVAKELYDMGCYEI 214 (347)
T ss_pred EEEecCHHHHHHH--hCCCHHHHHHHHHHHHHHHHHc---CCeEEEEEEeeecCCccCCCCHHHHHHHHHHHHHcCCCEE
Confidence 6665555433332 135566666 577777775 6888888876664 2 46778999999999999998
Q ss_pred eec
Q 019890 295 TFG 297 (334)
Q Consensus 295 tig 297 (334)
.|-
T Consensus 215 ~l~ 217 (347)
T PLN02746 215 SLG 217 (347)
T ss_pred Eec
Confidence 775
No 160
>COG1625 Fe-S oxidoreductase, related to NifB/MoaA family [Energy production and conversion]
Probab=95.99 E-value=0.11 Score=52.79 Aligned_cols=181 Identities=17% Similarity=0.233 Sum_probs=113.9
Q ss_pred CCCCC---CCCcccCCCC-CCCCCCchhHHHHHHHHHHCCCcEE-E---EeeecCCCCCCchHHHHHHHHHHHHhhCCCC
Q 019890 138 TCTRG---CRFCNVKTSR-APPPPDPDEPTNVAEAIASWGLDYV-V---ITSVDRDDLADQGSGHFAQTVRKLKELKPNM 209 (334)
Q Consensus 138 gCtr~---C~FC~V~~~r-~p~~ld~~Ep~~~A~av~~~GlkeV-V---LTSv~rdDl~d~Ga~~fa~lIr~Ik~~~P~i 209 (334)
-|... |.||-+...- ......+..+.+.-. .++|++.- + ..+.++|.+-+ -++.+.++..+...++-
T Consensus 36 ~c~~~~~~C~~cy~~v~~~~~~~~~~~~v~~e~~--~~lg~~~e~~~~~~~~~~~d~~c~---p~le~~~~r~~~~~~d~ 110 (414)
T COG1625 36 DCIPYRFGCDDCYLSVNELDTGFIPPLMVEKEPD--EDLGLEFEEVLGAKQCGNGDTFCY---PDLEPRGRRARLYYKDD 110 (414)
T ss_pred cCCCccccccceeeEEecccCCCCCHhHhhcccc--cccccccccccceeecCCCCcccC---cchhhhhhHHHhhcCCc
Confidence 34455 8888765321 012233444444332 24455321 1 22333443322 35677788887776544
Q ss_pred ceeee---------------eccccccccccchh-hHHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCcceEeeceEEecC
Q 019890 210 LIEAL---------------VAKSGLNVFAHNIE-TVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCG 273 (334)
Q Consensus 210 ~vE~L---------------l~~ag~dv~~HnlE-Tv~~l~~~Vr~r~~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGlG 273 (334)
.+.+. +.+.|+|=+...+- |.+.+.+++- +...-++.|+.|++..+. ++.+-+.+++==|
T Consensus 111 ~~rL~~tsG~~~~lt~~~~~i~~~gvdev~~SVhtT~p~lR~klm-~n~~A~~~le~L~~f~~~---~~~v~a~iVl~PG 186 (414)
T COG1625 111 DIRLSFTSGSGFTLTNRAERIIDAGVDEVYFSVHTTNPELRAKLM-KNPNAEQLLELLRRFAER---CIEVHAQIVLCPG 186 (414)
T ss_pred cceeeeeeccceeccchHHHHHHcCCCeeEEEEeeCCHHHHHHHh-cCCcHHHHHHHHHHHHHh---hhheeeEEEEcCC
Confidence 34332 66777765544444 3477776654 357778899999999886 4567777777557
Q ss_pred CC-HHHHHHHHHHHHHcCCcEEeeccCcCCC---CCCCcccccCCHHHHHHHHHHHHHh
Q 019890 274 ET-PDQVVSTMEKVRAAGVDVMTFGQYMRPS---KRHMPVSEYITPEAFERYRALGMEM 328 (334)
Q Consensus 274 ET-dEE~~etl~~Lre~gvd~vtigqYlrP~---~~h~~v~~yv~P~~f~~~~~~a~~~ 328 (334)
=. -+++.+|+.+|.+.|...+.++. ..|. .-.-++.+-.+|++.++++++.+++
T Consensus 187 vNdge~L~kT~~dL~~~g~~~~~~~~-~~pvGlt~~n~~~i~~~t~~~l~~~k~i~re~ 244 (414)
T COG1625 187 VNDGEELEKTLEDLEEWGAHEVILMR-VVPVGLTRYNRPGIRPPTPHELEEFKEIVREF 244 (414)
T ss_pred cCcHHHHHHHHHHHHHhCcCceeEEE-eecceeeecCCCCCCCCCHHHHHHHHHHHHHH
Confidence 66 78899999999999998777764 2232 1222388899999999999998877
No 161
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=95.90 E-value=0.19 Score=47.71 Aligned_cols=132 Identities=17% Similarity=0.240 Sum_probs=88.6
Q ss_pred CCCchhHHHHHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhCCCCceeee----------ecccc----cc
Q 019890 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEAL----------VAKSG----LN 221 (334)
Q Consensus 156 ~ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~P~i~vE~L----------l~~ag----~d 221 (334)
..+.++...+++++.+.|+++|-+++-.. +...+ +.++.|.+..|+..+-.+ ..+++ ++
T Consensus 16 ~~~~~~k~~i~~~L~~~Gv~~iEvg~~~~------~~~~~-~~~~~l~~~~~~~~~~~l~r~~~~~v~~a~~~~~~~~~~ 88 (268)
T cd07940 16 SLTPEEKLEIARQLDELGVDVIEAGFPAA------SPGDF-EAVKRIAREVLNAEICGLARAVKKDIDAAAEALKPAKVD 88 (268)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeCCCC------CHHHH-HHHHHHHHhCCCCEEEEEccCCHhhHHHHHHhCCCCCCC
Confidence 57899999999999999999998876431 11223 677888776676655444 33445 66
Q ss_pred ccccchhhHH-HHHHhhcC-CCCCHHHHHHHHHHHHHhCCCcceEeeceEEecCCCHHHHHHHHHHHHHcCCcEEeec
Q 019890 222 VFAHNIETVE-ELQSAVRD-HRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFG 297 (334)
Q Consensus 222 v~~HnlETv~-~l~~~Vr~-r~~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGlGETdEE~~etl~~Lre~gvd~vtig 297 (334)
++.-..-+++ +++..++- +....+...+.++.+|+. |+.+.-+.+-+.-=+.+.+.+..+.+.++|++.+.+-
T Consensus 89 ~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~---G~~v~~~~~~~~~~~~~~~~~~~~~~~~~G~~~i~l~ 163 (268)
T cd07940 89 RIHTFIATSDIHLKYKLKKTREEVLERAVEAVEYAKSH---GLDVEFSAEDATRTDLDFLIEVVEAAIEAGATTINIP 163 (268)
T ss_pred EEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHc---CCeEEEeeecCCCCCHHHHHHHHHHHHHcCCCEEEEC
Confidence 5544433332 33444440 112345566788888886 6777766665555578888999999999999988774
No 162
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=95.66 E-value=0.19 Score=47.51 Aligned_cols=145 Identities=14% Similarity=0.178 Sum_probs=90.6
Q ss_pred CCCchhHHHHHHHHHHCCCcEEEEeeecC-----C--CCCCchHHHHHHHHHHHHhhCCCCceeeeeccccccccccchh
Q 019890 156 PPDPDEPTNVAEAIASWGLDYVVITSVDR-----D--DLADQGSGHFAQTVRKLKELKPNMLIEALVAKSGLNVFAHNIE 228 (334)
Q Consensus 156 ~ld~~Ep~~~A~av~~~GlkeVVLTSv~r-----d--Dl~d~Ga~~fa~lIr~Ik~~~P~i~vE~Ll~~ag~dv~~HnlE 228 (334)
..+.++...+++.+.+.|+++|-+...+. - ..+. ... .+.++.+++..|+..+-+++. .+ ..|.+
T Consensus 18 ~~~~~~k~~i~~~L~~~Gv~~iEvg~~~~~~~~~~~~~~~~--~~~-~e~i~~~~~~~~~~~~~~~~~-~~----~~~~~ 89 (263)
T cd07943 18 QFTLEQVRAIARALDAAGVPLIEVGHGDGLGGSSLNYGFAA--HTD-EEYLEAAAEALKQAKLGVLLL-PG----IGTVD 89 (263)
T ss_pred ecCHHHHHHHHHHHHHcCCCEEEeecCCCCCCcccccCCCC--CCh-HHHHHHHHHhccCCEEEEEec-CC----ccCHH
Confidence 57899999999999999999998872210 0 0111 111 356677766556654433310 00 00112
Q ss_pred hHHHHHHh----hc--CCCCCHHHHHHHHHHHHHhCCCcceEeeceEEecCCCHHHHHHHHHHHHHcCCcEEeeccCcCC
Q 019890 229 TVEELQSA----VR--DHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRP 302 (334)
Q Consensus 229 Tv~~l~~~----Vr--~r~~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGlGETdEE~~etl~~Lre~gvd~vtigqYlrP 302 (334)
.+++.... +| ..........+.++.+|+. |+.+.-.+|-...-+++++.+.++.+.++|+|.+.+- -
T Consensus 90 ~i~~a~~~g~~~iri~~~~s~~~~~~~~i~~ak~~---G~~v~~~~~~~~~~~~~~~~~~~~~~~~~G~d~i~l~----D 162 (263)
T cd07943 90 DLKMAADLGVDVVRVATHCTEADVSEQHIGAARKL---GMDVVGFLMMSHMASPEELAEQAKLMESYGADCVYVT----D 162 (263)
T ss_pred HHHHHHHcCCCEEEEEechhhHHHHHHHHHHHHHC---CCeEEEEEEeccCCCHHHHHHHHHHHHHcCCCEEEEc----C
Confidence 22221111 11 1123455678899999986 7888888887777899999999999999999988764 2
Q ss_pred CCCCCcccccCCHHHHHHH
Q 019890 303 SKRHMPVSEYITPEAFERY 321 (334)
Q Consensus 303 ~~~h~~v~~yv~P~~f~~~ 321 (334)
+. ...+|+++.++
T Consensus 163 T~------G~~~P~~v~~l 175 (263)
T cd07943 163 SA------GAMLPDDVRER 175 (263)
T ss_pred CC------CCcCHHHHHHH
Confidence 22 25667665444
No 163
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=95.64 E-value=0.29 Score=48.76 Aligned_cols=145 Identities=18% Similarity=0.221 Sum_probs=94.9
Q ss_pred CCCCchhHHHHHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhCCCCceeee----------eccccccccc
Q 019890 155 PPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEAL----------VAKSGLNVFA 224 (334)
Q Consensus 155 ~~ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~P~i~vE~L----------l~~ag~dv~~ 224 (334)
.+++.++-.++++.+.+.|+++|-+.. |..+... .+.++.|.+..++..+-.+ ..++|++++.
T Consensus 18 ~~~s~~~k~~ia~~L~~~Gv~~IEvG~------p~~~~~~-~e~i~~i~~~~~~~~i~~~~r~~~~di~~a~~~g~~~i~ 90 (365)
T TIGR02660 18 VAFTAAEKLAIARALDEAGVDELEVGI------PAMGEEE-RAVIRAIVALGLPARLMAWCRARDADIEAAARCGVDAVH 90 (365)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEeC------CCCCHHH-HHHHHHHHHcCCCcEEEEEcCCCHHHHHHHHcCCcCEEE
Confidence 358999999999999999999987742 2222222 3567777665555433332 5667888766
Q ss_pred cchhhHHH-HHHhhcCCCCCHHHHH----HHHHHHHHhCCCcceEeeceEEecCCCHHHHHHHHHHHHHcCCcEEeeccC
Q 019890 225 HNIETVEE-LQSAVRDHRANFKQSL----DVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQY 299 (334)
Q Consensus 225 HnlETv~~-l~~~Vr~r~~tye~sL----~vL~~ak~~~p~Gl~tkTgiMVGlGETdEE~~etl~~Lre~gvd~vtigqY 299 (334)
..+-+++. +...++ .+.++.+ +.++.+|+. |+.+.-+.+-+.--+.+.+.+.++.+.++|+|.+.+-
T Consensus 91 i~~~~Sd~~~~~~~~---~s~~e~l~~~~~~i~~ak~~---g~~v~~~~ed~~r~~~~~l~~~~~~~~~~Ga~~i~l~-- 162 (365)
T TIGR02660 91 ISIPVSDLQIEAKLR---KDRAWVLERLARLVSFARDR---GLFVSVGGEDASRADPDFLVELAEVAAEAGADRFRFA-- 162 (365)
T ss_pred EEEccCHHHHHHHhC---cCHHHHHHHHHHHHHHHHhC---CCEEEEeecCCCCCCHHHHHHHHHHHHHcCcCEEEEc--
Confidence 66555443 333443 3445544 777888875 6766656655545567888999999999999987664
Q ss_pred cCCCCCCCcccccCCHHHHHHHH
Q 019890 300 MRPSKRHMPVSEYITPEAFERYR 322 (334)
Q Consensus 300 lrP~~~h~~v~~yv~P~~f~~~~ 322 (334)
-+. ...+|+++..+=
T Consensus 163 --DT~------G~~~P~~v~~lv 177 (365)
T TIGR02660 163 --DTV------GILDPFSTYELV 177 (365)
T ss_pred --ccC------CCCCHHHHHHHH
Confidence 222 366777765443
No 164
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=95.53 E-value=0.31 Score=48.88 Aligned_cols=144 Identities=17% Similarity=0.197 Sum_probs=95.4
Q ss_pred CCCchhHHHHHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhCCCCceeee----------ecccccccccc
Q 019890 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEAL----------VAKSGLNVFAH 225 (334)
Q Consensus 156 ~ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~P~i~vE~L----------l~~ag~dv~~H 225 (334)
..+.++..++++.+.+.|+++|-+.. |..+... .+.++.|.+..+...+-++ ..++|++.+..
T Consensus 22 ~~s~e~k~~ia~~L~~~GV~~IE~G~------p~~~~~~-~e~i~~i~~~~~~~~i~~~~r~~~~di~~a~~~g~~~i~i 94 (378)
T PRK11858 22 VFTNEEKLAIARMLDEIGVDQIEAGF------PAVSEDE-KEAIKAIAKLGLNASILALNRAVKSDIDASIDCGVDAVHI 94 (378)
T ss_pred CCCHHHHHHHHHHHHHhCCCEEEEeC------CCcChHH-HHHHHHHHhcCCCeEEEEEcccCHHHHHHHHhCCcCEEEE
Confidence 57899999999999999999987642 2222222 3567777654333222222 45667776666
Q ss_pred chhhHHH-HHHhhcCCCCCHHHHH----HHHHHHHHhCCCcceEeeceEEecCCCHHHHHHHHHHHHHcCCcEEeeccCc
Q 019890 226 NIETVEE-LQSAVRDHRANFKQSL----DVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYM 300 (334)
Q Consensus 226 nlETv~~-l~~~Vr~r~~tye~sL----~vL~~ak~~~p~Gl~tkTgiMVGlGETdEE~~etl~~Lre~gvd~vtigqYl 300 (334)
.+-+++. +...++ .+.++.+ +.++.+++. |+.+.-+.+-+.--+.+.+.+.++.+.++|++.+.+-
T Consensus 95 ~~~~Sd~h~~~~~~---~s~~~~l~~~~~~v~~a~~~---G~~v~~~~ed~~r~~~~~l~~~~~~~~~~Ga~~I~l~--- 165 (378)
T PRK11858 95 FIATSDIHIKHKLK---KTREEVLERMVEAVEYAKDH---GLYVSFSAEDASRTDLDFLIEFAKAAEEAGADRVRFC--- 165 (378)
T ss_pred EEcCCHHHHHHHhC---CCHHHHHHHHHHHHHHHHHC---CCeEEEEeccCCCCCHHHHHHHHHHHHhCCCCEEEEe---
Confidence 5555543 333443 4555555 477788875 6777777776666788999999999999999998775
Q ss_pred CCCCCCCcccccCCHHHHHHHH
Q 019890 301 RPSKRHMPVSEYITPEAFERYR 322 (334)
Q Consensus 301 rP~~~h~~v~~yv~P~~f~~~~ 322 (334)
-+ ..+.+|+++.++=
T Consensus 166 -DT------~G~~~P~~v~~lv 180 (378)
T PRK11858 166 -DT------VGILDPFTMYELV 180 (378)
T ss_pred -cc------CCCCCHHHHHHHH
Confidence 22 2467887765443
No 165
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=95.50 E-value=0.089 Score=48.50 Aligned_cols=130 Identities=18% Similarity=0.273 Sum_probs=82.6
Q ss_pred CCCchhHHHHHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhCCCCceeee--------------ecccccc
Q 019890 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEAL--------------VAKSGLN 221 (334)
Q Consensus 156 ~ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~P~i~vE~L--------------l~~ag~d 221 (334)
.++.++..++++.+.+.|+++|-+.... . +... .+.++.+.+..+...+..+ +.+.|++
T Consensus 10 ~~~~~~k~~i~~~L~~~Gv~~iEvg~~~---~---~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~ 82 (237)
T PF00682_consen 10 AFSTEEKLEIAKALDEAGVDYIEVGFPF---A---SEDD-FEQVRRLREALPNARLQALCRANEEDIERAVEAAKEAGID 82 (237)
T ss_dssp T--HHHHHHHHHHHHHHTTSEEEEEHCT---S---SHHH-HHHHHHHHHHHHSSEEEEEEESCHHHHHHHHHHHHHTTSS
T ss_pred CcCHHHHHHHHHHHHHhCCCEEEEcccc---c---CHHH-HHHhhhhhhhhcccccceeeeehHHHHHHHHHhhHhccCC
Confidence 4789999999999999999998886111 1 1111 2334444444344433333 3457888
Q ss_pred ccccchhhHHHHHHhhcCCCCCHHH----HHHHHHHHHHhCCCcceEeeceEEecCCCHHHHHHHHHHHHHcCCcEEeec
Q 019890 222 VFAHNIETVEELQSAVRDHRANFKQ----SLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFG 297 (334)
Q Consensus 222 v~~HnlETv~~l~~~Vr~r~~tye~----sL~vL~~ak~~~p~Gl~tkTgiMVGlGETdEE~~etl~~Lre~gvd~vtig 297 (334)
++.-.+.+++...+... +.+.++ ..+.++.+|+. |+.+.-+++-...-+++++.+.++.+.++|+|.+.+-
T Consensus 83 ~i~i~~~~s~~~~~~~~--~~~~~~~~~~~~~~v~~ak~~---g~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~ 157 (237)
T PF00682_consen 83 IIRIFISVSDLHIRKNL--NKSREEALERIEEAVKYAKEL---GYEVAFGCEDASRTDPEELLELAEALAEAGADIIYLA 157 (237)
T ss_dssp EEEEEEETSHHHHHHHT--CSHHHHHHHHHHHHHHHHHHT---TSEEEEEETTTGGSSHHHHHHHHHHHHHHT-SEEEEE
T ss_pred EEEecCcccHHHHHHhh--cCCHHHHHHHHHHHHHHHHhc---CCceEeCccccccccHHHHHHHHHHHHHcCCeEEEee
Confidence 76665555543333222 345444 44667777775 6777666666667789999999999999999999775
No 166
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=95.38 E-value=0.24 Score=47.55 Aligned_cols=137 Identities=18% Similarity=0.249 Sum_probs=89.7
Q ss_pred CCCCchhHHHHHHHHHHCCCcEEEEeeec-CCCCCCchHHHHHHHHHHHHhhCCCCceeee---------eccccccccc
Q 019890 155 PPPDPDEPTNVAEAIASWGLDYVVITSVD-RDDLADQGSGHFAQTVRKLKELKPNMLIEAL---------VAKSGLNVFA 224 (334)
Q Consensus 155 ~~ld~~Ep~~~A~av~~~GlkeVVLTSv~-rdDl~d~Ga~~fa~lIr~Ik~~~P~i~vE~L---------l~~ag~dv~~ 224 (334)
.+.+.++-.++++++.+.|+++|-+.+-. ....|..+ ...++++.|... ++..+-.+ ..++|++.+.
T Consensus 15 ~~~s~e~K~~i~~~L~~~Gv~~IEvGs~~~~~~~p~~~--d~~~~~~~l~~~-~~~~~~~~~~~~~dv~~A~~~g~~~i~ 91 (274)
T cd07938 15 TFIPTEDKIELIDALSAAGLRRIEVTSFVSPKWVPQMA--DAEEVLAGLPRR-PGVRYSALVPNLRGAERALAAGVDEVA 91 (274)
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEeCCCCCcccccccC--CHHHHHhhcccC-CCCEEEEECCCHHHHHHHHHcCcCEEE
Confidence 35788999999999999999999887532 22233222 223566666542 33433333 5566777666
Q ss_pred cchhhHHH-HHHhhcC-CCCCHHHHHHHHHHHHHhCCCcceEeeceEEecC-----C-CHHHHHHHHHHHHHcCCcEEee
Q 019890 225 HNIETVEE-LQSAVRD-HRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCG-----E-TPDQVVSTMEKVRAAGVDVMTF 296 (334)
Q Consensus 225 HnlETv~~-l~~~Vr~-r~~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGlG-----E-TdEE~~etl~~Lre~gvd~vti 296 (334)
..+-+++. +..+++. +....+..++.++.+|+. |+.+.-.++.-|| . +.+.+.+.++.+.++|+|.+.+
T Consensus 92 i~~~~Sd~~~~~~~~~s~~~~~~~~~~~v~~ak~~---G~~v~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~Ga~~i~l 168 (274)
T cd07938 92 VFVSASETFSQKNINCSIAESLERFEPVAELAKAA---GLRVRGYVSTAFGCPYEGEVPPERVAEVAERLLDLGCDEISL 168 (274)
T ss_pred EEEecCHHHHHHHcCCCHHHHHHHHHHHHHHHHHC---CCeEEEEEEeEecCCCCCCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 55544443 3444441 112345566778888885 7888888887774 4 4577889999999999999877
Q ss_pred c
Q 019890 297 G 297 (334)
Q Consensus 297 g 297 (334)
-
T Consensus 169 ~ 169 (274)
T cd07938 169 G 169 (274)
T ss_pred C
Confidence 4
No 167
>COG0602 NrdG Organic radical activating enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=95.37 E-value=0.066 Score=49.65 Aligned_cols=68 Identities=19% Similarity=0.225 Sum_probs=43.0
Q ss_pred ceEEEEeecCCCCCCCCCcccCCCCCC------CCCCchhHHHHHHHHHHC--CCcEEEEeeecCCCCCCchHHHHHHHH
Q 019890 128 ATATIMILGDTCTRGCRFCNVKTSRAP------PPPDPDEPTNVAEAIASW--GLDYVVITSVDRDDLADQGSGHFAQTV 199 (334)
Q Consensus 128 ~Tatfm~igdgCtr~C~FC~V~~~r~p------~~ld~~Ep~~~A~av~~~--GlkeVVLTSv~rdDl~d~Ga~~fa~lI 199 (334)
..+-|+.+ .||+.+|.||.-+.+..+ .+.+.+|+.+.+ .++ +.+.|+|||++- +- ...+..++
T Consensus 22 r~~vFVR~-~GC~l~C~~Cdt~~t~~~~~~~~~~~~~~~~I~~~i---~~~~~~~~~V~lTGGEP--~~---~~~l~~Ll 92 (212)
T COG0602 22 RPSVFVRF-AGCNLRCPGCDTKYTWDFNYGKPGTPMSADEILADI---KSLGYKARGVSLTGGEP--LL---QPNLLELL 92 (212)
T ss_pred ceeEEEEc-CCCCCCCCCCCChhhhcccccCCCCccCHHHHHHHH---HhcCCCcceEEEeCCcC--CC---cccHHHHH
Confidence 46777875 499999999986643211 234455555544 554 456899999984 21 12356777
Q ss_pred HHHHh
Q 019890 200 RKLKE 204 (334)
Q Consensus 200 r~Ik~ 204 (334)
+.+++
T Consensus 93 ~~l~~ 97 (212)
T COG0602 93 ELLKR 97 (212)
T ss_pred HHHHh
Confidence 77765
No 168
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=95.29 E-value=0.3 Score=46.63 Aligned_cols=142 Identities=20% Similarity=0.237 Sum_probs=90.7
Q ss_pred CCCchhHHHHHHHHHHCCCcEEEEeeecCCCCCCchHHHH--HHHHHHHHhhC-CCCceeee-------------ecccc
Q 019890 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHF--AQTVRKLKELK-PNMLIEAL-------------VAKSG 219 (334)
Q Consensus 156 ~ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~f--a~lIr~Ik~~~-P~i~vE~L-------------l~~ag 219 (334)
..+.++..++|+.+.+.|+++|=+.-.....-...|...| .+.+++|.+.. ++..+-.+ ..+.|
T Consensus 16 ~f~~~~~~~ia~~L~~~GVd~IEvG~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~g 95 (266)
T cd07944 16 DFGDEFVKAIYRALAAAGIDYVEIGYRSSPEKEFKGKSAFCDDEFLRRLLGDSKGNTKIAVMVDYGNDDIDLLEPASGSV 95 (266)
T ss_pred cCCHHHHHHHHHHHHHCCCCEEEeecCCCCccccCCCccCCCHHHHHHHHhhhccCCEEEEEECCCCCCHHHHHHHhcCC
Confidence 4789999999999999999998775222100000110000 23344443332 23333332 12223
Q ss_pred ccccccchhhHHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCcceEeeceEEecCCCHHHHHHHHHHHHHcCCcEEeeccC
Q 019890 220 LNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQY 299 (334)
Q Consensus 220 ~dv~~HnlETv~~l~~~Vr~r~~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGlGETdEE~~etl~~Lre~gvd~vtigqY 299 (334)
++.+.-. .+....++.++.++.+|+. |+.+.-+++-.++=+++.+.+.++.+.++|++.+.+-
T Consensus 96 v~~iri~------------~~~~~~~~~~~~i~~ak~~---G~~v~~~~~~a~~~~~~~~~~~~~~~~~~g~~~i~l~-- 158 (266)
T cd07944 96 VDMIRVA------------FHKHEFDEALPLIKAIKEK---GYEVFFNLMAISGYSDEELLELLELVNEIKPDVFYIV-- 158 (266)
T ss_pred cCEEEEe------------cccccHHHHHHHHHHHHHC---CCeEEEEEEeecCCCHHHHHHHHHHHHhCCCCEEEEe--
Confidence 3322211 1346788899999999986 7889999999999999999999999999999998764
Q ss_pred cCCCCCCCcccccCCHHHHHHHH
Q 019890 300 MRPSKRHMPVSEYITPEAFERYR 322 (334)
Q Consensus 300 lrP~~~h~~v~~yv~P~~f~~~~ 322 (334)
-+. ...+|+++.++=
T Consensus 159 --DT~------G~~~P~~v~~lv 173 (266)
T cd07944 159 --DSF------GSMYPEDIKRII 173 (266)
T ss_pred --cCC------CCCCHHHHHHHH
Confidence 222 366776655443
No 169
>COG0820 Predicted Fe-S-cluster redox enzyme [General function prediction only]
Probab=95.16 E-value=0.37 Score=48.13 Aligned_cols=153 Identities=13% Similarity=0.225 Sum_probs=91.1
Q ss_pred cCCCCCCCCCcccCCCCCCCCCCchhHHHHHHHHHH-CC------CcEEEEeeecCCCCCCchHHHHHHHHHHHHhhCCC
Q 019890 136 GDTCTRGCRFCNVKTSRAPPPPDPDEPTNVAEAIAS-WG------LDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPN 208 (334)
Q Consensus 136 gdgCtr~C~FC~V~~~r~p~~ld~~Ep~~~A~av~~-~G------lkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~P~ 208 (334)
+-||.-+|+||+-....-..-+...||..+...+++ .| +..||+-|-.- | ...|..++.++.-.+.+
T Consensus 108 QvGC~~~C~FCaTg~~G~~RNLs~~EIv~Qv~~~~~~~~~~~~~~i~NVV~MGMGE---P---l~N~dnV~~a~~i~~~~ 181 (349)
T COG0820 108 QVGCPVGCTFCATGQGGLNRNLSAGEIVEQVLLAAKALGEDFGRRISNVVFMGMGE---P---LLNLDNVVKALEIINDD 181 (349)
T ss_pred CCCcCCCCCeeccccccceeccCHHHHHHHHHHHHHhcCccccceeeeEEEecCCc---h---hhhHHHHHHHHHhhcCc
Confidence 569999999998776432346899999988887653 22 45677766421 1 34566666666554422
Q ss_pred --Cce--eee-ecccc------------cc----ccccchh-hH-HHHHHhhcCCCCCHHHHHHHHHHHHHhCCCcceEe
Q 019890 209 --MLI--EAL-VAKSG------------LN----VFAHNIE-TV-EELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTK 265 (334)
Q Consensus 209 --i~v--E~L-l~~ag------------~d----v~~HnlE-Tv-~~l~~~Vr~r~~tye~sL~vL~~ak~~~p~Gl~tk 265 (334)
+.+ ..+ +..+| ++ +--|... .. ..|+|. . +.+..+..++.++...+.-...+..-
T Consensus 182 ~G~~ls~R~iTvSTsGi~~~I~~l~~~~~~v~LAiSLHa~nd~lR~~L~Pi-n-k~~~~e~l~~a~r~Y~~~t~~rVt~E 259 (349)
T COG0820 182 EGLGLSKRRITVSTSGIVPRIRKLADEQLGVALAISLHAPNDELRDQLMPI-N-KKYPIEELLEAIRYYPEKSGRRVTFE 259 (349)
T ss_pred ccccccceEEEEecCCCchhHHHHHhhcCCeEEEEecCCCCHHHHhhhhcc-c-cCCCHHHHHHHHHhhhhccCceEEEE
Confidence 222 111 22222 22 2223221 12 233333 4 57888888888888776544322223
Q ss_pred eceEEecCCCHHHHHHHHHHHHHcCCcEEeec
Q 019890 266 TSIMLGCGETPDQVVSTMEKVRAAGVDVMTFG 297 (334)
Q Consensus 266 TgiMVGlGETdEE~~etl~~Lre~gvd~vtig 297 (334)
=.+|=|.--..|+-.++.+.|+.+.+ +|.+=
T Consensus 260 Y~Ll~~VND~~e~A~~L~~ll~~~~~-~VNLI 290 (349)
T COG0820 260 YVLLDGVNDSLEHAKELAKLLKGIPC-KVNLI 290 (349)
T ss_pred eeecccccCCHHHHHHHHHHhcCCCc-eEEEe
Confidence 34455668889999999999999987 44443
No 170
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=95.10 E-value=0.51 Score=47.03 Aligned_cols=147 Identities=16% Similarity=0.249 Sum_probs=98.2
Q ss_pred CCCCchhHHHHHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhCCCCceeee----------eccccccccc
Q 019890 155 PPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEAL----------VAKSGLNVFA 224 (334)
Q Consensus 155 ~~ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~P~i~vE~L----------l~~ag~dv~~ 224 (334)
..++.++..++|+.+.+.|+++|-+.+-.. +... .+.++.|.+..+...+-.+ ..++|++.+.
T Consensus 17 ~~~s~~~k~~ia~~L~~~Gv~~IEvG~p~~------~~~~-~e~i~~i~~~~~~~~v~~~~r~~~~di~~a~~~g~~~i~ 89 (363)
T TIGR02090 17 VSLTVEQKVEIARKLDELGVDVIEAGFPIA------SEGE-FEAIKKISQEGLNAEICSLARALKKDIDKAIDCGVDSIH 89 (363)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEeCCCC------ChHH-HHHHHHHHhcCCCcEEEEEcccCHHHHHHHHHcCcCEEE
Confidence 358899999999999999999998754321 1122 3667777765554444332 5667777766
Q ss_pred cchhhHHH-HHHhhc-CCCCCHHHHHHHHHHHHHhCCCcceEeeceEEecCCCHHHHHHHHHHHHHcCCcEEeeccCcCC
Q 019890 225 HNIETVEE-LQSAVR-DHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRP 302 (334)
Q Consensus 225 HnlETv~~-l~~~Vr-~r~~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGlGETdEE~~etl~~Lre~gvd~vtigqYlrP 302 (334)
..+-+++. +...++ ++....+...+.++.+|+. |+.+.-+++-+.--+.+.+.+.++.+.++|+|.+.+.-
T Consensus 90 i~~~~Sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~---G~~v~~~~eda~r~~~~~l~~~~~~~~~~g~~~i~l~D---- 162 (363)
T TIGR02090 90 TFIATSPIHLKYKLKKSRDEVLEKAVEAVEYAKEH---GLIVEFSAEDATRTDIDFLIKVFKRAEEAGADRINIAD---- 162 (363)
T ss_pred EEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHc---CCEEEEEEeecCCCCHHHHHHHHHHHHhCCCCEEEEeC----
Confidence 55544443 233333 1122356666888888886 68787777766667789999999999999999987652
Q ss_pred CCCCCcccccCCHHHHHHH
Q 019890 303 SKRHMPVSEYITPEAFERY 321 (334)
Q Consensus 303 ~~~h~~v~~yv~P~~f~~~ 321 (334)
+ ....+|+++.++
T Consensus 163 T------~G~~~P~~v~~l 175 (363)
T TIGR02090 163 T------VGVLTPQKMEEL 175 (363)
T ss_pred C------CCccCHHHHHHH
Confidence 1 136677665444
No 171
>COG5014 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=94.84 E-value=0.11 Score=47.52 Aligned_cols=126 Identities=17% Similarity=0.225 Sum_probs=71.5
Q ss_pred CCCCCCCCcccCCCCCC-----CCCCchhHHHHHHHH-HHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhCCCCce
Q 019890 138 TCTRGCRFCNVKTSRAP-----PPPDPDEPTNVAEAI-ASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLI 211 (334)
Q Consensus 138 gCtr~C~FC~V~~~r~p-----~~ld~~Ep~~~A~av-~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~P~i~v 211 (334)
||+-.|.||-....+.+ ..+.|+|+.+....+ ++.|.+-|-|.|.. |--+.+|+.++|+-+.+. ..-+
T Consensus 50 GCnl~CayCw~y~r~~~~~rag~f~~P~eVaeRL~ei~K~~g~d~vRiSG~E----P~l~~EHvlevIeLl~~~--tFvl 123 (228)
T COG5014 50 GCNLLCAYCWNYFRNLRPKRAGDFLSPEEVAERLLEISKKRGCDLVRISGAE----PILGREHVLEVIELLVNN--TFVL 123 (228)
T ss_pred ccceeeHHhhhhhhcCCccccccccCHHHHHHHHHHHHHhcCCcEEEeeCCC----ccccHHHHHHHHHhccCc--eEEE
Confidence 89999999987432211 134555554333333 66899988888765 555778999988765221 1223
Q ss_pred eee--e---cccccccccc--c------hhh-HHHHHHhhcC-CCCCHHHHHHHHHHHHHhCCCcceEeeceEEec
Q 019890 212 EAL--V---AKSGLNVFAH--N------IET-VEELQSAVRD-HRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC 272 (334)
Q Consensus 212 E~L--l---~~ag~dv~~H--n------lET-v~~l~~~Vr~-r~~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGl 272 (334)
|.- + ..+-++-+.. | +.. -|+=|.+|.. ...-|..-|+.|+.+.+. |+..---+|.||
T Consensus 124 ETNG~~~g~drslv~el~nr~nv~vRVsvKG~dpesF~kIT~asp~~F~~QL~aLr~L~~~---g~rf~pA~~~~f 196 (228)
T COG5014 124 ETNGLMFGFDRSLVDELVNRLNVLVRVSVKGWDPESFEKITGASPEYFRYQLKALRHLHGK---GHRFWPAVVYDF 196 (228)
T ss_pred EeCCeEEecCHHHHHHHhcCCceEEEEEecCCCHHHHHHHhcCChHHHHHHHHHHHHHHhc---Cceeeehhhhcc
Confidence 321 1 1111111111 1 110 1233333321 122377778888888874 788888999999
No 172
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=94.56 E-value=0.53 Score=46.59 Aligned_cols=146 Identities=17% Similarity=0.231 Sum_probs=91.3
Q ss_pred CCCchhHHHHHHHHHHCCCcEEEEeeecCCCCC----Cch--HHHHHHHHHHHHhhCCCCceeeeeccccccccccchhh
Q 019890 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRDDLA----DQG--SGHFAQTVRKLKELKPNMLIEALVAKSGLNVFAHNIET 229 (334)
Q Consensus 156 ~ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~----d~G--a~~fa~lIr~Ik~~~P~i~vE~Ll~~ag~dv~~HnlET 229 (334)
..+.++...+++++.+.|+++|-++-++. +. ++| +..=.+.++++++..++..+-+++. .|. .+++.
T Consensus 21 ~f~~~~~~~i~~~L~~aGv~~IEvg~~~g--~g~~s~~~g~~~~~~~e~i~~~~~~~~~~~~~~ll~-pg~----~~~~d 93 (337)
T PRK08195 21 QYTLEQVRAIARALDAAGVPVIEVTHGDG--LGGSSFNYGFGAHTDEEYIEAAAEVVKQAKIAALLL-PGI----GTVDD 93 (337)
T ss_pred ccCHHHHHHHHHHHHHcCCCEEEeecCCC--CCCccccCCCCCCCHHHHHHHHHHhCCCCEEEEEec-cCc----ccHHH
Confidence 57899999999999999999998873321 10 001 0001356666665556655544311 000 01111
Q ss_pred HHHHHH----hhc--CCCCCHHHHHHHHHHHHHhCCCcceEeeceEEecCCCHHHHHHHHHHHHHcCCcEEeeccCcCCC
Q 019890 230 VEELQS----AVR--DHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRPS 303 (334)
Q Consensus 230 v~~l~~----~Vr--~r~~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGlGETdEE~~etl~~Lre~gvd~vtigqYlrP~ 303 (334)
++.... .|| ......+...+.++.+|+. |+.+.-.+|....-+++++.+.++.+.+.|+|.+.|- -+
T Consensus 94 l~~a~~~gvd~iri~~~~~e~~~~~~~i~~ak~~---G~~v~~~l~~a~~~~~e~l~~~a~~~~~~Ga~~i~i~----DT 166 (337)
T PRK08195 94 LKMAYDAGVRVVRVATHCTEADVSEQHIGLAREL---GMDTVGFLMMSHMAPPEKLAEQAKLMESYGAQCVYVV----DS 166 (337)
T ss_pred HHHHHHcCCCEEEEEEecchHHHHHHHHHHHHHC---CCeEEEEEEeccCCCHHHHHHHHHHHHhCCCCEEEeC----CC
Confidence 111111 011 1123346778899999996 7888888998888899999999999999999988664 22
Q ss_pred CCCCcccccCCHHHHHHH
Q 019890 304 KRHMPVSEYITPEAFERY 321 (334)
Q Consensus 304 ~~h~~v~~yv~P~~f~~~ 321 (334)
. .+.+|+++.++
T Consensus 167 ~------G~~~P~~v~~~ 178 (337)
T PRK08195 167 A------GALLPEDVRDR 178 (337)
T ss_pred C------CCCCHHHHHHH
Confidence 2 35677665443
No 173
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=94.26 E-value=0.8 Score=45.31 Aligned_cols=145 Identities=17% Similarity=0.255 Sum_probs=89.7
Q ss_pred CCCchhHHHHHHHHHHCCCcEEEEeeecCCCCC----Cch---HHHHHHHHHHHHhhCCCCceeeeeccccccccccchh
Q 019890 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRDDLA----DQG---SGHFAQTVRKLKELKPNMLIEALVAKSGLNVFAHNIE 228 (334)
Q Consensus 156 ~ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~----d~G---a~~fa~lIr~Ik~~~P~i~vE~Ll~~ag~dv~~HnlE 228 (334)
..+.++...+++++.+.|+.+|-++-++. +. ++| ...+ +-++++.+..++..+-+++ ..|. .+++
T Consensus 20 ~f~~~~~~~ia~~Ld~aGV~~IEvg~g~g--l~g~s~~~G~~~~~~~-e~i~~~~~~~~~~~~~~ll-~pg~----~~~~ 91 (333)
T TIGR03217 20 QFTIEQVRAIAAALDEAGVDAIEVTHGDG--LGGSSFNYGFSAHTDL-EYIEAAADVVKRAKVAVLL-LPGI----GTVH 91 (333)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEEecCCC--CCCccccCCCCCCChH-HHHHHHHHhCCCCEEEEEe-ccCc----cCHH
Confidence 57899999999999999999999973221 10 011 0112 3444554444544443331 1110 0111
Q ss_pred hHHHHHH----hhc--CCCCCHHHHHHHHHHHHHhCCCcceEeeceEEecCCCHHHHHHHHHHHHHcCCcEEeeccCcCC
Q 019890 229 TVEELQS----AVR--DHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRP 302 (334)
Q Consensus 229 Tv~~l~~----~Vr--~r~~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGlGETdEE~~etl~~Lre~gvd~vtigqYlrP 302 (334)
-++.... .|| ......+...+.++.+|+. |+.+.-.+|..+.-++|++.+..+.+.+.|++.+.|- -
T Consensus 92 dl~~a~~~gvd~iri~~~~~e~d~~~~~i~~ak~~---G~~v~~~l~~s~~~~~e~l~~~a~~~~~~Ga~~i~i~----D 164 (333)
T TIGR03217 92 DLKAAYDAGARTVRVATHCTEADVSEQHIGMAREL---GMDTVGFLMMSHMTPPEKLAEQAKLMESYGADCVYIV----D 164 (333)
T ss_pred HHHHHHHCCCCEEEEEeccchHHHHHHHHHHHHHc---CCeEEEEEEcccCCCHHHHHHHHHHHHhcCCCEEEEc----c
Confidence 1111111 111 1123346778999999986 7888888998889999999999999999999988764 2
Q ss_pred CCCCCcccccCCHHHHHHH
Q 019890 303 SKRHMPVSEYITPEAFERY 321 (334)
Q Consensus 303 ~~~h~~v~~yv~P~~f~~~ 321 (334)
+ ..+.+|+++.++
T Consensus 165 T------~G~~~P~~v~~~ 177 (333)
T TIGR03217 165 S------AGAMLPDDVRDR 177 (333)
T ss_pred C------CCCCCHHHHHHH
Confidence 2 235677665443
No 174
>PRK09389 (R)-citramalate synthase; Provisional
Probab=93.22 E-value=2.2 Score=44.44 Aligned_cols=145 Identities=17% Similarity=0.167 Sum_probs=91.6
Q ss_pred CCCCchhHHHHHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhCCCCceeee----------eccccccccc
Q 019890 155 PPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEAL----------VAKSGLNVFA 224 (334)
Q Consensus 155 ~~ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~P~i~vE~L----------l~~ag~dv~~ 224 (334)
.+++.++-.++|+.+.++|+++|-+.+--. +...+ +.++.|.+...+..+-.+ ..++|.++++
T Consensus 19 ~~~s~e~K~~ia~~L~~~Gv~~IE~G~p~~------~~~d~-e~v~~i~~~~~~~~i~a~~r~~~~di~~a~~~g~~~v~ 91 (488)
T PRK09389 19 VSLTPEEKLEIARKLDELGVDVIEAGSAIT------SEGER-EAIKAVTDEGLNAEICSFARAVKVDIDAALECDVDSVH 91 (488)
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEEeCCcC------CHHHH-HHHHHHHhcCCCcEEEeecccCHHHHHHHHhCCcCEEE
Confidence 368999999999999999999998865321 11222 456666654433333222 5567777766
Q ss_pred cchhhHHHHHHhhcCCCCCHHHHH----HHHHHHHHhCCCcceEeeceEEecCCCHHHHHHHHHHHHHcCCcEEeeccCc
Q 019890 225 HNIETVEELQSAVRDHRANFKQSL----DVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYM 300 (334)
Q Consensus 225 HnlETv~~l~~~Vr~r~~tye~sL----~vL~~ak~~~p~Gl~tkTgiMVGlGETdEE~~etl~~Lre~gvd~vtigqYl 300 (334)
..+-+++......- +.+.++.+ +.++.+|+. |+.+.-+.+-+.--+.+-+.+.++.+.+.|+|.+.+-
T Consensus 92 i~~~~Sd~h~~~~l--~~s~~e~l~~~~~~v~~ak~~---g~~v~~~~ed~~r~~~~~l~~~~~~~~~~Ga~~i~l~--- 163 (488)
T PRK09389 92 LVVPTSDLHIEYKL--KKTREEVLETAVEAVEYAKDH---GLIVELSGEDASRADLDFLKELYKAGIEAGADRICFC--- 163 (488)
T ss_pred EEEccCHHHHHHHh--CCCHHHHHHHHHHHHHHHHHC---CCEEEEEEeeCCCCCHHHHHHHHHHHHhCCCCEEEEe---
Confidence 66655544332222 24455544 556677774 6777777776544445666699999999999997664
Q ss_pred CCCCCCCcccccCCHHHHHHH
Q 019890 301 RPSKRHMPVSEYITPEAFERY 321 (334)
Q Consensus 301 rP~~~h~~v~~yv~P~~f~~~ 321 (334)
-+ ..+.+|+++..+
T Consensus 164 -DT------vG~~~P~~~~~l 177 (488)
T PRK09389 164 -DT------VGILTPEKTYEL 177 (488)
T ss_pred -cC------CCCcCHHHHHHH
Confidence 22 236677665544
No 175
>PRK00915 2-isopropylmalate synthase; Validated
Probab=92.71 E-value=2.5 Score=44.17 Aligned_cols=144 Identities=17% Similarity=0.232 Sum_probs=89.8
Q ss_pred CCCCchhHHHHHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhCCCCceeee--------------eccccc
Q 019890 155 PPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEAL--------------VAKSGL 220 (334)
Q Consensus 155 ~~ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~P~i~vE~L--------------l~~ag~ 220 (334)
.+++.++-.++|+.+.+.|+++|-+..-- .+...+ +.+++|.+..++..+-.+ +.+++.
T Consensus 21 ~~~s~e~K~~ia~~L~~~Gv~~IE~G~p~------~s~~d~-~~v~~i~~~~~~~~i~a~~r~~~~did~a~~a~~~~~~ 93 (513)
T PRK00915 21 ASLTVEEKLQIAKQLERLGVDVIEAGFPA------SSPGDF-EAVKRIARTVKNSTVCGLARAVKKDIDAAAEALKPAEA 93 (513)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEcCCC------CChHHH-HHHHHHHhhCCCCEEEEEccCCHHHHHHHHHHhhcCCC
Confidence 35899999999999999999999875421 112223 345666555555544443 235566
Q ss_pred cccccchhhHHH-HHHhhcCCCCCHHHHH----HHHHHHHHhCCCcceEeeceEEecCCCHHHHHHHHHHHHHcCCcEEe
Q 019890 221 NVFAHNIETVEE-LQSAVRDHRANFKQSL----DVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMT 295 (334)
Q Consensus 221 dv~~HnlETv~~-l~~~Vr~r~~tye~sL----~vL~~ak~~~p~Gl~tkTgiMVGlGETdEE~~etl~~Lre~gvd~vt 295 (334)
+.++..+-+++- +...++ .+.++.+ +.++.+|+. |+.+.-+.+-+.--+.+.+.+.++.+.++|++.+.
T Consensus 94 ~~v~i~~~~Sd~h~~~~l~---~s~~e~l~~~~~~v~~ak~~---g~~v~f~~ed~~r~d~~~l~~~~~~~~~~Ga~~i~ 167 (513)
T PRK00915 94 PRIHTFIATSPIHMEYKLK---MSREEVLEMAVEAVKYARSY---TDDVEFSAEDATRTDLDFLCRVVEAAIDAGATTIN 167 (513)
T ss_pred CEEEEEECCcHHHHHHHhC---CCHHHHHHHHHHHHHHHHHC---CCeEEEEeCCCCCCCHHHHHHHHHHHHHcCCCEEE
Confidence 655555545433 333333 4455555 677788875 56665444444434456689999999999999887
Q ss_pred eccCcCCCCCCCcccccCCHHHHHHH
Q 019890 296 FGQYMRPSKRHMPVSEYITPEAFERY 321 (334)
Q Consensus 296 igqYlrP~~~h~~v~~yv~P~~f~~~ 321 (334)
+- -+ ..+.+|+++..+
T Consensus 168 l~----DT------vG~~~P~~~~~~ 183 (513)
T PRK00915 168 IP----DT------VGYTTPEEFGEL 183 (513)
T ss_pred Ec----cC------CCCCCHHHHHHH
Confidence 64 22 235577665444
No 176
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=91.93 E-value=2.8 Score=40.47 Aligned_cols=131 Identities=18% Similarity=0.270 Sum_probs=81.1
Q ss_pred CCCchhHHHHHHHH-HHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhCCC---C-ceeee-----------ecccc
Q 019890 156 PPDPDEPTNVAEAI-ASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPN---M-LIEAL-----------VAKSG 219 (334)
Q Consensus 156 ~ld~~Ep~~~A~av-~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~P~---i-~vE~L-----------l~~ag 219 (334)
.++.++-.++++++ .++|+++|=+++--. ..+.+ +.|+++.+...- + .++++ ..++|
T Consensus 15 ~~s~e~K~~i~~~L~~~~Gv~~IEvg~~~~------s~~e~-~av~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~A~~~g 87 (280)
T cd07945 15 SFSPSEKLNIAKILLQELKVDRIEVASARV------SEGEF-EAVQKIIDWAAEEGLLDRIEVLGFVDGDKSVDWIKSAG 87 (280)
T ss_pred ccCHHHHHHHHHHHHHHhCCCEEEecCCCC------CHHHH-HHHHHHHHHhhhhccccCcEEEEecCcHHHHHHHHHCC
Confidence 57899999999996 788999998876311 11122 455555432100 0 12222 34457
Q ss_pred ccccccchhhHH-HHHHhhc-CCCCCHHHHHHHHHHHHHhCCCcceEeeceEEecC---C-CHHHHHHHHHHHHHcCCcE
Q 019890 220 LNVFAHNIETVE-ELQSAVR-DHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCG---E-TPDQVVSTMEKVRAAGVDV 293 (334)
Q Consensus 220 ~dv~~HnlETv~-~l~~~Vr-~r~~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGlG---E-TdEE~~etl~~Lre~gvd~ 293 (334)
.+.++..+-+++ .....++ ++....++..++++.+|+. |+.+.-+++- || . +.+.+.+.++.+.++|++.
T Consensus 88 ~~~i~i~~~~S~~h~~~~~~~t~~e~l~~~~~~i~~a~~~---G~~v~~~~~d-~~~~~r~~~~~~~~~~~~~~~~G~~~ 163 (280)
T cd07945 88 AKVLNLLTKGSLKHCTEQLRKTPEEHFADIREVIEYAIKN---GIEVNIYLED-WSNGMRDSPDYVFQLVDFLSDLPIKR 163 (280)
T ss_pred CCEEEEEEeCCHHHHHHHHCcCHHHHHHHHHHHHHHHHhC---CCEEEEEEEe-CCCCCcCCHHHHHHHHHHHHHcCCCE
Confidence 776555544443 2333333 1122333445667777775 6888888876 66 3 5888999999999999999
Q ss_pred Eeec
Q 019890 294 MTFG 297 (334)
Q Consensus 294 vtig 297 (334)
+.+.
T Consensus 164 i~l~ 167 (280)
T cd07945 164 IMLP 167 (280)
T ss_pred EEec
Confidence 8775
No 177
>PF05853 DUF849: Prokaryotic protein of unknown function (DUF849); InterPro: IPR008567 This family consists of several hypothetical prokaryotic proteins with no known function.; PDB: 3C6C_A 2Y7G_B 2Y7F_B 2Y7D_D 2Y7E_B 3LOT_A 3FA5_B 3NO5_C 3E02_A 3E49_B ....
Probab=91.81 E-value=1.6 Score=42.00 Aligned_cols=59 Identities=22% Similarity=0.315 Sum_probs=43.1
Q ss_pred CCCCchhHHHHHHHHHHCCCcEEEEeee-cCCCCCCchHHHHHHHHHHHHhhCCCCceee
Q 019890 155 PPPDPDEPTNVAEAIASWGLDYVVITSV-DRDDLADQGSGHFAQTVRKLKELKPNMLIEA 213 (334)
Q Consensus 155 ~~ld~~Ep~~~A~av~~~GlkeVVLTSv-~rdDl~d~Ga~~fa~lIr~Ik~~~P~i~vE~ 213 (334)
.|..++|+.+.|.+..+.|..-|-+=.. +.|..+....+.|+++++.|++..|++.|.+
T Consensus 21 lP~tpeEia~~A~~c~~AGAa~vH~H~R~~~~G~~s~d~~~~~e~~~~IR~~~pd~iv~~ 80 (272)
T PF05853_consen 21 LPITPEEIAADAVACYEAGAAIVHIHARDDEDGRPSLDPELYAEVVEAIRAACPDLIVQP 80 (272)
T ss_dssp S--SHHHHHHHHHHHHHHTESEEEE-EE-TTTS-EE--HHHHHHHHHHHHHHSTTSEEEE
T ss_pred CCCCHHHHHHHHHHHHHcCCcEEEeecCCCCCCCcCCCHHHHHHHHHHHHHHCCCeEEEe
Confidence 4789999999999999999988888665 3332233446899999999999989875554
No 178
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=91.66 E-value=6.1 Score=37.82 Aligned_cols=138 Identities=16% Similarity=0.185 Sum_probs=85.4
Q ss_pred CCCchhHHHHHHHHHHCCCcEEEEeeecCCC--CCCchHHHHHHHHHHHHhhCCCCceeeeec-c--ccccccccch--h
Q 019890 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRDD--LADQGSGHFAQTVRKLKELKPNMLIEALVA-K--SGLNVFAHNI--E 228 (334)
Q Consensus 156 ~ld~~Ep~~~A~av~~~GlkeVVLTSv~rdD--l~d~Ga~~fa~lIr~Ik~~~P~i~vE~Ll~-~--ag~dv~~Hnl--E 228 (334)
..+.+|..++|..+.+.|+.+|-+.+.-.-+ +..-+... .+.|+.|.+..|+..+-.+.. . -+...++.|+ +
T Consensus 17 ~~~~~~~~~ia~~L~~~Gv~~iE~G~~a~~~~~~~~~~~~~-~e~i~~~~~~~~~~~l~~~~r~~~~~~~~~~p~~~~~~ 95 (275)
T cd07937 17 RMRTEDMLPIAEALDEAGFFSLEVWGGATFDVCMRFLNEDP-WERLRELRKAMPNTPLQMLLRGQNLVGYRHYPDDVVEL 95 (275)
T ss_pred eccHHHHHHHHHHHHHcCCCEEEccCCcchhhhccccCCCH-HHHHHHHHHhCCCCceehhcccccccCccCCCcHHHHH
Confidence 4788999999999999999999776532100 00001111 356677777666655544411 1 2223344442 1
Q ss_pred hHHHHHHh----hc--CCCCCHHHHHHHHHHHHHhCCCcceEeeceEEec--CCCHHHHHHHHHHHHHcCCcEEeec
Q 019890 229 TVEELQSA----VR--DHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC--GETPDQVVSTMEKVRAAGVDVMTFG 297 (334)
Q Consensus 229 Tv~~l~~~----Vr--~r~~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGl--GETdEE~~etl~~Lre~gvd~vtig 297 (334)
.++..... || .+..+.++..+.++.+|+. |+.+...++.-+ .=+++.+.+.++.+.++|+|.+.+-
T Consensus 96 di~~~~~~g~~~iri~~~~~~~~~~~~~i~~ak~~---G~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~Ga~~i~l~ 169 (275)
T cd07937 96 FVEKAAKNGIDIFRIFDALNDVRNLEVAIKAVKKA---GKHVEGAICYTGSPVHTLEYYVKLAKELEDMGADSICIK 169 (275)
T ss_pred HHHHHHHcCCCEEEEeecCChHHHHHHHHHHHHHC---CCeEEEEEEecCCCCCCHHHHHHHHHHHHHcCCCEEEEc
Confidence 22222211 11 1234678888999999986 676666665533 3467888999999999999998775
No 179
>TIGR00973 leuA_bact 2-isopropylmalate synthase, bacterial type. A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases found primarily in Bacteria. The homologous families in the Archaea may represent isozymes and/or related enzymes.
Probab=90.90 E-value=5.9 Score=41.34 Aligned_cols=144 Identities=15% Similarity=0.169 Sum_probs=86.7
Q ss_pred CCCCchhHHHHHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhCCCCceeee--------------eccccc
Q 019890 155 PPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEAL--------------VAKSGL 220 (334)
Q Consensus 155 ~~ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~P~i~vE~L--------------l~~ag~ 220 (334)
.+++.++-.++|+.+.++|+++|=+..-. .+...+ +.++.|.+..++..+-.+ +..++.
T Consensus 18 ~~~s~e~K~~ia~~L~~~GV~~IEvG~p~------~s~~d~-e~v~~i~~~~~~~~i~al~r~~~~did~a~~al~~~~~ 90 (494)
T TIGR00973 18 ASLTVEEKLQIALALERLGVDIIEAGFPV------SSPGDF-EAVQRIARTVKNPRVCGLARCVEKDIDAAAEALKPAEK 90 (494)
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEEECCC------CCHHHH-HHHHHHHHhCCCCEEEEEcCCCHHhHHHHHHhccccCC
Confidence 35899999999999999999999764322 122233 344666555454444433 222334
Q ss_pred cccccchhhHHH-HHHhhcCCCCCHHHHH----HHHHHHHHhCCCcceEeeceEEecCCCHHHHHHHHHHHHHcCCcEEe
Q 019890 221 NVFAHNIETVEE-LQSAVRDHRANFKQSL----DVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMT 295 (334)
Q Consensus 221 dv~~HnlETv~~-l~~~Vr~r~~tye~sL----~vL~~ak~~~p~Gl~tkTgiMVGlGETdEE~~etl~~Lre~gvd~vt 295 (334)
+.++-.+-+++. +...++ .+.++.+ +.++.+|+. |..+.-+.+-+.--..+.+.+.++.+.++|++.+.
T Consensus 91 ~~v~i~~~~S~~h~~~~l~---~s~~e~l~~~~~~v~~a~~~---g~~v~f~~Ed~~r~d~~~l~~~~~~~~~~Ga~~i~ 164 (494)
T TIGR00973 91 FRIHTFIATSPIHLEHKLK---MTRDEVLERAVGMVKYAKNF---TDDVEFSCEDAGRTEIPFLARIVEAAINAGATTIN 164 (494)
T ss_pred CEEEEEEccCHHHHHHHhC---CCHHHHHHHHHHHHHHHHHc---CCeEEEEcCCCCCCCHHHHHHHHHHHHHcCCCEEE
Confidence 444444434432 333333 4455555 577777775 55555555555545677888999999999999887
Q ss_pred eccCcCCCCCCCcccccCCHHHHHHH
Q 019890 296 FGQYMRPSKRHMPVSEYITPEAFERY 321 (334)
Q Consensus 296 igqYlrP~~~h~~v~~yv~P~~f~~~ 321 (334)
+- -+ ..+.+|+++..+
T Consensus 165 l~----DT------vG~~~P~~~~~~ 180 (494)
T TIGR00973 165 IP----DT------VGYALPAEYGNL 180 (494)
T ss_pred eC----CC------CCCCCHHHHHHH
Confidence 64 11 236667665443
No 180
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=89.91 E-value=5.3 Score=41.87 Aligned_cols=135 Identities=17% Similarity=0.191 Sum_probs=84.8
Q ss_pred CCCchhHHHHHHHHHHCCCcEEEEeeecCCC-----CCCchHHHHHHHHHHHHhhCCCCceeeeeccccccccccchh-h
Q 019890 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRDD-----LADQGSGHFAQTVRKLKELKPNMLIEALVAKSGLNVFAHNIE-T 229 (334)
Q Consensus 156 ~ld~~Ep~~~A~av~~~GlkeVVLTSv~rdD-----l~d~Ga~~fa~lIr~Ik~~~P~i~vE~Ll~~ag~dv~~HnlE-T 229 (334)
.++.++...+|+++.+.|+..|=..|+..-| +.. .. .+.|++|++..|++.+..|+.-.++=-|.|.-+ .
T Consensus 23 r~~t~d~l~ia~~ld~~G~~siE~~GGatfd~~~rfl~E---dp-werlr~lr~~~~nt~lqmL~Rg~N~vGy~~y~ddv 98 (499)
T PRK12330 23 RMAMEDMVGACEDIDNAGYWSVECWGGATFDACIRFLNE---DP-WERLRTFRKLMPNSRLQMLLRGQNLLGYRHYEDEV 98 (499)
T ss_pred cCCHHHHHHHHHHHHhcCCCEEEecCCcchhhhhcccCC---CH-HHHHHHHHHhCCCCeEEEEEcccccCCccCcchhH
Confidence 4789999999999999999999887664322 111 11 366888888888887777644332222333322 1
Q ss_pred HHHHHHh--------hc--CCCCCHHHHHHHHHHHHHhCCCcceEeece--EEecCCCHHHHHHHHHHHHHcCCcEEeec
Q 019890 230 VEELQSA--------VR--DHRANFKQSLDVLMMAKDYVPAGTLTKTSI--MLGCGETPDQVVSTMEKVRAAGVDVMTFG 297 (334)
Q Consensus 230 v~~l~~~--------Vr--~r~~tye~sL~vL~~ak~~~p~Gl~tkTgi--MVGlGETdEE~~etl~~Lre~gvd~vtig 297 (334)
++...+. +| +.-.+.+.....++.+|+. |......| +++---|.+.+.+..+.|.++|+|.|.|-
T Consensus 99 v~~fv~~a~~~Gidi~RIfd~lndv~nl~~ai~~vk~a---g~~~~~~i~yt~sp~~t~e~~~~~a~~l~~~Gad~I~Ik 175 (499)
T PRK12330 99 VDRFVEKSAENGMDVFRVFDALNDPRNLEHAMKAVKKV---GKHAQGTICYTVSPIHTVEGFVEQAKRLLDMGADSICIK 175 (499)
T ss_pred HHHHHHHHHHcCCCEEEEEecCChHHHHHHHHHHHHHh---CCeEEEEEEEecCCCCCHHHHHHHHHHHHHcCCCEEEeC
Confidence 2211111 11 1223345555666677765 44443333 44555689999999999999999999874
No 181
>COG0119 LeuA Isopropylmalate/homocitrate/citramalate synthases [Amino acid transport and metabolism]
Probab=89.50 E-value=5 Score=40.98 Aligned_cols=133 Identities=19% Similarity=0.205 Sum_probs=87.5
Q ss_pred CCCCchhHHHHHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhCCC---Cceeee----------ecccccc
Q 019890 155 PPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPN---MLIEAL----------VAKSGLN 221 (334)
Q Consensus 155 ~~ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~P~---i~vE~L----------l~~ag~d 221 (334)
.+++.++-.++|+++.++|+++|-+.... .+.+.. +.+++|....+. ..+..+ +.+++.+
T Consensus 19 ~~~s~e~Ki~Ia~~Ld~lGv~~IE~g~p~---~s~~~~----~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ea~~~a~~~ 91 (409)
T COG0119 19 VSFSVEEKIRIAKALDDLGVDYIEAGFPV---ASPGDF----EFVRAIAEKAGLFICALIAALARAIKRDIEALLEAGVD 91 (409)
T ss_pred CcCCHHHHHHHHHHHHHcCCCEEEEeCCc---CChhhH----HHHHHHHHhcCcccchhhhhhHHhHHhhHHHHHhCCCC
Confidence 36899999999999999999999886643 122222 233333322221 111111 6677777
Q ss_pred ccccchhhHHHHHHhhc--CCCCCHHHHHHHHHHHHHhCCCcceEeeceEEecCCCHHHHHHHHHHHHHcCCcEEeec
Q 019890 222 VFAHNIETVEELQSAVR--DHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFG 297 (334)
Q Consensus 222 v~~HnlETv~~l~~~Vr--~r~~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGlGETdEE~~etl~~Lre~gvd~vtig 297 (334)
.++-.+-|++-..+... ++....+...+.++.+++. |+.+.-+..-.+.-..+.+.+.++.+.+.|++.+.+.
T Consensus 92 ~i~if~~tSd~h~~~~~~~t~~e~l~~~~~~v~ya~~~---g~~~~~~~Ed~~rt~~~~l~~~~~~~~~~ga~~i~l~ 166 (409)
T COG0119 92 RIHIFIATSDLHLRYKLKKTREEVLERAVDAVEYARDH---GLEVRFSAEDATRTDPEFLAEVVKAAIEAGADRINLP 166 (409)
T ss_pred EEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHc---CCeEEEEeeccccCCHHHHHHHHHHHHHcCCcEEEEC
Confidence 76666666543222222 1233455566778888885 6777767788888888889999999999999999885
No 182
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=89.48 E-value=7.5 Score=37.10 Aligned_cols=147 Identities=15% Similarity=0.165 Sum_probs=83.4
Q ss_pred CCCchhHHHHHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhC-CCCceeee------------------ec
Q 019890 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELK-PNMLIEAL------------------VA 216 (334)
Q Consensus 156 ~ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~-P~i~vE~L------------------l~ 216 (334)
..+.++..++++++.+.|+++|-+.+... . .. -.+.++.|.+.. ++..+-.+ ..
T Consensus 16 ~~s~e~k~~i~~~L~~~Gv~~IE~G~~~~---~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~a~ 88 (273)
T cd07941 16 SFSVEDKLRIARKLDELGVDYIEGGWPGS---N---PK-DTEFFARAKKLKLKHAKLAAFGSTRRAGVKAEEDPNLQALL 88 (273)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEecCCcC---C---HH-HHHHHHHHHHcCCCCcEEEEEecccccCCCccchHHHHHHH
Confidence 57899999999999999999998855321 1 11 123345554432 12211111 22
Q ss_pred cccccccccchhhHHH-HHHhhc-CCCCCHHHHHHHHHHHHHhCCCcceEeeceE---EecCCCHHHHHHHHHHHHHcCC
Q 019890 217 KSGLNVFAHNIETVEE-LQSAVR-DHRANFKQSLDVLMMAKDYVPAGTLTKTSIM---LGCGETPDQVVSTMEKVRAAGV 291 (334)
Q Consensus 217 ~ag~dv~~HnlETv~~-l~~~Vr-~r~~tye~sL~vL~~ak~~~p~Gl~tkTgiM---VGlGETdEE~~etl~~Lre~gv 291 (334)
++|.+.+...+-+++. +...++ ++....+...+.++.+|+. |+.+.-+.| -|.--+.+.+.+.++.+.++|+
T Consensus 89 ~~g~~~i~i~~~~sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~---G~~v~~~~~~~~d~~~~~~~~~~~~~~~~~~~g~ 165 (273)
T cd07941 89 EAGTPVVTIFGKSWDLHVTEALGTTLEENLAMIRDSVAYLKSH---GREVIFDAEHFFDGYKANPEYALATLKAAAEAGA 165 (273)
T ss_pred hCCCCEEEEEEcCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHc---CCeEEEeEEeccccCCCCHHHHHHHHHHHHhCCC
Confidence 4455544332222222 222322 1123455556777888885 676666544 2333457777899999999999
Q ss_pred cEEeeccCcCCCCCCCcccccCCHHHHHHHH
Q 019890 292 DVMTFGQYMRPSKRHMPVSEYITPEAFERYR 322 (334)
Q Consensus 292 d~vtigqYlrP~~~h~~v~~yv~P~~f~~~~ 322 (334)
+.+.+- -+. .+.+|+++..+=
T Consensus 166 ~~i~l~----DT~------G~~~P~~v~~lv 186 (273)
T cd07941 166 DWLVLC----DTN------GGTLPHEIAEIV 186 (273)
T ss_pred CEEEEe----cCC------CCCCHHHHHHHH
Confidence 987664 222 256776654443
No 183
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=88.98 E-value=16 Score=37.77 Aligned_cols=138 Identities=14% Similarity=0.152 Sum_probs=80.9
Q ss_pred CCCchhHHHHHHHHHHCCCcEEEEeeecCCCCC--CchHHHHHHHHHHHHhhCCCCceeeeecccccccccc---ch--h
Q 019890 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRDDLA--DQGSGHFAQTVRKLKELKPNMLIEALVAKSGLNVFAH---NI--E 228 (334)
Q Consensus 156 ~ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~--d~Ga~~fa~lIr~Ik~~~P~i~vE~Ll~~ag~dv~~H---nl--E 228 (334)
.++.++...+|+++.+.|+..|=++|+..-|-. --+.. =.+.++.|++..|++.+..++.-..+--|.| |+ +
T Consensus 22 ~~~t~dkl~ia~~Ld~~Gv~~IE~~ggatf~~~~~f~~e~-p~e~l~~l~~~~~~~~l~~l~r~~N~~G~~~~pddvv~~ 100 (448)
T PRK12331 22 RMTTEEMLPILEKLDNAGYHSLEMWGGATFDACLRFLNED-PWERLRKIRKAVKKTKLQMLLRGQNLLGYRNYADDVVES 100 (448)
T ss_pred ccCHHHHHHHHHHHHHcCCCEEEecCCccchhhhccCCCC-HHHHHHHHHHhCCCCEEEEEeccccccccccCchhhHHH
Confidence 578999999999999999999988876532210 00001 1467788877778776655422222222222 21 1
Q ss_pred hHHHHHHh----hc--CCCCCHHHHHHHHHHHHHhCCCcceEeeceEEecCC--CHHHHHHHHHHHHHcCCcEEeec
Q 019890 229 TVEELQSA----VR--DHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGE--TPDQVVSTMEKVRAAGVDVMTFG 297 (334)
Q Consensus 229 Tv~~l~~~----Vr--~r~~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGlGE--TdEE~~etl~~Lre~gvd~vtig 297 (334)
.+++.... +| +.-...+...+.++.+|+. |+.+...+-.-++. +.+-+.+..+.+.++|+|.|.|-
T Consensus 101 ~v~~A~~~Gvd~irif~~lnd~~n~~~~v~~ak~~---G~~v~~~i~~t~~p~~~~~~~~~~a~~l~~~Gad~I~i~ 174 (448)
T PRK12331 101 FVQKSVENGIDIIRIFDALNDVRNLETAVKATKKA---GGHAQVAISYTTSPVHTIDYFVKLAKEMQEMGADSICIK 174 (448)
T ss_pred HHHHHHHCCCCEEEEEEecCcHHHHHHHHHHHHHc---CCeEEEEEEeecCCCCCHHHHHHHHHHHHHcCCCEEEEc
Confidence 12221111 11 1112233455678888885 55543333333333 56888999999999999998874
No 184
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=88.59 E-value=11 Score=40.37 Aligned_cols=138 Identities=18% Similarity=0.184 Sum_probs=84.9
Q ss_pred CCCchhHHHHHHHHHHCCCcEEEEeeecCCCC--CCchHHHHHHHHHHHHhhCCCCceeeeeccccccccccchhh-HHH
Q 019890 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRDDL--ADQGSGHFAQTVRKLKELKPNMLIEALVAKSGLNVFAHNIET-VEE 232 (334)
Q Consensus 156 ~ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl--~d~Ga~~fa~lIr~Ik~~~P~i~vE~Ll~~ag~dv~~HnlET-v~~ 232 (334)
.++.++...+|+++.+.|+..|=++|+..-|- +--+.. =.+.++.|++..|++.+..|+.-.++--|.|..+- ++.
T Consensus 17 ~~~t~dkl~ia~~L~~~Gv~~IE~~GGatfd~~~~f~~e~-~~e~l~~l~~~~~~~~l~~L~Rg~N~~G~~~ypddvv~~ 95 (582)
T TIGR01108 17 RMRTEDMLPIAEKLDDVGYWSLEVWGGATFDACIRFLNED-PWERLRELKKALPNTPLQMLLRGQNLLGYRHYADDVVER 95 (582)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEecCCcccccccccCCCC-HHHHHHHHHHhCCCCEEEEEEccccccccccCchhhHHH
Confidence 57899999999999999999999886543221 101111 24677888887788766665332222223332211 121
Q ss_pred HHHh--------hc--CCCCCHHHHHHHHHHHHHhCCCcceEeeceEEecC--CCHHHHHHHHHHHHHcCCcEEeec
Q 019890 233 LQSA--------VR--DHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCG--ETPDQVVSTMEKVRAAGVDVMTFG 297 (334)
Q Consensus 233 l~~~--------Vr--~r~~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGlG--ETdEE~~etl~~Lre~gvd~vtig 297 (334)
..+. +| +.-...+.....++.+|+. |+.+...+-.-+. -|.+.+.+.++.+.++|+|.+.|-
T Consensus 96 ~v~~a~~~Gvd~irif~~lnd~~n~~~~i~~ak~~---G~~v~~~i~~t~~p~~~~~~~~~~~~~~~~~Gad~I~i~ 169 (582)
T TIGR01108 96 FVKKAVENGMDVFRIFDALNDPRNLQAAIQAAKKH---GAHAQGTISYTTSPVHTLETYLDLAEELLEMGVDSICIK 169 (582)
T ss_pred HHHHHHHCCCCEEEEEEecCcHHHHHHHHHHHHHc---CCEEEEEEEeccCCCCCHHHHHHHHHHHHHcCCCEEEEC
Confidence 1111 11 1122345666778888885 6666655433332 367999999999999999998774
No 185
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=87.01 E-value=19 Score=38.63 Aligned_cols=138 Identities=17% Similarity=0.159 Sum_probs=85.6
Q ss_pred CCCchhHHHHHHHHHHCCCcEEEEeeecCCC--CCCchHHHHHHHHHHHHhhCCCCceeeeeccccccccccchhh-HHH
Q 019890 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRDD--LADQGSGHFAQTVRKLKELKPNMLIEALVAKSGLNVFAHNIET-VEE 232 (334)
Q Consensus 156 ~ld~~Ep~~~A~av~~~GlkeVVLTSv~rdD--l~d~Ga~~fa~lIr~Ik~~~P~i~vE~Ll~~ag~dv~~HnlET-v~~ 232 (334)
.++.++...+|+++.+.|+..+=+.|+-.-| ++--+... .+.|+.|++..|++.+..|+....+-.|.|..+- ++.
T Consensus 23 r~~~~d~l~ia~~ld~~G~~siE~~GGatf~~~~~~~~e~p-~e~lr~l~~~~~~~~lqml~Rg~n~vg~~~ypddvv~~ 101 (593)
T PRK14040 23 RLRLDDMLPIAAKLDKVGYWSLESWGGATFDACIRFLGEDP-WERLRELKKAMPNTPQQMLLRGQNLLGYRHYADDVVER 101 (593)
T ss_pred ccCHHHHHHHHHHHHHcCCCEEEecCCcchhhhccccCCCH-HHHHHHHHHhCCCCeEEEEecCcceeccccCcHHHHHH
Confidence 4789999999999999999999887653222 11111122 4678888888888877766533333334442211 111
Q ss_pred HHHh--------hc--CCCCCHHHHHHHHHHHHHhCCCcceEeeceE--EecCCCHHHHHHHHHHHHHcCCcEEeec
Q 019890 233 LQSA--------VR--DHRANFKQSLDVLMMAKDYVPAGTLTKTSIM--LGCGETPDQVVSTMEKVRAAGVDVMTFG 297 (334)
Q Consensus 233 l~~~--------Vr--~r~~tye~sL~vL~~ak~~~p~Gl~tkTgiM--VGlGETdEE~~etl~~Lre~gvd~vtig 297 (334)
..+. +| +.-.+.+.....++.+|+. |..+...+- ..=--|.+.+.+.++.+.++|+|++.|-
T Consensus 102 ~v~~a~~~Gid~~rifd~lnd~~~~~~ai~~ak~~---G~~~~~~i~yt~~p~~~~~~~~~~a~~l~~~Gad~i~i~ 175 (593)
T PRK14040 102 FVERAVKNGMDVFRVFDAMNDPRNLETALKAVRKV---GAHAQGTLSYTTSPVHTLQTWVDLAKQLEDMGVDSLCIK 175 (593)
T ss_pred HHHHHHhcCCCEEEEeeeCCcHHHHHHHHHHHHHc---CCeEEEEEEEeeCCccCHHHHHHHHHHHHHcCCCEEEEC
Confidence 1111 11 1223456667788888886 554333222 2224467889999999999999998774
No 186
>PF06180 CbiK: Cobalt chelatase (CbiK); InterPro: IPR010388 This group, typified by Salmonella typhimurium CbiK, contains anaerobic cobalt chelatases that act in the anaerobic cobalamin biosynthesis pathway [, ]. Cobalamin (vitamin B12) can be complexed with metal via ATP-dependent reactions (aerobic pathway) (e.g., in Pseudomonas denitrificans) or via ATP-independent reactions (anaerobic pathway) (e.g., in S. typhimurium) [, ]. The corresponding cobalt chelatases are not homologous. This group belongs to the class of ATP-independent, single-subunit chelatases that also includes distantly related protoporphyrin IX (PPIX) ferrochelatase (HemH) (Class II chelatases) []. The structure of S. typhimurium CbiK shows that it has a remarkably similar topology to Bacillus subtilis ferrochelatase despite only weak sequence conservation []. Both enzymes contain a histidine residue identified as the metal ion ligand, but CbiK contains a second histidine in place of the glutamic acid residue identified as a general base in PPIX ferrochelatase []. Site-directed mutagenesis has confirmed a role for this histidine and a nearby glutamic acid in cobalt binding, modulating metal ion specificity as well as catalytic efficiency []. It should be noted that CysG and Met8p, which are multifunctional proteins associated with siroheme biosynthesis, include chelatase activity and can therefore be considered as the third class of chelatases []. As with the class II chelatases, they do not require ATP for activity. However, they are not structurally similar to HemH or CbiK, and it is likely that they have arisen by the acquisition of a chelatase function within a dehydrogenase catalytic framework [, ].; GO: 0016852 sirohydrochlorin cobaltochelatase activity; PDB: 1QGO_A 2XWP_A 2XVZ_A 2XVX_A 2XVY_A.
Probab=86.95 E-value=4.6 Score=38.86 Aligned_cols=132 Identities=14% Similarity=0.189 Sum_probs=63.2
Q ss_pred CCchhHHHHHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhCCCC-ceee---eeccccccccccchhh---
Q 019890 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNM-LIEA---LVAKSGLNVFAHNIET--- 229 (334)
Q Consensus 157 ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~P~i-~vE~---Ll~~ag~dv~~HnlET--- 229 (334)
...+.|.+..+.+.+.|+++|++++-+. +|.. .|.++.+.+++..... .+.+ ||...|.+ ++.|-
T Consensus 55 ~~i~~~~eaL~~L~~~G~~~V~VQplhi--ipG~---Ey~~l~~~v~~~~~~F~~i~~g~PLL~~~g~~---~~~~D~~~ 126 (262)
T PF06180_consen 55 IKIDSPEEALAKLADEGYTEVVVQPLHI--IPGE---EYEKLRATVEAYKHDFKKIVLGRPLLYTMGQE---NSPEDYEA 126 (262)
T ss_dssp -----HHHHHHHHHHCT--EEEEEE--S--CSSH---HHHHHHHHHHHHCCCSSEEEEE--SCSS--------SHHHHHH
T ss_pred CCcCCHHHHHHHHHHCCCCEEEEeecce--eCcH---hHHHHHHHHHHhhccCCeEEeccccccccccc---CChHHHHH
Confidence 4466677777788899999999999874 3432 3445555555443322 2211 13333333 12111
Q ss_pred -HHHHHHhhc---C----------CCCCHHHHHHHHHHHHHhCCCcceEeeceEEecCCCHHHHHHHHHHHHHcCCcEEe
Q 019890 230 -VEELQSAVR---D----------HRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMT 295 (334)
Q Consensus 230 -v~~l~~~Vr---~----------r~~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGlGETdEE~~etl~~Lre~gvd~vt 295 (334)
+..|...+- + ..+.-......|+..-+..+ ...+.||.=|..-++.+.+..|++.|+..|.
T Consensus 127 va~aL~~~~~~~~~~~a~vlmGHGt~h~an~~Y~~l~~~l~~~~-----~~~v~vgtvEG~P~~~~vi~~L~~~g~k~V~ 201 (262)
T PF06180_consen 127 VAEALAEEFPKKRKDEAVVLMGHGTPHPANAAYSALQAMLKKHG-----YPNVFVGTVEGYPSLEDVIARLKKKGIKKVH 201 (262)
T ss_dssp HHHHHHCCS-TT-TTEEEEEEE---SCHHHHHHHHHHHHHHCCT------TTEEEEETTSSSBHHHHHHHHHHHT-SEEE
T ss_pred HHHHHHHhccccCCCCEEEEEeCCCCCCccHHHHHHHHHHHhCC-----CCeEEEEEeCCCCCHHHHHHHHHhcCCCeEE
Confidence 122221111 1 11112223334443333211 1346688855555688999999999999999
Q ss_pred eccCcC
Q 019890 296 FGQYMR 301 (334)
Q Consensus 296 igqYlr 301 (334)
+-++|-
T Consensus 202 L~PlMl 207 (262)
T PF06180_consen 202 LIPLML 207 (262)
T ss_dssp EEEESS
T ss_pred EEeccc
Confidence 998874
No 187
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=86.90 E-value=15 Score=39.27 Aligned_cols=139 Identities=18% Similarity=0.188 Sum_probs=85.8
Q ss_pred CCCchhHHHHHHHHHHCCCcEEEEeeecCCCCC-CchHHHHHHHHHHHHhhCCCCceeeeeccccccccccchh-----h
Q 019890 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRDDLA-DQGSGHFAQTVRKLKELKPNMLIEALVAKSGLNVFAHNIE-----T 229 (334)
Q Consensus 156 ~ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~-d~Ga~~fa~lIr~Ik~~~P~i~vE~Ll~~ag~dv~~HnlE-----T 229 (334)
.++.++...+|+++.+.|+..+-+.|+..-|-. .+-.+.-.+.++.|++..|++.+..++.-..+--|.|.-+ .
T Consensus 22 r~~t~d~l~ia~~l~~~G~~~iE~~ggatfd~~~rfl~edp~e~l~~l~~~~~~~~l~~l~Rg~N~~gy~~ypd~vv~~~ 101 (592)
T PRK09282 22 RMRTEDMLPIAEKLDKVGFWSLEVWGGATFDVCIRYLNEDPWERLRKLKKALPNTPLQMLLRGQNLVGYRHYPDDVVEKF 101 (592)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEecCCccchhhcccCCccHHHHHHHHHHhCCCCEEEEEeccccccccccccchhhHHH
Confidence 478999999999999999999988866431110 0001122456788888778877666633322222333211 1
Q ss_pred HHHHHHh----hc--CCCCCHHHHHHHHHHHHHhCCCcceEeeceEEecC--CCHHHHHHHHHHHHHcCCcEEeec
Q 019890 230 VEELQSA----VR--DHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCG--ETPDQVVSTMEKVRAAGVDVMTFG 297 (334)
Q Consensus 230 v~~l~~~----Vr--~r~~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGlG--ETdEE~~etl~~Lre~gvd~vtig 297 (334)
+++.... +| +.-.+.+.....++.+|+. |..+...+-.-++ -|.+.+.+.++.+.++|+|.|.|-
T Consensus 102 v~~A~~~Gvd~irif~~lnd~~n~~~~i~~ak~~---G~~v~~~i~~t~~p~~t~~~~~~~a~~l~~~Gad~I~i~ 174 (592)
T PRK09282 102 VEKAAENGIDIFRIFDALNDVRNMEVAIKAAKKA---GAHVQGTISYTTSPVHTIEKYVELAKELEEMGCDSICIK 174 (592)
T ss_pred HHHHHHCCCCEEEEEEecChHHHHHHHHHHHHHc---CCEEEEEEEeccCCCCCHHHHHHHHHHHHHcCCCEEEEC
Confidence 1221111 11 1223455666777888875 6666655544333 378999999999999999998774
No 188
>PLN03228 methylthioalkylmalate synthase; Provisional
Probab=86.57 E-value=14 Score=38.93 Aligned_cols=129 Identities=13% Similarity=0.226 Sum_probs=75.1
Q ss_pred CCCchhHHHHHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhCCC---------Cceeee------------
Q 019890 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPN---------MLIEAL------------ 214 (334)
Q Consensus 156 ~ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~P~---------i~vE~L------------ 214 (334)
..+.+|-.++|+.+.++|+++|-+.. |..+... .+.+++|.+..+. ..+-.+
T Consensus 102 ~fs~eeKi~Ia~~L~~~GVd~IEvG~------Pa~s~~e-~e~i~~i~~~~~~~~~~~~~l~~~i~a~~R~~~~dId~a~ 174 (503)
T PLN03228 102 SLTPPQKLEIARQLAKLRVDIMEVGF------PGSSEEE-FEAVKTIAKTVGNEVDEETGYVPVICGIARCKKRDIEAAW 174 (503)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeC------CCCCHHH-HHHHHHHHHhcccccccccccceEEeeecccCHhhHHHHH
Confidence 58999999999999999999987754 2222222 3446666543211 111111
Q ss_pred --eccccccccccchhhHHH-HHHhhc-CCCCCHHHHHHHHHHHHHhCCCcceEeeceEEec---CCCHHHH-HHHHHHH
Q 019890 215 --VAKSGLNVFAHNIETVEE-LQSAVR-DHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC---GETPDQV-VSTMEKV 286 (334)
Q Consensus 215 --l~~ag~dv~~HnlETv~~-l~~~Vr-~r~~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGl---GETdEE~-~etl~~L 286 (334)
+.+++.+.++..+-+++. +...++ ++....++..+.++.+|+. |+. .+.+|+ +.++.|+ .+.++.+
T Consensus 175 ~a~~~a~~~~V~i~i~~Sd~h~~~kl~~s~ee~l~~~~~~V~~Ak~~---G~~---~v~f~~EDa~Rtd~efl~~~~~~a 248 (503)
T PLN03228 175 EALKYAKRPRILAFTSTSDIHMKYKLKKTKEEVIEMAVSSIRYAKSL---GFH---DIQFGCEDGGRSDKEFLCKILGEA 248 (503)
T ss_pred HhhcccCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHc---CCc---eEEeccccccccCHHHHHHHHHHH
Confidence 222344444434334433 233333 1122334444667777774 442 245565 6777775 8888999
Q ss_pred HHcCCcEEeec
Q 019890 287 RAAGVDVMTFG 297 (334)
Q Consensus 287 re~gvd~vtig 297 (334)
.++|+|.+.+-
T Consensus 249 ~~~Gad~I~l~ 259 (503)
T PLN03228 249 IKAGATSVGIA 259 (503)
T ss_pred HhcCCCEEEEe
Confidence 99999998664
No 189
>PF04481 DUF561: Protein of unknown function (DUF561); InterPro: IPR007570 Protein in this entry are of unknown function and are found in cyanobacteria and the chloroplasts of algae. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=86.04 E-value=14 Score=35.17 Aligned_cols=120 Identities=19% Similarity=0.239 Sum_probs=86.3
Q ss_pred CCCchhHHHHHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhCCCCceeee---------eccccccccccc
Q 019890 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEAL---------VAKSGLNVFAHN 226 (334)
Q Consensus 156 ~ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~P~i~vE~L---------l~~ag~dv~~Hn 226 (334)
-.|.+.+..++++....|..+|-+-. | .++|+.++.. .++.|.+- -.++|.|.+-..
T Consensus 23 NFd~~~V~~i~~AA~~ggAt~vDIAa-------d------p~LV~~~~~~-s~lPICVSaVep~~f~~aV~AGAdliEIG 88 (242)
T PF04481_consen 23 NFDAESVAAIVKAAEIGGATFVDIAA-------D------PELVKLAKSL-SNLPICVSAVEPELFVAAVKAGADLIEIG 88 (242)
T ss_pred ccCHHHHHHHHHHHHccCCceEEecC-------C------HHHHHHHHHh-CCCCeEeecCCHHHHHHHHHhCCCEEEec
Confidence 46788999999999999999975532 1 4667766654 34434332 345677764321
Q ss_pred hhhHHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCcceEeeceEEecCCCHHHHHHHHHHHHHcCCcEEee
Q 019890 227 IETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTF 296 (334)
Q Consensus 227 lETv~~l~~~Vr~r~~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGlGETdEE~~etl~~Lre~gvd~vti 296 (334)
-.+.+|..= |..+.++-|++-++.|++.|+ +.++-+ |=+--.-++=.++..+|.++|+|.+--
T Consensus 89 --NfDsFY~qG--r~f~a~eVL~Lt~~tR~LLP~-~~LsVT--VPHiL~ld~Qv~LA~~L~~~GaDiIQT 151 (242)
T PF04481_consen 89 --NFDSFYAQG--RRFSAEEVLALTRETRSLLPD-ITLSVT--VPHILPLDQQVQLAEDLVKAGADIIQT 151 (242)
T ss_pred --chHHHHhcC--CeecHHHHHHHHHHHHHhCCC-CceEEe--cCccccHHHHHHHHHHHHHhCCcEEEc
Confidence 147889874 478999999999999999998 655443 444556677788999999999998754
No 190
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=85.83 E-value=17 Score=37.86 Aligned_cols=139 Identities=14% Similarity=0.164 Sum_probs=82.5
Q ss_pred CCCchhHHHHHHHHHHCCCcEEEEeeecCCCC-CCchHHHHHHHHHHHHhhCCCCceeeeeccccccccccchhh-----
Q 019890 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRDDL-ADQGSGHFAQTVRKLKELKPNMLIEALVAKSGLNVFAHNIET----- 229 (334)
Q Consensus 156 ~ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl-~d~Ga~~fa~lIr~Ik~~~P~i~vE~Ll~~ag~dv~~HnlET----- 229 (334)
.++.++...+|+++.+.|+..|=+.|+..-|- ..+-.+.=.+.++.|++..|++.+..++....+--|.|..+-
T Consensus 21 ~~~t~dkl~Ia~~Ld~~Gv~~IE~~ggatfd~~~~Fl~e~p~e~l~~l~~~~~~~~l~~l~r~~N~~G~~~~~dDvv~~f 100 (467)
T PRK14041 21 RMRTEDMLPALEAFDRMGFYSMEVWGGATFDVCVRFLNENPWERLKEIRKRLKNTKIQMLLRGQNLVGYRHYADDVVELF 100 (467)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEecCCccchhhhcccCCCHHHHHHHHHHhCCCCEEEEEeccccccCcccccchhhHHH
Confidence 47899999999999999999998865432110 000000124778888887788776665332222122222111
Q ss_pred HHHHH----Hhhc--CCCCCHHHHHHHHHHHHHhCCCcceEeeceEEecC--CCHHHHHHHHHHHHHcCCcEEeec
Q 019890 230 VEELQ----SAVR--DHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCG--ETPDQVVSTMEKVRAAGVDVMTFG 297 (334)
Q Consensus 230 v~~l~----~~Vr--~r~~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGlG--ETdEE~~etl~~Lre~gvd~vtig 297 (334)
++... ..+| +.-...+.....++.+|+. |..+...+-.-++ -|.+.+.+..+.+.++|+|.|.|-
T Consensus 101 v~~A~~~Gvd~irif~~lnd~~n~~~~i~~ak~~---G~~v~~~i~~t~~p~~t~e~~~~~a~~l~~~Gad~I~i~ 173 (467)
T PRK14041 101 VKKVAEYGLDIIRIFDALNDIRNLEKSIEVAKKH---GAHVQGAISYTVSPVHTLEYYLEFARELVDMGVDSICIK 173 (467)
T ss_pred HHHHHHCCcCEEEEEEeCCHHHHHHHHHHHHHHC---CCEEEEEEEeccCCCCCHHHHHHHHHHHHHcCCCEEEEC
Confidence 11111 1111 1122344555677788875 5666655544444 377889999999999999998774
No 191
>PRK12344 putative alpha-isopropylmalate/homocitrate synthase family transferase; Provisional
Probab=85.58 E-value=31 Score=36.37 Aligned_cols=145 Identities=17% Similarity=0.225 Sum_probs=82.1
Q ss_pred CCCCchhHHHHHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhC-CCCceeee------------------e
Q 019890 155 PPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELK-PNMLIEAL------------------V 215 (334)
Q Consensus 155 ~~ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~-P~i~vE~L------------------l 215 (334)
.+++.++-.++|+.+.+.|+++|-+...-. .... .+.++.|.+.. .+..+-.+ +
T Consensus 22 ~~~s~e~Kl~ia~~L~~~Gvd~IEvG~p~a------s~~d-~~~~~~i~~~~l~~~~i~~~~~~~~~~i~~~~d~~~e~~ 94 (524)
T PRK12344 22 ISFSVEDKLRIARKLDELGVDYIEGGWPGS------NPKD-TEFFKRAKELKLKHAKLAAFGSTRRAGVSAEEDPNLQAL 94 (524)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEcCCcC------ChhH-HHHHHHHHHhCCCCcEEEEEeeccccCCCcccHHHHHHH
Confidence 368999999999999999999998844210 1111 13345554321 12222221 3
Q ss_pred ccccccccccchhhHHH-HHHhhcCCCCCHHHHH----HHHHHHHHhCCCcceEeeceEE---ecCCCHHHHHHHHHHHH
Q 019890 216 AKSGLNVFAHNIETVEE-LQSAVRDHRANFKQSL----DVLMMAKDYVPAGTLTKTSIML---GCGETPDQVVSTMEKVR 287 (334)
Q Consensus 216 ~~ag~dv~~HnlETv~~-l~~~Vr~r~~tye~sL----~vL~~ak~~~p~Gl~tkTgiMV---GlGETdEE~~etl~~Lr 287 (334)
.++|.++++..+-+++- +...+ +.+.++.+ +.++.+|+. |+.+.-+.+- |.-.+.+-+.+.++.+.
T Consensus 95 ~~~g~~~i~i~~~~Sd~h~~~~l---~~s~~e~l~~~~~~v~~ak~~---G~~v~~~~e~~~Da~r~d~~~l~~~~~~~~ 168 (524)
T PRK12344 95 LDAGTPVVTIFGKSWDLHVTEAL---RTTLEENLAMIRDSVAYLKAH---GREVIFDAEHFFDGYKANPEYALATLKAAA 168 (524)
T ss_pred HhCCCCEEEEEECCCHHHHHHHc---CCCHHHHHHHHHHHHHHHHHc---CCeEEEccccccccccCCHHHHHHHHHHHH
Confidence 34455554444434432 22222 23344444 666677775 5555444441 22233555678999999
Q ss_pred HcCCcEEeeccCcCCCCCCCcccccCCHHHHHHHH
Q 019890 288 AAGVDVMTFGQYMRPSKRHMPVSEYITPEAFERYR 322 (334)
Q Consensus 288 e~gvd~vtigqYlrP~~~h~~v~~yv~P~~f~~~~ 322 (334)
+.|++.+.+- -+ ..+.+|+++..+=
T Consensus 169 ~~Gad~i~l~----DT------vG~~~P~~v~~li 193 (524)
T PRK12344 169 EAGADWVVLC----DT------NGGTLPHEVAEIV 193 (524)
T ss_pred hCCCCeEEEc----cC------CCCcCHHHHHHHH
Confidence 9999998764 12 2578887765443
No 192
>TIGR03279 cyano_FeS_chp putative FeS-containing Cyanobacterial-specific oxidoreductase. Members of this protein family are predicted FeS-containing oxidoreductases of unknown function, apparently restricted to and universal across the Cyanobacteria. The high trusted cutoff score for this model, 700 bits, excludes homologs from other lineages. This exclusion seems justified because a significant number of sequence positions are simultaneously unique to and invariant across the Cyanobacteria, suggesting a specialized, conserved function, perhaps related to photosynthesis. A distantly related protein family, TIGR03278, in universal in and restricted to archaeal methanogens, and may be linked to methanogenesis.
Probab=85.04 E-value=13 Score=38.31 Aligned_cols=55 Identities=9% Similarity=0.090 Sum_probs=40.9
Q ss_pred HHHHHhhcCCCCCHHHHHHHHHHHHHhCCCcceEeeceEEecCCCH-HHHHHHHHHHHHc
Q 019890 231 EELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETP-DQVVSTMEKVRAA 289 (334)
Q Consensus 231 ~~l~~~Vr~r~~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGlGETd-EE~~etl~~Lre~ 289 (334)
|.+..+|- ....-.+.++.|+++.+. |+.+-+.+.+==|=.| +++.+|+.+|.+.
T Consensus 151 p~lR~~ll-~n~~a~~il~~l~~l~~~---~I~~h~qiVlcPGiNDg~~L~~Ti~dL~~~ 206 (433)
T TIGR03279 151 PSLRARLL-KNPRAGLILEQLKWFQER---RLQLHAQVVVCPGINDGKHLERTLRDLAQF 206 (433)
T ss_pred HHHHHHHh-CCCCHHHHHHHHHHHHHc---CCeEEEEEEEcCCcCCHHHHHHHHHHHHhh
Confidence 66665554 244678899999999885 6777766655336666 6899999999988
No 193
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=84.26 E-value=48 Score=34.64 Aligned_cols=150 Identities=17% Similarity=0.168 Sum_probs=93.2
Q ss_pred eecCCCCCCCCCcccCCCCCCCCCCchhHHHHHHHHHHCCCcEEEEeeecCCC-----CCCchHHHHHHHHHHHHhhCCC
Q 019890 134 ILGDTCTRGCRFCNVKTSRAPPPPDPDEPTNVAEAIASWGLDYVVITSVDRDD-----LADQGSGHFAQTVRKLKELKPN 208 (334)
Q Consensus 134 ~igdgCtr~C~FC~V~~~r~p~~ld~~Ep~~~A~av~~~GlkeVVLTSv~rdD-----l~d~Ga~~fa~lIr~Ik~~~P~ 208 (334)
.|.|+.=|+=..+-+. -.+..++...+|+++.+.|+..+-+.|+..-| +.. .- .+-++++++..|+
T Consensus 14 ~i~DtTlRDg~QSl~a-----tr~~t~d~l~ia~~ld~~G~~siE~wGGAtfd~~~rfl~e---dp-werlr~~r~~~~n 84 (468)
T PRK12581 14 AITETVLRDGHQSLMA-----TRLSIEDMLPVLTILDKIGYYSLECWGGATFDACIRFLNE---DP-WERLRTLKKGLPN 84 (468)
T ss_pred EEEECCccchhhhccc-----cCCCHHHHHHHHHHHHhcCCCEEEecCCcchhhhhcccCC---CH-HHHHHHHHHhCCC
Confidence 3445544544433332 14789999999999999999999998875422 111 11 3667888888899
Q ss_pred Cceeeeeccccccccccchh-hHHHHHHhh--------c--CCCCCHHHHHHHHHHHHHhCCCcceEeeceEEec----C
Q 019890 209 MLIEALVAKSGLNVFAHNIE-TVEELQSAV--------R--DHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC----G 273 (334)
Q Consensus 209 i~vE~Ll~~ag~dv~~HnlE-Tv~~l~~~V--------r--~r~~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGl----G 273 (334)
+.+..|+.-..+=-|.|.-+ .++.+.+.. | +.-...+.....++.+|+. |..+. +++++ -
T Consensus 85 t~lqmLlRG~n~vgy~~ypddvv~~fv~~a~~~Gidi~Rifd~lnd~~n~~~ai~~ak~~---G~~~~--~~i~yt~sp~ 159 (468)
T PRK12581 85 TRLQMLLRGQNLLGYRHYADDIVDKFISLSAQNGIDVFRIFDALNDPRNIQQALRAVKKT---GKEAQ--LCIAYTTSPV 159 (468)
T ss_pred CceeeeeccccccCccCCcchHHHHHHHHHHHCCCCEEEEcccCCCHHHHHHHHHHHHHc---CCEEE--EEEEEEeCCc
Confidence 88887755333223444222 122222221 1 1223456666777888875 55443 45555 3
Q ss_pred CCHHHHHHHHHHHHHcCCcEEeec
Q 019890 274 ETPDQVVSTMEKVRAAGVDVMTFG 297 (334)
Q Consensus 274 ETdEE~~etl~~Lre~gvd~vtig 297 (334)
-|.+-+.+..+.+.++|+|.|.|-
T Consensus 160 ~t~~y~~~~a~~l~~~Gad~I~Ik 183 (468)
T PRK12581 160 HTLNYYLSLVKELVEMGADSICIK 183 (468)
T ss_pred CcHHHHHHHHHHHHHcCCCEEEEC
Confidence 355668899999999999998874
No 194
>COG4822 CbiK Cobalamin biosynthesis protein CbiK, Co2+ chelatase [Coenzyme metabolism]
Probab=83.69 E-value=9.8 Score=36.13 Aligned_cols=156 Identities=13% Similarity=0.203 Sum_probs=91.1
Q ss_pred CCCCchhHHHHHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhCCCC-ceeeeeccccccccccc-----hh
Q 019890 155 PPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNM-LIEALVAKSGLNVFAHN-----IE 228 (334)
Q Consensus 155 ~~ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~P~i-~vE~Ll~~ag~dv~~Hn-----lE 228 (334)
.-.+.+.|.+....+++.|+++|.+++-+. .|.+ .+..+++.+.+..++. ++.+ ..|=.+-+| +|
T Consensus 55 dgi~~dTP~~aL~klk~~gy~eviiQ~lhi--IpG~---EyEklvr~V~~~~~dF~~lki----g~PlLy~k~DYe~~v~ 125 (265)
T COG4822 55 DGIDFDTPIQALNKLKDQGYEEVIIQPLHI--IPGI---EYEKLVREVNKYSNDFKRLKI----GRPLLYYKNDYEICVE 125 (265)
T ss_pred cCcccCCHHHHHHHHHHccchheeeeeeee--cCch---HHHHHHHHHHHHhhhhheeec----CCceeechhhHHHHHH
Confidence 357899999999999999999999999774 3433 3556666665544432 1100 011112222 33
Q ss_pred hHHHHHHhhcC----------CCCCHHHHHHHHHHHHHhCCCcceEeeceEEecCCCHHHHHHHHHHHHHcCCcEEeecc
Q 019890 229 TVEELQSAVRD----------HRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQ 298 (334)
Q Consensus 229 Tv~~l~~~Vr~----------r~~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGlGETdEE~~etl~~Lre~gvd~vtigq 298 (334)
.....++..+. ..+....+...|+..-.. .|+ +.+-|+--|..-++...++.|++.++..|++-+
T Consensus 126 aik~~~ppl~k~e~~vlmgHGt~h~s~~~YacLd~~~~~--~~f---~~v~v~~ve~yP~~d~vi~~l~~~~~~~v~L~P 200 (265)
T COG4822 126 AIKDQIPPLNKDEILVLMGHGTDHHSNAAYACLDHVLDE--YGF---DNVFVAAVEGYPLVDTVIEYLRKNGIKEVHLIP 200 (265)
T ss_pred HHHHhcCCcCcCeEEEEEecCCCccHHHHHHHHHHHHHh--cCC---CceEEEEecCCCcHHHHHHHHHHcCCceEEEee
Confidence 33333332210 123333444555555432 232 455677778888899999999999999999998
Q ss_pred CcCCCCCCCcccccCCHHHHHHHHHHHH
Q 019890 299 YMRPSKRHMPVSEYITPEAFERYRALGM 326 (334)
Q Consensus 299 YlrP~~~h~~v~~yv~P~~f~~~~~~a~ 326 (334)
+|-=--.|.... +. -+.-+.|+++-.
T Consensus 201 lMlvAG~Ha~nD-Ma-sddedswk~il~ 226 (265)
T COG4822 201 LMLVAGDHAKND-MA-SDDEDSWKNILE 226 (265)
T ss_pred eEEeechhhhhh-hc-ccchHHHHHHHH
Confidence 875444544332 22 222356665544
No 195
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=83.12 E-value=26 Score=37.59 Aligned_cols=155 Identities=13% Similarity=0.111 Sum_probs=95.4
Q ss_pred eecCCCCCCCCCcccCCCCCCCCCCchhHHHHHHHHHHCCCcEEEEeeecCCCCCCch--HHHHHHHHHHHHhhCCCCce
Q 019890 134 ILGDTCTRGCRFCNVKTSRAPPPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQG--SGHFAQTVRKLKELKPNMLI 211 (334)
Q Consensus 134 ~igdgCtr~C~FC~V~~~r~p~~ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~G--a~~fa~lIr~Ik~~~P~i~v 211 (334)
.|.|+.=|+=..+.+.+ .+..++...+|+++.+.|+..+-+.|+..-|- -++ .+.=.+-++.+++..|++.+
T Consensus 5 ~i~DttlRDg~QSl~at-----r~~t~d~~~ia~~~d~~g~~siE~~gGatfd~-~~rfl~edpwerl~~~r~~~pnt~l 78 (596)
T PRK14042 5 FITDVTLRDAHQCLIAT-----RMRTEDMLPICNKMDDVGFWAMEVWGGATFDA-CLRFLKEDPWSRLRQLRQALPNTQL 78 (596)
T ss_pred EEEECCcchhhhhhhhc-----CCCHHHHHHHHHHHHhcCCCEEEeeCCcccce-eecccCCCHHHHHHHHHHhCCCCce
Confidence 34455555555554432 47889999999999999999999988764221 111 01113677888888899888
Q ss_pred eeeeccccccccccchh-hHHHHHHhhc----------CCCCCHHHHHHHHHHHHHhCCCcceEeec--eEEecCCCHHH
Q 019890 212 EALVAKSGLNVFAHNIE-TVEELQSAVR----------DHRANFKQSLDVLMMAKDYVPAGTLTKTS--IMLGCGETPDQ 278 (334)
Q Consensus 212 E~Ll~~ag~dv~~HnlE-Tv~~l~~~Vr----------~r~~tye~sL~vL~~ak~~~p~Gl~tkTg--iMVGlGETdEE 278 (334)
..|+.-.++=-|.|.-+ .++...+... |.--+.+.....++.+|+. |..+-.. .|..--=|.+.
T Consensus 79 qmL~Rg~N~vGy~~~~d~vv~~~v~~a~~~Gidv~Rifd~lnd~~n~~~~i~~~k~~---G~~~~~~i~yt~sp~~t~e~ 155 (596)
T PRK14042 79 SMLLRGQNLLGYRNYADDVVRAFVKLAVNNGVDVFRVFDALNDARNLKVAIDAIKSH---KKHAQGAICYTTSPVHTLDN 155 (596)
T ss_pred EEEeccccccccccCChHHHHHHHHHHHHcCCCEEEEcccCcchHHHHHHHHHHHHc---CCEEEEEEEecCCCCCCHHH
Confidence 87754443333333322 1222222111 1122344455566777775 4544444 33344789999
Q ss_pred HHHHHHHHHHcCCcEEeec
Q 019890 279 VVSTMEKVRAAGVDVMTFG 297 (334)
Q Consensus 279 ~~etl~~Lre~gvd~vtig 297 (334)
+.+..+.|.++|+|.|.|-
T Consensus 156 ~~~~ak~l~~~Gad~I~Ik 174 (596)
T PRK14042 156 FLELGKKLAEMGCDSIAIK 174 (596)
T ss_pred HHHHHHHHHHcCCCEEEeC
Confidence 9999999999999988874
No 196
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=82.84 E-value=8.1 Score=36.64 Aligned_cols=52 Identities=12% Similarity=0.203 Sum_probs=39.4
Q ss_pred CCHHHHHHHHHHHHHhCCCcceEeeceEEec-CCCHHHHHHHHHHHHHcCCcEEeec
Q 019890 242 ANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC-GETPDQVVSTMEKVRAAGVDVMTFG 297 (334)
Q Consensus 242 ~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGl-GETdEE~~etl~~Lre~gvd~vtig 297 (334)
-+.+++.++++.+.+...+ +.-+|+|. +.+-+|.++..+..+++|+|.+-+.
T Consensus 50 lt~~Er~~l~~~~~~~~~~----~~~vi~gv~~~~~~~~~~~a~~a~~~G~d~v~~~ 102 (284)
T cd00950 50 LSDEEHEAVIEAVVEAVNG----RVPVIAGTGSNNTAEAIELTKRAEKAGADAALVV 102 (284)
T ss_pred CCHHHHHHHHHHHHHHhCC----CCcEEeccCCccHHHHHHHHHHHHHcCCCEEEEc
Confidence 4567778888877776432 35688999 5688899999999999999966654
No 197
>cd04823 ALAD_PBGS_aspartate_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. All of PBGS_aspartate_rich contain an aspartate rich metal binding site with the general sequence DXALDX(Y/F)X3G(H/Q)DG. They also contain an allosteric magnesiu
Probab=82.47 E-value=21 Score=35.47 Aligned_cols=124 Identities=24% Similarity=0.264 Sum_probs=76.5
Q ss_pred CCCCchhHHHHHHHHHHCCCcEEEEeeecCCCCCCc-hH------HHHHHHHHHHHhhCCCCcee--ee---eccccccc
Q 019890 155 PPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQ-GS------GHFAQTVRKLKELKPNMLIE--AL---VAKSGLNV 222 (334)
Q Consensus 155 ~~ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~-Ga------~~fa~lIr~Ik~~~P~i~vE--~L---l~~ag~dv 222 (334)
...+.+.+.++++.+.+.|++-|.|=|+..++..|. |. .-+.+.|+.||+.+|++.|= +. ..+.|=+-
T Consensus 49 ~r~s~d~l~~~v~~~~~~Gi~~v~lFgv~~~~~KD~~gs~A~~~~g~v~~air~iK~~~p~l~vi~DVclc~YT~hGHcG 128 (320)
T cd04823 49 FRLSIDELLKEAEEAVDLGIPAVALFPVTPPELKSEDGSEAYNPDNLVCRAIRAIKEAFPELGIITDVALDPYTSHGHDG 128 (320)
T ss_pred eeeCHHHHHHHHHHHHHcCCCEEEEecCCCcccCCcccccccCCCChHHHHHHHHHHhCCCcEEEEeeeccCCCCCCcce
Confidence 356889999999999999999999999832222221 11 24678999999999986441 11 11111111
Q ss_pred c-----ccchhhHHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCcceEeeceEEecCCCHHHHHHHHHHHHHcCCcEEeec
Q 019890 223 F-----AHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFG 297 (334)
Q Consensus 223 ~-----~HnlETv~~l~~~Vr~r~~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGlGETdEE~~etl~~Lre~gvd~vtig 297 (334)
+ --|-+|++.|-+. -+..|+. --+ ++--|++|=|- +...=+.|.+.|+..+.|-
T Consensus 129 il~~~~idND~Tl~~L~~~-------------Avs~A~A-GAD-iVAPSdMMDGr------V~aIR~aLd~~g~~~v~Im 187 (320)
T cd04823 129 IVRDGGILNDETVEVLCKQ-------------ALVQAEA-GAD-IVAPSDMMDGR------IGAIREALDAEGFTNVSIL 187 (320)
T ss_pred eccCCcCcCHHHHHHHHHH-------------HHHHHHh-CCC-EEEcccchhhH------HHHHHHHHHHCCCCCCcee
Confidence 1 1234454444322 1223333 123 66688888553 5555567888999888888
Q ss_pred cC
Q 019890 298 QY 299 (334)
Q Consensus 298 qY 299 (334)
.|
T Consensus 188 SY 189 (320)
T cd04823 188 SY 189 (320)
T ss_pred ec
Confidence 77
No 198
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=82.05 E-value=23 Score=31.70 Aligned_cols=104 Identities=22% Similarity=0.357 Sum_probs=68.8
Q ss_pred CCchhHHHHHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhCCCCceee---e-------eccccccccccc
Q 019890 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEA---L-------VAKSGLNVFAHN 226 (334)
Q Consensus 157 ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~P~i~vE~---L-------l~~ag~dv~~Hn 226 (334)
.++++....++++.+.|++-|.++.-+. ...+.|+.|++..|++.+-. + ..++|.+.+.
T Consensus 13 ~~~~~~~~~~~~l~~~G~~~vev~~~~~---------~~~~~i~~l~~~~~~~~iGag~v~~~~~~~~a~~~Ga~~i~-- 81 (190)
T cd00452 13 DDAEDALALAEALIEGGIRAIEITLRTP---------GALEAIRALRKEFPEALIGAGTVLTPEQADAAIAAGAQFIV-- 81 (190)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEeCCCh---------hHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHcCCCEEE--
Confidence 4688999999999999999999975331 13458888988888643321 1 3445555442
Q ss_pred hhhHHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCcceEeeceEEecCCCHHHHHHHHHHHHHcCCcEEeeccC
Q 019890 227 IETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQY 299 (334)
Q Consensus 227 lETv~~l~~~Vr~r~~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGlGETdEE~~etl~~Lre~gvd~vtigqY 299 (334)
- +..+ .++++.+++. |+ .+|+|.- |.+|..+.+ +.|+|++.+|+.
T Consensus 82 -----------~-p~~~----~~~~~~~~~~---~~----~~i~gv~-t~~e~~~A~----~~Gad~i~~~p~ 126 (190)
T cd00452 82 -----------S-PGLD----PEVVKAANRA---GI----PLLPGVA-TPTEIMQAL----ELGADIVKLFPA 126 (190)
T ss_pred -----------c-CCCC----HHHHHHHHHc---CC----cEECCcC-CHHHHHHHH----HCCCCEEEEcCC
Confidence 1 1222 3566666653 22 4577877 888876665 589999999853
No 199
>PLN02321 2-isopropylmalate synthase
Probab=81.96 E-value=48 Score=35.90 Aligned_cols=141 Identities=14% Similarity=0.206 Sum_probs=75.4
Q ss_pred CCCCchhHHHHHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhC-C----CCcee-ee------------ec
Q 019890 155 PPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELK-P----NMLIE-AL------------VA 216 (334)
Q Consensus 155 ~~ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~-P----~i~vE-~L------------l~ 216 (334)
.+++.+|-.++|+.+.++|+++|-+.+-- ......+. ++.|.+.. + +..+. +. ..
T Consensus 103 ~~~s~eeKl~Ia~~L~~lGVd~IEvGfP~---~Sp~D~e~----vr~i~~~~~~~v~~~~~v~~i~a~~ra~~~dId~A~ 175 (632)
T PLN02321 103 ATLTSKEKLDIARQLAKLGVDIIEAGFPI---ASPDDLEA----VKTIAKEVGNEVDEDGYVPVICGLSRCNKKDIDAAW 175 (632)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEeCcC---CCccHHHH----HHHHHHhcccCCCccccceeeeeehhccHHhHHHHH
Confidence 36899999999999999999999886511 11112222 44443321 1 11111 11 11
Q ss_pred cccc----cccccchhhHHH-HHHhhcCCCCCHHHHHH----HHHHHHHhCCCcceEeeceEEec---CCC-HHHHHHHH
Q 019890 217 KSGL----NVFAHNIETVEE-LQSAVRDHRANFKQSLD----VLMMAKDYVPAGTLTKTSIMLGC---GET-PDQVVSTM 283 (334)
Q Consensus 217 ~ag~----dv~~HnlETv~~-l~~~Vr~r~~tye~sL~----vL~~ak~~~p~Gl~tkTgiMVGl---GET-dEE~~etl 283 (334)
+++. ..++-.+-+++. +...+ +.+.++.++ .++.+|+. |.. .+.+|. |.+ .+.+.+.+
T Consensus 176 ~al~~a~~~~I~i~~stSd~h~~~~l---~~t~ee~l~~~~~~V~~Ak~~---G~~---~v~fs~EDa~rtd~d~l~~~~ 246 (632)
T PLN02321 176 EAVKHAKRPRIHTFIATSEIHMEHKL---RKTPDEVVEIARDMVKYARSL---GCE---DVEFSPEDAGRSDPEFLYRIL 246 (632)
T ss_pred HHhcCCCCCEEEEEEcCCHHHHHHHh---CCCHHHHHHHHHHHHHHHHHc---CCc---eEEEecccCCCCCHHHHHHHH
Confidence 2211 122222333333 22333 355666665 55556654 331 233333 334 45566889
Q ss_pred HHHHHcCCcEEeeccCcCCCCCCCcccccCCHHHHHHH
Q 019890 284 EKVRAAGVDVMTFGQYMRPSKRHMPVSEYITPEAFERY 321 (334)
Q Consensus 284 ~~Lre~gvd~vtigqYlrP~~~h~~v~~yv~P~~f~~~ 321 (334)
+.+.++|++.+.+. -+ ..+.+|+++..+
T Consensus 247 ~~a~~aGa~~I~L~----DT------vG~~~P~~v~~l 274 (632)
T PLN02321 247 GEVIKAGATTLNIP----DT------VGYTLPSEFGQL 274 (632)
T ss_pred HHHHHcCCCEEEec----cc------ccCCCHHHHHHH
Confidence 99999999998774 12 246677665443
No 200
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=81.26 E-value=17 Score=33.89 Aligned_cols=137 Identities=15% Similarity=0.231 Sum_probs=77.5
Q ss_pred CCchhHHHHHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhCCC--Cceeee----------eccccccccc
Q 019890 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPN--MLIEAL----------VAKSGLNVFA 224 (334)
Q Consensus 157 ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~P~--i~vE~L----------l~~ag~dv~~ 224 (334)
.|...+.++.+.+.+.|++++-+==-|.--.|.... =.++|++|++..++ +.+++. +.++|.|.+.
T Consensus 9 ad~~~l~~~i~~l~~~g~~~lH~DvmDG~Fvpn~tf--g~~~i~~i~~~~~~~~~dvHLMv~~p~~~i~~~~~~gad~i~ 86 (220)
T PRK08883 9 ADFARLGEDVEKVLAAGADVVHFDVMDNHYVPNLTF--GAPICKALRDYGITAPIDVHLMVKPVDRIIPDFAKAGASMIT 86 (220)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEEecccCcccCcccc--CHHHHHHHHHhCCCCCEEEEeccCCHHHHHHHHHHhCCCEEE
Confidence 466788889999999999988772211111121110 04678888764223 445554 6778888776
Q ss_pred cchhhH---HHHHHhhcC----------------------------------C---CC-CHHHHHHHHHHHHHhCCCcce
Q 019890 225 HNIETV---EELQSAVRD----------------------------------H---RA-NFKQSLDVLMMAKDYVPAGTL 263 (334)
Q Consensus 225 HnlETv---~~l~~~Vr~----------------------------------r---~~-tye~sL~vL~~ak~~~p~Gl~ 263 (334)
-+.|+. .++.+.+|. + +. --...++.++++++..++ --
T Consensus 87 ~H~Ea~~~~~~~l~~ik~~g~k~GlalnP~Tp~~~i~~~l~~~D~vlvMtV~PGfgGq~fi~~~lekI~~l~~~~~~-~~ 165 (220)
T PRK08883 87 FHVEASEHVDRTLQLIKEHGCQAGVVLNPATPLHHLEYIMDKVDLILLMSVNPGFGGQSFIPHTLDKLRAVRKMIDE-SG 165 (220)
T ss_pred EcccCcccHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhCCeEEEEEecCCCCCceecHhHHHHHHHHHHHHHh-cC
Confidence 666632 233333332 1 11 123455666666665332 11
Q ss_pred EeeceEEecCCCHHHHHHHHHHHHHcCCcEEeeccCc
Q 019890 264 TKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYM 300 (334)
Q Consensus 264 tkTgiMVGlGETdEE~~etl~~Lre~gvd~vtigqYl 300 (334)
...-+.+.-|=+. +++..+.+.|+|.+-+|.++
T Consensus 166 ~~~~I~vdGGI~~----eni~~l~~aGAd~vVvGSaI 198 (220)
T PRK08883 166 RDIRLEIDGGVKV----DNIREIAEAGADMFVAGSAI 198 (220)
T ss_pred CCeeEEEECCCCH----HHHHHHHHcCCCEEEEeHHH
Confidence 1233445556663 36677888999998888665
No 201
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=80.82 E-value=16 Score=34.48 Aligned_cols=54 Identities=17% Similarity=0.195 Sum_probs=39.6
Q ss_pred CCHHHHHHHHHHHHHhCCCcceEeeceEEe-----cC-CCHHHHHHHHHHHHHcCCcEEeec
Q 019890 242 ANFKQSLDVLMMAKDYVPAGTLTKTSIMLG-----CG-ETPDQVVSTMEKVRAAGVDVMTFG 297 (334)
Q Consensus 242 ~tye~sL~vL~~ak~~~p~Gl~tkTgiMVG-----lG-ETdEE~~etl~~Lre~gvd~vtig 297 (334)
-+.++..+.|+.+++...+ + ...-||.+ .| +..+|.++-.+...+.|.|.+.+-
T Consensus 121 ~~~ee~~~ki~aa~~a~~~-~-~~~~IiARTDa~~~~~~~~~eai~Ra~ay~~AGAD~v~v~ 180 (243)
T cd00377 121 VPIEEFVAKIKAARDARDD-L-PDFVIIARTDALLAGEEGLDEAIERAKAYAEAGADGIFVE 180 (243)
T ss_pred cCHHHHHHHHHHHHHHHhc-c-CCeEEEEEcCchhccCCCHHHHHHHHHHHHHcCCCEEEeC
Confidence 3677778888877776543 2 23334444 45 689999999999999999999885
No 202
>COG0113 HemB Delta-aminolevulinic acid dehydratase [Coenzyme metabolism]
Probab=80.60 E-value=21 Score=35.41 Aligned_cols=133 Identities=23% Similarity=0.288 Sum_probs=81.5
Q ss_pred ccCCCCCCCCCCchhHHHHHHHHHHCCCcEEEEeeecCCCCCCc-hH------HHHHHHHHHHHhhCCCCce---eee--
Q 019890 147 NVKTSRAPPPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQ-GS------GHFAQTVRKLKELKPNMLI---EAL-- 214 (334)
Q Consensus 147 ~V~~~r~p~~ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~-Ga------~~fa~lIr~Ik~~~P~i~v---E~L-- 214 (334)
.|++-.+-...+.+++.+.++.+..+|++-|.|=|+-.+.+.|. |. .-+.+.|++||+..|++.| -+|
T Consensus 48 ~I~SMPgv~r~s~d~l~~~~~~~~~lGi~av~LFgvp~~~~Kd~~gs~A~~~~givqravr~ik~~~p~l~iitDvcLce 127 (330)
T COG0113 48 EIPSMPGVYRYSLDRLVEEAEELVDLGIPAVILFGVPDDSKKDETGSEAYDPDGIVQRAVRAIKEAFPELVVITDVCLCE 127 (330)
T ss_pred ccCCCCCceeccHHHHHHHHHHHHhcCCCEEEEeCCCcccccCcccccccCCCChHHHHHHHHHHhCCCeEEEeeecccC
Confidence 35543333467899999999999999999999999864333331 21 2467899999999997533 122
Q ss_pred eccccccc------cccchhhHHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCcceEeeceEEecCCCHHHHHHHHHHHHH
Q 019890 215 VAKSGLNV------FAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRA 288 (334)
Q Consensus 215 l~~ag~dv------~~HnlETv~~l~~~Vr~r~~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGlGETdEE~~etl~~Lre 288 (334)
..+-|=+- +--|-+|++.+-+. -+-+|+. --+ ++--|++|=|. +...=+-|.+
T Consensus 128 yT~HGHcGil~~~~~V~ND~Tle~l~k~-------------Avs~AeA-GAd-ivAPSdMMDGr------V~aIR~aLd~ 186 (330)
T COG0113 128 YTDHGHCGILDDGGYVDNDETLEILAKQ-------------AVSQAEA-GAD-IVAPSDMMDGR------VGAIREALDE 186 (330)
T ss_pred CcCCCccccccCCCeecchHHHHHHHHH-------------HHHHHHc-CCC-eecccccccch------HHHHHHHHHH
Confidence 22222211 22244455444321 1223332 223 66788999886 3334445777
Q ss_pred cCCcEEeeccCc
Q 019890 289 AGVDVMTFGQYM 300 (334)
Q Consensus 289 ~gvd~vtigqYl 300 (334)
.|+..+.|-.|.
T Consensus 187 ag~~~v~IMsYs 198 (330)
T COG0113 187 AGFIDVPIMSYS 198 (330)
T ss_pred cCCCcceeeehh
Confidence 899999998774
No 203
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=80.22 E-value=12 Score=35.92 Aligned_cols=51 Identities=6% Similarity=0.121 Sum_probs=37.4
Q ss_pred CCHHHHHHHHHHHHHhCCCcceEeeceEEec-CCCHHHHHHHHHHHHHcCCcEEee
Q 019890 242 ANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC-GETPDQVVSTMEKVRAAGVDVMTF 296 (334)
Q Consensus 242 ~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGl-GETdEE~~etl~~Lre~gvd~vti 296 (334)
-+.+++.++++.+.+...+ +..+|+|. +.+-+|.++..+..+++|+|.+-+
T Consensus 51 Lt~~Er~~~~~~~~~~~~~----~~~viagv~~~~~~~ai~~a~~a~~~Gad~v~~ 102 (288)
T cd00954 51 LSVEERKQIAEIVAEAAKG----KVTLIAHVGSLNLKESQELAKHAEELGYDAISA 102 (288)
T ss_pred CCHHHHHHHHHHHHHHhCC----CCeEEeccCCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 3466777777777765432 45778888 467888888888888888887765
No 204
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=79.36 E-value=13 Score=34.18 Aligned_cols=123 Identities=14% Similarity=0.145 Sum_probs=70.1
Q ss_pred chhHHHHHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhCCCCceeee-----------eccccccccccch
Q 019890 159 PDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEAL-----------VAKSGLNVFAHNI 227 (334)
Q Consensus 159 ~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~P~i~vE~L-----------l~~ag~dv~~Hnl 227 (334)
..+|.+.|+.+.+.|++++.+|-.+++.. ..| ...+++++|.+.. ++.+.+- +.+.|.+.+--+
T Consensus 29 ~~dp~~~a~~~~~~g~~~i~i~dl~~~~~-~~~--~n~~~~~~i~~~~-~~pv~~~ggi~~~~d~~~~~~~G~~~vilg- 103 (232)
T TIGR03572 29 IGDPVNAARIYNAKGADELIVLDIDASKR-GRE--PLFELISNLAEEC-FMPLTVGGGIRSLEDAKKLLSLGADKVSIN- 103 (232)
T ss_pred CCCHHHHHHHHHHcCCCEEEEEeCCCccc-CCC--CCHHHHHHHHHhC-CCCEEEECCCCCHHHHHHHHHcCCCEEEEC-
Confidence 34889999999999999999998886421 112 2346777777653 2222111 222333322222
Q ss_pred hhHHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCc-ceEeeceEEec----------C---CCHHHHHHHHHHHHHcCCcE
Q 019890 228 ETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAG-TLTKTSIMLGC----------G---ETPDQVVSTMEKVRAAGVDV 293 (334)
Q Consensus 228 ETv~~l~~~Vr~r~~tye~sL~vL~~ak~~~p~G-l~tkTgiMVGl----------G---ETdEE~~etl~~Lre~gvd~ 293 (334)
...+ ...+.++++.+.++.. +.+.-++-.|+ | ++..+..+..+.+.+.|+|.
T Consensus 104 -------------~~~l-~~~~~~~~~~~~~~~~~i~vsld~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~G~d~ 169 (232)
T TIGR03572 104 -------------TAAL-ENPDLIEEAARRFGSQCVVVSIDVKKELDGSDYKVYSDNGRRATGRDPVEWAREAEQLGAGE 169 (232)
T ss_pred -------------hhHh-cCHHHHHHHHHHcCCceEEEEEEeccCCCCCcEEEEECCCcccCCCCHHHHHHHHHHcCCCE
Confidence 1111 1235555555554431 33344433331 1 24556778889999999999
Q ss_pred EeeccCc
Q 019890 294 MTFGQYM 300 (334)
Q Consensus 294 vtigqYl 300 (334)
+.+-...
T Consensus 170 i~i~~i~ 176 (232)
T TIGR03572 170 ILLNSID 176 (232)
T ss_pred EEEeCCC
Confidence 9987543
No 205
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=79.33 E-value=13 Score=35.48 Aligned_cols=51 Identities=10% Similarity=0.197 Sum_probs=34.2
Q ss_pred CHHHHHHHHHHHHHhCCCcceEeeceEEec-CCCHHHHHHHHHHHHHcCCcEEeec
Q 019890 243 NFKQSLDVLMMAKDYVPAGTLTKTSIMLGC-GETPDQVVSTMEKVRAAGVDVMTFG 297 (334)
Q Consensus 243 tye~sL~vL~~ak~~~p~Gl~tkTgiMVGl-GETdEE~~etl~~Lre~gvd~vtig 297 (334)
+-+++.++++.+.+..++ +..+|+|. +.+-+|.++..+..+++|+|.+-+.
T Consensus 52 s~~Er~~~~~~~~~~~~~----~~~vi~gv~~~~~~~~i~~a~~a~~~G~d~v~~~ 103 (292)
T PRK03170 52 THEEHEELIRAVVEAVNG----RVPVIAGTGSNSTAEAIELTKFAEKAGADGALVV 103 (292)
T ss_pred CHHHHHHHHHHHHHHhCC----CCcEEeecCCchHHHHHHHHHHHHHcCCCEEEEC
Confidence 456666777766665432 34577777 4577777788888888888766663
No 206
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=79.19 E-value=12 Score=35.68 Aligned_cols=51 Identities=10% Similarity=0.287 Sum_probs=39.0
Q ss_pred CCHHHHHHHHHHHHHhCCCcceEeeceEEec-CCCHHHHHHHHHHHHHcCCcEEee
Q 019890 242 ANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC-GETPDQVVSTMEKVRAAGVDVMTF 296 (334)
Q Consensus 242 ~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGl-GETdEE~~etl~~Lre~gvd~vti 296 (334)
-+.+++.++++.+.+..++ +.-+|+|. +.+-+|.++..+..+++|+|.+-+
T Consensus 51 Lt~~Er~~l~~~~~~~~~~----~~~vi~gv~~~st~~~i~~a~~a~~~Gad~v~v 102 (289)
T PF00701_consen 51 LTDEERKELLEIVVEAAAG----RVPVIAGVGANSTEEAIELARHAQDAGADAVLV 102 (289)
T ss_dssp S-HHHHHHHHHHHHHHHTT----SSEEEEEEESSSHHHHHHHHHHHHHTT-SEEEE
T ss_pred CCHHHHHHHHHHHHHHccC----ceEEEecCcchhHHHHHHHHHHHhhcCceEEEE
Confidence 3566778888887775443 45599999 679999999999999999997654
No 207
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=78.54 E-value=9.3 Score=36.23 Aligned_cols=49 Identities=16% Similarity=0.139 Sum_probs=36.9
Q ss_pred CHHHHHHHHHHHHHhCCCcceEeeceEEec--CCCHHHHHHHHHHHHHcCCcEEeec
Q 019890 243 NFKQSLDVLMMAKDYVPAGTLTKTSIMLGC--GETPDQVVSTMEKVRAAGVDVMTFG 297 (334)
Q Consensus 243 tye~sL~vL~~ak~~~p~Gl~tkTgiMVGl--GETdEE~~etl~~Lre~gvd~vtig 297 (334)
+.+...++++.+|+.. .--++|.+ +.+.+|+.+.++.|.+.|+|.+++.
T Consensus 146 ~~~~~~eiv~~vr~~~------~~pv~vKl~~~~~~~~~~~~a~~l~~~Gad~i~~~ 196 (289)
T cd02810 146 DPEAVANLLKAVKAAV------DIPLLVKLSPYFDLEDIVELAKAAERAGADGLTAI 196 (289)
T ss_pred CHHHHHHHHHHHHHcc------CCCEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEE
Confidence 4566678888888742 12344444 6788999999999999999999985
No 208
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=77.55 E-value=17 Score=34.32 Aligned_cols=52 Identities=12% Similarity=0.218 Sum_probs=35.6
Q ss_pred CCHHHHHHHHHHHHHhCCCcceEeeceEEec-CCCHHHHHHHHHHHHHcCCcEEeec
Q 019890 242 ANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC-GETPDQVVSTMEKVRAAGVDVMTFG 297 (334)
Q Consensus 242 ~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGl-GETdEE~~etl~~Lre~gvd~vtig 297 (334)
-+.+++.++++.+.+...+ +.-+|+|. +.+-+|.++..+..+++|+|.+-+.
T Consensus 47 ls~~Er~~l~~~~~~~~~~----~~~vi~gv~~~~~~~~i~~a~~a~~~Gad~v~v~ 99 (281)
T cd00408 47 LTDEERKEVIEAVVEAVAG----RVPVIAGVGANSTREAIELARHAEEAGADGVLVV 99 (281)
T ss_pred CCHHHHHHHHHHHHHHhCC----CCeEEEecCCccHHHHHHHHHHHHHcCCCEEEEC
Confidence 3456667777777665432 34577888 5577778888888888888866664
No 209
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=77.54 E-value=22 Score=32.93 Aligned_cols=123 Identities=11% Similarity=0.137 Sum_probs=71.1
Q ss_pred chhHHHHHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhCCCCceeee-----------eccccccccccch
Q 019890 159 PDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEAL-----------VAKSGLNVFAHNI 227 (334)
Q Consensus 159 ~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~P~i~vE~L-----------l~~ag~dv~~Hnl 227 (334)
..+|.+.|+.+.+.|+++++++..+++. ...+ ...+++++|++.. ++.|.+- +...|.+.+.-+
T Consensus 26 ~~d~~~~a~~~~~~G~~~i~i~d~~~~~-~~~~--~~~~~i~~i~~~~-~~pv~~~GGI~s~~d~~~~l~~G~~~v~ig- 100 (243)
T cd04731 26 AGDPVELAKRYNEQGADELVFLDITASS-EGRE--TMLDVVERVAEEV-FIPLTVGGGIRSLEDARRLLRAGADKVSIN- 100 (243)
T ss_pred CCCHHHHHHHHHHCCCCEEEEEcCCccc-ccCc--ccHHHHHHHHHhC-CCCEEEeCCCCCHHHHHHHHHcCCceEEEC-
Confidence 5588899999999999999999988642 2222 2457888887753 2222221 222333322222
Q ss_pred hhHHHHHHhhcCCCCCHHHHHHHHHHHHHhCC-CcceEeeceEE------------ecCCCHHHHHHHHHHHHHcCCcEE
Q 019890 228 ETVEELQSAVRDHRANFKQSLDVLMMAKDYVP-AGTLTKTSIML------------GCGETPDQVVSTMEKVRAAGVDVM 294 (334)
Q Consensus 228 ETv~~l~~~Vr~r~~tye~sL~vL~~ak~~~p-~Gl~tkTgiMV------------GlGETdEE~~etl~~Lre~gvd~v 294 (334)
..+ + +..+.++++.+.++ +.+.+.-++.. |+-+|+++..+..+.+.+.|+|.+
T Consensus 101 ---~~~----------~-~~p~~~~~i~~~~~~~~i~~~ld~k~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~~G~d~i 166 (243)
T cd04731 101 ---SAA----------V-ENPELIREIAKRFGSQCVVVSIDAKRRGDGGYEVYTHGGRKPTGLDAVEWAKEVEELGAGEI 166 (243)
T ss_pred ---chh----------h-hChHHHHHHHHHcCCCCEEEEEEeeecCCCceEEEEcCCceecCCCHHHHHHHHHHCCCCEE
Confidence 111 1 11233333333332 12444444332 234567788888899999999998
Q ss_pred eeccCc
Q 019890 295 TFGQYM 300 (334)
Q Consensus 295 tigqYl 300 (334)
.+..+-
T Consensus 167 ~v~~i~ 172 (243)
T cd04731 167 LLTSMD 172 (243)
T ss_pred EEeccC
Confidence 886543
No 210
>cd00384 ALAD_PBGS Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. They either contain a cysteine-rich zinc binding site (consensus DXCXCX(Y/F)X3G(H/Q)CG) or an aspartate-rich magnesium binding site (consensus DXALDX(Y/F)X3G(H/Q)DG). The cyste
Probab=77.42 E-value=33 Score=34.00 Aligned_cols=120 Identities=23% Similarity=0.340 Sum_probs=77.7
Q ss_pred CCCCchhHHHHHHHHHHCCCcEEEEeeecCCCCCCc-hH------HHHHHHHHHHHhhCCCCcee--e-e----------
Q 019890 155 PPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQ-GS------GHFAQTVRKLKELKPNMLIE--A-L---------- 214 (334)
Q Consensus 155 ~~ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~-Ga------~~fa~lIr~Ik~~~P~i~vE--~-L---------- 214 (334)
..++.+.+.++++.+.++|++-|.|=|+.. ..|. |. .-+.+.|+.||+.+|++.|= + |
T Consensus 46 ~r~s~d~l~~~~~~~~~~Gi~~v~LFgv~~--~Kd~~gs~A~~~~g~v~~air~iK~~~p~l~vi~DvcLc~YT~hGHcG 123 (314)
T cd00384 46 YRLSVDSLVEEAEELADLGIRAVILFGIPE--HKDEIGSEAYDPDGIVQRAIRAIKEAVPELVVITDVCLCEYTDHGHCG 123 (314)
T ss_pred eeeCHHHHHHHHHHHHHCCCCEEEEECCCC--CCCCCcccccCCCChHHHHHHHHHHhCCCcEEEEeeeccCCCCCCcce
Confidence 357899999999999999999999999842 2221 11 24678999999999986441 1 1
Q ss_pred eccccccccccchhhHHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCcceEeeceEEecCCCHHHHHHHHHHHHHcCCcEE
Q 019890 215 VAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVM 294 (334)
Q Consensus 215 l~~ag~dv~~HnlETv~~l~~~Vr~r~~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGlGETdEE~~etl~~Lre~gvd~v 294 (334)
+.+.+ .-.|-+|++.|-+. -+.+|+. --+ ++--|++|=|- +...=+-|.+.|+..+
T Consensus 124 il~~~---~idND~Tl~~L~k~-------------Als~A~A-GAD-iVAPSdMMDGr------V~aIR~aLd~~g~~~v 179 (314)
T cd00384 124 ILKDD---YVDNDATLELLAKI-------------AVSHAEA-GAD-IVAPSDMMDGR------VAAIREALDEAGFSDV 179 (314)
T ss_pred eccCC---cCccHHHHHHHHHH-------------HHHHHHc-CCC-eeecccccccH------HHHHHHHHHHCCCCCC
Confidence 22222 22355565555322 1223332 123 66688888774 4445556788899888
Q ss_pred eeccCc
Q 019890 295 TFGQYM 300 (334)
Q Consensus 295 tigqYl 300 (334)
.|-.|.
T Consensus 180 ~ImsYs 185 (314)
T cd00384 180 PIMSYS 185 (314)
T ss_pred ceeecH
Confidence 888773
No 211
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=77.35 E-value=18 Score=35.01 Aligned_cols=52 Identities=15% Similarity=0.212 Sum_probs=38.4
Q ss_pred CCHHHHHHHHHHHHHhCCCcceEeeceEEecCCCHHHHHHHHHHHHHcCCcEEeec
Q 019890 242 ANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFG 297 (334)
Q Consensus 242 ~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGlGETdEE~~etl~~Lre~gvd~vtig 297 (334)
-+-+++.++++.+.+...+ +.-+|+|.|.+-+|.++..++.+++|+|.+-+.
T Consensus 57 Lt~eEr~~~~~~~~~~~~~----~~pvi~gv~~~t~~~i~~~~~a~~~Gadav~~~ 108 (303)
T PRK03620 57 LTPDEYSQVVRAAVETTAG----RVPVIAGAGGGTAQAIEYAQAAERAGADGILLL 108 (303)
T ss_pred CCHHHHHHHHHHHHHHhCC----CCcEEEecCCCHHHHHHHHHHHHHhCCCEEEEC
Confidence 4556777788777765433 456788886688888889999999999877663
No 212
>TIGR00977 LeuA_rel 2-isopropylmalate synthase/homocitrate synthase family protein. This model represents uncharacterized proteins related to 2-isopropylmalate synthases and homocitrate synthases but phylogenetically distint. Each species represented in the seed alignment also has a member of a known family of 2-isopropylmalate synthases.
Probab=76.97 E-value=70 Score=33.78 Aligned_cols=144 Identities=17% Similarity=0.203 Sum_probs=82.6
Q ss_pred CCCCchhHHHHHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhCC-CCceeee------------------e
Q 019890 155 PPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKP-NMLIEAL------------------V 215 (334)
Q Consensus 155 ~~ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~P-~i~vE~L------------------l 215 (334)
.+++.++-.++|+.+.++|+++|=+.- |-.....+ +.+++|.+... +..|-.+ +
T Consensus 18 ~~~s~eeKl~Ia~~L~~~GVd~IE~G~------p~~s~~d~-~~v~~i~~~~~~~~~i~~~~r~~r~~~~~~~d~~~ea~ 90 (526)
T TIGR00977 18 VSFSLEDKIRIAERLDDLGIHYIEGGW------PGANPKDV-QFFWQLKEMNFKNAKIVAFCSTRRPHKKVEEDKMLQAL 90 (526)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEeC------CCCChHHH-HHHHHHHHhCCCCcEEEEEeeecCCCCCCchHHHHHHH
Confidence 368999999999999999999987731 11111222 33444443221 1222111 2
Q ss_pred ccccccccccchhhHHH-HHHhhcCCCCCHHHHHH----HHHHHHHhCCCcceEeeceE---EecCCCHHHHHHHHHHHH
Q 019890 216 AKSGLNVFAHNIETVEE-LQSAVRDHRANFKQSLD----VLMMAKDYVPAGTLTKTSIM---LGCGETPDQVVSTMEKVR 287 (334)
Q Consensus 216 ~~ag~dv~~HnlETv~~-l~~~Vr~r~~tye~sL~----vL~~ak~~~p~Gl~tkTgiM---VGlGETdEE~~etl~~Lr 287 (334)
.+++.++++-.+-+++. +...++ .+.++.|+ .++.+|+. |+.+.-+.+ -|.--..+.+.+.++.+.
T Consensus 91 ~~~~~~~v~i~~~~Sd~h~~~~l~---~s~ee~l~~~~~~v~~ak~~---g~~V~~~~e~f~D~~r~~~~~l~~~~~~a~ 164 (526)
T TIGR00977 91 IKAETPVVTIFGKSWDLHVLEALQ---TTLEENLAMIYDTVAYLKRQ---GDEVIYDAEHFFDGYKANPEYALATLATAQ 164 (526)
T ss_pred hcCCCCEEEEEeCCCHHHHHHHhC---CCHHHHHHHHHHHHHHHHHc---CCeEEEEeeeeeecccCCHHHHHHHHHHHH
Confidence 33444444433333332 222333 45566554 47777775 455443333 333345788899999999
Q ss_pred HcCCcEEeeccCcCCCCCCCcccccCCHHHHHHH
Q 019890 288 AAGVDVMTFGQYMRPSKRHMPVSEYITPEAFERY 321 (334)
Q Consensus 288 e~gvd~vtigqYlrP~~~h~~v~~yv~P~~f~~~ 321 (334)
++|++.+.|. -| ..+.+|+++..+
T Consensus 165 ~aGad~i~i~----DT------vG~~~P~~v~~l 188 (526)
T TIGR00977 165 QAGADWLVLC----DT------NGGTLPHEISEI 188 (526)
T ss_pred hCCCCeEEEe----cC------CCCcCHHHHHHH
Confidence 9999998775 22 237777776544
No 213
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=76.52 E-value=38 Score=29.26 Aligned_cols=50 Identities=20% Similarity=0.255 Sum_probs=29.8
Q ss_pred chhHHHHHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhCCCCceeee
Q 019890 159 PDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEAL 214 (334)
Q Consensus 159 ~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~P~i~vE~L 214 (334)
.++..+..+++.+.|+..|.|.- +|.....+.+.+++|++......+.++
T Consensus 11 ~~~~~~~l~~l~~~g~~~i~lr~------~~~~~~~~~~~~~~i~~~~~~~~~~l~ 60 (196)
T cd00564 11 GEDLLEVVEAALKGGVTLVQLRE------KDLSARELLELARALRELCRKYGVPLI 60 (196)
T ss_pred cchHHHHHHHHHhcCCCEEEEeC------CCCCHHHHHHHHHHHHHHHHHhCCeEE
Confidence 35677888888888999887743 232333444566667654332333443
No 214
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=76.47 E-value=69 Score=30.21 Aligned_cols=118 Identities=19% Similarity=0.253 Sum_probs=73.0
Q ss_pred CCchhHHHHHHHHHHCCCcEE--EEeeecCCCCCCchHHHHHHHHHHHHhhCCC-CceeeeeccccccccccchhhHHHH
Q 019890 157 PDPDEPTNVAEAIASWGLDYV--VITSVDRDDLADQGSGHFAQTVRKLKELKPN-MLIEALVAKSGLNVFAHNIETVEEL 233 (334)
Q Consensus 157 ld~~Ep~~~A~av~~~GlkeV--VLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~P~-i~vE~Ll~~ag~dv~~HnlETv~~l 233 (334)
.+.++..+.++.+.+.|++-. .|.|. ....+++.++++.+++..++ +.+..+.--.|-. +
T Consensus 155 ~s~~~~~~ai~~l~~~Gi~v~~~~i~Gl------~et~~d~~~~~~~l~~l~~~~i~l~~l~p~~gT~-----------l 217 (296)
T TIGR00433 155 HTYDDRVDTLENAKKAGLKVCSGGIFGL------GETVEDRIGLALALANLPPESVPINFLVKIKGTP-----------L 217 (296)
T ss_pred CCHHHHHHHHHHHHHcCCEEEEeEEEeC------CCCHHHHHHHHHHHHhCCCCEEEeeeeEEcCCCc-----------c
Confidence 467888888888899998621 12332 12346778888888776544 2223221111111 1
Q ss_pred HHhhcCCCCCHHHHHHHHHHHHHhCCCcceEeeceEEecCCCHHHHHHHHHH-HHHcCCcEEeeccCc
Q 019890 234 QSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEK-VRAAGVDVMTFGQYM 300 (334)
Q Consensus 234 ~~~Vr~r~~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGlGETdEE~~etl~~-Lre~gvd~vtigqYl 300 (334)
.. . ...+-++.++++..++..+|. ..|.++-|+. ..+-+.... +-..|++.+.+|-||
T Consensus 218 ~~--~-~~~s~~~~~~~ia~~r~~lp~-----~~i~~~~~~~-~~~~~~~~~~~l~~G~n~i~~g~~~ 276 (296)
T TIGR00433 218 AD--N-KELSADDALKTIALARIIMPK-----AEIRLAGGRE-VNMRELQQAMCFMAGANSIFVGDYL 276 (296)
T ss_pred CC--C-CCCCHHHHHHHHHHHHHHCCc-----ceEEEeCCcc-hhhhhhHHHHHHHhcCceEEEcCcc
Confidence 11 1 246788889999999998886 2334555554 234444444 677899999999998
No 215
>PRK08629 coproporphyrinogen III oxidase; Provisional
Probab=76.25 E-value=28 Score=35.64 Aligned_cols=65 Identities=14% Similarity=0.126 Sum_probs=45.3
Q ss_pred CCCCHHHHHHHHHHHHHhCCCcceEeeceE------------Eec-C-CCHHHHHHHHHHHHHcCCcEEeeccCcCCCCC
Q 019890 240 HRANFKQSLDVLMMAKDYVPAGTLTKTSIM------------LGC-G-ETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKR 305 (334)
Q Consensus 240 r~~tye~sL~vL~~ak~~~p~Gl~tkTgiM------------VGl-G-ETdEE~~etl~~Lre~gvd~vtigqYlrP~~~ 305 (334)
++.+.+++.+.|+.+.+..|+.+.+ -.++ +++ + |..+++.+....+.+ |+..+.++.|.+|...
T Consensus 209 PgqT~e~~~~~l~~~~~l~p~~is~-y~L~~~~~t~~~~~~~~~~p~~d~~~~~~~~~~~~l~-Gy~~~s~~~f~~~~~~ 286 (433)
T PRK08629 209 PGQTDEVLQHDLDIAKRLDPRQITT-YPLMKSHQTRKSVKGSLGASQKDNERQYYQIINELFG-QYNQLSAWAFSKKNDE 286 (433)
T ss_pred CCCCHHHHHHHHHHHHhCCCCEEEE-ccceeccCchhhhcCCCCCcCHHHHHHHHHHHHHHHC-CCeEecccccCCCCch
Confidence 6789999999999999987763222 2222 222 2 234557777777777 9999988888888765
Q ss_pred C
Q 019890 306 H 306 (334)
Q Consensus 306 h 306 (334)
|
T Consensus 287 ~ 287 (433)
T PRK08629 287 G 287 (433)
T ss_pred h
Confidence 5
No 216
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=74.92 E-value=13 Score=34.94 Aligned_cols=107 Identities=12% Similarity=0.156 Sum_probs=62.7
Q ss_pred CCchhHHHHHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhCCC--Cceeee----------eccccccccc
Q 019890 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPN--MLIEAL----------VAKSGLNVFA 224 (334)
Q Consensus 157 ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~P~--i~vE~L----------l~~ag~dv~~ 224 (334)
.|.-.+.++.+.+.+.|++++-+==.|.--.|.... =.++|++|++..++ +.+++. +.++|.|.+.
T Consensus 13 ad~~~l~~~i~~l~~~g~d~lHiDimDG~FVPN~tf--g~~~i~~lr~~~~~~~~dvHLMv~~P~~~i~~~~~~gad~I~ 90 (223)
T PRK08745 13 ADFARLGEEVDNVLKAGADWVHFDVMDNHYVPNLTI--GPMVCQALRKHGITAPIDVHLMVEPVDRIVPDFADAGATTIS 90 (223)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEEecccCccCCCccc--CHHHHHHHHhhCCCCCEEEEeccCCHHHHHHHHHHhCCCEEE
Confidence 466788899999999999998772222111121111 04678888765233 445554 6788888888
Q ss_pred cchhhHHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCcceEeeceEEecCCCHHHHHHHHH
Q 019890 225 HNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTME 284 (334)
Q Consensus 225 HnlETv~~l~~~Vr~r~~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGlGETdEE~~etl~ 284 (334)
-+.|.... -.++|+.+|+. | .++|+-+.-+-..+.+...+.
T Consensus 91 ~H~Ea~~~--------------~~~~l~~Ir~~---g--~k~GlalnP~T~~~~i~~~l~ 131 (223)
T PRK08745 91 FHPEASRH--------------VHRTIQLIKSH---G--CQAGLVLNPATPVDILDWVLP 131 (223)
T ss_pred EcccCccc--------------HHHHHHHHHHC---C--CceeEEeCCCCCHHHHHHHHh
Confidence 77774221 13455556653 4 466666666655555544443
No 217
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=74.39 E-value=55 Score=31.15 Aligned_cols=55 Identities=18% Similarity=0.286 Sum_probs=33.7
Q ss_pred CCCchhHHHHHHHHHHCCCcEEEEeeecCCCCCCchH---------------HHHHHHHHHHHhhCCCCc
Q 019890 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGS---------------GHFAQTVRKLKELKPNML 210 (334)
Q Consensus 156 ~ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga---------------~~fa~lIr~Ik~~~P~i~ 210 (334)
-.|.+.-.+.++++.+.|++-|-|-=--.|-+.||.. +.+-+++++|++..+++.
T Consensus 20 ~P~~~~~~~~~~~l~~~Gad~iElGiPfsDP~aDGpvIq~a~~~al~~G~~~~~~~~~v~~ir~~~~~~p 89 (256)
T TIGR00262 20 DPTLETSLEIIKTLIEAGADALELGVPFSDPLADGPTIQAADLRALRAGMTPEKCFELLKKVRQKHPNIP 89 (256)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCcCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCC
Confidence 3567777888888888888877663323444555431 345566777765433433
No 218
>COG4464 CapC Capsular polysaccharide biosynthesis protein [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=74.37 E-value=29 Score=33.08 Aligned_cols=30 Identities=20% Similarity=0.211 Sum_probs=26.7
Q ss_pred CCCCchhHHHHHHHHHHCCCcEEEEeeecC
Q 019890 155 PPPDPDEPTNVAEAIASWGLDYVVITSVDR 184 (334)
Q Consensus 155 ~~ld~~Ep~~~A~av~~~GlkeVVLTSv~r 184 (334)
++-+.+|-...++++.+.|++.+|-||-..
T Consensus 15 Gp~s~eesl~ml~~A~~qGvt~iVaTsHh~ 44 (254)
T COG4464 15 GPKSLEESLAMLREAVRQGVTKIVATSHHL 44 (254)
T ss_pred CCCcHHHHHHHHHHHHHcCceEEeeccccc
Confidence 567889999999999999999999999764
No 219
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=73.91 E-value=63 Score=28.69 Aligned_cols=130 Identities=18% Similarity=0.182 Sum_probs=64.2
Q ss_pred hhHHHHHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhCCCCceeee-------eccccccccccchhhHHH
Q 019890 160 DEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEAL-------VAKSGLNVFAHNIETVEE 232 (334)
Q Consensus 160 ~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~P~i~vE~L-------l~~ag~dv~~HnlETv~~ 232 (334)
++..+.++.+.+.|++.|.|.--+ +. ...+.+.++++++......+.++ +.+.|.|.++-..+
T Consensus 21 ~~~~~~~~~~~~~gv~~v~lr~~~---~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~a~~~gad~vh~~~~---- 90 (212)
T PRK00043 21 RDLLEVVEAALEGGVTLVQLREKG---LD---TRERLELARALKELCRRYGVPLIVNDRVDLALAVGADGVHLGQD---- 90 (212)
T ss_pred ccHHHHHHHHHhcCCCEEEEeCCC---CC---HHHHHHHHHHHHHHHHHhCCeEEEeChHHHHHHcCCCEEecCcc----
Confidence 456677778888899988774322 22 23344566666544222222233 33344443321110
Q ss_pred HHHhhcCCCCCHHHHHHHHHHHHHhCCCcceEeeceEEec-CCCHHHHHHHHHHHHHcCCcEEeeccCcCCCCCCCcccc
Q 019890 233 LQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC-GETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMPVSE 311 (334)
Q Consensus 233 l~~~Vr~r~~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGl-GETdEE~~etl~~Lre~gvd~vtigqYlrP~~~h~~v~~ 311 (334)
......++..+ ..+.++|. --|.+|+.+.. +.|+|.|.++.+. |+..|-....
T Consensus 91 ------------~~~~~~~~~~~---------~~~~~~g~~~~t~~e~~~a~----~~gaD~v~~~~~~-~~~~~~~~~~ 144 (212)
T PRK00043 91 ------------DLPVADARALL---------GPDAIIGLSTHTLEEAAAAL----AAGADYVGVGPIF-PTPTKKDAKA 144 (212)
T ss_pred ------------cCCHHHHHHHc---------CCCCEEEEeCCCHHHHHHHh----HcCCCEEEECCcc-CCCCCCCCCC
Confidence 00112222222 12334555 45777765544 6799999988553 4443322221
Q ss_pred cCCHHHHHHHHHHH
Q 019890 312 YITPEAFERYRALG 325 (334)
Q Consensus 312 yv~P~~f~~~~~~a 325 (334)
....+.+..+++..
T Consensus 145 ~~g~~~~~~~~~~~ 158 (212)
T PRK00043 145 PQGLEGLREIRAAV 158 (212)
T ss_pred CCCHHHHHHHHHhc
Confidence 22356666665543
No 220
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=73.74 E-value=23 Score=33.23 Aligned_cols=120 Identities=14% Similarity=0.186 Sum_probs=70.7
Q ss_pred chhHHHHHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhCCCCceeee-----------eccccccccccch
Q 019890 159 PDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEAL-----------VAKSGLNVFAHNI 227 (334)
Q Consensus 159 ~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~P~i~vE~L-----------l~~ag~dv~~Hnl 227 (334)
..+|++.|+.+.+.|++++.++-.++.. . +...-.++|++|.+.. ++.|.+- +..+|.+.+--+-
T Consensus 29 ~~dp~~~a~~~~~~G~~~l~v~Dl~~~~--~-~~~~n~~~i~~i~~~~-~~pv~~~GGi~s~~d~~~~~~~Ga~~vivgt 104 (254)
T TIGR00735 29 AGDPVELAQRYDEEGADELVFLDITASS--E-GRTTMIDVVERTAETV-FIPLTVGGGIKSIEDVDKLLRAGADKVSINT 104 (254)
T ss_pred CCCHHHHHHHHHHcCCCEEEEEcCCccc--c-cChhhHHHHHHHHHhc-CCCEEEECCCCCHHHHHHHHHcCCCEEEECh
Confidence 4588889999999999999998877542 1 2223457788887653 2322221 3334444332221
Q ss_pred hhHHHHHHhhcCCCCCHHHHHHHHHHHHHhCC-CcceEeeceE-------------E--ecCCCHHHHHHHHHHHHHcCC
Q 019890 228 ETVEELQSAVRDHRANFKQSLDVLMMAKDYVP-AGTLTKTSIM-------------L--GCGETPDQVVSTMEKVRAAGV 291 (334)
Q Consensus 228 ETv~~l~~~Vr~r~~tye~sL~vL~~ak~~~p-~Gl~tkTgiM-------------V--GlGETdEE~~etl~~Lre~gv 291 (334)
. .-+..++++++.+.++ +-+.+.-++- + |.-++.++..+.++.|.+.|+
T Consensus 105 --------------~-~~~~p~~~~~~~~~~~~~~iv~slD~~~g~~~~~~~~~v~i~gw~~~~~~~~~~~~~~l~~~G~ 169 (254)
T TIGR00735 105 --------------A-AVKNPELIYELADRFGSQCIVVAIDAKRVYVNSYCWYEVYIYGGRESTGLDAVEWAKEVEKLGA 169 (254)
T ss_pred --------------h-HhhChHHHHHHHHHcCCCCEEEEEEeccCCCCCCccEEEEEeCCcccCCCCHHHHHHHHHHcCC
Confidence 1 1122355555555554 2144444321 1 123457788999999999999
Q ss_pred cEEeec
Q 019890 292 DVMTFG 297 (334)
Q Consensus 292 d~vtig 297 (334)
+.+.+-
T Consensus 170 ~~iivt 175 (254)
T TIGR00735 170 GEILLT 175 (254)
T ss_pred CEEEEe
Confidence 988884
No 221
>PRK06294 coproporphyrinogen III oxidase; Provisional
Probab=73.69 E-value=60 Score=32.33 Aligned_cols=64 Identities=9% Similarity=0.127 Sum_probs=41.3
Q ss_pred CCCCHHHHHHHHHHHHHhCCCcceEeeceEE--e-------------cCCC---HHHHHHHHHHHHHcCCcEEeeccCcC
Q 019890 240 HRANFKQSLDVLMMAKDYVPAGTLTKTSIML--G-------------CGET---PDQVVSTMEKVRAAGVDVMTFGQYMR 301 (334)
Q Consensus 240 r~~tye~sL~vL~~ak~~~p~Gl~tkTgiMV--G-------------lGET---dEE~~etl~~Lre~gvd~vtigqYlr 301 (334)
++.+.+++.+.|+.+.+..|+.+. -..+++ | +-+. .+.+....+.|.+.|+....+..|.+
T Consensus 165 Pgqt~~~~~~~l~~~~~l~~~~is-~y~l~~~~gT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~Gy~~yeis~fa~ 243 (370)
T PRK06294 165 PTQSLSDFIVDLHQAITLPITHIS-LYNLTIDPHTSFYKHRKRLLPSIADEEILAEMSLAAEELLTSQGFTRYELASYAK 243 (370)
T ss_pred CCCCHHHHHHHHHHHHccCCCeEE-EeeeEecCCChHHHHHhcCCCCCcCHHHHHHHHHHHHHHHHHcCCCeeeeeeeeC
Confidence 466777778888888877666332 222222 1 1111 23344566779999999999999999
Q ss_pred CCC
Q 019890 302 PSK 304 (334)
Q Consensus 302 P~~ 304 (334)
|..
T Consensus 244 ~~~ 246 (370)
T PRK06294 244 PQA 246 (370)
T ss_pred CCc
Confidence 864
No 222
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=73.24 E-value=26 Score=34.05 Aligned_cols=52 Identities=10% Similarity=0.252 Sum_probs=39.4
Q ss_pred CCHHHHHHHHHHHHHhCCCcceEeeceEEecC-CCHHHHHHHHHHHHHcCCcEEeec
Q 019890 242 ANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCG-ETPDQVVSTMEKVRAAGVDVMTFG 297 (334)
Q Consensus 242 ~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGlG-ETdEE~~etl~~Lre~gvd~vtig 297 (334)
-+.+++.++++.+.+...+ +..+|+|.| .+-+|.++..+..+++|+|.+-+.
T Consensus 58 Lt~eEr~~v~~~~~~~~~g----rvpvi~Gv~~~~t~~ai~~a~~A~~~Gad~vlv~ 110 (309)
T cd00952 58 LTWEEKQAFVATVVETVAG----RVPVFVGATTLNTRDTIARTRALLDLGADGTMLG 110 (309)
T ss_pred CCHHHHHHHHHHHHHHhCC----CCCEEEEeccCCHHHHHHHHHHHHHhCCCEEEEC
Confidence 4567778888888776433 456889995 688889999999999999866554
No 223
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=72.62 E-value=20 Score=33.54 Aligned_cols=118 Identities=11% Similarity=0.123 Sum_probs=66.1
Q ss_pred hhHHHHHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhCCCCceeee-----------eccccccccccchh
Q 019890 160 DEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEAL-----------VAKSGLNVFAHNIE 228 (334)
Q Consensus 160 ~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~P~i~vE~L-----------l~~ag~dv~~HnlE 228 (334)
.+|.+.|+...+.|++++.+.--+. .. |.....++|++|.+.. ++.+.+= +.+.|.+....+-.
T Consensus 32 ~dp~~~a~~~~~~g~~~l~ivDLd~--~~--g~~~n~~~i~~i~~~~-~~pv~vgGGirs~edv~~~l~~Ga~kvviGs~ 106 (241)
T PRK14024 32 GSPLDAALAWQRDGAEWIHLVDLDA--AF--GRGSNRELLAEVVGKL-DVKVELSGGIRDDESLEAALATGCARVNIGTA 106 (241)
T ss_pred CCHHHHHHHHHHCCCCEEEEEeccc--cC--CCCccHHHHHHHHHHc-CCCEEEcCCCCCHHHHHHHHHCCCCEEEECch
Confidence 3889999999999999999965543 22 2222348888887753 2333321 44555554433322
Q ss_pred hHHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCcceEeece------EEecCCCHHHHHHHHHHHHHcCCcEEeec
Q 019890 229 TVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSI------MLGCGETPDQVVSTMEKVRAAGVDVMTFG 297 (334)
Q Consensus 229 Tv~~l~~~Vr~r~~tye~sL~vL~~ak~~~p~Gl~tkTgi------MVGlGETdEE~~etl~~Lre~gvd~vtig 297 (334)
.. +..++++++-+.++.-+.+.-++ +.|+-++..+..+.++.+.+.|++.+.+-
T Consensus 107 ~l---------------~~p~l~~~i~~~~~~~i~vsld~~~~~v~~~Gw~~~~~~~~~~~~~l~~~G~~~iiv~ 166 (241)
T PRK14024 107 AL---------------ENPEWCARVIAEHGDRVAVGLDVRGHTLAARGWTRDGGDLWEVLERLDSAGCSRYVVT 166 (241)
T ss_pred Hh---------------CCHHHHHHHHHHhhhhEEEEEEEeccEeccCCeeecCccHHHHHHHHHhcCCCEEEEE
Confidence 11 11122222222222112111111 23554566778899999999999988875
No 224
>PRK04452 acetyl-CoA decarbonylase/synthase complex subunit delta; Provisional
Probab=72.57 E-value=28 Score=34.59 Aligned_cols=147 Identities=16% Similarity=0.204 Sum_probs=77.7
Q ss_pred HHHHHHHH-HCCCcEEEEe--eecCCCCCCchHHHHHHHHHHHHhhCCCCceeeeeccc-----cccccccchhhHHHHH
Q 019890 163 TNVAEAIA-SWGLDYVVIT--SVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVAKS-----GLNVFAHNIETVEELQ 234 (334)
Q Consensus 163 ~~~A~av~-~~GlkeVVLT--Sv~rdDl~d~Ga~~fa~lIr~Ik~~~P~i~vE~Ll~~a-----g~dv~~HnlETv~~l~ 234 (334)
.+.|+... +.|.++|.|- |.+. |-.|.+.+.|+.+|+.|.+.. + +-+.+.-+ .++++.--++.+..--
T Consensus 78 ~~~Ak~q~~~~GAd~Idl~~~s~dp-~~~d~~~~e~~~~Vk~V~eav-d--~PL~Id~s~n~~kD~evleaale~~~g~~ 153 (319)
T PRK04452 78 AAWAKKCVEEYGADMITLHLISTDP-NGKDKSPEEAAKTVEEVLQAV-D--VPLIIGGSGNPEKDAEVLEKVAEAAEGER 153 (319)
T ss_pred HHHHHHHHHHhCCCEEEEECCCCCc-ccccchHHHHHHHHHHHHHhC-C--CCEEEecCCCCCCCHHHHHHHHHHhCCCC
Confidence 55555444 7899998764 5543 234556778999999996642 2 22211111 2333332222221100
Q ss_pred HhhcCCCCCHHHHHHHHHHHHHhCCCcceEeeceEEecC-CCHHHHHHHHHHHHHcCC--cEEeeccCcCCCCCCCcccc
Q 019890 235 SAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCG-ETPDQVVSTMEKVRAAGV--DVMTFGQYMRPSKRHMPVSE 311 (334)
Q Consensus 235 ~~Vr~r~~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGlG-ETdEE~~etl~~Lre~gv--d~vtigqYlrP~~~h~~v~~ 311 (334)
+-+. .++.+.+-+++.-+++. |.. ++++. -.-+...++...|.++|+ +.+-+- |....+..--
T Consensus 154 pLIn--Sat~en~~~i~~lA~~y---~~~-----Vva~s~~Dln~ak~L~~~l~~~Gi~~edIviD----P~~~~lg~g~ 219 (319)
T PRK04452 154 CLLG--SAEEDNYKKIAAAAMAY---GHA-----VIAWSPLDINLAKQLNILLTELGVPRERIVMD----PTTGALGYGI 219 (319)
T ss_pred CEEE--ECCHHHHHHHHHHHHHh---CCe-----EEEEcHHHHHHHHHHHHHHHHcCCCHHHEEEe----CCcccccCCH
Confidence 1122 35666666777777765 222 23332 335667777778888888 666555 4443232222
Q ss_pred cCCHHHHHHHHHHHHH
Q 019890 312 YITPEAFERYRALGME 327 (334)
Q Consensus 312 yv~P~~f~~~~~~a~~ 327 (334)
-..-+.++..|..|+.
T Consensus 220 e~~~~~~e~IR~aAl~ 235 (319)
T PRK04452 220 EYSYSVMERIRLAALK 235 (319)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 2344556666666663
No 225
>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]
Probab=72.43 E-value=10 Score=36.23 Aligned_cols=101 Identities=16% Similarity=0.268 Sum_probs=59.2
Q ss_pred cchHHHHHHHh----hcCchhhhhccCCCCC----cccccCCCCCcceEEEEee-----cCCCCCCCCCcccCCCCCCCC
Q 019890 90 DKYVQIKKKLR----ELKLHTVCEEAKCPNL----GECWSGGETGTATATIMIL-----GDTCTRGCRFCNVKTSRAPPP 156 (334)
Q Consensus 90 ~~~~~~~~~l~----~~~L~Tvceea~cpni----~ec~~~~~~~~~Tatfm~i-----gdgCtr~C~FC~V~~~r~p~~ 156 (334)
.....++++|+ +-.+||-.-+ .|++ .+-||.. .-.+-| .|+ ..|.|+.+-++. . .
T Consensus 84 ~s~eD~~~ll~aGADKVSINsaAv~--~p~lI~~~a~~FGsQ------ciVvaIDakr~~~g--~~~~~~v~~~gG-r-~ 151 (256)
T COG0107 84 RSVEDARKLLRAGADKVSINSAAVK--DPELITEAADRFGSQ------CIVVAIDAKRVPDG--ENGWYEVFTHGG-R-E 151 (256)
T ss_pred CCHHHHHHHHHcCCCeeeeChhHhc--ChHHHHHHHHHhCCc------eEEEEEEeeeccCC--CCCcEEEEecCC-C-c
Confidence 56778888887 3456665443 2543 2334432 111111 023 578887665533 1 1
Q ss_pred CCchhHHHHHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhh
Q 019890 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKEL 205 (334)
Q Consensus 157 ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~ 205 (334)
..--++.+-|+++.++|..||+|||.|+|-... |.+ .+++++|++.
T Consensus 152 ~t~~d~~~Wa~~~e~~GAGEIlLtsmD~DGtk~-GyD--l~l~~~v~~~ 197 (256)
T COG0107 152 DTGLDAVEWAKEVEELGAGEILLTSMDRDGTKA-GYD--LELTRAVREA 197 (256)
T ss_pred CCCcCHHHHHHHHHHcCCceEEEeeeccccccc-CcC--HHHHHHHHHh
Confidence 233356777888899999999999999864433 322 4677777664
No 226
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=71.86 E-value=17 Score=34.30 Aligned_cols=109 Identities=7% Similarity=0.004 Sum_probs=68.3
Q ss_pred CCchhHHHHHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhCCCCceeee----------eccccccccccc
Q 019890 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEAL----------VAKSGLNVFAHN 226 (334)
Q Consensus 157 ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~P~i~vE~L----------l~~ag~dv~~Hn 226 (334)
.|...+.++.+.+.++|++++-+==-|.--.|..... ..+|+.|++..| +.+++. +.++|.|.+.-+
T Consensus 22 ad~~~l~~el~~l~~~g~d~lHiDVMDG~FVPNitfG--p~~i~~i~~~~~-~DvHLMv~~P~~~i~~~~~aGad~It~H 98 (228)
T PRK08091 22 SNWLKFNETLTTLSENQLRLLHFDIADGQFSPFFTVG--AIAIKQFPTHCF-KDVHLMVRDQFEVAKACVAAGADIVTLQ 98 (228)
T ss_pred cCHHHHHHHHHHHHHCCCCEEEEeccCCCcCCccccC--HHHHHHhCCCCC-EEEEeccCCHHHHHHHHHHhCCCEEEEc
Confidence 4667888999999999999987722221111211110 356677764333 455554 678899988877
Q ss_pred hhhHHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCcceEeeceEEecCCCHHHHHHHHHH
Q 019890 227 IETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEK 285 (334)
Q Consensus 227 lETv~~l~~~Vr~r~~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGlGETdEE~~etl~~ 285 (334)
.|.... -.++|+++|+. |+.++.|+-+.-+-..+++...+..
T Consensus 99 ~Ea~~~--------------~~~~l~~Ik~~---g~~~kaGlalnP~Tp~~~i~~~l~~ 140 (228)
T PRK08091 99 VEQTHD--------------LALTIEWLAKQ---KTTVLIGLCLCPETPISLLEPYLDQ 140 (228)
T ss_pred ccCccc--------------HHHHHHHHHHC---CCCceEEEEECCCCCHHHHHHHHhh
Confidence 774321 24566677775 6556888888888666666655553
No 227
>cd06543 GH18_PF-ChiA-like PF-ChiA is an uncharacterized chitinase found in the hyperthermophilic archaeon Pyrococcus furiosus with a glycosyl hydrolase family 18 (GH18) catalytic domain as well as a cellulose-binding domain. Members of this domain family are found not only in archaea but also in eukaryotes and prokaryotes. PF-ChiA exhibits hydrolytic activity toward both colloidal and crystalline (beta/alpha) chitins at high temperature.
Probab=71.78 E-value=87 Score=30.49 Aligned_cols=155 Identities=19% Similarity=0.214 Sum_probs=83.6
Q ss_pred hhhhhccCCCCCcccccCCCCCcceEEEEeecCCCCCCCCCcccCCCCCCCCCC-chhHHHHHHHHHHCCCcEEEEeeec
Q 019890 105 HTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRAPPPPD-PDEPTNVAEAIASWGLDYVVITSVD 183 (334)
Q Consensus 105 ~Tvceea~cpni~ec~~~~~~~~~Tatfm~igdgCtr~C~FC~V~~~r~p~~ld-~~Ep~~~A~av~~~GlkeVVLTSv~ 183 (334)
.+.|.++.|-.+ +-+|+...+. |.-+ . .+...++ .....+.+.++++.|.+-++=.|+.
T Consensus 18 ~~~~~~~g~~~v------------~lAFi~~~~~----~~~~---w-~g~~~~~~~~~~~~~i~~lk~~G~kViiS~GG~ 77 (294)
T cd06543 18 TTYAAATGVKAF------------TLAFIVASGG----CKPA---W-GGSYPLDQGGWIKSDIAALRAAGGDVIVSFGGA 77 (294)
T ss_pred HHHHHHcCCCEE------------EEEEEEcCCC----Cccc---C-CCCCCcccchhHHHHHHHHHHcCCeEEEEecCC
Confidence 366777666655 8889876543 3222 1 2222344 4566777889999998766666664
Q ss_pred CCC-CCC--chHHHHHHHHHHHHhhCCCCceeeeeccccccccccchhhHHHHHHhhcCCCCCHHHHHHHHHHHHHhCCC
Q 019890 184 RDD-LAD--QGSGHFAQTVRKLKELKPNMLIEALVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPA 260 (334)
Q Consensus 184 rdD-l~d--~Ga~~fa~lIr~Ik~~~P~i~vE~Ll~~ag~dv~~HnlETv~~l~~~Vr~r~~tye~sL~vL~~ak~~~p~ 260 (334)
... +.. .....|++-+..+-.. -++|.+-.-+|.-. .. .+...+++.+.|+.+++.+|+
T Consensus 78 ~g~~~~~~~~~~~~~~~a~~~~i~~------------y~~dgiDfDiE~~~-----~~-d~~~~~~~~~al~~Lq~~~p~ 139 (294)
T cd06543 78 SGTPLATSCTSADQLAAAYQKVIDA------------YGLTHLDFDIEGGA-----LT-DTAAIDRRAQALALLQKEYPD 139 (294)
T ss_pred CCCccccCcccHHHHHHHHHHHHHH------------hCCCeEEEeccCCc-----cc-cchhHHHHHHHHHHHHHHCCC
Confidence 321 211 1234454444433322 22222222233210 12 245577888888899988886
Q ss_pred cceEeeceEEec-CCCHHHHHHHHHHHHHcCC--cEEeeccC
Q 019890 261 GTLTKTSIMLGC-GETPDQVVSTMEKVRAAGV--DVMTFGQY 299 (334)
Q Consensus 261 Gl~tkTgiMVGl-GETdEE~~etl~~Lre~gv--d~vtigqY 299 (334)
+.+.-++=+.= |=+.+ =.+.++..++.|+ |.|.|..|
T Consensus 140 -l~vs~Tlp~~p~gl~~~-g~~~l~~a~~~Gv~~d~VNiMtm 179 (294)
T cd06543 140 -LKISFTLPVLPTGLTPD-GLNVLEAAAANGVDLDTVNIMTM 179 (294)
T ss_pred -cEEEEecCCCCCCCChh-HHHHHHHHHHcCCCcceeeeeee
Confidence 66554432211 33322 2356777777775 57777665
No 228
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=71.43 E-value=25 Score=32.08 Aligned_cols=120 Identities=13% Similarity=0.212 Sum_probs=64.0
Q ss_pred chhHHHHHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhCCCCceeee-----------eccccccccccch
Q 019890 159 PDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEAL-----------VAKSGLNVFAHNI 227 (334)
Q Consensus 159 ~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~P~i~vE~L-----------l~~ag~dv~~Hnl 227 (334)
..+|.+.|+.+.+.|++++.++..+. .. .|.....+++++|.+.. ++.+.+- +.+.|.+..--+-
T Consensus 29 ~~~~~~~a~~~~~~g~~~i~v~dld~--~~-~g~~~~~~~i~~i~~~~-~~pv~~~GGI~~~ed~~~~~~~Ga~~vilg~ 104 (233)
T PRK00748 29 SDDPVAQAKAWEDQGAKWLHLVDLDG--AK-AGKPVNLELIEAIVKAV-DIPVQVGGGIRSLETVEALLDAGVSRVIIGT 104 (233)
T ss_pred cCCHHHHHHHHHHcCCCEEEEEeCCc--cc-cCCcccHHHHHHHHHHC-CCCEEEcCCcCCHHHHHHHHHcCCCEEEECc
Confidence 45889999999999999999988653 11 12223457788777652 2222221 3334444332221
Q ss_pred hhHHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCcceEeece---EE---ec-CCCHHHHHHHHHHHHHcCCcEEeec
Q 019890 228 ETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSI---ML---GC-GETPDQVVSTMEKVRAAGVDVMTFG 297 (334)
Q Consensus 228 ETv~~l~~~Vr~r~~tye~sL~vL~~ak~~~p~Gl~tkTgi---MV---Gl-GETdEE~~etl~~Lre~gvd~vtig 297 (334)
..++ ..+.++++.+.++.-+.+.-++ .| |. ..++.+..+..+.+.+.|++.+.+-
T Consensus 105 --------------~~l~-~~~~l~ei~~~~~~~i~vsid~k~~~v~~~g~~~~~~~~~~e~~~~~~~~g~~~ii~~ 166 (233)
T PRK00748 105 --------------AAVK-NPELVKEACKKFPGKIVVGLDARDGKVATDGWLETSGVTAEDLAKRFEDAGVKAIIYT 166 (233)
T ss_pred --------------hHHh-CHHHHHHHHHHhCCCceeeeeccCCEEEEccCeecCCCCHHHHHHHHHhcCCCEEEEe
Confidence 1111 1122333333222213222222 12 33 3356677888899999999966554
No 229
>cd07947 DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synthase and related proteins, catalytic TIM barrel domain. Re-citrate synthase (Re-CS) is a Clostridium kluyveri enzyme that converts acetyl-CoA and oxaloacetate to citrate. In most organisms, this reaction is catalyzed by Si-citrate synthase which is Si-face stereospecific with respect to C-2 of oxaloacetate, and phylogenetically unrelated to Re-citrate synthase. Re-citrate synthase is also found in a few other strictly anaerobic organisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with
Probab=71.36 E-value=35 Score=32.95 Aligned_cols=123 Identities=10% Similarity=0.071 Sum_probs=69.3
Q ss_pred CCchhHHHHHHHHHHCC-----CcEEEEeeecCCCCCCchHHHHHHHHHHHHhh--CCCCceeee--------ecccccc
Q 019890 157 PDPDEPTNVAEAIASWG-----LDYVVITSVDRDDLADQGSGHFAQTVRKLKEL--KPNMLIEAL--------VAKSGLN 221 (334)
Q Consensus 157 ld~~Ep~~~A~av~~~G-----lkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~--~P~i~vE~L--------l~~ag~d 221 (334)
.+.++=.++++.+.+.| +++|-++|.. ...+..+.+.+... .|.+..-+- ..++|.+
T Consensus 18 ~~~~~Kv~i~~~L~~~G~~~~~v~~IE~~s~~--------~~d~~~v~~~~~~~~~~~~v~~~~r~~~~die~A~~~g~~ 89 (279)
T cd07947 18 YTVEQIVKIYDYLHELGGGSGVIRQTEFFLYT--------EKDREAVEACLDRGYKFPEVTGWIRANKEDLKLVKEMGLK 89 (279)
T ss_pred CCHHHHHHHHHHHHHcCCCCCccceEEecCcC--------hHHHHHHHHHHHcCCCCCEEEEEecCCHHHHHHHHHcCcC
Confidence 38888899999999999 9999776532 13343433333321 233322111 4556777
Q ss_pred ccccchhhHHH-HHHhhcCCCCCHHHHHH----HHHHHHHhCCCcceEeeceEEec-CCCHHHH--------HHHHHHHH
Q 019890 222 VFAHNIETVEE-LQSAVRDHRANFKQSLD----VLMMAKDYVPAGTLTKTSIMLGC-GETPDQV--------VSTMEKVR 287 (334)
Q Consensus 222 v~~HnlETv~~-l~~~Vr~r~~tye~sL~----vL~~ak~~~p~Gl~tkTgiMVGl-GETdEE~--------~etl~~Lr 287 (334)
.++..+-+++. .+..++ .+.++.++ .++.+|+. |+.+. +++ |.+..|+ .+.++...
T Consensus 90 ~v~i~~s~S~~~~~~~~~---~t~~e~l~~~~~~v~~a~~~---g~~v~----~~~ed~~r~d~~~~v~~~~~~~~~~~~ 159 (279)
T cd07947 90 ETGILMSVSDYHIFKKLK---MTREEAMEKYLEIVEEALDH---GIKPR----CHLEDITRADIYGFVLPFVNKLMKLSK 159 (279)
T ss_pred EEEEEEcCCHHHHHHHhC---cCHHHHHHHHHHHHHHHHHC---CCeEE----EEEEcccCCCcccchHHHHHHHHHHHH
Confidence 76666655544 334444 45566554 55555553 55443 444 5665532 23344444
Q ss_pred HcCCc-EEeec
Q 019890 288 AAGVD-VMTFG 297 (334)
Q Consensus 288 e~gvd-~vtig 297 (334)
+.|+| .+.+.
T Consensus 160 ~~G~~~~i~l~ 170 (279)
T cd07947 160 ESGIPVKIRLC 170 (279)
T ss_pred HCCCCEEEEec
Confidence 58999 67553
No 230
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=71.08 E-value=65 Score=31.21 Aligned_cols=156 Identities=8% Similarity=0.035 Sum_probs=82.5
Q ss_pred CCchhHHHHHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhCCCCceeeeeccccccccccchhhHHHHHH-
Q 019890 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVAKSGLNVFAHNIETVEELQS- 235 (334)
Q Consensus 157 ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~P~i~vE~Ll~~ag~dv~~HnlETv~~l~~- 235 (334)
.+.+.+..+.++..+.+.-=|.-++... +...|.+.+...+....+.. +|.+.+ .+|-. .++|.+.+..+
T Consensus 26 ~n~e~~~avi~aAe~~~~Pvii~~~~~~--~~~~~~~~~~~~~~~~a~~~---~vpv~l---HlDH~-~~~e~i~~Al~~ 96 (281)
T PRK06806 26 ANMEMVMGAIKAAEELNSPIILQIAEVR--LNHSPLHLIGPLMVAAAKQA---KVPVAV---HFDHG-MTFEKIKEALEI 96 (281)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEEcCcch--hccCChHHHHHHHHHHHHHC---CCCEEE---ECCCC-CCHHHHHHHHHc
Confidence 5678888888888888866665555443 33345666777777665542 222210 01110 01222222111
Q ss_pred ---h--hcCCCCCHHHHHHHHHHHHHhCC-CcceEeec-eEEe-------c-CCCHHHHHHHHHHHHHcCCcEEee--cc
Q 019890 236 ---A--VRDHRANFKQSLDVLMMAKDYVP-AGTLTKTS-IMLG-------C-GETPDQVVSTMEKVRAAGVDVMTF--GQ 298 (334)
Q Consensus 236 ---~--Vr~r~~tye~sL~vL~~ak~~~p-~Gl~tkTg-iMVG-------l-GETdEE~~etl~~Lre~gvd~vti--gq 298 (334)
. +|....++++.++.-++++++.. .|+.+... .-|| . |-+-.+..+..++.++.|+|.+.+ |.
T Consensus 97 G~tsVm~d~s~~~~~eni~~t~~v~~~a~~~gv~veaE~ghlG~~d~~~~~~g~s~t~~eea~~f~~~tg~DyLAvaiG~ 176 (281)
T PRK06806 97 GFTSVMFDGSHLPLEENIQKTKEIVELAKQYGATVEAEIGRVGGSEDGSEDIEMLLTSTTEAKRFAEETDVDALAVAIGN 176 (281)
T ss_pred CCCEEEEcCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeeECCccCCcccccceeCCHHHHHHHHHhhCCCEEEEccCC
Confidence 1 22234567777665555555431 24444322 2333 1 333346677788888899999999 73
Q ss_pred CcCCCCCCCcccccCCHHHHHHHHHHHHHh
Q 019890 299 YMRPSKRHMPVSEYITPEAFERYRALGMEM 328 (334)
Q Consensus 299 YlrP~~~h~~v~~yv~P~~f~~~~~~a~~~ 328 (334)
.- ++.. .-++=.|+.++++...+
T Consensus 177 ~h-g~~~------~~~~l~~~~L~~i~~~~ 199 (281)
T PRK06806 177 AH-GMYN------GDPNLRFDRLQEINDVV 199 (281)
T ss_pred CC-CCCC------CCCccCHHHHHHHHHhc
Confidence 32 3321 12333477777776654
No 231
>PRK14057 epimerase; Provisional
Probab=70.85 E-value=15 Score=35.37 Aligned_cols=106 Identities=11% Similarity=0.037 Sum_probs=63.9
Q ss_pred CCchhHHHHHHHHHHCCCcEEEEeeecCCCCCC--chHHHHHHHHHHHHhhCCCCceeee----------eccccccccc
Q 019890 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLAD--QGSGHFAQTVRKLKELKPNMLIEAL----------VAKSGLNVFA 224 (334)
Q Consensus 157 ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d--~Ga~~fa~lIr~Ik~~~P~i~vE~L----------l~~ag~dv~~ 224 (334)
.|.-.+.++.+.+.+.|++++-+==-|..-.|. .| .++|++|++..| +.+++. +.++|.|.+.
T Consensus 29 aD~~~L~~el~~l~~~g~d~lHiDVMDG~FVPNitfG----p~~i~~i~~~~p-~DvHLMV~~P~~~i~~~~~aGad~It 103 (254)
T PRK14057 29 GQWIALHRYLQQLEALNQPLLHLDLMDGQFCPQFTVG----PWAVGQLPQTFI-KDVHLMVADQWTAAQACVKAGAHCIT 103 (254)
T ss_pred cCHHHHHHHHHHHHHCCCCEEEEeccCCccCCccccC----HHHHHHhccCCC-eeEEeeeCCHHHHHHHHHHhCCCEEE
Confidence 466788999999999999988772211111121 12 356777765333 455554 6788999888
Q ss_pred cchhhHHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCcce-------EeeceEEecCCCHHHHHHHHH
Q 019890 225 HNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTL-------TKTSIMLGCGETPDQVVSTME 284 (334)
Q Consensus 225 HnlETv~~l~~~Vr~r~~tye~sL~vL~~ak~~~p~Gl~-------tkTgiMVGlGETdEE~~etl~ 284 (334)
-+.|+...+ .++|+.+|+. |+. ++.|+-+.-+=..+.+...+.
T Consensus 104 ~H~Ea~~~~--------------~~~l~~Ir~~---G~k~~~~~~~~kaGlAlnP~Tp~e~i~~~l~ 153 (254)
T PRK14057 104 LQAEGDIHL--------------HHTLSWLGQQ---TVPVIGGEMPVIRGISLCPATPLDVIIPILS 153 (254)
T ss_pred EeeccccCH--------------HHHHHHHHHc---CCCcccccccceeEEEECCCCCHHHHHHHHH
Confidence 777753221 3455566664 332 456766666755555555554
No 232
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=70.69 E-value=32 Score=33.14 Aligned_cols=52 Identities=13% Similarity=0.166 Sum_probs=37.2
Q ss_pred CCHHHHHHHHHHHHHhCCCcceEeeceEEec-CCCHHHHHHHHHHHHHcCCcEEeec
Q 019890 242 ANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC-GETPDQVVSTMEKVRAAGVDVMTFG 297 (334)
Q Consensus 242 ~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGl-GETdEE~~etl~~Lre~gvd~vtig 297 (334)
-+.++++++++.+.+...+ +.-+|+|. +.+-+|.++..+..+++|+|.+-+.
T Consensus 50 Ls~~Er~~l~~~~~~~~~g----~~pvi~gv~~~~t~~ai~~a~~A~~~Gad~v~v~ 102 (294)
T TIGR02313 50 LTLEERKQAIENAIDQIAG----RIPFAPGTGALNHDETLELTKFAEEAGADAAMVI 102 (294)
T ss_pred CCHHHHHHHHHHHHHHhCC----CCcEEEECCcchHHHHHHHHHHHHHcCCCEEEEc
Confidence 4567777777777665432 45678888 4677788888888888888866654
No 233
>PRK08005 epimerase; Validated
Probab=70.41 E-value=34 Score=31.89 Aligned_cols=103 Identities=15% Similarity=0.140 Sum_probs=64.0
Q ss_pred CCchhHHHHHHHHHHCCCcEEEEeeecCCCCCCchH---HHH-HHHHHHHHhhCC-CCceeee----------ecccccc
Q 019890 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGS---GHF-AQTVRKLKELKP-NMLIEAL----------VAKSGLN 221 (334)
Q Consensus 157 ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga---~~f-a~lIr~Ik~~~P-~i~vE~L----------l~~ag~d 221 (334)
.|+..+.++++.+.++|++.+-+ |.-||.. -.| .++|+.|++... .+.+++. +.++|.|
T Consensus 10 ad~~~l~~el~~l~~~g~d~lHi------DvMDG~FVPN~tfG~~~i~~l~~~t~~~~DvHLMv~~P~~~i~~~~~~gad 83 (210)
T PRK08005 10 ADPLRYAEALTALHDAPLGSLHL------DIEDTSFINNITFGMKTIQAVAQQTRHPLSFHLMVSSPQRWLPWLAAIRPG 83 (210)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEE------eccCCCcCCccccCHHHHHHHHhcCCCCeEEEeccCCHHHHHHHHHHhCCC
Confidence 46678888999999999998877 3333311 001 467788876421 1455554 6788888
Q ss_pred ccccchhhHHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCcceEeeceEEecCCCHHHHHHHHH
Q 019890 222 VFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTME 284 (334)
Q Consensus 222 v~~HnlETv~~l~~~Vr~r~~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGlGETdEE~~etl~ 284 (334)
.+.-+.|+.+. ..++|+.+|+. | .+.|+-+.-+-..+.+...+.
T Consensus 84 ~It~H~Ea~~~--------------~~~~l~~Ik~~---G--~k~GlAlnP~Tp~~~i~~~l~ 127 (210)
T PRK08005 84 WIFIHAESVQN--------------PSEILADIRAI---G--AKAGLALNPATPLLPYRYLAL 127 (210)
T ss_pred EEEEcccCccC--------------HHHHHHHHHHc---C--CcEEEEECCCCCHHHHHHHHH
Confidence 88877774321 23455666664 4 467777777755555555444
No 234
>cd00537 MTHFR Methylenetetrahydrofolate reductase (MTHFR). 5,10-Methylenetetrahydrofolate is reduced to 5-methyltetrahydrofolate by methylenetetrahydrofolate reductase, a cytoplasmic, NAD(P)-dependent enzyme. 5-methyltetrahydrofolate is utilized by methionine synthase to convert homocysteine to methionine. The enzymatic mechanism is a ping-pong bi-bi mechanism, in which NAD(P)+ release precedes the binding of methylenetetrahydrofolate and the acceptor is free FAD. The family includes the 5,10-methylenetetrahydrofolate reductase EC:1.7.99.5 from prokaryotes and methylenetetrahydrofolate reductase EC: 1.5.1.20 from eukaryotes. The bacterial enzyme is a homotetramer and NADH is the preferred reductant while the eukaryotic enzyme is a homodimer and NADPH is the preferred reductant. In humans, there are several clinically significant mutations in MTHFR that result in hyperhomocysteinemia, which is a risk factor for the development of cardiovascular disease.
Probab=70.07 E-value=68 Score=30.32 Aligned_cols=50 Identities=12% Similarity=0.064 Sum_probs=35.3
Q ss_pred CCchhHHHHHHHHHHCCCcEEEEeeecCCCCCC------chHHHHHHHHHHHHhhC
Q 019890 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLAD------QGSGHFAQTVRKLKELK 206 (334)
Q Consensus 157 ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d------~Ga~~fa~lIr~Ik~~~ 206 (334)
.+..++......+.+.|++.|++.++|.....+ ....+-.++|+.|+..+
T Consensus 70 ~n~~~l~~~L~~~~~~Gi~~iL~l~GD~~~~~~~~~~~~~~~~~a~~Li~~i~~~~ 125 (274)
T cd00537 70 RNRIELQSILLGAHALGIRNILALRGDPPKGGDQPGAKPVGFVYAVDLVELIRKEN 125 (274)
T ss_pred CCHHHHHHHHHHHHHCCCCeEEEeCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHhc
Confidence 445889999999999999999988887532221 22234567888887654
No 235
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=70.05 E-value=32 Score=32.76 Aligned_cols=51 Identities=14% Similarity=0.268 Sum_probs=34.6
Q ss_pred CHHHHHHHHHHHHHhCCCcceEeeceEEec-CCCHHHHHHHHHHHHHcCCcEEeec
Q 019890 243 NFKQSLDVLMMAKDYVPAGTLTKTSIMLGC-GETPDQVVSTMEKVRAAGVDVMTFG 297 (334)
Q Consensus 243 tye~sL~vL~~ak~~~p~Gl~tkTgiMVGl-GETdEE~~etl~~Lre~gvd~vtig 297 (334)
+-+++.++++.+.+...+ +..+|+|. ..+-+|.++..+..+++|+|.+-+.
T Consensus 49 s~~Er~~~~~~~~~~~~~----~~~vi~gv~~~s~~~~i~~a~~a~~~Gad~v~v~ 100 (285)
T TIGR00674 49 SHEEHKKVIEFVVDLVNG----RVPVIAGTGSNATEEAISLTKFAEDVGADGFLVV 100 (285)
T ss_pred CHHHHHHHHHHHHHHhCC----CCeEEEeCCCccHHHHHHHHHHHHHcCCCEEEEc
Confidence 456666777766665332 34577888 4577788888888888888866554
No 236
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=70.01 E-value=32 Score=33.09 Aligned_cols=51 Identities=16% Similarity=0.192 Sum_probs=36.1
Q ss_pred CCHHHHHHHHHHHHHhCCCcceEeeceEEecCCCHHHHHHHHHHHHHcCCcEEee
Q 019890 242 ANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTF 296 (334)
Q Consensus 242 ~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGlGETdEE~~etl~~Lre~gvd~vti 296 (334)
-+.+++.++++.+.+...+ +.-+|+|.|.+-+|-++..+..+++|+|.+-+
T Consensus 55 Lt~eEr~~v~~~~~~~~~g----~~pvi~gv~~~t~~ai~~a~~a~~~Gadav~~ 105 (296)
T TIGR03249 55 LTPAEYEQVVEIAVSTAKG----KVPVYTGVGGNTSDAIEIARLAEKAGADGYLL 105 (296)
T ss_pred CCHHHHHHHHHHHHHHhCC----CCcEEEecCccHHHHHHHHHHHHHhCCCEEEE
Confidence 3456777777777665432 45677888667788888888888888886654
No 237
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=69.98 E-value=89 Score=29.39 Aligned_cols=136 Identities=15% Similarity=0.191 Sum_probs=84.0
Q ss_pred CCCCchhHHHHHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhCCCCceeeeeccccccccccchhhHHHHH
Q 019890 155 PPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVAKSGLNVFAHNIETVEELQ 234 (334)
Q Consensus 155 ~~ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~P~i~vE~Ll~~ag~dv~~HnlETv~~l~ 234 (334)
..+|.+...+.++.+.+.|++-|++.|-.. .......+...++++.+.+...+ ...++.+-
T Consensus 13 g~iD~~~~~~~i~~l~~~Gv~gi~~~GstG-E~~~ls~~Er~~l~~~~~~~~~~----------~~~vi~gv-------- 73 (281)
T cd00408 13 GEVDLDALRRLVEFLIEAGVDGLVVLGTTG-EAPTLTDEERKEVIEAVVEAVAG----------RVPVIAGV-------- 73 (281)
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEECCCCc-ccccCCHHHHHHHHHHHHHHhCC----------CCeEEEec--------
Confidence 478999999999999999999988866442 12222234445666666554321 12233322
Q ss_pred HhhcCCCCCHHHHHHHHHHHHHhCCCcceEeeceEEecCCCHHHHHHHHHHHHHcCCcEEeeccCcCCCCCCCcccccCC
Q 019890 235 SAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMPVSEYIT 314 (334)
Q Consensus 235 ~~Vr~r~~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGlGETdEE~~etl~~Lre~gvd~vtigqYlrP~~~h~~v~~yv~ 314 (334)
...+.++.++..+.+++.--+|+.+-.-.. +.-+++++.+.++.+.+. . -+++.-|-.|..... .++
T Consensus 74 -----~~~~~~~~i~~a~~a~~~Gad~v~v~pP~y--~~~~~~~~~~~~~~ia~~-~-~~pi~iYn~P~~tg~----~l~ 140 (281)
T cd00408 74 -----GANSTREAIELARHAEEAGADGVLVVPPYY--NKPSQEGIVAHFKAVADA-S-DLPVILYNIPGRTGV----DLS 140 (281)
T ss_pred -----CCccHHHHHHHHHHHHHcCCCEEEECCCcC--CCCCHHHHHHHHHHHHhc-C-CCCEEEEECccccCC----CCC
Confidence 134566778888888886444343333222 246889999999999987 3 367777877754211 344
Q ss_pred HHHHHHHH
Q 019890 315 PEAFERYR 322 (334)
Q Consensus 315 P~~f~~~~ 322 (334)
|+.+.++.
T Consensus 141 ~~~~~~L~ 148 (281)
T cd00408 141 PETIARLA 148 (281)
T ss_pred HHHHHHHh
Confidence 55554443
No 238
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=69.76 E-value=34 Score=32.80 Aligned_cols=49 Identities=14% Similarity=0.239 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHhCCCcceEeeceEEecCCCHHHHHHHHHHHHHcCCcEEee
Q 019890 244 FKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTF 296 (334)
Q Consensus 244 ye~sL~vL~~ak~~~p~Gl~tkTgiMVGlGETdEE~~etl~~Lre~gvd~vti 296 (334)
.+++.++++.+.+...+ +.-+|+|.|-+-+|.++..+..+++|+|.+-+
T Consensus 52 ~eEr~~l~~~~~~~~~~----~~pvi~gv~~~t~~~i~~a~~a~~~Gad~v~~ 100 (289)
T cd00951 52 PDEYAQVVRAAVEETAG----RVPVLAGAGYGTATAIAYAQAAEKAGADGILL 100 (289)
T ss_pred HHHHHHHHHHHHHHhCC----CCCEEEecCCCHHHHHHHHHHHHHhCCCEEEE
Confidence 34445555554443321 23345555335555566666666666665544
No 239
>cd04824 eu_ALAD_PBGS_cysteine_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. The eukaryotic PBGSs represented by this model, which contain a cysteine-rich zinc binding motif (DXCXCX(Y/F)X3G(H/Q)CG), require zinc for their activity, they
Probab=69.70 E-value=12 Score=37.06 Aligned_cols=57 Identities=23% Similarity=0.324 Sum_probs=43.3
Q ss_pred CCCCchhHHHHHHHHHHCCCcEEEEeeecCCCCCC-c-hH------HHHHHHHHHHHhhCCCCce
Q 019890 155 PPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLAD-Q-GS------GHFAQTVRKLKELKPNMLI 211 (334)
Q Consensus 155 ~~ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d-~-Ga------~~fa~lIr~Ik~~~P~i~v 211 (334)
..++.+.+.++++.+.++|++.|.|=|+...+..| . |. .-+.+.|+.||+.+|++.|
T Consensus 46 ~r~s~d~l~~~~~~~~~~Gi~~v~LFgv~~~~~Kd~~~gs~a~~~~g~v~~air~iK~~~pdl~v 110 (320)
T cd04824 46 NRYGVNRLEEFLRPLVAKGLRSVILFGVPLKPGKDDRSGSAADDEDGPVIQAIKLIREEFPELLI 110 (320)
T ss_pred eeeCHHHHHHHHHHHHHCCCCEEEEeCCCccccCCcCccccccCCCChHHHHHHHHHHhCCCcEE
Confidence 45789999999999999999999999985222222 1 21 2467899999999998643
No 240
>PTZ00372 endonuclease 4-like protein; Provisional
Probab=69.45 E-value=90 Score=32.14 Aligned_cols=147 Identities=14% Similarity=0.229 Sum_probs=78.9
Q ss_pred CchhHHHHHHHHHHCCCcEEEEeeecCC-CCC-CchHHHHHHHHHHHHhhCCCCceeeeecc-ccc-cccccchhhHHHH
Q 019890 158 DPDEPTNVAEAIASWGLDYVVITSVDRD-DLA-DQGSGHFAQTVRKLKELKPNMLIEALVAK-SGL-NVFAHNIETVEEL 233 (334)
Q Consensus 158 d~~Ep~~~A~av~~~GlkeVVLTSv~rd-Dl~-d~Ga~~fa~lIr~Ik~~~P~i~vE~Ll~~-ag~-dv~~HnlETv~~l 233 (334)
+.+...+..+...++|+++||+..+... +.. +.+...+++.|..+.+...+ |.++|-. +|. ..+.
T Consensus 216 Sv~~~~~eL~rA~~LGa~~VV~HPGs~~~~~~~ee~i~~i~e~L~~~la~~~g--V~IlLENmag~g~~lG--------- 284 (413)
T PTZ00372 216 SYDAFLDDLQRCEQLGIKLYNFHPGSTVGQCSKEEGIKNIADCINKAHEETKS--VIIVLENTAGQKNSVG--------- 284 (413)
T ss_pred HHHHHHHHHHHHHHcCCCEEEECCCcCCCCCCHHHHHHHHHHHHHHHHhCcCC--CEEEEecCCCCCCccc---------
Confidence 3455677777888899999999776531 111 22344455555554332222 2222110 121 1222
Q ss_pred HHhhcCCCCCHHHHHHHHHHHHHhCCCcceEeeceEEecC---CCHHHHHHHHHHHHH-cC---CcEEeeccCcCC----
Q 019890 234 QSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCG---ETPDQVVSTMEKVRA-AG---VDVMTFGQYMRP---- 302 (334)
Q Consensus 234 ~~~Vr~r~~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGlG---ETdEE~~etl~~Lre-~g---vd~vtigqYlrP---- 302 (334)
.++++..++|+.+...-.-|+.+=|.=+..-| +|.+.+.++|+.+.+ +| +..+|++.-.-|
T Consensus 285 --------~~~eeL~~Iid~v~~~~rlGvCLDTcHafaAGydl~t~e~~~~~l~~f~~~iGl~rL~~vHLNDSk~~~GS~ 356 (413)
T PTZ00372 285 --------SKFEDLRDIIALVEDKSRVGVCLDTCHLFAAGYDIRTKESFDKVMKEFDEIVGLKYLKAVHLNDSKSDLGSG 356 (413)
T ss_pred --------CCHHHHHHHHHhcCCcCCeEEEEEHHHHHhcCCCCCcHHHHHHHHHHHHHhcChhheeEEEEEcCCCccCCC
Confidence 45555555555553210114555554444335 677888888887753 34 567777744333
Q ss_pred CCCCCcc-cccCCHHHHHHHHH
Q 019890 303 SKRHMPV-SEYITPEAFERYRA 323 (334)
Q Consensus 303 ~~~h~~v-~~yv~P~~f~~~~~ 323 (334)
..+|+++ ...+.-+.|..+-.
T Consensus 357 ~DRH~~IG~G~Ig~~~f~~l~~ 378 (413)
T PTZ00372 357 LDRHENIGKGKLGMETFKFIMN 378 (413)
T ss_pred cccccCcCCCCcChHHHHHHHh
Confidence 2478888 46666666665543
No 241
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=69.30 E-value=60 Score=30.88 Aligned_cols=70 Identities=11% Similarity=0.214 Sum_probs=42.9
Q ss_pred CCCchhHHHHHHHHHHCCCcEEEEeeec-CCCCC----CchHHHHHHHHHHHHhhC-CCCceeee-------eccccccc
Q 019890 156 PPDPDEPTNVAEAIASWGLDYVVITSVD-RDDLA----DQGSGHFAQTVRKLKELK-PNMLIEAL-------VAKSGLNV 222 (334)
Q Consensus 156 ~ld~~Ep~~~A~av~~~GlkeVVLTSv~-rdDl~----d~Ga~~fa~lIr~Ik~~~-P~i~vE~L-------l~~ag~dv 222 (334)
..+++++.+.|+...+.|...|-|=+.- +.+.. +...+.+..+|+.+++.. --+++... ..++|.++
T Consensus 19 ~~~~~~~~~~a~~~~~~GA~iIDIG~~st~p~~~~i~~~~E~~rl~~~v~~~~~~~~~plsiDT~~~~vi~~al~~G~~i 98 (257)
T TIGR01496 19 FLSVDKAVAHAERMLEEGADIIDVGGESTRPGADRVSPEEELNRVVPVIKALRDQPDVPISVDTYRAEVARAALEAGADI 98 (257)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEeCCCHHHHHHHHHcCCCE
Confidence 4688999999999999999999882211 11111 112335777778777642 11344333 33448888
Q ss_pred ccc
Q 019890 223 FAH 225 (334)
Q Consensus 223 ~~H 225 (334)
+||
T Consensus 99 INs 101 (257)
T TIGR01496 99 IND 101 (257)
T ss_pred EEE
Confidence 777
No 242
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=68.71 E-value=30 Score=31.46 Aligned_cols=123 Identities=10% Similarity=0.138 Sum_probs=67.9
Q ss_pred CCchhHHHHHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhCCCCceeee-----------ecccccccccc
Q 019890 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEAL-----------VAKSGLNVFAH 225 (334)
Q Consensus 157 ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~P~i~vE~L-----------l~~ag~dv~~H 225 (334)
....+|.+.|+.+.+.|++++.+..-++. ..|.....+++++|++.. ++.+.+- +.++|.|.+--
T Consensus 26 ~~~~dp~~~a~~~~~~g~d~l~v~dl~~~---~~~~~~~~~~i~~i~~~~-~~pv~~~GgI~~~e~~~~~~~~Gad~vvi 101 (234)
T cd04732 26 VYSDDPVEVAKKWEEAGAKWLHVVDLDGA---KGGEPVNLELIEEIVKAV-GIPVQVGGGIRSLEDIERLLDLGVSRVII 101 (234)
T ss_pred EECCCHHHHHHHHHHcCCCEEEEECCCcc---ccCCCCCHHHHHHHHHhc-CCCEEEeCCcCCHHHHHHHHHcCCCEEEE
Confidence 34568999999999999999988744431 111223456778787753 2222211 33445443322
Q ss_pred chhhHHHHHHhhcCCCCCHHHHHHHHHHHHHhCCC-cceEeeceEE------ec-CCCHHHHHHHHHHHHHcCCcEEeec
Q 019890 226 NIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPA-GTLTKTSIML------GC-GETPDQVVSTMEKVRAAGVDVMTFG 297 (334)
Q Consensus 226 nlETv~~l~~~Vr~r~~tye~sL~vL~~ak~~~p~-Gl~tkTgiMV------Gl-GETdEE~~etl~~Lre~gvd~vtig 297 (334)
+- ... ...+.++++.+.++. -+.+..++-. |. ..+..+..+.++.+.+.|++.+.+.
T Consensus 102 gs--------------~~l-~dp~~~~~i~~~~g~~~i~~sid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ga~~iii~ 166 (234)
T cd04732 102 GT--------------AAV-KNPELVKELLKEYGGERIVVGLDAKDGKVATKGWLETSEVSLEELAKRFEELGVKAIIYT 166 (234)
T ss_pred Cc--------------hHH-hChHHHHHHHHHcCCceEEEEEEeeCCEEEECCCeeecCCCHHHHHHHHHHcCCCEEEEE
Confidence 21 111 113344444444432 1233333221 11 3466677888999999999998886
Q ss_pred c
Q 019890 298 Q 298 (334)
Q Consensus 298 q 298 (334)
.
T Consensus 167 ~ 167 (234)
T cd04732 167 D 167 (234)
T ss_pred e
Confidence 3
No 243
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=68.46 E-value=89 Score=30.25 Aligned_cols=130 Identities=15% Similarity=0.142 Sum_probs=71.8
Q ss_pred CCchhHHHHHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhCCCCceeeeec-cccccccccchhhHHHHHH
Q 019890 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVA-KSGLNVFAHNIETVEELQS 235 (334)
Q Consensus 157 ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~P~i~vE~Ll~-~ag~dv~~HnlETv~~l~~ 235 (334)
.+.+-+..+.++..+.+.--|+.++...-++. +|...|+..++.+.+.... |.+.+. +-+. ++|.+.+..+
T Consensus 24 ~n~e~~~avi~aAe~~~~PvIl~~~~~~~~~~-~~~~~~~~~~~~~a~~~~~--vpv~lhlDH~~-----~~e~i~~ai~ 95 (282)
T TIGR01859 24 NNLEWTQAILEAAEEENSPVIIQVSEGAIKYM-GGYKMAVAMVKTLIERMSI--VPVALHLDHGS-----SYESCIKAIK 95 (282)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEEcCcchhhcc-CcHHHHHHHHHHHHHHCCC--CeEEEECCCCC-----CHHHHHHHHH
Confidence 56788888899999988777777776532221 3467788888888775421 222211 1111 2333333222
Q ss_pred h------hcCCCCCHHHHHHHHHHHHHhCC-CcceE--eeceEEecCCC---------HHHHHHHHHHHHHcCCcEEee
Q 019890 236 A------VRDHRANFKQSLDVLMMAKDYVP-AGTLT--KTSIMLGCGET---------PDQVVSTMEKVRAAGVDVMTF 296 (334)
Q Consensus 236 ~------Vr~r~~tye~sL~vL~~ak~~~p-~Gl~t--kTgiMVGlGET---------dEE~~etl~~Lre~gvd~vti 296 (334)
. ++....++++.++..+++.+... .|+.+ .-|. +| |+. -.+..+..+++++.|+|.+.+
T Consensus 96 ~Gf~sVmid~s~l~~~eni~~t~~v~~~a~~~gv~Ve~ElG~-~g-g~ed~~~g~~~~~t~~eea~~f~~~tgvD~Lav 172 (282)
T TIGR01859 96 AGFSSVMIDGSHLPFEENLALTKKVVEIAHAKGVSVEAELGT-LG-GIEDGVDEKEAELADPDEAEQFVKETGVDYLAA 172 (282)
T ss_pred cCCCEEEECCCCCCHHHHHHHHHHHHHHHHHcCCEEEEeeCC-Cc-CccccccccccccCCHHHHHHHHHHHCcCEEee
Confidence 1 12234467766655555554321 13322 2222 22 221 226777788888889999994
No 244
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=68.46 E-value=1e+02 Score=29.59 Aligned_cols=132 Identities=16% Similarity=0.154 Sum_probs=81.2
Q ss_pred CCCCchhHHHHHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhCCCCceeeeeccccccccccchhhHHHHH
Q 019890 155 PPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVAKSGLNVFAHNIETVEELQ 234 (334)
Q Consensus 155 ~~ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~P~i~vE~Ll~~ag~dv~~HnlETv~~l~ 234 (334)
..+|.+...+.++.+.+.|++-+++.|.... ......+...++++.+.+...+ .+.|+.+-
T Consensus 16 g~iD~~~l~~l~~~l~~~Gv~gi~v~GstGE-~~~Ls~eEr~~l~~~~~~~~~~----------~~pvi~gv-------- 76 (289)
T cd00951 16 GSFDEDAYRAHVEWLLSYGAAALFAAGGTGE-FFSLTPDEYAQVVRAAVEETAG----------RVPVLAGA-------- 76 (289)
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEECcCCcC-cccCCHHHHHHHHHHHHHHhCC----------CCCEEEec--------
Confidence 4689999999999999999999988775431 2222223344556555443221 12233322
Q ss_pred HhhcCCCCCHHHHHHHHHHHHHhCCCcceEeeceEEecCCCHHHHHHHHHHHHHcCCcEEeeccCcCCCCCCCcccccCC
Q 019890 235 SAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMPVSEYIT 314 (334)
Q Consensus 235 ~~Vr~r~~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGlGETdEE~~etl~~Lre~gvd~vtigqYlrP~~~h~~v~~yv~ 314 (334)
..+.++.++..+++++.--+++.+-.-.. +.-+++++.+.++.+.+. + .++|.-|-+|. ..++
T Consensus 77 ------~~~t~~~i~~a~~a~~~Gad~v~~~pP~y--~~~~~~~i~~~f~~v~~~-~-~~pi~lYn~~g-------~~l~ 139 (289)
T cd00951 77 ------GYGTATAIAYAQAAEKAGADGILLLPPYL--TEAPQEGLYAHVEAVCKS-T-DLGVIVYNRAN-------AVLT 139 (289)
T ss_pred ------CCCHHHHHHHHHHHHHhCCCEEEECCCCC--CCCCHHHHHHHHHHHHhc-C-CCCEEEEeCCC-------CCCC
Confidence 12567778888888887444333333332 245789999999999875 2 36666665443 1366
Q ss_pred HHHHHHHH
Q 019890 315 PEAFERYR 322 (334)
Q Consensus 315 P~~f~~~~ 322 (334)
|+.+.++.
T Consensus 140 ~~~l~~L~ 147 (289)
T cd00951 140 ADSLARLA 147 (289)
T ss_pred HHHHHHHH
Confidence 76666554
No 245
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=67.98 E-value=49 Score=33.63 Aligned_cols=56 Identities=18% Similarity=0.254 Sum_probs=43.3
Q ss_pred CCCHHHHHHHHHHHHHhCCCcceEeeceEEec-C-CCHHHHHHHHHHHHHcCCcEEeeccCcC
Q 019890 241 RANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC-G-ETPDQVVSTMEKVRAAGVDVMTFGQYMR 301 (334)
Q Consensus 241 ~~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGl-G-ETdEE~~etl~~Lre~gvd~vtigqYlr 301 (334)
....+.+|+.++.+|+..|+ .. +|+=+ | .+.+|+.+.++.+.+.|+|.+-++-+..
T Consensus 94 ~~g~~~~l~~i~~~k~~~~~-~p----vIaSi~~~~s~~~~~~~a~~~e~~GaD~iELNiSCP 151 (385)
T PLN02495 94 DRPFETMLAEFKQLKEEYPD-RI----LIASIMEEYNKDAWEEIIERVEETGVDALEINFSCP 151 (385)
T ss_pred ccCHHHHHHHHHHHHhhCCC-Cc----EEEEccCCCCHHHHHHHHHHHHhcCCCEEEEECCCC
Confidence 35688889888888876655 33 33445 5 7899999999999999999999985543
No 246
>PF00490 ALAD: Delta-aminolevulinic acid dehydratase; InterPro: IPR001731 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway []. The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin []. The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA. The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III. Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) []. This entry represents porphobilinogen (PBG) synthase (PBGS, or 5-aminoaevulinic acid dehydratase, or ALAD, 4.2.1.24 from EC), which functions during the second stage of tetrapyrrole biosynthesis. This enzyme catalyses a Knorr-type condensation reaction between two molecules of ALA to generate porphobilinogen, the pyrrolic building block used in later steps []. The structure of the enzyme is based on a TIM barrel topology made up of eight identical subunits, where each subunit binds to a metal ion that is essential for activity, usually zinc (in yeast, mammals and certain bacteria) or magnesium (in plants and other bacteria). A lysine has been implicated in the catalytic mechanism []. The lack of PBGS enzyme causes a rare porphyric disorder known as ALAD porphyria, which appears to involve conformational changes in the enzyme [.; GO: 0004655 porphobilinogen synthase activity, 0046872 metal ion binding, 0033014 tetrapyrrole biosynthetic process; PDB: 2C1H_A 1W1Z_A 1GZG_B 1W5O_B 1W5Q_B 2C18_A 1B4K_A 2C19_B 1W56_B 2C13_B ....
Probab=67.80 E-value=8.7 Score=38.16 Aligned_cols=124 Identities=22% Similarity=0.253 Sum_probs=69.2
Q ss_pred CCCchhHHHHHHHHHHCCCcEEEEeeecCCCCCCc-h------HHHHHHHHHHHHhhCCCCcee--ee---eccccccc-
Q 019890 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQ-G------SGHFAQTVRKLKELKPNMLIE--AL---VAKSGLNV- 222 (334)
Q Consensus 156 ~ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~-G------a~~fa~lIr~Ik~~~P~i~vE--~L---l~~ag~dv- 222 (334)
..+.+.+.++++.+.++|++.|.|=|+-.++..|. | -.-+.+.|++||+..|++.|= +. ..+.|=+-
T Consensus 53 r~sid~l~~~v~~~~~~GI~~v~lFgvi~~~~Kd~~gs~a~~~~g~v~~air~iK~~~pdl~vi~Dvclc~YT~hGHcGi 132 (324)
T PF00490_consen 53 RYSIDSLVKEVEEAVDLGIRAVILFGVIDPSKKDEEGSEAYNPDGLVQRAIRAIKKAFPDLLVITDVCLCEYTSHGHCGI 132 (324)
T ss_dssp EEEHHHHHHHHHHHHHTT--EEEEEEE-SCSC-BSS-GGGGSTTSHHHHHHHHHHHHSTTSEEEEEE-STTTBTSSSSSE
T ss_pred eeCHHHHHHHHHHHHHCCCCEEEEEeeCCcccCCcchhcccCCCChHHHHHHHHHHhCCCcEEEEecccccccCCCceEE
Confidence 46789999999999999999999999843334332 1 135678999999999996442 11 11112111
Q ss_pred ------cccchhhHHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCcceEeeceEEecCCCHHHHHHHHHHHHHcCCcEEee
Q 019890 223 ------FAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTF 296 (334)
Q Consensus 223 ------~~HnlETv~~l~~~Vr~r~~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGlGETdEE~~etl~~Lre~gvd~vti 296 (334)
.-.|-+|++.|-+. -+..|+. --+ ++--|++|=|- +...=+.|.+.|+..+.|
T Consensus 133 l~~~~g~idND~Tl~~Lak~-------------Al~~A~A-GAD-iVAPSdMMDGr------V~aIR~aLd~~g~~~v~I 191 (324)
T PF00490_consen 133 LDDEDGEIDNDETLERLAKQ-------------ALSHAEA-GAD-IVAPSDMMDGR------VGAIREALDEAGFSDVPI 191 (324)
T ss_dssp B-CTTSSBEHHHHHHHHHHH-------------HHHHHHH-T-S-EEEE-S--TTH------HHHHHHHHHHTTCTTSEE
T ss_pred EECCCCeEecHHHHHHHHHH-------------HHHHHHh-CCC-eeccccccCCH------HHHHHHHHHhCCCCCccE
Confidence 11234455555322 1223333 123 55677777663 334445566778877777
Q ss_pred ccCc
Q 019890 297 GQYM 300 (334)
Q Consensus 297 gqYl 300 (334)
-.|.
T Consensus 192 mSYs 195 (324)
T PF00490_consen 192 MSYS 195 (324)
T ss_dssp EEEE
T ss_pred Eech
Confidence 7664
No 247
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=67.63 E-value=13 Score=37.38 Aligned_cols=121 Identities=21% Similarity=0.259 Sum_probs=68.5
Q ss_pred CCCceeecCCC----CcchHHHHHHHhhcCchhhhhccCCCCCcccccCCCCCcceEEEEe-ecCCCCCCCCCcccCCCC
Q 019890 78 KPKWMKESIPG----GDKYVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMI-LGDTCTRGCRFCNVKTSR 152 (334)
Q Consensus 78 ~P~wlk~~~p~----~~~~~~~~~~l~~~~L~Tvceea~cpni~ec~~~~~~~~~Tatfm~-igdgCtr~C~FC~V~~~r 152 (334)
++.|+++++=. .---.++...|.++++-++ |..-+.-. ..+.|++ +.+.+- .++.|..+
T Consensus 41 ~~~~~giPii~AnMdTV~~~~mA~~la~~g~~~~--------iHk~~~~e----~~~~fv~~~~~~~~---~~~~vavG- 104 (346)
T PRK05096 41 GQSWSGVPIIAANMDTVGTFEMAKALASFDILTA--------VHKHYSVE----EWAAFVNNSSADVL---KHVMVSTG- 104 (346)
T ss_pred cccccCCceEecCCCccccHHHHHHHHHCCCeEE--------EecCCCHH----HHHHHHHhcccccc---ceEEEEec-
Confidence 58898765421 1223678888888887665 22211110 0122221 110111 34555322
Q ss_pred CCCCCCchhHHHHHHHHHH-CCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhCCCCceee---e-------ecccccc
Q 019890 153 APPPPDPDEPTNVAEAIAS-WGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEA---L-------VAKSGLN 221 (334)
Q Consensus 153 ~p~~ld~~Ep~~~A~av~~-~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~P~i~vE~---L-------l~~ag~d 221 (334)
..+++.++..+-++. .|++.||| |..++-..++.+.|+.||+.+|++.|=. . |.++|.|
T Consensus 105 ----~~~~d~er~~~L~~~~~g~D~ivi------D~AhGhs~~~i~~ik~ik~~~P~~~vIaGNV~T~e~a~~Li~aGAD 174 (346)
T PRK05096 105 ----TSDADFEKTKQILALSPALNFICI------DVANGYSEHFVQFVAKAREAWPDKTICAGNVVTGEMVEELILSGAD 174 (346)
T ss_pred ----CCHHHHHHHHHHHhcCCCCCEEEE------ECCCCcHHHHHHHHHHHHHhCCCCcEEEecccCHHHHHHHHHcCCC
Confidence 334565555544442 69999999 3455567889999999999999753211 1 7788888
Q ss_pred ccc
Q 019890 222 VFA 224 (334)
Q Consensus 222 v~~ 224 (334)
.+-
T Consensus 175 ~vK 177 (346)
T PRK05096 175 IVK 177 (346)
T ss_pred EEE
Confidence 753
No 248
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=67.33 E-value=41 Score=32.27 Aligned_cols=51 Identities=12% Similarity=0.162 Sum_probs=37.3
Q ss_pred CHHHHHHHHHHHHHhCCCcceEeeceEEecC-CCHHHHHHHHHHHHHcCCcEEeec
Q 019890 243 NFKQSLDVLMMAKDYVPAGTLTKTSIMLGCG-ETPDQVVSTMEKVRAAGVDVMTFG 297 (334)
Q Consensus 243 tye~sL~vL~~ak~~~p~Gl~tkTgiMVGlG-ETdEE~~etl~~Lre~gvd~vtig 297 (334)
+.++++++++.+.+..++ +.-+|+|.| .+-+|.++..+..+++|+|.+-+.
T Consensus 55 s~eEr~~~~~~~~~~~~~----~~~viagvg~~~t~~ai~~a~~a~~~Gad~v~v~ 106 (293)
T PRK04147 55 STEEKKQVLEIVAEEAKG----KVKLIAQVGSVNTAEAQELAKYATELGYDAISAV 106 (293)
T ss_pred CHHHHHHHHHHHHHHhCC----CCCEEecCCCCCHHHHHHHHHHHHHcCCCEEEEe
Confidence 457777777777776443 346788884 577888888888888888877665
No 249
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.
Probab=66.97 E-value=29 Score=33.75 Aligned_cols=54 Identities=15% Similarity=0.184 Sum_probs=37.9
Q ss_pred CCHHHHHHHHHHHHHhC--CCcceE--eeceEEecCCCHHHHHHHHHHHHHcCCcEEeec
Q 019890 242 ANFKQSLDVLMMAKDYV--PAGTLT--KTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFG 297 (334)
Q Consensus 242 ~tye~sL~vL~~ak~~~--p~Gl~t--kTgiMVGlGETdEE~~etl~~Lre~gvd~vtig 297 (334)
.+.++..+.|+.+++.. ++ +.+ +|+-.++ ++.-+|.++-.+...++|.|.+.+-
T Consensus 132 ~s~ee~~~kI~Aa~~a~~~~~-~~IiARTDa~~~-~~~~~eAi~Ra~ay~eAGAD~ifv~ 189 (285)
T TIGR02320 132 ASVEEFCGKIRAGKDAQTTED-FMIIARVESLIL-GKGMEDALKRAEAYAEAGADGIMIH 189 (285)
T ss_pred cCHHHHHHHHHHHHHhccCCC-eEEEEecccccc-cCCHHHHHHHHHHHHHcCCCEEEec
Confidence 35677788888877652 33 433 6665542 3347888888999999999999985
No 250
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=66.88 E-value=39 Score=32.87 Aligned_cols=59 Identities=15% Similarity=0.321 Sum_probs=44.1
Q ss_pred CCCHHHHHHHHHHHHHhCCCcceEeeceEEec-CCCHHHHHHHHHHHHHcCCcEEee-cc-CcCCC
Q 019890 241 RANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC-GETPDQVVSTMEKVRAAGVDVMTF-GQ-YMRPS 303 (334)
Q Consensus 241 ~~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGl-GETdEE~~etl~~Lre~gvd~vti-gq-YlrP~ 303 (334)
.-+.+++.++++.+++...+ +..+|+|. +-+-+|-++..+..+++|+|-+-+ .+ |.+|+
T Consensus 53 ~Ls~eEr~~v~~~~v~~~~g----rvpviaG~g~~~t~eai~lak~a~~~Gad~il~v~PyY~k~~ 114 (299)
T COG0329 53 TLTLEERKEVLEAVVEAVGG----RVPVIAGVGSNSTAEAIELAKHAEKLGADGILVVPPYYNKPS 114 (299)
T ss_pred hcCHHHHHHHHHHHHHHHCC----CCcEEEecCCCcHHHHHHHHHHHHhcCCCEEEEeCCCCcCCC
Confidence 35678888999999886432 44599999 555899999999999999995543 33 34555
No 251
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=66.76 E-value=40 Score=33.31 Aligned_cols=56 Identities=23% Similarity=0.388 Sum_probs=37.5
Q ss_pred HHHHHHHHHHhCCCcceEeeceE--Eec--CCCHHHHHHHHHHHHHcC-CcEEee--ccCcCC
Q 019890 247 SLDVLMMAKDYVPAGTLTKTSIM--LGC--GETPDQVVSTMEKVRAAG-VDVMTF--GQYMRP 302 (334)
Q Consensus 247 sL~vL~~ak~~~p~Gl~tkTgiM--VGl--GETdEE~~etl~~Lre~g-vd~vti--gqYlrP 302 (334)
-+++++.+|+..+..+.++.-+= -.+ |.|.+|..+.++.|.+.| +|.++| |.|..+
T Consensus 194 ~~eiv~~ir~~vg~~~~v~iRl~~~~~~~~G~~~~e~~~~~~~l~~~G~vd~i~vs~g~~~~~ 256 (343)
T cd04734 194 LLEVLAAVRAAVGPDFIVGIRISGDEDTEGGLSPDEALEIAARLAAEGLIDYVNVSAGSYYTL 256 (343)
T ss_pred HHHHHHHHHHHcCCCCeEEEEeehhhccCCCCCHHHHHHHHHHHHhcCCCCEEEeCCCCCCcc
Confidence 36788888887643243332211 111 578999999999999998 899998 445433
No 252
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=66.74 E-value=99 Score=30.04 Aligned_cols=136 Identities=18% Similarity=0.173 Sum_probs=85.6
Q ss_pred CCCCchhHHHHHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhCCCCceeeeeccccccccccchhhHHHHH
Q 019890 155 PPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVAKSGLNVFAHNIETVEELQ 234 (334)
Q Consensus 155 ~~ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~P~i~vE~Ll~~ag~dv~~HnlETv~~l~ 234 (334)
..+|.+...+.++.+.+.|++=|++-|... +......+...++++...+...+ .+-++.|-
T Consensus 24 g~iD~~~l~~lv~~li~~Gv~Gi~v~GstG-E~~~Lt~eEr~~v~~~~~~~~~g----------rvpvi~Gv-------- 84 (309)
T cd00952 24 DTVDLDETARLVERLIAAGVDGILTMGTFG-ECATLTWEEKQAFVATVVETVAG----------RVPVFVGA-------- 84 (309)
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEECcccc-cchhCCHHHHHHHHHHHHHHhCC----------CCCEEEEe--------
Confidence 468999999999999999999998866542 12222234445666666554221 23344433
Q ss_pred HhhcCCCCCHHHHHHHHHHHHHhCCCcceEeeceEEecCCCHHHHHHHHHHHHHcCCcEEeeccCcCCCCCCCcccccCC
Q 019890 235 SAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMPVSEYIT 314 (334)
Q Consensus 235 ~~Vr~r~~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGlGETdEE~~etl~~Lre~gvd~vtigqYlrP~~~h~~v~~yv~ 314 (334)
-..+.++.++..+.+.+.--+|+.+-+-... .-+++++.+.++.+.+. .+.++|.-|-.|..... -++
T Consensus 85 -----~~~~t~~ai~~a~~A~~~Gad~vlv~~P~y~--~~~~~~l~~yf~~va~a-~~~lPv~iYn~P~~tg~----~l~ 152 (309)
T cd00952 85 -----TTLNTRDTIARTRALLDLGADGTMLGRPMWL--PLDVDTAVQFYRDVAEA-VPEMAIAIYANPEAFKF----DFP 152 (309)
T ss_pred -----ccCCHHHHHHHHHHHHHhCCCEEEECCCcCC--CCCHHHHHHHHHHHHHh-CCCCcEEEEcCchhcCC----CCC
Confidence 2356788889999999874444444333322 34789999999999886 22367777777754332 344
Q ss_pred HHHHHHH
Q 019890 315 PEAFERY 321 (334)
Q Consensus 315 P~~f~~~ 321 (334)
|+.+.++
T Consensus 153 ~~~l~~L 159 (309)
T cd00952 153 RAAWAEL 159 (309)
T ss_pred HHHHHHH
Confidence 5555544
No 253
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=66.28 E-value=45 Score=32.08 Aligned_cols=50 Identities=14% Similarity=0.229 Sum_probs=34.2
Q ss_pred CHHHHHHHHHHHHHhCCCcceEeeceEEecC-CCHHHHHHHHHHHHHcCCcEEee
Q 019890 243 NFKQSLDVLMMAKDYVPAGTLTKTSIMLGCG-ETPDQVVSTMEKVRAAGVDVMTF 296 (334)
Q Consensus 243 tye~sL~vL~~ak~~~p~Gl~tkTgiMVGlG-ETdEE~~etl~~Lre~gvd~vti 296 (334)
+.+++.++++.+.+...+ +..+|+|.| -+-+|.++..+..+++|+|.+-+
T Consensus 52 t~eEr~~~~~~~~~~~~~----~~pvi~gv~~~~t~~~i~la~~a~~~Gad~v~v 102 (290)
T TIGR00683 52 STEEKKEIFRIAKDEAKD----QIALIAQVGSVNLKEAVELGKYATELGYDCLSA 102 (290)
T ss_pred CHHHHHHHHHHHHHHhCC----CCcEEEecCCCCHHHHHHHHHHHHHhCCCEEEE
Confidence 456667777766665432 345778874 67777888888888888876555
No 254
>PLN02591 tryptophan synthase
Probab=66.21 E-value=1.2e+02 Score=28.88 Aligned_cols=125 Identities=15% Similarity=0.216 Sum_probs=75.6
Q ss_pred CCCCCCCCcccCCCCC--CCCCCchhHHHHHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhCCCCceeeee
Q 019890 138 TCTRGCRFCNVKTSRA--PPPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALV 215 (334)
Q Consensus 138 gCtr~C~FC~V~~~r~--p~~ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~P~i~vE~Ll 215 (334)
|-.+++..|.-.-..+ -+.++++|.....+.+++.|+..|.|.+-+.. .+-+++|.+..++. |.+ +
T Consensus 94 G~~~F~~~~~~aGv~GviipDLP~ee~~~~~~~~~~~gl~~I~lv~Ptt~----------~~ri~~ia~~~~gF-IY~-V 161 (250)
T PLN02591 94 GIDKFMATIKEAGVHGLVVPDLPLEETEALRAEAAKNGIELVLLTTPTTP----------TERMKAIAEASEGF-VYL-V 161 (250)
T ss_pred HHHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHcCCeEEEEeCCCCC----------HHHHHHHHHhCCCc-EEE-e
Confidence 5555555554332222 13578899999999999999999999876531 24455666655553 222 1
Q ss_pred ccccccccccchhhHHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCcceEeeceEEecCCC-HHHHHHHHHHHHHcCCcEE
Q 019890 216 AKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGET-PDQVVSTMEKVRAAGVDVM 294 (334)
Q Consensus 216 ~~ag~dv~~HnlETv~~l~~~Vr~r~~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGlGET-dEE~~etl~~Lre~gvd~v 294 (334)
...|...-. ...-.+..+.++++|+. +..-+++|||=+ .|++.+ +.+.|.|-+
T Consensus 162 s~~GvTG~~----------------~~~~~~~~~~i~~vk~~------~~~Pv~vGFGI~~~e~v~~----~~~~GADGv 215 (250)
T PLN02591 162 SSTGVTGAR----------------ASVSGRVESLLQELKEV------TDKPVAVGFGISKPEHAKQ----IAGWGADGV 215 (250)
T ss_pred eCCCCcCCC----------------cCCchhHHHHHHHHHhc------CCCceEEeCCCCCHHHHHH----HHhcCCCEE
Confidence 222332111 11112233446666652 456788999877 666654 778899999
Q ss_pred eeccCc
Q 019890 295 TFGQYM 300 (334)
Q Consensus 295 tigqYl 300 (334)
-+|..+
T Consensus 216 IVGSal 221 (250)
T PLN02591 216 IVGSAM 221 (250)
T ss_pred EECHHH
Confidence 999665
No 255
>PRK09283 delta-aminolevulinic acid dehydratase; Validated
Probab=65.66 E-value=17 Score=36.12 Aligned_cols=55 Identities=25% Similarity=0.346 Sum_probs=42.6
Q ss_pred CCCCchhHHHHHHHHHHCCCcEEEEeeecCCCCCCc-hH------HHHHHHHHHHHhhCCCCce
Q 019890 155 PPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQ-GS------GHFAQTVRKLKELKPNMLI 211 (334)
Q Consensus 155 ~~ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~-Ga------~~fa~lIr~Ik~~~P~i~v 211 (334)
...+.+++.++++.+.+.|++.|.|=|+. +..|. |. .-+.+.|+.||+.+|++.|
T Consensus 54 ~r~s~d~l~~~v~~~~~~Gi~av~LFgv~--~~Kd~~gs~A~~~~g~v~rair~iK~~~p~l~v 115 (323)
T PRK09283 54 YRLSIDLLVKEAEEAVELGIPAVALFGVP--ELKDEDGSEAYNPDGLVQRAIRAIKKAFPELGV 115 (323)
T ss_pred eeeCHHHHHHHHHHHHHCCCCEEEEeCcC--CCCCcccccccCCCCHHHHHHHHHHHhCCCcEE
Confidence 35689999999999999999999999983 22221 11 2468999999999998644
No 256
>TIGR00970 leuA_yeast 2-isopropylmalate synthase, yeast type. A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases as found in yeasts and in a minority of studied bacteria.
Probab=65.04 E-value=95 Score=33.10 Aligned_cols=147 Identities=14% Similarity=0.173 Sum_probs=83.3
Q ss_pred CCCCchhHHHHHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhh---CCCCceeee--------------ecc
Q 019890 155 PPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKEL---KPNMLIEAL--------------VAK 217 (334)
Q Consensus 155 ~~ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~---~P~i~vE~L--------------l~~ 217 (334)
.+++.++=.++|+.+.++|+++|-+.-+.. ....+ +.|++|.+. .++..+-.+ +..
T Consensus 43 ~~~s~e~Ki~ia~~L~~~Gvd~IE~Gfp~~------s~~D~-e~v~~i~~~~l~~~~~~i~al~~~~~~did~a~~a~~~ 115 (564)
T TIGR00970 43 DPMSPARKRRYFDLLVRIGFKEIEVGFPSA------SQTDF-DFVREIIEQGAIPDDVTIQVLTQSREELIERTFEALSG 115 (564)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEeCCCC------CHHHH-HHHHHHHHhcCCCCCcEEEEEcCCchhhHHHHHHHhcC
Confidence 368899999999999999999998754321 12233 334444333 123445444 112
Q ss_pred ccccccccchhhHHHHH-HhhcCCCCCHHHHHHHH----HHHHHhCCCc-ceEeeceEEec-CC----CH-HHHHHHHHH
Q 019890 218 SGLNVFAHNIETVEELQ-SAVRDHRANFKQSLDVL----MMAKDYVPAG-TLTKTSIMLGC-GE----TP-DQVVSTMEK 285 (334)
Q Consensus 218 ag~dv~~HnlETv~~l~-~~Vr~r~~tye~sL~vL----~~ak~~~p~G-l~tkTgiMVGl-GE----Td-EE~~etl~~ 285 (334)
++.+.++..+-+++... ..+ +.+.++.++.+ +.+|+....+ ..+.+.+.+=| +| ++ +-+.+.++.
T Consensus 116 ~~~~~v~i~~~~Sd~h~~~~l---~~s~ee~l~~~~~~v~~ak~~~~~~~~~~~~~~~v~f~~Ed~~r~d~~~l~~~~~~ 192 (564)
T TIGR00970 116 AKRATVHFYNATSILFREVVF---RASRAEVQAIATDGTKLVRKCTKQAAKYPGTQWRFEYSPESFSDTELEFAKEVCEA 192 (564)
T ss_pred CCCCEEEEEEcCCHHHHHHHh---CCCHHHHHHHHHHHHHHHHHhcccccccccceEEEEEecccCCCCCHHHHHHHHHH
Confidence 22223444444444322 233 35566666544 4456542210 12456677788 88 64 667889999
Q ss_pred HHHcCCc------EEeeccCcCCCCCCCcccccCCHHHHHHH
Q 019890 286 VRAAGVD------VMTFGQYMRPSKRHMPVSEYITPEAFERY 321 (334)
Q Consensus 286 Lre~gvd------~vtigqYlrP~~~h~~v~~yv~P~~f~~~ 321 (334)
+.++|.+ .+.+. -+ ..+.+|+++..+
T Consensus 193 a~~ag~~~~~~~~~i~l~----DT------vG~a~P~~~~~~ 224 (564)
T TIGR00970 193 VKEVWAPTPERPIIFNLP----AT------VEMTTPNVYADS 224 (564)
T ss_pred HHHhCCCccCCeeEEEec----cc------cCccCHHHHHHH
Confidence 9999864 55442 11 237788776443
No 257
>COG0710 AroD 3-dehydroquinate dehydratase [Amino acid transport and metabolism]
Probab=64.74 E-value=1.3e+02 Score=28.56 Aligned_cols=118 Identities=22% Similarity=0.297 Sum_probs=74.1
Q ss_pred hhHHHHHHHHHHCCCc-EEEEeeecCCCCCCchH-----HHHHHHHHHHHhhC-CC-Cceeeeecc------------cc
Q 019890 160 DEPTNVAEAIASWGLD-YVVITSVDRDDLADQGS-----GHFAQTVRKLKELK-PN-MLIEALVAK------------SG 219 (334)
Q Consensus 160 ~Ep~~~A~av~~~Glk-eVVLTSv~rdDl~d~Ga-----~~fa~lIr~Ik~~~-P~-i~vE~Ll~~------------ag 219 (334)
.++.+.+.++.+.=.. .+++|=... ..||. +.+.++++++.+.+ |+ +.+|+.... .|
T Consensus 42 ~~~~~~~~~~~e~~~~~~~IfT~R~~---~EGG~~~~~~~~~i~ll~~la~~~~~d~iDiEl~~~~~~~~~~~~~~~~~~ 118 (231)
T COG0710 42 VEVLEVAKALREKDPDKPLIFTFRTV---KEGGEFPGSEEEYIELLKKLAELNGPDYIDIELSSPEDDVKEIIKFAKKHG 118 (231)
T ss_pred chHHHHHHHHHHhccCCceEEEEeeh---hhcCCCCCCHHHHHHHHHHHHhhcCCCEEEEEccCcchhHHHHHhccccCC
Confidence 4777777777665333 466664432 23332 55677888887765 55 677776111 11
Q ss_pred ccccccchhhHHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCcceEeeceEEecCCCHHHHHHHHHHHHH---cCCcEEee
Q 019890 220 LNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRA---AGVDVMTF 296 (334)
Q Consensus 220 ~dv~~HnlETv~~l~~~Vr~r~~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGlGETdEE~~etl~~Lre---~gvd~vti 296 (334)
+=+=.||.| .+...++..+.+.++.+..++ .+| |+++.++.+|++..|+..++ .+-..++|
T Consensus 119 vI~SyH~F~-----------~TP~~~~i~~~l~km~~~~aD--ivK---iAvm~~~~~DvL~ll~~~~~~~~~~~p~i~i 182 (231)
T COG0710 119 VIVSYHDFE-----------KTPPLEEIIERLDKMESLGAD--IVK---IAVMPQSKEDVLDLLEATREFKEAEKPVITI 182 (231)
T ss_pred EEEEeccCC-----------CCCcHHHHHHHHHHHHhhCCC--eEE---EEecCCCHHHHHHHHHHHHhccccCCCEEEE
Confidence 222334432 355667788888888887544 344 68889999999999999997 45555554
No 258
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=64.59 E-value=90 Score=29.13 Aligned_cols=122 Identities=14% Similarity=0.147 Sum_probs=67.2
Q ss_pred CCchhHHHHHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhCCCCceeee-----------ecccccccccc
Q 019890 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEAL-----------VAKSGLNVFAH 225 (334)
Q Consensus 157 ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~P~i~vE~L-----------l~~ag~dv~~H 225 (334)
....+|.+.|+.+...|++++.++..+++.- ++ ..-.++|++|++.. ++.+.+- +...|.+.+.-
T Consensus 27 ~~~~d~~~~a~~~~~~G~~~i~i~dl~~~~~--~~-~~~~~~i~~i~~~~-~ipv~~~GGi~s~~~~~~~l~~Ga~~Vii 102 (253)
T PRK02083 27 RDAGDPVELAKRYNEEGADELVFLDITASSE--GR-DTMLDVVERVAEQV-FIPLTVGGGIRSVEDARRLLRAGADKVSI 102 (253)
T ss_pred eecCCHHHHHHHHHHcCCCEEEEEeCCcccc--cC-cchHHHHHHHHHhC-CCCEEeeCCCCCHHHHHHHHHcCCCEEEE
Confidence 3455888899998999999999998876321 11 23457888887653 2322221 22234333322
Q ss_pred chhhHHHHHHhhcCCCCCHHHHHHHHHHHHHhCC-CcceEeeceEE-------------ecCCCHHHHHHHHHHHHHcCC
Q 019890 226 NIETVEELQSAVRDHRANFKQSLDVLMMAKDYVP-AGTLTKTSIML-------------GCGETPDQVVSTMEKVRAAGV 291 (334)
Q Consensus 226 nlETv~~l~~~Vr~r~~tye~sL~vL~~ak~~~p-~Gl~tkTgiMV-------------GlGETdEE~~etl~~Lre~gv 291 (334)
+ ...-...+.++++.+.++ +-+.+..++.- |.-.+..+..+..+.+.+.|+
T Consensus 103 g---------------t~~l~~p~~~~ei~~~~g~~~iv~slD~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~ 167 (253)
T PRK02083 103 N---------------SAAVANPELISEAADRFGSQCIVVAIDAKRDPEPGRWEVYTHGGRKPTGLDAVEWAKEVEELGA 167 (253)
T ss_pred C---------------hhHhhCcHHHHHHHHHcCCCCEEEEEEeccCCCCCCEEEEEcCCceecCCCHHHHHHHHHHcCC
Confidence 2 111112345555555543 11333333321 111344466777788889999
Q ss_pred cEEeec
Q 019890 292 DVMTFG 297 (334)
Q Consensus 292 d~vtig 297 (334)
+.+.+-
T Consensus 168 ~~ii~~ 173 (253)
T PRK02083 168 GEILLT 173 (253)
T ss_pred CEEEEc
Confidence 988764
No 259
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=64.41 E-value=75 Score=30.75 Aligned_cols=104 Identities=13% Similarity=0.155 Sum_probs=60.8
Q ss_pred CCchhHHHHHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhCCCCceeeeeccccccccccchhhHHHHHHh
Q 019890 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVAKSGLNVFAHNIETVEELQSA 236 (334)
Q Consensus 157 ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~P~i~vE~Ll~~ag~dv~~HnlETv~~l~~~ 236 (334)
.+++...+.++.+.+.|.+.|.|-=- ..-.....+.++|+.|++..|++. +.+=.||-
T Consensus 152 ~~~~~~~~~~~~~~~~G~d~i~l~DT----~G~~~P~~v~~lv~~l~~~~~~~~---------i~~H~Hn~--------- 209 (287)
T PRK05692 152 VPPEAVADVAERLFALGCYEISLGDT----IGVGTPGQVRAVLEAVLAEFPAER---------LAGHFHDT--------- 209 (287)
T ss_pred CCHHHHHHHHHHHHHcCCcEEEeccc----cCccCHHHHHHHHHHHHHhCCCCe---------EEEEecCC---------
Confidence 56888888888888888888777211 111224677888888887665432 23344551
Q ss_pred hcCCCCCHHHHHHHHHHHHHhCCCcceEeeceEEecCC--------CHHHHHHHHHHHHHcCCc
Q 019890 237 VRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGE--------TPDQVVSTMEKVRAAGVD 292 (334)
Q Consensus 237 Vr~r~~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGlGE--------TdEE~~etl~~Lre~gvd 292 (334)
.+-....+|.-++ . |+..=-+=+-|+|| -.-..++++..|+..|++
T Consensus 210 ---~Gla~AN~laA~~---a----G~~~id~s~~GlGecpfa~g~aGN~~~E~lv~~L~~~g~~ 263 (287)
T PRK05692 210 ---YGQALANIYASLE---E----GITVFDASVGGLGGCPYAPGASGNVATEDVLYMLHGLGIE 263 (287)
T ss_pred ---CCcHHHHHHHHHH---h----CCCEEEEEccccCCCCCCCCccccccHHHHHHHHHhcCCC
Confidence 2223333333322 2 55555556688888 245566666666665554
No 260
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=63.92 E-value=52 Score=31.46 Aligned_cols=50 Identities=20% Similarity=0.208 Sum_probs=35.9
Q ss_pred CCHHHHHHHHHHHHHhCCCcceEeeceEEecCCCHHHHHHHHHHHHHcCCcEEeec
Q 019890 242 ANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFG 297 (334)
Q Consensus 242 ~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGlGETdEE~~etl~~Lre~gvd~vtig 297 (334)
.+.+...++++.+|+...--+.+|. .-+.+|..+..+.|.+.|+|.+++.
T Consensus 140 ~~~~~~~eiv~~vr~~~~~pv~vKi------~~~~~~~~~~a~~l~~~G~d~i~v~ 189 (300)
T TIGR01037 140 QDPELSADVVKAVKDKTDVPVFAKL------SPNVTDITEIAKAAEEAGADGLTLI 189 (300)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEC------CCChhhHHHHHHHHHHcCCCEEEEE
Confidence 3567778889988875321123343 3356788999999999999999974
No 261
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=63.86 E-value=1.6e+02 Score=29.12 Aligned_cols=61 Identities=13% Similarity=0.107 Sum_probs=41.2
Q ss_pred CCCCHHHHHHHHHHHHHhCCCcceEeeceEE----------ecC-CCHHHHHHHHHHHHHcCCcEEeeccCcC
Q 019890 240 HRANFKQSLDVLMMAKDYVPAGTLTKTSIML----------GCG-ETPDQVVSTMEKVRAAGVDVMTFGQYMR 301 (334)
Q Consensus 240 r~~tye~sL~vL~~ak~~~p~Gl~tkTgiMV----------GlG-ETdEE~~etl~~Lre~gvd~vtigqYlr 301 (334)
+..+.+.+.+.++.+.+..|+.+ .-..+++ .-| +.++.+....+.|.+.|+....+..|.+
T Consensus 160 Pgqt~~~~~~~l~~~~~l~~~~i-s~y~L~~~~gT~l~~~~~~~~~~~~~~~~~~~~l~~~Gy~~yeis~fa~ 231 (350)
T PRK08446 160 PLDNKKLLKEELKLAKELPINHL-SAYSLTIEENTPFFEKNHKKKDDENLAKFFIEQLEELGFKQYEISNFGK 231 (350)
T ss_pred CCCCHHHHHHHHHHHHhcCCCEE-EeccceecCCChhHHhhhcCCCHHHHHHHHHHHHHHCCCcEEEeehhhC
Confidence 46788888888888888777632 2222333 112 2244566678889999999988888876
No 262
>PRK12999 pyruvate carboxylase; Reviewed
Probab=63.26 E-value=68 Score=37.18 Aligned_cols=136 Identities=18% Similarity=0.189 Sum_probs=83.3
Q ss_pred CCCchhHHHHHHHHHHC--CCcEEEEeeecCCCCC--CchHHHHHHHHHHHHhhCCCCceeeeecccccccccc---chh
Q 019890 156 PPDPDEPTNVAEAIASW--GLDYVVITSVDRDDLA--DQGSGHFAQTVRKLKELKPNMLIEALVAKSGLNVFAH---NIE 228 (334)
Q Consensus 156 ~ld~~Ep~~~A~av~~~--GlkeVVLTSv~rdDl~--d~Ga~~fa~lIr~Ik~~~P~i~vE~Ll~~ag~dv~~H---nlE 228 (334)
.++.++...+|+++.+. |+..+=+.|+..-|.. --.... .+-++.|++..|++.+..|+..+.+=-|.| |+.
T Consensus 551 r~~~~d~l~ia~~l~~~~~g~~siE~~ggatfd~~~r~l~e~p-~erl~~~r~~~~~~~~q~l~Rg~n~vgy~~yp~~v~ 629 (1146)
T PRK12999 551 RVRTKDLLRIAPATARLLPNLFSLEMWGGATFDVAYRFLKEDP-WERLAELREAAPNVLFQMLLRGSNAVGYTNYPDNVV 629 (1146)
T ss_pred cCCHHHHHHHHHHHHHHhCCCCEEEeeCCcchhhhccccCCCH-HHHHHHHHHhCCCCeEEEEecccccccccCCCchHH
Confidence 47899999999999999 9999988876431110 000111 367888888889988777744433323333 321
Q ss_pred -h-HHHHHHh----hc--CCCCCHHHHHHHHHHHHHhCCCcceEeeceEEec-C---------CCHHHHHHHHHHHHHcC
Q 019890 229 -T-VEELQSA----VR--DHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC-G---------ETPDQVVSTMEKVRAAG 290 (334)
Q Consensus 229 -T-v~~l~~~----Vr--~r~~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGl-G---------ETdEE~~etl~~Lre~g 290 (334)
- ++..... +| +.....+.....++.+|+. |. ...+.+++ | -|.+-+.+..+.|.++|
T Consensus 630 ~~~i~~a~~~Gid~~rifd~lnd~~~~~~~i~~vk~~---g~--~~~~~i~ytg~~~d~~~~~~~~~~~~~~a~~l~~~G 704 (1146)
T PRK12999 630 RAFVREAAAAGIDVFRIFDSLNWVENMRVAIDAVRET---GK--IAEAAICYTGDILDPARAKYDLDYYVDLAKELEKAG 704 (1146)
T ss_pred HHHHHHHHHcCCCEEEEeccCChHHHHHHHHHHHHHc---CC--eEEEEEEEEecCCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 1 2211111 11 1223345555666777765 33 22344455 4 37888899999999999
Q ss_pred CcEEeec
Q 019890 291 VDVMTFG 297 (334)
Q Consensus 291 vd~vtig 297 (334)
+|++.|-
T Consensus 705 a~~i~ik 711 (1146)
T PRK12999 705 AHILAIK 711 (1146)
T ss_pred CCEEEEC
Confidence 9999874
No 263
>COG0502 BioB Biotin synthase and related enzymes [Coenzyme metabolism]
Probab=63.15 E-value=3.1 Score=41.44 Aligned_cols=33 Identities=30% Similarity=0.537 Sum_probs=26.7
Q ss_pred CCCcccCCCCCCCCCCchhHHHHHHHHH-HCCCcE
Q 019890 143 CRFCNVKTSRAPPPPDPDEPTNVAEAIA-SWGLDY 176 (334)
Q Consensus 143 C~FC~V~~~r~p~~ld~~Ep~~~A~av~-~~Glke 176 (334)
=+||.+..+++ ...+.+++.+.+++++ ++|+.-
T Consensus 102 ~r~c~~aagr~-~~~~~~~i~~~v~~Vk~~~~le~ 135 (335)
T COG0502 102 TRFCMGAAGRG-PGRDMEEVVEAIKAVKEELGLEV 135 (335)
T ss_pred ceEEEEEeccC-CCccHHHHHHHHHHHHHhcCcHH
Confidence 36899998886 5688999999999998 778553
No 264
>COG3246 Uncharacterized conserved protein [Function unknown]
Probab=62.84 E-value=54 Score=32.32 Aligned_cols=57 Identities=16% Similarity=0.216 Sum_probs=42.6
Q ss_pred CCCCchhHHHHHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhCCCCce
Q 019890 155 PPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLI 211 (334)
Q Consensus 155 ~~ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~P~i~v 211 (334)
.|+.|+|+.+.|.++.+.|..-+.|--...|--+....+.|.+++..||+.++++-+
T Consensus 24 lP~TP~qIA~~a~~aa~AGAai~HlHvRp~dG~pt~d~~~yr~~l~rIr~~~~D~vi 80 (298)
T COG3246 24 LPVTPDQIASDAIAAAKAGAAILHLHVRPEDGRPTLDPEAYREVLERIRAAVGDAVI 80 (298)
T ss_pred CCCCHHHHHHHHHHHHhcCcceEEEEecCCCCCcccCHHHHHHHHHHHHccCCCeEE
Confidence 478999999999999999987666643322223445578899999999998766433
No 265
>PLN02417 dihydrodipicolinate synthase
Probab=62.78 E-value=59 Score=31.08 Aligned_cols=49 Identities=10% Similarity=0.205 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHhCCCcceEeeceEEecC-CCHHHHHHHHHHHHHcCCcEEee
Q 019890 244 FKQSLDVLMMAKDYVPAGTLTKTSIMLGCG-ETPDQVVSTMEKVRAAGVDVMTF 296 (334)
Q Consensus 244 ye~sL~vL~~ak~~~p~Gl~tkTgiMVGlG-ETdEE~~etl~~Lre~gvd~vti 296 (334)
.+++.++++.+.+...+ +.-+|+|.| .+-+|.++..+..+++|+|.+-+
T Consensus 53 ~~Er~~~~~~~~~~~~~----~~pvi~gv~~~~t~~~i~~a~~a~~~Gadav~~ 102 (280)
T PLN02417 53 WDEHIMLIGHTVNCFGG----KIKVIGNTGSNSTREAIHATEQGFAVGMHAALH 102 (280)
T ss_pred HHHHHHHHHHHHHHhCC----CCcEEEECCCccHHHHHHHHHHHHHcCCCEEEE
Confidence 34444455544443222 234555553 34555555555555666554433
No 266
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=62.50 E-value=17 Score=33.08 Aligned_cols=134 Identities=15% Similarity=0.217 Sum_probs=66.3
Q ss_pred hhHHHHHHHHHHCCCcEEEEeeecCCCCCCc----hHHHHHHHHHHHHhhCCCCceeee-eccccccccccchhhHHHHH
Q 019890 160 DEPTNVAEAIASWGLDYVVITSVDRDDLADQ----GSGHFAQTVRKLKELKPNMLIEAL-VAKSGLNVFAHNIETVEELQ 234 (334)
Q Consensus 160 ~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~----Ga~~fa~lIr~Ik~~~P~i~vE~L-l~~ag~dv~~HnlETv~~l~ 234 (334)
.-=..+|+++...|..=++++|-..-+.|.+ ......++.+++.+..++. .++ +.+|-.|+....... ..+-
T Consensus 30 ~~G~~lA~~~~~~Ga~V~li~g~~~~~~p~~~~~i~v~sa~em~~~~~~~~~~~--Di~I~aAAVsDf~p~~~~~-~KIk 106 (185)
T PF04127_consen 30 KMGAALAEEAARRGAEVTLIHGPSSLPPPPGVKVIRVESAEEMLEAVKELLPSA--DIIIMAAAVSDFRPEEPAE-GKIK 106 (185)
T ss_dssp HHHHHHHHHHHHTT-EEEEEE-TTS----TTEEEEE-SSHHHHHHHHHHHGGGG--SEEEE-SB--SEEESCHHS-S-G-
T ss_pred HHHHHHHHHHHHCCCEEEEEecCccccccccceEEEecchhhhhhhhccccCcc--eeEEEecchhheeehhccc-cccc
Confidence 3457888999999987666666532122321 1233455555555544433 222 233333433322100 0010
Q ss_pred Hh-hcCCCCCHHHHHHHHHHHH-HhCCCcceEeeceEEec-CCCHHHHHHHHHHHHHcCCcEEeeccCcCC
Q 019890 235 SA-VRDHRANFKQSLDVLMMAK-DYVPAGTLTKTSIMLGC-GETPDQVVSTMEKVRAAGVDVMTFGQYMRP 302 (334)
Q Consensus 235 ~~-Vr~r~~tye~sL~vL~~ak-~~~p~Gl~tkTgiMVGl-GETdEE~~etl~~Lre~gvd~vtigqYlrP 302 (334)
+. -..-.-...+.-++|..++ ...|+ .++||| =||++.+....+.|++-++|.|-.+...++
T Consensus 107 K~~~~~l~l~L~~~pkIL~~l~~~~~~~------~~lVGFkaEt~~l~~~A~~kl~~k~~D~IVaN~~~~~ 171 (185)
T PF04127_consen 107 KSSGDELTLELKPTPKILAELRKNKKPN------QFLVGFKAETEELIENAKEKLERKGADLIVANDLSQR 171 (185)
T ss_dssp --TT-CEEEEEEE-GGHGCCHHHHCSTT------TEEEEEEEESCHHHHHHHHHHHHCT-SEEEEEEGCCC
T ss_pred cccCcceEEEEEeChHHHHHHHhcccCC------cEEEEEEecCCcHHHHHHHHhHhhCCCEEEEeCCCcC
Confidence 00 0000011222234555553 33343 368999 899888889999999999999999876655
No 267
>KOG2599 consensus Pyridoxal/pyridoxine/pyridoxamine kinase [Coenzyme transport and metabolism]
Probab=62.34 E-value=1e+02 Score=30.38 Aligned_cols=122 Identities=20% Similarity=0.256 Sum_probs=78.6
Q ss_pred CCCchhHHHHHHHHHHCCC-cE-EEEeeecCCCCCCch-HHHHHHHHHHHHhhCCCCceeee---eccccccccccchhh
Q 019890 156 PPDPDEPTNVAEAIASWGL-DY-VVITSVDRDDLADQG-SGHFAQTVRKLKELKPNMLIEAL---VAKSGLNVFAHNIET 229 (334)
Q Consensus 156 ~ld~~Ep~~~A~av~~~Gl-ke-VVLTSv~rdDl~d~G-a~~fa~lIr~Ik~~~P~i~vE~L---l~~ag~dv~~HnlET 229 (334)
.+..+|+.+..+.+....+ +| .||||-- ++-. ...++++++++|+.+|++ +-++ +-|.|-=... |-
T Consensus 61 ~~~~~eL~dL~egl~~nn~~~Y~~vLTGY~----~n~~~l~~i~~iv~~lk~~np~~-~wv~DPVmGDnG~lYV~---ee 132 (308)
T KOG2599|consen 61 VLNEEELEDLYEGLLLNNLNKYDAVLTGYL----PNVSFLQKIADIVKKLKKKNPNL-TWVCDPVMGDNGRLYVP---EE 132 (308)
T ss_pred ccCHHHHHHHHHHHhhccccccceeeeecc----CChhHHHHHHHHHHHHHhcCCCe-EEEeCccccCCccEecc---HH
Confidence 5789999999998877543 44 5788853 3323 255789999999999984 2233 3344322222 12
Q ss_pred HHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCcceEeeceEEec-CCCHHHHHHHHHHHHHcCCcEEeeccC
Q 019890 230 VEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC-GETPDQVVSTMEKVRAAGVDVMTFGQY 299 (334)
Q Consensus 230 v~~l~~~Vr~r~~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGl-GETdEE~~etl~~Lre~gvd~vtigqY 299 (334)
+-.+|+.+-.+ .|--+-|+ ..-..++.|+ -+|.||..+.++.|.+.++..+-|-.+
T Consensus 133 lipvYr~~i~~------------ladiiTPN--qFE~EiLtg~~I~t~eda~~a~~~lhq~~v~~vVITS~ 189 (308)
T KOG2599|consen 133 LIPVYRDLIIP------------LADIITPN--QFEAEILTGMEIRTEEDAKRAVEKLHQKGVKTVVITSF 189 (308)
T ss_pred HHHHHHHhhcc------------hhhhcCCc--chhhhhhcCCeeccHHHHHHHHHHHHHhCCCEEEEEee
Confidence 23344443311 11123466 3567889999 999999999999999999886655433
No 268
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=62.12 E-value=1.3e+02 Score=28.31 Aligned_cols=120 Identities=11% Similarity=0.123 Sum_probs=68.3
Q ss_pred chhHHHHHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhCCCCceeee-----------eccccccccccch
Q 019890 159 PDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEAL-----------VAKSGLNVFAHNI 227 (334)
Q Consensus 159 ~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~P~i~vE~L-----------l~~ag~dv~~Hnl 227 (334)
..+|.+.|+.+.+.|++++.+|=.+++.- ..| .-.++|++|.+. +++.+.+- +.+.|.+.+--|-
T Consensus 29 ~~dp~~~a~~~~~~g~~~l~i~Dl~~~~~-~~~--~n~~~i~~i~~~-~~~pv~~gGGi~s~~d~~~l~~~G~~~vvigs 104 (258)
T PRK01033 29 IGDPINAVRIFNEKEVDELIVLDIDASKR-GSE--PNYELIENLASE-CFMPLCYGGGIKTLEQAKKIFSLGVEKVSINT 104 (258)
T ss_pred CCCHHHHHHHHHHcCCCEEEEEECCCCcC-CCc--ccHHHHHHHHHh-CCCCEEECCCCCCHHHHHHHHHCCCCEEEECh
Confidence 34889999999999999999988876421 112 235777777764 23333221 2233443333231
Q ss_pred hhHHHHHHhhcCCCCCHHHHHHHHHHHHHhCCC-cceEeeceEEec------------CCCHHHHHHHHHHHHHcCCcEE
Q 019890 228 ETVEELQSAVRDHRANFKQSLDVLMMAKDYVPA-GTLTKTSIMLGC------------GETPDQVVSTMEKVRAAGVDVM 294 (334)
Q Consensus 228 ETv~~l~~~Vr~r~~tye~sL~vL~~ak~~~p~-Gl~tkTgiMVGl------------GETdEE~~etl~~Lre~gvd~v 294 (334)
+.++ ..++++.+.+.++. -+.+.-++=-|. -.++.+..+.++.+.+.|++.+
T Consensus 105 --------------~~~~-~~~~~~~~~~~~~~~~i~vsiD~k~g~~~~~~v~~~gw~~~~~~~~~e~~~~~~~~g~~~i 169 (258)
T PRK01033 105 --------------AALE-DPDLITEAAERFGSQSVVVSIDVKKNLGGKFDVYTHNGTKKLKKDPLELAKEYEALGAGEI 169 (258)
T ss_pred --------------HHhc-CHHHHHHHHHHhCCCcEEEEEEEecCCCCcEEEEEcCCeecCCCCHHHHHHHHHHcCCCEE
Confidence 1111 13445555444431 133333332221 1355667888899999999988
Q ss_pred eec
Q 019890 295 TFG 297 (334)
Q Consensus 295 tig 297 (334)
.+-
T Consensus 170 i~~ 172 (258)
T PRK01033 170 LLN 172 (258)
T ss_pred EEE
Confidence 875
No 269
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=61.87 E-value=1.2e+02 Score=30.06 Aligned_cols=134 Identities=15% Similarity=0.222 Sum_probs=80.9
Q ss_pred CCCchhHHHHHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhC-CCCceeee--------------eccccc
Q 019890 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELK-PNMLIEAL--------------VAKSGL 220 (334)
Q Consensus 156 ~ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~-P~i~vE~L--------------l~~ag~ 220 (334)
..+++++.+.++.+.+.|.+.|.|. | -..-.-...+.++|++|++.. |++.+++= ..++|.
T Consensus 140 ~~~~e~l~~~a~~~~~~Ga~~i~i~--D--T~G~~~P~~v~~~v~~l~~~l~~~i~ig~H~HnnlGla~ANslaAi~aGa 215 (337)
T PRK08195 140 MAPPEKLAEQAKLMESYGAQCVYVV--D--SAGALLPEDVRDRVRALRAALKPDTQVGFHGHNNLGLGVANSLAAVEAGA 215 (337)
T ss_pred CCCHHHHHHHHHHHHhCCCCEEEeC--C--CCCCCCHHHHHHHHHHHHHhcCCCCeEEEEeCCCcchHHHHHHHHHHhCC
Confidence 3578999999999999999988772 1 111222467899999999876 56655442 345565
Q ss_pred cccc----------cc--hhhHHHHHHhh-cCCCCCHHHHHHHHHHHHHhCCC-c-ceEeeceEEec-CCCHHHHHHHHH
Q 019890 221 NVFA----------HN--IETVEELQSAV-RDHRANFKQSLDVLMMAKDYVPA-G-TLTKTSIMLGC-GETPDQVVSTME 284 (334)
Q Consensus 221 dv~~----------Hn--lETv~~l~~~V-r~r~~tye~sL~vL~~ak~~~p~-G-l~tkTgiMVGl-GETdEE~~etl~ 284 (334)
+++. -| +|.+-.++.++ .+.+.+.++.+++.+.+-.-... - ..-..++++|+ |=--....-.-+
T Consensus 216 ~~iD~Sl~GlG~~aGN~~tE~lv~~L~~~g~~tgidl~~l~~~a~~~~~p~~~~~~~~~~~~~~~g~ag~~s~~~~~~~~ 295 (337)
T PRK08195 216 TRIDGSLAGLGAGAGNTPLEVLVAVLDRMGWETGVDLYKLMDAAEDLVRPLMDRPVRVDREALTLGYAGVYSSFLLHAER 295 (337)
T ss_pred CEEEecChhhcccccCccHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhhhccCCCCCCHHHHhhhhcccchhhHHHHHH
Confidence 5432 23 45443344443 12467777777777766442211 0 11155778888 655555555555
Q ss_pred HHHHcCCcE
Q 019890 285 KVRAAGVDV 293 (334)
Q Consensus 285 ~Lre~gvd~ 293 (334)
..++.|+|.
T Consensus 296 ~~~~~~~~~ 304 (337)
T PRK08195 296 AAERYGVDA 304 (337)
T ss_pred HHHHhCCCH
Confidence 566666663
No 270
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=61.29 E-value=41 Score=33.31 Aligned_cols=50 Identities=16% Similarity=0.390 Sum_probs=35.0
Q ss_pred HHHHHHHHHhCCCcceEeeceEEec----------CCCHHHHHHHHHHHHHcCCcEEeeccC
Q 019890 248 LDVLMMAKDYVPAGTLTKTSIMLGC----------GETPDQVVSTMEKVRAAGVDVMTFGQY 299 (334)
Q Consensus 248 L~vL~~ak~~~p~Gl~tkTgiMVGl----------GETdEE~~etl~~Lre~gvd~vtigqY 299 (334)
+++++.+|+..+. ....++.||+ |-|.+|..+.++.|.+.|+|.+++...
T Consensus 198 ~eii~~vr~~vg~--~~~~~~~v~~R~s~~~~~~~g~~~ee~~~i~~~L~~~GvD~I~Vs~g 257 (353)
T cd04735 198 LAVVKAVQEVIDK--HADKDFILGYRFSPEEPEEPGIRMEDTLALVDKLADKGLDYLHISLW 257 (353)
T ss_pred HHHHHHHHHHhcc--ccCCCceEEEEECcccccCCCCCHHHHHHHHHHHHHcCCCEEEeccC
Confidence 5777888876641 0112223332 667899999999999999999998753
No 271
>PF02875 Mur_ligase_C: Mur ligase family, glutamate ligase domain This Prosite entry is a subset of the Pfam family.; InterPro: IPR004101 The bacterial cell wall provides strength and rigidity to counteract internal osmotic pressure, and protection against the environment. The peptidoglycan layer gives the cell wall its strength, and helps maintain the overall shape of the cell. The basic peptidoglycan structure of both Gram-positive and Gram-negative bacteria is comprised of a sheet of glycan chains connected by short cross-linking polypeptides. Biosynthesis of peptidoglycan is a multi-step (11-12 steps) process comprising three main stages: (1) formation of UDP-N-acetylmuramic acid (UDPMurNAc) from N-acetylglucosamine (GlcNAc). (2) addition of a short polypeptide chain to the UDPMurNAc. (3) addition of a second GlcNAc to the disaccharide-pentapeptide building block and transport of this unit through the cytoplasmic membrane and incorporation into the growing peptidoglycan layer. Stage two involves four key Mur ligase enzymes: MurC (6.3.2.8 from EC) [], MurD (6.3.2.9 from EC) [], MurE (6.3.2.13 from EC) [] and MurF (6.3.2.10 from EC) []. These four Mur ligases are responsible for the successive additions of L-alanine, D-glutamate, meso-diaminopimelate or L-lysine, and D-alanyl-D-alanine to UDP-N-acetylmuramic acid. All four Mur ligases are topologically similar to one another, even though they display low sequence identity. They are each composed of three domains: an N-terminal Rossmann-fold domain responsible for binding the UDPMurNAc substrate; a central domain (similar to ATP-binding domains of several ATPases and GTPases); and a C-terminal domain (similar to dihydrofolate reductase fold) that appears to be associated with binding the incoming amino acid. The conserved sequence motifs found in the four Mur enzymes also map to other members of the Mur ligase family, including folylpolyglutamate synthetase, cyanophycin synthetase and the capB enzyme from Bacillales []. This entry represents the C-terminal domain from all four stage 2 Mur enzymes: UDP-N-acetylmuramate-L-alanine ligase (MurC), UDP-N-acetylmuramoylalanine-D-glutamate ligase (MurD), UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase (MurE), and UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase (MurF). This entry also includes the C-terminal domain of folylpolyglutamate synthase that transfers glutamate to folylpolyglutamate and cyanophycin synthetase that catalyses the biosynthesis of the cyanobacterial reserve material multi-L-arginyl-poly-L-aspartate (cyanophycin) []. The C-terminal domain is almost always associated with the cytoplasmic peptidoglycan synthetases, N-terminal domain (see IPR000713 from INTERPRO).; GO: 0005524 ATP binding, 0016874 ligase activity, 0009058 biosynthetic process; PDB: 2Y68_A 3UAG_A 4UAG_A 2UAG_A 1E0D_A 2XPC_A 2WJP_A 2VTE_A 2Y67_A 1EEH_A ....
Probab=61.26 E-value=35 Score=26.52 Aligned_cols=59 Identities=20% Similarity=0.409 Sum_probs=33.6
Q ss_pred ccccccchhhHHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCcceEeeceEEe-cCC---CHHHHHHHHHHHHHc-CCcEE
Q 019890 220 LNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLG-CGE---TPDQVVSTMEKVRAA-GVDVM 294 (334)
Q Consensus 220 ~dv~~HnlETv~~l~~~Vr~r~~tye~sL~vL~~ak~~~p~Gl~tkTgiMVG-lGE---TdEE~~etl~~Lre~-gvd~v 294 (334)
.| |+||.+.+..++..++ +..+++ +--+++| ++| -+.++...+..+... ....+
T Consensus 18 ~D-~ahNp~s~~a~l~~l~-----------------~~~~~~---~~i~V~G~~~d~g~~~~~~~~~~~~~~~~~~d~vi 76 (91)
T PF02875_consen 18 DD-YAHNPDSIRALLEALK-----------------ELYPKG---RIIAVFGAMGDLGSKDKDFHEEIGELAAQLADVVI 76 (91)
T ss_dssp EE-T--SHHHHHHHHHHHH-----------------HHCTTS---EEEEEEEEBTT-HTSHHHCHHHHHHHHTTCSSEEE
T ss_pred EE-CCCCHHHHHHHHHHHH-----------------HhccCC---cEEEEEccccccccccHHHHHHHHHHHHhcCCEEE
Confidence 36 8999776666655544 333332 4556777 356 777777777776666 44444
Q ss_pred eeccC
Q 019890 295 TFGQY 299 (334)
Q Consensus 295 tigqY 299 (334)
..+.+
T Consensus 77 ~~~~~ 81 (91)
T PF02875_consen 77 LTGDN 81 (91)
T ss_dssp EETSB
T ss_pred EcCCC
Confidence 44544
No 272
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=61.12 E-value=1.9e+02 Score=29.10 Aligned_cols=49 Identities=14% Similarity=0.239 Sum_probs=34.7
Q ss_pred CCCchhHHHHHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhCCC
Q 019890 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPN 208 (334)
Q Consensus 156 ~ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~P~ 208 (334)
..+++.+.+.++.+.+.|.+.|.|-= -..-.-...+.++|++|++..|.
T Consensus 193 r~~~~~l~~~~~~~~~~Gad~I~l~D----T~G~a~P~~v~~lv~~l~~~~~~ 241 (347)
T PLN02746 193 PVPPSKVAYVAKELYDMGCYEISLGD----TIGVGTPGTVVPMLEAVMAVVPV 241 (347)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEecC----CcCCcCHHHHHHHHHHHHHhCCC
Confidence 36788999999999999999887721 11111246788888888876553
No 273
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=60.64 E-value=86 Score=29.80 Aligned_cols=45 Identities=24% Similarity=0.428 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHhCCCcceEeeceEEecCCC-HHHHHHHHHHHHHcCCcEEeeccCc
Q 019890 246 QSLDVLMMAKDYVPAGTLTKTSIMLGCGET-PDQVVSTMEKVRAAGVDVMTFGQYM 300 (334)
Q Consensus 246 ~sL~vL~~ak~~~p~Gl~tkTgiMVGlGET-dEE~~etl~~Lre~gvd~vtigqYl 300 (334)
..++.++++|+.. ..-++||||=+ .|++. .+.+.|.|.+-+|..+
T Consensus 185 ~~~~~i~~lr~~~------~~pi~vgfGI~~~e~~~----~~~~~GADgvVvGSai 230 (256)
T TIGR00262 185 ALNELVKRLKAYS------AKPVLVGFGISKPEQVK----QAIDAGADGVIVGSAI 230 (256)
T ss_pred hHHHHHHHHHhhc------CCCEEEeCCCCCHHHHH----HHHHcCCCEEEECHHH
Confidence 3466677777642 33699999886 66554 5788999999999765
No 274
>COG1856 Uncharacterized homolog of biotin synthetase [Function unknown]
Probab=60.46 E-value=69 Score=30.80 Aligned_cols=53 Identities=23% Similarity=0.266 Sum_probs=41.8
Q ss_pred CCCCHHHHHHHHHHHHHhCCCcceEeeceEEecCCCHHHHHHHHHHHHHcCCcEEeec
Q 019890 240 HRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFG 297 (334)
Q Consensus 240 r~~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGlGETdEE~~etl~~Lre~gvd~vtig 297 (334)
+.-+.++.+++++.||+.+|+ .+.-|-|==+||..-++ =+++..+|+|.++..
T Consensus 200 ~pp~~eE~i~v~~~AR~~f~~--pv~iGCmrP~Ge~rvk~---d~~av~~gVd~It~P 252 (275)
T COG1856 200 PPPPVEEAIKVVKYARKKFPN--PVSIGCMRPRGEWRVKL---DKEAVLAGVDRITFP 252 (275)
T ss_pred CCcCHHHHHHHHHHHHHhCCC--CeeEeecCcCchhHHHH---HHHHHHcCCceeecC
Confidence 467899999999999999987 45556666668876555 467788999999874
No 275
>PRK08207 coproporphyrinogen III oxidase; Provisional
Probab=60.37 E-value=1e+02 Score=32.29 Aligned_cols=133 Identities=14% Similarity=0.178 Sum_probs=70.8
Q ss_pred CCCCCchhHHHHHHHHHHC-----CCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhCCC-Cceeee-ecccccccc--c
Q 019890 154 PPPPDPDEPTNVAEAIASW-----GLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPN-MLIEAL-VAKSGLNVF--A 224 (334)
Q Consensus 154 p~~ld~~Ep~~~A~av~~~-----GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~P~-i~vE~L-l~~ag~dv~--~ 224 (334)
|..++++++.++.+.+.+. +++++.+.+++.|.+. .+.++.+++..-. +++-+. +.+.-++.+ .
T Consensus 229 Pt~L~~~~L~~Ll~~i~~~f~~~~~~~EiTvE~grPd~it-------~e~L~~Lk~~Gv~RISIGvQS~~d~vLk~igR~ 301 (488)
T PRK08207 229 PTSLTAEELERLLEEIYENFPDVKNVKEFTVEAGRPDTIT-------EEKLEVLKKYGVDRISINPQTMNDETLKAIGRH 301 (488)
T ss_pred ccCCCHHHHHHHHHHHHHhccccCCceEEEEEcCCCCCCC-------HHHHHHHHhcCCCeEEEcCCcCCHHHHHHhCCC
Confidence 4457888888888887653 3456677665544442 2455556553111 222222 111111221 2
Q ss_pred cchhhHHHHHHhhcC--------------CCCCHHHHHHHHHHHHHhCCCcceEeeceEE----------ec------CC
Q 019890 225 HNIETVEELQSAVRD--------------HRANFKQSLDVLMMAKDYVPAGTLTKTSIML----------GC------GE 274 (334)
Q Consensus 225 HnlETv~~l~~~Vr~--------------r~~tye~sL~vL~~ak~~~p~Gl~tkTgiMV----------Gl------GE 274 (334)
|..+.+.+.+..++. ++.+.++..+.++.+.+..|+.+.+-+ +.+ +- .|
T Consensus 302 ht~e~v~~ai~~ar~~Gf~~In~DLI~GLPgEt~ed~~~tl~~l~~L~pd~isv~~-L~i~~gT~l~~~~~~~~~~~~~~ 380 (488)
T PRK08207 302 HTVEDIIEKFHLAREMGFDNINMDLIIGLPGEGLEEVKHTLEEIEKLNPESLTVHT-LAIKRASRLTENKEKYKVADREE 380 (488)
T ss_pred CCHHHHHHHHHHHHhCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhcCcCEEEEEe-ceEcCCChHHHhcCcCCCcCHHH
Confidence 444433222222221 688999999999999999887443322 221 11 11
Q ss_pred CHHHHHHHHHHHHHcCCcEE
Q 019890 275 TPDQVVSTMEKVRAAGVDVM 294 (334)
Q Consensus 275 TdEE~~etl~~Lre~gvd~v 294 (334)
..+-+....+.|++.|+...
T Consensus 381 ~~~m~~~a~~~l~~~Gy~~Y 400 (488)
T PRK08207 381 IEKMMEEAEEWAKELGYVPY 400 (488)
T ss_pred HHHHHHHHHHHHHHcCCHhh
Confidence 22334555666777888754
No 276
>PRK09432 metF 5,10-methylenetetrahydrofolate reductase; Provisional
Probab=59.82 E-value=1.8e+02 Score=28.39 Aligned_cols=140 Identities=14% Similarity=0.088 Sum_probs=74.4
Q ss_pred CCchhHHHHHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhCCCCceeeeecccccc--ccccchh-hHHHH
Q 019890 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVAKSGLN--VFAHNIE-TVEEL 233 (334)
Q Consensus 157 ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~P~i~vE~Ll~~ag~d--v~~HnlE-Tv~~l 233 (334)
.+..++......+.+.|++.|.+..+|.....+....+-.++|+.|++. ....+.+ ...|+ -...+++ .+..|
T Consensus 94 ~n~~~l~~~L~~~~~~GI~niLaLrGD~p~~~~~~~~~a~dLv~li~~~-~~~~i~v---a~yPeghp~~~~~~~dl~~L 169 (296)
T PRK09432 94 ATPDELRTIAKDYWNNGIRHIVALRGDLPPGSGKPEMYASDLVTLLKSV-ADFDISV---AAYPEVHPEAKSAQADLINL 169 (296)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCCCCcCHHHHHHHHHHh-CCCccce---eeCCCCCCCCCCHHHHHHHH
Confidence 4778899998899999999998887774221222122334777777654 2222111 11111 0122232 23455
Q ss_pred HHhhcC--------CCCCHHHHHHHHHHHHHhCCCcceEeeceE--------------Ee-------------cCCCHHH
Q 019890 234 QSAVRD--------HRANFKQSLDVLMMAKDYVPAGTLTKTSIM--------------LG-------------CGETPDQ 278 (334)
Q Consensus 234 ~~~Vr~--------r~~tye~sL~vL~~ak~~~p~Gl~tkTgiM--------------VG-------------lGETdEE 278 (334)
.+++.- .-++-+..++.++++++..-+ +.+--||| -| ..+.+++
T Consensus 170 k~K~~aGA~~~iTQ~~Fd~~~~~~f~~~~~~~Gi~-vPIi~GI~pi~s~~~~~~~~~~~Gv~vP~~l~~~l~~~~d~~~~ 248 (296)
T PRK09432 170 KRKVDAGANRAITQFFFDVESYLRFRDRCVSAGID-VEIVPGILPVSNFKQLKKFADMTNVRIPAWMAKMFDGLDDDAET 248 (296)
T ss_pred HHHHHcCCCeeecccccchHHHHHHHHHHHHcCCC-CCEEeeccccCCHHHHHHHHHccCCCCCHHHHHHHHhcCCCHHH
Confidence 555531 112344455666666554111 33344443 11 1233232
Q ss_pred --------HHHHHHHHHHcCCcEEeeccCcC
Q 019890 279 --------VVSTMEKVRAAGVDVMTFGQYMR 301 (334)
Q Consensus 279 --------~~etl~~Lre~gvd~vtigqYlr 301 (334)
..+.+++|.+.|++-+|+..+-+
T Consensus 249 ~~~~Gi~~a~e~i~~L~~~gv~GvH~yt~n~ 279 (296)
T PRK09432 249 RKLVGASIAMDMVKILSREGVKDFHFYTLNR 279 (296)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCEEEEecCCC
Confidence 56788889999999999975433
No 277
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=59.65 E-value=1.4e+02 Score=28.49 Aligned_cols=71 Identities=13% Similarity=0.143 Sum_probs=41.6
Q ss_pred CCCCchhHHHHHHHHHHCCCcEEEEe--eecCCCC---CCchHHHHHHHHHHHHhhCC-CCceeee-------ecccccc
Q 019890 155 PPPDPDEPTNVAEAIASWGLDYVVIT--SVDRDDL---ADQGSGHFAQTVRKLKELKP-NMLIEAL-------VAKSGLN 221 (334)
Q Consensus 155 ~~ld~~Ep~~~A~av~~~GlkeVVLT--Sv~rdDl---~d~Ga~~fa~lIr~Ik~~~P-~i~vE~L-------l~~ag~d 221 (334)
..++.+++.+.|+...+.|...|-|= |.+.+.- +....+.+..+|+.|++... -++|... ..+.|.+
T Consensus 19 ~~~~~~~~~~~a~~~~~~GAdiIDIG~~st~p~~~~i~~~~E~~rl~~~v~~i~~~~~~plSIDT~~~~v~e~al~~G~~ 98 (257)
T cd00739 19 RFLSLDKAVAHAEKMIAEGADIIDIGGESTRPGADPVSVEEELERVIPVLEALRGELDVLISVDTFRAEVARAALEAGAD 98 (257)
T ss_pred CCCCHHHHHHHHHHHHHCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCcEEEeCCCHHHHHHHHHhCCC
Confidence 35789999999999999999998883 2221100 11122345556777776421 1444333 2234666
Q ss_pred cccc
Q 019890 222 VFAH 225 (334)
Q Consensus 222 v~~H 225 (334)
++|.
T Consensus 99 iINd 102 (257)
T cd00739 99 IIND 102 (257)
T ss_pred EEEe
Confidence 6663
No 278
>PRK13384 delta-aminolevulinic acid dehydratase; Provisional
Probab=59.53 E-value=22 Score=35.29 Aligned_cols=55 Identities=25% Similarity=0.442 Sum_probs=42.4
Q ss_pred CCCCchhHHHHHHHHHHCCCcEEEEeeecCCCCCC-chH------HHHHHHHHHHHhhCCCCce
Q 019890 155 PPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLAD-QGS------GHFAQTVRKLKELKPNMLI 211 (334)
Q Consensus 155 ~~ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d-~Ga------~~fa~lIr~Ik~~~P~i~v 211 (334)
...+.+.+.++++.+.+.|++-|.|=|+.. ..| .|. .-+.+.|+.||+.+|++.|
T Consensus 56 ~r~sid~l~~~~~~~~~~Gi~~v~lFgv~~--~Kd~~gs~A~~~~g~v~~air~iK~~~pdl~v 117 (322)
T PRK13384 56 SRLPESALADEIERLYALGIRYVMPFGISH--HKDAKGSDTWDDNGLLARMVRTIKAAVPEMMV 117 (322)
T ss_pred ceECHHHHHHHHHHHHHcCCCEEEEeCCCC--CCCCCcccccCCCChHHHHHHHHHHHCCCeEE
Confidence 457899999999999999999999988742 222 121 2467899999999998644
No 279
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=59.41 E-value=21 Score=35.33 Aligned_cols=51 Identities=24% Similarity=0.378 Sum_probs=36.2
Q ss_pred HHHHHHHHHHhCCCcceEe--eceEEe-c--CCCHHHHHHHHHHHHHcCCcEEeecc
Q 019890 247 SLDVLMMAKDYVPAGTLTK--TSIMLG-C--GETPDQVVSTMEKVRAAGVDVMTFGQ 298 (334)
Q Consensus 247 sL~vL~~ak~~~p~Gl~tk--TgiMVG-l--GETdEE~~etl~~Lre~gvd~vtigq 298 (334)
-+++++.+|+..+..+.++ -+. .. + |.+.+|..+.++.|.+.|+|.+++..
T Consensus 190 ~~eiv~aIR~~vG~d~~v~iRi~~-~D~~~~g~~~~e~~~i~~~Le~~G~d~i~vs~ 245 (353)
T cd02930 190 PVEIVRAVRAAVGEDFIIIYRLSM-LDLVEGGSTWEEVVALAKALEAAGADILNTGI 245 (353)
T ss_pred HHHHHHHHHHHcCCCceEEEEecc-cccCCCCCCHHHHHHHHHHHHHcCCCEEEeCC
Confidence 3688888888765334433 111 11 1 56889999999999999999999953
No 280
>PF07056 DUF1335: Protein of unknown function (DUF1335); InterPro: IPR009766 This family represents a conserved region approximately 130 residues long within a number of proteins of unknown function that seem to be specific to the white spot syndrome virus (WSSV).
Probab=59.23 E-value=14 Score=31.86 Aligned_cols=27 Identities=19% Similarity=0.479 Sum_probs=24.7
Q ss_pred ceEeeceEEecCCCHHHHHHHHHHHHH
Q 019890 262 TLTKTSIMLGCGETPDQVVSTMEKVRA 288 (334)
Q Consensus 262 l~tkTgiMVGlGETdEE~~etl~~Lre 288 (334)
++++|++++|+|=|..++.++|+-+..
T Consensus 28 ~IvttDfLiGlG~s~~~v~~~L~~me~ 54 (131)
T PF07056_consen 28 MIVTTDFLIGLGFSPRNVTKKLKSMEQ 54 (131)
T ss_pred EEEehhheeecCCChHHHHHHHHHHHH
Confidence 789999999999999999999987763
No 281
>PLN02540 methylenetetrahydrofolate reductase
Probab=59.03 E-value=1.2e+02 Score=32.62 Aligned_cols=52 Identities=13% Similarity=0.128 Sum_probs=37.0
Q ss_pred CCchhHHHHHHHHHHCCCcEEEEeeecCCCCC------CchHHHHHHHHHHHHhhCCC
Q 019890 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLA------DQGSGHFAQTVRKLKELKPN 208 (334)
Q Consensus 157 ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~------d~Ga~~fa~lIr~Ik~~~P~ 208 (334)
.+.+++......+.+.|++.|....+|...-. +++..+-.++|+.|++.+.+
T Consensus 70 ~n~~~L~~~L~~a~~~GIrNILALrGDpp~~~d~~~~~~g~F~~A~dLV~~Ir~~~gd 127 (565)
T PLN02540 70 MPVEKIDHALETIKSNGIQNILALRGDPPHGQDKFVQVEGGFACALDLVKHIRSKYGD 127 (565)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCcCCCCCCcccHHHHHHHHHHhCCC
Confidence 45678888888889999999966666632111 23456677899999987543
No 282
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=58.32 E-value=93 Score=30.97 Aligned_cols=123 Identities=13% Similarity=0.206 Sum_probs=68.3
Q ss_pred hHHHHHHHHHHCCC--cEEEEeeecCCCCCCchHHHHHHHHHHHHhhCCCCce---eee-------eccccccccc-cch
Q 019890 161 EPTNVAEAIASWGL--DYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLI---EAL-------VAKSGLNVFA-HNI 227 (334)
Q Consensus 161 Ep~~~A~av~~~Gl--keVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~P~i~v---E~L-------l~~ag~dv~~-Hnl 227 (334)
+-.+.+.++.+.|+ +.|+|= ..++....+.++|+.|++..|+..| ++. +.++|.|.+. ++-
T Consensus 97 ~~~~~~~~Lv~ag~~~d~i~iD------~a~gh~~~~~e~I~~ir~~~p~~~vi~g~V~t~e~a~~l~~aGad~i~vg~~ 170 (326)
T PRK05458 97 DEYDFVDQLAAEGLTPEYITID------IAHGHSDSVINMIQHIKKHLPETFVIAGNVGTPEAVRELENAGADATKVGIG 170 (326)
T ss_pred HHHHHHHHHHhcCCCCCEEEEE------CCCCchHHHHHHHHHHHhhCCCCeEEEEecCCHHHHHHHHHcCcCEEEECCC
Confidence 33566677778865 988873 3334456788999999999886432 232 7788888753 221
Q ss_pred h-hHHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCcceEeeceEEecCCCHHHHHHHHHHHHHcCCcEEeeccCc
Q 019890 228 E-TVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYM 300 (334)
Q Consensus 228 E-Tv~~l~~~Vr~r~~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGlGETdEE~~etl~~Lre~gvd~vtigqYl 300 (334)
. +. -..+... .....++-+..+..+++.... -.+..|.| .+..|+...|. +|.|.|.+|-++
T Consensus 171 ~G~~-~~t~~~~-g~~~~~w~l~ai~~~~~~~~i-pVIAdGGI----~~~~Di~KaLa----~GA~aV~vG~~~ 233 (326)
T PRK05458 171 PGKV-CITKIKT-GFGTGGWQLAALRWCAKAARK-PIIADGGI----RTHGDIAKSIR----FGATMVMIGSLF 233 (326)
T ss_pred CCcc-ccccccc-CCCCCccHHHHHHHHHHHcCC-CEEEeCCC----CCHHHHHHHHH----hCCCEEEechhh
Confidence 1 11 0111111 111112234456666554221 22333333 46667665553 488988888665
No 283
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=58.06 E-value=1.4e+02 Score=28.18 Aligned_cols=121 Identities=14% Similarity=0.134 Sum_probs=75.6
Q ss_pred CCCCchhHHHHHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhCCCCceeeeeccccccccccchhhHHHHH
Q 019890 155 PPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVAKSGLNVFAHNIETVEELQ 234 (334)
Q Consensus 155 ~~ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~P~i~vE~Ll~~ag~dv~~HnlETv~~l~ 234 (334)
..+|.+...+.++.+.+.|++=+++-|-.. .......+...++++.+.+...+ ...++.+-
T Consensus 16 g~iD~~~~~~~i~~l~~~Gv~gl~v~GstG-E~~~lt~~Er~~l~~~~~~~~~~----------~~~vi~gv-------- 76 (284)
T cd00950 16 GSVDFDALERLIEFQIENGTDGLVVCGTTG-ESPTLSDEEHEAVIEAVVEAVNG----------RVPVIAGT-------- 76 (284)
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEECCCCc-chhhCCHHHHHHHHHHHHHHhCC----------CCcEEecc--------
Confidence 468999999999999999999887755331 11222223345556555554221 12223322
Q ss_pred HhhcCCCCCHHHHHHHHHHHHHhCCCcceEeeceEEecCCCHHHHHHHHHHHHHcCCcEEeeccCcCCC
Q 019890 235 SAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRPS 303 (334)
Q Consensus 235 ~~Vr~r~~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGlGETdEE~~etl~~Lre~gvd~vtigqYlrP~ 303 (334)
...+.++.++..+.+++.-.+|+.+-.-... .=+++++.+.++.+.+. .+ ++|.-|-.|.
T Consensus 77 -----~~~~~~~~~~~a~~a~~~G~d~v~~~~P~~~--~~~~~~l~~~~~~ia~~-~~-~pi~lYn~P~ 136 (284)
T cd00950 77 -----GSNNTAEAIELTKRAEKAGADAALVVTPYYN--KPSQEGLYAHFKAIAEA-TD-LPVILYNVPG 136 (284)
T ss_pred -----CCccHHHHHHHHHHHHHcCCCEEEEcccccC--CCCHHHHHHHHHHHHhc-CC-CCEEEEEChh
Confidence 1346778888889998874444433333222 34789999999999886 33 6776776664
No 284
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=57.92 E-value=17 Score=36.59 Aligned_cols=121 Identities=24% Similarity=0.367 Sum_probs=64.5
Q ss_pred hHHHHHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhCCCCceee---e-------eccccccccccch---
Q 019890 161 EPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEA---L-------VAKSGLNVFAHNI--- 227 (334)
Q Consensus 161 Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~P~i~vE~---L-------l~~ag~dv~~Hnl--- 227 (334)
+-.+.++++.+.|++.+||-+- .+-..++.+.|+.||+.+|++.|=+ - |.++|.|.+--.+
T Consensus 108 ~~~er~~~L~~agvD~ivID~a------~g~s~~~~~~ik~ik~~~~~~~viaGNV~T~e~a~~L~~aGad~vkVGiGpG 181 (352)
T PF00478_consen 108 DDFERAEALVEAGVDVIVIDSA------HGHSEHVIDMIKKIKKKFPDVPVIAGNVVTYEGAKDLIDAGADAVKVGIGPG 181 (352)
T ss_dssp CHHHHHHHHHHTT-SEEEEE-S------STTSHHHHHHHHHHHHHSTTSEEEEEEE-SHHHHHHHHHTT-SEEEESSSSS
T ss_pred HHHHHHHHHHHcCCCEEEcccc------CccHHHHHHHHHHHHHhCCCceEEecccCCHHHHHHHHHcCCCEEEEeccCC
Confidence 3467777888899999999543 3345788999999999999543311 0 7788887654432
Q ss_pred --hhHHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCcceEeeceEEecCCCHHHHHHHHHHHHHcCCcEEeeccCc
Q 019890 228 --ETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYM 300 (334)
Q Consensus 228 --ETv~~l~~~Vr~r~~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGlGETdEE~~etl~~Lre~gvd~vtigqYl 300 (334)
=|...+.--=+ ....--.++-+.+++. |+.+-+|.=+ -+.-|+...| .+|-|.|=+|-++
T Consensus 182 siCtTr~v~GvG~---PQ~tAv~~~a~~a~~~---~v~iIADGGi---~~sGDi~KAl----a~GAd~VMlG~ll 243 (352)
T PF00478_consen 182 SICTTREVTGVGV---PQLTAVYECAEAARDY---GVPIIADGGI---RTSGDIVKAL----AAGADAVMLGSLL 243 (352)
T ss_dssp TTBHHHHHHSBSC---THHHHHHHHHHHHHCT---TSEEEEESS----SSHHHHHHHH----HTT-SEEEESTTT
T ss_pred cccccccccccCC---cHHHHHHHHHHHhhhc---cCceeecCCc---Ccccceeeee----eecccceeechhh
Confidence 12222221111 1111223344444433 3444444311 2344454443 4678888888665
No 285
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=57.51 E-value=1.4e+02 Score=27.97 Aligned_cols=44 Identities=18% Similarity=0.348 Sum_probs=32.5
Q ss_pred HHHHHHHHHhCCCcceEeeceEEecCC-CHHHHHHHHHHHHHcCCcEEeeccCc
Q 019890 248 LDVLMMAKDYVPAGTLTKTSIMLGCGE-TPDQVVSTMEKVRAAGVDVMTFGQYM 300 (334)
Q Consensus 248 L~vL~~ak~~~p~Gl~tkTgiMVGlGE-TdEE~~etl~~Lre~gvd~vtigqYl 300 (334)
.+.++++|+..++ ..+++|+|= |.+++ +.+.+.|+|.+-+|.++
T Consensus 173 ~~~i~~lr~~~~~-----~~i~v~gGI~~~e~i----~~~~~~gaD~vvvGSai 217 (244)
T PRK13125 173 ERNIKRVRNLVGN-----KYLVVGFGLDSPEDA----RDALSAGADGVVVGTAF 217 (244)
T ss_pred HHHHHHHHHhcCC-----CCEEEeCCcCCHHHH----HHHHHcCCCEEEECHHH
Confidence 4577888876543 248999998 76655 45668999999999765
No 286
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=57.34 E-value=52 Score=33.06 Aligned_cols=50 Identities=12% Similarity=0.179 Sum_probs=34.9
Q ss_pred HHHHHHHHHhCCCcceE--eec---eEEec-------------CCCHHHHHHHHHHHHHcCCcEEeec
Q 019890 248 LDVLMMAKDYVPAGTLT--KTS---IMLGC-------------GETPDQVVSTMEKVRAAGVDVMTFG 297 (334)
Q Consensus 248 L~vL~~ak~~~p~Gl~t--kTg---iMVGl-------------GETdEE~~etl~~Lre~gvd~vtig 297 (334)
+++|+.+|+..+.++.+ |-+ .+.|+ |-|.||..+.++.|.+.|+|.|++.
T Consensus 205 ~eii~~vr~~~g~~f~v~vri~~~~~~~~~~~~~~~~~~~~~~g~~~e~~~~~~~~l~~~gvD~l~vs 272 (382)
T cd02931 205 IEIVEEIKARCGEDFPVSLRYSVKSYIKDLRQGALPGEEFQEKGRDLEEGLKAAKILEEAGYDALDVD 272 (382)
T ss_pred HHHHHHHHHhcCCCceEEEEEechhhccccccccccccccccCCCCHHHHHHHHHHHHHhCCCEEEeC
Confidence 57888888876533332 221 12221 6688999999999999999999774
No 287
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=57.21 E-value=1.7e+02 Score=27.82 Aligned_cols=121 Identities=14% Similarity=0.170 Sum_probs=75.3
Q ss_pred CCCCchhHHHHHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhCCCCceeeeeccccccccccchhhHHHHH
Q 019890 155 PPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVAKSGLNVFAHNIETVEELQ 234 (334)
Q Consensus 155 ~~ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~P~i~vE~Ll~~ag~dv~~HnlETv~~l~ 234 (334)
..+|.+...+.++.+.+.|++-+++-|... +......+.-.++++.+.+..++ ...++.|-
T Consensus 17 g~iD~~~l~~~i~~l~~~Gv~gi~~~Gs~G-E~~~ls~~Er~~~~~~~~~~~~~----------~~~vi~gv-------- 77 (292)
T PRK03170 17 GSVDFAALRKLVDYLIANGTDGLVVVGTTG-ESPTLTHEEHEELIRAVVEAVNG----------RVPVIAGT-------- 77 (292)
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEECCcCC-ccccCCHHHHHHHHHHHHHHhCC----------CCcEEeec--------
Confidence 468999999999999999999988766442 12222223344555555443221 12233332
Q ss_pred HhhcCCCCCHHHHHHHHHHHHHhCCCcceEeeceEEecCCCHHHHHHHHHHHHHcCCcEEeeccCcCCC
Q 019890 235 SAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRPS 303 (334)
Q Consensus 235 ~~Vr~r~~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGlGETdEE~~etl~~Lre~gvd~vtigqYlrP~ 303 (334)
-..+.++.++..+.+++.-.+++.+-.-.. +.-+++++.+.++.+.+. ++ +++.-|--|.
T Consensus 78 -----~~~~~~~~i~~a~~a~~~G~d~v~~~pP~~--~~~~~~~i~~~~~~ia~~-~~-~pv~lYn~P~ 137 (292)
T PRK03170 78 -----GSNSTAEAIELTKFAEKAGADGALVVTPYY--NKPTQEGLYQHFKAIAEA-TD-LPIILYNVPG 137 (292)
T ss_pred -----CCchHHHHHHHHHHHHHcCCCEEEECCCcC--CCCCHHHHHHHHHHHHhc-CC-CCEEEEECcc
Confidence 134678888888999886333333322222 355789999999999875 33 6777776664
No 288
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=57.16 E-value=60 Score=30.70 Aligned_cols=118 Identities=24% Similarity=0.378 Sum_probs=71.7
Q ss_pred CchhHHHHHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhh--------CCCCceeeeeccccccccccchhh
Q 019890 158 DPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKEL--------KPNMLIEALVAKSGLNVFAHNIET 229 (334)
Q Consensus 158 d~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~--------~P~i~vE~Ll~~ag~dv~~HnlET 229 (334)
=.+.|.+.+++..+.|.++|.+---. ..|..++|+.||+. +|++.++.+ .+.++.
T Consensus 69 MV~~p~~~i~~fa~agad~It~H~E~--------~~~~~r~i~~Ik~~G~kaGv~lnP~Tp~~~i---------~~~l~~ 131 (220)
T COG0036 69 MVENPDRYIEAFAKAGADIITFHAEA--------TEHIHRTIQLIKELGVKAGLVLNPATPLEAL---------EPVLDD 131 (220)
T ss_pred ecCCHHHHHHHHHHhCCCEEEEEecc--------CcCHHHHHHHHHHcCCeEEEEECCCCCHHHH---------HHHHhh
Confidence 36789999999999999998774421 23678899999874 244444333 111111
Q ss_pred HHH-HHHhhcC--CCCC-HHHHHHHHHHHHHhCCCcceEeeceEEec--CCCHHHHHHHHHHHHHcCCcEEeeccCc
Q 019890 230 VEE-LQSAVRD--HRAN-FKQSLDVLMMAKDYVPAGTLTKTSIMLGC--GETPDQVVSTMEKVRAAGVDVMTFGQYM 300 (334)
Q Consensus 230 v~~-l~~~Vr~--r~~t-ye~sL~vL~~ak~~~p~Gl~tkTgiMVGl--GETdEE~~etl~~Lre~gvd~vtigqYl 300 (334)
++- +.=.|.| .+.. -...++.|+.+|++.++ +.++++-. |=+. +++..+.++|.|++-.|.|+
T Consensus 132 vD~VllMsVnPGfgGQ~Fi~~~l~Ki~~lr~~~~~----~~~~~IeVDGGI~~----~t~~~~~~AGad~~VaGSal 200 (220)
T COG0036 132 VDLVLLMSVNPGFGGQKFIPEVLEKIRELRAMIDE----RLDILIEVDGGINL----ETIKQLAAAGADVFVAGSAL 200 (220)
T ss_pred CCEEEEEeECCCCcccccCHHHHHHHHHHHHHhcc----cCCeEEEEeCCcCH----HHHHHHHHcCCCEEEEEEEE
Confidence 100 0001121 1222 34567777777777553 12666766 4443 57788999999999999876
No 289
>TIGR02321 Pphn_pyruv_hyd phosphonopyruvate hydrolase. This family consists of phosphonopyruvate hydrolase, an enzyme closely related to phosphoenolpyruvate phosphomutase. It cleaves the direct C-P bond of phosphonopyruvate. The characterized example is from Variovorax sp. Pal2.
Probab=56.80 E-value=47 Score=32.39 Aligned_cols=52 Identities=13% Similarity=0.206 Sum_probs=34.8
Q ss_pred CHHHHHHHHHHHHHh--CCCcceE--eeceEE-ecCCCHHHHHHHHHHHHHcCCcEEeec
Q 019890 243 NFKQSLDVLMMAKDY--VPAGTLT--KTSIML-GCGETPDQVVSTMEKVRAAGVDVMTFG 297 (334)
Q Consensus 243 tye~sL~vL~~ak~~--~p~Gl~t--kTgiMV-GlGETdEE~~etl~~Lre~gvd~vtig 297 (334)
+.++..+.|+.+++. .++ +.+ +|+..+ |.| .+|.++=.+.-.++|-|.+.+-
T Consensus 130 ~~ee~~~kI~Aa~~a~~~~d-~~I~ARTDa~~~~~g--~deAI~Ra~aY~eAGAD~ifv~ 186 (290)
T TIGR02321 130 RIEEFQGKIAAATAARADRD-FVVIARVEALIAGLG--QQEAVRRGQAYEEAGADAILIH 186 (290)
T ss_pred CHHHHHHHHHHHHHhCCCCC-EEEEEEeccccccCC--HHHHHHHHHHHHHcCCCEEEec
Confidence 455555666665553 234 443 788763 444 4778888888899999999884
No 290
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=56.50 E-value=53 Score=30.18 Aligned_cols=121 Identities=13% Similarity=0.198 Sum_probs=65.1
Q ss_pred chhHHHHHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhCCCCceee---------e--eccccccccccch
Q 019890 159 PDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEA---------L--VAKSGLNVFAHNI 227 (334)
Q Consensus 159 ~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~P~i~vE~---------L--l~~ag~dv~~Hnl 227 (334)
..+|.+.|+.+.+.|++++.+.--+. ...+.....+.|++|.+..+ +.+.+ . +.++|.+.+.-+-
T Consensus 31 ~~~~~e~a~~~~~~G~~~l~i~dl~~---~~~~~~~~~~~i~~i~~~~~-~~l~v~GGi~~~~~~~~~~~~Ga~~v~iGs 106 (241)
T PRK13585 31 YGDPVEVAKRWVDAGAETLHLVDLDG---AFEGERKNAEAIEKIIEAVG-VPVQLGGGIRSAEDAASLLDLGVDRVILGT 106 (241)
T ss_pred CCCHHHHHHHHHHcCCCEEEEEechh---hhcCCcccHHHHHHHHHHcC-CcEEEcCCcCCHHHHHHHHHcCCCEEEECh
Confidence 34688899999999999987754331 22233345667777766532 22222 0 3345555433221
Q ss_pred hhHHHHHHhhcCCCCCHHHHHHHHHHHHHhCCC-cceEeec----eEE--ec-CCCHHHHHHHHHHHHHcCCcEEeecc
Q 019890 228 ETVEELQSAVRDHRANFKQSLDVLMMAKDYVPA-GTLTKTS----IML--GC-GETPDQVVSTMEKVRAAGVDVMTFGQ 298 (334)
Q Consensus 228 ETv~~l~~~Vr~r~~tye~sL~vL~~ak~~~p~-Gl~tkTg----iMV--Gl-GETdEE~~etl~~Lre~gvd~vtigq 298 (334)
+. ....+.++++.+.++. -+.+.-+ -++ |. .++..+..+..+.+.+.|++.+++..
T Consensus 107 ~~---------------~~~~~~~~~i~~~~g~~~i~~sid~~~~~v~~~g~~~~~~~~~~~~~~~~~~~G~~~i~~~~ 170 (241)
T PRK13585 107 AA---------------VENPEIVRELSEEFGSERVMVSLDAKDGEVVIKGWTEKTGYTPVEAAKRFEELGAGSILFTN 170 (241)
T ss_pred HH---------------hhChHHHHHHHHHhCCCcEEEEEEeeCCEEEECCCcccCCCCHHHHHHHHHHcCCCEEEEEe
Confidence 11 1112344445444421 1222222 122 43 34444778888888999999998753
No 291
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=56.43 E-value=37 Score=35.22 Aligned_cols=136 Identities=19% Similarity=0.238 Sum_probs=80.3
Q ss_pred HHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhCCCCceeee-------eccccccccccc----------hhhHHH
Q 019890 170 ASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEAL-------VAKSGLNVFAHN----------IETVEE 232 (334)
Q Consensus 170 ~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~P~i~vE~L-------l~~ag~dv~~Hn----------lETv~~ 232 (334)
+.+|.+-|.|...- |++ +.+.++++..+..-=+..||+- ..++|.+++..| +++..+
T Consensus 129 ~~~GADavLLI~~~---L~~---~~l~~l~~~a~~lGl~~lvEvh~~~El~~al~~~a~iiGiNnRdL~t~~vd~~~~~~ 202 (454)
T PRK09427 129 RYYGADAILLMLSV---LDD---EQYRQLAAVAHSLNMGVLTEVSNEEELERAIALGAKVIGINNRNLRDLSIDLNRTRE 202 (454)
T ss_pred HHcCCCchhHHHHh---CCH---HHHHHHHHHHHHcCCcEEEEECCHHHHHHHHhCCCCEEEEeCCCCccceECHHHHHH
Confidence 57899988886654 332 3566777666654223345553 445566665554 567788
Q ss_pred HHHhhcC-------CC-CCHHHHHHHHHHHHHhCCCcceEeeceEEec--CCCHHHHH------------HHHHHHHHcC
Q 019890 233 LQSAVRD-------HR-ANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC--GETPDQVV------------STMEKVRAAG 290 (334)
Q Consensus 233 l~~~Vr~-------r~-~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGl--GETdEE~~------------etl~~Lre~g 290 (334)
|.+.+.+ .+ .+.++... + +..+ +|+.+++.+|--- +++-.++. +.+....++|
T Consensus 203 l~~~ip~~~~~vseSGI~t~~d~~~-~---~~~~-davLiG~~lm~~~d~~~~~~~L~~~~vKICGit~~eda~~a~~~G 277 (454)
T PRK09427 203 LAPLIPADVIVISESGIYTHAQVRE-L---SPFA-NGFLIGSSLMAEDDLELAVRKLILGENKVCGLTRPQDAKAAYDAG 277 (454)
T ss_pred HHhhCCCCcEEEEeCCCCCHHHHHH-H---HhcC-CEEEECHHHcCCCCHHHHHHHHhccccccCCCCCHHHHHHHHhCC
Confidence 8887752 11 23444333 3 2322 4688888888753 33333332 2245667899
Q ss_pred CcEEeeccCcCCCCCCCcccccCCHHHHHHHHH
Q 019890 291 VDVMTFGQYMRPSKRHMPVSEYITPEAFERYRA 323 (334)
Q Consensus 291 vd~vtigqYlrP~~~h~~v~~yv~P~~f~~~~~ 323 (334)
+|.+++- |..+++| ||+|++...+..
T Consensus 278 aD~lGfI-f~~~SpR------~V~~~~a~~i~~ 303 (454)
T PRK09427 278 AVYGGLI-FVEKSPR------YVSLEQAQEIIA 303 (454)
T ss_pred CCEEeeE-eCCCCCC------CCCHHHHHHHHH
Confidence 9999996 5556665 677776665543
No 292
>COG4474 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=56.41 E-value=55 Score=29.88 Aligned_cols=61 Identities=30% Similarity=0.389 Sum_probs=44.3
Q ss_pred chhHHHHHHHHHHCCCcEEEEeeecCCCCCCchHHHH-HHHHHHHHhhCCCCceeee--eccccccccccc
Q 019890 159 PDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHF-AQTVRKLKELKPNMLIEAL--VAKSGLNVFAHN 226 (334)
Q Consensus 159 ~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~f-a~lIr~Ik~~~P~i~vE~L--l~~ag~dv~~Hn 226 (334)
-+-+.+..+++.+.|++.+++||. | |.+.+ ++++..+++.+|++.+-++ +..-+-..=.+|
T Consensus 28 Kkai~~~l~~lleeGleW~litGq----L---G~E~WA~Evv~eLk~eyp~ik~avitpFe~q~~~WnE~n 91 (180)
T COG4474 28 KKAIKKKLEALLEEGLEWVLITGQ----L---GFELWAAEVVIELKEEYPHIKLAVITPFEEQGKNWNEDN 91 (180)
T ss_pred HHHHHHHHHHHHhcCceEEEEecc----c---cHHHHHHHHHHHHHhhCCCeeEEEEechhhhccccCchh
Confidence 456778888889999999999995 3 55554 5899999999998877776 333343333344
No 293
>PLN02417 dihydrodipicolinate synthase
Probab=56.29 E-value=1.9e+02 Score=27.63 Aligned_cols=134 Identities=9% Similarity=0.048 Sum_probs=82.5
Q ss_pred CCCCchhHHHHHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhCCCCceeeeeccccccccccchhhHHHHH
Q 019890 155 PPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVAKSGLNVFAHNIETVEELQ 234 (334)
Q Consensus 155 ~~ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~P~i~vE~Ll~~ag~dv~~HnlETv~~l~ 234 (334)
..+|.+...+.++.+.+.|++=|++-|-.. +......+...++++.+.+...+ .+.++.+-
T Consensus 17 g~iD~~~~~~~i~~l~~~Gv~Gi~~~GstG-E~~~ls~~Er~~~~~~~~~~~~~----------~~pvi~gv-------- 77 (280)
T PLN02417 17 GRFDLEAYDSLVNMQIENGAEGLIVGGTTG-EGQLMSWDEHIMLIGHTVNCFGG----------KIKVIGNT-------- 77 (280)
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEECccCc-chhhCCHHHHHHHHHHHHHHhCC----------CCcEEEEC--------
Confidence 468999999999999999999988755432 12222233445566555443221 12233322
Q ss_pred HhhcCCCCCHHHHHHHHHHHHHhCCCcceEeeceEEecCCCHHHHHHHHHHHHHcCCcEEeeccCcCCCCCCCcccccCC
Q 019890 235 SAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMPVSEYIT 314 (334)
Q Consensus 235 ~~Vr~r~~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGlGETdEE~~etl~~Lre~gvd~vtigqYlrP~~~h~~v~~yv~ 314 (334)
-..+.++.++..+++++.--+++.+-.-.. +.=+++++.+.++.+.+.. ++.-|--|..... -++
T Consensus 78 -----~~~~t~~~i~~a~~a~~~Gadav~~~~P~y--~~~~~~~i~~~f~~va~~~----pi~lYn~P~~tg~----~l~ 142 (280)
T PLN02417 78 -----GSNSTREAIHATEQGFAVGMHAALHINPYY--GKTSQEGLIKHFETVLDMG----PTIIYNVPGRTGQ----DIP 142 (280)
T ss_pred -----CCccHHHHHHHHHHHHHcCCCEEEEcCCcc--CCCCHHHHHHHHHHHHhhC----CEEEEEChhHhCc----CCC
Confidence 135678888899999887444333333222 2457899999999999874 6666766754333 245
Q ss_pred HHHHHHHH
Q 019890 315 PEAFERYR 322 (334)
Q Consensus 315 P~~f~~~~ 322 (334)
|+.++++.
T Consensus 143 ~~~l~~l~ 150 (280)
T PLN02417 143 PEVIFKIA 150 (280)
T ss_pred HHHHHHHh
Confidence 66555543
No 294
>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed
Probab=55.92 E-value=57 Score=31.47 Aligned_cols=48 Identities=8% Similarity=0.203 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHhCCCcceEe--------e-----ceEEecCCCHH---HHHHHHHHHHHcCCcEEee
Q 019890 245 KQSLDVLMMAKDYVPAGTLTK--------T-----SIMLGCGETPD---QVVSTMEKVRAAGVDVMTF 296 (334)
Q Consensus 245 e~sL~vL~~ak~~~p~Gl~tk--------T-----giMVGlGETdE---E~~etl~~Lre~gvd~vti 296 (334)
++..+.++.+.+. |+.+. | ++.+ .|-|++ ++++-.+.+.++|++.+.+
T Consensus 117 ~~~~~~I~al~~a---gIpV~gHiGL~pq~~~~~gg~~i-~grt~~~a~~~i~ra~a~~eAGA~~i~l 180 (264)
T PRK00311 117 EEVAETIKRLVER---GIPVMGHLGLTPQSVNVLGGYKV-QGRDEEAAEKLLEDAKALEEAGAFALVL 180 (264)
T ss_pred HHHHHHHHHHHHC---CCCEeeeecccceeecccCCeee-ecCCHHHHHHHHHHHHHHHHCCCCEEEE
Confidence 3445666666654 54443 1 2333 488877 5566666777889998776
No 295
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=55.68 E-value=1.6e+02 Score=29.84 Aligned_cols=133 Identities=19% Similarity=0.254 Sum_probs=75.8
Q ss_pred CCCchhHHHHHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhCCCCceeee------------ecccccccc
Q 019890 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEAL------------VAKSGLNVF 223 (334)
Q Consensus 156 ~ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~P~i~vE~L------------l~~ag~dv~ 223 (334)
..|.+.-.++..++.++|..-|-+| |++ . .-|+.+.+|++..+ +-+. ..+.|+|-+
T Consensus 32 T~Dv~aTv~QI~~L~~aG~dIVRvt-v~~--~------e~A~A~~~Ik~~~~---vPLVaDiHf~~rla~~~~~~g~~k~ 99 (361)
T COG0821 32 TADVEATVAQIKALERAGCDIVRVT-VPD--M------EAAEALKEIKQRLN---VPLVADIHFDYRLALEAAECGVDKV 99 (361)
T ss_pred cccHHHHHHHHHHHHHcCCCEEEEe-cCC--H------HHHHHHHHHHHhCC---CCEEEEeeccHHHHHHhhhcCcceE
Confidence 4577777788888889997765554 432 1 12667777877642 2111 334444444
Q ss_pred ccchhhHHHHHHhhcCCC-CCHHHHHHHHHHHHHhCCCcceEeeceEEecCCCHHHHHHH----------------HHHH
Q 019890 224 AHNIETVEELQSAVRDHR-ANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVST----------------MEKV 286 (334)
Q Consensus 224 ~HnlETv~~l~~~Vr~r~-~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGlGETdEE~~et----------------l~~L 286 (334)
-.| |-. ...++.-++++.+|+. |+.++-|+=. |-=+.++.+. .+.|
T Consensus 100 RIN------------PGNig~~~~v~~vVe~Ak~~---g~piRIGVN~--GSLek~~~~ky~~pt~ealveSAl~~a~~~ 162 (361)
T COG0821 100 RIN------------PGNIGFKDRVREVVEAAKDK---GIPIRIGVNA--GSLEKRLLEKYGGPTPEALVESALEHAELL 162 (361)
T ss_pred EEC------------CcccCcHHHHHHHHHHHHHc---CCCEEEeccc--CchhHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 333 211 2344677899999986 5777655433 4444444433 3677
Q ss_pred HHcCCcEEeeccCcCCCCCCCcccccCCHHHHHHHHHHHHHh
Q 019890 287 RAAGVDVMTFGQYMRPSKRHMPVSEYITPEAFERYRALGMEM 328 (334)
Q Consensus 287 re~gvd~vtigqYlrP~~~h~~v~~yv~P~~f~~~~~~a~~~ 328 (334)
.++||+.+-+. -++--| ..-.+.|+.+|..+
T Consensus 163 e~l~f~~i~iS------~K~Sdv-----~~~v~aYr~lA~~~ 193 (361)
T COG0821 163 EELGFDDIKVS------VKASDV-----QLMVAAYRLLAKRC 193 (361)
T ss_pred HHCCCCcEEEE------EEcCCH-----HHHHHHHHHHHHhc
Confidence 88888755442 222222 33467777777765
No 296
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=55.47 E-value=1.9e+02 Score=27.57 Aligned_cols=143 Identities=15% Similarity=0.200 Sum_probs=76.8
Q ss_pred CCcccCCCCCC-----CCCCchhHHHHHHHHHHCCCcEEEEeeecCC---------------------CCCCchHHHHHH
Q 019890 144 RFCNVKTSRAP-----PPPDPDEPTNVAEAIASWGLDYVVITSVDRD---------------------DLADQGSGHFAQ 197 (334)
Q Consensus 144 ~FC~V~~~r~p-----~~ld~~Ep~~~A~av~~~GlkeVVLTSv~rd---------------------Dl~d~Ga~~fa~ 197 (334)
.||.+...+ | .+++... +.++.+.+.|+..||+=|+..+ -++..|.+.+.+
T Consensus 5 ~~~G~~~~n-Pv~~aag~~~~~~--~~~~~~~~~g~g~v~~kti~~~~~~g~~~pr~~~~~~~~~n~~g~~~~g~~~~~~ 81 (301)
T PRK07259 5 ELPGLKLKN-PVMPASGTFGFGG--EYARFYDLNGLGAIVTKSTTLEPREGNPTPRIAETPGGMLNAIGLQNPGVDAFIE 81 (301)
T ss_pred EECCEECCC-CcEECCcCCCCCH--HHHHHhhhcCCcEEEeCCCCCCCCCCCCCCcEEecCCceeecCCCCCcCHHHHHH
Confidence 466666543 2 2343332 4555667788888888665421 122344555555
Q ss_pred HHHHHHhhCCC-Cceeee-------------ecccc-ccccccchhhHHHHHH-hhcCCCCCHHHHHHHHHHHHHhCCCc
Q 019890 198 TVRKLKELKPN-MLIEAL-------------VAKSG-LNVFAHNIETVEELQS-AVRDHRANFKQSLDVLMMAKDYVPAG 261 (334)
Q Consensus 198 lIr~Ik~~~P~-i~vE~L-------------l~~ag-~dv~~HnlETv~~l~~-~Vr~r~~tye~sL~vL~~ak~~~p~G 261 (334)
.+...++.... +.+.+. +.++| .|.+.-|+- +|..-. -.. -..+.+...++++.+|+..
T Consensus 82 ~~~~~~~~~~~p~i~si~g~~~~~~~~~a~~~~~aG~~D~iElN~~-cP~~~~gg~~-~~~~~~~~~eiv~~vr~~~--- 156 (301)
T PRK07259 82 EELPWLEEFDTPIIANVAGSTEEEYAEVAEKLSKAPNVDAIELNIS-CPNVKHGGMA-FGTDPELAYEVVKAVKEVV--- 156 (301)
T ss_pred HHHHHHhccCCcEEEEeccCCHHHHHHHHHHHhccCCcCEEEEECC-CCCCCCCccc-cccCHHHHHHHHHHHHHhc---
Confidence 44443322110 112221 55666 777766541 111000 000 1234567788888888753
Q ss_pred ceEeeceEEecCCCHHHHHHHHHHHHHcCCcEEeec
Q 019890 262 TLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFG 297 (334)
Q Consensus 262 l~tkTgiMVGlGETdEE~~etl~~Lre~gvd~vtig 297 (334)
.--++|=++-+.+|+.+..+.|.+.|+|.+++.
T Consensus 157 ---~~pv~vKl~~~~~~~~~~a~~l~~~G~d~i~~~ 189 (301)
T PRK07259 157 ---KVPVIVKLTPNVTDIVEIAKAAEEAGADGLSLI 189 (301)
T ss_pred ---CCCEEEEcCCCchhHHHHHHHHHHcCCCEEEEE
Confidence 112333334455689999999999999988764
No 297
>COG1423 ATP-dependent DNA ligase, homolog of eukaryotic ligase III [DNA replication, recombination, and repair]
Probab=55.38 E-value=1.3e+02 Score=30.54 Aligned_cols=126 Identities=19% Similarity=0.281 Sum_probs=70.7
Q ss_pred CCCCchhHHHHHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhh--------CCCCceeee------------
Q 019890 155 PPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKEL--------KPNMLIEAL------------ 214 (334)
Q Consensus 155 ~~ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~--------~P~i~vE~L------------ 214 (334)
.+++.+|=.++|+ +.|+.+|-+-|.-. ..+-| +++.++|+++.+. .|++.+..+
T Consensus 180 r~Lp~eer~~l~e---kYgl~~V~~fg~~~--~~e~~-eei~eIve~L~keGREGVV~Kdpdm~~~plKYtTsyan~~Di 253 (382)
T COG1423 180 RPLPVEERLELAE---KYGLPHVEIFGEFP--ADEAG-EEIYEIVERLNKEGREGVVMKDPDMRVPPLKYTTSYANIEDI 253 (382)
T ss_pred CCCCHHHHHHHHH---HcCCCceEEeeeec--hhHhH-HHHHHHHHHHhhcCCcceEecCcccccCcceeecccccHHHH
Confidence 3677777777774 89999998888642 22333 7899999998763 255545444
Q ss_pred ------eccccccccccch--------------hhHHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCcceEeeceEEecCC
Q 019890 215 ------VAKSGLNVFAHNI--------------ETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGE 274 (334)
Q Consensus 215 ------l~~ag~dv~~Hnl--------------ETv~~l~~~Vr~r~~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGlGE 274 (334)
..+.|.|.+-.-+ +..++++..+- .+--+-.++.++.+.+ |=.+.-.+=+= =+
T Consensus 254 k~afr~~~elgr~f~~sRiiRe~F~~~E~~e~~~e~~~r~~eLG--~Ail~pl~EsI~~v~~----ge~v~Eef~l~-f~ 326 (382)
T COG1423 254 KYAFRFFFELGRDFFFSRIIREGFQSYEWREGLEEFKRRAKELG--EAILEPLVESIEQVER----GERVYEEFELR-FE 326 (382)
T ss_pred HHHHhhhhhcCchHHHHHHHHHHHHHHHhhccchHHHHHHHHHH--HHHHHHHHHHHHHHhc----ccceeeEEEEE-Ec
Confidence 3445555433221 11222333322 1222223334444433 22333333332 36
Q ss_pred CHHHHHHHHHHHHHcCCcE
Q 019890 275 TPDQVVSTMEKVRAAGVDV 293 (334)
Q Consensus 275 TdEE~~etl~~Lre~gvd~ 293 (334)
..|.+.+.+..++.+|++.
T Consensus 327 ~~e~a~~~~~~~~klg~~i 345 (382)
T COG1423 327 SEETAEEFLDHLKKLGVHI 345 (382)
T ss_pred CHHHHHHHHHHHHHhCCce
Confidence 7788888888999999984
No 298
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=54.98 E-value=88 Score=28.37 Aligned_cols=102 Identities=18% Similarity=0.222 Sum_probs=54.2
Q ss_pred HHHHHHHHHCCCcEEEEeeecCCC---C----------CCchHHHHHHHHHHHHhhCCCCceeeeeccccccccccchhh
Q 019890 163 TNVAEAIASWGLDYVVITSVDRDD---L----------ADQGSGHFAQTVRKLKELKPNMLIEALVAKSGLNVFAHNIET 229 (334)
Q Consensus 163 ~~~A~av~~~GlkeVVLTSv~rdD---l----------~d~Ga~~fa~lIr~Ik~~~P~i~vE~Ll~~ag~dv~~HnlET 229 (334)
-++|+.+...|++.++|.-.+.-+ + .|-|...-..+.++|++.+|++.|+..- ..+. .+.+.
T Consensus 32 sevak~L~~~GVg~i~lvD~d~ve~snl~rq~~~~~~~~~iG~~Ka~~~~~~L~~lNp~v~i~~~~--~~~~---~~~~~ 106 (198)
T cd01485 32 AEIAKNLVLAGIDSITIVDHRLVSTEDLGSNFFLDAEVSNSGMNRAAASYEFLQELNPNVKLSIVE--EDSL---SNDSN 106 (198)
T ss_pred HHHHHHHHHcCCCEEEEEECCcCChhcCcccEecccchhhcCchHHHHHHHHHHHHCCCCEEEEEe--cccc---cchhh
Confidence 367888899999998885433211 1 1223333445677788889998887651 1110 01122
Q ss_pred HHHHHHhh---cCCCCCHHHHHHHHHHHHHhCCCcceEeeceEEec
Q 019890 230 VEELQSAV---RDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC 272 (334)
Q Consensus 230 v~~l~~~V---r~r~~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGl 272 (334)
.+.++... -+-..+++..+.+-+.+++. ++..=+....|+
T Consensus 107 ~~~~~~~~dvVi~~~d~~~~~~~ln~~c~~~---~ip~i~~~~~G~ 149 (198)
T cd01485 107 IEEYLQKFTLVIATEENYERTAKVNDVCRKH---HIPFISCATYGL 149 (198)
T ss_pred HHHHHhCCCEEEECCCCHHHHHHHHHHHHHc---CCCEEEEEeecC
Confidence 33333321 11234566666666666664 233333344555
No 299
>TIGR00695 uxuA mannonate dehydratase. This Fe2+-requiring enzyme plays a role in D-glucuronate catabolism in Escherichia coli. Mannonate dehydratase converts D-mannonate to 2-dehydro-3-deoxy-D-gluconate. An apparent equivalog is found in a glucuronate utilization operon in Bacillus stearothermophilus T-6.
Probab=54.94 E-value=35 Score=34.86 Aligned_cols=28 Identities=32% Similarity=0.318 Sum_probs=24.2
Q ss_pred CCCchhHHHHHHHHHHCCCcEEEEeeec
Q 019890 156 PPDPDEPTNVAEAIASWGLDYVVITSVD 183 (334)
Q Consensus 156 ~ld~~Ep~~~A~av~~~GlkeVVLTSv~ 183 (334)
.-+.+++.+.-+.+.+.|++--|+-|+.
T Consensus 39 vW~~~~i~~~k~~ie~~GL~~~vvEs~p 66 (394)
T TIGR00695 39 VWEKEEIRKRKEYIESAGLHWSVVESVP 66 (394)
T ss_pred CCCHHHHHHHHHHHHHcCCeEEEEeCCC
Confidence 4578899999999999999998888875
No 300
>cd07942 DRE_TIM_LeuA Mycobacterium tuberculosis LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Alpha-isopropylmalate synthase (LeuA), a key enzyme in leucine biosynthesis, catalyzes the first committed step in the pathway, converting acetyl-CoA and alpha-ketoisovalerate to alpha-isopropyl malate and CoA. Although the reaction catalyzed by LeuA is similar to that of the Arabidopsis thaliana IPMS1 protein, the two fall into phylogenetically distinct families within the same superfamily. LeuA has and N-terminal TIM barrel catalytic domain, a helical linker domain, and a C-terminal regulatory domain. LeuA forms a homodimer in which the linker domain of one monomer sits over the catalytic domain of the other, inserting residues into the active site that may be important for catalysis. Homologs of LeuA are found in bacteria as well as fungi. This family includes alpha-isopropylmalate synthases I (LEU4) and II (LEU9) from Saccharomyces cerevisiae. This family belong
Probab=54.93 E-value=2.1e+02 Score=27.78 Aligned_cols=129 Identities=13% Similarity=0.154 Sum_probs=73.9
Q ss_pred CCCchhHHHHHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhh---CCCCceeee----------eccc--cc
Q 019890 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKEL---KPNMLIEAL----------VAKS--GL 220 (334)
Q Consensus 156 ~ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~---~P~i~vE~L----------l~~a--g~ 220 (334)
+.+.++-.++|+.+.+.|+++|-++- |..+... .+.++.|.+. .++..+-.+ ..++ +.
T Consensus 19 ~~s~~~Ki~ia~~L~~~Gv~~IE~gf------P~~~~~e-~e~~~~i~~~~~~~~~~~~~al~r~~~~die~a~~~~~~~ 91 (284)
T cd07942 19 PMSVEQKLRFFKLLVKIGFKEIEVGF------PSASQTD-FDFVRELIEEDLIPDDVTIQVLTQAREDLIERTFEALRGA 91 (284)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeC------CCCCHHH-HHHHHHHHHccCCCCCCEEEEEcCCChhhHHHHHHHhCCC
Confidence 57899999999999999999987752 3222121 2566666443 123433333 2222 33
Q ss_pred c--ccccchhhHHH-HHHhhcCCCCCHHHHH----HHHHHHHHhCCCcc-eEeeceEEec-C----CCH-HHHHHHHHHH
Q 019890 221 N--VFAHNIETVEE-LQSAVRDHRANFKQSL----DVLMMAKDYVPAGT-LTKTSIMLGC-G----ETP-DQVVSTMEKV 286 (334)
Q Consensus 221 d--v~~HnlETv~~-l~~~Vr~r~~tye~sL----~vL~~ak~~~p~Gl-~tkTgiMVGl-G----ETd-EE~~etl~~L 286 (334)
+ .++..+-+++. +...++ .+.++.+ +.++.+|+. |+ .+.+++.+=| | .++ +.+.+.++.+
T Consensus 92 ~~~~v~i~~~~Sd~h~~~~~~---~s~~e~~~~~~~~v~~a~~~---g~~~~~~~~~~~~~~EDasr~~~~~l~~~~~~~ 165 (284)
T cd07942 92 KKAIVHLYNATSPLQRRVVFG---KSKEEIIEIAVDGAKLVKEL---AAKYPETDWRFEYSPESFSDTELDFALEVCEAV 165 (284)
T ss_pred CCCEEEEEEcCCHHHHHHHhC---CCHHHHHHHHHHHHHHHHHh---cccccCceEEEEECCccCCCCCHHHHHHHHHHH
Confidence 3 24333334433 333343 4455555 455666764 33 2356777777 7 464 5577777787
Q ss_pred HHc---CCc---EEeec
Q 019890 287 RAA---GVD---VMTFG 297 (334)
Q Consensus 287 re~---gvd---~vtig 297 (334)
.++ |++ .+.+.
T Consensus 166 ~~~~~~g~~~~~~i~la 182 (284)
T cd07942 166 IDVWQPTPENKIILNLP 182 (284)
T ss_pred HHhhcCCCCcceEEEcc
Confidence 776 554 65553
No 301
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=54.65 E-value=1.1e+02 Score=29.45 Aligned_cols=52 Identities=15% Similarity=0.238 Sum_probs=37.1
Q ss_pred HHHHHHHHHhCCCcceEeeceEEe----cCCCHHHHHHHHHHHHHcCCcEEeeccC
Q 019890 248 LDVLMMAKDYVPAGTLTKTSIMLG----CGETPDQVVSTMEKVRAAGVDVMTFGQY 299 (334)
Q Consensus 248 L~vL~~ak~~~p~Gl~tkTgiMVG----lGETdEE~~etl~~Lre~gvd~vtigqY 299 (334)
+++++.+++..+.++.+...+=.+ -|.|.+|..+.++.|.+.|+|.+++...
T Consensus 195 ~eii~avr~~~g~d~~i~vris~~~~~~~g~~~~e~~~la~~l~~~G~d~i~vs~g 250 (327)
T cd02803 195 LEIVAAVREAVGPDFPVGVRLSADDFVPGGLTLEEAIEIAKALEEAGVDALHVSGG 250 (327)
T ss_pred HHHHHHHHHHcCCCceEEEEechhccCCCCCCHHHHHHHHHHHHHcCCCEEEeCCC
Confidence 688888888764334333322221 2568999999999999999999987654
No 302
>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds. Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).
Probab=54.59 E-value=35 Score=32.31 Aligned_cols=55 Identities=11% Similarity=0.099 Sum_probs=43.0
Q ss_pred CCCHHHHHHHHHHHHHhCCCcceEeeceEEecCCCHHHHHHHHHHHHHcCCcEEee
Q 019890 241 RANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTF 296 (334)
Q Consensus 241 ~~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGlGETdEE~~etl~~Lre~gvd~vti 296 (334)
..+.++.+..++.+.+..+. ..+-.|+=.|+|++.+++.++.+.+.+.|++-|+|
T Consensus 54 ~vtl~em~~~~~~I~r~~~~-~pviaD~~~G~g~~~~~~~~~~~~l~~aGa~gv~i 108 (240)
T cd06556 54 PYPVNDVPYHVRAVRRGAPL-ALIVADLPFGAYGAPTAAFELAKTFMRAGAAGVKI 108 (240)
T ss_pred CcCHHHHHHHHHHHHhhCCC-CCEEEeCCCCCCcCHHHHHHHHHHHHHcCCcEEEE
Confidence 35677777777777776554 56778888888888888888888888888888888
No 303
>TIGR01212 radical SAM protein, TIGR01212 family. This uncharacterized protein family shows significant similarity to TIGR01211, a longer protein that is a histone acetyltransferase at its C-terminus and is a subunit of RNA polymerase II (in yeast). This family lacks the GNAT acetyltransferase domain.
Probab=54.30 E-value=1.2e+02 Score=29.31 Aligned_cols=87 Identities=8% Similarity=0.093 Sum_probs=56.3
Q ss_pred CCCCHHHHHHHHHHHHHhCCCcceEeeceEEecC----------C----CHHH-HHHHHHHHHHcCCcEEeeccCcCCCC
Q 019890 240 HRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCG----------E----TPDQ-VVSTMEKVRAAGVDVMTFGQYMRPSK 304 (334)
Q Consensus 240 r~~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGlG----------E----TdEE-~~etl~~Lre~gvd~vtigqYlrP~~ 304 (334)
++.+.++.++.++.+.+..|+++.+ ..+++==| + +++| +..+..+|+.+..+.+ |+....-..
T Consensus 188 Pget~e~~~~t~~~l~~l~~d~i~i-~~l~~~pgT~L~~~~~~g~~~~~~~~e~~~~~~~~l~~l~~~~~-i~Rl~~~~~ 265 (302)
T TIGR01212 188 PGEDREEMMETAKIVSLLDVDGIKI-HPLHVVKGTKMAKMYEKGELKTLSLEEYISLACDFLEHLPPEVV-IHRISGDAP 265 (302)
T ss_pred CCCCHHHHHHHHHHHHhcCCCEEEE-EEEEecCCCHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCcCeE-EEEecCCCC
Confidence 5778889999999999887775433 22222112 1 4455 6667778888887754 554444344
Q ss_pred CCCcccccCCHHHHHHHHHHHHHh
Q 019890 305 RHMPVSEYITPEAFERYRALGMEM 328 (334)
Q Consensus 305 ~h~~v~~yv~P~~f~~~~~~a~~~ 328 (334)
+.+.|....+-++.+.+.++-.+|
T Consensus 266 ~~~~l~~~~~~~k~~~l~~i~~~l 289 (302)
T TIGR01212 266 RETLIAPEWCKNKWEIMNKISEEL 289 (302)
T ss_pred ccceEcccccccHHHHHHHHHHHH
Confidence 667777666667777777776666
No 304
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=53.67 E-value=62 Score=27.71 Aligned_cols=41 Identities=15% Similarity=0.161 Sum_probs=29.2
Q ss_pred HHHHHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhCC
Q 019890 162 PTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKP 207 (334)
Q Consensus 162 p~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~P 207 (334)
+++.++++.+.+.+-|+|.|-+. .-...+.+++++|++..+
T Consensus 42 ~e~~v~aa~e~~adii~iSsl~~-----~~~~~~~~~~~~L~~~g~ 82 (132)
T TIGR00640 42 PEEIARQAVEADVHVVGVSSLAG-----GHLTLVPALRKELDKLGR 82 (132)
T ss_pred HHHHHHHHHHcCCCEEEEcCchh-----hhHHHHHHHHHHHHhcCC
Confidence 34556666788999999988541 124568889999988654
No 305
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=53.28 E-value=40 Score=34.88 Aligned_cols=153 Identities=20% Similarity=0.195 Sum_probs=85.7
Q ss_pred EeecCCCCCCCCCcccCCCCCCCCCCchhHHHHHHHHHHCCCcEEEEeeecCCCCC-CchHHHHHHHHHHHHhhCCCCce
Q 019890 133 MILGDTCTRGCRFCNVKTSRAPPPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLA-DQGSGHFAQTVRKLKELKPNMLI 211 (334)
Q Consensus 133 m~igdgCtr~C~FC~V~~~r~p~~ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~-d~Ga~~fa~lIr~Ik~~~P~i~v 211 (334)
+.|.|++-|+=.-|-+.+ .+..++..-+++++.+.|+-..-.=|+..-|-- .+-.+.=.+-+|+||+..|+..+
T Consensus 6 i~itdt~lRDghQSl~AT-----Rmrt~DmlPi~e~lD~~G~~slE~WGGATFDaciRfLnEDPWeRLr~lk~~~~nT~L 80 (472)
T COG5016 6 IKITDTVLRDGHQSLLAT-----RMRTEDMLPIAEALDKVGYWSLEVWGGATFDACIRFLNEDPWERLRELKKAVPNTKL 80 (472)
T ss_pred eeeEeeeechHHHHHHHH-----HHhHHhhHHHHHHHHhcCeeEEEecCCccHHHHHHHhcCCHHHHHHHHHHhCCCcHH
Confidence 445666655544333322 367888899999999999877655444321000 00001113567778888888776
Q ss_pred eeeeccccccccccchh-hHH--------------HHHHhhcCCCCCHHHHHHHHHHHHHhCCCcceEeeceEEec--CC
Q 019890 212 EALVAKSGLNVFAHNIE-TVE--------------ELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC--GE 274 (334)
Q Consensus 212 E~Ll~~ag~dv~~HnlE-Tv~--------------~l~~~Vr~r~~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGl--GE 274 (334)
..|+.--++--|-|.-+ .|+ |+|..++| ..+.+.+++..+ +. |..+-..|-.-. --
T Consensus 81 QMLlRGQNlvGYrhyaDDvVe~Fv~ka~~nGidvfRiFDAlND-~RNl~~ai~a~k---k~---G~h~q~~i~YT~sPvH 153 (472)
T COG5016 81 QMLLRGQNLVGYRHYADDVVEKFVEKAAENGIDVFRIFDALND-VRNLKTAIKAAK---KH---GAHVQGTISYTTSPVH 153 (472)
T ss_pred HHHHccCccccccCCchHHHHHHHHHHHhcCCcEEEechhccc-hhHHHHHHHHHH---hc---CceeEEEEEeccCCcc
Confidence 66633333333444421 111 45556664 445555554443 32 333333333333 56
Q ss_pred CHHHHHHHHHHHHHcCCcEEeec
Q 019890 275 TPDQVVSTMEKVRAAGVDVMTFG 297 (334)
Q Consensus 275 TdEE~~etl~~Lre~gvd~vtig 297 (334)
|-+-.++..+.|.++|+|++.|=
T Consensus 154 t~e~yv~~akel~~~g~DSIciK 176 (472)
T COG5016 154 TLEYYVELAKELLEMGVDSICIK 176 (472)
T ss_pred cHHHHHHHHHHHHHcCCCEEEee
Confidence 77788888888888888888773
No 306
>PRK14847 hypothetical protein; Provisional
Probab=53.28 E-value=2.4e+02 Score=28.20 Aligned_cols=126 Identities=17% Similarity=0.125 Sum_probs=67.5
Q ss_pred CCCchhHHHHHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhCC---CCceeee--------------eccc
Q 019890 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKP---NMLIEAL--------------VAKS 218 (334)
Q Consensus 156 ~ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~P---~i~vE~L--------------l~~a 218 (334)
+.+++|=.++|+.+.++|+++|-+- .|--+...+ +.|++|.+... +..+.++ ..++
T Consensus 50 ~fs~eeKl~IA~~L~~lGVd~IEvG------~Pa~s~~e~-e~ir~I~~~~~~~~~~~i~~~~r~~~~dId~a~e~~~~~ 122 (333)
T PRK14847 50 PMDGARKLRLFEQLVAVGLKEIEVA------FPSASQTDF-DFVRKLIDERRIPDDVTIEALTQSRPDLIARTFEALAGS 122 (333)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEee------CCCCCHHHH-HHHHHHHHhCCCCCCcEEEEEecCcHHHHHHHHHHhCCC
Confidence 5889999999999999999998662 233333333 56777755421 3445444 2222
Q ss_pred cccccccchhhHHHHHHhhcCCCCCHHHHH----HHHHHHHHhCCCcceE-ee--ceEEec---CCCHHHHHH-HHHHHH
Q 019890 219 GLNVFAHNIETVEELQSAVRDHRANFKQSL----DVLMMAKDYVPAGTLT-KT--SIMLGC---GETPDQVVS-TMEKVR 287 (334)
Q Consensus 219 g~dv~~HnlETv~~l~~~Vr~r~~tye~sL----~vL~~ak~~~p~Gl~t-kT--giMVGl---GETdEE~~e-tl~~Lr 287 (334)
+.++++-.+-+++-.....- +.+.++-+ +.++.||+.. ... +. .+-+|. .-|+-+|+. .++.+.
T Consensus 123 ~~~~Vhi~~p~Sd~h~~~kl--~~s~~~vl~~~~~~v~~Ak~~~---~~~~g~~~~V~~~~EDasRad~dfL~~~~~~a~ 197 (333)
T PRK14847 123 PRAIVHLYNPIAPQWRRIVF--GMSRAEIKEIALAGTRQIRALA---DANPGTQWIYEYSPETFSLAELDFAREVCDAVS 197 (333)
T ss_pred CCCEEEEEecCCHHHHHHHh--CCCHHHHHHHHHHHHHHHHHhc---cccCCCceEEEEeeecCCCCCHHHHHHHHHHHH
Confidence 33445555555543333221 24555555 5666777752 211 11 245555 446555544 444443
Q ss_pred Hc-CCcE
Q 019890 288 AA-GVDV 293 (334)
Q Consensus 288 e~-gvd~ 293 (334)
+. |.+.
T Consensus 198 ~~~ga~r 204 (333)
T PRK14847 198 AIWGPTP 204 (333)
T ss_pred HHhCCCc
Confidence 44 6443
No 307
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=53.26 E-value=34 Score=34.29 Aligned_cols=51 Identities=20% Similarity=0.265 Sum_probs=36.7
Q ss_pred HHHHHHHHHhCCCcce--Eeec------eEEecCCCHHHHHHHHHHHHHcCCcEEeecc
Q 019890 248 LDVLMMAKDYVPAGTL--TKTS------IMLGCGETPDQVVSTMEKVRAAGVDVMTFGQ 298 (334)
Q Consensus 248 L~vL~~ak~~~p~Gl~--tkTg------iMVGlGETdEE~~etl~~Lre~gvd~vtigq 298 (334)
+++++.+|+..+..+. ++-+ .+.+.|.|.+|..+.++.|.+.|+|.+++..
T Consensus 198 ~eii~air~~vG~d~~v~vRis~~~~~~~~~~~g~~~~e~~~~~~~l~~~gvd~i~vs~ 256 (361)
T cd04747 198 AEVVKAIRAAVGPDFPIILRFSQWKQQDYTARLADTPDELEALLAPLVDAGVDIFHCST 256 (361)
T ss_pred HHHHHHHHHHcCCCCeEEEEECcccccccccCCCCCHHHHHHHHHHHHHcCCCEEEecC
Confidence 5788888887642232 2333 2234578999999999999999999998843
No 308
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=53.10 E-value=1.2e+02 Score=28.51 Aligned_cols=83 Identities=14% Similarity=0.119 Sum_probs=59.6
Q ss_pred CCHHHHHHHHHHHHHhCCCcceEeeceEEecCCCHHHHHHHHHHHHHcCCcEEeeccCcCCC-CCCCcccccCCHHHHHH
Q 019890 242 ANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRPS-KRHMPVSEYITPEAFER 320 (334)
Q Consensus 242 ~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGlGETdEE~~etl~~Lre~gvd~vtigqYlrP~-~~h~~v~~yv~P~~f~~ 320 (334)
.++++.++.++.+..... +.+-.++=.|+| ..+++.++.+.+.+.|++-++|=-...|. ..|+.-...++++++..
T Consensus 52 ~~~~e~~~~~~~I~~~~~--~Pv~~D~~~G~g-~~~~~~~~v~~~~~~G~~gv~iED~~~~k~~g~~~~~~~~~~ee~~~ 128 (243)
T cd00377 52 LTLDEVLAAVRRIARAVD--LPVIADADTGYG-NALNVARTVRELEEAGAAGIHIEDQVGPKKCGHHGGKVLVPIEEFVA 128 (243)
T ss_pred CCHHHHHHHHHHHHhhcc--CCEEEEcCCCCC-CHHHHHHHHHHHHHcCCEEEEEecCCCCccccCCCCCeecCHHHHHH
Confidence 456666666666665432 456777777998 44899999999999999999995444444 35777777889988776
Q ss_pred HHHHHHH
Q 019890 321 YRALGME 327 (334)
Q Consensus 321 ~~~~a~~ 327 (334)
-=+.+.+
T Consensus 129 ki~aa~~ 135 (243)
T cd00377 129 KIKAARD 135 (243)
T ss_pred HHHHHHH
Confidence 5555544
No 309
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=52.87 E-value=47 Score=33.56 Aligned_cols=54 Identities=13% Similarity=0.123 Sum_probs=42.6
Q ss_pred CCHHHHHHHHHHHHHhCCCcceEeeceEEec-CC-CHHHHHHHHHHHHHcCCcEEeeccCc
Q 019890 242 ANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC-GE-TPDQVVSTMEKVRAAGVDVMTFGQYM 300 (334)
Q Consensus 242 ~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGl-GE-TdEE~~etl~~Lre~gvd~vtigqYl 300 (334)
...+++++.++++++..++ .-+|+++ |. +.+++.+..+.+++.++|.+-++-..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~-----~p~i~si~g~~~~~~~~~~a~~~~~~g~d~ielN~sc 136 (420)
T PRK08318 81 RPLEVNLREIRRVKRDYPD-----RALIASIMVECNEEEWKEIAPLVEETGADGIELNFGC 136 (420)
T ss_pred cCHHHHHHHHHHHHhhCCC-----ceEEEEeccCCCHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 4567778877777664443 2378897 98 99999999999999999999998554
No 310
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=52.80 E-value=31 Score=31.79 Aligned_cols=121 Identities=14% Similarity=0.242 Sum_probs=69.7
Q ss_pred CCchhHHHHHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhCCCC--ceeee----------eccccccccc
Q 019890 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNM--LIEAL----------VAKSGLNVFA 224 (334)
Q Consensus 157 ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~P~i--~vE~L----------l~~ag~dv~~ 224 (334)
.|...+.++++.+.+.|++++-+==.|.--.|..+. =.++|++|++. +++ .|++. +.++|.+.+.
T Consensus 9 ad~~~l~~~i~~l~~~g~d~lHiDiMDg~fvpn~~~--g~~~i~~i~~~-~~~~~DvHLMv~~P~~~i~~~~~~g~~~i~ 85 (201)
T PF00834_consen 9 ADFLNLEEEIKRLEEAGADWLHIDIMDGHFVPNLTF--GPDIIKAIRKI-TDLPLDVHLMVENPERYIEEFAEAGADYIT 85 (201)
T ss_dssp S-GGGHHHHHHHHHHTT-SEEEEEEEBSSSSSSB-B---HHHHHHHHTT-SSSEEEEEEESSSGGGHHHHHHHHT-SEEE
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeecccccCCcccC--CHHHHHHHhhc-CCCcEEEEeeeccHHHHHHHHHhcCCCEEE
Confidence 467788999999999999988773333222233221 15778888875 443 44443 6777888777
Q ss_pred cchhhHHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCcceEeeceEEecCCCHHHHHHHHHHHHHcCCcEEeeccCcCCCC
Q 019890 225 HNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRPSK 304 (334)
Q Consensus 225 HnlETv~~l~~~Vr~r~~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGlGETdEE~~etl~~Lre~gvd~vtigqYlrP~~ 304 (334)
-+.|+.+. ..++|+.+|+. | .+.|+.+--+-.-+.+...+. .+|.|.+-. ..|+.
T Consensus 86 ~H~E~~~~--------------~~~~i~~ik~~---g--~k~GialnP~T~~~~~~~~l~-----~vD~VlvMs-V~PG~ 140 (201)
T PF00834_consen 86 FHAEATED--------------PKETIKYIKEA---G--IKAGIALNPETPVEELEPYLD-----QVDMVLVMS-VEPGF 140 (201)
T ss_dssp EEGGGTTT--------------HHHHHHHHHHT---T--SEEEEEE-TTS-GGGGTTTGC-----CSSEEEEES-S-TTT
T ss_pred EcccchhC--------------HHHHHHHHHHh---C--CCEEEEEECCCCchHHHHHhh-----hcCEEEEEE-ecCCC
Confidence 66664322 23566777774 5 577777766654444443332 477777753 35654
Q ss_pred C
Q 019890 305 R 305 (334)
Q Consensus 305 ~ 305 (334)
.
T Consensus 141 ~ 141 (201)
T PF00834_consen 141 G 141 (201)
T ss_dssp S
T ss_pred C
Confidence 4
No 311
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=52.76 E-value=95 Score=30.42 Aligned_cols=102 Identities=19% Similarity=0.221 Sum_probs=56.3
Q ss_pred CCCchHHHHHHHHHHHHhhCCC-Cceeee-------------eccccccccccchhhHHHHHHhhcCCCCCH-HHHHHHH
Q 019890 187 LADQGSGHFAQTVRKLKELKPN-MLIEAL-------------VAKSGLNVFAHNIETVEELQSAVRDHRANF-KQSLDVL 251 (334)
Q Consensus 187 l~d~Ga~~fa~lIr~Ik~~~P~-i~vE~L-------------l~~ag~dv~~HnlETv~~l~~~Vr~r~~ty-e~sL~vL 251 (334)
++..|.+.+.+.++.+++.... +.+.+- +.++|.|.+.-|+-..+ .....+ .... +...+++
T Consensus 81 l~n~g~d~~~~~i~~~~~~~~~pvi~sI~g~~~~e~~~~a~~~~~agad~ielN~scpp-~~~~~~--g~~~~~~~~eil 157 (334)
T PRK07565 81 KFYVGPEEYLELIRRAKEAVDIPVIASLNGSSAGGWVDYARQIEQAGADALELNIYYLP-TDPDIS--GAEVEQRYLDIL 157 (334)
T ss_pred ccCcCHHHHHHHHHHHHHhcCCcEEEEeccCCHHHHHHHHHHHHHcCCCEEEEeCCCCC-CCCCCc--cccHHHHHHHHH
Confidence 3445667788888777654311 111221 55567777766642111 111111 2223 3466888
Q ss_pred HHHHHhCCCcceEeeceEEecCCCHHHHHHHHHHHHHcCCcEEeec
Q 019890 252 MMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFG 297 (334)
Q Consensus 252 ~~ak~~~p~Gl~tkTgiMVGlGETdEE~~etl~~Lre~gvd~vtig 297 (334)
+.+++...-=+.+|-+. ..+++.+..+.|++.|+|-|.+.
T Consensus 158 ~~v~~~~~iPV~vKl~p------~~~~~~~~a~~l~~~G~dgI~~~ 197 (334)
T PRK07565 158 RAVKSAVSIPVAVKLSP------YFSNLANMAKRLDAAGADGLVLF 197 (334)
T ss_pred HHHHhccCCcEEEEeCC------CchhHHHHHHHHHHcCCCeEEEE
Confidence 88887532113455322 12367888899999999988875
No 312
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=52.63 E-value=1.6e+02 Score=26.89 Aligned_cols=190 Identities=11% Similarity=0.119 Sum_probs=92.7
Q ss_pred CCCCcchHHHHHHHhhcCchhhhhccCCCC-CcccccCCCCCcceEEEEeecCCCCCCCCCcccCCCCCCCCCCchhHHH
Q 019890 86 IPGGDKYVQIKKKLRELKLHTVCEEAKCPN-LGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRAPPPPDPDEPTN 164 (334)
Q Consensus 86 ~p~~~~~~~~~~~l~~~~L~Tvceea~cpn-i~ec~~~~~~~~~Tatfm~igdgCtr~C~FC~V~~~r~p~~ld~~Ep~~ 164 (334)
.+..++..++-+...+.+...||-...==. -.+-+.++ +.-++.+. .| +.++. | ..+......
T Consensus 17 ~~~~~d~~~~~~~~~~~g~~av~v~~~~~~~~~~~~~~~-----~~~i~~~~-~~------~~i~~---p-~~~~~~~~~ 80 (235)
T cd00958 17 NPGLEDPEETVKLAAEGGADAVALTKGIARAYGREYAGD-----IPLIVKLN-GS------TSLSP---K-DDNDKVLVA 80 (235)
T ss_pred CccccCHHHHHHHHHhcCCCEEEeChHHHHhcccccCCC-----CcEEEEEC-CC------CCCCC---C-CCCchhhhc
Confidence 344556677777777777777755410000 01112221 23333332 11 12332 1 244555566
Q ss_pred HHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhCCCCceeeee--cccccc----ccccchhhHHHHHHhhc
Q 019890 165 VAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALV--AKSGLN----VFAHNIETVEELQSAVR 238 (334)
Q Consensus 165 ~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~P~i~vE~Ll--~~ag~d----v~~HnlETv~~l~~~Vr 238 (334)
.++.+.+.|...|.++-... ++. ...+.+.++++.+...+..+.+++ ...|.. .-.+.++..-++.....
T Consensus 81 ~v~~a~~~Ga~~v~~~~~~~-~~~---~~~~~~~i~~v~~~~~~~g~~~iie~~~~g~~~~~~~~~~~i~~~~~~a~~~G 156 (235)
T cd00958 81 SVEDAVRLGADAVGVTVYVG-SEE---EREMLEELARVAAEAHKYGLPLIAWMYPRGPAVKNEKDPDLIAYAARIGAELG 156 (235)
T ss_pred CHHHHHHCCCCEEEEEEecC-Cch---HHHHHHHHHHHHHHHHHcCCCEEEEEeccCCcccCccCHHHHHHHHHHHHHHC
Confidence 67778899999885544322 121 234444555555433222223321 001111 01123332111222211
Q ss_pred C--CCCCHHHHHHHHHHHHHhCCCcceEeeceEEe-cC-CCHHHHHHHHHHHHHcCCcEEeeccCc
Q 019890 239 D--HRANFKQSLDVLMMAKDYVPAGTLTKTSIMLG-CG-ETPDQVVSTMEKVRAAGVDVMTFGQYM 300 (334)
Q Consensus 239 ~--r~~tye~sL~vL~~ak~~~p~Gl~tkTgiMVG-lG-ETdEE~~etl~~Lre~gvd~vtigqYl 300 (334)
. =+-.|..-++.++++.+..|- .+ ++.| .+ .|.+|+.+.++.+.+.|++.+.+|..+
T Consensus 157 aD~Ik~~~~~~~~~~~~i~~~~~~--pv---v~~GG~~~~~~~~~l~~~~~~~~~Ga~gv~vg~~i 217 (235)
T cd00958 157 ADIVKTKYTGDAESFKEVVEGCPV--PV---VIAGGPKKDSEEEFLKMVYDAMEAGAAGVAVGRNI 217 (235)
T ss_pred CCEEEecCCCCHHHHHHHHhcCCC--CE---EEeCCCCCCCHHHHHHHHHHHHHcCCcEEEechhh
Confidence 0 000122236777777775443 22 3335 33 599999999999999999999999765
No 313
>COG0685 MetF 5,10-methylenetetrahydrofolate reductase [Amino acid transport and metabolism]
Probab=52.48 E-value=1.6e+02 Score=28.64 Aligned_cols=52 Identities=13% Similarity=0.126 Sum_probs=38.1
Q ss_pred CCchhHHHHHHHHHHCCCcEEEEeeecC--CCCCCchHHHHHHHHHHHHhhCCC
Q 019890 157 PDPDEPTNVAEAIASWGLDYVVITSVDR--DDLADQGSGHFAQTVRKLKELKPN 208 (334)
Q Consensus 157 ld~~Ep~~~A~av~~~GlkeVVLTSv~r--dDl~d~Ga~~fa~lIr~Ik~~~P~ 208 (334)
.+..++....+...+.|+++|+++.+|- +|.+..-..+-.++|+.||....+
T Consensus 89 ~n~~~i~~~l~~~~~~Gi~~ilaLrGDpp~g~~~~~~~~~s~dLv~lik~~~~~ 142 (291)
T COG0685 89 RNRIEIISILKGAAALGIRNILALRGDPPAGDKPGGKDLYSVDLVELIKKMRGG 142 (291)
T ss_pred CCHHHHHHHHHHHHHhCCceEEEecCCCCCCCCCCccccCHHHHHHHHHHhcCC
Confidence 4688999999999999999999998886 333322023456888888876544
No 314
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=52.04 E-value=1.5e+02 Score=25.38 Aligned_cols=118 Identities=12% Similarity=0.175 Sum_probs=63.8
Q ss_pred CchhHHHHHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhCCCCceeee---------------------ec
Q 019890 158 DPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEAL---------------------VA 216 (334)
Q Consensus 158 d~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~P~i~vE~L---------------------l~ 216 (334)
|.+.+.+.++.+.+.|++-+++++ ++++.+.+..++..+.++ ..
T Consensus 11 d~~~~~~~~~~~~~~gv~gi~~~g---------------~~i~~~~~~~~~~~~~v~~~v~~~~~~~~~~~~~~~a~~a~ 75 (201)
T cd00945 11 TLEDIAKLCDEAIEYGFAAVCVNP---------------GYVRLAADALAGSDVPVIVVVGFPTGLTTTEVKVAEVEEAI 75 (201)
T ss_pred CHHHHHHHHHHHHHhCCcEEEECH---------------HHHHHHHHHhCCCCCeEEEEecCCCCCCcHHHHHHHHHHHH
Confidence 788899999999999999888876 333333333222011111 22
Q ss_pred cccccccccchhhHHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCcceEeeceEEecCCCHHHHHHHHHHHHHcCCcEEee
Q 019890 217 KSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTF 296 (334)
Q Consensus 217 ~ag~dv~~HnlETv~~l~~~Vr~r~~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGlGETdEE~~etl~~Lre~gvd~vti 296 (334)
+.|.|.+.-. +..|.. ...+.+.-++.++.+.+..+.++.+--..+.+.--+.+++.+..+.+.+.|++.+-.
T Consensus 76 ~~Gad~i~v~----~~~~~~---~~~~~~~~~~~~~~i~~~~~~~~pv~iy~~p~~~~~~~~~~~~~~~~~~~g~~~iK~ 148 (201)
T cd00945 76 DLGADEIDVV----INIGSL---KEGDWEEVLEEIAAVVEAADGGLPLKVILETRGLKTADEIAKAARIAAEAGADFIKT 148 (201)
T ss_pred HcCCCEEEEe----ccHHHH---hCCCHHHHHHHHHHHHHHhcCCceEEEEEECCCCCCHHHHHHHHHHHHHhCCCEEEe
Confidence 3333332210 111111 111244555666666554311355444444333236778888888888899998865
Q ss_pred c
Q 019890 297 G 297 (334)
Q Consensus 297 g 297 (334)
+
T Consensus 149 ~ 149 (201)
T cd00945 149 S 149 (201)
T ss_pred C
Confidence 4
No 315
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=51.75 E-value=1.8e+02 Score=27.93 Aligned_cols=124 Identities=12% Similarity=0.231 Sum_probs=72.4
Q ss_pred CCCCCCCCcccCCCCC--CCCCCchhHHHHHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhCCCCceeee-
Q 019890 138 TCTRGCRFCNVKTSRA--PPPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEAL- 214 (334)
Q Consensus 138 gCtr~C~FC~V~~~r~--p~~ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~P~i~vE~L- 214 (334)
|-.+.|..|+-.-..+ -+.++++|..+..+.+++.|+..|.|.+-+. + .+.|+.|.+...+. ++
T Consensus 107 G~e~F~~~~~~aGvdgviipDLP~ee~~~~~~~~~~~gi~~I~lv~PtT---~-------~eri~~i~~~a~gF---IY~ 173 (263)
T CHL00200 107 GINKFIKKISQAGVKGLIIPDLPYEESDYLISVCNLYNIELILLIAPTS---S-------KSRIQKIARAAPGC---IYL 173 (263)
T ss_pred CHHHHHHHHHHcCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEEECCCC---C-------HHHHHHHHHhCCCc---EEE
Confidence 5556666664332221 1346778888888999999999999987653 1 23445555543332 11
Q ss_pred eccccccccccchhhHHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCcceEeeceEEecCCC-HHHHHHHHHHHHHcCCcE
Q 019890 215 VAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGET-PDQVVSTMEKVRAAGVDV 293 (334)
Q Consensus 215 l~~ag~dv~~HnlETv~~l~~~Vr~r~~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGlGET-dEE~~etl~~Lre~gvd~ 293 (334)
+...|..--... -.++..+.++++|+. +..-+.||||=+ .|++. .+.+.|.|-
T Consensus 174 vS~~GvTG~~~~----------------~~~~~~~~i~~ir~~------t~~Pi~vGFGI~~~e~~~----~~~~~GADG 227 (263)
T CHL00200 174 VSTTGVTGLKTE----------------LDKKLKKLIETIKKM------TNKPIILGFGISTSEQIK----QIKGWNING 227 (263)
T ss_pred EcCCCCCCCCcc----------------ccHHHHHHHHHHHHh------cCCCEEEECCcCCHHHHH----HHHhcCCCE
Confidence 222232211111 112234455555552 456688999877 55544 478899999
Q ss_pred EeeccCc
Q 019890 294 MTFGQYM 300 (334)
Q Consensus 294 vtigqYl 300 (334)
+-+|..+
T Consensus 228 vVVGSal 234 (263)
T CHL00200 228 IVIGSAC 234 (263)
T ss_pred EEECHHH
Confidence 9999765
No 316
>PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B ....
Probab=51.38 E-value=1.3e+02 Score=28.43 Aligned_cols=81 Identities=16% Similarity=0.220 Sum_probs=58.0
Q ss_pred CCCHHHHHHHHHHHHHhCCCcceEeeceEEecCCCHHHHHHHHHHHHHcCCcEEeeccCcCCCCCCCcccccCCHHHHHH
Q 019890 241 RANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMPVSEYITPEAFER 320 (334)
Q Consensus 241 ~~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGlGETdEE~~etl~~Lre~gvd~vtigqYlrP~~~h~~v~~yv~P~~f~~ 320 (334)
..++++.++.++++.... + +.+-.|+=-|||.+.+.+.++.+.+.++|+.-++|--. +- .| +-...++++++..
T Consensus 51 ~lt~~e~~~~~~~I~~~~-~-iPv~vD~d~GyG~~~~~v~~tv~~~~~aG~agi~IEDq-~~--~~-~~~~l~~~ee~~~ 124 (238)
T PF13714_consen 51 LLTLTEMLAAVRRIARAV-S-IPVIVDADTGYGNDPENVARTVRELERAGAAGINIEDQ-RC--GH-GGKQLVSPEEMVA 124 (238)
T ss_dssp -S-HHHHHHHHHHHHHHS-S-SEEEEE-TTTSSSSHHHHHHHHHHHHHCT-SEEEEESB-ST--TT-STT-B--HHHHHH
T ss_pred CCCHHHHHHHHHHHHhhh-c-CcEEEEcccccCchhHHHHHHHHHHHHcCCcEEEeecc-cc--CC-CCCceeCHHHHHH
Confidence 457788888888888765 3 78899999999999999999999999999999999866 21 25 6677788877655
Q ss_pred HHHHHHH
Q 019890 321 YRALGME 327 (334)
Q Consensus 321 ~~~~a~~ 327 (334)
-=+.|.+
T Consensus 125 kI~Aa~~ 131 (238)
T PF13714_consen 125 KIRAAVD 131 (238)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444433
No 317
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=51.22 E-value=28 Score=36.07 Aligned_cols=56 Identities=18% Similarity=0.293 Sum_probs=40.9
Q ss_pred HHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhCCCCce---eee-------eccccccccccc
Q 019890 165 VAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLI---EAL-------VAKSGLNVFAHN 226 (334)
Q Consensus 165 ~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~P~i~v---E~L-------l~~ag~dv~~Hn 226 (334)
..+.+.+.|++.|||-| ..+...++.+.|+.||+.+|++.| .+. |.++|.|.+.-.
T Consensus 255 rl~ll~~aGvdvviLDS------SqGnS~~qiemik~iK~~yP~l~ViaGNVVT~~qa~nLI~aGaDgLrVG 320 (503)
T KOG2550|consen 255 RLDLLVQAGVDVVILDS------SQGNSIYQLEMIKYIKETYPDLQIIAGNVVTKEQAANLIAAGADGLRVG 320 (503)
T ss_pred HHHHhhhcCCcEEEEec------CCCcchhHHHHHHHHHhhCCCceeeccceeeHHHHHHHHHccCceeEec
Confidence 34456788999999955 334467889999999999998643 111 788888875544
No 318
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=51.20 E-value=42 Score=32.93 Aligned_cols=52 Identities=19% Similarity=0.266 Sum_probs=37.0
Q ss_pred HHHHHHHHHHhCCCcceEeeceE----EecCCCHHHHHHHHHHHHHcCCcEEeecc
Q 019890 247 SLDVLMMAKDYVPAGTLTKTSIM----LGCGETPDQVVSTMEKVRAAGVDVMTFGQ 298 (334)
Q Consensus 247 sL~vL~~ak~~~p~Gl~tkTgiM----VGlGETdEE~~etl~~Lre~gvd~vtigq 298 (334)
-+++|+.+|+..++++.+...+= +--|-|.+|..+.++.|.+.|+|.+++..
T Consensus 202 ~~EiI~aIR~avG~d~~v~vris~~~~~~~g~~~eea~~ia~~Le~~Gvd~iev~~ 257 (338)
T cd04733 202 LLEIYDAIRAAVGPGFPVGIKLNSADFQRGGFTEEDALEVVEALEEAGVDLVELSG 257 (338)
T ss_pred HHHHHHHHHHHcCCCCeEEEEEcHHHcCCCCCCHHHHHHHHHHHHHcCCCEEEecC
Confidence 36788889887754344433321 11266899999999999999999998643
No 319
>TIGR02317 prpB methylisocitrate lyase. Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus.
Probab=51.01 E-value=1.2e+02 Score=29.56 Aligned_cols=82 Identities=16% Similarity=0.176 Sum_probs=63.2
Q ss_pred CCHHHHHHHHHHHHHhCCCcceEeeceEEecCCCHHHHHHHHHHHHHcCCcEEeeccCcCCC-CCCCcccccCCHHHHHH
Q 019890 242 ANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRPS-KRHMPVSEYITPEAFER 320 (334)
Q Consensus 242 ~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGlGETdEE~~etl~~Lre~gvd~vtigqYlrP~-~~h~~v~~yv~P~~f~~ 320 (334)
.++++.++.++++.... + +.+..++=-|||+ ..++..+.+.+.++|+.-++|=--.-|. .-|++-...+++++|..
T Consensus 56 lt~~e~~~~~~~I~~~~-~-iPviaD~d~GyG~-~~~v~~tv~~~~~aG~agi~IEDq~~pK~cgh~~g~~lv~~ee~~~ 132 (285)
T TIGR02317 56 TTLDEVAEDARRITRVT-D-LPLLVDADTGFGE-AFNVARTVREMEDAGAAAVHIEDQVLPKRCGHLPGKELVSREEMVD 132 (285)
T ss_pred CCHHHHHHHHHHHHhcc-C-CCEEEECCCCCCC-HHHHHHHHHHHHHcCCeEEEEecCCCccccCCCCCccccCHHHHHH
Confidence 46777777777777654 2 6788999999999 9999999999999999999997555453 35888777888887765
Q ss_pred HHHHHH
Q 019890 321 YRALGM 326 (334)
Q Consensus 321 ~~~~a~ 326 (334)
-=+.|.
T Consensus 133 kI~Aa~ 138 (285)
T TIGR02317 133 KIAAAV 138 (285)
T ss_pred HHHHHH
Confidence 444443
No 320
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=50.95 E-value=1.1e+02 Score=27.21 Aligned_cols=109 Identities=16% Similarity=0.187 Sum_probs=59.2
Q ss_pred CCchhHHHHHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhCCCCcee--e--e---------ecccccccc
Q 019890 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIE--A--L---------VAKSGLNVF 223 (334)
Q Consensus 157 ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~P~i~vE--~--L---------l~~ag~dv~ 223 (334)
.++++..+.++++ +.|++-|=++..-. ...| .+.|+.|++.+|+..+- + + +.++|.|.+
T Consensus 9 ~~~~~a~~~~~~l-~~~v~~iev~~~l~---~~~g----~~~i~~l~~~~~~~~i~~d~k~~d~~~~~~~~~~~~Gad~i 80 (206)
T TIGR03128 9 LDIEEALELAEKV-ADYVDIIEIGTPLI---KNEG----IEAVKEMKEAFPDRKVLADLKTMDAGEYEAEQAFAAGADIV 80 (206)
T ss_pred CCHHHHHHHHHHc-ccCeeEEEeCCHHH---HHhC----HHHHHHHHHHCCCCEEEEEEeeccchHHHHHHHHHcCCCEE
Confidence 4678889999988 77877665532211 1112 47788888877753221 1 1 234444443
Q ss_pred ccchhhHHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCcceEeeceEEec---CCCHHHHHHHHHHHHHcCCcEEeec
Q 019890 224 AHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC---GETPDQVVSTMEKVRAAGVDVMTFG 297 (334)
Q Consensus 224 ~HnlETv~~l~~~Vr~r~~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGl---GETdEE~~etl~~Lre~gvd~vtig 297 (334)
.-+.++ .-..-.++++.+++. |+. +|+++ .+..+++.. +.+.|+|.+.++
T Consensus 81 ~vh~~~-------------~~~~~~~~i~~~~~~---g~~----~~~~~~~~~t~~~~~~~----~~~~g~d~v~~~ 133 (206)
T TIGR03128 81 TVLGVA-------------DDATIKGAVKAAKKH---GKE----VQVDLINVKDKVKRAKE----LKELGADYIGVH 133 (206)
T ss_pred EEeccC-------------CHHHHHHHHHHHHHc---CCE----EEEEecCCCChHHHHHH----HHHcCCCEEEEc
Confidence 322211 112234677777774 442 33453 333344433 456799999986
No 321
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway. Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.
Probab=50.95 E-value=1.1e+02 Score=29.37 Aligned_cols=128 Identities=11% Similarity=0.114 Sum_probs=62.1
Q ss_pred HHHHHHHCCCcEEEEee--ec--CCCCCCchHHHHHHHHHHHHhhCCCCceeeeeccccccccccchh----hHHHHHHh
Q 019890 165 VAEAIASWGLDYVVITS--VD--RDDLADQGSGHFAQTVRKLKELKPNMLIEALVAKSGLNVFAHNIE----TVEELQSA 236 (334)
Q Consensus 165 ~A~av~~~GlkeVVLTS--v~--rdDl~d~Ga~~fa~lIr~Ik~~~P~i~vE~Ll~~ag~dv~~HnlE----Tv~~l~~~ 236 (334)
.|+.+.+.|++-+. || +. .--++|.+.-.+.+++..++...-....-+++.|.+-.-|....| .+-+++++
T Consensus 24 sA~l~e~aG~d~i~-vGds~~~~~lG~pDt~~vtl~em~~~~~~V~r~~~~p~viaD~~fg~y~~~~~~av~~a~r~~~~ 102 (254)
T cd06557 24 TAKLADEAGVDVIL-VGDSLGMVVLGYDSTLPVTLDEMIYHTRAVRRGAPRALVVADMPFGSYQTSPEQALRNAARLMKE 102 (254)
T ss_pred HHHHHHHcCCCEEE-ECHHHHHHHcCCCCCCCcCHHHHHHHHHHHHhcCCCCeEEEeCCCCcccCCHHHHHHHHHHHHHH
Confidence 35556677888774 44 10 111455554334444444443322222222344443344444333 33456652
Q ss_pred hcCCC---CCHHHHHHHHHHHHHhCCCcceEe--------eceEE----ecCCCHH---HHHHHHHHHHHcCCcEEee
Q 019890 237 VRDHR---ANFKQSLDVLMMAKDYVPAGTLTK--------TSIML----GCGETPD---QVVSTMEKVRAAGVDVMTF 296 (334)
Q Consensus 237 Vr~r~---~tye~sL~vL~~ak~~~p~Gl~tk--------TgiMV----GlGETdE---E~~etl~~Lre~gvd~vti 296 (334)
.---. .+-++..+.++.+.+. |+.+. |.... ..|-|++ +.++-.+.+.++|+|.+.+
T Consensus 103 aGa~aVkiEd~~~~~~~I~al~~a---gipV~gHiGL~pq~~~~~gg~~~~grt~~~a~~~i~ra~a~~~AGA~~i~l 177 (254)
T cd06557 103 AGADAVKLEGGAEVAETIRALVDA---GIPVMGHIGLTPQSVNQLGGYKVQGKTEEEAERLLEDALALEEAGAFALVL 177 (254)
T ss_pred hCCeEEEEcCcHHHHHHHHHHHHc---CCCeeccccccceeeeccCCceeccCCHHHHHHHHHHHHHHHHCCCCEEEE
Confidence 11000 1123556667766664 44333 22223 2377875 5556666677889998776
No 322
>PRK09240 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=50.87 E-value=31 Score=34.45 Aligned_cols=47 Identities=15% Similarity=0.197 Sum_probs=35.4
Q ss_pred CCHHHHHHHHHHHHHhCCCcceEeeceEEecCCCHHHHHHHHHHHHHcCCcEEeecc
Q 019890 242 ANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQ 298 (334)
Q Consensus 242 ~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGlGETdEE~~etl~~Lre~gvd~vtigq 298 (334)
...++.+++++.+++.+|. +.++.+. -|.++ ++.|+++|++.+++++
T Consensus 135 ~~~e~l~~~i~~Ik~~~p~-i~i~~g~-----lt~e~----l~~Lk~aGv~r~~i~l 181 (371)
T PRK09240 135 VGVDYIRRALPIAREYFSS-VSIEVQP-----LSEEE----YAELVELGLDGVTVYQ 181 (371)
T ss_pred CCHHHHHHHHHHHHHhCCC-ceeccCC-----CCHHH----HHHHHHcCCCEEEEEE
Confidence 4677888888888887776 6665542 25555 4899999999999885
No 323
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=50.18 E-value=65 Score=31.35 Aligned_cols=77 Identities=17% Similarity=0.299 Sum_probs=49.9
Q ss_pred CHHHHHHHHHHHHHhCCCcceEeeceEEecCCCHHHHHHHHHHHHHcCCcEEeeccCcCCCCCCCcccccCCHHHHHHHH
Q 019890 243 NFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMPVSEYITPEAFERYR 322 (334)
Q Consensus 243 tye~sL~vL~~ak~~~p~Gl~tkTgiMVGlGETdEE~~etl~~Lre~gvd~vtigqYlrP~~~h~~v~~yv~P~~f~~~~ 322 (334)
+.+.-.++|+.+++..+ +.++.-+=+|+.++.+++.+.++.|.+.|++.++|-.= .+..+|-.|...+.++
T Consensus 106 ~p~~~~~iv~~~~~~~~--~pvsvKiR~g~~~~~~~~~~~~~~l~~~G~~~i~vH~R-------t~~q~~~~~a~w~~i~ 176 (309)
T PF01207_consen 106 DPDLLAEIVKAVRKAVP--IPVSVKIRLGWDDSPEETIEFARILEDAGVSAITVHGR-------TRKQRYKGPADWEAIA 176 (309)
T ss_dssp -HHHHHHHHHHHHHH-S--SEEEEEEESECT--CHHHHHHHHHHHHTT--EEEEECS--------TTCCCTS---HHHHH
T ss_pred ChHHhhHHHHhhhcccc--cceEEecccccccchhHHHHHHHHhhhcccceEEEecC-------chhhcCCcccchHHHH
Confidence 45666788888887654 56778888899889999999999999999999999621 4455565565566666
Q ss_pred HHHHHh
Q 019890 323 ALGMEM 328 (334)
Q Consensus 323 ~~a~~~ 328 (334)
++...+
T Consensus 177 ~i~~~~ 182 (309)
T PF01207_consen 177 EIKEAL 182 (309)
T ss_dssp HCHHC-
T ss_pred HHhhcc
Confidence 555443
No 324
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=49.99 E-value=1.4e+02 Score=29.06 Aligned_cols=51 Identities=18% Similarity=0.218 Sum_probs=36.0
Q ss_pred HHHHHHHHHHhCCCcceE--eeceEE--ecCCCHHHHHHHHHHHHHcCCcEEeec
Q 019890 247 SLDVLMMAKDYVPAGTLT--KTSIML--GCGETPDQVVSTMEKVRAAGVDVMTFG 297 (334)
Q Consensus 247 sL~vL~~ak~~~p~Gl~t--kTgiMV--GlGETdEE~~etl~~Lre~gvd~vtig 297 (334)
-+++++.+|+..+.++.+ +-+..- --|.+.+|..+.++.|.+.|+|.+++.
T Consensus 207 ~~eiv~aIR~~vG~d~~v~vri~~~~~~~~g~~~~e~~~ia~~Le~~gvd~iev~ 261 (336)
T cd02932 207 LLEVVDAVRAVWPEDKPLFVRISATDWVEGGWDLEDSVELAKALKELGVDLIDVS 261 (336)
T ss_pred HHHHHHHHHHHcCCCceEEEEEcccccCCCCCCHHHHHHHHHHHHHcCCCEEEEC
Confidence 367888888876533433 322211 126789999999999999999999974
No 325
>KOG4039 consensus Serine/threonine kinase TIP30/CC3 [Signal transduction mechanisms]
Probab=49.64 E-value=17 Score=33.83 Aligned_cols=43 Identities=26% Similarity=0.288 Sum_probs=35.6
Q ss_pred CCCCCcccCCCCCC------CCCCchhHHHHHHHHHHCCCcEEEEeeec
Q 019890 141 RGCRFCNVKTSRAP------PPPDPDEPTNVAEAIASWGLDYVVITSVD 183 (334)
Q Consensus 141 r~C~FC~V~~~r~p------~~ld~~Ep~~~A~av~~~GlkeVVLTSv~ 183 (334)
.+-.||+..+.|+. ..+|-|=+...|+++++.|.+++||.|-.
T Consensus 84 ~dV~FcaLgTTRgkaGadgfykvDhDyvl~~A~~AKe~Gck~fvLvSS~ 132 (238)
T KOG4039|consen 84 PDVLFCALGTTRGKAGADGFYKVDHDYVLQLAQAAKEKGCKTFVLVSSA 132 (238)
T ss_pred CceEEEeecccccccccCceEeechHHHHHHHHHHHhCCCeEEEEEecc
Confidence 55679999988853 24788999999999999999999998754
No 326
>KOG2670 consensus Enolase [Carbohydrate transport and metabolism]
Probab=49.18 E-value=91 Score=31.53 Aligned_cols=132 Identities=21% Similarity=0.293 Sum_probs=78.2
Q ss_pred CCcccCCCCC--CCCCCchhHHHHH-HHHHHCCCcEEEEeeecC----------CCC--CC--------chHHHHHHHHH
Q 019890 144 RFCNVKTSRA--PPPPDPDEPTNVA-EAIASWGLDYVVITSVDR----------DDL--AD--------QGSGHFAQTVR 200 (334)
Q Consensus 144 ~FC~V~~~r~--p~~ld~~Ep~~~A-~av~~~GlkeVVLTSv~r----------dDl--~d--------~Ga~~fa~lIr 200 (334)
..|+|---.+ |.-.+.+|-++.. +++.+.|+.-=+..|.|. -|| .. .-.+.++++-+
T Consensus 204 ~a~nVGDEGGfAPnI~~~~E~L~Li~~Ai~kagyt~kikIgmDvAaseF~~dgkYDLdfk~~~~d~s~~~s~~~L~dlY~ 283 (433)
T KOG2670|consen 204 DATNVGDEGGFAPNIQTNEEALDLIKEAINKAGYTGKVKIGMDVAASEFYKDGKYDLDFKSPNSDPSRWLSGDQLADLYK 283 (433)
T ss_pred cccccccccCcCCCccchHHHHHHHHHHHHhcCCCCceEEEEeechhhhhcCCcccccCcCCCCCcccccCHHHHHHHHH
Confidence 3455553222 4345556655544 588889997444445441 122 11 12467899999
Q ss_pred HHHhhCCCCceeee------------eccccccccc-----cchhhH---------HHHHHhhcCCCCCHHHHHHHHHHH
Q 019890 201 KLKELKPNMLIEAL------------VAKSGLNVFA-----HNIETV---------EELQSAVRDHRANFKQSLDVLMMA 254 (334)
Q Consensus 201 ~Ik~~~P~i~vE~L------------l~~ag~dv~~-----HnlETv---------~~l~~~Vr~r~~tye~sL~vL~~a 254 (334)
.+-+.+|-+++|=- ....++.+.. -|...+ ..|+-+|+ .-.+..++++..+.+
T Consensus 284 ~~~k~yPivSiEDPFdqdDw~~w~~~~~~~~iqiVgDDLtvTnpkri~~Ai~~k~cN~LLlKvN-QIGtvtEsiea~~~a 362 (433)
T KOG2670|consen 284 SFIKDYPIVSIEDPFDQDDWEAWSKFFKEVGIQIVGDDLTVTNPKRIATAIEEKACNALLLKVN-QIGTVTESIEAAKLA 362 (433)
T ss_pred HHHhcCCeeeecCCcchhhHHHHHHHhhccceEEecCcccccCHHHHHHHHHHhhccceEeecc-ccccHHHHHHHHHHH
Confidence 88888898777632 1222332222 232111 12333334 356889999999999
Q ss_pred HHhCCCcceEeeceEEec--CCCHHHHHHHH
Q 019890 255 KDYVPAGTLTKTSIMLGC--GETPDQVVSTM 283 (334)
Q Consensus 255 k~~~p~Gl~tkTgiMVGl--GETdEE~~etl 283 (334)
++. | =++||-+ |||++.|+..|
T Consensus 363 ~~~---g----wgvmvSHRSGETeDtFIaDL 386 (433)
T KOG2670|consen 363 RSA---G----WGVMVSHRSGETEDTFIADL 386 (433)
T ss_pred Hhc---C----ceEEEeccCCCcccchHHHh
Confidence 874 4 4789999 99999998765
No 327
>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....
Probab=49.06 E-value=1.9e+02 Score=25.52 Aligned_cols=135 Identities=16% Similarity=0.222 Sum_probs=63.8
Q ss_pred CchhHHHHHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhCCCCceeeeeccccccccccchhhHHHHHH-h
Q 019890 158 DPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVAKSGLNVFAHNIETVEELQS-A 236 (334)
Q Consensus 158 d~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~P~i~vE~Ll~~ag~dv~~HnlETv~~l~~-~ 236 (334)
..++..+.++++.+.|+..|.|=- ++.....+.++++.|.+....-.+.++ ++...+.+.++-- -
T Consensus 10 ~~~~~~~~l~~~~~~gv~~v~lR~------k~~~~~~~~~~a~~l~~~~~~~~~~li--------in~~~~la~~~~~dG 75 (180)
T PF02581_consen 10 CGDDFLEQLEAALAAGVDLVQLRE------KDLSDEELLELARRLAELCQKYGVPLI--------INDRVDLALELGADG 75 (180)
T ss_dssp STCHHHHHHHHHHHTT-SEEEEE-------SSS-HHHHHHHHHHHHHHHHHTTGCEE--------EES-HHHHHHCT-SE
T ss_pred hcchHHHHHHHHHHCCCcEEEEcC------CCCCccHHHHHHHHHHHHhhcceEEEE--------ecCCHHHHHhcCCCE
Confidence 356667777788888999888832 333445666666666654211122222 1112222211110 0
Q ss_pred hcCCCCCHHHHHHHHHHHHHhCCCcceEeeceEEec-CCCHHHHHHHHHHHHHcCCcEEeeccCcCCCCCCCcccccCCH
Q 019890 237 VRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC-GETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMPVSEYITP 315 (334)
Q Consensus 237 Vr~r~~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGl-GETdEE~~etl~~Lre~gvd~vtigqYlrP~~~h~~v~~yv~P 315 (334)
|+=...+ +. ...+++. ...+.++|. --+.+| +..+.+.|+|++++++.. ||..|--. .-.-.
T Consensus 76 vHl~~~~----~~-~~~~r~~------~~~~~~ig~S~h~~~e----~~~a~~~g~dYv~~gpvf-~T~sk~~~-~~~g~ 138 (180)
T PF02581_consen 76 VHLGQSD----LP-PAEARKL------LGPDKIIGASCHSLEE----AREAEELGADYVFLGPVF-PTSSKPGA-PPLGL 138 (180)
T ss_dssp EEEBTTS----SS-HHHHHHH------HTTTSEEEEEESSHHH----HHHHHHCTTSEEEEETSS---SSSSS--TTCHH
T ss_pred EEecccc----cc-hHHhhhh------cccceEEEeecCcHHH----HHHhhhcCCCEEEECCcc-CCCCCccc-cccCH
Confidence 1100000 11 1122221 123456888 788887 445569999999999764 33332222 33344
Q ss_pred HHHHHHHH
Q 019890 316 EAFERYRA 323 (334)
Q Consensus 316 ~~f~~~~~ 323 (334)
+.|..|.+
T Consensus 139 ~~l~~~~~ 146 (180)
T PF02581_consen 139 DGLREIAR 146 (180)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44555443
No 328
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=48.88 E-value=47 Score=33.76 Aligned_cols=63 Identities=13% Similarity=0.091 Sum_probs=41.1
Q ss_pred CCCCHHHHHHHHHHHHHhCCCcceEeeceEEe----c---CC-CHH----HHHHHHHHHHHcCCcEEeeccCcCCC
Q 019890 240 HRANFKQSLDVLMMAKDYVPAGTLTKTSIMLG----C---GE-TPD----QVVSTMEKVRAAGVDVMTFGQYMRPS 303 (334)
Q Consensus 240 r~~tye~sL~vL~~ak~~~p~Gl~tkTgiMVG----l---GE-TdE----E~~etl~~Lre~gvd~vtigqYlrP~ 303 (334)
+..+.+...+.++.+.+..|+.+.+-. +++- | .+ .++ -+....+.|.+.|+....+..|.+|.
T Consensus 203 P~qt~e~~~~~l~~~~~l~~~~is~y~-L~~~~~T~l~~~~~~~~~~~~~m~~~~~~~L~~~Gy~~yei~~far~~ 277 (430)
T PRK08208 203 PGQTHASWMESLDQALVYRPEELFLYP-LYVRPLTGLGRRARAWDDQRLSLYRLARDLLLEAGYTQTSMRMFRRND 277 (430)
T ss_pred CCCCHHHHHHHHHHHHhCCCCEEEEcc-ccccCCCccchhcCCCHHHHHHHHHHHHHHHHHcCCeEEeecceecCC
Confidence 567888888888888887666333222 2211 1 11 122 34456677899999999999999875
No 329
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=48.74 E-value=67 Score=31.46 Aligned_cols=57 Identities=19% Similarity=0.353 Sum_probs=44.6
Q ss_pred CCCHHHHHHHHHHHHHhCCCcceEeeceEEec-CCCHHHHHHHHHHHHHcCCcEEeeccCcCCC
Q 019890 241 RANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC-GETPDQVVSTMEKVRAAGVDVMTFGQYMRPS 303 (334)
Q Consensus 241 ~~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGl-GETdEE~~etl~~Lre~gvd~vtigqYlrP~ 303 (334)
....+.+++.++.+++.. ..-+|+.+ |.+.+|+.+..+.+++.|+|.+.++-...|.
T Consensus 83 n~g~d~~~~~i~~~~~~~------~~pvi~sI~g~~~~e~~~~a~~~~~agad~ielN~scpp~ 140 (334)
T PRK07565 83 YVGPEEYLELIRRAKEAV------DIPVIASLNGSSAGGWVDYARQIEQAGADALELNIYYLPT 140 (334)
T ss_pred CcCHHHHHHHHHHHHHhc------CCcEEEEeccCCHHHHHHHHHHHHHcCCCEEEEeCCCCCC
Confidence 456788888888887632 23567777 8999999999999999999999997544343
No 330
>PRK11320 prpB 2-methylisocitrate lyase; Provisional
Probab=48.57 E-value=1.4e+02 Score=29.22 Aligned_cols=83 Identities=14% Similarity=0.120 Sum_probs=64.4
Q ss_pred CCCHHHHHHHHHHHHHhCCCcceEeeceEEecCCCHHHHHHHHHHHHHcCCcEEeeccCcCCC-CCCCcccccCCHHHHH
Q 019890 241 RANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRPS-KRHMPVSEYITPEAFE 319 (334)
Q Consensus 241 ~~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGlGETdEE~~etl~~Lre~gvd~vtigqYlrP~-~~h~~v~~yv~P~~f~ 319 (334)
..++++.++.++++.+..+ +.+-.|+=-||| ..+.+..+.+.+.++|+.-++|=--.-|. ..|++-...+++++|.
T Consensus 60 ~l~~~e~~~~~~~I~~~~~--iPviaD~d~GyG-~~~~v~r~V~~~~~aGaagi~IEDq~~pK~cg~~~~~~lv~~ee~~ 136 (292)
T PRK11320 60 ITTLDDVLIDVRRITDACD--LPLLVDIDTGFG-GAFNIARTVKSMIKAGAAAVHIEDQVGAKRCGHRPNKEIVSQEEMV 136 (292)
T ss_pred CCCHHHHHHHHHHHHhccC--CCEEEECCCCCC-CHHHHHHHHHHHHHcCCeEEEEecCCCccccCCCCCCcccCHHHHH
Confidence 4678888888888887643 678889999999 89999999999999999999996544343 4577777788888766
Q ss_pred HHHHHHH
Q 019890 320 RYRALGM 326 (334)
Q Consensus 320 ~~~~~a~ 326 (334)
.==+.|.
T Consensus 137 ~kI~Aa~ 143 (292)
T PRK11320 137 DRIKAAV 143 (292)
T ss_pred HHHHHHH
Confidence 5433333
No 331
>PRK02506 dihydroorotate dehydrogenase 1A; Reviewed
Probab=48.36 E-value=1.5e+02 Score=28.93 Aligned_cols=56 Identities=16% Similarity=0.302 Sum_probs=40.3
Q ss_pred CCCHHHHHHHHHHHHHhCCCcceEeeceEEec-CCCHHHHHHHHHHHHHcC-CcEEeeccCcC
Q 019890 241 RANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC-GETPDQVVSTMEKVRAAG-VDVMTFGQYMR 301 (334)
Q Consensus 241 ~~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGl-GETdEE~~etl~~Lre~g-vd~vtigqYlr 301 (334)
....+.+++.++++++..++ .-+|+-+ |.+.+|+.+..+.+.+.+ .|.+-++-+..
T Consensus 73 n~g~~~~~~~i~~~~~~~~~-----~pvI~Si~G~~~~~~~~~a~~~~~~g~ad~iElN~ScP 130 (310)
T PRK02506 73 NLGFDYYLDYVLELQKKGPN-----KPHFLSVVGLSPEETHTILKKIQASDFNGLVELNLSCP 130 (310)
T ss_pred CcCHHHHHHHHHHHHhhcCC-----CCEEEEEEeCcHHHHHHHHHHHhhcCCCCEEEEECCCC
Confidence 34566677777766654222 3445555 899999999999999988 89999985553
No 332
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=48.22 E-value=2.6e+02 Score=26.89 Aligned_cols=137 Identities=12% Similarity=0.113 Sum_probs=82.8
Q ss_pred CCCCchhHHHHHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhCCCCceeeeeccccccccccchhhHHHHH
Q 019890 155 PPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVAKSGLNVFAHNIETVEELQ 234 (334)
Q Consensus 155 ~~ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~P~i~vE~Ll~~ag~dv~~HnlETv~~l~ 234 (334)
..+|.+...+.++.+.+.|++=+++.|-.. +......+.-.++++.+.+... ..+.|+.|-
T Consensus 16 g~iD~~~l~~lv~~~~~~Gv~gi~v~GstG-E~~~Ls~~Er~~l~~~~~~~~~----------g~~pvi~gv-------- 76 (294)
T TIGR02313 16 GDIDEEALRELIEFQIEGGSHAISVGGTSG-EPGSLTLEERKQAIENAIDQIA----------GRIPFAPGT-------- 76 (294)
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEECccCc-ccccCCHHHHHHHHHHHHHHhC----------CCCcEEEEC--------
Confidence 468999999999999999999888766542 1222222334455655544322 223344432
Q ss_pred HhhcCCCCCHHHHHHHHHHHHHhCCCcceEeeceEEecCCCHHHHHHHHHHHHHcCCcEEeeccCcCCCCCCCcccccCC
Q 019890 235 SAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMPVSEYIT 314 (334)
Q Consensus 235 ~~Vr~r~~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGlGETdEE~~etl~~Lre~gvd~vtigqYlrP~~~h~~v~~yv~ 314 (334)
-..+.++.++..+++.+.--+|+.+-.-. -+.=+++++.+.++.+.+. .+-++|.-|--|..... -++
T Consensus 77 -----~~~~t~~ai~~a~~A~~~Gad~v~v~pP~--y~~~~~~~l~~~f~~ia~a-~~~lpv~iYn~P~~tg~----~l~ 144 (294)
T TIGR02313 77 -----GALNHDETLELTKFAEEAGADAAMVIVPY--YNKPNQEALYDHFAEVADA-VPDFPIIIYNIPGRAAQ----EIA 144 (294)
T ss_pred -----CcchHHHHHHHHHHHHHcCCCEEEEcCcc--CCCCCHHHHHHHHHHHHHh-ccCCCEEEEeCchhcCc----CCC
Confidence 23567788888888888633333332222 2345789999999999876 22367777766654322 234
Q ss_pred HHHHHHHH
Q 019890 315 PEAFERYR 322 (334)
Q Consensus 315 P~~f~~~~ 322 (334)
|+.+.++.
T Consensus 145 ~~~l~~L~ 152 (294)
T TIGR02313 145 PKTMARLR 152 (294)
T ss_pred HHHHHHHH
Confidence 55555443
No 333
>PRK08508 biotin synthase; Provisional
Probab=48.14 E-value=41 Score=32.20 Aligned_cols=49 Identities=14% Similarity=0.207 Sum_probs=32.7
Q ss_pred CCHHHHHHHHHHHHHhCCCcceEeeceEEecCCCHHHHHHHHHHHHHcCCcEEeecc
Q 019890 242 ANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQ 298 (334)
Q Consensus 242 ~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGlGETdEE~~etl~~Lre~gvd~vtigq 298 (334)
..++..+++++.+|+..|+ +.+++. .|... .+.++.|+++|+|.++++.
T Consensus 72 ~~~e~~~ei~~~ik~~~p~-l~i~~s----~G~~~---~e~l~~Lk~aGld~~~~~l 120 (279)
T PRK08508 72 KKLEYVAEAAKAVKKEVPG-LHLIAC----NGTAS---VEQLKELKKAGIFSYNHNL 120 (279)
T ss_pred ccHHHHHHHHHHHHhhCCC-cEEEec----CCCCC---HHHHHHHHHcCCCEEcccc
Confidence 3567778888888877665 554332 23332 5567788888888888863
No 334
>COG1411 Uncharacterized protein related to proFAR isomerase (HisA) [General function prediction only]
Probab=47.91 E-value=27 Score=32.89 Aligned_cols=122 Identities=20% Similarity=0.323 Sum_probs=63.9
Q ss_pred CchhHHHHHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhCCCCceeeeeccccccccccchhhHHHHHHhh
Q 019890 158 DPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVAKSGLNVFAHNIETVEELQSAV 237 (334)
Q Consensus 158 d~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~P~i~vE~Ll~~ag~dv~~HnlETv~~l~~~V 237 (334)
.++.|.++|++++..|+++|-+---|. +-..| .=+++|++|..+.+ . +.+.|.. -+|+..++...-
T Consensus 34 ~s~dP~eia~~lr~rgar~vYiADLda--I~g~g--~n~d~i~~l~~~~~-~-----ivD~Gv~----dL~s~~~~l~~~ 99 (229)
T COG1411 34 LSDDPLEIAEALRERGARFVYIADLDA--ILGGG--DNADTIRELSSLEK-V-----IVDVGVR----DLESHAHRLIPA 99 (229)
T ss_pred CCCChHHHHHHHhhccCceEEeeehHH--HhcCC--CcHHHHHHHHhhhh-h-----eeecccc----cccCHHHhcCCC
Confidence 467899999999999999987744332 21222 22578888876544 2 4455554 344443332110
Q ss_pred cCCCCCHHHHHHHHHHHHHhCCCcceEeeceEEec--CCCHHHHHHHHHHHHHc---CCcEEeec
Q 019890 238 RDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC--GETPDQVVSTMEKVRAA---GVDVMTFG 297 (334)
Q Consensus 238 r~r~~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGl--GETdEE~~etl~~Lre~---gvd~vtig 297 (334)
- +--.-.+.++.++..++ .. +.++-++=-|. |-..|++.++.++|-.. ++-.+.|+
T Consensus 100 ~-~~vv~TEt~e~~e~~e~--~r-~vvslD~k~~~Ll~~~~ed~le~Vk~l~~~~~~~lIvLDi~ 160 (229)
T COG1411 100 E-TAVVGTETLEDTEEDEE--GR-IVVSLDVKGGELLGPWLEDFLETVKDLNYRRDPGLIVLDIG 160 (229)
T ss_pred c-ceeeccchhhhhhhhhc--cc-eEEEEecCCCeecCCCchhHHHHHHHHhccCCCCeEEEEcc
Confidence 0 01111223344443333 11 33333333333 44488888888886544 33344444
No 335
>PF09587 PGA_cap: Bacterial capsule synthesis protein PGA_cap; InterPro: IPR019079 CapA is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein [].
Probab=47.63 E-value=1.8e+02 Score=26.94 Aligned_cols=40 Identities=20% Similarity=0.398 Sum_probs=30.4
Q ss_pred HHHHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhh
Q 019890 163 TNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKEL 205 (334)
Q Consensus 163 ~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~ 205 (334)
.+.+++++.+|++.+.|-. |. .-|+|.+.|.++++.|++.
T Consensus 65 ~~~~~~L~~~G~d~vslAN-NH--~~D~G~~gl~~Tl~~L~~~ 104 (250)
T PF09587_consen 65 PEILDALKDAGFDVVSLAN-NH--IFDYGEEGLLDTLEALDKA 104 (250)
T ss_pred HHHHHHHHHcCCCEEEecC-CC--CccccHHHHHHHHHHHHHC
Confidence 4447888999999776633 43 3577889999999999864
No 336
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=47.46 E-value=2.6e+02 Score=26.78 Aligned_cols=137 Identities=9% Similarity=0.011 Sum_probs=81.0
Q ss_pred CCCCchhHHHHHHHHHHCC-CcEEEEeeecCCCCCCchHHHHHHHHHHHHhhCCCCceeeeeccccccccccchhhHHHH
Q 019890 155 PPPDPDEPTNVAEAIASWG-LDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVAKSGLNVFAHNIETVEEL 233 (334)
Q Consensus 155 ~~ld~~Ep~~~A~av~~~G-lkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~P~i~vE~Ll~~ag~dv~~HnlETv~~l 233 (334)
..+|.+...+.++.+.+.| ++-|++-|.... ......+.-.++++...+...+ .+.++.+-
T Consensus 16 g~iD~~~~~~~i~~~i~~G~v~gi~~~GstGE-~~~Lt~eEr~~~~~~~~~~~~~----------~~pvi~gv------- 77 (290)
T TIGR00683 16 GTINEKGLRQIIRHNIDKMKVDGLYVGGSTGE-NFMLSTEEKKEIFRIAKDEAKD----------QIALIAQV------- 77 (290)
T ss_pred CCcCHHHHHHHHHHHHhCCCcCEEEECCcccc-cccCCHHHHHHHHHHHHHHhCC----------CCcEEEec-------
Confidence 4689999999999999999 998887665421 1111223334555555443211 12233322
Q ss_pred HHhhcCCCCCHHHHHHHHHHHHHhCCCcceEeeceEEecCCCHHHHHHHHHHHHHcCCcEEeeccCcCCCCCCCcccccC
Q 019890 234 QSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMPVSEYI 313 (334)
Q Consensus 234 ~~~Vr~r~~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGlGETdEE~~etl~~Lre~gvd~vtigqYlrP~~~h~~v~~yv 313 (334)
-..+.++.++..+.+++.--+|+.+-.-. -+.=|++++.+.++.+.+. .+.+++.-|-.|...+.. +
T Consensus 78 ------~~~~t~~~i~la~~a~~~Gad~v~v~~P~--y~~~~~~~i~~yf~~v~~~-~~~lpv~lYn~P~~tg~~----l 144 (290)
T TIGR00683 78 ------GSVNLKEAVELGKYATELGYDCLSAVTPF--YYKFSFPEIKHYYDTIIAE-TGGLNMIVYSIPFLTGVN----M 144 (290)
T ss_pred ------CCCCHHHHHHHHHHHHHhCCCEEEEeCCc--CCCCCHHHHHHHHHHHHhh-CCCCCEEEEeCccccccC----c
Confidence 13567788888889888744433332222 1245789999999999664 323666677777543332 3
Q ss_pred CHHHHHHHH
Q 019890 314 TPEAFERYR 322 (334)
Q Consensus 314 ~P~~f~~~~ 322 (334)
+|+.+.++.
T Consensus 145 ~~~~i~~L~ 153 (290)
T TIGR00683 145 GIEQFGELY 153 (290)
T ss_pred CHHHHHHHh
Confidence 455555443
No 337
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=47.28 E-value=1.9e+02 Score=27.42 Aligned_cols=123 Identities=15% Similarity=0.146 Sum_probs=65.8
Q ss_pred HHHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhCCCCceeee---------ecccccc-ccccchhhHH--
Q 019890 164 NVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEAL---------VAKSGLN-VFAHNIETVE-- 231 (334)
Q Consensus 164 ~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~P~i~vE~L---------l~~ag~d-v~~HnlETv~-- 231 (334)
.++|.+...|+++|+|=..+. ..+.+.+..+++++...--...|.+- +.|+|.+ ++--+++|++
T Consensus 24 ~~~e~~a~~G~D~v~iD~EHg----~~~~~~~~~~~~a~~~~g~~~~VRvp~~~~~~i~r~LD~Ga~gIivP~v~taeea 99 (249)
T TIGR03239 24 ITTEVLGLAGFDWLLLDGEHA----PNDVLTFIPQLMALKGSASAPVVRPPWNEPVIIKRLLDIGFYNFLIPFVESAEEA 99 (249)
T ss_pred HHHHHHHhcCCCEEEEecccC----CCCHHHHHHHHHHHhhcCCCcEEECCCCCHHHHHHHhcCCCCEEEecCcCCHHHH
Confidence 456666789999999955442 23345677778777643111122221 6677776 3333445544
Q ss_pred -HHHHhhc-C----C-------CCCHHHHHHHHHHHHHhCCCcceEeeceEEecCCCHHHHHHHHHHHHHcCCcEEeecc
Q 019890 232 -ELQSAVR-D----H-------RANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQ 298 (334)
Q Consensus 232 -~l~~~Vr-~----r-------~~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGlGETdEE~~etl~~Lre~gvd~vtigq 298 (334)
++-...+ + | ...|...- +.++..+.+ +. ++-+=||.+=+.+.=+.+.--|+|.+.||+
T Consensus 100 ~~~v~a~kypP~G~Rg~~~~~r~~~y~~~~---~y~~~~n~~---~~---vi~~IEt~~av~n~~eI~av~gvd~l~iG~ 170 (249)
T TIGR03239 100 ERAVAATRYPPEGIRGVSVSHRSNRYGTVP---DYFATINDN---IT---VLVQIESQKGVDNVDEIAAVDGVDGIFVGP 170 (249)
T ss_pred HHHHHHcCCCCCCcCCCCcchhhhccCChH---HHHHHhccc---cE---EEEEECCHHHHHhHHHHhCCCCCCEEEECh
Confidence 3332222 1 1 12232211 233332212 22 222359999877766666555799999997
Q ss_pred C
Q 019890 299 Y 299 (334)
Q Consensus 299 Y 299 (334)
+
T Consensus 171 ~ 171 (249)
T TIGR03239 171 S 171 (249)
T ss_pred H
Confidence 6
No 338
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=47.13 E-value=2.7e+02 Score=26.83 Aligned_cols=132 Identities=15% Similarity=0.157 Sum_probs=81.0
Q ss_pred CCCCchhHHHHHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhCCCCceeeeeccccccccccchhhHHHHH
Q 019890 155 PPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVAKSGLNVFAHNIETVEELQ 234 (334)
Q Consensus 155 ~~ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~P~i~vE~Ll~~ag~dv~~HnlETv~~l~ 234 (334)
..+|.+...+.++.+.+.|++-+++-|... .......+...++++.+.+...+ .+.++.+-
T Consensus 23 g~iD~~~l~~li~~l~~~Gv~Gi~~~GstG-E~~~Lt~eEr~~~~~~~~~~~~~----------~~pvi~gv-------- 83 (303)
T PRK03620 23 GSFDEAAYREHLEWLAPYGAAALFAAGGTG-EFFSLTPDEYSQVVRAAVETTAG----------RVPVIAGA-------- 83 (303)
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEECcCCc-CcccCCHHHHHHHHHHHHHHhCC----------CCcEEEec--------
Confidence 468999999999999999999998866542 12222234445666655554221 12233322
Q ss_pred HhhcCCCCCHHHHHHHHHHHHHhCCCcceEeeceEEecCCCHHHHHHHHHHHHHcCCcEEeeccCcCCCCCCCcccccCC
Q 019890 235 SAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMPVSEYIT 314 (334)
Q Consensus 235 ~~Vr~r~~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGlGETdEE~~etl~~Lre~gvd~vtigqYlrP~~~h~~v~~yv~ 314 (334)
..+.++.++..+.+++.-.+++.+-.-... .-+++++.+.++.+.+.- -++|.-|-+|. --++
T Consensus 84 ------~~~t~~~i~~~~~a~~~Gadav~~~pP~y~--~~~~~~i~~~f~~va~~~--~lpi~lYn~~g-------~~l~ 146 (303)
T PRK03620 84 ------GGGTAQAIEYAQAAERAGADGILLLPPYLT--EAPQEGLAAHVEAVCKST--DLGVIVYNRDN-------AVLT 146 (303)
T ss_pred ------CCCHHHHHHHHHHHHHhCCCEEEECCCCCC--CCCHHHHHHHHHHHHHhC--CCCEEEEcCCC-------CCCC
Confidence 125677788888888874444444333322 347899999999998852 25565565553 1356
Q ss_pred HHHHHHHH
Q 019890 315 PEAFERYR 322 (334)
Q Consensus 315 P~~f~~~~ 322 (334)
|+.+.++.
T Consensus 147 ~~~l~~L~ 154 (303)
T PRK03620 147 ADTLARLA 154 (303)
T ss_pred HHHHHHHH
Confidence 66555554
No 339
>PRK03739 2-isopropylmalate synthase; Validated
Probab=46.49 E-value=3e+02 Score=29.35 Aligned_cols=146 Identities=14% Similarity=0.141 Sum_probs=78.8
Q ss_pred CCCCchhHHHHHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhC---CCCceeee--------------ecc
Q 019890 155 PPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELK---PNMLIEAL--------------VAK 217 (334)
Q Consensus 155 ~~ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~---P~i~vE~L--------------l~~ 217 (334)
.+++.+|=.++|+.+.++|+++|-+.- |-.+... .+.++.|.+.. ++..+-.+ +..
T Consensus 47 v~~s~~~Ki~ia~~L~~~GV~~IE~Gf------P~~s~~e-~e~v~~i~~~~~~~~~~~i~~l~r~~~~di~~a~~a~~~ 119 (552)
T PRK03739 47 EPMSPERKLRMFDLLVKIGFKEIEVGF------PSASQTD-FDFVRELIEEGLIPDDVTIQVLTQAREHLIERTFEALEG 119 (552)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEEC------CCcChHH-HHHHHHHHHhcCCCCCCEEEEEeccchhHHHHHHHHhcC
Confidence 368899999999999999999987752 3222222 25666664431 34444444 112
Q ss_pred ccccccccchhhHHHHH-HhhcCCCCCHHHHH----HHHHHHHHhCCCcceEeeceEEec-CC----CH-HHHHHHHHHH
Q 019890 218 SGLNVFAHNIETVEELQ-SAVRDHRANFKQSL----DVLMMAKDYVPAGTLTKTSIMLGC-GE----TP-DQVVSTMEKV 286 (334)
Q Consensus 218 ag~dv~~HnlETv~~l~-~~Vr~r~~tye~sL----~vL~~ak~~~p~Gl~tkTgiMVGl-GE----Td-EE~~etl~~L 286 (334)
++...++..+-+++... ..++ .+.++.+ +.++.+|+.... ...+++.+=| +| ++ +-+.+.++.+
T Consensus 120 ~~~~~v~i~~~~Sd~h~~~~l~---~t~ee~l~~~~~~v~~a~~~~~~--~~~~~~~v~f~~EDasR~d~~~l~~~~~~a 194 (552)
T PRK03739 120 AKRAIVHLYNSTSPLQRRVVFG---KDRDGIKAIAVDGARLVKELAAK--YPETEWRFEYSPESFTGTELDFALEVCDAV 194 (552)
T ss_pred CCCCEEEEEEcCCHHHHHHHhC---CCHHHHHHHHHHHHHHHHHhccc--ccCceeEEEEecccCCCCCHHHHHHHHHHH
Confidence 22223444444444333 3333 4556655 455556654211 2345577888 88 66 4456666766
Q ss_pred HH---cCCcEEeeccCcCCCCCCCcccccCCHHHHH
Q 019890 287 RA---AGVDVMTFGQYMRPSKRHMPVSEYITPEAFE 319 (334)
Q Consensus 287 re---~gvd~vtigqYlrP~~~h~~v~~yv~P~~f~ 319 (334)
.+ .|.|...+.. +.-+ ..+.+|++|.
T Consensus 195 ~~~~~ag~~~~~~i~-l~DT------vG~~~P~~~~ 223 (552)
T PRK03739 195 IDVWQPTPERKVILN-LPAT------VEMSTPNVYA 223 (552)
T ss_pred HHhhcCCCCceeEEE-eccC------CcCcCHHHHH
Confidence 65 5665422211 1111 2577787754
No 340
>PRK13660 hypothetical protein; Provisional
Probab=46.41 E-value=53 Score=30.02 Aligned_cols=45 Identities=29% Similarity=0.384 Sum_probs=31.0
Q ss_pred HHHHHHHHHCCCcEEEEeeecCCCCCCchHHHH-HHHHHHHHhhCCCCceeee
Q 019890 163 TNVAEAIASWGLDYVVITSVDRDDLADQGSGHF-AQTVRKLKELKPNMLIEAL 214 (334)
Q Consensus 163 ~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~f-a~lIr~Ik~~~P~i~vE~L 214 (334)
.+....+.+.|+..+ |||+.. |.+.+ ++++-++|+..|++.+.++
T Consensus 32 ~~~l~~~~e~G~~wf-i~ggal------G~d~wAaEvvl~LK~~yp~lkL~~~ 77 (182)
T PRK13660 32 KRKLIALLEEGLEWV-IISGQL------GVELWAAEVVLELKEEYPDLKLAVI 77 (182)
T ss_pred HHHHHHHHHCCCCEE-EECCcc------hHHHHHHHHHHHHHhhCCCeEEEEE
Confidence 344445556798865 455442 55554 6899999999999888776
No 341
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=46.31 E-value=46 Score=33.54 Aligned_cols=51 Identities=24% Similarity=0.310 Sum_probs=38.2
Q ss_pred HHHHHHHHHhCCCcc----eEee-ceEEecCCCHHHHHHHHHHHHHcC-CcEEeecc
Q 019890 248 LDVLMMAKDYVPAGT----LTKT-SIMLGCGETPDQVVSTMEKVRAAG-VDVMTFGQ 298 (334)
Q Consensus 248 L~vL~~ak~~~p~Gl----~tkT-giMVGlGETdEE~~etl~~Lre~g-vd~vtigq 298 (334)
+++++.+|+.++..+ .++. +.-.+.|.+.+|..+.++.|.+.| +|.+++--
T Consensus 203 ~EVv~aVr~~vg~~~~vg~Rls~~d~~~~~g~~~~e~~~la~~L~~~G~~d~i~vs~ 259 (363)
T COG1902 203 LEVVDAVREAVGADFPVGVRLSPDDFFDGGGLTIEEAVELAKALEEAGLVDYIHVSE 259 (363)
T ss_pred HHHHHHHHHHhCCCceEEEEECccccCCCCCCCHHHHHHHHHHHHhcCCccEEEeec
Confidence 588888888876532 2322 222445889999999999999999 79999863
No 342
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=45.99 E-value=2.4e+02 Score=26.77 Aligned_cols=95 Identities=13% Similarity=0.167 Sum_probs=59.0
Q ss_pred CCchhHHHHHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhCCC-Cceeee--------------ecccccc
Q 019890 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPN-MLIEAL--------------VAKSGLN 221 (334)
Q Consensus 157 ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~P~-i~vE~L--------------l~~ag~d 221 (334)
.+++.+.+.++.+.+.|.+.|.|- | -..-.-...+.+++++|++..+. +.+++= ..++|.+
T Consensus 135 ~~~~~~~~~~~~~~~~g~~~i~l~--D--T~G~~~P~~v~~lv~~l~~~~~~~~~i~~H~Hn~~Gla~AN~laA~~aGa~ 210 (266)
T cd07944 135 YSDEELLELLELVNEIKPDVFYIV--D--SFGSMYPEDIKRIISLLRSNLDKDIKLGFHAHNNLQLALANTLEAIELGVE 210 (266)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEEe--c--CCCCCCHHHHHHHHHHHHHhcCCCceEEEEeCCCccHHHHHHHHHHHcCCC
Confidence 578999999999999999998772 1 11122356789999999887653 555442 3455655
Q ss_pred ccc----------cc--hhhH-HHHHHhhcCCCCCHHHHHHHH-HHHHH
Q 019890 222 VFA----------HN--IETV-EELQSAVRDHRANFKQSLDVL-MMAKD 256 (334)
Q Consensus 222 v~~----------Hn--lETv-~~l~~~Vr~r~~tye~sL~vL-~~ak~ 256 (334)
++. -| +|.+ ..|... .+.+.+.+..+++. +.++.
T Consensus 211 ~vd~s~~G~G~~aGN~~~E~~v~~l~~~-~~~~~dl~~l~~~~~~~~~~ 258 (266)
T cd07944 211 IIDATVYGMGRGAGNLPTELLLDYLNNK-FGKKYNLEPVLELIDEYIAP 258 (266)
T ss_pred EEEEecccCCCCcCcHHHHHHHHHHHHh-hccCCCHHHHHHHHHHHHHH
Confidence 432 23 3433 333333 32567887777777 44444
No 343
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=45.62 E-value=57 Score=32.50 Aligned_cols=50 Identities=22% Similarity=0.365 Sum_probs=36.0
Q ss_pred CCHHHHHHHHHHHHHhCCCcceEeeceEEecCCCHHHHHHHHHHHHHcCCcEEeecc
Q 019890 242 ANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQ 298 (334)
Q Consensus 242 ~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGlGETdEE~~etl~~Lre~gvd~vtigq 298 (334)
.+|+.+++.|+.+++..+-=+.+| ++|+|-| .+..+.|.++|+|.+.++-
T Consensus 169 ~~f~~~le~i~~i~~~~~vPVivK---~~g~g~s----~~~a~~l~~~Gvd~I~Vsg 218 (352)
T PRK05437 169 RDFRGWLDNIAEIVSALPVPVIVK---EVGFGIS----KETAKRLADAGVKAIDVAG 218 (352)
T ss_pred ccHHHHHHHHHHHHHhhCCCEEEE---eCCCCCc----HHHHHHHHHcCCCEEEECC
Confidence 368888899999988632114555 3577877 4666778889999999964
No 344
>PRK08898 coproporphyrinogen III oxidase; Provisional
Probab=45.60 E-value=1.6e+02 Score=29.56 Aligned_cols=64 Identities=16% Similarity=0.173 Sum_probs=39.8
Q ss_pred CCCCHHHHHHHHHHHHHhCCCcceEeeceEEecC---------C-CH----HHHHHHHHHHHHcCCcEEeeccCcCCCC
Q 019890 240 HRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCG---------E-TP----DQVVSTMEKVRAAGVDVMTFGQYMRPSK 304 (334)
Q Consensus 240 r~~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGlG---------E-Td----EE~~etl~~Lre~gvd~vtigqYlrP~~ 304 (334)
++.+.+.+.+.++.+.+..|+.+ .-..+++-=| . .+ +.+....+.|.+.|+....+..|.+|..
T Consensus 183 Pgqt~~~~~~~l~~~~~l~p~~i-s~y~l~~~~gT~l~~~~~~~~~~~~~~~~~~~~~~~L~~~Gy~~ye~~~fa~~~~ 260 (394)
T PRK08898 183 PGQTLDEALADVETALAFGPPHL-SLYHLTLEPNTLFAKFPPALPDDDASADMQDWIEARLAAAGYAHYEVSAYAKPGR 260 (394)
T ss_pred CCCCHHHHHHHHHHHHhcCCCEE-EEeeeEECCCChhhhccCCCCChHHHHHHHHHHHHHHHHcCCchhccccccCCCc
Confidence 46677777777888888777632 2222322111 0 11 2233445778899999999999988864
No 345
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=45.39 E-value=1.8e+02 Score=27.24 Aligned_cols=119 Identities=13% Similarity=0.068 Sum_probs=64.5
Q ss_pred hhHHHHHHHHHH-CCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhCCCCceeee-----------eccccccccccch
Q 019890 160 DEPTNVAEAIAS-WGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEAL-----------VAKSGLNVFAHNI 227 (334)
Q Consensus 160 ~Ep~~~A~av~~-~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~P~i~vE~L-----------l~~ag~dv~~Hnl 227 (334)
..|.+.|+...+ .|++++.+ +|.|.... |.....++|++|.+. .++.+++= +.++|.+..--|-
T Consensus 31 ~dp~~~a~~~~~~~Ga~~l~i--vDLd~a~~-~~~~n~~~I~~i~~~-~~~pi~vGGGIrs~e~v~~~l~~Ga~kvvigt 106 (234)
T PRK13587 31 RSAEESIAYYSQFECVNRIHI--VDLIGAKA-QHAREFDYIKSLRRL-TTKDIEVGGGIRTKSQIMDYFAAGINYCIVGT 106 (234)
T ss_pred CCHHHHHHHHHhccCCCEEEE--EECccccc-CCcchHHHHHHHHhh-cCCeEEEcCCcCCHHHHHHHHHCCCCEEEECc
Confidence 467779998888 69999988 44332222 223345788888763 33433331 3334444333232
Q ss_pred hhHHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCcceEeeceEEe----cC---CCHHHHHHHHHHHHHcCCcEEeec
Q 019890 228 ETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLG----CG---ETPDQVVSTMEKVRAAGVDVMTFG 297 (334)
Q Consensus 228 ETv~~l~~~Vr~r~~tye~sL~vL~~ak~~~p~Gl~tkTgiMVG----lG---ETdEE~~etl~~Lre~gvd~vtig 297 (334)
+ .-+..++++.+.+.+|+-+.+.-+.-=| -| ++.-+..+.++.+.+.++..+=+.
T Consensus 107 ~---------------a~~~~~~l~~~~~~fg~~ivvslD~~~g~v~~~gw~~~~~~~~~~~~~~~~~~g~~~ii~t 168 (234)
T PRK13587 107 K---------------GIQDTDWLKEMAHTFPGRIYLSVDAYGEDIKVNGWEEDTELNLFSFVRQLSDIPLGGIIYT 168 (234)
T ss_pred h---------------HhcCHHHHHHHHHHcCCCEEEEEEeeCCEEEecCCcccCCCCHHHHHHHHHHcCCCEEEEe
Confidence 2 2223455666666655423333333211 12 355556777788888887755444
No 346
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=45.27 E-value=84 Score=30.11 Aligned_cols=49 Identities=16% Similarity=0.259 Sum_probs=37.2
Q ss_pred CCchhHHHHHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhCCCC
Q 019890 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNM 209 (334)
Q Consensus 157 ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~P~i 209 (334)
.+++...+.++.+.++|.+.|.|-=- ..-.....+.++|+.|++..|++
T Consensus 146 ~~~~~~~~~~~~~~~~Ga~~i~l~DT----~G~~~P~~v~~lv~~l~~~~~~~ 194 (274)
T cd07938 146 VPPERVAEVAERLLDLGCDEISLGDT----IGVATPAQVRRLLEAVLERFPDE 194 (274)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEECCC----CCccCHHHHHHHHHHHHHHCCCC
Confidence 57899999999999999999887211 11123567899999999887764
No 347
>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]
Probab=45.25 E-value=1.9e+02 Score=27.31 Aligned_cols=116 Identities=16% Similarity=0.221 Sum_probs=68.2
Q ss_pred HHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhCCCCceeee-----------eccccccccccchhhHHHH
Q 019890 165 VAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEAL-----------VAKSGLNVFAHNIETVEEL 233 (334)
Q Consensus 165 ~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~P~i~vE~L-----------l~~ag~dv~~HnlETv~~l 233 (334)
+++.+.+.|.+.+++.+... -.-+.++++.-++..-.+-++++ +.+.|+|.+..+.-.-...
T Consensus 72 e~~ma~~aGAd~~tV~g~A~-------~~TI~~~i~~A~~~~~~v~iDl~~~~~~~~~~~~l~~~gvd~~~~H~g~D~q~ 144 (217)
T COG0269 72 EARMAFEAGADWVTVLGAAD-------DATIKKAIKVAKEYGKEVQIDLIGVWDPEQRAKWLKELGVDQVILHRGRDAQA 144 (217)
T ss_pred HHHHHHHcCCCEEEEEecCC-------HHHHHHHHHHHHHcCCeEEEEeecCCCHHHHHHHHHHhCCCEEEEEecccHhh
Confidence 45566788999988888652 13467777777776544555655 5557888765441000000
Q ss_pred HHhhcCCCCCHHHHHHHHHHHHHhCCCcceE-eeceEEecCCCHHHHHHHHHHHHHcCCcEEeeccCcCCCC
Q 019890 234 QSAVRDHRANFKQSLDVLMMAKDYVPAGTLT-KTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRPSK 304 (334)
Q Consensus 234 ~~~Vr~r~~tye~sL~vL~~ak~~~p~Gl~t-kTgiMVGlGETdEE~~etl~~Lre~gvd~vtigqYlrP~~ 304 (334)
.+.++ +++.|..+|+....|+.+ =+| |=+ .+.+..+..++++.+=+|-++.-++
T Consensus 145 ------~G~~~--~~~~l~~ik~~~~~g~~vAVaG-----GI~----~~~i~~~~~~~~~ivIvGraIt~a~ 199 (217)
T COG0269 145 ------AGKSW--GEDDLEKIKKLSDLGAKVAVAG-----GIT----PEDIPLFKGIGADIVIVGRAITGAK 199 (217)
T ss_pred ------cCCCc--cHHHHHHHHHhhccCceEEEec-----CCC----HHHHHHHhcCCCCEEEECchhcCCC
Confidence 12233 245555555554434332 223 333 4566778899999999998875544
No 348
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=45.14 E-value=88 Score=29.59 Aligned_cols=68 Identities=19% Similarity=0.269 Sum_probs=44.5
Q ss_pred CCCchhHHHHHHHHHHCCCcEEEEeeecCCCCCCchH----HHHHHHHHHHHhhCCC-Cceeee----------eccccc
Q 019890 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGS----GHFAQTVRKLKELKPN-MLIEAL----------VAKSGL 220 (334)
Q Consensus 156 ~ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga----~~fa~lIr~Ik~~~P~-i~vE~L----------l~~ag~ 220 (334)
+.|..-..++.+++.+.|++.+-+ |.-|+-. ..-..+|++|++..+- +.|++. +.++|+
T Consensus 12 saD~~~l~~el~~~~~agad~iH~------DVMDghFVPNiTfGp~~v~~l~~~t~~p~DvHLMV~~p~~~i~~fa~aga 85 (220)
T COG0036 12 SADFARLGEELKALEAAGADLIHI------DVMDGHFVPNITFGPPVVKALRKITDLPLDVHLMVENPDRYIEAFAKAGA 85 (220)
T ss_pred hCCHhHHHHHHHHHHHcCCCEEEE------eccCCCcCCCcccCHHHHHHHhhcCCCceEEEEecCCHHHHHHHHHHhCC
Confidence 346778888899999999998876 2333210 1114677777764221 455554 788999
Q ss_pred cccccchhh
Q 019890 221 NVFAHNIET 229 (334)
Q Consensus 221 dv~~HnlET 229 (334)
|.+.-+.|.
T Consensus 86 d~It~H~E~ 94 (220)
T COG0036 86 DIITFHAEA 94 (220)
T ss_pred CEEEEEecc
Confidence 988877763
No 349
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=45.05 E-value=41 Score=34.44 Aligned_cols=58 Identities=21% Similarity=0.321 Sum_probs=41.8
Q ss_pred hHHHHHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhCCCCce---eee-------eccccccccc
Q 019890 161 EPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLI---EAL-------VAKSGLNVFA 224 (334)
Q Consensus 161 Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~P~i~v---E~L-------l~~ag~dv~~ 224 (334)
+-.+.++++.+.|++.|+|-+-+ +....+.++|+.|++..|++.+ .+. +.++|.|.+.
T Consensus 153 ~~~~~v~~lv~aGvDvI~iD~a~------g~~~~~~~~v~~ik~~~p~~~vi~g~V~T~e~a~~l~~aGaD~I~ 220 (404)
T PRK06843 153 DTIERVEELVKAHVDILVIDSAH------GHSTRIIELVKKIKTKYPNLDLIAGNIVTKEAALDLISVGADCLK 220 (404)
T ss_pred HHHHHHHHHHhcCCCEEEEECCC------CCChhHHHHHHHHHhhCCCCcEEEEecCCHHHHHHHHHcCCCEEE
Confidence 35678889999999999984433 2235688999999999887543 111 6677888754
No 350
>cd01301 rDP_like renal dipeptidase (rDP), best studied in mammals and also called membrane or microsomal dipeptidase, is a membrane-bound glycoprotein hydrolyzing dipeptides and is involved in hydrolytic metabolism of penem and carbapenem beta-lactam antibiotics. Although the biological function of the enzyme is still unknown, it has been suggested to play a role in the renal glutathione metabolism.
Probab=45.03 E-value=2.4e+02 Score=27.57 Aligned_cols=123 Identities=18% Similarity=0.280 Sum_probs=67.9
Q ss_pred HHHHHHHHHCCCcEEEEeeecCCCCC-------CchHHHH-HHHHHHHHhhCCCCceeee----------ecc-cccccc
Q 019890 163 TNVAEAIASWGLDYVVITSVDRDDLA-------DQGSGHF-AQTVRKLKELKPNMLIEAL----------VAK-SGLNVF 223 (334)
Q Consensus 163 ~~~A~av~~~GlkeVVLTSv~rdDl~-------d~Ga~~f-a~lIr~Ik~~~P~i~vE~L----------l~~-ag~dv~ 223 (334)
....+.+.++|++++-||=-....+. +.|-..| .++|+++.+. ++.|.+- +.- ..|=++
T Consensus 116 ~~~l~~~~~lGvR~i~Lt~n~~N~~a~g~~~~~~~GLt~~G~~vv~~mn~l--GmiiDvSH~s~~~~~dv~~~s~~Pvia 193 (309)
T cd01301 116 LALLRLLYRLGVRYLGLTWNGDNKFADGCGEKRGGGLTPFGKELVREMNRL--GIIIDLSHLSERTFWDVLDISNAPVIA 193 (309)
T ss_pred HHHHHHHHHcCCeEEEeeecCCCccccCCCCCCCCCCCHHHHHHHHHHHHc--CCEEEcCCCCHHHHHHHHHhcCCCEEE
Confidence 34566778999999999932221122 2332222 4677777653 4544442 111 234455
Q ss_pred ccchhhHHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCcceEeeceEEec-----CCCHHHHHHHHHHHHH-cCCcEEeec
Q 019890 224 AHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC-----GETPDQVVSTMEKVRA-AGVDVMTFG 297 (334)
Q Consensus 224 ~HnlETv~~l~~~Vr~r~~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGl-----GETdEE~~etl~~Lre-~gvd~vtig 297 (334)
.|- .+..+.+.-| .-+ -+.++.+.+. +| .+.-.+.-+| .-|-+++.++++.+.+ +|+|+|.||
T Consensus 194 SHs--n~ral~~h~R--Nlt----D~~i~~ia~~--GG-vigi~~~~~fl~~~~~~~~~~~~~hi~~i~~l~G~dhVgiG 262 (309)
T cd01301 194 SHS--NARALCDHPR--NLT----DAQLKAIAET--GG-VIGVNFYPAFLSPGADATLDDVVRHIDYIVDLIGIDHVGLG 262 (309)
T ss_pred ecc--ChHHhcCCCC--CCC----HHHHHHHHHc--CC-EEEEeeeHHHhCCCCCCCHHHHHHHHHHHHHhcCCCeEEEC
Confidence 553 1233433211 222 2444455443 34 3444444344 4688999999999888 599999999
Q ss_pred c
Q 019890 298 Q 298 (334)
Q Consensus 298 q 298 (334)
.
T Consensus 263 s 263 (309)
T cd01301 263 S 263 (309)
T ss_pred c
Confidence 6
No 351
>PF05378 Hydant_A_N: Hydantoinase/oxoprolinase N-terminal region; InterPro: IPR008040 This domain is found at the N terminus of the hydantoinase/oxoprolinase IPR002821 from INTERPRO family.
Probab=44.97 E-value=40 Score=30.20 Aligned_cols=34 Identities=18% Similarity=0.209 Sum_probs=29.4
Q ss_pred CCCCchhHHHHHHHHHHCCCcEEEEeeecCCCCC
Q 019890 155 PPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLA 188 (334)
Q Consensus 155 ~~ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~ 188 (334)
.++|.+++.+.++.+++.|++-|++.+.+....|
T Consensus 129 ~~ld~~~v~~~~~~l~~~gv~avAV~~~fS~~np 162 (176)
T PF05378_consen 129 EPLDEDEVREALRELKDKGVEAVAVSLLFSYRNP 162 (176)
T ss_pred cCCCHHHHHHHHHHHHhCCCCEEEEECccCCCCH
Confidence 4799999999999999999999999998854333
No 352
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=44.91 E-value=70 Score=30.22 Aligned_cols=49 Identities=31% Similarity=0.324 Sum_probs=37.3
Q ss_pred CCCchhHHHHHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhCCC
Q 019890 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPN 208 (334)
Q Consensus 156 ~ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~P~ 208 (334)
..+++...+.++.+.+.|.+.|.| .| ...-.....+.++|+.|++..|+
T Consensus 139 ~~~~~~~~~~~~~~~~~G~~~i~l--~D--T~G~~~P~~v~~lv~~l~~~~~~ 187 (268)
T cd07940 139 RTDLDFLIEVVEAAIEAGATTINI--PD--TVGYLTPEEFGELIKKLKENVPN 187 (268)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEE--CC--CCCCCCHHHHHHHHHHHHHhCCC
Confidence 367899999999999999999877 11 12222356789999999988775
No 353
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=44.88 E-value=2.9e+02 Score=26.48 Aligned_cols=132 Identities=14% Similarity=0.200 Sum_probs=76.7
Q ss_pred CCCCchhHHHHHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhCCCCceeeeeccccccccccchhhHHHHH
Q 019890 155 PPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVAKSGLNVFAHNIETVEELQ 234 (334)
Q Consensus 155 ~~ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~P~i~vE~Ll~~ag~dv~~HnlETv~~l~ 234 (334)
..+|.+...+.++.+.+.|++-+++.|-... ......+...++++...+...+ ...++.|-
T Consensus 21 g~iD~~~l~~li~~l~~~Gv~gi~v~GstGE-~~~Lt~eEr~~v~~~~~~~~~g----------~~pvi~gv-------- 81 (296)
T TIGR03249 21 GSFDEAAYRENIEWLLGYGLEALFAAGGTGE-FFSLTPAEYEQVVEIAVSTAKG----------KVPVYTGV-------- 81 (296)
T ss_pred CCcCHHHHHHHHHHHHhcCCCEEEECCCCcC-cccCCHHHHHHHHHHHHHHhCC----------CCcEEEec--------
Confidence 4689999999999999999999998775431 2222223344556555443221 12233322
Q ss_pred HhhcCCCCCHHHHHHHHHHHHHhCCCcceEeeceEEecCCCHHHHHHHHHHHHHcCCcEEeeccCcCCCCCCCcccccCC
Q 019890 235 SAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMPVSEYIT 314 (334)
Q Consensus 235 ~~Vr~r~~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGlGETdEE~~etl~~Lre~gvd~vtigqYlrP~~~h~~v~~yv~ 314 (334)
..+.++.++..+.+++.--+++.+-.-... .-+++++.+.++.+.+. ++ +++.-|-+++ --++
T Consensus 82 ------~~~t~~ai~~a~~a~~~Gadav~~~pP~y~--~~s~~~i~~~f~~v~~a-~~-~pvilYn~~g-------~~l~ 144 (296)
T TIGR03249 82 ------GGNTSDAIEIARLAEKAGADGYLLLPPYLI--NGEQEGLYAHVEAVCES-TD-LGVIVYQRDN-------AVLN 144 (296)
T ss_pred ------CccHHHHHHHHHHHHHhCCCEEEECCCCCC--CCCHHHHHHHHHHHHhc-cC-CCEEEEeCCC-------CCCC
Confidence 124566777788887763333333333222 34789999999999875 22 4454454332 1345
Q ss_pred HHHHHHHH
Q 019890 315 PEAFERYR 322 (334)
Q Consensus 315 P~~f~~~~ 322 (334)
|+.+.++.
T Consensus 145 ~~~~~~La 152 (296)
T TIGR03249 145 ADTLERLA 152 (296)
T ss_pred HHHHHHHH
Confidence 65555543
No 354
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=44.80 E-value=34 Score=34.14 Aligned_cols=164 Identities=16% Similarity=0.188 Sum_probs=79.8
Q ss_pred HHHHHHHhhcCchhhhhccCCCCCcccccCCCCCcceEEEEeecCCCCCCCCCcccCCCCCCCCCCchhHHHHHHHHHHC
Q 019890 93 VQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRAPPPPDPDEPTNVAEAIASW 172 (334)
Q Consensus 93 ~~~~~~l~~~~L~Tvceea~cpni~ec~~~~~~~~~Tatfm~igdgCtr~C~FC~V~~~r~p~~ld~~Ep~~~A~av~~~ 172 (334)
..+-.+|++.|.+.| +-.-|.+- .+ ..--+.+...+.|+.+++.
T Consensus 27 ~d~~~ilk~~G~N~v--------RlRvwv~P------------~~----------------~g~~~~~~~~~~akrak~~ 70 (332)
T PF07745_consen 27 KDLFQILKDHGVNAV--------RLRVWVNP------------YD----------------GGYNDLEDVIALAKRAKAA 70 (332)
T ss_dssp --HHHHHHHTT--EE--------EEEE-SS-------------TT----------------TTTTSHHHHHHHHHHHHHT
T ss_pred CCHHHHHHhcCCCeE--------EEEeccCC------------cc----------------cccCCHHHHHHHHHHHHHC
Confidence 567778999999998 22234332 11 2356889999999999999
Q ss_pred CCcEEEEeeecCCCCCCchH---------HHHHHHHHHHHhhCCCCceeee--ecccc--ccccccchhhHHHHHHhhcC
Q 019890 173 GLDYVVITSVDRDDLADQGS---------GHFAQTVRKLKELKPNMLIEAL--VAKSG--LNVFAHNIETVEELQSAVRD 239 (334)
Q Consensus 173 GlkeVVLTSv~rdDl~d~Ga---------~~fa~lIr~Ik~~~P~i~vE~L--l~~ag--~dv~~HnlETv~~l~~~Vr~ 239 (334)
|++-. |.=.=.|.-.|-|. ..++++-++|... +-++| |+++| ||.+.--=|+..-++-..-
T Consensus 71 Gm~vl-ldfHYSD~WaDPg~Q~~P~aW~~~~~~~l~~~v~~y----T~~vl~~l~~~G~~pd~VQVGNEin~Gmlwp~g- 144 (332)
T PF07745_consen 71 GMKVL-LDFHYSDFWADPGKQNKPAAWANLSFDQLAKAVYDY----TKDVLQALKAAGVTPDMVQVGNEINNGMLWPDG- 144 (332)
T ss_dssp T-EEE-EEE-SSSS--BTTB-B--TTCTSSSHHHHHHHHHHH----HHHHHHHHHHTT--ESEEEESSSGGGESTBTTT-
T ss_pred CCeEE-EeecccCCCCCCCCCCCCccCCCCCHHHHHHHHHHH----HHHHHHHHHHCCCCccEEEeCccccccccCcCC-
Confidence 99854 22111222222220 0223333333221 11122 22222 2222222222222221111
Q ss_pred CCCCHHHHHHHHHHHHHhCCCcceEeeceEEec--CCCHHHHHHHHHHHHH--cCCcEEeeccC
Q 019890 240 HRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC--GETPDQVVSTMEKVRA--AGVDVMTFGQY 299 (334)
Q Consensus 240 r~~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGl--GETdEE~~etl~~Lre--~gvd~vtigqY 299 (334)
+..++++...+|....+...+ +.-.+-+||-+ |...+.+.--++.|++ +++|++.+.-|
T Consensus 145 ~~~~~~~~a~ll~ag~~AVr~-~~p~~kV~lH~~~~~~~~~~~~~f~~l~~~g~d~DviGlSyY 207 (332)
T PF07745_consen 145 KPSNWDNLAKLLNAGIKAVRE-VDPNIKVMLHLANGGDNDLYRWFFDNLKAAGVDFDVIGLSYY 207 (332)
T ss_dssp CTT-HHHHHHHHHHHHHHHHT-HSSTSEEEEEES-TTSHHHHHHHHHHHHHTTGG-SEEEEEE-
T ss_pred CccCHHHHHHHHHHHHHHHHh-cCCCCcEEEEECCCCchHHHHHHHHHHHhcCCCcceEEEecC
Confidence 246677777776433332222 23346678888 7777788888888888 55778888655
No 355
>PRK00035 hemH ferrochelatase; Reviewed
Probab=44.79 E-value=3e+02 Score=26.72 Aligned_cols=26 Identities=15% Similarity=0.063 Sum_probs=21.6
Q ss_pred CHHHHHHHHHHHHHcCCcEEeeccCc
Q 019890 275 TPDQVVSTMEKVRAAGVDVMTFGQYM 300 (334)
Q Consensus 275 TdEE~~etl~~Lre~gvd~vtigqYl 300 (334)
+.-++.++|..|.+.|+..|.+.+|+
T Consensus 246 l~P~~~~~l~~l~~~g~k~V~v~P~~ 271 (333)
T PRK00035 246 LEPYTDDTLEELAEKGVKKVVVVPPG 271 (333)
T ss_pred CCCCHHHHHHHHHHcCCCeEEEECCe
Confidence 34688999999999999999888764
No 356
>KOG1560 consensus Translation initiation factor 3, subunit h (eIF-3h) [Translation, ribosomal structure and biogenesis]
Probab=44.76 E-value=35 Score=33.53 Aligned_cols=53 Identities=17% Similarity=0.401 Sum_probs=40.6
Q ss_pred HHHHHHHHHHhCCCcceEeeceEEec---C----------------CCHH------------HHHHHHHHHHHcCCcEEe
Q 019890 247 SLDVLMMAKDYVPAGTLTKTSIMLGC---G----------------ETPD------------QVVSTMEKVRAAGVDVMT 295 (334)
Q Consensus 247 sL~vL~~ak~~~p~Gl~tkTgiMVGl---G----------------ETdE------------E~~etl~~Lre~gvd~vt 295 (334)
-++++++.++.+|+ .-.+.|.++|+ | |.++ +-.++|+.||-+++|+.+
T Consensus 22 VMkiiKHc~ee~~n-~d~~~GvL~Glvvd~~LeITncFp~p~~~~~edda~~~~~~de~rq~~~l~mlrrlr~vnid~~h 100 (339)
T KOG1560|consen 22 VMKIIKHCREEFPN-GDGTQGVLLGLVVDGRLEITNCFPFPSVLENEDDAVNKSVSDEARQAYQLAMLRRLRYVNIDHLH 100 (339)
T ss_pred HHHHHHHHHhhcCC-cchhhheeeeeeecceeEeecccCCCccCCCccchhhhhhhHHHHHHHHHHHHHHhhhcCcccee
Confidence 35788888888888 46788999997 2 2222 246778999999999999
Q ss_pred eccCc
Q 019890 296 FGQYM 300 (334)
Q Consensus 296 igqYl 300 (334)
+|=|.
T Consensus 101 VGwYq 105 (339)
T KOG1560|consen 101 VGWYQ 105 (339)
T ss_pred eeeee
Confidence 99775
No 357
>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase. This model represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. Several species, including E. coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterized protein.
Probab=44.59 E-value=3e+02 Score=28.15 Aligned_cols=63 Identities=11% Similarity=0.161 Sum_probs=41.7
Q ss_pred CCCCHHHHHHHHHHHHHhCCCcceEeeceE-----E--e--cCC----CHHHH----HHHHHHHHHcCCcEEeeccCcCC
Q 019890 240 HRANFKQSLDVLMMAKDYVPAGTLTKTSIM-----L--G--CGE----TPDQV----VSTMEKVRAAGVDVMTFGQYMRP 302 (334)
Q Consensus 240 r~~tye~sL~vL~~ak~~~p~Gl~tkTgiM-----V--G--lGE----TdEE~----~etl~~Lre~gvd~vtigqYlrP 302 (334)
++.+.+...+.++.+.+..|+.+.+- .++ . + .++ ++++. ....+.|.+.|+....+..|.+|
T Consensus 213 Pgqt~e~~~~tl~~~~~l~~~~is~y-~L~~~p~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~L~~~Gy~~~~~~~fa~~ 291 (455)
T TIGR00538 213 PKQTKESFAKTLEKVAELNPDRLAVF-NYAHVPWVKPAQRKIPEAALPSAEEKLDILQETIAFLTEAGYQFIGMDHFAKP 291 (455)
T ss_pred CCCCHHHHHHHHHHHHhcCCCEEEEe-cCccccchhHHHhcccccCCCCHHHHHHHHHHHHHHHHHCCCEEEeccceeCC
Confidence 57788888899999988877633221 111 0 1 111 33443 44556678899999999999998
Q ss_pred C
Q 019890 303 S 303 (334)
Q Consensus 303 ~ 303 (334)
.
T Consensus 292 ~ 292 (455)
T TIGR00538 292 D 292 (455)
T ss_pred C
Confidence 6
No 358
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=44.30 E-value=88 Score=30.13 Aligned_cols=52 Identities=10% Similarity=0.171 Sum_probs=37.9
Q ss_pred CCchhHHHHHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhCCCCcee
Q 019890 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIE 212 (334)
Q Consensus 157 ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~P~i~vE 212 (334)
.+++.+.+.++++.++|.+.|.|-=- ..-.-...+.++++.|++..|++.++
T Consensus 144 ~~~~~~~~~~~~~~~~G~~~i~l~DT----~G~~~P~~v~~l~~~l~~~~~~~~i~ 195 (280)
T cd07945 144 DSPDYVFQLVDFLSDLPIKRIMLPDT----LGILSPFETYTYISDMVKRYPNLHFD 195 (280)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEecCC----CCCCCHHHHHHHHHHHHhhCCCCeEE
Confidence 46789999999999999999887211 11223467889999999877765443
No 359
>PRK05799 coproporphyrinogen III oxidase; Provisional
Probab=44.14 E-value=3.3e+02 Score=26.86 Aligned_cols=64 Identities=14% Similarity=0.226 Sum_probs=42.3
Q ss_pred CCCCHHHHHHHHHHHHHhCCCcceEeeceEE------------e-cCC-CHH----HHHHHHHHHHHcCCcEEeeccCcC
Q 019890 240 HRANFKQSLDVLMMAKDYVPAGTLTKTSIML------------G-CGE-TPD----QVVSTMEKVRAAGVDVMTFGQYMR 301 (334)
Q Consensus 240 r~~tye~sL~vL~~ak~~~p~Gl~tkTgiMV------------G-lGE-TdE----E~~etl~~Lre~gvd~vtigqYlr 301 (334)
++.+.+++.+.++.+.+..|+.+.+ -.+.+ | +.. +++ -+....+.|.+.|+....+..|.+
T Consensus 161 Pgqt~e~~~~~l~~~~~l~~~~is~-y~l~~~pgT~l~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~Gy~~ye~~~fa~ 239 (374)
T PRK05799 161 PNQTLEDWKETLEKVVELNPEHISC-YSLIIEEGTPFYNLYENGKLKLPDEEEEREMYHYTIEFLKEKGYHQYEISNFAK 239 (374)
T ss_pred CCCCHHHHHHHHHHHHhcCCCEEEE-eccEecCCCHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHcCCcEEeeeeeEC
Confidence 4678888888888888876663222 22332 1 111 122 244566789999999999999999
Q ss_pred CCC
Q 019890 302 PSK 304 (334)
Q Consensus 302 P~~ 304 (334)
|..
T Consensus 240 ~~~ 242 (374)
T PRK05799 240 PGK 242 (374)
T ss_pred CCc
Confidence 863
No 360
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=43.89 E-value=54 Score=32.42 Aligned_cols=50 Identities=10% Similarity=0.098 Sum_probs=34.7
Q ss_pred HHHHHHHHHHhCCCc-ceEeece---EEe--cCCCHHHHHHHHHHHHHcCCcEEee
Q 019890 247 SLDVLMMAKDYVPAG-TLTKTSI---MLG--CGETPDQVVSTMEKVRAAGVDVMTF 296 (334)
Q Consensus 247 sL~vL~~ak~~~p~G-l~tkTgi---MVG--lGETdEE~~etl~~Lre~gvd~vti 296 (334)
.+++|+.+|+..+.. +.++-+. +-| .|.+.||..+.++.|.+.|+|.+++
T Consensus 205 ~~eii~air~~vg~d~v~vRis~~~~~~~~~~~~~~ee~~~~~~~l~~~g~d~i~v 260 (338)
T cd02933 205 LLEVVDAVAEAIGADRVGIRLSPFGTFNDMGDSDPEATFSYLAKELNKRGLAYLHL 260 (338)
T ss_pred HHHHHHHHHHHhCCCceEEEECccccCCCCCCCCCHHHHHHHHHHHHHcCCcEEEE
Confidence 357888888765431 2222221 112 3679999999999999999999998
No 361
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=43.74 E-value=2.8e+02 Score=25.93 Aligned_cols=23 Identities=22% Similarity=0.446 Sum_probs=19.3
Q ss_pred CCchhHHHHHHHHHHCCCcEEEE
Q 019890 157 PDPDEPTNVAEAIASWGLDYVVI 179 (334)
Q Consensus 157 ld~~Ep~~~A~av~~~GlkeVVL 179 (334)
.+.++..+.++++.+.|++.+-|
T Consensus 11 P~~~~~~~~~~~l~~~Gad~iel 33 (242)
T cd04724 11 PDLETTLEILKALVEAGADIIEL 33 (242)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEE
Confidence 55678888999999999998877
No 362
>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=43.72 E-value=1.7e+02 Score=27.33 Aligned_cols=114 Identities=13% Similarity=0.215 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhCCCCceeee-----------eccccccccccchhh
Q 019890 161 EPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEAL-----------VAKSGLNVFAHNIET 229 (334)
Q Consensus 161 Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~P~i~vE~L-----------l~~ag~dv~~HnlET 229 (334)
+|.+.|+...+.|++++.+ +|.|-....+... ++|++|.+.... .+++= +.+.|.+.+--|-++
T Consensus 31 dP~~~a~~~~~~ga~~lhi--vDLd~a~~~~~n~--~~i~~i~~~~~~-~v~vGGGIrs~e~~~~~l~~Ga~kvvigt~a 105 (232)
T PRK13586 31 NPIEIASKLYNEGYTRIHV--VDLDAAEGVGNNE--MYIKEISKIGFD-WIQVGGGIRDIEKAKRLLSLDVNALVFSTIV 105 (232)
T ss_pred CHHHHHHHHHHCCCCEEEE--EECCCcCCCcchH--HHHHHHHhhCCC-CEEEeCCcCCHHHHHHHHHCCCCEEEECchh
Q ss_pred HHHHHHhhcCCCCCHHHHHHHHHHHHHhC-CCcceEeece-------EEecCCCHHHHHHHHHHHHHcCCcEE
Q 019890 230 VEELQSAVRDHRANFKQSLDVLMMAKDYV-PAGTLTKTSI-------MLGCGETPDQVVSTMEKVRAAGVDVM 294 (334)
Q Consensus 230 v~~l~~~Vr~r~~tye~sL~vL~~ak~~~-p~Gl~tkTgi-------MVGlGETdEE~~etl~~Lre~gvd~v 294 (334)
+... ++++.+.+.+ +.-+.+.-++ +=|--|+.-+..+.++.+.+.|+..+
T Consensus 106 ~~~p---------------~~~~~~~~~~g~~~ivvslD~~~~~~v~~~gw~~~~~~~~e~~~~l~~~g~~~i 163 (232)
T PRK13586 106 FTNF---------------NLFHDIVREIGSNRVLVSIDYDNTKRVLIRGWKEKSMEVIDGIKKVNELELLGI 163 (232)
T ss_pred hCCH---------------HHHHHHHHHhCCCCEEEEEEcCCCCEEEccCCeeCCCCHHHHHHHHHhcCCCEE
No 363
>PRK08185 hypothetical protein; Provisional
Probab=43.39 E-value=3.2e+02 Score=26.60 Aligned_cols=151 Identities=15% Similarity=0.194 Sum_probs=81.1
Q ss_pred CCchhHHHHHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhCCCCceeee-eccccccccccchhhHHHHHH
Q 019890 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEAL-VAKSGLNVFAHNIETVEELQS 235 (334)
Q Consensus 157 ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~P~i~vE~L-l~~ag~dv~~HnlETv~~l~~ 235 (334)
.+.+.+..+.+++.+.+.-=|+-++... ....|.. ++..++.+.+.. +|.+. =.|-|. .+|.+.+...
T Consensus 21 ~n~e~~~avi~AAee~~sPvIl~~~~~~--~~~~~~~-~~~~~~~~a~~~---~vPV~lHLDHg~-----~~e~i~~ai~ 89 (283)
T PRK08185 21 ADSCFLRAVVEEAEANNAPAIIAIHPNE--LDFLGDN-FFAYVRERAKRS---PVPFVIHLDHGA-----TIEDVMRAIR 89 (283)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEEeCcch--hhhccHH-HHHHHHHHHHHC---CCCEEEECCCCC-----CHHHHHHHHH
Confidence 5788888999999999888777666543 2223433 777887776643 22221 001111 1233322111
Q ss_pred ----h-h-cCCCCCHHHHHHHHHHHHHhCC-CcceE--eeceEEecCCCH------H----HHHHHHHHHHHcCCcEEee
Q 019890 236 ----A-V-RDHRANFKQSLDVLMMAKDYVP-AGTLT--KTSIMLGCGETP------D----QVVSTMEKVRAAGVDVMTF 296 (334)
Q Consensus 236 ----~-V-r~r~~tye~sL~vL~~ak~~~p-~Gl~t--kTgiMVGlGETd------E----E~~etl~~Lre~gvd~vti 296 (334)
+ | +....+|++.++.-+++.++.. .|+.+ .-|. ||..|.. + +..+..+++++.|+|.+.+
T Consensus 90 ~Gf~SVM~D~S~l~~eeNi~~t~~vv~~a~~~gv~vE~ElG~-vg~~e~~~~~~~~~~~~t~peea~~f~~~TgvD~LAv 168 (283)
T PRK08185 90 CGFTSVMIDGSLLPYEENVALTKEVVELAHKVGVSVEGELGT-IGNTGTSIEGGVSEIIYTDPEQAEDFVSRTGVDTLAV 168 (283)
T ss_pred cCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEee-ccCcccccccccccccCCCHHHHHHHHHhhCCCEEEe
Confidence 1 1 1123467766655554443221 13433 3344 4542221 1 6778899999999999988
Q ss_pred ------ccCcCCCCCCCcccccCCHHHHHHHHHHHHHh
Q 019890 297 ------GQYMRPSKRHMPVSEYITPEAFERYRALGMEM 328 (334)
Q Consensus 297 ------gqYlrP~~~h~~v~~yv~P~~f~~~~~~a~~~ 328 (334)
|.|-...+..+. |+.++++....
T Consensus 169 aiGt~HG~y~~~~kp~L~---------~e~l~~I~~~~ 197 (283)
T PRK08185 169 AIGTAHGIYPKDKKPELQ---------MDLLKEINERV 197 (283)
T ss_pred ccCcccCCcCCCCCCCcC---------HHHHHHHHHhh
Confidence 445432233232 67777776543
No 364
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=43.31 E-value=94 Score=28.03 Aligned_cols=52 Identities=17% Similarity=0.274 Sum_probs=34.1
Q ss_pred CHHHHHHHHHHHHHhCCCcceEeeceEEecCCCH-HHHHHHHHHHHHcCCcEEeecc
Q 019890 243 NFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETP-DQVVSTMEKVRAAGVDVMTFGQ 298 (334)
Q Consensus 243 tye~sL~vL~~ak~~~p~Gl~tkTgiMVGlGETd-EE~~etl~~Lre~gvd~vtigq 298 (334)
+.+...++++.+++..+..+.++ +=. |.++ ++..+.++.|.+.|+|.+++..
T Consensus 107 ~~~~~~eii~~v~~~~~~~v~vk--~r~--~~~~~~~~~~~~~~l~~~Gvd~i~v~~ 159 (231)
T cd02801 107 DPELVAEIVRAVREAVPIPVTVK--IRL--GWDDEEETLELAKALEDAGASALTVHG 159 (231)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEE--Eee--ccCCchHHHHHHHHHHHhCCCEEEECC
Confidence 44556677888877643112233 222 3333 5899999999999999998753
No 365
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=43.25 E-value=2.1e+02 Score=27.42 Aligned_cols=52 Identities=23% Similarity=0.303 Sum_probs=33.2
Q ss_pred CCCCCchhHHHHHH-------HHHHCCCcEEEEeee-------------c-CCCCCCch-----HHHHHHHHHHHHhhC
Q 019890 154 PPPPDPDEPTNVAE-------AIASWGLDYVVITSV-------------D-RDDLADQG-----SGHFAQTVRKLKELK 206 (334)
Q Consensus 154 p~~ld~~Ep~~~A~-------av~~~GlkeVVLTSv-------------~-rdDl~d~G-----a~~fa~lIr~Ik~~~ 206 (334)
|..++.+||.++.+ .+.+.|++-|-|-+. | |.| ..+| ...+.++|++|++..
T Consensus 128 ~~~mt~~ei~~~i~~~~~aA~~a~~aGfDgveih~~~gyL~~qFlsp~~n~R~d-~yGgs~enr~r~~~eii~avr~~~ 205 (327)
T cd02803 128 PREMTKEEIEQIIEDFAAAARRAKEAGFDGVEIHGAHGYLLSQFLSPYTNKRTD-EYGGSLENRARFLLEIVAAVREAV 205 (327)
T ss_pred CCcCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEcchhhhHHHHhcCccccCCCc-ccCCCHHHHHHHHHHHHHHHHHHc
Confidence 34577788866654 445579999888664 2 222 1222 244678999999875
No 366
>COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism]
Probab=43.17 E-value=1.8e+02 Score=28.72 Aligned_cols=77 Identities=19% Similarity=0.238 Sum_probs=63.4
Q ss_pred CCHHHHHHHHHHHHHhCCCcceEeeceEEecCCCHHHHHHHHHHHHHcCCcEEeeccCcCCC-CCCCcccccCCHHHHHH
Q 019890 242 ANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRPS-KRHMPVSEYITPEAFER 320 (334)
Q Consensus 242 ~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGlGETdEE~~etl~~Lre~gvd~vtigqYlrP~-~~h~~v~~yv~P~~f~~ 320 (334)
.+.++.++.++++-+.. + +.+-.++=-|||+ ...+.++.+.+.+.|+.-++|=-=.-|. .-|++-.+.++++++..
T Consensus 61 ~t~~e~~~~vrrI~~a~-~-lPv~vD~dtGfG~-~~nvartV~~~~~aG~agi~iEDq~~pk~cgh~~gk~l~~~~e~v~ 137 (289)
T COG2513 61 TTLDEVLADARRITDAV-D-LPVLVDIDTGFGE-ALNVARTVRELEQAGAAGIHIEDQVGPKRCGHLPGKELVSIDEMVD 137 (289)
T ss_pred ccHHHHHHHHHHHHhhc-C-CceEEeccCCCCc-HHHHHHHHHHHHHcCcceeeeeecccchhcCCCCCCCcCCHHHHHH
Confidence 45777888888887753 3 7889999999999 9999999999999999999997665554 47899999999887654
Q ss_pred H
Q 019890 321 Y 321 (334)
Q Consensus 321 ~ 321 (334)
-
T Consensus 138 r 138 (289)
T COG2513 138 R 138 (289)
T ss_pred H
Confidence 3
No 367
>PRK06582 coproporphyrinogen III oxidase; Provisional
Probab=43.11 E-value=1.9e+02 Score=29.16 Aligned_cols=25 Identities=8% Similarity=-0.052 Sum_probs=17.0
Q ss_pred HHHHHHHHHHcCCcEEeeccCcCCC
Q 019890 279 VVSTMEKVRAAGVDVMTFGQYMRPS 303 (334)
Q Consensus 279 ~~etl~~Lre~gvd~vtigqYlrP~ 303 (334)
+....+.|++.|+....+..|.+|+
T Consensus 228 ~~~~~~~L~~~Gy~~yeis~fa~~g 252 (390)
T PRK06582 228 YEWTNHYLESKKYFRYEISNYAKIG 252 (390)
T ss_pred HHHHHHHHHHcCCceeeceeeeCCC
Confidence 3445566777777777777777775
No 368
>PLN02334 ribulose-phosphate 3-epimerase
Probab=43.08 E-value=98 Score=28.51 Aligned_cols=132 Identities=22% Similarity=0.300 Sum_probs=69.6
Q ss_pred CchhHHHHHHHHHHCCCcEEEEeeecCCCCCCchH-HHHH---HHHHHHHhhCCCC--ceeee----------ecccccc
Q 019890 158 DPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGS-GHFA---QTVRKLKELKPNM--LIEAL----------VAKSGLN 221 (334)
Q Consensus 158 d~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga-~~fa---~lIr~Ik~~~P~i--~vE~L----------l~~ag~d 221 (334)
+...+.+.++.+.+.|++.+.| + ..|+.. ..+. +++++|++. ++. .++++ +.++|.|
T Consensus 18 ~~~~l~~~l~~~~~~g~~~ihl---d---~~d~~f~~~~~~g~~~~~~l~~~-~~~~~~vhlmv~~p~d~~~~~~~~gad 90 (229)
T PLN02334 18 DFANLAEEAKRVLDAGADWLHV---D---VMDGHFVPNLTIGPPVVKALRKH-TDAPLDCHLMVTNPEDYVPDFAKAGAS 90 (229)
T ss_pred CHHHHHHHHHHHHHcCCCEEEE---e---cccCCcCCccccCHHHHHHHHhc-CCCcEEEEeccCCHHHHHHHHHHcCCC
Confidence 4457888999999999999988 2 334310 0111 678888775 332 33433 3444555
Q ss_pred ccccchhhHHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCcceEeeceEEec--C-CCHHHHHHHHHHHHHc-CCcEEeec
Q 019890 222 VFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC--G-ETPDQVVSTMEKVRAA-GVDVMTFG 297 (334)
Q Consensus 222 v~~HnlETv~~l~~~Vr~r~~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGl--G-ETdEE~~etl~~Lre~-gvd~vtig 297 (334)
.+.-++| ...-+...+.++.+++. |+ ++|+ . .|..+..+ .+.+. ++|++.++
T Consensus 91 ~v~vH~~------------q~~~d~~~~~~~~i~~~---g~------~iGls~~~~t~~~~~~---~~~~~~~~Dyi~~~ 146 (229)
T PLN02334 91 IFTFHIE------------QASTIHLHRLIQQIKSA---GM------KAGVVLNPGTPVEAVE---PVVEKGLVDMVLVM 146 (229)
T ss_pred EEEEeec------------cccchhHHHHHHHHHHC---CC------eEEEEECCCCCHHHHH---HHHhccCCCEEEEE
Confidence 4422221 00112335666666653 33 4555 2 35554433 33344 38999777
Q ss_pred cCcCCCCCCCcccccCCHHHHHHHHHHH
Q 019890 298 QYMRPSKRHMPVSEYITPEAFERYRALG 325 (334)
Q Consensus 298 qYlrP~~~h~~v~~yv~P~~f~~~~~~a 325 (334)
.. .|+..- .-..|..++.++++.
T Consensus 147 ~v-~pg~~~----~~~~~~~~~~i~~~~ 169 (229)
T PLN02334 147 SV-EPGFGG----QSFIPSMMDKVRALR 169 (229)
T ss_pred EE-ecCCCc----cccCHHHHHHHHHHH
Confidence 43 355432 123455566665543
No 369
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=42.90 E-value=73 Score=29.12 Aligned_cols=50 Identities=32% Similarity=0.486 Sum_probs=36.1
Q ss_pred CCCchhHHHHHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhCCCC
Q 019890 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNM 209 (334)
Q Consensus 156 ~ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~P~i 209 (334)
..+++++.+.++.+.+.|.+.|.|- |. ..-.....+.++|+.|++..|++
T Consensus 133 ~~~~~~~~~~~~~~~~~g~~~i~l~--Dt--~G~~~P~~v~~lv~~~~~~~~~~ 182 (237)
T PF00682_consen 133 RTDPEELLELAEALAEAGADIIYLA--DT--VGIMTPEDVAELVRALREALPDI 182 (237)
T ss_dssp GSSHHHHHHHHHHHHHHT-SEEEEE--ET--TS-S-HHHHHHHHHHHHHHSTTS
T ss_pred cccHHHHHHHHHHHHHcCCeEEEee--Cc--cCCcCHHHHHHHHHHHHHhccCC
Confidence 3678999999999999999998772 21 12223567899999999987764
No 370
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=42.85 E-value=2.7e+02 Score=26.56 Aligned_cols=105 Identities=18% Similarity=0.307 Sum_probs=62.8
Q ss_pred CCCchhHHHHHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhCCCCceeeeeccccccccccchhhHHHHHH
Q 019890 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVAKSGLNVFAHNIETVEELQS 235 (334)
Q Consensus 156 ~ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~P~i~vE~Ll~~ag~dv~~HnlETv~~l~~ 235 (334)
.++++|..+..+++++.|+..|.|.+-+. + .+-++.|.+..++. |-+ +...|..-..
T Consensus 125 DLp~ee~~~~~~~~~~~gl~~I~lvap~t---~-------~eri~~i~~~s~gf-IY~-vs~~GvTG~~----------- 181 (258)
T PRK13111 125 DLPPEEAEELRAAAKKHGLDLIFLVAPTT---T-------DERLKKIASHASGF-VYY-VSRAGVTGAR----------- 181 (258)
T ss_pred CCCHHHHHHHHHHHHHcCCcEEEEeCCCC---C-------HHHHHHHHHhCCCc-EEE-EeCCCCCCcc-----------
Confidence 57789999999999999999999887652 1 24455566655553 111 1111111100
Q ss_pred hhcCCCCCHHHHHHHHHHHHHhCCCcceEeeceEEecCC-CHHHHHHHHHHHHHcCCcEEeeccC
Q 019890 236 AVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGE-TPDQVVSTMEKVRAAGVDVMTFGQY 299 (334)
Q Consensus 236 ~Vr~r~~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGlGE-TdEE~~etl~~Lre~gvd~vtigqY 299 (334)
...-..-.+.++++|+. +..-+++|||= +.+++.+.+. . .|-+-+|..
T Consensus 182 -----~~~~~~~~~~i~~vk~~------~~~pv~vGfGI~~~e~v~~~~~----~-ADGviVGSa 230 (258)
T PRK13111 182 -----SADAADLAELVARLKAH------TDLPVAVGFGISTPEQAAAIAA----V-ADGVIVGSA 230 (258)
T ss_pred -----cCCCccHHHHHHHHHhc------CCCcEEEEcccCCHHHHHHHHH----h-CCEEEEcHH
Confidence 01112223466666663 24678899988 6677777553 3 677888754
No 371
>PF05582 Peptidase_U57: YabG peptidase U57; InterPro: IPR008764 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belong to MEROPS peptidase family U57 (clan U-). The type example is the YabG protein of Bacillus subtilis. This is a protease involved in the synthesis and maturation of the spore coat proteins SpoIVA and YrbA of B. subtilis [].
Probab=42.52 E-value=64 Score=31.68 Aligned_cols=51 Identities=25% Similarity=0.506 Sum_probs=39.3
Q ss_pred chhHHHHHHHHHHCCCcEEEEeeecC-----CCCCCc----hHHHHHHHHHHHHhhCCCC
Q 019890 159 PDEPTNVAEAIASWGLDYVVITSVDR-----DDLADQ----GSGHFAQTVRKLKELKPNM 209 (334)
Q Consensus 159 ~~Ep~~~A~av~~~GlkeVVLTSv~r-----dDl~d~----Ga~~fa~lIr~Ik~~~P~i 209 (334)
.+.|..+.+.+.+..=+-+||||-|. .|+.|- ...+|.+.|+..++..|+.
T Consensus 140 ~eqp~~i~~Ll~~~~PDIlViTGHD~~~K~~~d~~dl~~YrnSkyFVeaV~~aR~~ep~~ 199 (287)
T PF05582_consen 140 KEQPEKIYRLLEEYRPDILVITGHDGYLKNKKDYSDLNNYRNSKYFVEAVKEARKYEPNL 199 (287)
T ss_pred HHhhHHHHHHHHHcCCCEEEEeCchhhhcCCCChhhhhhhhccHHHHHHHHHHHhcCCCc
Confidence 56788888888888888899999773 334332 3579999999999988874
No 372
>PF04476 DUF556: Protein of unknown function (DUF556); InterPro: IPR007565 The proteins in this entry are functionally uncharacterised.
Probab=42.46 E-value=1.5e+02 Score=28.37 Aligned_cols=137 Identities=18% Similarity=0.280 Sum_probs=0.0
Q ss_pred CCcccCCCCCCCCCCchhHHHHHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhCCC-Cceeee--------
Q 019890 144 RFCNVKTSRAPPPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPN-MLIEAL-------- 214 (334)
Q Consensus 144 ~FC~V~~~r~p~~ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~P~-i~vE~L-------- 214 (334)
..|-++-.-|..+.+|..+...+..+..-|++||-+ |.-...-.+...+.+..++++++...++ ..|-++
T Consensus 51 ~~~pvSAtiGDlp~~p~~~~~aa~~~a~~GvdyvKv-Gl~g~~~~~~a~e~l~~v~~av~~~~~~~~vVAv~yAD~~r~~ 129 (235)
T PF04476_consen 51 GRKPVSATIGDLPMKPGTASLAALGAAATGVDYVKV-GLFGCKDYDEAIEALEAVVRAVKDFDPDKKVVAVGYADAQRVG 129 (235)
T ss_pred CCCceEEEecCCCCCchHHHHHHHHHHhcCCCEEEE-ecCCCCCHHHHHHHHHHHHHHHhhhCCCcEEEEEEecchhhhc
Q ss_pred ----------eccccccccccchhhHHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCcceEeeceEEec-CCCHHHHHHHH
Q 019890 215 ----------VAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC-GETPDQVVSTM 283 (334)
Q Consensus 215 ----------l~~ag~dv~~HnlETv~~l~~~Vr~r~~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGl-GETdEE~~etl 283 (334)
..++|.+..- ++|...==+.+-+ ..+.++--+.++.+|+ .|+|+|| |-= -.+.+
T Consensus 130 ~~~p~~l~~~a~~aG~~gvM--lDTa~Kdg~~L~d-~~~~~~L~~Fv~~ar~---------~gL~~aLAGSL---~~~di 194 (235)
T PF04476_consen 130 SISPLDLPEIAAEAGFDGVM--LDTADKDGGSLFD-HLSEEELAEFVAQARA---------HGLMCALAGSL---RFEDI 194 (235)
T ss_pred CCCHHHHHHHHHHcCCCEEE--EecccCCCCchhh-cCCHHHHHHHHHHHHH---------ccchhhccccC---ChhHH
Q ss_pred HHHHHcCCcEEee
Q 019890 284 EKVRAAGVDVMTF 296 (334)
Q Consensus 284 ~~Lre~gvd~vti 296 (334)
..|+.++.|++.+
T Consensus 195 ~~L~~l~pD~lGf 207 (235)
T PF04476_consen 195 PRLKRLGPDILGF 207 (235)
T ss_pred HHHHhcCCCEEEe
No 373
>PRK08444 hypothetical protein; Provisional
Probab=42.44 E-value=62 Score=32.34 Aligned_cols=53 Identities=21% Similarity=0.323 Sum_probs=35.9
Q ss_pred CCCHHHHHHHHHHHHHhCCCcceEee----ce--EE-ecCCCHHHHHHHHHHHHHcCCcEEeec
Q 019890 241 RANFKQSLDVLMMAKDYVPAGTLTKT----SI--ML-GCGETPDQVVSTMEKVRAAGVDVMTFG 297 (334)
Q Consensus 241 ~~tye~sL~vL~~ak~~~p~Gl~tkT----gi--MV-GlGETdEE~~etl~~Lre~gvd~vtig 297 (334)
...++.+.++++.+|+.+|+ +.+++ -| +- -+|-+ ..+.+..|+++|+|.++-+
T Consensus 109 ~~~~e~y~e~ir~Ik~~~p~-i~i~a~s~~Ei~~~a~~~g~~---~~e~l~~LkeAGl~~~~g~ 168 (353)
T PRK08444 109 NYGYEWYLEIFKKIKEAYPN-LHVKAMTAAEVDFLSRKFGKS---YEEVLEDMLEYGVDSMPGG 168 (353)
T ss_pred CCCHHHHHHHHHHHHHHCCC-ceEeeCCHHHHHHHHHHcCCC---HHHHHHHHHHhCcccCCCC
Confidence 34677888999999998887 76654 00 00 01223 4567888999999988763
No 374
>COG1647 Esterase/lipase [General function prediction only]
Probab=42.42 E-value=75 Score=30.43 Aligned_cols=107 Identities=11% Similarity=0.149 Sum_probs=63.4
Q ss_pred hhHHHHHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhCC-CCceeee-----------------ecccccc
Q 019890 160 DEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKP-NMLIEAL-----------------VAKSGLN 221 (334)
Q Consensus 160 ~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~P-~i~vE~L-----------------l~~ag~d 221 (334)
+++...-+.+++.|+.+|.++|.- -||. |+-.+ ....| .-.|-+. ..+.-..
T Consensus 70 ~~v~d~Y~~L~~~gy~eI~v~GlS-----mGGv--~alkl---a~~~p~K~iv~m~a~~~~k~~~~iie~~l~y~~~~kk 139 (243)
T COG1647 70 EDVEDGYRDLKEAGYDEIAVVGLS-----MGGV--FALKL---AYHYPPKKIVPMCAPVNVKSWRIIIEGLLEYFRNAKK 139 (243)
T ss_pred HHHHHHHHHHHHcCCCeEEEEeec-----chhH--HHHHH---HhhCCccceeeecCCcccccchhhhHHHHHHHHHhhh
Confidence 456666678888999999999964 3342 32211 11122 1001110 2223333
Q ss_pred ccccchhhHHHHHHhhcC-CCCCHHHHHHHHHHHHHhCCCcceEeeceEEecCCCHHHH
Q 019890 222 VFAHNIETVEELQSAVRD-HRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQV 279 (334)
Q Consensus 222 v~~HnlETv~~l~~~Vr~-r~~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGlGETdEE~ 279 (334)
+-.-|.|.+++-|+++.+ +..+-.+.-++++.++..+. .|.+-+||+.|+.|+.+
T Consensus 140 ~e~k~~e~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~~~---~I~~pt~vvq~~~D~mv 195 (243)
T COG1647 140 YEGKDQEQIDKEMKSYKDTPMTTTAQLKKLIKDARRSLD---KIYSPTLVVQGRQDEMV 195 (243)
T ss_pred ccCCCHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhhh---hcccchhheecccCCCC
Confidence 444456777777777763 24456666677777776533 47889999999888765
No 375
>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain. Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.
Probab=42.14 E-value=3.2e+02 Score=26.78 Aligned_cols=50 Identities=18% Similarity=0.299 Sum_probs=36.3
Q ss_pred CCHHHHHHHHHHHHHhCCCcceEeeceEEecCCCHHHHHHHHHHHHHcCCcEEeecc
Q 019890 242 ANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQ 298 (334)
Q Consensus 242 ~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGlGETdEE~~etl~~Lre~gvd~vtigq 298 (334)
.+|+.+++.|+.+++..+-=+.+| ++|+|-|. +..+.|.++|+|.+.+.-
T Consensus 161 ~df~~~~~~i~~l~~~~~vPVivK---~~g~g~s~----~~a~~l~~~Gvd~I~vsG 210 (326)
T cd02811 161 RDFRGWLERIEELVKALSVPVIVK---EVGFGISR----ETAKRLADAGVKAIDVAG 210 (326)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEE---ecCCCCCH----HHHHHHHHcCCCEEEECC
Confidence 368888899999988532114556 46788774 566788899999999853
No 376
>TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase. This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization.
Probab=42.04 E-value=2e+02 Score=28.25 Aligned_cols=82 Identities=11% Similarity=0.031 Sum_probs=64.7
Q ss_pred CCCHHHHHHHHHHHHHhCCCcceEeeceEEecCCCHHHHHHHHHHHHHcCCcEEeeccCcCCC-CCCCcccccCCHHHHH
Q 019890 241 RANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRPS-KRHMPVSEYITPEAFE 319 (334)
Q Consensus 241 ~~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGlGETdEE~~etl~~Lre~gvd~vtigqYlrP~-~~h~~v~~yv~P~~f~ 319 (334)
.-++++.++.++++.... + +.+-.++=-|||++.+ +..+.+.+.++|+.-++|=-...|. .-|++-...+++++|.
T Consensus 59 ~l~~~e~~~~~~~I~~~~-~-lPv~aD~dtGyG~~~~-v~r~V~~~~~aGaagi~IEDq~~pK~cg~~~~k~lv~~ee~~ 135 (294)
T TIGR02319 59 FTSVSEQAINAKNIVLAV-D-VPVIMDADAGYGNAMS-VWRATREFERVGIVGYHLEDQVNPKRCGHLEGKRLISTEEMT 135 (294)
T ss_pred CCCHHHHHHHHHHHHhcc-C-CCEEEECCCCCCCcHH-HHHHHHHHHHcCCeEEEEECCCCccccCCCCCccccCHHHHH
Confidence 357888888888888765 3 6788999999999999 8999999999999999997655453 4588878888888765
Q ss_pred HHHHHH
Q 019890 320 RYRALG 325 (334)
Q Consensus 320 ~~~~~a 325 (334)
.==+.|
T Consensus 136 ~kI~Aa 141 (294)
T TIGR02319 136 GKIEAA 141 (294)
T ss_pred HHHHHH
Confidence 443333
No 377
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=41.96 E-value=1.7e+02 Score=27.06 Aligned_cols=132 Identities=8% Similarity=0.025 Sum_probs=62.0
Q ss_pred hhHHHHHHHHHHCCCcEEEEeeecC-CCCCCc-hHHHHHHHHHHHHhhC--CCC--ceeee-eccccccccccchhhHHH
Q 019890 160 DEPTNVAEAIASWGLDYVVITSVDR-DDLADQ-GSGHFAQTVRKLKELK--PNM--LIEAL-VAKSGLNVFAHNIETVEE 232 (334)
Q Consensus 160 ~Ep~~~A~av~~~GlkeVVLTSv~r-dDl~d~-Ga~~fa~lIr~Ik~~~--P~i--~vE~L-l~~ag~dv~~HnlETv~~ 232 (334)
+.+.+..+..+++|.+.|++.++.. .+.... ....+.+.++++.+.. -++ .+|.+ ..+ -+..+-.+.+...+
T Consensus 85 ~~~~~~i~~a~~lga~~i~~~~g~~~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~l~lE~~n~~~-~~~~~~~~~~~~~~ 163 (258)
T PRK09997 85 DGVAAAIRYARALGNKKINCLVGKTPAGFSSEQIHATLVENLRYAANMLMKEDILLLIEPINHFD-IPGFHLTGTRQALK 163 (258)
T ss_pred HHHHHHHHHHHHhCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeCCCcC-CCCCccCCHHHHHH
Confidence 4567777778889999988765432 222211 1233444444443321 122 22221 000 00111122333334
Q ss_pred HHHhhcC--------------CCCCHHHHHHHHHHHHHhCCCcceEeeceEEec-CCCHHHHHHHHHHHHHcCCc-EEee
Q 019890 233 LQSAVRD--------------HRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC-GETPDQVVSTMEKVRAAGVD-VMTF 296 (334)
Q Consensus 233 l~~~Vr~--------------r~~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGl-GETdEE~~etl~~Lre~gvd-~vti 296 (334)
+.+.+.+ .+.+. .+.++...+.+.. +.++=.---|. |+-.=++.+.++.|++.|++ .+.+
T Consensus 164 ll~~v~~~~v~l~~D~~h~~~~g~~~---~~~~~~~~~ri~~-vHikD~~~~~~~G~G~id~~~i~~aL~~~Gy~G~~~~ 239 (258)
T PRK09997 164 LIDDVGCCNLKIQYDIYHMQRMEGEL---TNTMTQWADKIGH-LQIADNPHRGEPGTGEINYDYLFKVIENSDYNGWVGC 239 (258)
T ss_pred HHHHhCCCCEEEEeEHHHhhhcCCcH---HHHHHHhhCcccE-EEeCCCCCCCCCCCCcCCHHHHHHHHHHhCCCeEEEE
Confidence 4544431 11222 3344444443333 33431111123 66677899999999999998 4433
No 378
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=41.89 E-value=2.8e+02 Score=27.10 Aligned_cols=51 Identities=14% Similarity=0.086 Sum_probs=34.1
Q ss_pred CHHHHHHHHHHHHHhCC-----CcceEeeceEEecCCCHHHHHHHHHHHHHcCCcEEeec
Q 019890 243 NFKQSLDVLMMAKDYVP-----AGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFG 297 (334)
Q Consensus 243 tye~sL~vL~~ak~~~p-----~Gl~tkTgiMVGlGETdEE~~etl~~Lre~gvd~vtig 297 (334)
+.+...++++.+++... --+.+|-+ .+.+++++.+..+.|.+.|+|.|++.
T Consensus 181 ~~~~~~~iv~av~~~~~~~~~~~Pv~vKl~----~~~~~~~~~~ia~~l~~aGad~I~~~ 236 (327)
T cd04738 181 GKEALRELLTAVKEERNKLGKKVPLLVKIA----PDLSDEELEDIADVALEHGVDGIIAT 236 (327)
T ss_pred CHHHHHHHHHHHHHHHhhcccCCCeEEEeC----CCCCHHHHHHHHHHHHHcCCcEEEEE
Confidence 34444566666665431 11445543 35678899999999999999999865
No 379
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=41.54 E-value=2.3e+02 Score=26.95 Aligned_cols=123 Identities=17% Similarity=0.165 Sum_probs=64.4
Q ss_pred HHHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhCCCCceeee---------ecccccc-ccccchhhHHHH
Q 019890 164 NVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEAL---------VAKSGLN-VFAHNIETVEEL 233 (334)
Q Consensus 164 ~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~P~i~vE~L---------l~~ag~d-v~~HnlETv~~l 233 (334)
.++|.+...|+++|+|=..+. ..+.+.+.++|+++...--...|.+- +.|+|.+ ++--+++|++..
T Consensus 31 ~~~e~~a~~G~D~v~iD~EHg----~~~~~~~~~~i~a~~~~g~~~lVRvp~~~~~~i~r~LD~Ga~giivP~v~tae~a 106 (256)
T PRK10558 31 ITTEVLGLAGFDWLVLDGEHA----PNDVSTFIPQLMALKGSASAPVVRVPTNEPVIIKRLLDIGFYNFLIPFVETAEEA 106 (256)
T ss_pred HHHHHHHhcCCCEEEEccccC----CCCHHHHHHHHHHHhhcCCCcEEECCCCCHHHHHHHhCCCCCeeeecCcCCHHHH
Confidence 455666789999999955432 23345677778777543111122221 6677765 333344554433
Q ss_pred HHh---hc--C----------CCCCHHHHHHHHHHHHHhCCCcceEeeceEEecCCCHHHHHHHHHHHHHcCCcEEeecc
Q 019890 234 QSA---VR--D----------HRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQ 298 (334)
Q Consensus 234 ~~~---Vr--~----------r~~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGlGETdEE~~etl~~Lre~gvd~vtigq 298 (334)
..- .+ | +...|...- +.++..+.+ +.--. +=||.+=+.+.=+.+.--|+|.+.||.
T Consensus 107 ~~~v~a~kypP~G~Rg~~~~~~~~~y~~~~---~y~~~an~~---~~vi~---~IEt~~av~ni~eI~av~gvd~l~iG~ 177 (256)
T PRK10558 107 RRAVASTRYPPEGIRGVSVSHRANMFGTVP---DYFAQSNKN---ITVLV---QIESQQGVDNVDAIAATEGVDGIFVGP 177 (256)
T ss_pred HHHHHHcCCCCCCcCCCCccccccccCChH---HHHHHhccc---cEEEE---EECCHHHHHHHHHHhCCCCCcEEEECH
Confidence 322 22 1 112233221 223332112 22222 259999776655555444799999997
Q ss_pred C
Q 019890 299 Y 299 (334)
Q Consensus 299 Y 299 (334)
+
T Consensus 178 ~ 178 (256)
T PRK10558 178 S 178 (256)
T ss_pred H
Confidence 6
No 380
>COG1105 FruK Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Carbohydrate transport and metabolism]
Probab=41.48 E-value=2.8e+02 Score=27.58 Aligned_cols=126 Identities=17% Similarity=0.139 Sum_probs=73.8
Q ss_pred CcchHHHHHHHhhcCchhhhhccCCCCCcccccCCCCCcceEEEEeecCCCCCCCCCcccCCCCCC-CCCCchhHHHHHH
Q 019890 89 GDKYVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRAP-PPPDPDEPTNVAE 167 (334)
Q Consensus 89 ~~~~~~~~~~l~~~~L~Tvceea~cpni~ec~~~~~~~~~Tatfm~igdgCtr~C~FC~V~~~r~p-~~ld~~Ep~~~A~ 167 (334)
|.+=.-+..+|++.++.+. -++-.+ .|+.=++|-+.=+.. +..-+.| +.++.+|.....+
T Consensus 61 g~tg~~~~~~l~~~gi~~~----------fv~v~g----~TRinvki~~~~~~~-----~Tein~~Gp~is~~~~~~~l~ 121 (310)
T COG1105 61 GFTGEFFVALLKDEGIPDA----------FVEVKG----DTRINVKILDEEDGE-----ETEINFPGPEISEAELEQFLE 121 (310)
T ss_pred CccHHHHHHHHHhcCCCce----------EEEccC----CCeeeEEEEecCCCc-----EEEecCCCCCCCHHHHHHHHH
Confidence 4555557888888877554 122233 266655554331100 0001223 3578888888888
Q ss_pred HHHH-CCCcEEEEeeecCCCCCC-chHHHHHHHHHHHHhhCCCCceee----e--eccccccccccchhhHHHHHHh
Q 019890 168 AIAS-WGLDYVVITSVDRDDLAD-QGSGHFAQTVRKLKELKPNMLIEA----L--VAKSGLNVFAHNIETVEELQSA 236 (334)
Q Consensus 168 av~~-~GlkeVVLTSv~rdDl~d-~Ga~~fa~lIr~Ik~~~P~i~vE~----L--l~~ag~dv~~HnlETv~~l~~~ 236 (334)
.+.+ ..-..+|+.|+. +|. .+.+.|+++++.+++....+-+.. | ..+++|..+.-|.+-.+.++.+
T Consensus 122 ~~~~~l~~~d~VvlsGS---lP~g~~~d~y~~li~~~~~~g~~vilD~Sg~~L~~~L~~~P~lIKPN~~EL~~~~g~ 195 (310)
T COG1105 122 QLKALLESDDIVVLSGS---LPPGVPPDAYAELIRILRQQGAKVILDTSGEALLAALEAKPWLIKPNREELEALFGR 195 (310)
T ss_pred HHHHhcccCCEEEEeCC---CCCCCCHHHHHHHHHHHHhcCCeEEEECChHHHHHHHccCCcEEecCHHHHHHHhCC
Confidence 7777 443444555554 444 357889999999988643322222 2 5566788898897766666644
No 381
>cd00465 URO-D_CIMS_like The URO-D_CIMS_like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases, as well as cobalamine (B12) independent methionine synthases. Despite their sequence similarities, members of this family have clearly different functions. Uroporphyrinogen decarboxylase (URO-D) decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, an important branching point of the tetrapyrrole biosynthetic pathway. The methyltransferases represented here are important for ability of methanogenic organisms to use other compounds than carbon dioxide for reduction to methane, and methionine synthases transfer a methyl group from a folate cofactor to L-homocysteine in a reaction requiring zinc.
Probab=41.44 E-value=1.6e+02 Score=27.81 Aligned_cols=67 Identities=18% Similarity=0.149 Sum_probs=36.6
Q ss_pred HHHhCCCcceEeeceEEec-CCCHHHHHHHHHHHHHcCCcEEeeccCcCCCCCCCcccccCCHHHHHHHHHHH
Q 019890 254 AKDYVPAGTLTKTSIMLGC-GETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMPVSEYITPEAFERYRALG 325 (334)
Q Consensus 254 ak~~~p~Gl~tkTgiMVGl-GETdEE~~etl~~Lre~gvd~vtigqYlrP~~~h~~v~~yv~P~~f~~~~~~a 325 (334)
+++..++...+--++.-++ .-|+|++.+..+.+-+.... +-++.|+..-.+....+ |+..+.+-+.+
T Consensus 237 ~~~~~~~~~~i~Ggv~~~~~~~~~e~i~~~v~~~l~~~~~----~~il~~~cgi~~~~~~~-~enl~a~v~a~ 304 (306)
T cd00465 237 AIEKVGEKKTLVGGVDPGYLPATDEECIAKVEELVERLGP----HYIINPDCGLGPDSDYK-PEHLRAVVQLV 304 (306)
T ss_pred HHHHhCCCEEEECCCCccccCCCHHHHHHHHHHHHHHhCC----CeEEeCCCCCCCCCCCc-HHHHHHHHHHh
Confidence 3444443244444444434 56678898888888775432 22445655444443333 66666665544
No 382
>PRK05926 hypothetical protein; Provisional
Probab=41.24 E-value=35 Score=34.32 Aligned_cols=53 Identities=19% Similarity=0.265 Sum_probs=36.8
Q ss_pred CCCHHHHHHHHHHHHHhCCCcceEee--ceEEec-----CCCHHHHHHHHHHHHHcCCcEEeec
Q 019890 241 RANFKQSLDVLMMAKDYVPAGTLTKT--SIMLGC-----GETPDQVVSTMEKVRAAGVDVMTFG 297 (334)
Q Consensus 241 ~~tye~sL~vL~~ak~~~p~Gl~tkT--giMVGl-----GETdEE~~etl~~Lre~gvd~vtig 297 (334)
..++++..++++.+|+.+|+ +.+++ ++-+.+ |-+ ..+.++.|+++|+|.++.+
T Consensus 127 ~~~~e~~~e~i~~Ik~~~p~-i~i~a~s~~Ei~~~~~~~~~~---~~e~l~~LkeAGl~~~~g~ 186 (370)
T PRK05926 127 SCNLAYYEELFSKIKQNFPD-LHIKALTAIEYAYLSKLDNLP---VKEVLQTLKIAGLDSIPGG 186 (370)
T ss_pred CCCHHHHHHHHHHHHHhCCC-eeEEECCHHHHHHHHhhcCCC---HHHHHHHHHHcCcCccCCC
Confidence 35677888899999998887 76653 221111 223 3567888999999999875
No 383
>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=41.15 E-value=2.5e+02 Score=27.02 Aligned_cols=52 Identities=21% Similarity=0.166 Sum_probs=38.2
Q ss_pred CCHHHHHHHHHHHHHhCCCcceEeeceEEecCCCHHHHHHHHHHHHHc--CCcEEeec
Q 019890 242 ANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAA--GVDVMTFG 297 (334)
Q Consensus 242 ~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGlGETdEE~~etl~~Lre~--gvd~vtig 297 (334)
.+.+...++++.+++...-=+.+|-+. +-+.+++.+..+.+.+. |+|-++++
T Consensus 140 ~~~~~~~~i~~~v~~~~~iPv~vKl~p----~~~~~~~~~~a~~l~~~~~G~~gi~~~ 193 (294)
T cd04741 140 YDFDATLEYLTAVKAAYSIPVGVKTPP----YTDPAQFDTLAEALNAFACPISFITAT 193 (294)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCC----CCCHHHHHHHHHHHhccccCCcEEEEE
Confidence 467888899999988542114556544 44777899999999999 99988864
No 384
>TIGR02146 LysS_fung_arch homocitrate synthase. This model includes the yeast LYS21 gene which carries out the first step of the alpha-aminoadipate (AAA) lysine biosynthesis pathway. A related pathway is found in Thermus thermophilus. This enzyme is closely related to 2-isopropylmalate synthase (LeuA) and citramalate synthase (CimA), both of which are present in the euryarchaeota. Some archaea have a separate homocitrate synthase (AksA) which also synthesizes longer homocitrate analogs.
Probab=41.09 E-value=3.3e+02 Score=26.11 Aligned_cols=134 Identities=17% Similarity=0.209 Sum_probs=76.5
Q ss_pred CCCchhHHHHHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhCCCCc------eeee--eccccccccccch
Q 019890 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNML------IEAL--VAKSGLNVFAHNI 227 (334)
Q Consensus 156 ~ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~P~i~------vE~L--l~~ag~dv~~Hnl 227 (334)
..+.++..+.++.+.+.|++++-+++.... ++ .....+.+..+.. .+.+. ++.+ ..+.+++.+....
T Consensus 16 ~~~~~~ki~i~~~l~~~Gv~~iE~g~p~~~--~~--~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 90 (344)
T TIGR02146 16 NFSTEQKIEIAKALDEFGIDYIEVTHPAAS--KQ--SRIDIEIIASLGL-KANIVTHIRCRLDDAKVAVELGVDGIDIFF 90 (344)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeCCCCC--HH--HHHHHHHHHhcCC-CcEEEEECCCCHHHHHHHHHCCcCEEEEEE
Confidence 467888899999999999999988774321 11 1112333333321 11110 0000 2344444332221
Q ss_pred h-hHHHHHHhhc-CCCCCHHHHHHHHHHHHHhCCCcceEeeceEEecCCCHHHHHHHHHHHHHcCCcEEeec
Q 019890 228 E-TVEELQSAVR-DHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFG 297 (334)
Q Consensus 228 E-Tv~~l~~~Vr-~r~~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGlGETdEE~~etl~~Lre~gvd~vtig 297 (334)
- ........+. ......++....++.+++. |+.+.-+++-.+-...+++.+..+.+.+++++.+.+-
T Consensus 91 ~~s~~~~~~~~~~~~~~~~~~v~~~~e~a~~~---g~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~i~~~ 159 (344)
T TIGR02146 91 GTSKLLRIAEHRSDAKSILESARETIEYAKSA---GLEVRFSAEDTFRSELADLLSIYETVGVFGVDRVGIA 159 (344)
T ss_pred ecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHC---CCeEEEEEeeCCCCCHHHHHHHHHHHHHCCCCEEEEc
Confidence 1 1112222222 1112234455677788875 5777778887777778999999999999999987553
No 385
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=40.95 E-value=50 Score=34.67 Aligned_cols=57 Identities=16% Similarity=0.274 Sum_probs=41.6
Q ss_pred hHHHHHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhCCCCce---eee-------ecccccccc
Q 019890 161 EPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLI---EAL-------VAKSGLNVF 223 (334)
Q Consensus 161 Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~P~i~v---E~L-------l~~ag~dv~ 223 (334)
+-.+.++++.+.|++-|+|= .+++-.....+.|++||+..|+..| .+. +.++|.|.+
T Consensus 248 ~~~~r~~~l~~ag~d~i~iD------~~~g~~~~~~~~i~~ik~~~p~~~vi~g~v~t~e~a~~a~~aGaD~i 314 (505)
T PLN02274 248 SDKERLEHLVKAGVDVVVLD------SSQGDSIYQLEMIKYIKKTYPELDVIGGNVVTMYQAQNLIQAGVDGL 314 (505)
T ss_pred cHHHHHHHHHHcCCCEEEEe------CCCCCcHHHHHHHHHHHHhCCCCcEEEecCCCHHHHHHHHHcCcCEE
Confidence 44677888999999999883 3444445566899999999887543 222 777888876
No 386
>PF06180 CbiK: Cobalt chelatase (CbiK); InterPro: IPR010388 This group, typified by Salmonella typhimurium CbiK, contains anaerobic cobalt chelatases that act in the anaerobic cobalamin biosynthesis pathway [, ]. Cobalamin (vitamin B12) can be complexed with metal via ATP-dependent reactions (aerobic pathway) (e.g., in Pseudomonas denitrificans) or via ATP-independent reactions (anaerobic pathway) (e.g., in S. typhimurium) [, ]. The corresponding cobalt chelatases are not homologous. This group belongs to the class of ATP-independent, single-subunit chelatases that also includes distantly related protoporphyrin IX (PPIX) ferrochelatase (HemH) (Class II chelatases) []. The structure of S. typhimurium CbiK shows that it has a remarkably similar topology to Bacillus subtilis ferrochelatase despite only weak sequence conservation []. Both enzymes contain a histidine residue identified as the metal ion ligand, but CbiK contains a second histidine in place of the glutamic acid residue identified as a general base in PPIX ferrochelatase []. Site-directed mutagenesis has confirmed a role for this histidine and a nearby glutamic acid in cobalt binding, modulating metal ion specificity as well as catalytic efficiency []. It should be noted that CysG and Met8p, which are multifunctional proteins associated with siroheme biosynthesis, include chelatase activity and can therefore be considered as the third class of chelatases []. As with the class II chelatases, they do not require ATP for activity. However, they are not structurally similar to HemH or CbiK, and it is likely that they have arisen by the acquisition of a chelatase function within a dehydrogenase catalytic framework [, ].; GO: 0016852 sirohydrochlorin cobaltochelatase activity; PDB: 1QGO_A 2XWP_A 2XVZ_A 2XVX_A 2XVY_A.
Probab=40.76 E-value=57 Score=31.41 Aligned_cols=49 Identities=8% Similarity=0.153 Sum_probs=24.6
Q ss_pred CCCCHHHHHHHHHHHHHhCCCcceEeeceEE--ecCCCHHHHHHHHHHHHHc
Q 019890 240 HRANFKQSLDVLMMAKDYVPAGTLTKTSIML--GCGETPDQVVSTMEKVRAA 289 (334)
Q Consensus 240 r~~tye~sL~vL~~ak~~~p~Gl~tkTgiMV--GlGETdEE~~etl~~Lre~ 289 (334)
++..|++-++.++..+..+.. +.+..-++. |..+..+|+.+.++.|.+.
T Consensus 84 pG~Ey~~l~~~v~~~~~~F~~-i~~g~PLL~~~g~~~~~~D~~~va~aL~~~ 134 (262)
T PF06180_consen 84 PGEEYEKLRATVEAYKHDFKK-IVLGRPLLYTMGQENSPEDYEAVAEALAEE 134 (262)
T ss_dssp SSHHHHHHHHHHHHHCCCSSE-EEEE--SCSS-----SHHHHHHHHHHHHCC
T ss_pred CcHhHHHHHHHHHHhhccCCe-EEecccccccccccCChHHHHHHHHHHHHh
Confidence 355566666655554443333 444444444 4556777777777777653
No 387
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=40.71 E-value=2.7e+02 Score=26.74 Aligned_cols=119 Identities=15% Similarity=0.120 Sum_probs=0.0
Q ss_pred CchhHHHHHHHHHHCCCcEEEEeeec----CCCCCCchHHHHHHHHHHHHhhCCCCceeee------eccccccccccch
Q 019890 158 DPDEPTNVAEAIASWGLDYVVITSVD----RDDLADQGSGHFAQTVRKLKELKPNMLIEAL------VAKSGLNVFAHNI 227 (334)
Q Consensus 158 d~~Ep~~~A~av~~~GlkeVVLTSv~----rdDl~d~Ga~~fa~lIr~Ik~~~P~i~vE~L------l~~ag~dv~~Hnl 227 (334)
+.+.+.++|+.+++.|+..+-=-+-+ ...+-.-|.+.+..+.+.-++..=.+..++. +....+|++.
T Consensus 27 s~e~~~~~a~~~~~~g~~~~r~g~~kpRts~~sf~G~G~~gl~~L~~~~~~~Gl~~~Tev~d~~~v~~~~e~vdilq--- 103 (250)
T PRK13397 27 SYDHIRLAASSAKKLGYNYFRGGAYKPRTSAASFQGLGLQGIRYLHEVCQEFGLLSVSEIMSERQLEEAYDYLDVIQ--- 103 (250)
T ss_pred CHHHHHHHHHHHHHcCCCEEEecccCCCCCCcccCCCCHHHHHHHHHHHHHcCCCEEEeeCCHHHHHHHHhcCCEEE---
Q ss_pred hhHHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCcceEeeceEEecCCCHHHHHHHHHHHHHcCCcEEee
Q 019890 228 ETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTF 296 (334)
Q Consensus 228 ETv~~l~~~Vr~r~~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGlGETdEE~~etl~~Lre~gvd~vti 296 (334)
-.+.--+..++|+.+.+.... +.+|+|.|. |.+|+...++.+++.|...+.+
T Consensus 104 ------------Igs~~~~n~~LL~~va~tgkP-Vilk~G~~~----t~~e~~~A~e~i~~~Gn~~i~L 155 (250)
T PRK13397 104 ------------VGARNMQNFEFLKTLSHIDKP-ILFKRGLMA----TIEEYLGALSYLQDTGKSNIIL 155 (250)
T ss_pred ------------ECcccccCHHHHHHHHccCCe-EEEeCCCCC----CHHHHHHHHHHHHHcCCCeEEE
No 388
>PF01244 Peptidase_M19: Membrane dipeptidase (Peptidase family M19); InterPro: IPR008257 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of peptidases belong to the MEROPS peptidase family M19 (membrane dipeptidase family, clan MJ). The protein fold of the peptidase domain for members of this family resembles that of Klebsiella urease, the type example for clan MJ. Renal dipeptidase (rDP) (3.4.13.19 from EC), also known as microsomal dipeptidase, is a zinc-dependent metalloenzyme that hydrolyzes a wide range of dipeptides. It is involved in renal metabolism of glutathione and its conjugates. It is a homodimeric disulphide-linked glycoprotein attached to the renal brush border microvilli membrane by a GPI-anchor. A glutamate residue has recently been shown [,] to be important for the catalytic activity of rDP. rDP seems to be evolutionary related to hypothetical proteins in the PQQ biosynthesis operons of Acinetobacter calcoaceticus and Klebsiella pneumoniae.; GO: 0008235 metalloexopeptidase activity, 0008239 dipeptidyl-peptidase activity, 0016805 dipeptidase activity, 0006508 proteolysis; PDB: 3NEH_B 2RAG_D 3LU2_A 3B40_A 3LY0_A 3FDG_B 2I5G_B 3S2J_A 3S2N_A 3S2L_A ....
Probab=40.54 E-value=44 Score=32.87 Aligned_cols=124 Identities=19% Similarity=0.331 Sum_probs=66.5
Q ss_pred HHHHHHHHCCCcEEEEeeecCCCC---------CCchHHHH-HHHHHHHHhhCCCCceeee----------e-ccccccc
Q 019890 164 NVAEAIASWGLDYVVITSVDRDDL---------ADQGSGHF-AQTVRKLKELKPNMLIEAL----------V-AKSGLNV 222 (334)
Q Consensus 164 ~~A~av~~~GlkeVVLTSv~rdDl---------~d~Ga~~f-a~lIr~Ik~~~P~i~vE~L----------l-~~ag~dv 222 (334)
+..+.+.++|++++-||=-....+ .++|-..| .++|+++.+. ++.|.+- + ....|=+
T Consensus 121 ~~l~~~y~lGvR~~~Lt~n~~N~~a~g~~~~~~~~~GLT~~G~~vV~~mn~l--Gm~vDvSH~s~~t~~Dv~~~s~~Pvi 198 (320)
T PF01244_consen 121 ERLDEFYDLGVRYIGLTWNYRNELADGCGEPGNRDGGLTPFGREVVREMNRL--GMLVDVSHLSEKTFWDVLEISKKPVI 198 (320)
T ss_dssp HHHHHHHHTTEEEEES-SSSBBSSBBBTTSTTTTSSSB-HHHHHHHHHHHHH--T-EEE-TTB-HHHHHHHHHH-SSEEE
T ss_pred HHHHHHHHcCCEEEEEeecCCCccccccccccccCCCcChHHHHHHHHHHHc--CCeeeeccCCHHHHHHHHhhcCCCEE
Confidence 556677889999999994221111 23343333 4677777665 4555443 1 1123445
Q ss_pred cccchhhHHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCcceEeeceEEec-CC------CHHHHHHHHHHHHHc-CCcEE
Q 019890 223 FAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC-GE------TPDQVVSTMEKVRAA-GVDVM 294 (334)
Q Consensus 223 ~~HnlETv~~l~~~Vr~r~~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGl-GE------TdEE~~etl~~Lre~-gvd~v 294 (334)
+.|. .+..+.+. ++.--+ +.|+.+++. +| .+.-.++-.| ++ |-++++++++.+.++ |+|+|
T Consensus 199 aSHS--n~ral~~h---~RNltD---e~iraia~~--GG-viGi~~~~~fl~~~~~~~~~~~~~~~Hi~y~~~l~G~dhV 267 (320)
T PF01244_consen 199 ASHS--NARALCPH---PRNLTD---EQIRAIAER--GG-VIGINFYPAFLGDDWDPRASLDDLVDHIDYIVDLVGIDHV 267 (320)
T ss_dssp ECCE--EBTTTS-----TTSB-H---HHHHHHHHT--T--EEEEESSHHHHSTTHSSG-BHHHHHHHHHHHHHHH-GGGE
T ss_pred Eecc--ChHhhCCC---CCCCCH---HHHHHHHHC--Cc-EEEEEcchhhhcccccccccHHHHHHHHHHHHHhcCCCeE
Confidence 5553 12333333 122222 445555553 34 4666666666 55 699999999997776 89999
Q ss_pred eeccCc
Q 019890 295 TFGQYM 300 (334)
Q Consensus 295 tigqYl 300 (334)
.||.=.
T Consensus 268 giGsDf 273 (320)
T PF01244_consen 268 GIGSDF 273 (320)
T ss_dssp EEE--B
T ss_pred EECccc
Confidence 999643
No 389
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=40.53 E-value=76 Score=31.43 Aligned_cols=50 Identities=18% Similarity=0.256 Sum_probs=33.6
Q ss_pred HHHHHHHHHhCCCcceEeec---eEEecCCCHHHHHHHHHHHHHcCCcEEeecc
Q 019890 248 LDVLMMAKDYVPAGTLTKTS---IMLGCGETPDQVVSTMEKVRAAGVDVMTFGQ 298 (334)
Q Consensus 248 L~vL~~ak~~~p~Gl~tkTg---iMVGlGETdEE~~etl~~Lre~gvd~vtigq 298 (334)
+++|+.+|+..+.-+.++-+ .+-| |-+.+|..+.++.|.+.|+|.+++..
T Consensus 196 ~eii~~ir~~~~~~v~vRis~~d~~~~-G~~~~e~~~i~~~l~~~gvD~i~vs~ 248 (337)
T PRK13523 196 REIIDAVKEVWDGPLFVRISASDYHPG-GLTVQDYVQYAKWMKEQGVDLIDVSS 248 (337)
T ss_pred HHHHHHHHHhcCCCeEEEecccccCCC-CCCHHHHHHHHHHHHHcCCCEEEeCC
Confidence 46666777654210222332 2222 77999999999999999999998854
No 390
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=40.49 E-value=64 Score=31.52 Aligned_cols=54 Identities=20% Similarity=0.404 Sum_probs=37.4
Q ss_pred HHHHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhCCCCceeee----------eccccccccc
Q 019890 163 TNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEAL----------VAKSGLNVFA 224 (334)
Q Consensus 163 ~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~P~i~vE~L----------l~~ag~dv~~ 224 (334)
.++|..+.+.|.++|.|- ..+.+.+.++++.|++..|++.+|+. ++..|+|++.
T Consensus 206 leea~eA~~~GaD~I~LD--------n~~~e~l~~av~~~~~~~~~i~leAsGGIt~~ni~~ya~tGvD~Is 269 (288)
T PRK07428 206 LEQVQEALEYGADIIMLD--------NMPVDLMQQAVQLIRQQNPRVKIEASGNITLETIRAVAETGVDYIS 269 (288)
T ss_pred HHHHHHHHHcCCCEEEEC--------CCCHHHHHHHHHHHHhcCCCeEEEEECCCCHHHHHHHHHcCCCEEE
Confidence 344444557888888772 23467788888888776777777776 6677777765
No 391
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=40.46 E-value=56 Score=34.13 Aligned_cols=59 Identities=19% Similarity=0.391 Sum_probs=44.3
Q ss_pred hhHHHHHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhCCCCceee---e-------eccccccccc
Q 019890 160 DEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEA---L-------VAKSGLNVFA 224 (334)
Q Consensus 160 ~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~P~i~vE~---L-------l~~ag~dv~~ 224 (334)
++..+.++++.+.|++-|+|-+-+ +-...+.++|+.||+.+|++.|=. - +.++|.|.+.
T Consensus 226 ~~~~~~a~~Lv~aGvd~i~~D~a~------~~~~~~~~~i~~ik~~~p~~~v~agnv~t~~~a~~l~~aGad~v~ 294 (479)
T PRK07807 226 GDVAAKARALLEAGVDVLVVDTAH------GHQEKMLEALRAVRALDPGVPIVAGNVVTAEGTRDLVEAGADIVK 294 (479)
T ss_pred hhHHHHHHHHHHhCCCEEEEeccC------CccHHHHHHHHHHHHHCCCCeEEeeccCCHHHHHHHHHcCCCEEE
Confidence 567788889999999999884433 234678999999999999753322 1 7788888775
No 392
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=39.99 E-value=2.2e+02 Score=26.50 Aligned_cols=125 Identities=16% Similarity=0.187 Sum_probs=65.9
Q ss_pred chhHHHHHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhCCCCceeeeeccccccccccch--hhHHHHH-H
Q 019890 159 PDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVAKSGLNVFAHNI--ETVEELQ-S 235 (334)
Q Consensus 159 ~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~P~i~vE~Ll~~ag~dv~~Hnl--ETv~~l~-~ 235 (334)
++.|.+.++.+.+.|.+.|.+-.-. +...+.++++.|++..-.+.|.+. -...++.+.-.+ +.++.+. -
T Consensus 74 ~~~p~~~i~~~~~~Gad~itvH~ea-------~~~~~~~~l~~ik~~G~~~gval~-p~t~~e~l~~~l~~~~vD~Vl~m 145 (228)
T PTZ00170 74 VSNPEKWVDDFAKAGASQFTFHIEA-------TEDDPKAVARKIREAGMKVGVAIK-PKTPVEVLFPLIDTDLVDMVLVM 145 (228)
T ss_pred CCCHHHHHHHHHHcCCCEEEEeccC-------CchHHHHHHHHHHHCCCeEEEEEC-CCCCHHHHHHHHccchhhhHHhh
Confidence 6788999999999999988764321 112267888888875211111111 000111110001 1111111 1
Q ss_pred hhcC--CCCCH-HHHHHHHHHHHHhCCCcceEeeceEEecCCCHHHHHHHHHHHHHcCCcEEeeccCc
Q 019890 236 AVRD--HRANF-KQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYM 300 (334)
Q Consensus 236 ~Vr~--r~~ty-e~sL~vL~~ak~~~p~Gl~tkTgiMVGlGETdEE~~etl~~Lre~gvd~vtigqYl 300 (334)
.+.+ .+..+ .+.++.++++++..+. .. |.|-=|=+. +++..+.+.|+|.+-+|.++
T Consensus 146 ~v~pG~~gq~~~~~~~~ki~~~~~~~~~-~~----I~VdGGI~~----~ti~~~~~aGad~iVvGsaI 204 (228)
T PTZ00170 146 TVEPGFGGQSFMHDMMPKVRELRKRYPH-LN----IQVDGGINL----ETIDIAADAGANVIVAGSSI 204 (228)
T ss_pred hcccCCCCcEecHHHHHHHHHHHHhccc-Ce----EEECCCCCH----HHHHHHHHcCCCEEEEchHH
Confidence 1221 11222 3567788888886553 22 111113333 48889999999999999554
No 393
>PRK02227 hypothetical protein; Provisional
Probab=39.76 E-value=3.5e+02 Score=25.93 Aligned_cols=146 Identities=15% Similarity=0.167 Sum_probs=82.7
Q ss_pred HHHHHHHCCCcEEEEeeecCCCCCCchH--HHHHHHHHHHHhhCCC-Cceeee-----------------eccccccccc
Q 019890 165 VAEAIASWGLDYVVITSVDRDDLADQGS--GHFAQTVRKLKELKPN-MLIEAL-----------------VAKSGLNVFA 224 (334)
Q Consensus 165 ~A~av~~~GlkeVVLTSv~rdDl~d~Ga--~~fa~lIr~Ik~~~P~-i~vE~L-----------------l~~ag~dv~~ 224 (334)
+|+.+.+.|.+-|=+-= |..|+ ..+..+|++|+...++ ..|..- +..+|.|++.
T Consensus 12 EA~~Al~~GaDiIDvK~------P~~GaLGA~~p~vir~Iv~~~~~~~pvSAtiGD~p~~p~~~~~aa~~~a~~GvDyVK 85 (238)
T PRK02227 12 EALEALAGGADIIDVKN------PKEGSLGANFPWVIREIVAAVPGRKPVSATIGDVPYKPGTISLAALGAAATGADYVK 85 (238)
T ss_pred HHHHHHhcCCCEEEccC------CCCCCCCCCCHHHHHHHHHHhCCCCCceeeccCCCCCchHHHHHHHHHHhhCCCEEE
Confidence 34444566766543311 33332 3567788888776654 222111 4455666544
Q ss_pred cchhhHHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCcceEeeceEEecCCCH----HHHHHHHHHHHHcCCcEEeeccCc
Q 019890 225 HNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETP----DQVVSTMEKVRAAGVDVMTFGQYM 300 (334)
Q Consensus 225 HnlETv~~l~~~Vr~r~~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGlGETd----EE~~etl~~Lre~gvd~vtigqYl 300 (334)
.-+ | ...++++.++.++.+-+..+.-..-+.=+.+||-+-. -...+....+.+.||+.+=|=.+.
T Consensus 86 vGl------~-----~~~~~~~~~~~~~~v~~a~~~~~~~~~vVav~yaD~~r~~~~~~~~l~~~a~~aGf~g~MlDTa~ 154 (238)
T PRK02227 86 VGL------Y-----GGKTAEEAVEVMKAVVRAVKDLDPGKIVVAAGYADAHRVGSVSPLSLPAIAADAGFDGAMLDTAI 154 (238)
T ss_pred EcC------C-----CCCcHHHHHHHHHHHHHhhhhcCCCCeEEEEEecccccccCCChHHHHHHHHHcCCCEEEEeccc
Confidence 332 1 2456666666665543222210011344556665422 023467788899999998887776
Q ss_pred CCCCCCCcccccCCHHHHHHHHHHHHHhhc
Q 019890 301 RPSKRHMPVSEYITPEAFERYRALGMEMVS 330 (334)
Q Consensus 301 rP~~~h~~v~~yv~P~~f~~~~~~a~~~~~ 330 (334)
.-.. .+..++++++...|-+.+.+.|-
T Consensus 155 Kdg~---~Lfd~l~~~~L~~Fv~~ar~~Gl 181 (238)
T PRK02227 155 KDGK---SLFDHMDEEELAEFVAEARSHGL 181 (238)
T ss_pred CCCc---chHhhCCHHHHHHHHHHHHHccc
Confidence 4443 46788999999999888887643
No 394
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=39.59 E-value=1.1e+02 Score=25.25 Aligned_cols=39 Identities=21% Similarity=0.297 Sum_probs=27.5
Q ss_pred HHHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhCC
Q 019890 164 NVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKP 207 (334)
Q Consensus 164 ~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~P 207 (334)
+.++++.+.+.+.|+|.+.+. .....+.++++.+++..+
T Consensus 41 ~~~~~a~~~~~d~V~iS~~~~-----~~~~~~~~~~~~L~~~~~ 79 (122)
T cd02071 41 EIVEAAIQEDVDVIGLSSLSG-----GHMTLFPEVIELLRELGA 79 (122)
T ss_pred HHHHHHHHcCCCEEEEcccch-----hhHHHHHHHHHHHHhcCC
Confidence 455566788999999977642 124567888888988745
No 395
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=39.57 E-value=4.1e+02 Score=27.16 Aligned_cols=64 Identities=13% Similarity=0.128 Sum_probs=41.9
Q ss_pred CCCCHHHHHHHHHHHHHhCCCcceEeeceE-----------Ee---c---CCCHHHHHHHHHHHHHcCCcEEeeccCcCC
Q 019890 240 HRANFKQSLDVLMMAKDYVPAGTLTKTSIM-----------LG---C---GETPDQVVSTMEKVRAAGVDVMTFGQYMRP 302 (334)
Q Consensus 240 r~~tye~sL~vL~~ak~~~p~Gl~tkTgiM-----------VG---l---GETdEE~~etl~~Lre~gvd~vtigqYlrP 302 (334)
++.+.+...+.++.+.+..|+.+.+- .++ +| + .|..+.+....+.|.+.|+....+..|.+|
T Consensus 214 Pgqt~e~~~~tl~~~~~l~p~~i~~y-~l~~~p~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~L~~~Gy~~~~~~~far~ 292 (453)
T PRK13347 214 PHQTVESFRETLDKVIALSPDRIAVF-GYAHVPSRRKNQRLIDEAALPDAEERLRQARAVADRLLAAGYVPIGLDHFALP 292 (453)
T ss_pred CCCCHHHHHHHHHHHHhcCCCEEEEe-ccccccchhhHHhcCCccCCcCHHHHHHHHHHHHHHHHHCCCEEEeccceeCC
Confidence 46777788888888887766633221 111 11 1 122234445678899999999999999998
Q ss_pred CC
Q 019890 303 SK 304 (334)
Q Consensus 303 ~~ 304 (334)
..
T Consensus 293 ~~ 294 (453)
T PRK13347 293 DD 294 (453)
T ss_pred Cc
Confidence 64
No 396
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=39.57 E-value=68 Score=32.27 Aligned_cols=58 Identities=22% Similarity=0.398 Sum_probs=39.5
Q ss_pred chhHHHHHHHHHHC--CCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhCCCCce---eee-------ecccccccc
Q 019890 159 PDEPTNVAEAIASW--GLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLI---EAL-------VAKSGLNVF 223 (334)
Q Consensus 159 ~~Ep~~~A~av~~~--GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~P~i~v---E~L-------l~~ag~dv~ 223 (334)
+++.++ ++++.+. |++.||| |...+-..++.+.|+.||+..|+..| .+. +.++|.|.+
T Consensus 106 ~~d~er-~~~L~~a~~~~d~ivi------D~AhGhs~~~i~~ik~ir~~~p~~~viaGNV~T~e~a~~Li~aGAD~i 175 (343)
T TIGR01305 106 DNDLEK-MTSILEAVPQLKFICL------DVANGYSEHFVEFVKLVREAFPEHTIMAGNVVTGEMVEELILSGADIV 175 (343)
T ss_pred HHHHHH-HHHHHhcCCCCCEEEE------ECCCCcHHHHHHHHHHHHhhCCCCeEEEecccCHHHHHHHHHcCCCEE
Confidence 444444 4445555 6999998 34555678899999999999887422 122 778888875
No 397
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=39.29 E-value=3.4e+02 Score=26.55 Aligned_cols=127 Identities=16% Similarity=0.110 Sum_probs=66.9
Q ss_pred CCchhHHHHHHHHHHCCCcEEEEeeecCC---CCCCch------HHHHHHHHHHHHhhCC-CCceeee------------
Q 019890 157 PDPDEPTNVAEAIASWGLDYVVITSVDRD---DLADQG------SGHFAQTVRKLKELKP-NMLIEAL------------ 214 (334)
Q Consensus 157 ld~~Ep~~~A~av~~~GlkeVVLTSv~rd---Dl~d~G------a~~fa~lIr~Ik~~~P-~i~vE~L------------ 214 (334)
-++++..+.|+.+.+.|++.|-|=.+..- .-..+| .+.+.++++++++..| ++.|-+=
T Consensus 72 ~~p~~~~~aA~~~~~~g~d~IdiN~GCP~~~v~~~g~Gs~Ll~~~~~~~eiv~avr~~~~~~~pVsvKiR~g~~~~~~~~ 151 (312)
T PRK10550 72 QYPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAKAMREAVPAHLPVTVKVRLGWDSGERKF 151 (312)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeCCCCchHHhcCCCchHhhcCHHHHHHHHHHHHHhcCCCcceEEEEECCCCCchHHH
Confidence 46777888888888888888877544310 001112 2566788888887654 3322211
Q ss_pred -----eccccccccccchhhHHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCcceEeeceEEecCCCHHHHHHHHHHHHHc
Q 019890 215 -----VAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAA 289 (334)
Q Consensus 215 -----l~~ag~dv~~HnlETv~~l~~~Vr~r~~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGlGETdEE~~etl~~Lre~ 289 (334)
+.++|+|.+.-+--|....| ..+..+ ++.++++|+... +.+ +..|=-.|.+|..+.+ +.-
T Consensus 152 ~~a~~l~~~Gvd~i~Vh~Rt~~~~y---~g~~~~----~~~i~~ik~~~~--iPV---i~nGdI~t~~da~~~l---~~~ 216 (312)
T PRK10550 152 EIADAVQQAGATELVVHGRTKEDGY---RAEHIN----WQAIGEIRQRLT--IPV---IANGEIWDWQSAQQCM---AIT 216 (312)
T ss_pred HHHHHHHhcCCCEEEECCCCCccCC---CCCccc----HHHHHHHHhhcC--CcE---EEeCCcCCHHHHHHHH---hcc
Confidence 33445544432211111111 000113 366777776431 221 1223245777777666 567
Q ss_pred CCcEEeecc
Q 019890 290 GVDVMTFGQ 298 (334)
Q Consensus 290 gvd~vtigq 298 (334)
|+|.|-||.
T Consensus 217 g~DgVmiGR 225 (312)
T PRK10550 217 GCDAVMIGR 225 (312)
T ss_pred CCCEEEEcH
Confidence 999999985
No 398
>PF01120 Alpha_L_fucos: Alpha-L-fucosidase; InterPro: IPR000933 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Family 29 (GH29 from CAZY) encompasses alpha-L-fucosidases (3.2.1.51 from EC) [], which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Alpha-L-fucosidase is responsible for hydrolysing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Fucosylated glycoconjugates are involved in numerous biological events, making alpha-l-fucosidases, the enzymes responsible for their processing, critically important. Deficiency in alpha-l-fucosidase activity is associated with fucosidosis, a lysosomal storage disorder characterised by rapid neurodegeneration, resulting in severe mental and motor deterioration []. The enzyme is a hexamer and displays a two-domain fold, composed of a catalytic (beta/alpha)(8)-like domain and a C-terminal beta-sandwich domain []. Drosophila melanogaster spermatozoa contains an alpha-l-fucosidase that might be involved in fertilisation by interacting with alpha-l-fucose residues on the micropyle of the eggshell []. In human sperm, membrane-associated alpha-l-fucosidase is stable for extended periods of time, which is made possible by membrane domains and compartmentalisation. These help preserve protein integrity []. ; GO: 0004560 alpha-L-fucosidase activity, 0005975 carbohydrate metabolic process; PDB: 3EYP_B 2ZX6_A 2ZWY_B 2ZX8_B 2WSP_A 2ZXA_A 2ZWZ_B 1ODU_B 1HL9_A 2ZX5_B ....
Probab=38.72 E-value=35 Score=33.70 Aligned_cols=56 Identities=20% Similarity=0.296 Sum_probs=31.1
Q ss_pred CCCCCchhHHHHHHHHHHCCCcEEEEeeecCCCC-------CC-------chHHHHHHHHHHHHhhCCCCceeee
Q 019890 154 PPPPDPDEPTNVAEAIASWGLDYVVITSVDRDDL-------AD-------QGSGHFAQTVRKLKELKPNMLIEAL 214 (334)
Q Consensus 154 p~~ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl-------~d-------~Ga~~fa~lIr~Ik~~~P~i~vE~L 214 (334)
|...|+++..+.| +++|.||+|||+.+.|-+ .+ .+.+-+.+++++.++. ++.+-+.
T Consensus 88 p~~fD~dqW~~~a---k~aGakY~VlTakHHDGF~LW~S~~t~~~v~~~~~krDiv~El~~A~rk~--Glk~G~Y 157 (346)
T PF01120_consen 88 PTKFDADQWAKLA---KDAGAKYVVLTAKHHDGFCLWPSKYTDYNVVNSGPKRDIVGELADACRKY--GLKFGLY 157 (346)
T ss_dssp -TT--HHHHHHHH---HHTT-SEEEEEEE-TT--BSS--TT-SSBGGGGGGTS-HHHHHHHHHHHT--T-EEEEE
T ss_pred cccCCHHHHHHHH---HHcCCCEEEeehhhcCccccCCCCCCcccccCCCCCCCHHHHHHHHHHHc--CCeEEEE
Confidence 3446666655555 699999999999876421 11 1235677888888775 5555554
No 399
>TIGR02855 spore_yabG sporulation peptidase YabG. Members of this family are the protein YabG, demonstrated for Bacillus subtilis to be an endopeptidase able to release N-terminal peptides from a number of sporulation proteins, including CotT, CotF, and SpoIVA. It appears to be expressed under control of sigma-K.
Probab=38.55 E-value=70 Score=31.33 Aligned_cols=51 Identities=29% Similarity=0.417 Sum_probs=38.3
Q ss_pred chhHHHHHHHHHHCCCcEEEEeeecC-----CCCCC---c-hHHHHHHHHHHHHhhCCCC
Q 019890 159 PDEPTNVAEAIASWGLDYVVITSVDR-----DDLAD---Q-GSGHFAQTVRKLKELKPNM 209 (334)
Q Consensus 159 ~~Ep~~~A~av~~~GlkeVVLTSv~r-----dDl~d---~-Ga~~fa~lIr~Ik~~~P~i 209 (334)
.+.|..+...+.+..=+-+||||-|. .|+.| | ...+|.++|+..++..|+.
T Consensus 139 ~eqp~~i~~Ll~~~~PDIlViTGHD~~~K~~~d~~dl~~YrnSkyFVeaVk~aR~y~~~~ 198 (283)
T TIGR02855 139 KEMPEKVLDLIEEVRPDILVITGHDAYSKNKGNYMDLNAYRHSKYFVETVREARKYVPSL 198 (283)
T ss_pred hhchHHHHHHHHHhCCCEEEEeCchhhhcCCCChhhhhhhhhhHHHHHHHHHHHhcCCCc
Confidence 46778888888887778899999772 23333 1 3579999999999988874
No 400
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=38.47 E-value=69 Score=29.71 Aligned_cols=47 Identities=26% Similarity=0.315 Sum_probs=36.9
Q ss_pred CCCchhHHHHHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhCCCCce
Q 019890 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLI 211 (334)
Q Consensus 156 ~ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~P~i~v 211 (334)
..++++..++++++.+.|++-+-+|--+ + .-.+.|+++++.+|++.|
T Consensus 16 ~~~~e~a~~~~~al~~~Gi~~iEit~~t----~-----~a~~~i~~l~~~~~~~~v 62 (204)
T TIGR01182 16 IDDVDDALPLAKALIEGGLRVLEVTLRT----P-----VALDAIRLLRKEVPDALI 62 (204)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEEeCCC----c-----cHHHHHHHHHHHCCCCEE
Confidence 3578999999999999999988887633 1 235788889888887544
No 401
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=38.38 E-value=3.8e+02 Score=26.00 Aligned_cols=137 Identities=13% Similarity=0.143 Sum_probs=89.8
Q ss_pred CCCCchhHHHHHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhCCCCceeeeeccccccccccchhhHHHHH
Q 019890 155 PPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVAKSGLNVFAHNIETVEELQ 234 (334)
Q Consensus 155 ~~ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~P~i~vE~Ll~~ag~dv~~HnlETv~~l~ 234 (334)
..+|.+...+.++.+.+.|++-|++-|.+. +.+....+.-.++++..++...+ .+-++.+-
T Consensus 20 g~vD~~a~~~lv~~li~~Gv~gi~~~GttG-E~~~Ls~eEr~~v~~~~v~~~~g----------rvpviaG~-------- 80 (299)
T COG0329 20 GSVDEEALRRLVEFLIAAGVDGLVVLGTTG-ESPTLTLEERKEVLEAVVEAVGG----------RVPVIAGV-------- 80 (299)
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEECCCCc-cchhcCHHHHHHHHHHHHHHHCC----------CCcEEEec--------
Confidence 458999999999999999999998877553 23322333344555555553211 12233322
Q ss_pred HhhcCCCCCHHHHHHHHHHHHHhCCCcceEeeceEEecCCCHHHHHHHHHHHHHcCCcEEeeccCcCCCCCCCcccccCC
Q 019890 235 SAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMPVSEYIT 314 (334)
Q Consensus 235 ~~Vr~r~~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGlGETdEE~~etl~~Lre~gvd~vtigqYlrP~~~h~~v~~yv~ 314 (334)
-..+.++.++..+++++.--+|+.+-+-...... .+++.++++.+.+.- -+++.-|-.|..... -++
T Consensus 81 -----g~~~t~eai~lak~a~~~Gad~il~v~PyY~k~~--~~gl~~hf~~ia~a~--~lPvilYN~P~~tg~----~l~ 147 (299)
T COG0329 81 -----GSNSTAEAIELAKHAEKLGADGILVVPPYYNKPS--QEGLYAHFKAIAEAV--DLPVILYNIPSRTGV----DLS 147 (299)
T ss_pred -----CCCcHHHHHHHHHHHHhcCCCEEEEeCCCCcCCC--hHHHHHHHHHHHHhc--CCCEEEEeCccccCC----CCC
Confidence 2456888899999999986666666665555554 788888888888875 566777877765422 346
Q ss_pred HHHHHHHHH
Q 019890 315 PEAFERYRA 323 (334)
Q Consensus 315 P~~f~~~~~ 323 (334)
|+.+.++.+
T Consensus 148 ~e~i~~la~ 156 (299)
T COG0329 148 PETIARLAE 156 (299)
T ss_pred HHHHHHHhc
Confidence 666666554
No 402
>COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism]
Probab=38.35 E-value=1.5e+02 Score=29.16 Aligned_cols=21 Identities=19% Similarity=0.230 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHcCCcEEee
Q 019890 276 PDQVVSTMEKVRAAGVDVMTF 296 (334)
Q Consensus 276 dEE~~etl~~Lre~gvd~vti 296 (334)
-++-++=.+--.+.|-|.+..
T Consensus 165 ld~AI~Ra~AY~eAGAD~if~ 185 (289)
T COG2513 165 LDDAIERAQAYVEAGADAIFP 185 (289)
T ss_pred HHHHHHHHHHHHHcCCcEEcc
Confidence 344444444445555555443
No 403
>TIGR00587 nfo apurinic endonuclease (APN1). All proteins in this family for which functions are known are 5' AP endonculeases that are used in base excision repair and the repair of abasic sites in DNA.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=37.96 E-value=3.5e+02 Score=25.49 Aligned_cols=145 Identities=10% Similarity=0.116 Sum_probs=75.1
Q ss_pred CCchhHHHHHHHHHHCCCcEEEEeeecCCCC-CCchHHHHHHHHHHHHhhCCCCceeeeeccccccccccchhhHHHHHH
Q 019890 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDL-ADQGSGHFAQTVRKLKELKPNMLIEALVAKSGLNVFAHNIETVEELQS 235 (334)
Q Consensus 157 ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl-~d~Ga~~fa~lIr~Ik~~~P~i~vE~Ll~~ag~dv~~HnlETv~~l~~ 235 (334)
.+.+...+.++..+.+|.++||+..+...+. .+.+...+.+.++.|.+...+ |.+++ +.-+ .+.+++
T Consensus 85 ~sv~~~~~~i~~A~~lga~~vv~H~G~~~~~~~e~~~~~~~~~l~~l~~~~~~--v~l~l-EN~~-~~~~~l-------- 152 (274)
T TIGR00587 85 KSLDVLDEELKRCELLGIMLYNFHPGSALKCSEEEGLDNLIESLNVVIKETKI--VTILL-ENMA-GQGSEL-------- 152 (274)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHhccCC--CEEEE-EeCC-CCCCcc--------
Confidence 4567778888888999999999977664211 111223344444444332222 22221 1000 111111
Q ss_pred hhcCCCCCHHHHHHHHHHHHHhCC-CcceEeeceEEecCCC---HHHHHHHHHHHHHc-C---CcEEeeccCcCC----C
Q 019890 236 AVRDHRANFKQSLDVLMMAKDYVP-AGTLTKTSIMLGCGET---PDQVVSTMEKVRAA-G---VDVMTFGQYMRP----S 303 (334)
Q Consensus 236 ~Vr~r~~tye~sL~vL~~ak~~~p-~Gl~tkTgiMVGlGET---dEE~~etl~~Lre~-g---vd~vtigqYlrP----~ 303 (334)
..+.++..++++.+... | -|+.+=++-+...|+. ++.+.+.++.+.+. | +..+|+....-| .
T Consensus 153 -----~~~~~el~~ll~~~~~~-~~lg~~lDt~H~~~~g~~~~~~~~~~~~~~~~~~~~g~~~i~~vHl~Ds~~~~g~~~ 226 (274)
T TIGR00587 153 -----GRSFEELAYIIKVIVDK-RRIGVCLDTCHFFAAGYDITTKAYFEVVKNEFDVVVGFKYLKAIHLNDSKNVLGSRK 226 (274)
T ss_pred -----CCCHHHHHHHHHhcCCC-CceEEEEEhhhHHhcCCCcCCHHHHHHHHHHHHHhcCHhheeEEEEEcCccccccCc
Confidence 12333334444433210 1 1455666666655764 67788888877643 2 677888765432 2
Q ss_pred CCCCccc-ccCCHHHHH
Q 019890 304 KRHMPVS-EYITPEAFE 319 (334)
Q Consensus 304 ~~h~~v~-~yv~P~~f~ 319 (334)
.+|+++- ..+.-+.|.
T Consensus 227 d~H~~iG~G~i~~~~~~ 243 (274)
T TIGR00587 227 DRHENIGEGIIGFDAFR 243 (274)
T ss_pred CCCCCcCCccCCHHHHH
Confidence 5788885 444444433
No 404
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=37.96 E-value=2.7e+02 Score=26.27 Aligned_cols=106 Identities=17% Similarity=0.211 Sum_probs=59.0
Q ss_pred CCchhHHHHHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhCCC--Cceeee----------eccccccccc
Q 019890 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPN--MLIEAL----------VAKSGLNVFA 224 (334)
Q Consensus 157 ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~P~--i~vE~L----------l~~ag~dv~~ 224 (334)
.|.-.+.++.+.+.+ |++++-+==.|.--.|..... .++|++|++. ++ +.+++. +.++|.|.+.
T Consensus 12 ad~~~l~~el~~l~~-g~d~lH~DiMDG~FVPN~tfg--~~~i~~ir~~-t~~~~DvHLMv~~P~~~i~~~~~aGad~it 87 (229)
T PRK09722 12 MDLLKFKEQIEFLNS-KADYFHIDIMDGHFVPNLTLS--PFFVSQVKKL-ASKPLDVHLMVTDPQDYIDQLADAGADFIT 87 (229)
T ss_pred cCHHHHHHHHHHHHh-CCCEEEEecccCccCCCcccC--HHHHHHHHhc-CCCCeEEEEEecCHHHHHHHHHHcCCCEEE
Confidence 456677888888877 899887622221111221111 4577888764 33 455554 6888999877
Q ss_pred cchhhHHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCcceEeeceEEecCCCHHHHHHHHH
Q 019890 225 HNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTME 284 (334)
Q Consensus 225 HnlETv~~l~~~Vr~r~~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGlGETdEE~~etl~ 284 (334)
-+.|+.. ....++|+.+|+. | .+.|+-+.-+=..+.+...+.
T Consensus 88 ~H~Ea~~-------------~~~~~~i~~Ik~~---G--~kaGlalnP~T~~~~l~~~l~ 129 (229)
T PRK09722 88 LHPETIN-------------GQAFRLIDEIRRA---G--MKVGLVLNPETPVESIKYYIH 129 (229)
T ss_pred ECccCCc-------------chHHHHHHHHHHc---C--CCEEEEeCCCCCHHHHHHHHH
Confidence 7776431 1123455556653 4 356666666644444444443
No 405
>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2. Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids.
Probab=37.93 E-value=94 Score=30.62 Aligned_cols=50 Identities=20% Similarity=0.268 Sum_probs=37.3
Q ss_pred CCHHHHHHHHHHHHHhCCCcceEeeceEEecCCCHHHHHHHHHHHHHcCCcEEeecc
Q 019890 242 ANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQ 298 (334)
Q Consensus 242 ~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGlGETdEE~~etl~~Lre~gvd~vtigq 298 (334)
.+|+.+++.|+.+++..+-=+.+| ++|+|-+ .+..+.|.++|+|.|.++-
T Consensus 162 ~~f~~~le~i~~i~~~~~vPVivK---~~g~g~~----~~~a~~L~~aGvd~I~Vsg 211 (333)
T TIGR02151 162 RNFKGWLEKIAEICSQLSVPVIVK---EVGFGIS----KEVAKLLADAGVSAIDVAG 211 (333)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEE---ecCCCCC----HHHHHHHHHcCCCEEEECC
Confidence 358888899999998642114566 4688755 4677889999999999974
No 406
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=37.67 E-value=1.4e+02 Score=28.18 Aligned_cols=41 Identities=12% Similarity=0.371 Sum_probs=28.8
Q ss_pred CchhHHHHHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhh
Q 019890 158 DPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKEL 205 (334)
Q Consensus 158 d~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~ 205 (334)
=.++|++-++.+.+.|...|.+---. . ..+..++|+.||+.
T Consensus 67 Mv~~P~~~i~~~~~aGad~it~H~Ea---~----~~~~~~~i~~Ik~~ 107 (229)
T PRK09722 67 MVTDPQDYIDQLADAGADFITLHPET---I----NGQAFRLIDEIRRA 107 (229)
T ss_pred EecCHHHHHHHHHHcCCCEEEECccC---C----cchHHHHHHHHHHc
Confidence 35678999999999999987663210 0 12567788888874
No 407
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=37.60 E-value=3.3e+02 Score=25.01 Aligned_cols=104 Identities=21% Similarity=0.279 Sum_probs=64.9
Q ss_pred CCCchhHHHHHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhCCC-Ccee---ee-------eccccccccc
Q 019890 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPN-MLIE---AL-------VAKSGLNVFA 224 (334)
Q Consensus 156 ~ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~P~-i~vE---~L-------l~~ag~dv~~ 224 (334)
..+.++..++++++.+.|++-+-+|--+ ++ -.+.|+.|++.+|. +.|- ++ ..++|.+.+.
T Consensus 18 ~~~~~~~~~~~~a~~~gGi~~iEvt~~~----~~-----~~~~i~~l~~~~~~~~~iGaGTV~~~~~~~~a~~aGA~fiv 88 (206)
T PRK09140 18 GITPDEALAHVGALIEAGFRAIEIPLNS----PD-----PFDSIAALVKALGDRALIGAGTVLSPEQVDRLADAGGRLIV 88 (206)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEeCCC----cc-----HHHHHHHHHHHcCCCcEEeEEecCCHHHHHHHHHcCCCEEE
Confidence 3578999999999999999988887432 21 23578888877764 3321 11 4556665433
Q ss_pred cchhhHHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCcceEeeceEEecCCCHHHHHHHHHHHHHcCCcEEeecc
Q 019890 225 HNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQ 298 (334)
Q Consensus 225 HnlETv~~l~~~Vr~r~~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGlGETdEE~~etl~~Lre~gvd~vtigq 298 (334)
- +..+ .++++.++.. |+ .++.| ..|.+|+.+.. +.|+|++.+|+
T Consensus 89 s--------------p~~~----~~v~~~~~~~---~~----~~~~G-~~t~~E~~~A~----~~Gad~vk~Fp 132 (206)
T PRK09140 89 T--------------PNTD----PEVIRRAVAL---GM----VVMPG-VATPTEAFAAL----RAGAQALKLFP 132 (206)
T ss_pred C--------------CCCC----HHHHHHHHHC---CC----cEEcc-cCCHHHHHHHH----HcCCCEEEECC
Confidence 1 1111 3455555442 22 33444 78888876654 58999999874
No 408
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=37.47 E-value=3.1e+02 Score=24.67 Aligned_cols=102 Identities=24% Similarity=0.336 Sum_probs=61.1
Q ss_pred CCchhHHHHHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhCCCCceee---e-------eccccccccccc
Q 019890 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEA---L-------VAKSGLNVFAHN 226 (334)
Q Consensus 157 ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~P~i~vE~---L-------l~~ag~dv~~Hn 226 (334)
.++++..+.++++.+.|++-|-|+--+. .. .++++.+++..|.+.+.. + ..++|.|.+.
T Consensus 21 ~~~~~~~~~~~~~~~~Gv~~vqlr~k~~------~~---~e~~~~~~~~~~~~~~g~gtvl~~d~~~~A~~~gAdgv~-- 89 (187)
T PRK07455 21 PDLELGLQMAEAVAAGGMRLIEITWNSD------QP---AELISQLREKLPECIIGTGTILTLEDLEEAIAAGAQFCF-- 89 (187)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEeCCCC------CH---HHHHHHHHHhCCCcEEeEEEEEcHHHHHHHHHcCCCEEE--
Confidence 5789999999999999999998875331 12 355556666556543321 1 2334444331
Q ss_pred hhhHHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCcceEeeceEEecCCCHHHHHHHHHHHHHcCCcEEeec
Q 019890 227 IETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFG 297 (334)
Q Consensus 227 lETv~~l~~~Vr~r~~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGlGETdEE~~etl~~Lre~gvd~vtig 297 (334)
.+..+ .++++..+.. |+ ..|+| --|.+|+.+.. +.|+|++.+|
T Consensus 90 ------------~p~~~----~~~~~~~~~~---~~----~~i~G-~~t~~e~~~A~----~~Gadyv~~F 132 (187)
T PRK07455 90 ------------TPHVD----PELIEAAVAQ---DI----PIIPG-ALTPTEIVTAW----QAGASCVKVF 132 (187)
T ss_pred ------------CCCCC----HHHHHHHHHc---CC----CEEcC-cCCHHHHHHHH----HCCCCEEEEC
Confidence 00111 2223333332 23 36788 67888877766 4899999996
No 409
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=37.15 E-value=2.3e+02 Score=26.85 Aligned_cols=112 Identities=16% Similarity=0.225 Sum_probs=65.7
Q ss_pred HHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhCCCCceeee-------eccccccccccchhhHHHHHHhh
Q 019890 165 VAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEAL-------VAKSGLNVFAHNIETVEELQSAV 237 (334)
Q Consensus 165 ~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~P~i~vE~L-------l~~ag~dv~~HnlETv~~l~~~V 237 (334)
++..+...|.+-|.|..-. ++ ...+.++++..+...-.+.+|+. ..+.|+|++..|-..
T Consensus 125 qi~~a~~~GAD~VlLi~~~---l~---~~~l~~li~~a~~lGl~~lvevh~~~E~~~A~~~gadiIgin~rd-------- 190 (260)
T PRK00278 125 QIYEARAAGADAILLIVAA---LD---DEQLKELLDYAHSLGLDVLVEVHDEEELERALKLGAPLIGINNRN-------- 190 (260)
T ss_pred HHHHHHHcCCCEEEEEecc---CC---HHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHcCCCEEEECCCC--------
Confidence 4666788999998887654 32 24678888888775222334444 556788988755111
Q ss_pred cCCCCCHHHHHHHHHHHHHhCCCcceEeeceEEecCCCHHHHHHHHHHHHHcCCcEEeeccCc
Q 019890 238 RDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYM 300 (334)
Q Consensus 238 r~r~~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGlGETdEE~~etl~~Lre~gvd~vtigqYl 300 (334)
..+++-.++...++.+..|++. .-|..|=+-|.+++. .+.++|+|.+-+|..+
T Consensus 191 ---l~~~~~d~~~~~~l~~~~p~~~---~vIaegGI~t~ed~~----~~~~~Gad~vlVGsaI 243 (260)
T PRK00278 191 ---LKTFEVDLETTERLAPLIPSDR---LVVSESGIFTPEDLK----RLAKAGADAVLVGESL 243 (260)
T ss_pred ---cccccCCHHHHHHHHHhCCCCC---EEEEEeCCCCHHHHH----HHHHcCCCEEEECHHH
Confidence 1122222444455555445311 122233355676654 4567899999999774
No 410
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=36.96 E-value=1.4e+02 Score=28.77 Aligned_cols=59 Identities=24% Similarity=0.425 Sum_probs=44.2
Q ss_pred ceEEec--CCCHHHHHHHHHHHHHcCCcEEeeccCcCCCCCCCcccccC--CHHHHHHHHHHHHHhh
Q 019890 267 SIMLGC--GETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMPVSEYI--TPEAFERYRALGMEMV 329 (334)
Q Consensus 267 giMVGl--GETdEE~~etl~~Lre~gvd~vtigqYlrP~~~h~~v~~yv--~P~~f~~~~~~a~~~~ 329 (334)
-+|.|- =|+.|++.+..+.|+++|+..+..+-|- |... |. .|- -.+.++.+++++.++|
T Consensus 29 ~~iaGPCsie~~~~~~~~A~~lk~~g~~~~r~~~~k-pRTs--~~-s~~G~g~~gl~~l~~~~~~~G 91 (266)
T PRK13398 29 IIIAGPCAVESEEQMVKVAEKLKELGVHMLRGGAFK-PRTS--PY-SFQGLGEEGLKILKEVGDKYN 91 (266)
T ss_pred EEEEeCCcCCCHHHHHHHHHHHHHcCCCEEEEeeec-CCCC--CC-ccCCcHHHHHHHHHHHHHHcC
Confidence 488898 8999999999999999999988888665 4332 22 122 3666778888877763
No 411
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=36.67 E-value=3.8e+02 Score=25.45 Aligned_cols=136 Identities=15% Similarity=0.193 Sum_probs=79.7
Q ss_pred CCCCchhHHHHHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhCCCCceeeeeccccccccccchhhHHHHH
Q 019890 155 PPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVAKSGLNVFAHNIETVEELQ 234 (334)
Q Consensus 155 ~~ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~P~i~vE~Ll~~ag~dv~~HnlETv~~l~ 234 (334)
..+|.+...+.++.+.+.|++-+++-|-.. +......+...++++.+.+...+ .+.++.+-
T Consensus 14 g~iD~~~~~~~i~~l~~~Gv~Gi~~~GstG-E~~~Ls~~Er~~~~~~~~~~~~~----------~~~vi~gv-------- 74 (285)
T TIGR00674 14 GSVDFAALEKLIDFQIENGTDAIVVVGTTG-ESPTLSHEEHKKVIEFVVDLVNG----------RVPVIAGT-------- 74 (285)
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEECccCc-ccccCCHHHHHHHHHHHHHHhCC----------CCeEEEeC--------
Confidence 468999999999999999999988755332 12222223344555555443211 12333332
Q ss_pred HhhcCCCCCHHHHHHHHHHHHHhCCCcceEeeceEEecCCCHHHHHHHHHHHHHcCCcEEeeccCcCCCCCCCcccccCC
Q 019890 235 SAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMPVSEYIT 314 (334)
Q Consensus 235 ~~Vr~r~~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGlGETdEE~~etl~~Lre~gvd~vtigqYlrP~~~h~~v~~yv~ 314 (334)
-..+.++.++..+.+++.--+|+.+-.-... .=+++++.+.++.+.+. ++ ++|.-|--|..... -++
T Consensus 75 -----~~~s~~~~i~~a~~a~~~Gad~v~v~pP~y~--~~~~~~i~~~~~~i~~~-~~-~pi~lYn~P~~tg~----~l~ 141 (285)
T TIGR00674 75 -----GSNATEEAISLTKFAEDVGADGFLVVTPYYN--KPTQEGLYQHFKAIAEE-VD-LPIILYNVPSRTGV----SLY 141 (285)
T ss_pred -----CCccHHHHHHHHHHHHHcCCCEEEEcCCcCC--CCCHHHHHHHHHHHHhc-CC-CCEEEEECcHHhcC----CCC
Confidence 1346777888888888864343333333322 34789999999999775 23 56666765642211 344
Q ss_pred HHHHHHHH
Q 019890 315 PEAFERYR 322 (334)
Q Consensus 315 P~~f~~~~ 322 (334)
|+.++++.
T Consensus 142 ~~~l~~L~ 149 (285)
T TIGR00674 142 PETVKRLA 149 (285)
T ss_pred HHHHHHHH
Confidence 55555443
No 412
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=36.57 E-value=2.3e+02 Score=26.46 Aligned_cols=58 Identities=14% Similarity=0.151 Sum_probs=35.2
Q ss_pred HhhcCCCCCHHHHHHHHHHHHHhCCCcceEeeceEEecCCCHHH-HHHHHHHHHHcCCcEEeec
Q 019890 235 SAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQ-VVSTMEKVRAAGVDVMTFG 297 (334)
Q Consensus 235 ~~Vr~r~~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGlGETdEE-~~etl~~Lre~gvd~vtig 297 (334)
+.+. .+.+.+..++.++.+|+.. . + ...+|+=+.--..- +.+.++.+.++|+|.+.+.
T Consensus 53 ~al~-~g~~~~~~~~~~~~vr~~~-~-~--pv~lm~y~n~~~~~G~~~fi~~~~~aG~~giiip 111 (242)
T cd04724 53 RALA-NGVTLKDVLELVKEIRKKN-T-I--PIVLMGYYNPILQYGLERFLRDAKEAGVDGLIIP 111 (242)
T ss_pred HHHH-cCCCHHHHHHHHHHHhhcC-C-C--CEEEEEecCHHHHhCHHHHHHHHHHCCCcEEEEC
Confidence 4455 5788899999999998742 1 2 22233221111111 3556788889999988884
No 413
>PF08219 TOM13: Outer membrane protein TOM13; InterPro: IPR013262 The TOM13 family of proteins are mitochondrial outer membrane proteins that mediate the assembly of beta-barrel proteins [].; GO: 0005741 mitochondrial outer membrane
Probab=36.51 E-value=6 Score=31.35 Aligned_cols=16 Identities=31% Similarity=0.301 Sum_probs=11.8
Q ss_pred ceEeeceEEecCCCHH
Q 019890 262 TLTKTSIMLGCGETPD 277 (334)
Q Consensus 262 l~tkTgiMVGlGETdE 277 (334)
+..=-|+|+||||=-+
T Consensus 42 LPFiNG~MLGFGEl~A 57 (77)
T PF08219_consen 42 LPFINGMMLGFGELFA 57 (77)
T ss_pred hhhhhhhhHhHHHHHH
Confidence 3446799999998544
No 414
>PLN02428 lipoic acid synthase
Probab=36.45 E-value=1.4e+02 Score=30.07 Aligned_cols=49 Identities=18% Similarity=0.352 Sum_probs=37.7
Q ss_pred CCHHHHHHHHHHHHHhCCCcceEeeceEEec-CCCHHHHHHHHHHHHHcCCcEEeec
Q 019890 242 ANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC-GETPDQVVSTMEKVRAAGVDVMTFG 297 (334)
Q Consensus 242 ~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGl-GETdEE~~etl~~Lre~gvd~vtig 297 (334)
...+.+.++++.+++..|. +.+.. +.-+| |. .+.++.|++.|+|.++.+
T Consensus 163 ~ga~~~~elir~Ir~~~P~-i~Ie~-L~pdf~~d-----~elL~~L~eAG~d~i~hn 212 (349)
T PLN02428 163 GGSGHFAETVRRLKQLKPE-ILVEA-LVPDFRGD-----LGAVETVATSGLDVFAHN 212 (349)
T ss_pred ccHHHHHHHHHHHHHhCCC-cEEEE-eCccccCC-----HHHHHHHHHcCCCEEccC
Confidence 4567888999999998886 66655 33355 64 668889999999999887
No 415
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=36.02 E-value=1.3e+02 Score=24.37 Aligned_cols=42 Identities=14% Similarity=0.151 Sum_probs=28.1
Q ss_pred HHHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhCC-CCc
Q 019890 164 NVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKP-NML 210 (334)
Q Consensus 164 ~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~P-~i~ 210 (334)
+..+++.+...+.|+|++.+. .......++++.+++..| ++.
T Consensus 41 ~l~~~~~~~~pdvV~iS~~~~-----~~~~~~~~~i~~l~~~~~~~~~ 83 (119)
T cd02067 41 EIVEAAKEEDADAIGLSGLLT-----THMTLMKEVIEELKEAGLDDIP 83 (119)
T ss_pred HHHHHHHHcCCCEEEEecccc-----ccHHHHHHHHHHHHHcCCCCCe
Confidence 444555677888888866532 134567888999988876 543
No 416
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=35.97 E-value=68 Score=30.47 Aligned_cols=136 Identities=13% Similarity=0.174 Sum_probs=79.6
Q ss_pred CCCCchhHHHHHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhCCCCceeeeeccccccccccchhhHHHHH
Q 019890 155 PPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVAKSGLNVFAHNIETVEELQ 234 (334)
Q Consensus 155 ~~ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~P~i~vE~Ll~~ag~dv~~HnlETv~~l~ 234 (334)
..+|.+...+.++.+.+.|++-+++.|-... ....-.+...++++.+.+..++ ...++.+-
T Consensus 17 g~id~~~~~~~i~~l~~~Gv~gl~~~GstGE-~~~Lt~~Er~~l~~~~~~~~~~----------~~~vi~gv-------- 77 (289)
T PF00701_consen 17 GSIDEDALKRLIDFLIEAGVDGLVVLGSTGE-FYSLTDEERKELLEIVVEAAAG----------RVPVIAGV-------- 77 (289)
T ss_dssp SSB-HHHHHHHHHHHHHTTSSEEEESSTTTT-GGGS-HHHHHHHHHHHHHHHTT----------SSEEEEEE--------
T ss_pred cCcCHHHHHHHHHHHHHcCCCEEEECCCCcc-cccCCHHHHHHHHHHHHHHccC----------ceEEEecC--------
Confidence 4689999999999999999999888764321 1111123344555555443221 12223321
Q ss_pred HhhcCCCCCHHHHHHHHHHHHHhCCCcceEeeceEEecCCCHHHHHHHHHHHHHcCCcEEeeccCcCCCCCCCcccccCC
Q 019890 235 SAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMPVSEYIT 314 (334)
Q Consensus 235 ~~Vr~r~~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGlGETdEE~~etl~~Lre~gvd~vtigqYlrP~~~h~~v~~yv~ 314 (334)
...+.++.++..+.+++.--+|+.+-.-.. +.=|++++.+.++++.+. ..++|.-|-.|..... .++
T Consensus 78 -----~~~st~~~i~~a~~a~~~Gad~v~v~~P~~--~~~s~~~l~~y~~~ia~~--~~~pi~iYn~P~~tg~----~ls 144 (289)
T PF00701_consen 78 -----GANSTEEAIELARHAQDAGADAVLVIPPYY--FKPSQEELIDYFRAIADA--TDLPIIIYNNPARTGN----DLS 144 (289)
T ss_dssp -----ESSSHHHHHHHHHHHHHTT-SEEEEEESTS--SSCCHHHHHHHHHHHHHH--SSSEEEEEEBHHHHSS----TSH
T ss_pred -----cchhHHHHHHHHHHHhhcCceEEEEecccc--ccchhhHHHHHHHHHHhh--cCCCEEEEECCCcccc----CCC
Confidence 135788889999999886323222222211 156899999999999966 3456666777732211 345
Q ss_pred HHHHHHHH
Q 019890 315 PEAFERYR 322 (334)
Q Consensus 315 P~~f~~~~ 322 (334)
|+.+.++.
T Consensus 145 ~~~l~~L~ 152 (289)
T PF00701_consen 145 PETLARLA 152 (289)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 55554444
No 417
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=35.89 E-value=1.8e+02 Score=28.16 Aligned_cols=52 Identities=15% Similarity=0.142 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHhCCCcceEeeceEEecCCCHHHHHHHHHHHHHcCCcEEeecc
Q 019890 245 KQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQ 298 (334)
Q Consensus 245 e~sL~vL~~ak~~~p~Gl~tkTgiMVGlGETdEE~~etl~~Lre~gvd~vtigq 298 (334)
+...++++.+++..+--+.+|.. +|.-++..+..+.++.|.+.|+|.+++..
T Consensus 117 ~~~~ei~~~vr~~~~~pv~vKir--~g~~~~~~~~~~~a~~l~~~G~d~i~vh~ 168 (319)
T TIGR00737 117 DLIGKIVKAVVDAVDIPVTVKIR--IGWDDAHINAVEAARIAEDAGAQAVTLHG 168 (319)
T ss_pred HHHHHHHHHHHhhcCCCEEEEEE--cccCCCcchHHHHHHHHHHhCCCEEEEEc
Confidence 45567777777654211333433 46656666788889999999999999853
No 418
>PRK09057 coproporphyrinogen III oxidase; Provisional
Probab=35.89 E-value=2.1e+02 Score=28.46 Aligned_cols=16 Identities=13% Similarity=0.152 Sum_probs=11.5
Q ss_pred HHHHHHHHCCCcEEEE
Q 019890 164 NVAEAIASWGLDYVVI 179 (334)
Q Consensus 164 ~~A~av~~~GlkeVVL 179 (334)
+..+.+++.|+..|.|
T Consensus 105 e~L~~l~~~Gvnrisl 120 (380)
T PRK09057 105 GRFRGYRAAGVNRVSL 120 (380)
T ss_pred HHHHHHHHcCCCEEEE
Confidence 4455667889988766
No 419
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=35.85 E-value=3.7e+02 Score=25.09 Aligned_cols=50 Identities=12% Similarity=0.099 Sum_probs=34.4
Q ss_pred CHHHHHHHHHHHHHhCCCcceEeeceEEecCCCHHHHHHHHHHHHHcCCcEEeecc
Q 019890 243 NFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQ 298 (334)
Q Consensus 243 tye~sL~vL~~ak~~~p~Gl~tkTgiMVGlGETdEE~~etl~~Lre~gvd~vtigq 298 (334)
+.+...++++.+++..-. +.+|... |-+ ++..+..+.|.+.|+|.+|+-+
T Consensus 124 ~p~~l~eiv~avr~~~~p-VsvKir~----g~~-~~~~~la~~l~~aG~d~ihv~~ 173 (233)
T cd02911 124 DPERLSEFIKALKETGVP-VSVKIRA----GVD-VDDEELARLIEKAGADIIHVDA 173 (233)
T ss_pred CHHHHHHHHHHHHhcCCC-EEEEEcC----CcC-cCHHHHHHHHHHhCCCEEEECc
Confidence 356677888888774111 3334332 445 7788889999999999999854
No 420
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=35.74 E-value=2.9e+02 Score=26.18 Aligned_cols=54 Identities=22% Similarity=0.298 Sum_probs=36.9
Q ss_pred CHHHHHHHHHHHHHhCCCcceEeeceEEec-CCCHHHHHHHHHHHHHcCCcEEeeccCcCCC
Q 019890 243 NFKQSLDVLMMAKDYVPAGTLTKTSIMLGC-GETPDQVVSTMEKVRAAGVDVMTFGQYMRPS 303 (334)
Q Consensus 243 tye~sL~vL~~ak~~~p~Gl~tkTgiMVGl-GETdEE~~etl~~Lre~gvd~vtigqYlrP~ 303 (334)
.-+.+++.++.+++. .+ .-+++-+ |.+.+++.+..+.+++.|+|.+-++ +.-|.
T Consensus 73 g~~~~~~~~~~~~~~-~~-----~p~ivsi~g~~~~~~~~~a~~~~~~G~d~iElN-~~cP~ 127 (296)
T cd04740 73 GVEAFLEELLPWLRE-FG-----TPVIASIAGSTVEEFVEVAEKLADAGADAIELN-ISCPN 127 (296)
T ss_pred CHHHHHHHHHHHhhc-CC-----CcEEEEEecCCHHHHHHHHHHHHHcCCCEEEEE-CCCCC
Confidence 345566666655442 11 2355666 8899999999999999999999887 43343
No 421
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=35.69 E-value=69 Score=33.53 Aligned_cols=119 Identities=22% Similarity=0.307 Sum_probs=66.6
Q ss_pred hHHHHHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhCCCCcee---ee-------ecccccccccc-----
Q 019890 161 EPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIE---AL-------VAKSGLNVFAH----- 225 (334)
Q Consensus 161 Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~P~i~vE---~L-------l~~ag~dv~~H----- 225 (334)
+-.+.++++.+.|++.|+|+.-+. ......+.|++|++..|++.|= +. +.++|.|.+--
T Consensus 241 ~~~~~~~~l~~ag~d~i~id~a~G------~s~~~~~~i~~ik~~~~~~~v~aG~V~t~~~a~~~~~aGad~I~vg~g~G 314 (495)
T PTZ00314 241 EDIERAAALIEAGVDVLVVDSSQG------NSIYQIDMIKKLKSNYPHVDIIAGNVVTADQAKNLIDAGADGLRIGMGSG 314 (495)
T ss_pred HHHHHHHHHHHCCCCEEEEecCCC------CchHHHHHHHHHHhhCCCceEEECCcCCHHHHHHHHHcCCCEEEECCcCC
Confidence 337888999999999999976431 1223468899999988865431 11 77888887631
Q ss_pred chhhHHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCcceEeeceEE--ecCCCHHHHHHHHHHHHHcCCcEEeeccCc
Q 019890 226 NIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIML--GCGETPDQVVSTMEKVRAAGVDVMTFGQYM 300 (334)
Q Consensus 226 nlETv~~l~~~Vr~r~~tye~sL~vL~~ak~~~p~Gl~tkTgiMV--GlGETdEE~~etl~~Lre~gvd~vtigqYl 300 (334)
-+.+.+.+.. +- .....-..++.+.+++. |+. +|. |. -|..|+...+ .+|.|.|-+|..+
T Consensus 315 s~~~t~~~~~-~g--~p~~~ai~~~~~~~~~~---~v~----vIadGGi-~~~~di~kAl----a~GA~~Vm~G~~~ 376 (495)
T PTZ00314 315 SICITQEVCA-VG--RPQASAVYHVARYARER---GVP----CIADGGI-KNSGDICKAL----ALGADCVMLGSLL 376 (495)
T ss_pred cccccchhcc-CC--CChHHHHHHHHHHHhhc---CCe----EEecCCC-CCHHHHHHHH----HcCCCEEEECchh
Confidence 1112111110 00 01222223333444432 232 333 22 3556666554 3889999888765
No 422
>PRK12928 lipoyl synthase; Provisional
Probab=35.49 E-value=1e+02 Score=29.88 Aligned_cols=79 Identities=15% Similarity=0.082 Sum_probs=49.2
Q ss_pred CHHHHHHHHHHHHHhCCCcceEeeceEEec-CCCHHHHHHHHHHHHHcCCcEEeeccCcCCCCCCCc-ccccCCHHHHHH
Q 019890 243 NFKQSLDVLMMAKDYVPAGTLTKTSIMLGC-GETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMP-VSEYITPEAFER 320 (334)
Q Consensus 243 tye~sL~vL~~ak~~~p~Gl~tkTgiMVGl-GETdEE~~etl~~Lre~gvd~vtigqYlrP~~~h~~-v~~yv~P~~f~~ 320 (334)
..+.+.++|+.+++..|. +.+.. ++-.+ |. ..+.|..|.+.|++++..+ +..+.+.++ +.+-.+.+++.+
T Consensus 121 g~~~~~ell~~Ik~~~p~-~~I~~-ltp~~~~~----~~e~L~~l~~Ag~~i~~hn--lEt~~~vl~~m~r~~t~e~~le 192 (290)
T PRK12928 121 GAAHFVATIAAIRARNPG-TGIEV-LTPDFWGG----QRERLATVLAAKPDVFNHN--LETVPRLQKAVRRGADYQRSLD 192 (290)
T ss_pred CHHHHHHHHHHHHhcCCC-CEEEE-eccccccC----CHHHHHHHHHcCchhhccc--CcCcHHHHHHhCCCCCHHHHHH
Confidence 456678888888888776 65543 22244 32 4456888888998877765 444433332 234467777666
Q ss_pred HHHHHHHhh
Q 019890 321 YRALGMEMV 329 (334)
Q Consensus 321 ~~~~a~~~~ 329 (334)
.-+.|.+++
T Consensus 193 ~l~~ak~~g 201 (290)
T PRK12928 193 LLARAKELA 201 (290)
T ss_pred HHHHHHHhC
Confidence 666666654
No 423
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=35.46 E-value=76 Score=29.26 Aligned_cols=47 Identities=23% Similarity=0.433 Sum_probs=35.3
Q ss_pred CCCchhHHHHHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhCCCCce
Q 019890 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLI 211 (334)
Q Consensus 156 ~ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~P~i~v 211 (334)
..++++..++++++.+.|++-+=+|-.+ ++ ..++|+.+++..|++.|
T Consensus 16 ~~~~~~a~~~~~al~~gGi~~iEiT~~t----~~-----a~~~I~~l~~~~p~~~v 62 (196)
T PF01081_consen 16 GDDPEDAVPIAEALIEGGIRAIEITLRT----PN-----ALEAIEALRKEFPDLLV 62 (196)
T ss_dssp TSSGGGHHHHHHHHHHTT--EEEEETTS----TT-----HHHHHHHHHHHHTTSEE
T ss_pred cCCHHHHHHHHHHHHHCCCCEEEEecCC----cc-----HHHHHHHHHHHCCCCee
Confidence 3578999999999999999988887643 22 35788889888898654
No 424
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=35.39 E-value=75 Score=33.16 Aligned_cols=118 Identities=19% Similarity=0.315 Sum_probs=70.9
Q ss_pred hhHHHHHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhCCCCcee---ee-------eccccccccc-----
Q 019890 160 DEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIE---AL-------VAKSGLNVFA----- 224 (334)
Q Consensus 160 ~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~P~i~vE---~L-------l~~ag~dv~~----- 224 (334)
++..+.++++.+.|++-|+|= ..++-...+.++|++||+.+|++.|= +. +.++|.|.+.
T Consensus 224 ~~~~~ra~~Lv~aGVd~i~~D------~a~g~~~~~~~~i~~i~~~~~~~~vi~g~~~t~~~~~~l~~~G~d~i~vg~g~ 297 (475)
T TIGR01303 224 GDVGGKAKALLDAGVDVLVID------TAHGHQVKMISAIKAVRALDLGVPIVAGNVVSAEGVRDLLEAGANIIKVGVGP 297 (475)
T ss_pred ccHHHHHHHHHHhCCCEEEEe------CCCCCcHHHHHHHHHHHHHCCCCeEEEeccCCHHHHHHHHHhCCCEEEECCcC
Confidence 577788899999999999983 34444578899999999988875321 11 7788888876
Q ss_pred ---cchhhHHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCcce-EeeceEEecCCCHHHHHHHHHHHHHcCCcEEeeccCc
Q 019890 225 ---HNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTL-TKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYM 300 (334)
Q Consensus 225 ---HnlETv~~l~~~Vr~r~~tye~sL~vL~~ak~~~p~Gl~-tkTgiMVGlGETdEE~~etl~~Lre~gvd~vtigqYl 300 (334)
++ -+.+--+. .....--+++.+.+++. |+. +..|.| -+..|+...|. +|-+.|.+|-++
T Consensus 298 Gs~~t----tr~~~~~g--~~~~~a~~~~~~~~~~~---~~~viadGgi----~~~~di~kala----~GA~~vm~g~~~ 360 (475)
T TIGR01303 298 GAMCT----TRMMTGVG--RPQFSAVLECAAEARKL---GGHVWADGGV----RHPRDVALALA----AGASNVMVGSWF 360 (475)
T ss_pred Ccccc----CccccCCC--CchHHHHHHHHHHHHHc---CCcEEEeCCC----CCHHHHHHHHH----cCCCEEeechhh
Confidence 33 12222222 12333344555555553 222 222222 34455554443 677777777665
No 425
>COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]
Probab=35.05 E-value=1.4e+02 Score=29.67 Aligned_cols=120 Identities=13% Similarity=0.164 Sum_probs=0.0
Q ss_pred CchhHHHHHHHHHHCCCcEEEEeeecCCCC-CCchHHHHHHHHHHHHhhCCCCceeeeeccccccccccchhhHHHHHHh
Q 019890 158 DPDEPTNVAEAIASWGLDYVVITSVDRDDL-ADQGSGHFAQTVRKLKELKPNMLIEALVAKSGLNVFAHNIETVEELQSA 236 (334)
Q Consensus 158 d~~Ep~~~A~av~~~GlkeVVLTSv~rdDl-~d~Ga~~fa~lIr~Ik~~~P~i~vE~Ll~~ag~dv~~HnlETv~~l~~~ 236 (334)
+.+++.++|+++.+.|++-|++|--..+-. -|.... .-.++...-++ +|+-+..-.++.+.++|++
T Consensus 171 ~~~di~~iA~~~~~~g~Dgl~~~NT~~~~~~id~~~~-----~~~~~~~~GGL--------SG~~ikp~al~~v~~l~~~ 237 (310)
T COG0167 171 NITDIDEIAKAAEEAGADGLIAINTTKSGMKIDLETK-----KPVLANETGGL--------SGPPLKPIALRVVAELYKR 237 (310)
T ss_pred CHHHHHHHHHHHHHcCCcEEEEEeecccccccccccc-----ccccCcCCCCc--------CcccchHHHHHHHHHHHHh
Q ss_pred hcC--------CCCCHHHHHHHHHHHHHhCCCcceEeeceEEe-cCCCHHHHHHHHHHHHHcCCcEE
Q 019890 237 VRD--------HRANFKQSLDVLMMAKDYVPAGTLTKTSIMLG-CGETPDQVVSTMEKVRAAGVDVM 294 (334)
Q Consensus 237 Vr~--------r~~tye~sL~vL~~ak~~~p~Gl~tkTgiMVG-lGETdEE~~etl~~Lre~gvd~v 294 (334)
+.+ -=.++++-++.|..=..+ +.+.|.+|.. .+=-.+=...+.+.|++.|++.+
T Consensus 238 ~~~~ipIIGvGGI~s~~DA~E~i~aGA~~----vQv~Tal~~~Gp~i~~~I~~~l~~~l~~~g~~si 300 (310)
T COG0167 238 LGGDIPIIGVGGIETGEDALEFILAGASA----VQVGTALIYKGPGIVKEIIKGLARWLEEKGFESI 300 (310)
T ss_pred cCCCCcEEEecCcCcHHHHHHHHHcCCch----heeeeeeeeeCchHHHHHHHHHHHHHHHcCCCCH
No 426
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=34.94 E-value=1.2e+02 Score=27.27 Aligned_cols=54 Identities=30% Similarity=0.492 Sum_probs=37.2
Q ss_pred HHHHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhCCCCceeee----------eccccccccc
Q 019890 163 TNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEAL----------VAKSGLNVFA 224 (334)
Q Consensus 163 ~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~P~i~vE~L----------l~~ag~dv~~ 224 (334)
.++++.+.+.|++.|.|=-. ..+.+.++++.|+...|.+.+|+- +.+.|+|++.
T Consensus 90 ~ee~~ea~~~g~d~I~lD~~--------~~~~~~~~v~~l~~~~~~v~ie~SGGI~~~ni~~ya~~gvD~is 153 (169)
T PF01729_consen 90 LEEAEEALEAGADIIMLDNM--------SPEDLKEAVEELRELNPRVKIEASGGITLENIAEYAKTGVDVIS 153 (169)
T ss_dssp HHHHHHHHHTT-SEEEEES---------CHHHHHHHHHHHHHHTTTSEEEEESSSSTTTHHHHHHTT-SEEE
T ss_pred HHHHHHHHHhCCCEEEecCc--------CHHHHHHHHHHHhhcCCcEEEEEECCCCHHHHHHHHhcCCCEEE
Confidence 34566667789998887322 346789999999888888888775 5667777654
No 427
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=34.92 E-value=83 Score=30.47 Aligned_cols=50 Identities=24% Similarity=0.437 Sum_probs=29.9
Q ss_pred HHHHHHHCCCcEEEE--------eeecCC---CCCCchHHHHHHHHHHHHhhCCCCceeee
Q 019890 165 VAEAIASWGLDYVVI--------TSVDRD---DLADQGSGHFAQTVRKLKELKPNMLIEAL 214 (334)
Q Consensus 165 ~A~av~~~GlkeVVL--------TSv~rd---Dl~d~Ga~~fa~lIr~Ik~~~P~i~vE~L 214 (334)
.++++++-|+.++.| |.+||- -+.+.|.....-+-+.|++.+|.+.|..+
T Consensus 45 ~veALaRsGig~itlID~D~v~vTN~NRQi~A~~~~iGk~Kv~vm~eri~~InP~c~V~~~ 105 (263)
T COG1179 45 AVEALARSGIGRITLIDMDDVCVTNTNRQIHALLGDIGKPKVEVMKERIKQINPECEVTAI 105 (263)
T ss_pred HHHHHHHcCCCeEEEEecccccccccchhhHhhhhhcccHHHHHHHHHHHhhCCCceEeeh
Confidence 467888999877766 334431 11233433333444567777899877766
No 428
>PRK09249 coproporphyrinogen III oxidase; Provisional
Probab=34.78 E-value=1.8e+02 Score=29.77 Aligned_cols=64 Identities=13% Similarity=0.184 Sum_probs=40.2
Q ss_pred CCCCHHHHHHHHHHHHHhCCCcceEeeceE---Ee------cC----CCHHH----HHHHHHHHHHcCCcEEeeccCcCC
Q 019890 240 HRANFKQSLDVLMMAKDYVPAGTLTKTSIM---LG------CG----ETPDQ----VVSTMEKVRAAGVDVMTFGQYMRP 302 (334)
Q Consensus 240 r~~tye~sL~vL~~ak~~~p~Gl~tkTgiM---VG------lG----ETdEE----~~etl~~Lre~gvd~vtigqYlrP 302 (334)
++.+.++..+.++.+.+..|+.+.+. .++ .+ .+ -++++ +....+.|.+.|+....+..|.+|
T Consensus 213 Pgqt~e~~~~~l~~~~~l~~~~i~~y-~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~Gy~~ye~s~far~ 291 (453)
T PRK09249 213 PKQTPESFARTLEKVLELRPDRLAVF-NYAHVPWLFKAQRKIDEADLPSPEEKLAILQQTIETLTEAGYQYIGMDHFALP 291 (453)
T ss_pred CCCCHHHHHHHHHHHHhcCCCEEEEc-cCccchhhhhHhcCCCcccCCCHHHHHHHHHHHHHHHHHCCCEEEeccceeCC
Confidence 46777777777888777766532221 111 00 01 13333 445567789999999999999988
Q ss_pred CC
Q 019890 303 SK 304 (334)
Q Consensus 303 ~~ 304 (334)
..
T Consensus 292 ~~ 293 (453)
T PRK09249 292 DD 293 (453)
T ss_pred Cc
Confidence 64
No 429
>PRK08931 5'-methylthioadenosine phosphorylase; Provisional
Probab=34.78 E-value=1.5e+02 Score=28.95 Aligned_cols=49 Identities=20% Similarity=0.214 Sum_probs=31.7
Q ss_pred CHHHHHH--HHHHHHHhCCCcceEe-eceEEec-C---CCHHHHHHHHHHHHHcCCcEEeecc
Q 019890 243 NFKQSLD--VLMMAKDYVPAGTLTK-TSIMLGC-G---ETPDQVVSTMEKVRAAGVDVMTFGQ 298 (334)
Q Consensus 243 tye~sL~--vL~~ak~~~p~Gl~tk-TgiMVGl-G---ETdEE~~etl~~Lre~gvd~vtigq 298 (334)
-|...|. +++.+++. |+.+. .|+.+++ | ||..|+ +.++.+|.|.|+...
T Consensus 132 ~y~~~Lr~~l~~~a~~~---~~~~~~~GvYv~~~GPrfET~AEi----r~~r~~GaDvVGMSt 187 (289)
T PRK08931 132 PVCPRLGDRLAAAARAE---GITVHRGGTYLCMEGPQFSTLAES----KLYRSWGCDVIGMTN 187 (289)
T ss_pred ccCHHHHHHHHHHHHHc---CCeEecceEEEEeeCCCCCCHHHH----HHHHHcCCCEeccCc
Confidence 3544442 33444553 46554 5688888 7 888875 578899999887754
No 430
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=34.68 E-value=3.1e+02 Score=24.88 Aligned_cols=45 Identities=20% Similarity=0.303 Sum_probs=29.4
Q ss_pred chhHHHHHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhC
Q 019890 159 PDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELK 206 (334)
Q Consensus 159 ~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~ 206 (334)
..+|.+.|+...+.|++++.+ +|.+.... |...-.++|++|.+..
T Consensus 27 ~~dp~~~a~~~~~~g~~~l~v--~dl~~~~~-g~~~~~~~i~~i~~~~ 71 (230)
T TIGR00007 27 GDDPVEAAKKWEEEGAERIHV--VDLDGAKE-GGPVNLPVIKKIVRET 71 (230)
T ss_pred cCCHHHHHHHHHHcCCCEEEE--EeCCcccc-CCCCcHHHHHHHHHhc
Confidence 358899999999999999988 44332322 2222346777776653
No 431
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=34.35 E-value=4.1e+02 Score=25.23 Aligned_cols=54 Identities=9% Similarity=0.067 Sum_probs=36.5
Q ss_pred CCchhHHHHHHHHHHCCCcEEEEeeecCC---C-CCCchHHHHHHHHHHHHhhCCCCc
Q 019890 157 PDPDEPTNVAEAIASWGLDYVVITSVDRD---D-LADQGSGHFAQTVRKLKELKPNML 210 (334)
Q Consensus 157 ld~~Ep~~~A~av~~~GlkeVVLTSv~rd---D-l~d~Ga~~fa~lIr~Ik~~~P~i~ 210 (334)
.+..++......+.+.|++.|++.++|.. | -+.+...+-.++|+.|++.++++.
T Consensus 70 ~n~~~l~~~L~~~~~~Gi~nvL~l~GD~~~~~~~~~~~~f~~a~~Li~~i~~~~~~f~ 127 (272)
T TIGR00676 70 ATREEIREILREYRELGIRHILALRGDPPKGEGTPTPGGFNYASELVEFIRNEFGDFD 127 (272)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCCCCCCCCCCHHHHHHHHHHhcCCee
Confidence 56788899999999999999986665532 1 111223345678888887666543
No 432
>PRK11320 prpB 2-methylisocitrate lyase; Provisional
Probab=34.30 E-value=1.6e+02 Score=28.80 Aligned_cols=120 Identities=19% Similarity=0.178 Sum_probs=61.3
Q ss_pred CCCchhHHHHHHHHHHC-CCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhCCCCceeee-ecc-ccccccccchhhHHH
Q 019890 156 PPDPDEPTNVAEAIASW-GLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEAL-VAK-SGLNVFAHNIETVEE 232 (334)
Q Consensus 156 ~ld~~Ep~~~A~av~~~-GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~P~i~vE~L-l~~-ag~dv~~HnlETv~~ 232 (334)
.++.+|....++.+.+. .+- ..+|-| -.-++...+.++|+++-+. + +-.+ +-| .++..+.|.-.
T Consensus 60 ~l~~~e~~~~~~~I~~~~~iP----viaD~d-~GyG~~~~v~r~V~~~~~a--G--aagi~IEDq~~pK~cg~~~~---- 126 (292)
T PRK11320 60 ITTLDDVLIDVRRITDACDLP----LLVDID-TGFGGAFNIARTVKSMIKA--G--AAAVHIEDQVGAKRCGHRPN---- 126 (292)
T ss_pred CCCHHHHHHHHHHHHhccCCC----EEEECC-CCCCCHHHHHHHHHHHHHc--C--CeEEEEecCCCccccCCCCC----
Confidence 36777888777777653 221 234432 2223455666666665432 1 1111 111 13444444310
Q ss_pred HHHhhcCCCCCHHHHHHHHHHHHHhC--CCcceE--eeceEEecCCCHHHHHHHHHHHHHcCCcEEeec
Q 019890 233 LQSAVRDHRANFKQSLDVLMMAKDYV--PAGTLT--KTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFG 297 (334)
Q Consensus 233 l~~~Vr~r~~tye~sL~vL~~ak~~~--p~Gl~t--kTgiMVGlGETdEE~~etl~~Lre~gvd~vtig 297 (334)
+. -.+.++..+.|+.+++.. ++ +.+ +|+-....| .+|.++=.+.-.++|.|.|.+-
T Consensus 127 --~~----lv~~ee~~~kI~Aa~~a~~~~d-~~IiARTDa~~~~g--~deAI~Ra~aY~eAGAD~ifi~ 186 (292)
T PRK11320 127 --KE----IVSQEEMVDRIKAAVDARTDPD-FVIMARTDALAVEG--LDAAIERAQAYVEAGADMIFPE 186 (292)
T ss_pred --Cc----ccCHHHHHHHHHHHHHhccCCC-eEEEEecCcccccC--HHHHHHHHHHHHHcCCCEEEec
Confidence 00 123444455555555432 33 433 777764433 6777777777888899988873
No 433
>cd00953 KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolases found in archaea. This subfamily of enzymes is adapted for high thermostability and shows specificity for non-phosphorylated substrates. The enzyme catalyses the reversible aldol cleavage of 2-keto-3-dexoygluconate to pyruvate and glyceraldehyde, the third step of a modified non-phosphorylated Entner-Doudoroff pathway of glucose oxidation. KDG aldolase shows no significant sequence similarity to microbial 2-keto-3-deoxyphosphogluconate (KDPG) aldolases, and the enzyme shows no activity with glyceraldehyde 3-phosphate as substrate. The enzyme is a tetramer and a member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=34.24 E-value=1.4e+02 Score=28.38 Aligned_cols=28 Identities=25% Similarity=0.394 Sum_probs=17.5
Q ss_pred CCCCchhHHHHHHHHHHCCCcEEEEeee
Q 019890 155 PPPDPDEPTNVAEAIASWGLDYVVITSV 182 (334)
Q Consensus 155 ~~ld~~Ep~~~A~av~~~GlkeVVLTSv 182 (334)
..+|.+...+.++.+.+.|++-|++.|.
T Consensus 15 g~iD~~~~~~li~~l~~~Gv~Gl~~~Gs 42 (279)
T cd00953 15 NKIDKEKFKKHCENLISKGIDYVFVAGT 42 (279)
T ss_pred CCcCHHHHHHHHHHHHHcCCcEEEEccc
Confidence 3566666666666666666666666554
No 434
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=34.18 E-value=3.1e+02 Score=23.65 Aligned_cols=52 Identities=8% Similarity=0.048 Sum_probs=34.9
Q ss_pred CCCHHHHHHHHHHHHHhCCCcceEeeceEEecC--CCHHHHHHHHHHHHHcCCcEEee
Q 019890 241 RANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCG--ETPDQVVSTMEKVRAAGVDVMTF 296 (334)
Q Consensus 241 ~~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGlG--ETdEE~~etl~~Lre~gvd~vti 296 (334)
+.++....++++.+++. |+. ..-+|+|=+ -..+++.+..+.|+++|||.++-
T Consensus 61 t~~~~~~~~~~~~l~~~---gl~-~v~vivGG~~~i~~~d~~~~~~~L~~~Gv~~vf~ 114 (128)
T cd02072 61 GHGEIDCKGLREKCDEA---GLK-DILLYVGGNLVVGKQDFEDVEKRFKEMGFDRVFA 114 (128)
T ss_pred cCCHHHHHHHHHHHHHC---CCC-CCeEEEECCCCCChhhhHHHHHHHHHcCCCEEEC
Confidence 45666667777777775 342 244666653 56677778888899999987643
No 435
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=34.10 E-value=1.3e+02 Score=28.57 Aligned_cols=49 Identities=22% Similarity=0.366 Sum_probs=30.9
Q ss_pred CCchhHHHHHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhCCCC
Q 019890 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNM 209 (334)
Q Consensus 157 ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~P~i 209 (334)
.+++...+.++++.+.|.+.|.|- | ...-.-...+.++++.+++..|++
T Consensus 148 ~~~~~~~~~~~~~~~~g~~~i~l~--D--T~G~~~P~~v~~lv~~l~~~~~~~ 196 (273)
T cd07941 148 ANPEYALATLKAAAEAGADWLVLC--D--TNGGTLPHEIAEIVKEVRERLPGV 196 (273)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEEe--c--CCCCCCHHHHHHHHHHHHHhCCCC
Confidence 356777777777778888877662 1 111122456777888887766654
No 436
>PTZ00413 lipoate synthase; Provisional
Probab=34.04 E-value=5.4e+02 Score=26.52 Aligned_cols=153 Identities=16% Similarity=0.128 Sum_probs=86.2
Q ss_pred CCCCCcccCCCCCCCCCC---chhHHHHHHHHHHC--CCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhCCCC---cee
Q 019890 141 RGCRFCNVKTSRAPPPPD---PDEPTNVAEAIASW--GLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNM---LIE 212 (334)
Q Consensus 141 r~C~FC~V~~~r~p~~ld---~~Ep~~~A~av~~~--GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~P~i---~vE 212 (334)
.+-+||.|.++++. .++ .+.+.+..++|++. ++.--|+++ |+. | -.+.++.|++.-|+. .+|
T Consensus 192 ~Gl~~~VVTSv~RD-DL~D~ga~~~a~~I~~Ir~~~p~~~Ievlig----Df~--g---~~e~l~~L~eAG~dvynHNLE 261 (398)
T PTZ00413 192 MGVDYIVMTMVDRD-DLPDGGASHVARCVELIKESNPELLLEALVG----DFH--G---DLKSVEKLANSPLSVYAHNIE 261 (398)
T ss_pred cCCCEEEEEEEcCC-CCChhhHHHHHHHHHHHHccCCCCeEEEcCC----ccc--c---CHHHHHHHHhcCCCEEecccc
Confidence 44568988877532 233 34555555666653 344334433 221 1 125667777655542 223
Q ss_pred eeecccccccc--ccc----hhhHHHHHH----hhc-------CCCCCHHHHHHHHHHHHHhCCCcceE--------eec
Q 019890 213 ALVAKSGLNVF--AHN----IETVEELQS----AVR-------DHRANFKQSLDVLMMAKDYVPAGTLT--------KTS 267 (334)
Q Consensus 213 ~Ll~~ag~dv~--~Hn----lETv~~l~~----~Vr-------~r~~tye~sL~vL~~ak~~~p~Gl~t--------kTg 267 (334)
.. ..--+.|. .|+ +++++..-. .|. .-+-+.++.+++++.+++...+ +.+ +..
T Consensus 262 Tv-~rLyp~VRt~~atYe~sLe~Lr~AKe~f~~gi~tcSGiIVGLGET~eEvie~m~dLrelGVD-ivtIGQYL~Ps~~h 339 (398)
T PTZ00413 262 CV-ERITPYVRDRRASYRQSLKVLEHVKEFTNGAMLTKSSIMLGLGETEEEVRQTLRDLRTAGVS-AVTLGQYLQPTKTR 339 (398)
T ss_pred cC-HhHHHHHccCcCCHHHHHHHHHHHHHHhcCCceEeeeeEecCCCCHHHHHHHHHHHHHcCCc-EEeeccccCCCccc
Confidence 22 11112333 134 344332211 121 1467999999999999997443 211 111
Q ss_pred eEEecCCCHHHHHHHHHHHHHcCCcEEeeccCcCCCCC
Q 019890 268 IMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKR 305 (334)
Q Consensus 268 iMVGlGETdEE~~etl~~Lre~gvd~vtigqYlrP~~~ 305 (334)
+=|====+.|+|...-+.-.++||..|--|++.|-+-+
T Consensus 340 ~~V~~yv~P~~F~~~~~~a~~~Gf~~v~sgPlVRSSY~ 377 (398)
T PTZ00413 340 LKVSRYAHPKEFEMWEEEAMKMGFLYCASGPLVRSSYR 377 (398)
T ss_pred CCceeccCHHHHHHHHHHHHHcCCceEEecCccccchh
Confidence 11111238899999999999999999999998887644
No 437
>cd06167 LabA_like LabA_like proteins. A well conserved group of bacterial proteins with no defined function. LabA, a member from Synechococcus elongatus PCC 7942, has been shown to play a role in cyanobacterial circadian timing. It is required for negative feedback regulation of the autokinase/autophosphatase KaiC, a central component of the circadian clock system. In particular, LabA seems necessary for KaiC-dependent repression of gene expression.
Probab=33.95 E-value=1.5e+02 Score=24.75 Aligned_cols=49 Identities=22% Similarity=0.258 Sum_probs=36.1
Q ss_pred CCCCchhHHHHHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhCCCCceeee
Q 019890 155 PPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEAL 214 (334)
Q Consensus 155 ~~ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~P~i~vE~L 214 (334)
...|..=.....+.+...++..+||.|+|. .|+.+++.+++. +..|.++
T Consensus 81 ~~~D~~l~~d~~~~~~~~~~d~ivLvSgD~---------Df~~~i~~lr~~--G~~V~v~ 129 (149)
T cd06167 81 KGVDVALAIDALELAYKRRIDTIVLVSGDS---------DFVPLVERLREL--GKRVIVV 129 (149)
T ss_pred cCccHHHHHHHHHHhhhcCCCEEEEEECCc---------cHHHHHHHHHHc--CCEEEEE
Confidence 346666556666666677899999999875 378899999876 5666655
No 438
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=33.88 E-value=99 Score=31.80 Aligned_cols=57 Identities=25% Similarity=0.305 Sum_probs=41.7
Q ss_pred hHHHHHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhCCCCceee---e-------ecccccccc
Q 019890 161 EPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEA---L-------VAKSGLNVF 223 (334)
Q Consensus 161 Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~P~i~vE~---L-------l~~ag~dv~ 223 (334)
+-.+.++++.+.|++-|+|.+-+. ....+.+.|++|++.+|++.|=+ . +.++|.|.+
T Consensus 224 ~~~~r~~~L~~aG~d~I~vd~a~g------~~~~~~~~i~~i~~~~~~~~vi~G~v~t~~~a~~l~~aGad~i 290 (450)
T TIGR01302 224 FDKERAEALVKAGVDVIVIDSSHG------HSIYVIDSIKEIKKTYPDLDIIAGNVATAEQAKALIDAGADGL 290 (450)
T ss_pred hHHHHHHHHHHhCCCEEEEECCCC------cHhHHHHHHHHHHHhCCCCCEEEEeCCCHHHHHHHHHhCCCEE
Confidence 445677788999999999966442 34568899999999888754322 2 777888876
No 439
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=33.78 E-value=3.8e+02 Score=26.52 Aligned_cols=64 Identities=16% Similarity=0.119 Sum_probs=37.9
Q ss_pred CCCCHHHHHHHHHHHHHhCCCcceEeeceEEecC-------------C-CH----HHHHHHHHHHHHcCCcEEeeccCcC
Q 019890 240 HRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCG-------------E-TP----DQVVSTMEKVRAAGVDVMTFGQYMR 301 (334)
Q Consensus 240 r~~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGlG-------------E-Td----EE~~etl~~Lre~gvd~vtigqYlr 301 (334)
++.+.+++.+.++.+.+..|+.+.+ ..+++-=| . ++ +-+....+.|++.|+....+..|.+
T Consensus 170 Pgqt~~~~~~tl~~~~~l~~~~i~~-y~l~~~~gT~l~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~G~~~ye~s~fa~ 248 (375)
T PRK05628 170 PGESDDDWRASLDAALEAGVDHVSA-YALIVEDGTALARRVRRGELPAPDDDVLADRYELADARLSAAGFDWYEVSNWAR 248 (375)
T ss_pred CCCCHHHHHHHHHHHHhcCCCEEEe-eeeecCCCChHHHHhhcCCCCCCChHHHHHHHHHHHHHHHHcCCCeeeeccccC
Confidence 4667777777777777776663222 22332001 0 11 2233444667888999999988888
Q ss_pred CCC
Q 019890 302 PSK 304 (334)
Q Consensus 302 P~~ 304 (334)
|..
T Consensus 249 ~~~ 251 (375)
T PRK05628 249 PGG 251 (375)
T ss_pred CCc
Confidence 763
No 440
>PRK06267 hypothetical protein; Provisional
Probab=33.73 E-value=4.8e+02 Score=25.80 Aligned_cols=116 Identities=14% Similarity=0.158 Sum_probs=68.0
Q ss_pred CCchhHHHHHHHHHHCCCcEE--EEeeecCCCCCCchHHHHHHHHHHHHhhCCC-CceeeeeccccccccccchhhHHHH
Q 019890 157 PDPDEPTNVAEAIASWGLDYV--VITSVDRDDLADQGSGHFAQTVRKLKELKPN-MLIEALVAKSGLNVFAHNIETVEEL 233 (334)
Q Consensus 157 ld~~Ep~~~A~av~~~GlkeV--VLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~P~-i~vE~Ll~~ag~dv~~HnlETv~~l 233 (334)
.+.++..+..+.+.+.|++-. +|.|. ....+++.++++.|++..++ +.+-.+.-..|-...+
T Consensus 150 ~s~ed~~~~l~~ak~aGi~v~~g~IiGl------gEt~ed~~~~l~~l~~l~~d~v~~~~L~P~pGTp~~~--------- 214 (350)
T PRK06267 150 KPLDKIKEMLLKAKDLGLKTGITIILGL------GETEDDIEKLLNLIEELDLDRITFYSLNPQKGTIFEN--------- 214 (350)
T ss_pred CCHHHHHHHHHHHHHcCCeeeeeEEEeC------CCCHHHHHHHHHHHHHcCCCEEEEEeeeECCCCcCCC---------
Confidence 567888888889999999832 33332 12356788888888887554 2222222122211111
Q ss_pred HHhhcCCCCCHHHHHHHHHHHHHhCCCcceEeeceEEecCCCHHHHHHHHHHHHHcCCcEEe----eccCc
Q 019890 234 QSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMT----FGQYM 300 (334)
Q Consensus 234 ~~~Vr~r~~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGlGETdEE~~etl~~Lre~gvd~vt----igqYl 300 (334)
. +..+-++.++++..+|-.+|+ ..+-++ ++++....+.-+.-.|++.++ +|-|+
T Consensus 215 ----~-~~~s~~e~lr~ia~~Rl~lP~-~~I~~~-------~~~~~l~~~~~~~~aGaN~i~~~p~~g~yl 272 (350)
T PRK06267 215 ----K-PSVTTLEYMNWVSSVRLNFPK-IKIITG-------TWVDKLTNIGPLIMSGSNVITKFPLFSMYG 272 (350)
T ss_pred ----C-CCCCHHHHHHHHHHHHHHCCC-CCcchh-------hHhHhcchhhHHhhcCcceeeccchhccCc
Confidence 1 246788889999999999887 444332 132222222224448889884 55555
No 441
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=33.55 E-value=93 Score=26.63 Aligned_cols=18 Identities=22% Similarity=0.239 Sum_probs=9.3
Q ss_pred EeeecCCCCCCchHHHHH
Q 019890 179 ITSVDRDDLADQGSGHFA 196 (334)
Q Consensus 179 LTSv~rdDl~d~Ga~~fa 196 (334)
+++.-.+|.-|-|+.-++
T Consensus 6 ~~a~~g~D~Hd~g~~iv~ 23 (132)
T TIGR00640 6 LVAKMGQDGHDRGAKVIA 23 (132)
T ss_pred EEEeeCCCccHHHHHHHH
Confidence 344334466676754443
No 442
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=33.45 E-value=4e+02 Score=24.75 Aligned_cols=118 Identities=14% Similarity=0.199 Sum_probs=73.7
Q ss_pred CCCchhHHHHHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhCCCCceeee-------------------ec
Q 019890 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEAL-------------------VA 216 (334)
Q Consensus 156 ~ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~P~i~vE~L-------------------l~ 216 (334)
..+.+++.+..+...+.|+.-|++-. .|....++..+. .++.+-.. ..
T Consensus 14 ~~t~~~i~~lc~~A~~~~~~avcv~p------------~~v~~a~~~l~~-~~v~v~tVigFP~G~~~~~~K~~E~~~Av 80 (211)
T TIGR00126 14 DTTEEDIITLCAQAKTYKFAAVCVNP------------SYVPLAKELLKG-TEVRICTVVGFPLGASTTDVKLYETKEAI 80 (211)
T ss_pred CCCHHHHHHHHHHHHhhCCcEEEeCH------------HHHHHHHHHcCC-CCCeEEEEeCCCCCCCcHHHHHHHHHHHH
Confidence 46788999999999999998888722 233333332211 12222111 22
Q ss_pred cccccccccchhhHHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCcceEeeceEEecC-CCHHHHHHHHHHHHHcCCcEEe
Q 019890 217 KSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCG-ETPDQVVSTMEKVRAAGVDVMT 295 (334)
Q Consensus 217 ~ag~dv~~HnlETv~~l~~~Vr~r~~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGlG-ETdEE~~etl~~Lre~gvd~vt 295 (334)
+.|.|-+.-. .. +..+. ..+|+...+-|..+++... |+.+|. |+-.| -+++++....+-..++|.|.|=
T Consensus 81 ~~GAdEiDvv----~n-~g~l~--~g~~~~v~~ei~~i~~~~~-g~~lKv--IlE~~~L~~~ei~~a~~ia~eaGADfvK 150 (211)
T TIGR00126 81 KYGADEVDMV----IN-IGALK--DGNEEVVYDDIRAVVEACA-GVLLKV--IIETGLLTDEEIRKACEICIDAGADFVK 150 (211)
T ss_pred HcCCCEEEee----cc-hHhhh--CCcHHHHHHHHHHHHHHcC-CCeEEE--EEecCCCCHHHHHHHHHHHHHhCCCEEE
Confidence 2333321111 11 12233 4778888888888888765 477777 55553 6889999999999999999885
Q ss_pred e
Q 019890 296 F 296 (334)
Q Consensus 296 i 296 (334)
.
T Consensus 151 T 151 (211)
T TIGR00126 151 T 151 (211)
T ss_pred e
Confidence 4
No 443
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=33.40 E-value=1.6e+02 Score=27.61 Aligned_cols=47 Identities=26% Similarity=0.379 Sum_probs=31.6
Q ss_pred CCchhHHHHHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhCC
Q 019890 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKP 207 (334)
Q Consensus 157 ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~P 207 (334)
.+++++.+.++.+.++|.+.|.| .| -..-.-...+.++++.|++..|
T Consensus 138 ~~~~~~~~~~~~~~~~G~d~i~l--~D--T~G~~~P~~v~~lv~~l~~~~~ 184 (263)
T cd07943 138 ASPEELAEQAKLMESYGADCVYV--TD--SAGAMLPDDVRERVRALREALD 184 (263)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEE--cC--CCCCcCHHHHHHHHHHHHHhCC
Confidence 56788888888888888887766 11 1222224567888888887654
No 444
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=33.18 E-value=1.1e+02 Score=30.11 Aligned_cols=50 Identities=22% Similarity=0.343 Sum_probs=33.9
Q ss_pred CCHHHHHHHHHHHHHhCCCcceEeec----eEE---ecCCCHHHHHHHHHHHHHcCCcEEe
Q 019890 242 ANFKQSLDVLMMAKDYVPAGTLTKTS----IML---GCGETPDQVVSTMEKVRAAGVDVMT 295 (334)
Q Consensus 242 ~tye~sL~vL~~ak~~~p~Gl~tkTg----iMV---GlGETdEE~~etl~~Lre~gvd~vt 295 (334)
...+..+++++.+|+..|+ +.+++. ++. =+|... .+.++.|+++|++.++
T Consensus 100 ~~~~~~~~i~~~Ik~~~~~-i~~~~~t~~ei~~~~~~~g~~~---~e~l~~LkeAGl~~i~ 156 (343)
T TIGR03551 100 LDGDFYLDILRAVKEEVPG-MHIHAFSPMEVYYGARNSGLSV---EEALKRLKEAGLDSMP 156 (343)
T ss_pred CCHHHHHHHHHHHHHHCCC-ceEEecCHHHHHHHHHHcCCCH---HHHHHHHHHhCccccc
Confidence 4566778889999988776 665542 111 124444 4778888899999887
No 445
>TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase. This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization.
Probab=33.03 E-value=2.2e+02 Score=27.86 Aligned_cols=52 Identities=13% Similarity=0.061 Sum_probs=33.0
Q ss_pred CHHHHHHHHHHHHHhC--CCcceE--eeceEEecCCCHHHHHHHHHHHHHcCCcEEeec
Q 019890 243 NFKQSLDVLMMAKDYV--PAGTLT--KTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFG 297 (334)
Q Consensus 243 tye~sL~vL~~ak~~~--p~Gl~t--kTgiMVGlGETdEE~~etl~~Lre~gvd~vtig 297 (334)
+.++..+.|+.+++.. ++ +.+ +|+-.. ++..+|.++-.+.-.++|.|.+.+-
T Consensus 130 ~~ee~~~kI~Aa~~A~~~~d-~~I~ARTDa~~--~~g~deaI~Ra~aY~eAGAD~ifi~ 185 (294)
T TIGR02319 130 STEEMTGKIEAAVEAREDED-FTIIARTDARE--SFGLDEAIRRSREYVAAGADCIFLE 185 (294)
T ss_pred CHHHHHHHHHHHHHhccCCC-eEEEEEecccc--cCCHHHHHHHHHHHHHhCCCEEEec
Confidence 3445555555555432 33 433 777753 3446777888888888999998884
No 446
>cd03329 MR_like_4 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 4. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=32.77 E-value=4.8e+02 Score=25.73 Aligned_cols=48 Identities=15% Similarity=0.203 Sum_probs=32.0
Q ss_pred CCchhHHHHHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhC-CCC
Q 019890 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELK-PNM 209 (334)
Q Consensus 157 ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~-P~i 209 (334)
.++++..+.|+...+.|++.+-|.....++ .+.-.+.|++|++.. |++
T Consensus 142 ~~~~~~~~~a~~~~~~Gf~~~Kik~~~~~~-----~~~di~~i~~vR~~~G~~~ 190 (368)
T cd03329 142 ESPEAYADFAEECKALGYRAIKLHPWGPGV-----VRRDLKACLAVREAVGPDM 190 (368)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCCchh-----HHHHHHHHHHHHHHhCCCC
Confidence 367888888888889999998775321110 123457888888765 444
No 447
>cd00956 Transaldolase_FSA Transaldolase-like fructose-6-phosphate aldolases (FSA) found in bacteria and archaea, which are member of the MipB/TalC subfamily of class I aldolases. FSA catalyze an aldol cleavage of fructose 6-phosphate and do not utilize fructose, fructose 1-phosphate, fructose 1,6-phosphate, or dihydroxyacetone phosphate. The enzymes belong to the transaldolase family that serves in transfer reactions in the pentose phosphate cycle, and are more distantly related to fructose 1,6-bisphosphate aldolase.
Probab=32.77 E-value=2.4e+02 Score=26.01 Aligned_cols=116 Identities=20% Similarity=0.236 Sum_probs=0.0
Q ss_pred CchhHHHHHHHHHHC-CCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhCCCCceeee--------eccccccccccchh
Q 019890 158 DPDEPTNVAEAIASW-GLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEAL--------VAKSGLNVFAHNIE 228 (334)
Q Consensus 158 d~~Ep~~~A~av~~~-GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~P~i~vE~L--------l~~ag~dv~~HnlE 228 (334)
+.+++.++|+++.++ |...|-|+.-. .=.+.++.|++..-.+.+-.+ ...+|.+++.
T Consensus 62 ~~e~~i~~a~~l~~~~~~~~iKIP~T~----------~gl~ai~~L~~~gi~v~~T~V~s~~Qa~~Aa~AGA~yvs---- 127 (211)
T cd00956 62 DAEGMVAEARKLASLGGNVVVKIPVTE----------DGLKAIKKLSEEGIKTNVTAIFSAAQALLAAKAGATYVS---- 127 (211)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEEcCcH----------hHHHHHHHHHHcCCceeeEEecCHHHHHHHHHcCCCEEE----
Q ss_pred hHHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCcceEeeceEEecCCCHHHHHHHHHHHHHcCCcEEeecc
Q 019890 229 TVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQ 298 (334)
Q Consensus 229 Tv~~l~~~Vr~r~~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGlGETdEE~~etl~~Lre~gvd~vtigq 298 (334)
-.+.+|.+.+.+- +++++.+.+.... .-..|-+|+.==-+..|+.+.+. +|+|.+|+.+
T Consensus 128 ---P~vgR~~~~g~dg---~~~i~~i~~~~~~-~~~~tkil~As~r~~~ei~~a~~----~Gad~vTv~~ 186 (211)
T cd00956 128 ---PFVGRIDDLGGDG---MELIREIRTIFDN-YGFDTKILAASIRNPQHVIEAAL----AGADAITLPP 186 (211)
T ss_pred ---EecChHhhcCCCH---HHHHHHHHHHHHH-cCCCceEEecccCCHHHHHHHHH----cCCCEEEeCH
No 448
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=32.70 E-value=2.1e+02 Score=26.55 Aligned_cols=124 Identities=14% Similarity=0.096 Sum_probs=63.4
Q ss_pred chhHHHHHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhCCCCceeeeeccccccccccchhhHHHHHHhhc
Q 019890 159 PDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVAKSGLNVFAHNIETVEELQSAVR 238 (334)
Q Consensus 159 ~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~P~i~vE~Ll~~ag~dv~~HnlETv~~l~~~Vr 238 (334)
..+|.+.|+...+.|++++.|. |.|... |...-.++|++|.+.. .+.+++- -|+.. +|.++.++..=.
T Consensus 34 ~~dp~~~a~~~~~~g~~~l~i~--DLd~~~--~~~~n~~~i~~i~~~~-~~~v~vg---GGir~----~edv~~~l~~Ga 101 (233)
T cd04723 34 TSDPLDVARAYKELGFRGLYIA--DLDAIM--GRGDNDEAIRELAAAW-PLGLWVD---GGIRS----LENAQEWLKRGA 101 (233)
T ss_pred CCCHHHHHHHHHHCCCCEEEEE--eCcccc--CCCccHHHHHHHHHhC-CCCEEEe---cCcCC----HHHHHHHHHcCC
Confidence 5689999999999999999884 433222 2223356787776642 2223321 11111 334444433211
Q ss_pred C----CCCCHHHHHHHHHHHHHhCCC-cceEeeceEEec---CCCHHHHHHHHHHHHHcCCcEEeec
Q 019890 239 D----HRANFKQSLDVLMMAKDYVPA-GTLTKTSIMLGC---GETPDQVVSTMEKVRAAGVDVMTFG 297 (334)
Q Consensus 239 ~----r~~tye~sL~vL~~ak~~~p~-Gl~tkTgiMVGl---GETdEE~~etl~~Lre~gvd~vtig 297 (334)
+ ....+.. ++++.+-+.++. -+.+.-+.-=|. -++..+..+.++.+.+. ++.+.+-
T Consensus 102 ~~viigt~~~~~--~~~~~~~~~~~~~~iivslD~~~~~~~~~~~~~~~~~~~~~~~~~-~~~li~~ 165 (233)
T cd04723 102 SRVIVGTETLPS--DDDEDRLAALGEQRLVLSLDFRGGQLLKPTDFIGPEELLRRLAKW-PEELIVL 165 (233)
T ss_pred CeEEEcceeccc--hHHHHHHHhcCCCCeEEEEeccCCeeccccCcCCHHHHHHHHHHh-CCeEEEE
Confidence 0 1233333 566666555542 122222221110 02455566667777777 7766664
No 449
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=32.69 E-value=1.3e+02 Score=29.40 Aligned_cols=52 Identities=15% Similarity=0.226 Sum_probs=36.6
Q ss_pred CHHHHHHHHHHHHHhCCCc--ceEeeceEEecCCCHHHHHHHHHHHHHcCCcEEeec
Q 019890 243 NFKQSLDVLMMAKDYVPAG--TLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFG 297 (334)
Q Consensus 243 tye~sL~vL~~ak~~~p~G--l~tkTgiMVGlGETdEE~~etl~~Lre~gvd~vtig 297 (334)
+.+...++++.+++..|.+ +.+|..+ |+ ++.++..+.++.|.+.|+|.++|-
T Consensus 115 ~~~~~~eiv~avr~~~~~~~pVsvKiR~--g~-~~~~~~~~~a~~l~~~Gvd~i~Vh 168 (312)
T PRK10550 115 DPELIYQGAKAMREAVPAHLPVTVKVRL--GW-DSGERKFEIADAVQQAGATELVVH 168 (312)
T ss_pred CHHHHHHHHHHHHHhcCCCcceEEEEEC--CC-CCchHHHHHHHHHHhcCCCEEEEC
Confidence 3466678888888876422 3445443 54 334568899999999999999995
No 450
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=32.68 E-value=98 Score=28.44 Aligned_cols=48 Identities=25% Similarity=0.346 Sum_probs=28.9
Q ss_pred CCchhHHHHHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhCCC
Q 019890 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPN 208 (334)
Q Consensus 157 ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~P~ 208 (334)
.+++++.+.++.+.+.|++.|.|.--. ...-...+.++++.+++..|+
T Consensus 143 ~~~~~l~~~~~~~~~~g~~~i~l~Dt~----G~~~P~~v~~li~~l~~~~~~ 190 (265)
T cd03174 143 TDPEYVLEVAKALEEAGADEISLKDTV----GLATPEEVAELVKALREALPD 190 (265)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEechhc----CCcCHHHHHHHHHHHHHhCCC
Confidence 567777777777777777777662111 111234566777777776554
No 451
>TIGR03821 AblA_like_1 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in E. coli, Buchnera, Yersinia, etc.
Probab=32.67 E-value=3.2e+02 Score=26.81 Aligned_cols=67 Identities=15% Similarity=0.248 Sum_probs=30.5
Q ss_pred HHHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhCCCCceeeeeccccccccccchhhHHHHHHhh
Q 019890 164 NVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVAKSGLNVFAHNIETVEELQSAV 237 (334)
Q Consensus 164 ~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~P~i~vE~Ll~~ag~dv~~HnlETv~~l~~~V 237 (334)
+.++.++..|+..+++++.|.. ..--+.+.+.|+.+++. ++.+... .--..-+|.|.++.+.|++.+
T Consensus 194 el~~~L~~~~~~~~~~~h~dh~---~Ei~d~~~~ai~~L~~~--Gi~v~~q--tvllkgiNDn~~~l~~L~~~l 260 (321)
T TIGR03821 194 GLCDLLANSRLQTVLVVHINHA---NEIDAEVADALAKLRNA--GITLLNQ--SVLLRGVNDNADTLAALSERL 260 (321)
T ss_pred HHHHHHHhcCCcEEEEeeCCCh---HhCcHHHHHHHHHHHHc--CCEEEec--ceeeCCCCCCHHHHHHHHHHH
Confidence 4445555667766666676532 10012344555555442 2322211 111123455666666555443
No 452
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=32.65 E-value=1.3e+02 Score=31.72 Aligned_cols=54 Identities=17% Similarity=0.091 Sum_probs=39.3
Q ss_pred CCCchhHHHHHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhCC-CCceee
Q 019890 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKP-NMLIEA 213 (334)
Q Consensus 156 ~ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~P-~i~vE~ 213 (334)
..+++...+.|+.+.++|.+.|.|-=- ..-.-.....++|++|++..| ++.|++
T Consensus 151 ~~t~e~~~~~a~~l~~~Gad~I~IkDt----aGll~P~~~~~LV~~Lk~~~~~~ipI~~ 205 (499)
T PRK12330 151 IHTVEGFVEQAKRLLDMGADSICIKDM----AALLKPQPAYDIVKGIKEACGEDTRINL 205 (499)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEeCCC----ccCCCHHHHHHHHHHHHHhCCCCCeEEE
Confidence 358899999999999999999888210 111124678899999999875 655544
No 453
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=32.57 E-value=4.9e+02 Score=25.56 Aligned_cols=63 Identities=11% Similarity=0.095 Sum_probs=40.9
Q ss_pred CCCCHHHHHHHHHHHHHhCCCcceEeeceEE--e--cC------CCHHH----HHHHHHHHHHcCCcEEeeccCcCCC
Q 019890 240 HRANFKQSLDVLMMAKDYVPAGTLTKTSIML--G--CG------ETPDQ----VVSTMEKVRAAGVDVMTFGQYMRPS 303 (334)
Q Consensus 240 r~~tye~sL~vL~~ak~~~p~Gl~tkTgiMV--G--lG------ETdEE----~~etl~~Lre~gvd~vtigqYlrP~ 303 (334)
++.+.++..+.++.+.+..|+.+.+. .+++ | |. -++++ +....+.|.+.|+....+..|.+|.
T Consensus 162 Pgqt~~~~~~~l~~~~~l~~~~is~y-~l~~~~gT~~~~~~~~~~~~~~~~~~~~~~~~~L~~~Gy~~yei~~fa~~~ 238 (360)
T TIGR00539 162 PLQTLNSLKEELKLAKELPINHLSAY-ALSVEPNTNFEKNAKKLPDDDSCAHFDEVVREILEGFGFKQYEVSNYAKAG 238 (360)
T ss_pred CCCCHHHHHHHHHHHHccCCCEEEee-cceEcCCChhhhhhhcCcCHHHHHHHHHHHHHHHHHcCCceeehhhhcCCC
Confidence 57888888899999988877633222 2222 1 10 02222 2344567888999999999998886
No 454
>PRK15108 biotin synthase; Provisional
Probab=32.43 E-value=1.3e+02 Score=29.86 Aligned_cols=73 Identities=15% Similarity=0.154 Sum_probs=44.1
Q ss_pred CCHHHHHHHHHHHHHhCCCcceEeeceEEecCCCHHHHHHHHHHHHHcCCcEEeeccCcCCCCCCCcccccCCHHHHHHH
Q 019890 242 ANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMPVSEYITPEAFERY 321 (334)
Q Consensus 242 ~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGlGETdEE~~etl~~Lre~gvd~vtigqYlrP~~~h~~v~~yv~P~~f~~~ 321 (334)
..++...++++.+|+. |+.++ +-+|.-. .+.++.|+++|+|.++++.=..| ...+ +..++..++.|
T Consensus 108 ~~~e~i~~~i~~ik~~---~i~v~----~s~G~ls---~e~l~~LkeAGld~~n~~leT~p--~~f~--~I~~~~~~~~r 173 (345)
T PRK15108 108 RDMPYLEQMVQGVKAM---GLETC----MTLGTLS---ESQAQRLANAGLDYYNHNLDTSP--EFYG--NIITTRTYQER 173 (345)
T ss_pred chHHHHHHHHHHHHhC---CCEEE----EeCCcCC---HHHHHHHHHcCCCEEeeccccCh--HhcC--CCCCCCCHHHH
Confidence 4567778888888864 44332 3355433 56788899999999999755433 2222 22244456555
Q ss_pred HHHHHHh
Q 019890 322 RALGMEM 328 (334)
Q Consensus 322 ~~~a~~~ 328 (334)
-+..+.+
T Consensus 174 l~~i~~a 180 (345)
T PRK15108 174 LDTLEKV 180 (345)
T ss_pred HHHHHHH
Confidence 5544433
No 455
>PRK00507 deoxyribose-phosphate aldolase; Provisional
Probab=32.42 E-value=3.2e+02 Score=25.51 Aligned_cols=105 Identities=11% Similarity=0.195 Sum_probs=0.0
Q ss_pred CCCcccCCCCCCCCCCchhHHHHHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhCCCCceeee--------
Q 019890 143 CRFCNVKTSRAPPPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEAL-------- 214 (334)
Q Consensus 143 C~FC~V~~~r~p~~ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~P~i~vE~L-------- 214 (334)
|+..++|.+. ...+.-..+++.+.+.|.+++-++ .|..-+.+++...+.+-|+++++...+..+.++
T Consensus 61 ~tVigFP~G~----~~~~~K~~e~~~Ai~~GA~EiD~V-in~~~~~~g~~~~v~~ei~~v~~~~~~~~lKvIlEt~~L~~ 135 (221)
T PRK00507 61 CTVIGFPLGA----NTTAVKAFEAKDAIANGADEIDMV-INIGALKSGDWDAVEADIRAVVEAAGGAVLKVIIETCLLTD 135 (221)
T ss_pred EEEecccCCC----ChHHHHHHHHHHHHHcCCceEeee-ccHHHhcCCCHHHHHHHHHHHHHhcCCceEEEEeecCcCCH
Q ss_pred ---------eccccccccccc---------hhhHHHHHHhhcC--------CCCCHHHHHHHHH
Q 019890 215 ---------VAKSGLNVFAHN---------IETVEELQSAVRD--------HRANFKQSLDVLM 252 (334)
Q Consensus 215 ---------l~~ag~dv~~Hn---------lETv~~l~~~Vr~--------r~~tye~sL~vL~ 252 (334)
..++|.|++.-| +|.+..+.+.+.+ .=.++++-++.++
T Consensus 136 e~i~~a~~~~~~agadfIKTsTG~~~~gat~~~v~~m~~~~~~~~~IKasGGIrt~~~a~~~i~ 199 (221)
T PRK00507 136 EEKVKACEIAKEAGADFVKTSTGFSTGGATVEDVKLMRETVGPRVGVKASGGIRTLEDALAMIE 199 (221)
T ss_pred HHHHHHHHHHHHhCCCEEEcCCCCCCCCCCHHHHHHHHHHhCCCceEEeeCCcCCHHHHHHHHH
No 456
>PRK06801 hypothetical protein; Provisional
Probab=32.41 E-value=4.8e+02 Score=25.40 Aligned_cols=155 Identities=13% Similarity=0.105 Sum_probs=80.2
Q ss_pred CCchhHHHHHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhCCCCceeeee-ccccccccccchhhHHHHH-
Q 019890 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALV-AKSGLNVFAHNIETVEELQ- 234 (334)
Q Consensus 157 ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~P~i~vE~Ll-~~ag~dv~~HnlETv~~l~- 234 (334)
.+.+.+..+.+++.+.+.-=|+-++... ....|...|+.+++.+.+.. +|.+.+ .|-|. ++|++.+-.
T Consensus 26 ~n~e~~~avi~AAe~~~~PvIl~~~~~~--~~~~~~~~~~~~~~~~a~~~---~vpV~lHlDH~~-----~~e~i~~Ai~ 95 (286)
T PRK06801 26 LDSHFLRALFAAAKQERSPFIINIAEVH--FKYISLESLVEAVKFEAARH---DIPVVLNLDHGL-----HFEAVVRALR 95 (286)
T ss_pred CCHHHHHHHHHHHHHHCCCEEEEeCcch--hhcCCHHHHHHHHHHHHHHC---CCCEEEECCCCC-----CHHHHHHHHH
Confidence 5788888999999998877666666543 33346678888888887653 222220 01111 123322211
Q ss_pred ---Hhh--cCCCCCHHHHHHHHHHHHHhC-CCcceE--eeceEEecCCC------------HHHHHHHHHHHHHcCCcEE
Q 019890 235 ---SAV--RDHRANFKQSLDVLMMAKDYV-PAGTLT--KTSIMLGCGET------------PDQVVSTMEKVRAAGVDVM 294 (334)
Q Consensus 235 ---~~V--r~r~~tye~sL~vL~~ak~~~-p~Gl~t--kTgiMVGlGET------------dEE~~etl~~Lre~gvd~v 294 (334)
..| +.....|++-++.-+++.++. +.|+.+ --|- || |+. ..+..+..++.++.|+|.+
T Consensus 96 ~GftSVm~D~S~l~~eeNi~~t~~v~~~a~~~gv~VE~ElG~-vg-g~e~~v~~~~~~~~~~T~pe~a~~f~~~tgvD~L 173 (286)
T PRK06801 96 LGFSSVMFDGSTLEYEENVRQTREVVKMCHAVGVSVEAELGA-VG-GDEGGALYGEADSAKFTDPQLARDFVDRTGIDAL 173 (286)
T ss_pred hCCcEEEEcCCCCCHHHHHHHHHHHHHHHHHcCCeEEeecCc-cc-CCCCCcccCCcccccCCCHHHHHHHHHHHCcCEE
Confidence 111 112345555554444433322 124332 2222 22 211 2245788899999999999
Q ss_pred eeccCcCCCCCCCcccccCCHHHHHHHHHHHHHh
Q 019890 295 TFGQYMRPSKRHMPVSEYITPEAFERYRALGMEM 328 (334)
Q Consensus 295 tigqYlrP~~~h~~v~~yv~P~~f~~~~~~a~~~ 328 (334)
.+.-+--.++- . -.++-.|+.++++...+
T Consensus 174 AvaiGt~Hg~y----~-~~~~l~~e~l~~i~~~~ 202 (286)
T PRK06801 174 AVAIGNAHGKY----K-GEPKLDFARLAAIHQQT 202 (286)
T ss_pred EeccCCCCCCC----C-CCCCCCHHHHHHHHHhc
Confidence 98433323221 1 12223477777776543
No 457
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=32.29 E-value=2.3e+02 Score=25.20 Aligned_cols=109 Identities=16% Similarity=0.220 Sum_probs=57.3
Q ss_pred HHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhCCCCceeee-----------eccccccccccchhhHHHH
Q 019890 165 VAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEAL-----------VAKSGLNVFAHNIETVEEL 233 (334)
Q Consensus 165 ~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~P~i~vE~L-----------l~~ag~dv~~HnlETv~~l 233 (334)
+++.+.+.|.+.|++-... +...+.++++.+++..-.+.++++ ..+.|+|++..+-
T Consensus 68 ~~~~~~~~Gad~i~vh~~~-------~~~~~~~~i~~~~~~g~~~~~~~~~~~t~~~~~~~~~~~g~d~v~~~p------ 134 (206)
T TIGR03128 68 EAEQAFAAGADIVTVLGVA-------DDATIKGAVKAAKKHGKEVQVDLINVKDKVKRAKELKELGADYIGVHT------ 134 (206)
T ss_pred HHHHHHHcCCCEEEEeccC-------CHHHHHHHHHHHHHcCCEEEEEecCCCChHHHHHHHHHcCCCEEEEcC------
Confidence 4777889999988764432 123467788888764211111111 2223444443220
Q ss_pred HHhhcCCCCCH-HHHHHHHHHHHHhCCCcceEe-eceEEecCCCHHHHHHHHHHHHHcCCcEEeeccCc
Q 019890 234 QSAVRDHRANF-KQSLDVLMMAKDYVPAGTLTK-TSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYM 300 (334)
Q Consensus 234 ~~~Vr~r~~ty-e~sL~vL~~ak~~~p~Gl~tk-TgiMVGlGETdEE~~etl~~Lre~gvd~vtigqYl 300 (334)
-.. ...+ ..+++.++.+++..+. +.+- +| |=+.+. +..+.+.|+|.+-+|..+
T Consensus 135 --g~~--~~~~~~~~~~~i~~l~~~~~~-~~i~v~G-----GI~~~n----~~~~~~~Ga~~v~vGsai 189 (206)
T TIGR03128 135 --GLD--EQAKGQNPFEDLQTILKLVKE-ARVAVAG-----GINLDT----IPDVIKLGPDIVIVGGAI 189 (206)
T ss_pred --CcC--cccCCCCCHHHHHHHHHhcCC-CcEEEEC-----CcCHHH----HHHHHHcCCCEEEEeehh
Confidence 000 0011 1235667777776654 4332 23 225443 556678999999998664
No 458
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=32.27 E-value=94 Score=28.79 Aligned_cols=46 Identities=20% Similarity=0.239 Sum_probs=35.7
Q ss_pred CCchhHHHHHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhCCCCce
Q 019890 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLI 211 (334)
Q Consensus 157 ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~P~i~v 211 (334)
.++++..++++++.+.|++-+=+|--+ + ...+.|+++++.+|++.|
T Consensus 13 ~~~~~a~~ia~al~~gGi~~iEit~~t----p-----~a~~~I~~l~~~~~~~~v 58 (201)
T PRK06015 13 DDVEHAVPLARALAAGGLPAIEITLRT----P-----AALDAIRAVAAEVEEAIV 58 (201)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEeCCC----c-----cHHHHHHHHHHHCCCCEE
Confidence 578999999999999999987776643 2 135788888888887644
No 459
>PF02219 MTHFR: Methylenetetrahydrofolate reductase; InterPro: IPR003171 This family includes the 5,10-methylenetetrahydrofolate reductase 1.7.99.5 from EC from bacteria and methylenetetrahydrofolate reductase 1.5.1.20 from EC from eukaryotes. The structure for this domain is known [] to be a TIM barrel.; GO: 0004489 methylenetetrahydrofolate reductase (NADPH) activity, 0006555 methionine metabolic process, 0055114 oxidation-reduction process; PDB: 3IJD_B 1B5T_B 3FSU_C 1ZPT_C 2FMO_B 3FST_C 2FMN_C 1ZP3_A 1ZP4_B 1ZRQ_B ....
Probab=32.12 E-value=2.8e+02 Score=26.52 Aligned_cols=49 Identities=8% Similarity=0.043 Sum_probs=31.3
Q ss_pred CCchhHHHHHHHHHHCCCcEEEEeeecCCCCCC------chHHHHHHHHHHHHhh
Q 019890 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLAD------QGSGHFAQTVRKLKEL 205 (334)
Q Consensus 157 ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d------~Ga~~fa~lIr~Ik~~ 205 (334)
.+..++.+....+.+.|++.|++.++|.....| ++..+..++|+.|++.
T Consensus 82 ~n~~~l~~~L~~~~~~Gi~niL~l~GD~~~~g~~~~~~~~~~~~~~~Li~~i~~~ 136 (287)
T PF02219_consen 82 RNREALQSDLLGAHALGIRNILALTGDPPKGGDHFAKPVFDFDYALDLIRLIRQE 136 (287)
T ss_dssp SBHHHHHHHHHHHHHTT--EEEEESS-TSTTSSS----TTS-SSHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCeEEEecCCCCCCCccccCCCchhHHHHHHHHHHHHh
Confidence 456788999999999999999887777422211 2233457888888854
No 460
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=32.07 E-value=1e+02 Score=28.01 Aligned_cols=51 Identities=29% Similarity=0.430 Sum_probs=30.9
Q ss_pred HHHHHHHHCCCcEEEEeeecCCCCC-----------CchHHHHHHHHHHHHhhCCCCceeee
Q 019890 164 NVAEAIASWGLDYVVITSVDRDDLA-----------DQGSGHFAQTVRKLKELKPNMLIEAL 214 (334)
Q Consensus 164 ~~A~av~~~GlkeVVLTSv~rdDl~-----------d~Ga~~fa~lIr~Ik~~~P~i~vE~L 214 (334)
.+|+.+...|++.++|.--|.-+.. |-|......+.+.|++.+|++.++..
T Consensus 35 ~ia~~La~~Gv~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~~ 96 (202)
T TIGR02356 35 PAALYLAGAGVGTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAAQRLRELNSDIQVTAL 96 (202)
T ss_pred HHHHHHHHcCCCeEEEecCCEEcccchhhhhccChhhCCChHHHHHHHHHHHhCCCCEEEEe
Confidence 6778888999999888432211111 22222334456667777888777665
No 461
>cd08065 MPN_eIF3h Mpr1p, Pad1p N-terminal (MPN) domains without catalytic isopeptidase activity, found in eIF2h. Eukaryotic translation initiation factor 3 (eIF3) subunit h (eIF3h; eIF3 subunit 3; eIF3S3; eIF3-gamma; eIF3-p40) is an evolutionarily non-conserved subunit of the functional core that comprises eIF3a, eIF3b, eIF3c, eIF3e, eIF3f, and eIF3h, and contains the MPN domain. However, it lacks the canonical JAMM motif, and therefore does not show catalytic isopeptidase activity.Together with eIF3e and eIF3f, eIF3h stabilizes the eIF3 complex. Results suggest that eIF3h regulates cell growth and viability, and that over-expression of the gene may provide growth advantage to prostate, breast, and liver cancer cells. For example, EIF3h gene amplification is common in late-stage prostate cancer suggesting that it may be functionally involved in the progression of the disease. It has been shown that coamplification of MYC, a well characterized oncogene involved in cell growth, different
Probab=32.04 E-value=84 Score=30.00 Aligned_cols=68 Identities=24% Similarity=0.338 Sum_probs=48.0
Q ss_pred HHHHHHHHHHhCCCcceEeeceEEec--CCC-----------------------H-HHHHHHHHHHHHcCCcEEeeccCc
Q 019890 247 SLDVLMMAKDYVPAGTLTKTSIMLGC--GET-----------------------P-DQVVSTMEKVRAAGVDVMTFGQYM 300 (334)
Q Consensus 247 sL~vL~~ak~~~p~Gl~tkTgiMVGl--GET-----------------------d-EE~~etl~~Lre~gvd~vtigqYl 300 (334)
.+.+++++++..|. -.+|.|+|+ |.+ + +.-.++++.++++++|...||=|-
T Consensus 10 llkIv~H~~~~~p~---~v~G~LLG~~~~~~leVtn~Fp~P~~~~~~~~~~~~~~~~yq~~m~~~~r~v~~~e~iVGWY~ 86 (266)
T cd08065 10 VLKIIKHCKEELPE---LVQGQLLGLDVGGTLEVTNCFPFPKSEEDDSDRADEDIADYQLEMMRLLREVNVDHNHVGWYQ 86 (266)
T ss_pred HHHHHHHHhcCCCc---EEEEEEeeeEcCCEEEEEeccCCCCCCCCCcchhhhhHHHHHHHHHHHHHHhCCCCcEEEeEe
Confidence 46788888887665 567889998 322 1 456788999999999888888774
Q ss_pred -CCCCCCCcccccCCHHHHHHHHH
Q 019890 301 -RPSKRHMPVSEYITPEAFERYRA 323 (334)
Q Consensus 301 -rP~~~h~~v~~yv~P~~f~~~~~ 323 (334)
-| .-.+.+|..++.+..
T Consensus 87 S~p------~~~~~~~s~id~~~~ 104 (266)
T cd08065 87 STY------LGSFFTRDLIETQYN 104 (266)
T ss_pred ecC------CCCcCCHHHHHHHHH
Confidence 33 335666766665543
No 462
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=31.83 E-value=2.9e+02 Score=25.04 Aligned_cols=114 Identities=18% Similarity=0.281 Sum_probs=65.4
Q ss_pred HHHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhCCCCce--eee-------eccccccccccc---hhhHH
Q 019890 164 NVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLI--EAL-------VAKSGLNVFAHN---IETVE 231 (334)
Q Consensus 164 ~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~P~i~v--E~L-------l~~ag~dv~~Hn---lETv~ 231 (334)
+.++.+.+.|.+.|++-+.... .+++ ..+.++++.+++. +++.+ ++. +.+.|.|++.-| .....
T Consensus 79 ~~v~~a~~aGad~I~~d~~~~~-~p~~--~~~~~~i~~~~~~-~~i~vi~~v~t~ee~~~a~~~G~d~i~~~~~g~t~~~ 154 (221)
T PRK01130 79 KEVDALAAAGADIIALDATLRP-RPDG--ETLAELVKRIKEY-PGQLLMADCSTLEEGLAAQKLGFDFIGTTLSGYTEET 154 (221)
T ss_pred HHHHHHHHcCCCEEEEeCCCCC-CCCC--CCHHHHHHHHHhC-CCCeEEEeCCCHHHHHHHHHcCCCEEEcCCceeecCC
Confidence 4567778899996666443210 1211 2456788888774 44322 222 667788876432 21100
Q ss_pred HHHHhhcCCCCCHHHHHHHHHHHHHhCCCcceEeeceEEecCC-CHHHHHHHHHHHHHcCCcEEeeccCc
Q 019890 232 ELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGE-TPDQVVSTMEKVRAAGVDVMTFGQYM 300 (334)
Q Consensus 232 ~l~~~Vr~r~~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGlGE-TdEE~~etl~~Lre~gvd~vtigqYl 300 (334)
. ......++.++++++.. ..-+|++.|= |.+++.+. .+.|.|.+-+|..+
T Consensus 155 ~---------~~~~~~~~~i~~i~~~~------~iPvia~GGI~t~~~~~~~----l~~GadgV~iGsai 205 (221)
T PRK01130 155 K---------KPEEPDFALLKELLKAV------GCPVIAEGRINTPEQAKKA----LELGAHAVVVGGAI 205 (221)
T ss_pred C---------CCCCcCHHHHHHHHHhC------CCCEEEECCCCCHHHHHHH----HHCCCCEEEEchHh
Confidence 0 01111256677777642 3457788877 57766654 45799999999654
No 463
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=31.81 E-value=4.7e+02 Score=25.77 Aligned_cols=50 Identities=12% Similarity=0.065 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHhCC------CcceEeeceEEecCCCHHHHHHHHHHHHHcCCcEEeecc
Q 019890 244 FKQSLDVLMMAKDYVP------AGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQ 298 (334)
Q Consensus 244 ye~sL~vL~~ak~~~p------~Gl~tkTgiMVGlGETdEE~~etl~~Lre~gvd~vtigq 298 (334)
-+...++++.+|+... . +.+|-+ .+-+++|+.+..+.+.+.|+|-+++..
T Consensus 191 ~~~~~eiv~aVr~~~~~~~~~~P-V~vKls----p~~~~~~~~~ia~~l~~~Gadgi~~~n 246 (344)
T PRK05286 191 GEALDELLAALKEAQAELHGYVP-LLVKIA----PDLSDEELDDIADLALEHGIDGVIATN 246 (344)
T ss_pred HHHHHHHHHHHHHHHhccccCCc-eEEEeC----CCCCHHHHHHHHHHHHHhCCcEEEEeC
Confidence 3444455666655432 1 344544 256788999999999999999999864
No 464
>smart00812 Alpha_L_fucos Alpha-L-fucosidase. O-Glycosyl hydrolases (EC 3.2.1.-) are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site PUBMED:. Because the fold of proteins is better conserved than their sequences, some of the families can be grouped in 'clans'. Family 29 encompasses alpha-L-fucosidases, which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Deficiency of alpha-L-fucosidase results in the lysosomal storage disease fucosidosis.
Probab=31.71 E-value=45 Score=33.73 Aligned_cols=54 Identities=20% Similarity=0.310 Sum_probs=33.5
Q ss_pred CCCchhHHHHHHHHHHCCCcEEEEeeecCCCC-------C-----Cc--hHHHHHHHHHHHHhhCCCCceeee
Q 019890 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRDDL-------A-----DQ--GSGHFAQTVRKLKELKPNMLIEAL 214 (334)
Q Consensus 156 ~ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl-------~-----d~--Ga~~fa~lIr~Ik~~~P~i~vE~L 214 (334)
..|+++. |+.+++.|.||+|||+-+.|-+ . +. +.+-+.++.++.++. ++.+-+.
T Consensus 80 ~fD~~~W---a~~~k~AGakY~vlTaKHHDGF~lw~S~~t~~n~~~~~pkrDiv~el~~A~rk~--Glk~G~Y 147 (384)
T smart00812 80 KFDPEEW---ADLFKKAGAKYVVLTAKHHDGFCLWDSKYSNWNAVDTGPKRDLVGELADAVRKR--GLKFGLY 147 (384)
T ss_pred hCCHHHH---HHHHHHcCCCeEEeeeeecCCccccCCCCCCCcccCCCCCcchHHHHHHHHHHc--CCeEEEE
Confidence 4555554 5555799999999999875411 1 11 234567777777764 5555444
No 465
>PRK11613 folP dihydropteroate synthase; Provisional
Probab=31.66 E-value=4.9e+02 Score=25.31 Aligned_cols=69 Identities=12% Similarity=0.130 Sum_probs=40.4
Q ss_pred CCCchhHHHHHHHHHHCCCcEEEEeeec-CCCCCC----chHHHHHHHHHHHHhhCC-CCceeee-------eccccccc
Q 019890 156 PPDPDEPTNVAEAIASWGLDYVVITSVD-RDDLAD----QGSGHFAQTVRKLKELKP-NMLIEAL-------VAKSGLNV 222 (334)
Q Consensus 156 ~ld~~Ep~~~A~av~~~GlkeVVLTSv~-rdDl~d----~Ga~~fa~lIr~Ik~~~P-~i~vE~L-------l~~ag~dv 222 (334)
..++++..+.|+.+.+.|..-|-|=+.- |..... ...+.+..+|++|++... -++|... ..++|.++
T Consensus 34 ~~~~~~a~~~a~~~~~~GAdIIDIGgeSTrPg~~~v~~eeE~~Rv~pvI~~l~~~~~~~ISIDT~~~~va~~AL~~Gadi 113 (282)
T PRK11613 34 HNSLIDAVKHANLMINAGATIIDVGGESTRPGAAEVSVEEELDRVIPVVEAIAQRFEVWISVDTSKPEVIRESAKAGAHI 113 (282)
T ss_pred CCCHHHHHHHHHHHHHCCCcEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEECCCHHHHHHHHHcCCCE
Confidence 4689999999999999999887774332 211111 112335556677765321 1344433 33457776
Q ss_pred cc
Q 019890 223 FA 224 (334)
Q Consensus 223 ~~ 224 (334)
+|
T Consensus 114 IN 115 (282)
T PRK11613 114 IN 115 (282)
T ss_pred EE
Confidence 64
No 466
>PRK05474 xylose isomerase; Provisional
Probab=31.64 E-value=95 Score=32.25 Aligned_cols=51 Identities=25% Similarity=0.429 Sum_probs=35.1
Q ss_pred hHHHHHHH--------HHHCCCcEEEEeeecCCCCCCchH------HHHHHHHHHHHhhCCCCceeee
Q 019890 161 EPTNVAEA--------IASWGLDYVVITSVDRDDLADQGS------GHFAQTVRKLKELKPNMLIEAL 214 (334)
Q Consensus 161 Ep~~~A~a--------v~~~GlkeVVLTSv~rdDl~d~Ga------~~fa~lIr~Ik~~~P~i~vE~L 214 (334)
+|.+.|++ +.++|+.+++. -|+ |+...|. ..|.++++.+++......|.++
T Consensus 72 d~~~~a~~k~d~afe~~~kLg~~~~~F--HD~-D~~peg~s~~E~~~~l~~i~~~~k~~~~~tGikll 136 (437)
T PRK05474 72 DALDLAKAKADAAFEFFTKLGVPYYCF--HDV-DVAPEGASLKEYNANLDEIVDYLKEKQAETGVKLL 136 (437)
T ss_pred CHHHHHHHHHHHHHHHHHHhCCCeecc--Ccc-ccCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCeee
Confidence 56666766 88999999888 333 3433331 3578888888887666666666
No 467
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=31.53 E-value=1.2e+02 Score=30.44 Aligned_cols=51 Identities=14% Similarity=0.189 Sum_probs=34.8
Q ss_pred HHHHHHHHHhCCCcc-eEeec---eEEec--CCCHHH-HHHHHHHHHHcCCcEEeecc
Q 019890 248 LDVLMMAKDYVPAGT-LTKTS---IMLGC--GETPDQ-VVSTMEKVRAAGVDVMTFGQ 298 (334)
Q Consensus 248 L~vL~~ak~~~p~Gl-~tkTg---iMVGl--GETdEE-~~etl~~Lre~gvd~vtigq 298 (334)
+++++.+|+..+..+ .++-+ .+-|+ |.+.+| .++.++.|.+.|+|.+++..
T Consensus 213 ~Eiv~aVr~~vg~~~igvRis~~~~~~~~~~G~~~~e~~~~~~~~L~~~giD~i~vs~ 270 (362)
T PRK10605 213 LEVVDAGIAEWGADRIGIRISPLGTFNNVDNGPNEEADALYLIEQLGKRGIAYLHMSE 270 (362)
T ss_pred HHHHHHHHHHcCCCeEEEEECCccccccCCCCCCHHHHHHHHHHHHHHcCCCEEEecc
Confidence 578888888765422 11211 11133 678888 79999999999999999863
No 468
>cd03412 CbiK_N Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), N-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=31.43 E-value=1.5e+02 Score=24.97 Aligned_cols=47 Identities=19% Similarity=0.337 Sum_probs=27.9
Q ss_pred hHHHHHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhh-CCCCcee
Q 019890 161 EPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKEL-KPNMLIE 212 (334)
Q Consensus 161 Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~-~P~i~vE 212 (334)
.+.+..+.+.+.|+++|++++.. +-. | .++.++-+.+.+. .|...+.
T Consensus 57 ~~~eaL~~l~~~G~~~V~V~Pl~---l~~-G-~e~~di~~~v~~~~~~~~~i~ 104 (127)
T cd03412 57 TPEEALAKLAADGYTEVIVQSLH---IIP-G-EEYEKLKREVDAFKKGFKKIK 104 (127)
T ss_pred CHHHHHHHHHHCCCCEEEEEeCe---eEC-c-HHHHHHHHHHHHHhCCCceEE
Confidence 34555566778999999999976 322 3 2345555555432 3544443
No 469
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=31.30 E-value=4.3e+02 Score=24.49 Aligned_cols=149 Identities=15% Similarity=0.191 Sum_probs=72.5
Q ss_pred hhHHHHHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhCCCCceeeeeccccccccccchhh--HHHHHHhh
Q 019890 160 DEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVAKSGLNVFAHNIET--VEELQSAV 237 (334)
Q Consensus 160 ~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~P~i~vE~Ll~~ag~dv~~HnlET--v~~l~~~V 237 (334)
++..+.|+.+.+.|.+.|.+-|-+ +. ..+.+.+++++||+.. + +-+++.-..++-+....+. ++.|++.-
T Consensus 11 e~~~~ia~~v~~~gtDaI~VGGS~--gv---t~~~~~~~v~~ik~~~-~--lPvilfp~~~~~i~~~aD~~~~~sllns~ 82 (205)
T TIGR01769 11 DEIEKIAKNAKDAGTDAIMVGGSL--GI---VESNLDQTVKKIKKIT-N--LPVILFPGNVNGLSRYADAVFFMSLLNSA 82 (205)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCcC--CC---CHHHHHHHHHHHHhhc-C--CCEEEECCCccccCcCCCEEEEEEeecCC
Confidence 556677778899999998773321 12 2457888999998842 1 1222111111111111110 13333332
Q ss_pred cCCCCCHHHHHHHHHHHHH----hCCCcce-EeeceEEec-C-------CCHHHHHHHHHHHHHcCCcEEeeccCcCCCC
Q 019890 238 RDHRANFKQSLDVLMMAKD----YVPAGTL-TKTSIMLGC-G-------ETPDQVVSTMEKVRAAGVDVMTFGQYMRPSK 304 (334)
Q Consensus 238 r~r~~tye~sL~vL~~ak~----~~p~Gl~-tkTgiMVGl-G-------ETdEE~~etl~~Lre~gvd~vtigqYlrP~~ 304 (334)
. +.+-...-.+-+-.+|+ ..|.|.. +..+-=||. | ...||........+..|++.+++- |+.=.
T Consensus 83 ~-~~~i~g~~~~~~~~~~~~~~e~ip~gYiv~~~~~~v~~v~~a~~ip~~~~e~~~~~a~aa~~~G~~~i~Le-~~sGa- 159 (205)
T TIGR01769 83 D-TYFIVGAQILGAITILKLNLEVIPMAYLIVGPGGAVGYVGKAREIPYNKPEIAAAYCLAAKYFGMKWVYLE-AGSGA- 159 (205)
T ss_pred C-cchhhhHHHHHHHHHHHcCCcccceEEEEECCCCceeeecCcccCCCCCHHHHHHHHHHHHHcCCCEEEEE-cCCCC-
Confidence 2 11111221222211232 2233332 233333444 3 356888888888899999999983 43110
Q ss_pred CCCcccccCCHHHHHHHHHH
Q 019890 305 RHMPVSEYITPEAFERYRAL 324 (334)
Q Consensus 305 ~h~~v~~yv~P~~f~~~~~~ 324 (334)
...++++.++..++.
T Consensus 160 -----~~~v~~e~i~~Vk~~ 174 (205)
T TIGR01769 160 -----SYPVNPETISLVKKA 174 (205)
T ss_pred -----CCCCCHHHHHHHHHh
Confidence 223446666666544
No 470
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=31.29 E-value=1.1e+02 Score=33.64 Aligned_cols=50 Identities=28% Similarity=0.391 Sum_probs=35.1
Q ss_pred HHHHHHHHHhCCCcceE--eeceEEec--CCCHHHHHHHHHHHHHcCCcEEeec
Q 019890 248 LDVLMMAKDYVPAGTLT--KTSIMLGC--GETPDQVVSTMEKVRAAGVDVMTFG 297 (334)
Q Consensus 248 L~vL~~ak~~~p~Gl~t--kTgiMVGl--GETdEE~~etl~~Lre~gvd~vtig 297 (334)
+++++.+|+..+.++.+ +-+..=.. |.+.+|.++.++.|.+.|+|.|+|-
T Consensus 605 ~eiv~~ir~~~~~~~~v~~ri~~~~~~~~g~~~~~~~~~~~~l~~~g~d~i~vs 658 (765)
T PRK08255 605 LEVFRAVRAVWPAEKPMSVRISAHDWVEGGNTPDDAVEIARAFKAAGADLIDVS 658 (765)
T ss_pred HHHHHHHHHhcCCCCeeEEEEccccccCCCCCHHHHHHHHHHHHhcCCcEEEeC
Confidence 47888888876533322 22221111 6788999999999999999999983
No 471
>TIGR00284 dihydropteroate synthase-related protein. This protein has been found so far only in the Archaea, and in particular in those archaea that lack a bacterial-type dihydropteroate synthase. The central region of this protein shows considerable homology to the amino-terminal half of dihydropteroate synthases, while the carboxyl-terminal region shows homology to the small, uncharacterized protein slr0651 of Synechocystis PCC6803.
Probab=31.24 E-value=6e+02 Score=26.85 Aligned_cols=120 Identities=14% Similarity=0.150 Sum_probs=72.1
Q ss_pred hhHHHHHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhCC-CCceeee-------eccccccccccc-hhhH
Q 019890 160 DEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKP-NMLIEAL-------VAKSGLNVFAHN-IETV 230 (334)
Q Consensus 160 ~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~P-~i~vE~L-------l~~ag~dv~~Hn-lETv 230 (334)
+++.+.|+...+.|.+.|-|-++-. .-+.+.+..+|+.|++... -++|... -.++|.+++|.- -+..
T Consensus 165 ~~i~~~A~~~~~~GADIIDIG~~st----~p~~~~v~~~V~~l~~~~~~pISIDT~~~~v~eaAL~aGAdiINsVs~~~~ 240 (499)
T TIGR00284 165 DGIEGLAARMERDGADMVALGTGSF----DDDPDVVKEKVKTALDALDSPVIADTPTLDELYEALKAGASGVIMPDVENA 240 (499)
T ss_pred HHHHHHHHHHHHCCCCEEEECCCcC----CCcHHHHHHHHHHHHhhCCCcEEEeCCCHHHHHHHHHcCCCEEEECCccch
Confidence 8899999999999999998855431 1145568888998887531 1444433 334577766642 1122
Q ss_pred HHHHHhhcC-----------CCCCHHHHHHHHHHHHHhCCCcc-eEeeceEEecCCCHHHHHHHHHHHHH
Q 019890 231 EELQSAVRD-----------HRANFKQSLDVLMMAKDYVPAGT-LTKTSIMLGCGETPDQVVSTMEKVRA 288 (334)
Q Consensus 231 ~~l~~~Vr~-----------r~~tye~sL~vL~~ak~~~p~Gl-~tkTgiMVGlGETdEE~~etl~~Lre 288 (334)
+.+.+-+.. ....|+...+.++.+++. |+ .+--|=++|+ ...++.+.+..++.
T Consensus 241 d~~~~l~a~~g~~vVlm~~~~~~~~~~l~~~ie~a~~~---Gi~~IIlDPglg~--~~~~l~~sL~~l~~ 305 (499)
T TIGR00284 241 VELASEKKLPEDAFVVVPGNQPTNYEELAKAVKKLRTS---GYSKVAADPSLSP--PLLGLLESIIRFRR 305 (499)
T ss_pred hHHHHHHHHcCCeEEEEcCCCCchHHHHHHHHHHHHHC---CCCcEEEeCCCCc--chHHHHHHHHHHHH
Confidence 333221110 134567777778888875 66 3334444444 45567777777774
No 472
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=31.21 E-value=1.1e+02 Score=30.05 Aligned_cols=58 Identities=24% Similarity=0.315 Sum_probs=39.7
Q ss_pred hHHHHHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhCCCCceee---e-------eccccccccc
Q 019890 161 EPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEA---L-------VAKSGLNVFA 224 (334)
Q Consensus 161 Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~P~i~vE~---L-------l~~ag~dv~~ 224 (334)
+-.+.++++.+.|++.|+|...+. ......+.|++|++..|++.|=+ . +.++|.|.+.
T Consensus 94 ~~~~~~~~l~eagv~~I~vd~~~G------~~~~~~~~i~~ik~~~p~v~Vi~G~v~t~~~A~~l~~aGaD~I~ 161 (325)
T cd00381 94 DDKERAEALVEAGVDVIVIDSAHG------HSVYVIEMIKFIKKKYPNVDVIAGNVVTAEAARDLIDAGADGVK 161 (325)
T ss_pred hHHHHHHHHHhcCCCEEEEECCCC------CcHHHHHHHHHHHHHCCCceEEECCCCCHHHHHHHHhcCCCEEE
Confidence 446677788889999998865331 12467889999999877543311 1 6678888764
No 473
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=30.98 E-value=4.8e+02 Score=24.97 Aligned_cols=128 Identities=16% Similarity=0.190 Sum_probs=71.4
Q ss_pred CCCchhHHHHHHHHHHCCCcEEEEeeecCCCCCCchH---------------HHHHHHHHHHHhhCCCCceeee------
Q 019890 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGS---------------GHFAQTVRKLKELKPNMLIEAL------ 214 (334)
Q Consensus 156 ~ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga---------------~~fa~lIr~Ik~~~P~i~vE~L------ 214 (334)
-.+.+.-.+.++++.+.|++-+=|-=--.|-+.||.. ..+-+.+++|++. +++.+-++
T Consensus 25 ~P~~~~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~rAL~~g~~~~~~~~~~~~~r~~-~~~p~vlm~Y~N~i 103 (263)
T CHL00200 25 DPDIVITKKALKILDKKGADIIELGIPYSDPLADGPIIQEASNRALKQGINLNKILSILSEVNGE-IKAPIVIFTYYNPV 103 (263)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC-CCCCEEEEecccHH
Confidence 3577888999999999999987763222444566531 2344566666643 44433232
Q ss_pred -----------eccccccccccc---hhhHHHHHHhhcC---------CCCCHHHHHHHHHHHHHhCCCcceEeeceEEe
Q 019890 215 -----------VAKSGLNVFAHN---IETVEELQSAVRD---------HRANFKQSLDVLMMAKDYVPAGTLTKTSIMLG 271 (334)
Q Consensus 215 -----------l~~ag~dv~~Hn---lETv~~l~~~Vr~---------r~~tye~sL~vL~~ak~~~p~Gl~tkTgiMVG 271 (334)
.+++|+|.+--. +|-..++.+.++. ...+-+++++.+...- . |+.-.-+ ..|
T Consensus 104 ~~~G~e~F~~~~~~aGvdgviipDLP~ee~~~~~~~~~~~gi~~I~lv~PtT~~eri~~i~~~a---~-gFIY~vS-~~G 178 (263)
T CHL00200 104 LHYGINKFIKKISQAGVKGLIIPDLPYEESDYLISVCNLYNIELILLIAPTSSKSRIQKIARAA---P-GCIYLVS-TTG 178 (263)
T ss_pred HHhCHHHHHHHHHHcCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHhC---C-CcEEEEc-CCC
Confidence 556666542221 2444455544432 1233334443333222 2 5666545 678
Q ss_pred c-CCC---HHHHHHHHHHHHHc
Q 019890 272 C-GET---PDQVVSTMEKVRAA 289 (334)
Q Consensus 272 l-GET---dEE~~etl~~Lre~ 289 (334)
. |.. .+++.+.++.+|+.
T Consensus 179 vTG~~~~~~~~~~~~i~~ir~~ 200 (263)
T CHL00200 179 VTGLKTELDKKLKKLIETIKKM 200 (263)
T ss_pred CCCCCccccHHHHHHHHHHHHh
Confidence 8 764 46788888888874
No 474
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=30.95 E-value=2.3e+02 Score=27.57 Aligned_cols=80 Identities=15% Similarity=0.167 Sum_probs=50.0
Q ss_pred HHHHHHHHHHhhCCCCce--eee-------eccccccccc-cchhhHHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCcce
Q 019890 194 HFAQTVRKLKELKPNMLI--EAL-------VAKSGLNVFA-HNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTL 263 (334)
Q Consensus 194 ~fa~lIr~Ik~~~P~i~v--E~L-------l~~ag~dv~~-HnlETv~~l~~~Vr~r~~tye~sL~vL~~ak~~~p~Gl~ 263 (334)
.+.+.|+++|+..|+..| |+- ..++|+|++. || -+.++-.+.++.+++..|. +.
T Consensus 174 ~i~~av~~~r~~~~~~kIeVEv~tleea~ea~~~GaDiI~lDn---------------~~~e~l~~~v~~l~~~~~~-~~ 237 (277)
T TIGR01334 174 DWGGAIGRLKQTAPERKITVEADTIEQALTVLQASPDILQLDK---------------FTPQQLHHLHERLKFFDHI-PT 237 (277)
T ss_pred cHHHHHHHHHHhCCCCCEEEECCCHHHHHHHHHcCcCEEEECC---------------CCHHHHHHHHHHHhccCCC-EE
Confidence 477889999988776444 443 5678888643 33 4445555555556544444 32
Q ss_pred E-eeceEEecCCCHHHHHHHHHHHHHcCCcEEeecc
Q 019890 264 T-KTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQ 298 (334)
Q Consensus 264 t-kTgiMVGlGETdEE~~etl~~Lre~gvd~vtigq 298 (334)
+ -||.| + .+.+....+.|+|.+.+|.
T Consensus 238 leasGGI-----~----~~ni~~ya~~GvD~is~ga 264 (277)
T TIGR01334 238 LAAAGGI-----N----PENIADYIEAGIDLFITSA 264 (277)
T ss_pred EEEECCC-----C----HHHHHHHHhcCCCEEEeCc
Confidence 2 23333 3 4566677889999988873
No 475
>cd00953 KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolases found in archaea. This subfamily of enzymes is adapted for high thermostability and shows specificity for non-phosphorylated substrates. The enzyme catalyses the reversible aldol cleavage of 2-keto-3-dexoygluconate to pyruvate and glyceraldehyde, the third step of a modified non-phosphorylated Entner-Doudoroff pathway of glucose oxidation. KDG aldolase shows no significant sequence similarity to microbial 2-keto-3-deoxyphosphogluconate (KDPG) aldolases, and the enzyme shows no activity with glyceraldehyde 3-phosphate as substrate. The enzyme is a tetramer and a member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=30.92 E-value=4.7e+02 Score=24.85 Aligned_cols=48 Identities=10% Similarity=0.266 Sum_probs=30.8
Q ss_pred CCHHHHHHHHHHHHHhCCCcceEeeceEEec-CCCHHHHHHHHHHHHHcCCcEEee
Q 019890 242 ANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC-GETPDQVVSTMEKVRAAGVDVMTF 296 (334)
Q Consensus 242 ~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGl-GETdEE~~etl~~Lre~gvd~vti 296 (334)
-+.+++.++++.+.+.. + .+|+|. +.+-+|.++..+..+++|+|.+-+
T Consensus 49 Lt~eEr~~l~~~~~~~~-~------~vi~gvg~~~~~~ai~~a~~a~~~Gad~v~v 97 (279)
T cd00953 49 LSFQEKLELLKAYSDIT-D------KVIFQVGSLNLEESIELARAAKSFGIYAIAS 97 (279)
T ss_pred CCHHHHHHHHHHHHHHc-C------CEEEEeCcCCHHHHHHHHHHHHHcCCCEEEE
Confidence 35566666776666542 1 267777 356777777777777777776554
No 476
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=30.84 E-value=4.8e+02 Score=24.89 Aligned_cols=56 Identities=23% Similarity=0.351 Sum_probs=35.3
Q ss_pred CCCchhHHHHHHHHHHCCCcEEEEeeecCCCCCCchH---------------HHHHHHHHHHHhhCCCCce
Q 019890 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGS---------------GHFAQTVRKLKELKPNMLI 211 (334)
Q Consensus 156 ~ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga---------------~~fa~lIr~Ik~~~P~i~v 211 (334)
-.+.++-.+.++++.+.|++-+-|-=--.|-+.||.. ..+-+.++++++..+++.+
T Consensus 22 ~P~~~~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~~AL~~G~~~~~~~~~~~~~r~~~~~~p~ 92 (258)
T PRK13111 22 DPDLETSLEIIKALVEAGADIIELGIPFSDPVADGPVIQAASLRALAAGVTLADVFELVREIREKDPTIPI 92 (258)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEECCCCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCE
Confidence 4677888899999999999988773333444556531 2334566666644455443
No 477
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=30.71 E-value=5.4e+02 Score=25.96 Aligned_cols=106 Identities=23% Similarity=0.342 Sum_probs=60.6
Q ss_pred HHHHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhCCCCceee---e------------------ecccccc
Q 019890 163 TNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEA---L------------------VAKSGLN 221 (334)
Q Consensus 163 ~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~P~i~vE~---L------------------l~~ag~d 221 (334)
.+.|.++.++|.=.| .++. .-.+..++.|+++|...|....+- + |.++|+|
T Consensus 51 ~~mAiama~~Gglgv----ih~~----~~~e~q~~~v~~vK~~~~~a~~d~~~~l~V~aavg~~~~~~er~~~L~~agvD 122 (352)
T PF00478_consen 51 SEMAIAMARLGGLGV----IHRN----MSIEEQAEEVKKVKRYYPNASKDEKGRLLVAAAVGTRDDDFERAEALVEAGVD 122 (352)
T ss_dssp HHHHHHHHHTTSEEE----EESS----SCHHHHHHHHHHHHTHHTTHHBHTTSCBCEEEEEESSTCHHHHHHHHHHTT-S
T ss_pred HHHHHHHHHhcCCce----ecCC----CCHHHHHHHHhhhccccccccccccccceEEEEecCCHHHHHHHHHHHHcCCC
Confidence 477888888863222 2332 123456788888887554422211 0 4445555
Q ss_pred ccccchhhHHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCcceEeeceEEecCCCHHHHHHHHHHHHHcCCcEEeec
Q 019890 222 VFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFG 297 (334)
Q Consensus 222 v~~HnlETv~~l~~~Vr~r~~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGlGETdEE~~etl~~Lre~gvd~vtig 297 (334)
++..- .....-+..++.++++|+.+|+ ..+|.|==-|.|-. ++|-+.|+|.|-+|
T Consensus 123 ~ivID------------~a~g~s~~~~~~ik~ik~~~~~-----~~viaGNV~T~e~a----~~L~~aGad~vkVG 177 (352)
T PF00478_consen 123 VIVID------------SAHGHSEHVIDMIKKIKKKFPD-----VPVIAGNVVTYEGA----KDLIDAGADAVKVG 177 (352)
T ss_dssp EEEEE-------------SSTTSHHHHHHHHHHHHHSTT-----SEEEEEEE-SHHHH----HHHHHTT-SEEEES
T ss_pred EEEcc------------ccCccHHHHHHHHHHHHHhCCC-----ceEEecccCCHHHH----HHHHHcCCCEEEEe
Confidence 54311 1233446667899999998875 45666665565544 44777899977776
No 478
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=30.67 E-value=3.6e+02 Score=23.36 Aligned_cols=98 Identities=13% Similarity=0.148 Sum_probs=0.0
Q ss_pred EEeeecCCCCCCchHHHHHHHHHHHHhhCCCCceeeeeccccccccccchh-hHHHHHHhhcC-----------CCCCHH
Q 019890 178 VITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVAKSGLNVFAHNIE-TVEELQSAVRD-----------HRANFK 245 (334)
Q Consensus 178 VLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~P~i~vE~Ll~~ag~dv~~HnlE-Tv~~l~~~Vr~-----------r~~tye 245 (334)
+|.+.-..|.-|.|..-++..++ ++|.+|+.--.. +.+++...+.. -+.+..
T Consensus 4 vvigtv~~D~HdiGk~iv~~~l~----------------~~GfeVi~LG~~v~~e~~v~aa~~~~adiVglS~l~~~~~~ 67 (134)
T TIGR01501 4 IVLGVIGSDCHAVGNKILDHAFT----------------NAGFNVVNLGVLSPQEEFIKAAIETKADAILVSSLYGHGEI 67 (134)
T ss_pred EEEEEecCChhhHhHHHHHHHHH----------------HCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEecccccCHH
Q ss_pred HHHHHHHHHHHhCCCcceEeeceEEecC--CCHHHHHHHHHHHHHcCCcEEe
Q 019890 246 QSLDVLMMAKDYVPAGTLTKTSIMLGCG--ETPDQVVSTMEKVRAAGVDVMT 295 (334)
Q Consensus 246 ~sL~vL~~ak~~~p~Gl~tkTgiMVGlG--ETdEE~~etl~~Lre~gvd~vt 295 (334)
..-++++.+++. |+.-.- +|+|=+ -.++|+.+.-..|+++|||.++
T Consensus 68 ~~~~~~~~l~~~---gl~~~~-vivGG~~vi~~~d~~~~~~~l~~~Gv~~vF 115 (134)
T TIGR01501 68 DCKGLRQKCDEA---GLEGIL-LYVGGNLVVGKQDFPDVEKRFKEMGFDRVF 115 (134)
T ss_pred HHHHHHHHHHHC---CCCCCE-EEecCCcCcChhhhHHHHHHHHHcCCCEEE
No 479
>PLN02334 ribulose-phosphate 3-epimerase
Probab=30.57 E-value=1.2e+02 Score=27.87 Aligned_cols=68 Identities=26% Similarity=0.368 Sum_probs=35.6
Q ss_pred CCchhHHHHHHHHHHCC-CcEEEEeeecCCCCCCchHHHHHHHHHHHHhhCCCCceeee----------eccccccccc
Q 019890 157 PDPDEPTNVAEAIASWG-LDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEAL----------VAKSGLNVFA 224 (334)
Q Consensus 157 ld~~Ep~~~A~av~~~G-lkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~P~i~vE~L----------l~~ag~dv~~ 224 (334)
..+..+.+.++++...| ++||.+-++....-...-...-.+.|+++++..++..+++. +.++|.|.+.
T Consensus 122 ~~~~t~~~~~~~~~~~~~~Dyi~~~~v~pg~~~~~~~~~~~~~i~~~~~~~~~~~I~a~GGI~~e~i~~l~~aGad~vv 200 (229)
T PLN02334 122 LNPGTPVEAVEPVVEKGLVDMVLVMSVEPGFGGQSFIPSMMDKVRALRKKYPELDIEVDGGVGPSTIDKAAEAGANVIV 200 (229)
T ss_pred ECCCCCHHHHHHHHhccCCCEEEEEEEecCCCccccCHHHHHHHHHHHHhCCCCcEEEeCCCCHHHHHHHHHcCCCEEE
Confidence 33444556666666664 99998877763211110001223455666665555444443 5555665543
No 480
>smart00642 Aamy Alpha-amylase domain.
Probab=30.37 E-value=2e+02 Score=25.44 Aligned_cols=56 Identities=11% Similarity=0.218 Sum_probs=39.0
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEeeccCcCCC-----------CCCCccc-ccCCHHHHHHHHHHHHHh
Q 019890 273 GETPDQVVSTMEKVRAAGVDVMTFGQYMRPS-----------KRHMPVS-EYITPEAFERYRALGMEM 328 (334)
Q Consensus 273 GETdEE~~etl~~Lre~gvd~vtigqYlrP~-----------~~h~~v~-~yv~P~~f~~~~~~a~~~ 328 (334)
|-+.+.+.+.|..|+++||+.|-+.+..... ..+..+. +|=+.++|+.+-+.|.+.
T Consensus 15 ~G~~~gi~~~l~yl~~lG~~~I~l~Pi~~~~~~~~~~~gY~~~d~~~i~~~~Gt~~d~~~lv~~~h~~ 82 (166)
T smart00642 15 GGDLQGIIEKLDYLKDLGVTAIWLSPIFESPQGYPSYHGYDISDYKQIDPRFGTMEDFKELVDAAHAR 82 (166)
T ss_pred CcCHHHHHHHHHHHHHCCCCEEEECcceeCCCCCCCCCCcCccccCCCCcccCCHHHHHHHHHHHHHC
Confidence 4568899999999999999999887653211 1112232 455778888887777654
No 481
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=30.34 E-value=3.7e+02 Score=24.58 Aligned_cols=20 Identities=15% Similarity=0.076 Sum_probs=17.1
Q ss_pred CCCHHHHHHHHHHHHHcCCc
Q 019890 273 GETPDQVVSTMEKVRAAGVD 292 (334)
Q Consensus 273 GETdEE~~etl~~Lre~gvd 292 (334)
|+-.-++.+.++.|++.|++
T Consensus 214 G~G~id~~~il~~L~~~gy~ 233 (254)
T TIGR03234 214 GTGEINYRFLFAVLDRLGYD 233 (254)
T ss_pred CCCccCHHHHHHHHHHCCCC
Confidence 67777888899999999988
No 482
>TIGR00677 fadh2_euk methylenetetrahydrofolate reductase, eukaryotic type. This protein is an FAD-containing flavoprotein.
Probab=29.96 E-value=5.1e+02 Score=24.94 Aligned_cols=51 Identities=14% Similarity=0.061 Sum_probs=34.8
Q ss_pred CCchhHHHHHHHHHHCCCcEEEEeeecCC---C---CCCchHHHHHHHHHHHHhhCC
Q 019890 157 PDPDEPTNVAEAIASWGLDYVVITSVDRD---D---LADQGSGHFAQTVRKLKELKP 207 (334)
Q Consensus 157 ld~~Ep~~~A~av~~~GlkeVVLTSv~rd---D---l~d~Ga~~fa~lIr~Ik~~~P 207 (334)
.+..++.+....+.+.|++.|++..+|.. | -+.+...+-.++|+.|++..+
T Consensus 71 ~~~~~l~~~L~~~~~~Gi~niLal~GD~p~~~~~~~~~~~~f~~a~~Li~~i~~~~~ 127 (281)
T TIGR00677 71 MPIEMIDDALERAYSNGIQNILALRGDPPHIGDDWTEVEGGFQYAVDLVKYIRSKYG 127 (281)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCcCHHHHHHHHHHhCC
Confidence 34578888888889999999976666641 1 122334555688888877543
No 483
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=29.92 E-value=2.6e+02 Score=27.45 Aligned_cols=81 Identities=19% Similarity=0.278 Sum_probs=47.9
Q ss_pred HHHHHHHHHHhhCCCCceeee---------eccccccccccchhhHHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCcceE
Q 019890 194 HFAQTVRKLKELKPNMLIEAL---------VAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLT 264 (334)
Q Consensus 194 ~fa~lIr~Ik~~~P~i~vE~L---------l~~ag~dv~~HnlETv~~l~~~Vr~r~~tye~sL~vL~~ak~~~p~Gl~t 264 (334)
.+.+.|+++++..|...||+- ..++|+|++.- | .-+.++--+.++.+++..|. +.+
T Consensus 185 ~i~~ai~~~r~~~~~~kIeVEv~tl~ea~eal~~gaDiI~L-------------D-nm~~e~vk~av~~~~~~~~~-v~i 249 (289)
T PRK07896 185 SVVAALRAVRAAAPDLPCEVEVDSLEQLDEVLAEGAELVLL-------------D-NFPVWQTQEAVQRRDARAPT-VLL 249 (289)
T ss_pred cHHHHHHHHHHhCCCCCEEEEcCCHHHHHHHHHcCCCEEEe-------------C-CCCHHHHHHHHHHHhccCCC-EEE
Confidence 356788888887776545443 45677776441 1 22344444445554444444 332
Q ss_pred -eeceEEecCCCHHHHHHHHHHHHHcCCcEEeecc
Q 019890 265 -KTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQ 298 (334)
Q Consensus 265 -kTgiMVGlGETdEE~~etl~~Lre~gvd~vtigq 298 (334)
-||.| | .+.+..+.+.|+|.+.+|.
T Consensus 250 eaSGGI-----~----~~ni~~yA~tGvD~Is~ga 275 (289)
T PRK07896 250 ESSGGL-----T----LDTAAAYAETGVDYLAVGA 275 (289)
T ss_pred EEECCC-----C----HHHHHHHHhcCCCEEEeCh
Confidence 23333 3 4566678899999999994
No 484
>COG3618 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]
Probab=29.86 E-value=5.4e+02 Score=25.22 Aligned_cols=72 Identities=24% Similarity=0.286 Sum_probs=52.9
Q ss_pred HHHHHHHHHHhCCCcceEeeceEEec-CCC--HHHHHHHHHHHHHc-CCcEEeeccCcCCCCCCCcccccCCHHHHHHHH
Q 019890 247 SLDVLMMAKDYVPAGTLTKTSIMLGC-GET--PDQVVSTMEKVRAA-GVDVMTFGQYMRPSKRHMPVSEYITPEAFERYR 322 (334)
Q Consensus 247 sL~vL~~ak~~~p~Gl~tkTgiMVGl-GET--dEE~~etl~~Lre~-gvd~vtigqYlrP~~~h~~v~~yv~P~~f~~~~ 322 (334)
+.+-+.++.+ .|+ +..|-++.+|+ +++ .+++....+.+.++ |.|++=+| ...||..+-. .|..|.
T Consensus 182 w~~~m~~la~-~pN-v~~KlSG~~~~~~~~w~~~~v~p~~e~~i~~fg~dR~vfG-------SdwPv~~l~~--~~~~~~ 250 (279)
T COG3618 182 WKAALARLAR-RPN-VWAKLSGVYAYSDESWTVEDVRPYVEELIELFGWDRFVFG-------SDWPVTSLES--DFASWV 250 (279)
T ss_pred HHHHHHHHHh-CCC-eEEEEeeecccccCCCCHHHHHHHHHHHHHhcCccceEec-------CCCCcccccC--ChHHHH
Confidence 3333444443 377 89999999999 666 78888888888876 78999888 5577777766 577777
Q ss_pred HHHHHhh
Q 019890 323 ALGMEMV 329 (334)
Q Consensus 323 ~~a~~~~ 329 (334)
....++.
T Consensus 251 ~~~~~~v 257 (279)
T COG3618 251 AATRELV 257 (279)
T ss_pred HHHHHHc
Confidence 7766653
No 485
>PF05378 Hydant_A_N: Hydantoinase/oxoprolinase N-terminal region; InterPro: IPR008040 This domain is found at the N terminus of the hydantoinase/oxoprolinase IPR002821 from INTERPRO family.
Probab=29.86 E-value=1.4e+02 Score=26.67 Aligned_cols=44 Identities=20% Similarity=0.310 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHcCCcEEeeccCcCCCCCCCcccccCCHHHHHHHHHHHHHhh
Q 019890 276 PDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMPVSEYITPEAFERYRALGMEMV 329 (334)
Q Consensus 276 dEE~~etl~~Lre~gvd~vtigqYlrP~~~h~~v~~yv~P~~f~~~~~~a~~~~ 329 (334)
++++.+.++.|++.|++.+-|- -++-|..|+.-.+.+++++++|
T Consensus 133 ~~~v~~~~~~l~~~gv~avAV~----------~~fS~~np~hE~~v~eii~e~g 176 (176)
T PF05378_consen 133 EDEVREALRELKDKGVEAVAVS----------LLFSYRNPEHEQRVAEIIREEG 176 (176)
T ss_pred HHHHHHHHHHHHhCCCCEEEEE----------CccCCCCHHHHHHHHHHHHhcC
Confidence 6889999999999999998884 3445778888888888888764
No 486
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=29.80 E-value=5e+02 Score=24.76 Aligned_cols=48 Identities=17% Similarity=0.182 Sum_probs=35.8
Q ss_pred CCCchhHHHHHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhC
Q 019890 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELK 206 (334)
Q Consensus 156 ~ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~ 206 (334)
..|.+.+.+.|+...+.|...|-|=+... ++...+.+..+|+.|++..
T Consensus 21 ~~d~~~i~~~A~~~~~~GAdiIDVg~~~~---~~eE~~r~~~~v~~l~~~~ 68 (261)
T PRK07535 21 AKDAAFIQKLALKQAEAGADYLDVNAGTA---VEEEPETMEWLVETVQEVV 68 (261)
T ss_pred cCCHHHHHHHHHHHHHCCCCEEEECCCCC---chhHHHHHHHHHHHHHHhC
Confidence 46899999999999999999887744322 2334567888888887653
No 487
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=29.49 E-value=1.3e+02 Score=27.29 Aligned_cols=52 Identities=19% Similarity=0.383 Sum_probs=33.8
Q ss_pred HHHHHHHHHCCCcEEEEeeecC---CCCC--------CchHHHHHHHHHHHHhhCCCCceeee
Q 019890 163 TNVAEAIASWGLDYVVITSVDR---DDLA--------DQGSGHFAQTVRKLKELKPNMLIEAL 214 (334)
Q Consensus 163 ~~~A~av~~~GlkeVVLTSv~r---dDl~--------d~Ga~~fa~lIr~Ik~~~P~i~vE~L 214 (334)
.++|+.+...|+++++|.=.+. .|+. |-|...-..+.+.|++.+|++.++..
T Consensus 34 ~evak~La~~GVg~i~lvD~d~ve~snL~rqfl~~~~diG~~Ka~a~~~~L~~lNp~v~i~~~ 96 (197)
T cd01492 34 AEIAKNLVLSGIGSLTILDDRTVTEEDLGAQFLIPAEDLGQNRAEASLERLRALNPRVKVSVD 96 (197)
T ss_pred HHHHHHHHHcCCCEEEEEECCcccHhhCCCCccccHHHcCchHHHHHHHHHHHHCCCCEEEEE
Confidence 3678888999999998854331 1111 22333344556778888999888766
No 488
>PRK02227 hypothetical protein; Provisional
Probab=29.48 E-value=4.9e+02 Score=24.94 Aligned_cols=152 Identities=20% Similarity=0.300 Sum_probs=82.6
Q ss_pred cCCCCCCCCCCchhHHHHHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhCCCCc-eeeeeccc--------
Q 019890 148 VKTSRAPPPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNML-IEALVAKS-------- 218 (334)
Q Consensus 148 V~~~r~p~~ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~P~i~-vE~Ll~~a-------- 218 (334)
|+-.-+..+.++.++..-+..+...|++||-+ |.-...-.+.-.+.+..++++++...++.. |-+++.+.
T Consensus 55 vSAtiGD~p~~p~~~~~aa~~~a~~GvDyVKv-Gl~~~~~~~~~~~~~~~v~~a~~~~~~~~~vVav~yaD~~r~~~~~~ 133 (238)
T PRK02227 55 VSATIGDVPYKPGTISLAALGAAATGADYVKV-GLYGGKTAEEAVEVMKAVVRAVKDLDPGKIVVAAGYADAHRVGSVSP 133 (238)
T ss_pred ceeeccCCCCCchHHHHHHHHHHhhCCCEEEE-cCCCCCcHHHHHHHHHHHHHhhhhcCCCCeEEEEEecccccccCCCh
Confidence 44333445677788888888889999999866 221100111112345556666766555532 23333332
Q ss_pred ----------cccccccchhhH----HHHHHhhcCCCCCHHHHHHHHHHHHHhCCCcceEeeceEEec-CCCHHHHHHHH
Q 019890 219 ----------GLNVFAHNIETV----EELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC-GETPDQVVSTM 283 (334)
Q Consensus 219 ----------g~dv~~HnlETv----~~l~~~Vr~r~~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGl-GETdEE~~etl 283 (334)
|.+..- ++|. .+|+..| +.++--+.++.+|+ .|+|.|| |-=. .+.+
T Consensus 134 ~~l~~~a~~aGf~g~M--lDTa~Kdg~~Lfd~l-----~~~~L~~Fv~~ar~---------~Gl~~gLAGSL~---~~di 194 (238)
T PRK02227 134 LSLPAIAADAGFDGAM--LDTAIKDGKSLFDHM-----DEEELAEFVAEARS---------HGLMSALAGSLK---FEDI 194 (238)
T ss_pred HHHHHHHHHcCCCEEE--EecccCCCcchHhhC-----CHHHHHHHHHHHHH---------cccHhHhcccCc---hhhH
Confidence 221110 2332 2455443 35566666777766 3467788 5433 3456
Q ss_pred HHHHHcCCcEEeeccCc-CCCCCCCcccccCCHHHHHHHHH
Q 019890 284 EKVRAAGVDVMTFGQYM-RPSKRHMPVSEYITPEAFERYRA 323 (334)
Q Consensus 284 ~~Lre~gvd~vtigqYl-rP~~~h~~v~~yv~P~~f~~~~~ 323 (334)
..|+.++.|++.|=-=+ .-..| ..-+.|+....|++
T Consensus 195 p~L~~l~pD~lGfRgavC~g~dR----~~~id~~~V~~~~~ 231 (238)
T PRK02227 195 PALKRLGPDILGVRGAVCGGGDR----TGRIDPELVAELRE 231 (238)
T ss_pred HHHHhcCCCEEEechhccCCCCc----ccccCHHHHHHHHH
Confidence 67899999999984322 11112 23456766666654
No 489
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=29.42 E-value=1.2e+02 Score=32.00 Aligned_cols=61 Identities=18% Similarity=0.216 Sum_probs=42.6
Q ss_pred CCchhHHHHHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhCCC-Cceee---e-------ecccccccc
Q 019890 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPN-MLIEA---L-------VAKSGLNVF 223 (334)
Q Consensus 157 ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~P~-i~vE~---L-------l~~ag~dv~ 223 (334)
..+++....++++.+.|++.|+|++-+ +......+.|++|++..|+ +.|-. + +.++|.|.+
T Consensus 238 v~~~~~~~ra~~Lv~aGvd~i~vd~a~------g~~~~~~~~i~~ir~~~~~~~~V~aGnV~t~e~a~~li~aGAd~I 309 (502)
T PRK07107 238 INTRDYAERVPALVEAGADVLCIDSSE------GYSEWQKRTLDWIREKYGDSVKVGAGNVVDREGFRYLAEAGADFV 309 (502)
T ss_pred cChhhHHHHHHHHHHhCCCeEeecCcc------cccHHHHHHHHHHHHhCCCCceEEeccccCHHHHHHHHHcCCCEE
Confidence 344567788999999999999986332 2234567899999998874 43322 1 677888765
No 490
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=29.40 E-value=2.7e+02 Score=27.62 Aligned_cols=51 Identities=20% Similarity=0.229 Sum_probs=33.7
Q ss_pred HHHHHHHHCCCcEEEEeeecCCCC-----------CCchHHHHHHHHHHHHhhCCCCceeee
Q 019890 164 NVAEAIASWGLDYVVITSVDRDDL-----------ADQGSGHFAQTVRKLKELKPNMLIEAL 214 (334)
Q Consensus 164 ~~A~av~~~GlkeVVLTSv~rdDl-----------~d~Ga~~fa~lIr~Ik~~~P~i~vE~L 214 (334)
.+|+.+...|++++.|.=.|.-+. .|-|......+.+.|++.+|.+.|+.+
T Consensus 42 ~~a~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~v~v~~~ 103 (355)
T PRK05597 42 PALLYLAGAGVGHITIIDDDTVDLSNLHRQVIHSTAGVGQPKAESAREAMLALNPDVKVTVS 103 (355)
T ss_pred HHHHHHHHcCCCeEEEEeCCEEcccccccCcccChhHCCChHHHHHHHHHHHHCCCcEEEEE
Confidence 567888999999988844332111 122333445567788888999888776
No 491
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=29.37 E-value=1.2e+02 Score=31.64 Aligned_cols=44 Identities=14% Similarity=0.231 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHhCCCcceEeeceEEecCCCHHHHHHHHHHHHHcCCcEEeec
Q 019890 245 KQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFG 297 (334)
Q Consensus 245 e~sL~vL~~ak~~~p~Gl~tkTgiMVGlGETdEE~~etl~~Lre~gvd~vtig 297 (334)
+..++.++++|+.+|+ .-+|+|++-|.|+..++ .++|+|.|-+|
T Consensus 251 ~~~~~~i~~i~~~~~~-----~~vi~g~~~t~~~~~~l----~~~G~d~i~vg 294 (475)
T TIGR01303 251 VKMISAIKAVRALDLG-----VPIVAGNVVSAEGVRDL----LEAGANIIKVG 294 (475)
T ss_pred HHHHHHHHHHHHHCCC-----CeEEEeccCCHHHHHHH----HHhCCCEEEEC
Confidence 6778899999987776 46889999999877654 47999988765
No 492
>COG1060 ThiH Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes [Coenzyme metabolism / General function prediction only]
Probab=29.29 E-value=63 Score=32.65 Aligned_cols=87 Identities=11% Similarity=0.105 Sum_probs=46.6
Q ss_pred CCCCHHHHHHHHHHHHHhCCCcceEeeceEE--ec--CCCHHHHHHHHHHHHHcCCcEEeecc--CcCCC-CCCCccccc
Q 019890 240 HRANFKQSLDVLMMAKDYVPAGTLTKTSIML--GC--GETPDQVVSTMEKVRAAGVDVMTFGQ--YMRPS-KRHMPVSEY 312 (334)
Q Consensus 240 r~~tye~sL~vL~~ak~~~p~Gl~tkTgiMV--Gl--GETdEE~~etl~~Lre~gvd~vtigq--YlrP~-~~h~~v~~y 312 (334)
+..+++.+.+.++.+|+.+|+ +.+++==.. -+ -+..--..+.|+.|+++|.|.++.++ |+..+ .+++. -.-
T Consensus 118 p~~~~~y~~~~~~~ik~~~p~-~~i~a~s~~ei~~~~~~~~~s~~E~l~~Lk~aGldsmpg~~aeil~e~vr~~~~-p~K 195 (370)
T COG1060 118 PELSLEYYEELFRTIKEEFPD-LHIHALSAGEILFLAREGGLSYEEVLKRLKEAGLDSMPGGGAEILSEEVRKIHC-PPK 195 (370)
T ss_pred CCcchHHHHHHHHHHHHhCcc-hhhcccCHHHhHHHHhccCCCHHHHHHHHHHcCCCcCcCcceeechHHHHHhhC-CCC
Confidence 345555666777777776665 544321100 00 12222245566677788888888875 34333 12222 445
Q ss_pred CCHHHHHHHHHHHHHh
Q 019890 313 ITPEAFERYRALGMEM 328 (334)
Q Consensus 313 v~P~~f~~~~~~a~~~ 328 (334)
..|+...+--+.|-++
T Consensus 196 ~~~~~wle~~~~Ah~l 211 (370)
T COG1060 196 KSPEEWLEIHERAHRL 211 (370)
T ss_pred CCHHHHHHHHHHHHHc
Confidence 5666666666666666
No 493
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=29.25 E-value=4.6e+02 Score=25.22 Aligned_cols=148 Identities=16% Similarity=0.158 Sum_probs=75.6
Q ss_pred HHHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhCCCCceeee---------ecccccc-ccccchhhHHH-
Q 019890 164 NVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEAL---------VAKSGLN-VFAHNIETVEE- 232 (334)
Q Consensus 164 ~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~P~i~vE~L---------l~~ag~d-v~~HnlETv~~- 232 (334)
.+++.+...|+++|+|=..+ ...+...+..+++++...--...|.+- +.|+|.+ ++--+++|++.
T Consensus 30 ~~~E~~a~~GfD~v~iD~EH----g~~~~~~l~~~i~a~~~~g~~~lVRvp~~~~~~i~r~LD~GA~GIivP~V~saeeA 105 (267)
T PRK10128 30 YMAEIAATSGYDWLLIDGEH----APNTIQDLYHQLQAIAPYASQPVIRPVEGSKPLIKQVLDIGAQTLLIPMVDTAEQA 105 (267)
T ss_pred HHHHHHHHcCCCEEEEcccc----CCCCHHHHHHHHHHHHhcCCCeEEECCCCCHHHHHHHhCCCCCeeEecCcCCHHHH
Confidence 35556678899999985443 223445677777777643111112221 6677776 33334455443
Q ss_pred --HHHhhc-C----CCC--------CHHHHHHHHHHHHHhCCCcceEeeceEEecCCCHHHHHHHHHHHHHcCCcEEeec
Q 019890 233 --LQSAVR-D----HRA--------NFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFG 297 (334)
Q Consensus 233 --l~~~Vr-~----r~~--------tye~sL~vL~~ak~~~p~Gl~tkTgiMVGlGETdEE~~etl~~Lre~gvd~vtig 297 (334)
+-+..+ + |.. .|... -+.+...+. .+-.-+| -||.+-+.+.=+.+.-=|+|.+.+|
T Consensus 106 ~~~V~a~rYpP~G~Rg~g~~~~r~~~yg~~---~~y~~~an~---~~~vi~q---iEt~~a~~n~~~I~~~~gvd~i~~G 176 (267)
T PRK10128 106 RQVVSATRYPPYGERGVGASVARAARWGRI---ENYMAQAND---SLCLLVQ---VESKTALDNLDEILDVEGIDGVFIG 176 (267)
T ss_pred HHHHHhcCCCCCCCCCCCCccchhhccCCh---HHHHHHhcc---ccEEEEE---ECCHHHHHhHHHHhCCCCCCEEEEC
Confidence 333322 1 111 12211 122222211 1333333 4999988777766666679999999
Q ss_pred cC-cCCCCCCCcccccCCHHHHHHHHHHHH
Q 019890 298 QY-MRPSKRHMPVSEYITPEAFERYRALGM 326 (334)
Q Consensus 298 qY-lrP~~~h~~v~~yv~P~~f~~~~~~a~ 326 (334)
++ |.=+- .++ -++-+|+..+.++++..
T Consensus 177 ~~Dls~sl-g~~-~~~~~pev~~ai~~v~~ 204 (267)
T PRK10128 177 PADLSASL-GYP-DNAGHPEVQRIIETSIR 204 (267)
T ss_pred HHHHHHHc-CCC-CCCCCHHHHHHHHHHHH
Confidence 76 11011 111 23456766555555443
No 494
>TIGR02321 Pphn_pyruv_hyd phosphonopyruvate hydrolase. This family consists of phosphonopyruvate hydrolase, an enzyme closely related to phosphoenolpyruvate phosphomutase. It cleaves the direct C-P bond of phosphonopyruvate. The characterized example is from Variovorax sp. Pal2.
Probab=29.24 E-value=4.2e+02 Score=25.84 Aligned_cols=77 Identities=17% Similarity=0.194 Sum_probs=59.6
Q ss_pred CCCHHHHHHHHHHHHHhCCCcceEeeceEEecCCCHHHHHHHHHHHHHcCCcEEeeccCcCCCC-CCC-cc-cccCCHHH
Q 019890 241 RANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRPSK-RHM-PV-SEYITPEA 317 (334)
Q Consensus 241 ~~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGlGETdEE~~etl~~Lre~gvd~vtigqYlrP~~-~h~-~v-~~yv~P~~ 317 (334)
.-++++.++.++++.... + +.+..|+=-|||++. ++.++.+.+.++|+.-++|=--..|.+ -|+ +- ...+++++
T Consensus 57 ~l~~~e~~~~~~~I~~~~-~-lPv~aD~d~GyG~~~-~v~~tV~~~~~aGvagi~IEDq~~pk~cg~~~~g~~~l~~~ee 133 (290)
T TIGR02321 57 ILSMSTHLEMMRAIASTV-S-IPLIADIDTGFGNAV-NVHYVVPQYEAAGASAIVMEDKTFPKDTSLRTDGRQELVRIEE 133 (290)
T ss_pred cCCHHHHHHHHHHHHhcc-C-CCEEEECCCCCCCcH-HHHHHHHHHHHcCCeEEEEeCCCCCcccccccCCCccccCHHH
Confidence 357888888888888765 3 678899999999999 699999999999999999976554543 344 23 45678877
Q ss_pred HHH
Q 019890 318 FER 320 (334)
Q Consensus 318 f~~ 320 (334)
|..
T Consensus 134 ~~~ 136 (290)
T TIGR02321 134 FQG 136 (290)
T ss_pred HHH
Confidence 544
No 495
>PF08543 Phos_pyr_kin: Phosphomethylpyrimidine kinase; InterPro: IPR013749 This enzyme 2.7.4.7 from EC is part of the Thiamine pyrophosphate (TPP) synthesis pathway, TPP is an essential cofactor for many enzymes []. ; PDB: 2DDW_B 2DDO_B 2DDM_A 3IBQ_A 3H74_A 3HYO_A 1UB0_A 1VI9_D 1TD2_B 2PHP_D ....
Probab=29.22 E-value=65 Score=29.99 Aligned_cols=28 Identities=25% Similarity=0.273 Sum_probs=24.3
Q ss_pred CCchhHHHHHHHHHHCCCcEEEEeeecC
Q 019890 157 PDPDEPTNVAEAIASWGLDYVVITSVDR 184 (334)
Q Consensus 157 ld~~Ep~~~A~av~~~GlkeVVLTSv~r 184 (334)
.+.+++.+.++++.++|.+.|+|||++.
T Consensus 139 ~~~~~~~~~~~~l~~~G~~~VvItg~~~ 166 (246)
T PF08543_consen 139 NSEEDIEEAAKALLALGPKNVVITGGHL 166 (246)
T ss_dssp SSHHHHHHHHHHHHHTS-SEEEEEEEEG
T ss_pred CChHhHHHHHHHHHHhCCceEEEeeecc
Confidence 3778999999999999999999999985
No 496
>PRK05660 HemN family oxidoreductase; Provisional
Probab=29.15 E-value=5.9e+02 Score=25.37 Aligned_cols=63 Identities=19% Similarity=0.212 Sum_probs=43.8
Q ss_pred CCCCHHHHHHHHHHHHHhCCCcceEeeceEEe-----------cCC---CHHHHHHHHHHHHHcCCcEEeeccCcCCC
Q 019890 240 HRANFKQSLDVLMMAKDYVPAGTLTKTSIMLG-----------CGE---TPDQVVSTMEKVRAAGVDVMTFGQYMRPS 303 (334)
Q Consensus 240 r~~tye~sL~vL~~ak~~~p~Gl~tkTgiMVG-----------lGE---TdEE~~etl~~Lre~gvd~vtigqYlrP~ 303 (334)
++.+.+++.+.++.+.+..|+. +.-..+++- +.+ ..+.+....+.|.+.|+....+..|.+|.
T Consensus 169 pgqt~~~~~~~l~~~~~l~p~~-is~y~l~~~~gT~l~~~~~~~~~~~~~~~~~~~~~~~L~~~Gy~~yei~~fa~~~ 245 (378)
T PRK05660 169 PDQSLEEALDDLRQAIALNPPH-LSWYQLTIEPNTLFGSRPPVLPDDDALWDIFEQGHQLLTAAGYQQYETSAYAKPG 245 (378)
T ss_pred CCCCHHHHHHHHHHHHhcCCCe-EEeeccEeccCCcccccCCCCcCHHHHHHHHHHHHHHHHHcCCcEeecccccCCC
Confidence 5788999999999999988873 333333331 111 12244456678999999999999999986
No 497
>PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B ....
Probab=28.93 E-value=51 Score=31.14 Aligned_cols=32 Identities=22% Similarity=0.357 Sum_probs=15.8
Q ss_pred eeceEEecCCCHHHHHHHHHHHHHcCCcEEee
Q 019890 265 KTSIMLGCGETPDQVVSTMEKVRAAGVDVMTF 296 (334)
Q Consensus 265 kTgiMVGlGETdEE~~etl~~Lre~gvd~vti 296 (334)
+|+..+.-++..+|-++=.+--.++|.|.+.+
T Consensus 143 RTDa~~~~~~~~deaI~R~~aY~eAGAD~ifi 174 (238)
T PF13714_consen 143 RTDAFLRAEEGLDEAIERAKAYAEAGADMIFI 174 (238)
T ss_dssp EECHHCHHHHHHHHHHHHHHHHHHTT-SEEEE
T ss_pred eccccccCCCCHHHHHHHHHHHHHcCCCEEEe
Confidence 55544333344444555555555666666655
No 498
>TIGR02317 prpB methylisocitrate lyase. Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus.
Probab=28.76 E-value=2.5e+02 Score=27.32 Aligned_cols=52 Identities=15% Similarity=0.087 Sum_probs=31.2
Q ss_pred CHHHHHHHHHHHHHhC--CCcceE--eeceEEecCCCHHHHHHHHHHHHHcCCcEEeec
Q 019890 243 NFKQSLDVLMMAKDYV--PAGTLT--KTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFG 297 (334)
Q Consensus 243 tye~sL~vL~~ak~~~--p~Gl~t--kTgiMVGlGETdEE~~etl~~Lre~gvd~vtig 297 (334)
+.++..+.|+.+++.. ++ +.+ +|+-..+. ..+|-++=.+.-.++|.|.+.+-
T Consensus 126 ~~ee~~~kI~Aa~~a~~~~d-~~IiARTDa~~~~--g~deAI~Ra~ay~~AGAD~vfi~ 181 (285)
T TIGR02317 126 SREEMVDKIAAAVDAKRDED-FVIIARTDARAVE--GLDAAIERAKAYVEAGADMIFPE 181 (285)
T ss_pred CHHHHHHHHHHHHHhccCCC-EEEEEEcCccccc--CHHHHHHHHHHHHHcCCCEEEeC
Confidence 3444455555555432 33 332 67766433 36677777777888899988873
No 499
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=28.72 E-value=3.6e+02 Score=24.97 Aligned_cols=70 Identities=24% Similarity=0.407 Sum_probs=42.4
Q ss_pred CCchhHHHHHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhCCCCce--eee----------eccccccccc
Q 019890 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLI--EAL----------VAKSGLNVFA 224 (334)
Q Consensus 157 ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~P~i~v--E~L----------l~~ag~dv~~ 224 (334)
.|+..+.++++.+.+.|++++.+==-|..-.|..... .+.|++|++..|++.+ ++. +.++|.|.+.
T Consensus 16 ~d~~~l~~~~~~l~~~~~~~~H~DimDg~fvpn~~~G--~~~v~~lr~~~~~~~lDvHLm~~~p~~~i~~~~~~Gad~it 93 (228)
T PTZ00170 16 ADFSKLADEAQDVLSGGADWLHVDVMDGHFVPNLSFG--PPVVKSLRKHLPNTFLDCHLMVSNPEKWVDDFAKAGASQFT 93 (228)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEEecccCccCCCcCcC--HHHHHHHHhcCCCCCEEEEECCCCHHHHHHHHHHcCCCEEE
Confidence 4667888899999999999887722221111221111 4678888887666433 332 5667777665
Q ss_pred cchh
Q 019890 225 HNIE 228 (334)
Q Consensus 225 HnlE 228 (334)
-+.|
T Consensus 94 vH~e 97 (228)
T PTZ00170 94 FHIE 97 (228)
T ss_pred Eecc
Confidence 5544
No 500
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=28.65 E-value=1.5e+02 Score=24.87 Aligned_cols=51 Identities=27% Similarity=0.444 Sum_probs=29.4
Q ss_pred HHHHHHHHCCCcEEEEeeecCCCC-----------CCchHHHHHHHHHHHHhhCCCCceeee
Q 019890 164 NVAEAIASWGLDYVVITSVDRDDL-----------ADQGSGHFAQTVRKLKELKPNMLIEAL 214 (334)
Q Consensus 164 ~~A~av~~~GlkeVVLTSv~rdDl-----------~d~Ga~~fa~lIr~Ik~~~P~i~vE~L 214 (334)
++|+.+...|+++++|.=.+.-+. .|-|......+.+.|++.+|++.++.+
T Consensus 13 ~ia~~L~~~Gv~~i~ivD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~~p~v~i~~~ 74 (143)
T cd01483 13 EIALNLARSGVGKITLIDFDTVELSNLNRQFLARQADIGKPKAEVAARRLNELNPGVNVTAV 74 (143)
T ss_pred HHHHHHHHCCCCEEEEEcCCCcCcchhhccccCChhHCCChHHHHHHHHHHHHCCCcEEEEE
Confidence 578889999999988854332111 111322333445556666777655554
Done!