Query 019890
Match_columns 334
No_of_seqs 368 out of 1793
Neff 5.5
Searched_HMMs 29240
Date Mon Mar 25 08:38:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019890.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019890hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2qgq_A Protein TM_1862; alpha- 99.9 6.7E-24 2.3E-28 201.3 17.9 185 129-319 4-214 (304)
2 3t7v_A Methylornithine synthas 99.9 1.6E-22 5.5E-27 194.2 18.2 189 130-328 62-268 (350)
3 3iix_A Biotin synthetase, puta 99.9 3.5E-20 1.2E-24 176.6 21.1 187 131-328 55-259 (348)
4 1r30_A Biotin synthase; SAM ra 99.8 9.6E-20 3.3E-24 176.5 21.6 193 129-328 65-276 (369)
5 1olt_A Oxygen-independent copr 99.6 4.1E-15 1.4E-19 148.5 15.4 168 129-305 53-249 (457)
6 1tv8_A MOAA, molybdenum cofact 99.5 9.1E-13 3.1E-17 125.5 17.9 190 116-320 5-218 (340)
7 3c8f_A Pyruvate formate-lyase 99.4 4E-12 1.4E-16 113.2 14.6 189 129-328 20-239 (245)
8 2yx0_A Radical SAM enzyme; pre 99.3 5.7E-11 1.9E-15 113.4 14.3 181 137-327 79-304 (342)
9 2z2u_A UPF0026 protein MJ0257; 99.1 3.3E-10 1.1E-14 106.3 10.5 184 131-327 53-282 (311)
10 3rfa_A Ribosomal RNA large sub 98.7 3.3E-07 1.1E-11 90.9 15.5 187 132-328 118-337 (404)
11 2a5h_A L-lysine 2,3-aminomutas 98.6 4.2E-07 1.4E-11 89.9 14.6 151 130-297 116-290 (416)
12 3can_A Pyruvate-formate lyase- 97.7 0.00031 1.1E-08 60.4 11.0 149 153-328 12-174 (182)
13 2cw6_A Hydroxymethylglutaryl-C 97.0 0.0034 1.2E-07 59.0 10.2 151 155-321 22-190 (298)
14 4fhd_A Spore photoproduct lyas 96.7 0.0029 1E-07 61.9 7.4 159 132-297 110-295 (368)
15 1ydn_A Hydroxymethylglutaryl-C 96.6 0.025 8.5E-07 52.8 12.6 134 156-297 22-175 (295)
16 1ydo_A HMG-COA lyase; TIM-barr 96.2 0.027 9.1E-07 53.5 10.8 148 155-321 23-191 (307)
17 2ftp_A Hydroxymethylglutaryl-C 96.2 0.048 1.6E-06 51.3 12.1 134 155-297 25-179 (302)
18 3ewb_X 2-isopropylmalate synth 95.2 0.26 9E-06 46.3 13.0 143 156-321 23-184 (293)
19 3eeg_A 2-isopropylmalate synth 94.4 0.22 7.4E-06 47.6 10.3 146 156-321 24-185 (325)
20 3ivs_A Homocitrate synthase, m 94.0 0.35 1.2E-05 48.0 11.3 147 155-321 56-214 (423)
21 3ble_A Citramalate synthase fr 93.8 0.26 8.8E-06 47.2 9.5 143 156-321 37-203 (337)
22 3rmj_A 2-isopropylmalate synth 93.3 0.73 2.5E-05 44.8 11.9 143 156-321 30-191 (370)
23 1nvm_A HOA, 4-hydroxy-2-oxoval 92.4 0.29 9.8E-06 46.8 7.6 125 155-297 25-169 (345)
24 2nx9_A Oxaloacetate decarboxyl 92.3 0.8 2.8E-05 45.9 11.0 135 156-297 26-178 (464)
25 2ztj_A Homocitrate synthase; ( 91.4 0.97 3.3E-05 43.9 10.2 143 156-320 21-177 (382)
26 1rqb_A Transcarboxylase 5S sub 90.9 3.1 0.00011 42.5 13.7 135 156-297 43-195 (539)
27 4e38_A Keto-hydroxyglutarate-a 83.6 11 0.00037 34.3 11.3 105 156-299 42-156 (232)
28 3no5_A Uncharacterized protein 83.2 2.1 7E-05 40.1 6.5 59 155-213 25-83 (275)
29 3e96_A Dihydrodipicolinate syn 81.7 5.6 0.00019 37.4 9.0 72 242-327 62-135 (316)
30 3chv_A Prokaryotic domain of u 81.2 2.7 9.3E-05 39.5 6.5 59 155-213 29-87 (284)
31 3dxi_A Putative aldolase; TIM 81.0 5.6 0.00019 37.8 8.8 131 156-297 20-163 (320)
32 2y7e_A 3-keto-5-aminohexanoate 78.1 3 0.0001 39.1 5.8 59 155-213 29-87 (282)
33 2wje_A CPS4B, tyrosine-protein 75.1 5.1 0.00017 35.7 6.2 48 248-297 151-201 (247)
34 3c6c_A 3-keto-5-aminohexanoate 74.0 5.5 0.00019 38.0 6.4 59 155-213 43-102 (316)
35 3bg3_A Pyruvate carboxylase, m 73.3 20 0.0007 37.7 11.1 149 156-320 121-294 (718)
36 2r91_A 2-keto-3-deoxy-(6-phosp 72.7 25 0.00087 32.2 10.6 69 242-327 48-120 (286)
37 1qop_A Tryptophan synthase alp 71.7 15 0.00051 33.4 8.7 56 157-212 28-98 (268)
38 1vhc_A Putative KHG/KDPG aldol 71.0 47 0.0016 29.6 11.6 103 157-298 26-138 (224)
39 1mxs_A KDPG aldolase; 2-keto-3 70.5 40 0.0014 30.0 11.0 103 157-298 35-147 (225)
40 2yci_X 5-methyltetrahydrofolat 70.3 59 0.002 29.9 12.4 128 156-290 30-193 (271)
41 3d0c_A Dihydrodipicolinate syn 69.7 21 0.00072 33.4 9.4 72 242-327 62-135 (314)
42 1eye_A DHPS 1, dihydropteroate 69.6 36 0.0012 31.6 10.9 130 155-289 24-199 (280)
43 1zlp_A PSR132, petal death pro 69.0 31 0.001 32.8 10.4 77 241-319 82-159 (318)
44 3na8_A Putative dihydrodipicol 68.5 23 0.00079 33.1 9.4 52 242-297 74-126 (315)
45 3hq1_A 2-isopropylmalate synth 67.9 26 0.0009 36.5 10.4 145 155-320 88-265 (644)
46 3flu_A DHDPS, dihydrodipicolin 67.7 26 0.00091 32.3 9.5 72 242-327 57-131 (297)
47 2nuw_A 2-keto-3-deoxygluconate 67.7 27 0.00094 32.1 9.6 69 242-327 49-121 (288)
48 1w3i_A EDA, 2-keto-3-deoxy glu 66.9 27 0.00093 32.2 9.4 69 242-327 49-121 (293)
49 1h7n_A 5-aminolaevulinic acid 66.8 8.9 0.0003 37.0 6.1 121 155-299 64-207 (342)
50 3tak_A DHDPS, dihydrodipicolin 66.7 25 0.00087 32.3 9.2 72 242-327 51-125 (291)
51 3qze_A DHDPS, dihydrodipicolin 66.3 29 0.00098 32.5 9.5 72 242-327 73-147 (314)
52 1h5y_A HISF; histidine biosynt 66.2 47 0.0016 28.5 10.4 46 158-206 31-76 (253)
53 3cpr_A Dihydrodipicolinate syn 66.2 28 0.00095 32.3 9.4 73 241-327 65-140 (304)
54 1xky_A Dihydrodipicolinate syn 65.9 28 0.00097 32.2 9.4 51 242-296 62-113 (301)
55 3b4u_A Dihydrodipicolinate syn 65.8 36 0.0012 31.3 10.1 52 242-297 53-105 (294)
56 2ehh_A DHDPS, dihydrodipicolin 65.2 32 0.0011 31.7 9.5 51 242-296 50-101 (294)
57 3si9_A DHDPS, dihydrodipicolin 65.1 30 0.001 32.5 9.4 52 242-297 72-124 (315)
58 3daq_A DHDPS, dihydrodipicolin 64.7 30 0.001 31.9 9.2 72 242-327 52-126 (292)
59 1pii_A N-(5'phosphoribosyl)ant 64.4 18 0.00063 35.9 8.1 136 169-322 126-300 (452)
60 2yxg_A DHDPS, dihydrodipicolin 64.1 30 0.001 31.8 9.1 51 242-296 50-101 (289)
61 1f6k_A N-acetylneuraminate lya 64.0 30 0.001 31.8 9.1 72 242-327 54-128 (293)
62 2vc6_A MOSA, dihydrodipicolina 64.0 33 0.0011 31.5 9.4 51 242-296 50-101 (292)
63 3eb2_A Putative dihydrodipicol 63.7 23 0.00079 32.9 8.3 51 242-296 54-105 (300)
64 1aj0_A DHPS, dihydropteroate s 63.6 28 0.00094 32.4 8.8 130 156-289 34-207 (282)
65 2rfg_A Dihydrodipicolinate syn 62.9 31 0.0011 31.9 9.0 51 242-296 50-101 (297)
66 3lot_A Uncharacterized protein 62.8 13 0.00046 35.2 6.5 56 155-211 27-83 (314)
67 3dz1_A Dihydrodipicolinate syn 62.8 36 0.0012 31.7 9.5 71 242-327 58-130 (313)
68 3fkr_A L-2-keto-3-deoxyarabona 62.8 38 0.0013 31.5 9.6 51 242-296 58-109 (309)
69 1wbh_A KHG/KDPG aldolase; lyas 62.3 61 0.0021 28.5 10.5 104 156-298 24-137 (214)
70 3m5v_A DHDPS, dihydrodipicolin 62.1 36 0.0012 31.5 9.3 53 242-297 57-110 (301)
71 2r8w_A AGR_C_1641P; APC7498, d 62.0 32 0.0011 32.5 9.0 51 242-296 84-135 (332)
72 2v9d_A YAGE; dihydrodipicolini 61.8 32 0.0011 32.7 9.0 51 242-296 81-132 (343)
73 1w5q_A Delta-aminolevulinic ac 61.5 6.9 0.00024 37.6 4.2 123 156-299 62-202 (337)
74 2wkj_A N-acetylneuraminate lya 61.2 34 0.0012 31.7 9.0 51 242-296 61-112 (303)
75 3s5o_A 4-hydroxy-2-oxoglutarat 61.1 46 0.0016 30.9 9.9 51 242-296 64-115 (307)
76 3l21_A DHDPS, dihydrodipicolin 60.9 28 0.00095 32.4 8.3 52 242-297 65-117 (304)
77 1o5k_A DHDPS, dihydrodipicolin 60.8 32 0.0011 32.0 8.7 51 242-296 62-113 (306)
78 2e6f_A Dihydroorotate dehydrog 59.9 17 0.00057 33.4 6.6 52 243-298 144-196 (314)
79 3obk_A Delta-aminolevulinic ac 59.2 10 0.00034 36.8 4.9 132 147-299 60-210 (356)
80 2vp8_A Dihydropteroate synthas 59.1 20 0.00068 34.1 7.0 58 156-213 61-122 (318)
81 2dqw_A Dihydropteroate synthas 58.9 87 0.003 29.3 11.3 126 156-289 48-219 (294)
82 3inp_A D-ribulose-phosphate 3- 58.2 9.1 0.00031 35.0 4.3 135 156-300 36-226 (246)
83 1pv8_A Delta-aminolevulinic ac 58.1 11 0.00037 36.2 4.9 125 155-300 54-197 (330)
84 1xi3_A Thiamine phosphate pyro 56.9 60 0.0021 27.4 9.3 39 161-205 27-65 (215)
85 2ojp_A DHDPS, dihydrodipicolin 56.9 30 0.001 31.8 7.7 51 242-296 51-102 (292)
86 3hbl_A Pyruvate carboxylase; T 56.5 63 0.0021 35.8 11.3 136 156-297 551-712 (1150)
87 1xg4_A Probable methylisocitra 56.1 68 0.0023 29.9 10.1 77 241-319 60-137 (295)
88 2cw6_A Hydroxymethylglutaryl-C 55.4 21 0.00072 32.9 6.4 50 156-209 152-201 (298)
89 3vnd_A TSA, tryptophan synthas 54.1 74 0.0025 29.2 9.8 56 235-297 71-130 (267)
90 3apt_A Methylenetetrahydrofola 53.9 63 0.0021 30.2 9.5 120 157-303 83-211 (310)
91 3qfe_A Putative dihydrodipicol 53.9 52 0.0018 30.8 8.9 51 242-296 61-112 (318)
92 3e49_A Uncharacterized protein 53.5 13 0.00045 35.2 4.7 54 155-208 27-81 (311)
93 3h5d_A DHDPS, dihydrodipicolin 52.3 85 0.0029 29.1 10.1 52 242-297 57-110 (311)
94 3f4w_A Putative hexulose 6 pho 52.0 56 0.0019 27.7 8.2 112 164-300 68-190 (211)
95 3fa4_A 2,3-dimethylmalate lyas 51.1 54 0.0018 30.9 8.5 78 242-321 62-140 (302)
96 4af0_A Inosine-5'-monophosphat 51.0 22 0.00076 36.4 6.2 57 161-223 281-347 (556)
97 1l6s_A Porphobilinogen synthas 50.8 18 0.0006 34.6 5.0 119 156-300 54-192 (323)
98 3e02_A Uncharacterized protein 50.6 13 0.00045 35.2 4.2 54 155-208 27-81 (311)
99 3a5f_A Dihydrodipicolinate syn 50.5 39 0.0013 31.1 7.3 58 242-303 51-111 (291)
100 3fst_A 5,10-methylenetetrahydr 50.0 93 0.0032 29.1 10.0 49 157-205 94-142 (304)
101 1olt_A Oxygen-independent copr 49.9 1E+02 0.0036 29.8 10.7 63 240-304 215-295 (457)
102 3cqj_A L-ribulose-5-phosphate 49.4 1.1E+02 0.0039 26.8 10.2 132 160-296 108-261 (295)
103 3lye_A Oxaloacetate acetyl hyd 49.4 73 0.0025 30.0 9.1 78 242-321 69-148 (307)
104 2ftp_A Hydroxymethylglutaryl-C 48.2 26 0.0009 32.3 5.8 50 156-209 155-204 (302)
105 1zco_A 2-dehydro-3-deoxyphosph 47.5 76 0.0026 28.9 8.8 62 266-329 24-87 (262)
106 1hjs_A Beta-1,4-galactanase; 4 47.4 96 0.0033 29.0 9.7 34 267-300 174-215 (332)
107 3tva_A Xylose isomerase domain 47.0 31 0.0011 30.4 6.0 128 159-296 101-258 (290)
108 1jvn_A Glutamine, bifunctional 46.9 71 0.0024 32.2 9.2 138 157-297 277-472 (555)
109 1vcv_A Probable deoxyribose-ph 46.7 1.5E+02 0.0051 26.5 10.4 143 140-296 51-219 (226)
110 3hgj_A Chromate reductase; TIM 45.5 40 0.0014 31.8 6.7 50 248-297 206-259 (349)
111 4gj1_A 1-(5-phosphoribosyl)-5- 44.7 18 0.00062 32.5 4.0 48 159-209 150-197 (243)
112 3qfe_A Putative dihydrodipicol 44.5 2E+02 0.0067 26.7 11.3 139 155-323 27-166 (318)
113 1ydo_A HMG-COA lyase; TIM-barr 44.0 30 0.001 32.3 5.5 50 156-209 153-202 (307)
114 4dpp_A DHDPS 2, dihydrodipicol 44.0 58 0.002 31.3 7.7 52 242-297 109-161 (360)
115 2hjp_A Phosphonopyruvate hydro 43.1 94 0.0032 28.9 8.8 76 241-319 57-135 (290)
116 2y5s_A DHPS, dihydropteroate s 42.6 1E+02 0.0035 28.7 9.0 132 156-290 42-217 (294)
117 3l21_A DHDPS, dihydrodipicolin 42.6 91 0.0031 28.8 8.6 136 155-322 31-166 (304)
118 1w1z_A Delta-aminolevulinic ac 42.1 27 0.00092 33.4 4.8 118 156-299 60-197 (328)
119 3ble_A Citramalate synthase fr 42.1 49 0.0017 31.2 6.7 51 157-213 166-218 (337)
120 2xwp_A Sirohydrochlorin cobalt 41.2 1.9E+02 0.0066 25.7 10.4 35 267-301 168-202 (264)
121 1ydn_A Hydroxymethylglutaryl-C 40.3 39 0.0013 30.9 5.6 48 157-208 152-199 (295)
122 2pcq_A Putative dihydrodipicol 40.2 44 0.0015 30.6 5.9 47 242-296 47-94 (283)
123 4djd_D C/Fe-SP, corrinoid/iron 39.6 1.6E+02 0.0054 27.9 9.8 126 159-288 79-236 (323)
124 1rd5_A Tryptophan synthase alp 39.0 2E+02 0.0069 25.3 10.6 71 247-333 189-262 (262)
125 1jub_A Dihydroorotate dehydrog 38.9 49 0.0017 30.2 6.1 109 182-296 66-191 (311)
126 4eiv_A Deoxyribose-phosphate a 38.0 43 0.0015 31.6 5.5 67 143-214 87-156 (297)
127 3b8i_A PA4872 oxaloacetate dec 37.9 1.6E+02 0.0053 27.4 9.3 82 241-326 64-146 (287)
128 2ekc_A AQ_1548, tryptophan syn 37.8 2.2E+02 0.0076 25.4 12.2 58 156-213 27-99 (262)
129 3l5l_A Xenobiotic reductase A; 37.7 37 0.0013 32.3 5.2 51 248-298 212-267 (363)
130 3eoo_A Methylisocitrate lyase; 37.5 2.1E+02 0.0073 26.6 10.3 77 242-321 66-143 (298)
131 3tak_A DHDPS, dihydrodipicolin 36.8 1.1E+02 0.0036 28.1 8.0 136 155-322 17-152 (291)
132 1tx2_A DHPS, dihydropteroate s 36.8 1E+02 0.0035 28.8 7.9 129 157-289 60-226 (297)
133 2yw3_A 4-hydroxy-2-oxoglutarat 36.8 2.1E+02 0.007 24.7 10.5 101 157-298 22-132 (207)
134 3tr9_A Dihydropteroate synthas 36.8 1.5E+02 0.005 28.1 9.0 50 156-205 45-103 (314)
135 1nvm_A HOA, 4-hydroxy-2-oxoval 36.6 59 0.002 30.6 6.3 54 156-213 145-199 (345)
136 2qf7_A Pyruvate carboxylase pr 36.6 2E+02 0.0069 31.8 11.4 148 156-320 569-742 (1165)
137 3sr7_A Isopentenyl-diphosphate 36.0 36 0.0012 32.8 4.8 73 217-299 166-239 (365)
138 3m5v_A DHDPS, dihydrodipicolin 35.5 1.1E+02 0.0038 28.1 7.9 139 155-324 23-161 (301)
139 3h5d_A DHDPS, dihydrodipicolin 35.5 1.1E+02 0.0038 28.4 8.0 136 155-322 23-159 (311)
140 2y88_A Phosphoribosyl isomeras 35.3 28 0.00097 30.3 3.7 114 161-296 32-168 (244)
141 1xky_A Dihydrodipicolinate syn 35.1 1.7E+02 0.0057 26.9 9.1 136 155-322 28-163 (301)
142 3daq_A DHDPS, dihydrodipicolin 35.0 84 0.0029 28.8 7.0 136 156-323 19-154 (292)
143 2a4a_A Deoxyribose-phosphate a 34.6 1.5E+02 0.005 27.6 8.5 67 143-214 93-162 (281)
144 3nvt_A 3-deoxy-D-arabino-heptu 34.5 1.4E+02 0.0047 28.9 8.7 59 268-329 145-206 (385)
145 3na8_A Putative dihydrodipicol 34.2 1.3E+02 0.0046 27.8 8.4 135 155-321 40-174 (315)
146 1qop_A Tryptophan synthase alp 33.1 2.6E+02 0.009 24.9 10.3 56 235-297 70-129 (268)
147 3nl6_A Thiamine biosynthetic b 32.2 1.2E+02 0.004 30.7 8.0 131 159-325 24-166 (540)
148 2ehh_A DHDPS, dihydrodipicolin 32.1 1.4E+02 0.0048 27.2 8.0 136 155-322 16-151 (294)
149 3eb2_A Putative dihydrodipicol 32.0 1.4E+02 0.0049 27.3 8.1 136 155-322 20-155 (300)
150 3khs_A Purine nucleoside phosp 32.0 1.3E+02 0.0045 27.8 7.8 50 241-297 162-217 (285)
151 3gr7_A NADPH dehydrogenase; fl 31.8 33 0.0011 32.4 3.7 50 248-297 198-249 (340)
152 3qy7_A Tyrosine-protein phosph 31.7 44 0.0015 30.3 4.4 29 155-183 15-43 (262)
153 3nav_A Tryptophan synthase alp 31.6 79 0.0027 29.1 6.2 58 233-297 71-132 (271)
154 1ub3_A Aldolase protein; schif 31.1 94 0.0032 27.6 6.4 129 143-296 58-204 (220)
155 3l5a_A NADH/flavin oxidoreduct 31.1 31 0.001 33.8 3.4 26 273-298 260-286 (419)
156 3oa3_A Aldolase; structural ge 31.1 2.6E+02 0.009 26.0 9.7 61 143-208 113-173 (288)
157 3fuc_A Purine nucleoside phosp 30.9 1E+02 0.0036 28.5 6.9 50 241-297 165-220 (284)
158 2yxg_A DHDPS, dihydrodipicolin 30.9 1.6E+02 0.0054 26.8 8.1 136 155-322 16-151 (289)
159 3s5o_A 4-hydroxy-2-oxoglutarat 30.9 1.4E+02 0.0047 27.6 7.8 138 155-322 30-167 (307)
160 1ps9_A 2,4-dienoyl-COA reducta 30.6 65 0.0022 32.7 5.9 50 248-297 195-248 (671)
161 3nvt_A 3-deoxy-D-arabino-heptu 30.6 1.7E+02 0.0057 28.3 8.5 117 158-296 154-282 (385)
162 1mzh_A Deoxyribose-phosphate a 30.4 2.7E+02 0.0094 24.2 12.1 54 241-297 98-152 (225)
163 3lab_A Putative KDPG (2-keto-3 30.2 93 0.0032 27.9 6.2 108 156-298 21-140 (217)
164 2ojp_A DHDPS, dihydrodipicolin 30.1 1.2E+02 0.0042 27.6 7.3 136 155-322 17-152 (292)
165 1o4u_A Type II quinolic acid p 29.4 97 0.0033 28.8 6.4 53 164-224 204-266 (285)
166 3si9_A DHDPS, dihydrodipicolin 29.4 1.6E+02 0.0055 27.3 8.0 137 155-323 38-174 (315)
167 1tqx_A D-ribulose-5-phosphate 29.2 22 0.00076 31.9 1.9 67 157-224 121-199 (227)
168 2i5g_A Amidohydrolase; NYSGXRC 29.0 52 0.0018 31.0 4.5 124 164-300 103-250 (325)
169 3tha_A Tryptophan synthase alp 28.9 13 0.00044 34.2 0.3 58 234-297 66-123 (252)
170 3obe_A Sugar phosphate isomera 28.9 91 0.0031 28.1 6.1 43 249-294 231-274 (305)
171 2hmc_A AGR_L_411P, dihydrodipi 28.6 2.9E+02 0.0099 26.0 9.8 132 155-321 42-174 (344)
172 1ccw_A Protein (glutamate muta 28.2 1.6E+02 0.0056 23.6 6.9 40 163-207 44-83 (137)
173 2vc6_A MOSA, dihydrodipicolina 28.1 1.6E+02 0.0055 26.8 7.6 137 155-323 16-152 (292)
174 3flu_A DHDPS, dihydrodipicolin 28.0 1.4E+02 0.0047 27.4 7.2 136 155-322 23-158 (297)
175 3lub_A Putative creatinine ami 27.8 1E+02 0.0035 27.9 6.2 52 156-214 89-144 (254)
176 3phb_E Purine nucleoside phosp 27.6 80 0.0028 30.0 5.6 26 158-183 127-152 (324)
177 3qze_A DHDPS, dihydrodipicolin 27.6 1.5E+02 0.0052 27.4 7.5 136 155-322 39-174 (314)
178 1o5k_A DHDPS, dihydrodipicolin 27.0 2E+02 0.007 26.4 8.2 136 155-322 28-163 (306)
179 3eeg_A 2-isopropylmalate synth 26.8 95 0.0032 29.1 5.9 49 156-208 147-195 (325)
180 3r2g_A Inosine 5'-monophosphat 26.7 77 0.0026 30.5 5.3 118 159-300 98-231 (361)
181 1y0e_A Putative N-acetylmannos 26.6 2.9E+02 0.0099 23.3 9.3 118 164-300 79-207 (223)
182 1w3i_A EDA, 2-keto-3-deoxy glu 26.6 3.5E+02 0.012 24.5 9.7 118 155-303 15-133 (293)
183 4g81_D Putative hexonate dehyd 26.4 2.2E+02 0.0076 25.4 8.2 108 157-272 41-150 (255)
184 1rqb_A Transcarboxylase 5S sub 26.4 1.1E+02 0.0038 31.0 6.7 130 157-291 172-355 (539)
185 1s2w_A Phosphoenolpyruvate pho 26.1 2.5E+02 0.0085 26.0 8.6 76 242-320 62-140 (295)
186 2dsk_A Chitinase; catalytic do 26.0 3.7E+02 0.013 25.1 9.8 132 129-297 39-179 (311)
187 1g94_A Alpha-amylase; beta-alp 26.0 1.6E+02 0.0053 28.2 7.5 63 267-329 4-78 (448)
188 1u7z_A Coenzyme A biosynthesis 26.0 35 0.0012 30.7 2.6 48 249-302 129-178 (226)
189 3kws_A Putative sugar isomeras 25.8 1.9E+02 0.0065 25.2 7.5 23 160-182 104-126 (287)
190 3cpr_A Dihydrodipicolinate syn 25.8 3E+02 0.01 25.1 9.2 136 155-322 32-167 (304)
191 2ze3_A DFA0005; organic waste 25.7 1.2E+02 0.0041 27.9 6.2 73 241-320 58-130 (275)
192 3e3m_A Transcriptional regulat 25.6 3.1E+02 0.011 24.5 9.2 72 243-328 111-182 (355)
193 2yxo_A Histidinol phosphatase; 25.6 1.7E+02 0.0057 25.4 7.1 23 162-184 18-40 (267)
194 3ewb_X 2-isopropylmalate synth 25.4 1.4E+02 0.0049 27.4 6.8 49 156-208 146-194 (293)
195 2r91_A 2-keto-3-deoxy-(6-phosp 25.2 3.7E+02 0.013 24.2 9.6 118 155-303 14-132 (286)
196 2ekc_A AQ_1548, tryptophan syn 25.1 3.6E+02 0.012 23.9 12.0 54 237-297 72-129 (262)
197 3ks9_A Mglur1, metabotropic gl 24.6 4.7E+02 0.016 25.1 11.3 45 156-204 179-223 (496)
198 2nuw_A 2-keto-3-deoxygluconate 24.6 3.6E+02 0.012 24.4 9.4 118 155-303 15-133 (288)
199 3pzs_A PM kinase, pyridoxamine 24.5 1.8E+02 0.0062 26.0 7.2 120 157-296 57-183 (289)
200 1z41_A YQJM, probable NADH-dep 24.5 1.3E+02 0.0044 28.0 6.4 51 248-298 198-250 (338)
201 1o66_A 3-methyl-2-oxobutanoate 24.4 3.2E+02 0.011 25.3 8.9 125 166-296 30-180 (275)
202 2wvv_A Alpha-L-fucosidase; alp 24.3 44 0.0015 33.0 3.2 56 154-214 75-144 (450)
203 3ovp_A Ribulose-phosphate 3-ep 24.3 32 0.0011 30.7 2.0 68 156-228 13-96 (228)
204 4ef8_A Dihydroorotate dehydrog 24.2 1.9E+02 0.0066 27.5 7.6 128 163-296 61-227 (354)
205 4djd_C C/Fe-SP, corrinoid/iron 24.1 1.7E+02 0.0058 29.1 7.3 138 157-326 102-253 (446)
206 1vyr_A Pentaerythritol tetrani 24.0 74 0.0025 30.2 4.6 52 247-298 214-272 (364)
207 3igs_A N-acetylmannosamine-6-p 23.8 1.9E+02 0.0064 25.6 7.0 112 164-300 92-213 (232)
208 3odg_A Xanthosine phosphorylas 23.7 80 0.0027 29.3 4.7 135 136-297 80-224 (287)
209 2v9d_A YAGE; dihydrodipicolini 23.7 4.1E+02 0.014 24.8 9.8 136 155-322 47-182 (343)
210 3b4u_A Dihydrodipicolinate syn 23.7 4.1E+02 0.014 24.1 10.2 138 155-322 19-158 (294)
211 2zxd_A Alpha-L-fucosidase, put 23.5 56 0.0019 32.3 3.8 56 154-214 102-171 (455)
212 2jbm_A Nicotinate-nucleotide p 23.1 1.6E+02 0.0054 27.4 6.6 51 166-224 210-270 (299)
213 1k77_A EC1530, hypothetical pr 23.1 2.1E+02 0.0073 24.2 7.2 25 159-183 84-108 (260)
214 3bg3_A Pyruvate carboxylase, m 23.1 1.2E+02 0.0041 31.9 6.3 53 157-213 258-310 (718)
215 3rmj_A 2-isopropylmalate synth 23.1 1.3E+02 0.0044 28.8 6.2 49 156-208 153-201 (370)
216 3e61_A Putative transcriptiona 23.1 3.4E+02 0.012 22.9 8.6 70 242-329 48-118 (277)
217 2hmc_A AGR_L_411P, dihydrodipi 22.7 3.4E+02 0.012 25.5 9.0 68 242-326 76-147 (344)
218 3fkr_A L-2-keto-3-deoxyarabona 22.7 4.5E+02 0.015 24.1 9.9 136 155-322 24-161 (309)
219 2wqp_A Polysialic acid capsule 22.6 2.2E+02 0.0074 27.2 7.6 116 158-294 33-178 (349)
220 1itu_A Renal dipeptidase; glyc 22.6 77 0.0026 30.5 4.5 124 164-300 135-289 (369)
221 3cu2_A Ribulose-5-phosphate 3- 22.5 2.9E+02 0.01 24.6 8.1 122 159-300 78-220 (237)
222 3noy_A 4-hydroxy-3-methylbut-2 22.5 5.3E+02 0.018 24.9 13.4 139 156-328 42-203 (366)
223 2rfg_A Dihydrodipicolinate syn 22.4 1.5E+02 0.0051 27.2 6.2 136 155-322 16-151 (297)
224 1jw9_B Molybdopterin biosynthe 22.4 2.1E+02 0.0071 25.3 7.1 52 163-214 44-106 (249)
225 2wkj_A N-acetylneuraminate lya 22.3 4.5E+02 0.015 24.0 10.3 137 155-322 27-163 (303)
226 3usb_A Inosine-5'-monophosphat 22.2 1.2E+02 0.004 30.3 5.9 121 160-300 255-391 (511)
227 1vli_A Spore coat polysacchari 22.1 1.3E+02 0.0045 29.2 6.0 43 248-296 148-190 (385)
228 3ues_A Alpha-1,3/4-fucosidase; 22.0 62 0.0021 32.3 3.8 56 154-214 59-131 (478)
229 4fo4_A Inosine 5'-monophosphat 21.9 2.6E+02 0.0087 26.7 8.0 85 192-297 81-177 (366)
230 3cny_A Inositol catabolism pro 21.8 1.8E+02 0.0063 25.2 6.6 23 159-181 89-111 (301)
231 1fob_A Beta-1,4-galactanase; B 21.7 4.7E+02 0.016 24.0 9.8 21 156-176 56-76 (334)
232 3ktc_A Xylose isomerase; putat 21.7 4.4E+02 0.015 23.6 9.3 129 160-292 107-265 (333)
233 3zs7_A Pyridoxal kinase; trans 21.5 60 0.002 29.8 3.3 28 158-185 163-190 (300)
234 3dhu_A Alpha-amylase; structur 21.5 1.5E+02 0.0052 28.2 6.4 56 273-328 26-96 (449)
235 2h9a_B CO dehydrogenase/acetyl 21.3 4.6E+02 0.016 24.4 9.5 125 160-288 74-229 (310)
236 3upl_A Oxidoreductase; rossman 21.2 1.9E+02 0.0064 28.6 7.0 63 246-320 146-208 (446)
237 4ab4_A Xenobiotic reductase B; 21.1 76 0.0026 30.3 4.1 50 248-297 207-262 (362)
238 3gka_A N-ethylmaleimide reduct 21.1 78 0.0027 30.3 4.1 50 248-297 215-270 (361)
239 3h3e_A Uncharacterized protein 21.0 1.9E+02 0.0065 26.2 6.6 48 247-297 185-235 (267)
240 2nx9_A Oxaloacetate decarboxyl 20.8 2E+02 0.0069 28.4 7.2 51 157-212 155-205 (464)
241 2xvy_A Chelatase, putative; me 20.8 3.8E+02 0.013 23.5 8.6 32 269-300 179-210 (269)
242 2gou_A Oxidoreductase, FMN-bin 20.5 90 0.0031 29.7 4.4 51 248-298 215-271 (365)
243 2zvr_A Uncharacterized protein 20.5 2.5E+02 0.0085 24.5 7.2 129 160-296 113-262 (290)
244 3oa3_A Aldolase; structural ge 20.4 5.2E+02 0.018 24.0 12.0 74 241-325 154-228 (288)
245 2b7n_A Probable nicotinate-nuc 20.2 1.5E+02 0.0052 27.0 5.8 51 166-224 195-255 (273)
246 2dh2_A 4F2 cell-surface antige 20.2 95 0.0032 29.8 4.6 55 275-329 34-95 (424)
247 3o63_A Probable thiamine-phosp 20.1 4.6E+02 0.016 23.3 10.8 50 267-323 135-186 (243)
248 2r14_A Morphinone reductase; H 20.1 83 0.0028 30.1 4.1 51 248-298 220-276 (377)
249 3lmz_A Putative sugar isomeras 20.0 2.1E+02 0.0071 24.6 6.5 65 245-328 61-125 (257)
No 1
>2qgq_A Protein TM_1862; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: CXS; 2.00A {Thermotoga maritima MSB8}
Probab=99.91 E-value=6.7e-24 Score=201.31 Aligned_cols=185 Identities=17% Similarity=0.325 Sum_probs=134.7
Q ss_pred eEEEEeecCCCCCCCCCcccCCCCCC-CCCCchhHHHHHHHHHHCCCcEEEEeeecCCCCCCchH-----HHHHHHHHHH
Q 019890 129 TATIMILGDTCTRGCRFCNVKTSRAP-PPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGS-----GHFAQTVRKL 202 (334)
Q Consensus 129 Tatfm~igdgCtr~C~FC~V~~~r~p-~~ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga-----~~fa~lIr~I 202 (334)
+.+|+.+++||+.+|+||.++..+++ ..++++++.++++.+.+.|+++|+|+|++. ..+|. ..|.++++.|
T Consensus 4 ~~~~v~is~GC~~~C~fC~~~~~~g~~r~r~~e~i~~ei~~l~~~G~~ei~l~g~~~---~~yG~~~~~~~~l~~Ll~~l 80 (304)
T 2qgq_A 4 PYAYVKISDGCDRGCTFCSIPSFKGSLRSRSIEDITREVEDLLKEGKKEIILVAQDT---TSYGIDLYRKQALPDLLRRL 80 (304)
T ss_dssp SEEEEESBCCC-------------CCCCBCCHHHHHHHHHHHHHTTCCEEEEECTTG---GGTTHHHHSSCCHHHHHHHH
T ss_pred EEEEEEECCCCCCcCccCCccccCCCceeeCHHHHHHHHHHHHHCCCcEEEEEeEcc---cccCCCCCcHHHHHHHHHHH
Confidence 78999999999999999999987653 467899999999999999999999999763 23332 4689999999
Q ss_pred HhhCCCC-ceeee--------------ecccc--ccccccchhh-HHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCcceE
Q 019890 203 KELKPNM-LIEAL--------------VAKSG--LNVFAHNIET-VEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLT 264 (334)
Q Consensus 203 k~~~P~i-~vE~L--------------l~~ag--~dv~~HnlET-v~~l~~~Vr~r~~tye~sL~vL~~ak~~~p~Gl~t 264 (334)
++. +++ .+.+. ++++| .+.+...+|+ .+++++.|+ |++++++.++.++.+++.+|+ +.+
T Consensus 81 ~~~-~gi~~ir~~~~~p~~l~~e~l~~l~~~g~~~~~l~i~lqs~s~~vl~~m~-r~~t~e~~~~~i~~l~~~~~g-i~i 157 (304)
T 2qgq_A 81 NSL-NGEFWIRVMYLHPDHLTEEIISAMLELDKVVKYFDVPVQHGSDKILKLMG-RTKSSEELKKMLSSIRERFPD-AVL 157 (304)
T ss_dssp HTS-SSSCEEEECCCCGGGCCHHHHHHHHHCTTBCCEEECCCBCSCHHHHHHTT-CCSCHHHHHHHHHHHHHHCTT-CEE
T ss_pred Hhc-CCCcEEEEeeeecccCCHHHHHHHHhCCCCccEEEEecccCCHHHHHHhC-CCCCHHHHHHHHHHHHhhCCC-CEE
Confidence 875 443 22221 66677 6777778897 599999999 899999999999999998776 999
Q ss_pred eeceEEec-CCCHHHHHHHHHHHHHcCCcEEeeccCc-CCCCCCCcccccCCHHHHH
Q 019890 265 KTSIMLGC-GETPDQVVSTMEKVRAAGVDVMTFGQYM-RPSKRHMPVSEYITPEAFE 319 (334)
Q Consensus 265 kTgiMVGl-GETdEE~~etl~~Lre~gvd~vtigqYl-rP~~~h~~v~~yv~P~~f~ 319 (334)
.+++|+|| |||+||+.++++++++++++.+++++|+ +|..........+++++..
T Consensus 158 ~~~~IvG~PgEt~ed~~~t~~~l~~l~~~~v~~~~~~p~pgT~~~~~~~~v~~~~~~ 214 (304)
T 2qgq_A 158 RTSIIVGFPGETEEDFEELKQFVEEIQFDKLGAFVYSDEEGTVAFNLKEKVDPEMAK 214 (304)
T ss_dssp EEEEEECCTTCCHHHHHHHHHHHHHHCCSEEEEEECCC-----------CCCHHHHH
T ss_pred EEEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEEEeeCCCCChhHhCcCCCCHHHHH
Confidence 99999999 9999999999999999999999999997 6776655555677776533
No 2
>3t7v_A Methylornithine synthase PYLB; TIM-barrel fold, mutase, [4Fe-4S]-cluster, SAM, lysine, transferase; HET: SAM MD0; 1.50A {Methanosarcina barkeri}
Probab=99.89 E-value=1.6e-22 Score=194.25 Aligned_cols=189 Identities=17% Similarity=0.239 Sum_probs=152.7
Q ss_pred EEEEeecCCCCCCCCCcccCCCCCC--CCCCchhHHHHHHHHHHCCCcEEEEeeecCCCCCCc--hHHHHHHHHHHHHhh
Q 019890 130 ATIMILGDTCTRGCRFCNVKTSRAP--PPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQ--GSGHFAQTVRKLKEL 205 (334)
Q Consensus 130 atfm~igdgCtr~C~FC~V~~~r~p--~~ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~--Ga~~fa~lIr~Ik~~ 205 (334)
.+++.++++|+.+|+||+++..... ..++++|+.+.++.+.+.|+++|+++|+.. |.. ..+.+.++++.|++.
T Consensus 62 ~~~i~~t~~C~~~C~fC~~~~~~~~~~~~ls~eei~~~~~~~~~~G~~~i~l~gGe~---p~~~~~~~~~~~l~~~ik~~ 138 (350)
T 3t7v_A 62 NCFIYFSTYCKNQCSFCYYNCRNEINRYRLTMEEIKETCKTLKGAGFHMVDLTMGED---PYYYEDPNRFVELVQIVKEE 138 (350)
T ss_dssp EEEEEEECCCCCCCTTCTTCTTSCCCCCBCCHHHHHHHHHHHTTSCCSEEEEEECCC---HHHHHSTHHHHHHHHHHHHH
T ss_pred EEeeecCCCcCCCCCcCCCcCcCCCCceeCCHHHHHHHHHHHHHCCCCEEEEeeCCC---CccccCHHHHHHHHHHHHhh
Confidence 4467789999999999999865422 247999999999999999999999998762 322 246789999999876
Q ss_pred CCCCceee---------e--eccccccccccchhhH-HHHHHhhcCCCCCHHHHHHHHHHHHHhCCCcceEeeceEEecC
Q 019890 206 KPNMLIEA---------L--VAKSGLNVFAHNIETV-EELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCG 273 (334)
Q Consensus 206 ~P~i~vE~---------L--l~~ag~dv~~HnlETv-~~l~~~Vr~r~~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGlG 273 (334)
.+ +.+++ + ++++|++.+.+++|+. +++|+.|+ ++++++++++.++.+++. |+.+++++|+|+|
T Consensus 139 ~~-i~i~~s~g~~~~e~l~~L~~aG~~~i~i~lEt~~~~~~~~i~-~~~~~~~~l~~i~~a~~~---Gi~v~~~~i~Glg 213 (350)
T 3t7v_A 139 LG-LPIMISPGLMDNATLLKAREKGANFLALYQETYDTELYRKLR-VGQSFDGRVNARRFAKQQ---GYCVEDGILTGVG 213 (350)
T ss_dssp HC-SCEEEECSSCCHHHHHHHHHTTEEEEECCCBCSCHHHHHHHS-TTCCHHHHHHHHHHHHHH---TCEEEEEEEESSS
T ss_pred cC-ceEEEeCCCCCHHHHHHHHHcCCCEEEEeeecCCHHHHHHhC-CCCCHHHHHHHHHHHHHc---CCeEccceEeecC
Confidence 43 44432 1 8899999999999996 99999999 689999999999999997 7999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCcEEeeccCcCCCCCCCccc--ccCCHHHHHHHHHHHHHh
Q 019890 274 ETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMPVS--EYITPEAFERYRALGMEM 328 (334)
Q Consensus 274 ETdEE~~etl~~Lre~gvd~vtigqYlrP~~~h~~v~--~yv~P~~f~~~~~~a~~~ 328 (334)
||.+|+.+++++|++++++.+.+++|... ...|+. .-.+++++...-.+++.+
T Consensus 214 et~e~~~~~l~~l~~l~~~~v~~~~f~p~--~gT~l~~~~~~~~~e~l~~ia~~Rl~ 268 (350)
T 3t7v_A 214 NDIESTILSLRGMSTNDPDMVRVMTFLPQ--EGTPLEGFRDKSNLSELKIISVLRLM 268 (350)
T ss_dssp CCHHHHHHHHHHHHHTCCSEEEEEECCCC--TTSTTTTCCCCCCCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhCCCCEEEecceeeC--CCCcCccCCCCChHHHHHHHHHHHHh
Confidence 99999999999999999999999988742 223333 345666666655555543
No 3
>3iix_A Biotin synthetase, putative; adoMet radical, SAM radical, adoMet cleavage, Fe4S4 cluster, HYDE, hydrogenase, maturation, beta barrel; HET: OTY CSO 5AD CPS; 1.25A {Thermotoga maritima} PDB: 3ciw_A* 3iiz_A* 3cix_A*
Probab=99.85 E-value=3.5e-20 Score=176.60 Aligned_cols=187 Identities=18% Similarity=0.337 Sum_probs=153.4
Q ss_pred EEEeecCCCCCCCCCcccCCCCCC---CCCCchhHHHHHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhCC
Q 019890 131 TIMILGDTCTRGCRFCNVKTSRAP---PPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKP 207 (334)
Q Consensus 131 tfm~igdgCtr~C~FC~V~~~r~p---~~ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~P 207 (334)
+++.++++|+.+|.||.++...+. ..++++|+.+.++.+.+.|+++|+|+|+.. |....+.+.++++.|++.
T Consensus 55 ~~i~~t~~C~~~C~fC~~~~~~~~~~~~~ls~eei~~~i~~~~~~g~~~i~~~gGe~---p~~~~~~~~~li~~i~~~-- 129 (348)
T 3iix_A 55 AIIEFSNVCRKNCLYCGLRRDNKNLKRYRMTPEEIVERARLAVQFGAKTIVLQSGED---PYXMPDVISDIVKEIKKM-- 129 (348)
T ss_dssp EEEEEECCCSCCCTTCTTCTTCCSSCCCBCCHHHHHHHHHHHHHTTCSEEEEEESCC---GGGTTHHHHHHHHHHHTT--
T ss_pred EEeEecCCcCCcCccCCCCCCCCCcCceeCCHHHHHHHHHHHHHCCCCEEEEEeCCC---CCccHHHHHHHHHHHHhc--
Confidence 347789999999999998865432 247899999999999999999999999862 333346899999999876
Q ss_pred CCceeee-----------eccccccccccchhhH-HHHHHhhcCCCCCHHHHHHHHHHHHHhCCCcceEeeceEEec-CC
Q 019890 208 NMLIEAL-----------VAKSGLNVFAHNIETV-EELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC-GE 274 (334)
Q Consensus 208 ~i~vE~L-----------l~~ag~dv~~HnlETv-~~l~~~Vr~r~~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGl-GE 274 (334)
++.+.+- ++++|++.+.+++|+. +++|+.++ +..+|+++++.++.+++. |+.+++++|+|+ ||
T Consensus 130 ~~~i~~s~g~l~~e~l~~L~~ag~~~v~i~let~~~~~~~~i~-~~~~~~~~~~~i~~~~~~---Gi~v~~~~i~G~p~e 205 (348)
T 3iix_A 130 GVAVTLSLGEWPREYYEKWKEAGADRYLLRHETANPVLHRKLR-PDTSFENRLNCLLTLKEL---GYETGAGSMVGLPGQ 205 (348)
T ss_dssp SCEEEEECCCCCHHHHHHHHHHTCCEEECCCBCSCHHHHHHHS-TTSCHHHHHHHHHHHHHT---TCEEEECBEESCTTC
T ss_pred CceEEEecCCCCHHHHHHHHHhCCCEEeeeeeeCCHHHHHHhC-CCcCHHHHHHHHHHHHHh---CCeeccceEEeCCCC
Confidence 4544421 8889999999999997 99999999 578999999999999996 799999999999 99
Q ss_pred CHHHHHHHHHHHHHcCCcEEeeccCcCCCCCCCccc--ccCCHHHHHHHHHHHHHh
Q 019890 275 TPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMPVS--EYITPEAFERYRALGMEM 328 (334)
Q Consensus 275 TdEE~~etl~~Lre~gvd~vtigqYlrP~~~h~~v~--~yv~P~~f~~~~~~a~~~ 328 (334)
|.+|+.+++++|++++++.+.+++|.. .+ ..|+. ...+++++..+-.+++.+
T Consensus 206 t~e~~~~~~~~l~~l~~~~i~i~~~~p-~~-gt~l~~~~~~~~~e~~~~~a~~R~~ 259 (348)
T 3iix_A 206 TIDDLVDDLLFLKEHDFDMVGIGPFIP-HP-DTPLANEKKGDFTLTLKMVALTRIL 259 (348)
T ss_dssp CHHHHHHHHHHHHHHTCSEECCEECCC-CT-TSTTTTSCCCCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCCCEEeeeeeec-CC-CCCcccCCCCCHHHHHHHHHHHHHH
Confidence 999999999999999999999998873 22 23343 345677777766666654
No 4
>1r30_A Biotin synthase; SAM radical protein, TIM barrel, FES cluster, transferase; HET: SAM DTB; 3.40A {Escherichia coli} SCOP: c.1.28.1
Probab=99.84 E-value=9.6e-20 Score=176.46 Aligned_cols=193 Identities=16% Similarity=0.284 Sum_probs=153.1
Q ss_pred eEEEEee-cCCCCCCCCCcccCCCC--C---CCCCCchhHHHHHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHH
Q 019890 129 TATIMIL-GDTCTRGCRFCNVKTSR--A---PPPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKL 202 (334)
Q Consensus 129 Tatfm~i-gdgCtr~C~FC~V~~~r--~---p~~ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~I 202 (334)
..+++.+ +++|+.+|.||.++... + ...++++|+.+.++.+.+.|++.|+++|+..+ ......+.+.++++.|
T Consensus 65 ~~~~i~i~t~~C~~~C~yC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~~g~~~i~~~gg~~~-p~~~~~~~l~~ll~~i 143 (369)
T 1r30_A 65 VSTLLSIKTGACPEDCKYCPQSSRYKTGLEAERLMEVEQVLESARKAKAAGSTRFCMGAAWKN-PHERDMPYLEQMVQGV 143 (369)
T ss_dssp EEEEEEEECSCBSSCCSSCSCBTTSCTTCCCCCCCCHHHHHHHHHHHHHTTCSEEEEEECCSS-CCTTTHHHHHHHHHHH
T ss_pred EEEEEEEECCCCcccCccCCCCCcCCCCCcccccCCHHHHHHHHHHHHHcCCcEEEEEeCCCC-CCcCCHHHHHHHHHHH
Confidence 3556665 99999999999998632 1 12378999999999999999999999987532 1224567899999999
Q ss_pred HhhCCCCce-------eee--eccccccccccchhhHHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCcceEeeceEEecC
Q 019890 203 KELKPNMLI-------EAL--VAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCG 273 (334)
Q Consensus 203 k~~~P~i~v-------E~L--l~~ag~dv~~HnlETv~~l~~~Vr~r~~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGlG 273 (334)
++..+.+.+ |.+ ++++|++.+++++|+.+++|+.++ ++++|+++++.++.+++. |+.+++++|+|+|
T Consensus 144 k~~g~~i~~t~G~l~~e~l~~L~~aGvd~v~i~les~~e~~~~i~-~~~~~~~~l~~i~~a~~~---Gi~v~~~~I~Gl~ 219 (369)
T 1r30_A 144 KAMGLEACMTLGTLSESQAQRLANAGLDYYNHNLDTSPEFYGNII-TTRTYQERLDTLEKVRDA---GIKVCSGGIVGLG 219 (369)
T ss_dssp HHTTSEEEEECSSCCHHHHHHHHHHCCCEEECCCBSCHHHHHHHC-CSSCHHHHHHHHHHHHHH---HCEEECCEEECSS
T ss_pred HHcCCeEEEecCCCCHHHHHHHHHCCCCEEeecCcCCHHHHHHhC-CCCCHHHHHHHHHHHHHc---CCeeeeeeEeeCC
Confidence 886332221 111 889999999999999999999999 689999999999999997 7899999999999
Q ss_pred CCHHHHHHHHHHHHHcC--CcEEeeccCcCCCCCCCccc--ccCCHHHHHHHHHHHHHh
Q 019890 274 ETPDQVVSTMEKVRAAG--VDVMTFGQYMRPSKRHMPVS--EYITPEAFERYRALGMEM 328 (334)
Q Consensus 274 ETdEE~~etl~~Lre~g--vd~vtigqYlrP~~~h~~v~--~yv~P~~f~~~~~~a~~~ 328 (334)
||.+|+.+++++|++++ ++.+++..|. |.+. .|+. ...+++++.++-.+++.+
T Consensus 220 et~ed~~~~l~~l~~l~~~~~~i~~~~l~-p~~g-T~l~~~~~~~~~~~~~~~~~~r~~ 276 (369)
T 1r30_A 220 ETVKDRAGLLLQLANLPTPPESVPINMLV-KVKG-TPLADNDDVDAFDFIRTIAVARIM 276 (369)
T ss_dssp CCHHHHHHHHHHHHSSSSCCSEEEEEECC-CCTT-STTSSCCCCCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhcCCCCEEEeeeee-ecCC-CcCCCCCCCCHHHHHHHHHHHHHh
Confidence 99999999999999998 8999998775 3221 2332 456777777777777665
No 5
>1olt_A Oxygen-independent coproporphyrinogen III oxidase; heme biosynthesis, decarboxylase, radical SAM enzyme, 4Fe- 4 cluster; HET: SAM; 2.07A {Escherichia coli} SCOP: c.1.28.2
Probab=99.62 E-value=4.1e-15 Score=148.51 Aligned_cols=168 Identities=16% Similarity=0.230 Sum_probs=130.1
Q ss_pred eEEEEeecCCCCCCCCCcccCCCCCCC----CCCchhHHHHHHHHHHC----CCcEEEEeeecCCCCCC-chHHHHHHHH
Q 019890 129 TATIMILGDTCTRGCRFCNVKTSRAPP----PPDPDEPTNVAEAIASW----GLDYVVITSVDRDDLAD-QGSGHFAQTV 199 (334)
Q Consensus 129 Tatfm~igdgCtr~C~FC~V~~~r~p~----~ld~~Ep~~~A~av~~~----GlkeVVLTSv~rdDl~d-~Ga~~fa~lI 199 (334)
...|+.|. .|+.+|.||.++...... ....+.+.++++.+.+. ++..|.+.|++ |. ...+.+.+++
T Consensus 53 ~~lYihIp-fC~~~C~yC~~~~~~~~~~~~~~~~~~~l~~Ei~~~~~~~~~~~i~~i~fgGGt----pt~l~~~~l~~ll 127 (457)
T 1olt_A 53 LSLYVHIP-FCHKLCYFCGCNKIVTRQQHKADQYLDALEQEIVHRAPLFAGRHVSQLHWGGGT----PTYLNKAQISRLM 127 (457)
T ss_dssp EEEEEEEC-EESSCCTTCCSSCEECSCTHHHHHHHHHHHHHHHHHGGGGTTCCEEEEEEEESC----GGGSCHHHHHHHH
T ss_pred eEEEEEcC-CCCCCCCCCCCceeccCCcchHHHHHHHHHHHHHHHHHhcCCCceEEEEEeCCC----cccCCHHHHHHHH
Confidence 56777775 699999999998632111 11245556666555443 45677777754 22 1356899999
Q ss_pred HHHHhhCC-----CCceeee-----------eccccccccccchhhH-HHHHHhhcCCCCCHHHHHHHHHHHHHhCCCcc
Q 019890 200 RKLKELKP-----NMLIEAL-----------VAKSGLNVFAHNIETV-EELQSAVRDHRANFKQSLDVLMMAKDYVPAGT 262 (334)
Q Consensus 200 r~Ik~~~P-----~i~vE~L-----------l~~ag~dv~~HnlETv-~~l~~~Vr~r~~tye~sL~vL~~ak~~~p~Gl 262 (334)
+.|++..+ .+++|+- ++++|++.+...+|+. +++++.|+ |.+++++.++.++.+++. |+
T Consensus 128 ~~i~~~~~~~~~~eitie~~p~~l~~e~l~~L~~~G~~rislGvQS~~~~~l~~i~-R~~~~~~~~~ai~~~r~~---G~ 203 (457)
T 1olt_A 128 KLLRENFQFNADAEISIEVDPREIELDVLDHLRAEGFNRLSMGVQDFNKEVQRLVN-REQDEEFIFALLNHAREI---GF 203 (457)
T ss_dssp HHHHHHSCEEEEEEEEEEECSSSCCTHHHHHHHHTTCCEEEEEEECCCHHHHHHHT-CCCCHHHHHHHHHHHHHT---TC
T ss_pred HHHHHhCCCCCCcEEEEEEccCcCCHHHHHHHHHcCCCEEEEeeccCCHHHHHHhC-CCCCHHHHHHHHHHHHHc---CC
Confidence 99988543 2344331 7889999999999986 89999999 899999999999999996 68
Q ss_pred e-EeeceEEec-CCCHHHHHHHHHHHHHcCCcEEeeccCc-CCCCC
Q 019890 263 L-TKTSIMLGC-GETPDQVVSTMEKVRAAGVDVMTFGQYM-RPSKR 305 (334)
Q Consensus 263 ~-tkTgiMVGl-GETdEE~~etl~~Lre~gvd~vtigqYl-rP~~~ 305 (334)
. +++++|+|| |||.+++.++++.+.+++++.+.+++|. .|...
T Consensus 204 ~~v~~dlI~GlPget~e~~~~tl~~~~~l~~~~i~~y~l~~~p~t~ 249 (457)
T 1olt_A 204 TSTNIDLIYGLPKQTPESFAFTLKRVAELNPDRLSVFNYAHLPTIF 249 (457)
T ss_dssp CSCEEEEEESCTTCCHHHHHHHHHHHHHHCCSEEEEEECCCCTTTS
T ss_pred CcEEEEEEcCCCCCCHHHHHHHHHHHHhcCcCEEEeecCcCCcCch
Confidence 7 999999999 9999999999999999999999999997 56543
No 6
>1tv8_A MOAA, molybdenum cofactor biosynthesis protein A; TIM barrel, ligand binding protein; HET: SAM; 2.20A {Staphylococcus aureus} SCOP: c.1.28.3 PDB: 1tv7_A* 2fb3_A* 2fb2_A*
Probab=99.49 E-value=9.1e-13 Score=125.46 Aligned_cols=190 Identities=17% Similarity=0.267 Sum_probs=138.0
Q ss_pred CcccccCCCCCcceEEEEeecCCCCCCCCCcccCC----CC----CCCCCCchhHHHHHHHHHHCCCcEEEEeeecCCCC
Q 019890 116 LGECWSGGETGTATATIMILGDTCTRGCRFCNVKT----SR----APPPPDPDEPTNVAEAIASWGLDYVVITSVDRDDL 187 (334)
Q Consensus 116 i~ec~~~~~~~~~Tatfm~igdgCtr~C~FC~V~~----~r----~p~~ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl 187 (334)
+-+-|+.. .....+.++++|+.+|.||.... .. ....++.+|+.++++.+.+.|++.|.+||+.. +
T Consensus 5 l~d~~gr~----~~~l~i~~T~~CNl~C~yC~~~~~~~~~~~~~~~~~~ls~e~i~~~i~~~~~~g~~~i~~tGGEP--l 78 (340)
T 1tv8_A 5 IKDKLGRP----IRDLRLSVTDRCNFRCDYCMPKEVFGDDFVFLPKNELLTFDEMARIAKVYAELGVKKIRITGGEP--L 78 (340)
T ss_dssp CBCTTSCB----CCEEEEECCSCCSCCCTTTSCTTTSSTTCCCCCGGGSCCHHHHHHHHHHHHHTTCCEEEEESSCG--G
T ss_pred CcCCCCCc----cCeEEEEeCCCcCCcCCCCCcCcccCCCcccCCccCCCCHHHHHHHHHHHHHCCCCEEEEeCCCc--c
Confidence 33456654 23445678999999999998765 11 12347899999999999999999999999763 1
Q ss_pred CCchHHHHHHHHHHHHhhCCCCceeee------------eccccccccccchhhH-HHHHHhhcCCCC-CHHHHHHHHHH
Q 019890 188 ADQGSGHFAQTVRKLKELKPNMLIEAL------------VAKSGLNVFAHNIETV-EELQSAVRDHRA-NFKQSLDVLMM 253 (334)
Q Consensus 188 ~d~Ga~~fa~lIr~Ik~~~P~i~vE~L------------l~~ag~dv~~HnlETv-~~l~~~Vr~r~~-tye~sL~vL~~ 253 (334)
-. ..|.++++.+++......+.+. ++++|++.++..+++. ++.|+.++ ++. +|++.++.|+.
T Consensus 79 l~---~~l~~li~~~~~~~~~~~i~i~TNG~ll~~~~~~L~~~g~~~v~iSld~~~~~~~~~i~-~~~~~~~~v~~~i~~ 154 (340)
T 1tv8_A 79 MR---RDLDVLIAKLNQIDGIEDIGLTTNGLLLKKHGQKLYDAGLRRINVSLDAIDDTLFQSIN-NRNIKATTILEQIDY 154 (340)
T ss_dssp GS---TTHHHHHHHHTTCTTCCEEEEEECSTTHHHHHHHHHHHTCCEEEEECCCSSHHHHHHHH-SSCCCHHHHHHHHHH
T ss_pred ch---hhHHHHHHHHHhCCCCCeEEEEeCccchHHHHHHHHHCCCCEEEEecCCCCHHHHHHhh-CCCCCHHHHHHHHHH
Confidence 11 1367888888775321123222 6778888888889985 88999998 566 99999999999
Q ss_pred HHHhCCCcceEeeceEEecCCCHHHHHHHHHHHHHcCCcEEeeccCcCCCCC--CCcccccCCHHHHHH
Q 019890 254 AKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKR--HMPVSEYITPEAFER 320 (334)
Q Consensus 254 ak~~~p~Gl~tkTgiMVGlGETdEE~~etl~~Lre~gvd~vtigqYlrP~~~--h~~v~~yv~P~~f~~ 320 (334)
+++. |+.++..+++.-|++++|+.+++++++++|++ +.+..|+ |... ...-..+++++++..
T Consensus 155 l~~~---g~~v~i~~vv~~g~n~~ei~~~~~~~~~~g~~-~~~i~~~-p~~~~~~~~~~~~~~~~e~~~ 218 (340)
T 1tv8_A 155 ATSI---GLNVKVNVVIQKGINDDQIIPMLEYFKDKHIE-IRFIEFM-DVGNDNGWDFSKVVTKDEMLT 218 (340)
T ss_dssp HHHT---TCEEEEEEEECTTTTGGGHHHHHHHHHHTTCC-EEEEECC-CBCSSSSBCCSSCCCHHHHHH
T ss_pred HHHC---CCCEEEEEEEeCCCCHHHHHHHHHHHHhcCCe-EEEEEee-EcCCCccchhhcCCCHHHHHH
Confidence 9996 67788888775599999999999999999998 4444554 4322 222234677765433
No 7
>3c8f_A Pyruvate formate-lyase 1-activating enzyme; adoMet radical, SAM radical, activase, glycyl radical, 4Fe- 4S, carbohydrate metabolism, cytoplasm; HET: MT2 PGE; 2.25A {Escherichia coli} PDB: 3cb8_A*
Probab=99.40 E-value=4e-12 Score=113.25 Aligned_cols=189 Identities=11% Similarity=0.118 Sum_probs=131.4
Q ss_pred eEEEEeecCCCCCCCCCcccCCCCC---CCCCCchhHHHHHHHHHHC---CCcEEEEeeecCCCCCCchHHHHHHHHHHH
Q 019890 129 TATIMILGDTCTRGCRFCNVKTSRA---PPPPDPDEPTNVAEAIASW---GLDYVVITSVDRDDLADQGSGHFAQTVRKL 202 (334)
Q Consensus 129 Tatfm~igdgCtr~C~FC~V~~~r~---p~~ld~~Ep~~~A~av~~~---GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~I 202 (334)
.++++ ++++|+.+|.||..+.... ...++++++.+.++.+... ++..|+++|++ |-...+.+.++++.+
T Consensus 20 ~~~~i-~t~~Cn~~C~~C~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~i~~~GGE----P~l~~~~l~~l~~~~ 94 (245)
T 3c8f_A 20 IRFIT-FFQGCLMRCLYCHNRDTWDTHGGKEVTVEDLMKEVVTYRHFMNASGGGVTASGGE----AILQAEFVRDWFRAC 94 (245)
T ss_dssp EEEEE-EESCCSCCCTTCSCGGGCCTTCSEEECHHHHHHHHGGGHHHHTSTTCEEEEEESC----GGGGHHHHHHHHHHH
T ss_pred cEEEE-EeCCCCCCCCCCCCchhcccccCccCCHHHHHHHHHHhhhhhcCCCCeEEEECCC----cCCCHHHHHHHHHHH
Confidence 55554 6789999999999874321 2246788888888766654 47899999975 332344568999999
Q ss_pred HhhCCCCceeee--------------eccccccccccchhhH-HHHHHhhcCCCCCHHHHHHHHHHHHHhCCCcceEeec
Q 019890 203 KELKPNMLIEAL--------------VAKSGLNVFAHNIETV-EELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTS 267 (334)
Q Consensus 203 k~~~P~i~vE~L--------------l~~ag~dv~~HnlETv-~~l~~~Vr~r~~tye~sL~vL~~ak~~~p~Gl~tkTg 267 (334)
++. ++.+.+. +.+. ++.+...+++. +..++.++ + .++++.++.++.+++.... +.+.+.
T Consensus 95 ~~~--~~~i~i~Tng~~~~~~~~~~~l~~~-~~~v~isld~~~~~~~~~~~-~-~~~~~~~~~i~~l~~~g~~-v~i~~~ 168 (245)
T 3c8f_A 95 KKE--GIHTCLDTNGFVRRYDPVIDELLEV-TDLVMLDLKQMNDEIHQNLV-G-VSNHRTLEFAKYLANKNVK-VWIRYV 168 (245)
T ss_dssp HTT--TCCEEEEECCCCCCCCHHHHHHHHT-CSEEEEECCCSSHHHHHHHH-S-SCSHHHHHHHHHHHHHTCC-EEEEEE
T ss_pred HHc--CCcEEEEeCCCcCcCHHHHHHHHHh-CCEEEEeCCCCCHHHhhhcc-C-CCHHHHHHHHHHHHhcCCE-EEEEEe
Confidence 875 3322221 2233 55566667874 88999998 3 5579999999999987333 445555
Q ss_pred eEEecCCCHHHHHHHHHHHHHcCC-cEEeeccCcCCCC-------CCCccc--ccCCHHHHHHHHHHHHHh
Q 019890 268 IMLGCGETPDQVVSTMEKVRAAGV-DVMTFGQYMRPSK-------RHMPVS--EYITPEAFERYRALGMEM 328 (334)
Q Consensus 268 iMVGlGETdEE~~etl~~Lre~gv-d~vtigqYlrP~~-------~h~~v~--~yv~P~~f~~~~~~a~~~ 328 (334)
++-|++++.+++.++++++++++. +.+.+.+|.+... +..+.. .-.++++++++.+++++.
T Consensus 169 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (245)
T 3c8f_A 169 VVPGWSDDDDSAHRLGEFTRDMGNVEKIELLPYHELGKHKWVAMGEEYKLDGVKPPKKETMERVKGILEQY 239 (245)
T ss_dssp ECTTTTCCHHHHHHHHHHHHHHCCEEEEEEEECCCCSHHHHHHTTCCCTTTTCCCCCHHHHHHHHHHHHTT
T ss_pred ecCCCCCCHHHHHHHHHHHHhcCCCceeEEEeccccChhHHHhhCcccccccCCCCCHHHHHHHHHHHHhc
Confidence 666677899999999999999995 8899988875432 122222 345677787777777665
No 8
>2yx0_A Radical SAM enzyme; predicted tRNA modification enzyme, metal binding protein, structural genomics, NPPSFA; 2.21A {Pyrococcus horikoshii}
Probab=99.26 E-value=5.7e-11 Score=113.42 Aligned_cols=181 Identities=14% Similarity=0.113 Sum_probs=125.8
Q ss_pred CCCCCCCCCcccCCCC------CCCCCCchhHHHHHHHHHH------C--------------CCcEEEEe-eecCCCCCC
Q 019890 137 DTCTRGCRFCNVKTSR------APPPPDPDEPTNVAEAIAS------W--------------GLDYVVIT-SVDRDDLAD 189 (334)
Q Consensus 137 dgCtr~C~FC~V~~~r------~p~~ld~~Ep~~~A~av~~------~--------------GlkeVVLT-Sv~rdDl~d 189 (334)
++|+.+|.||..+... ....++++|+.+.+....+ . .+++|+++ |++. +-.
T Consensus 79 ~gCnl~C~fC~~~~~~~~~~~~~~~~~~~eei~~~i~~~~~~~~~~~~g~~~v~~~~~~e~~~~~~v~~sggGEP--ll~ 156 (342)
T 2yx0_A 79 AWCTHNCIFCWRPMENFLGTELPQPWDDPAFIVEESIKAQRKLLIGYKGNPKVDKKKFEEAWNPTHAAISLSGEP--MLY 156 (342)
T ss_dssp SCCSBCCTTCCCSSSSCSCSSCCSSCCCHHHHHHHHHHHHHHHHTTCC--CCSCHHHHHHHTSCCEEEECSSSCG--GGS
T ss_pred hhhhCcCcccCCCCCCCcccccccCcCCHHHHHHHHHHHHHHHhhccCCCcccchhhhhhccCCCEEEEcCCCcc--cch
Confidence 7999999999987432 1234677888776654422 1 25789998 5542 111
Q ss_pred chHHHHHHHHHHHHhhCCCCceeee-----------ecccc--ccccccchhhH-HHHHHhhcCC--CCCHHHHHHHHHH
Q 019890 190 QGSGHFAQTVRKLKELKPNMLIEAL-----------VAKSG--LNVFAHNIETV-EELQSAVRDH--RANFKQSLDVLMM 253 (334)
Q Consensus 190 ~Ga~~fa~lIr~Ik~~~P~i~vE~L-----------l~~ag--~dv~~HnlETv-~~l~~~Vr~r--~~tye~sL~vL~~ 253 (334)
..+.++++.+++. ++.+.+. +.++| ++.+...+++. +++++.++.. +.++++.++.|+.
T Consensus 157 ---~~l~~ll~~~~~~--g~~i~l~TNG~~~e~l~~L~~~g~~~~~l~isld~~~~e~~~~i~~~~~~~~~~~~~~~i~~ 231 (342)
T 2yx0_A 157 ---PYMGDLVEEFHKR--GFTTFIVTNGTIPERLEEMIKEDKLPTQLYVSITAPDIETYNSVNIPMIPDGWERILRFLEL 231 (342)
T ss_dssp ---TTHHHHHHHHHHT--TCEEEEEECSCCHHHHHHHHHTTCCCSEEEEEECCSSHHHHHHHHCBSSSCHHHHHHHHHHH
T ss_pred ---hhHHHHHHHHHHC--CCcEEEEcCCCcHHHHHHHHhcCCCCCEEEEEccCCCHHHHHHHhCCCcccHHHHHHHHHHH
Confidence 1578888888875 3333332 56665 77788888875 8899998821 4679999999999
Q ss_pred HHHhCCCcceEeeceEEecCCCHHHHHHHHHHHHHcCCcEEeeccCcCCCCCCCcc--cccCCHHHHHHHHHHHHH
Q 019890 254 AKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMPV--SEYITPEAFERYRALGME 327 (334)
Q Consensus 254 ak~~~p~Gl~tkTgiMVGlGETdEE~~etl~~Lre~gvd~vtigqYlrP~~~h~~v--~~yv~P~~f~~~~~~a~~ 327 (334)
+++. |+.+...+++.-|++++++.++++++++++++.+.+.+|.......-+. ....+++++..+.+...+
T Consensus 232 l~~~---g~~v~i~~~l~~g~n~~~~~~l~~~l~~~~~~~i~l~~~~~~~~~~~~l~~~~~~~~e~~~~~~~~l~~ 304 (342)
T 2yx0_A 232 MRDL---PTRTVVRLTLVKGENMHSPEKYAKLILKARPMFVEAKAYMFVGYSRNRLTINNMPSHQDIREFAEALVK 304 (342)
T ss_dssp HTTC---SSEEEEEEEECTTTTCCCHHHHHHHHHHHCCSEEEEEECC------CCCCGGGSCCHHHHHHHHHHHHT
T ss_pred HHhC---CCCEEEEEEEECCccHHHHHHHHHHHHHcCCCEEEEEeeeecCCCcccccccCCCCHHHHHHHHHHHHH
Confidence 9875 5778888888669999999999999999999999998887432211222 335567777776666554
No 9
>2z2u_A UPF0026 protein MJ0257; metal binding protein; 2.40A {Methanocaldococcus jannaschii}
Probab=99.09 E-value=3.3e-10 Score=106.32 Aligned_cols=184 Identities=13% Similarity=0.139 Sum_probs=109.5
Q ss_pred EEEeec-CCCCCCCCCcccCCCC----------CCCCCCchhHHHHHHHHHH---------------------CCCcEEE
Q 019890 131 TIMILG-DTCTRGCRFCNVKTSR----------APPPPDPDEPTNVAEAIAS---------------------WGLDYVV 178 (334)
Q Consensus 131 tfm~ig-dgCtr~C~FC~V~~~r----------~p~~ld~~Ep~~~A~av~~---------------------~GlkeVV 178 (334)
-.+.++ ++|+.+|.||..+... ....++++|+.+.+....+ ..+++|+
T Consensus 53 l~i~~t~~~Cn~~C~fC~~~~~~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~~~~~~~g~~~v~~~~r~~~~~~~~~i~ 132 (311)
T 2z2u_A 53 IQCTPSVIWCQQNCIFCWRVLPRDIGIDISQIKEPKWEEPEVVYEKILAMHKRIIMGYAGVLDRVGEKKFKEALEPKHVA 132 (311)
T ss_dssp EEEESCSSCCSCC----------------CCSCCCCCCCHHHHHHHHHHHHHHHHHGGGGGHHHHCHHHHHHHTSCCEEE
T ss_pred EEeccChhHHhCcCcccCCCCCCcccccccccCccccCCHHHHHHHHHHHHHHHhhccCCCcCcchhhhhhhccCCCEEE
Confidence 345567 7999999999976421 1235788888776543321 2367899
Q ss_pred Ee-eecCCCCCCchHHHHHHHHHHHHhhCCCCceeee--------eccccccccccchhhH-HHHHHhhcCCC--CCHHH
Q 019890 179 IT-SVDRDDLADQGSGHFAQTVRKLKELKPNMLIEAL--------VAKSGLNVFAHNIETV-EELQSAVRDHR--ANFKQ 246 (334)
Q Consensus 179 LT-Sv~rdDl~d~Ga~~fa~lIr~Ik~~~P~i~vE~L--------l~~ag~dv~~HnlETv-~~l~~~Vr~r~--~tye~ 246 (334)
++ |+.. +-. ..+.++++.+++. ++.+.+. +..-+++.+...+++. ++.|+.++ +. .++++
T Consensus 133 ~s~gGEP--ll~---~~l~~li~~~~~~--g~~~~l~TNG~~~~~l~~L~~~~v~isld~~~~~~~~~i~-~~~~~~~~~ 204 (311)
T 2z2u_A 133 ISLSGEP--TLY---PYLDELIKIFHKN--GFTTFVVSNGILTDVIEKIEPTQLYISLDAYDLDSYRRIC-GGKKEYWES 204 (311)
T ss_dssp ECSSSCG--GGS---TTHHHHHHHHHHT--TCEEEEEECSCCHHHHHHCCCSEEEEECCCSSTTTC-----CCCHHHHHH
T ss_pred EeCCcCc--cch---hhHHHHHHHHHHC--CCcEEEECCCCCHHHHHhCCCCEEEEEeecCCHHHHHHHh-CCccchHHH
Confidence 99 5442 111 2478888888875 4444443 2223667777778874 78899988 45 67999
Q ss_pred HHHHHHHHHHhCCCcceEeeceEEecCCCHHHHHHHHHHHHHcCCcEEeeccCcCCC-CC-CCcccccCCHHHHHHHHHH
Q 019890 247 SLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRPS-KR-HMPVSEYITPEAFERYRAL 324 (334)
Q Consensus 247 sL~vL~~ak~~~p~Gl~tkTgiMVGlGETdEE~~etl~~Lre~gvd~vtigqYlrP~-~~-h~~v~~yv~P~~f~~~~~~ 324 (334)
.++.|+.+++. | .+...+++.-|+++ |+.++++++++++++.+.+.+|+.-. .+ .+......+++++..+.+.
T Consensus 205 v~~~i~~l~~~---g-~v~i~~~~~~g~n~-~~~~~~~~~~~~~~~~i~l~~~~p~g~~~~~~~~~~~~~~~e~~~~~~~ 279 (311)
T 2z2u_A 205 ILNTLDILKEK---K-RTCIRTTLIRGYND-DILKFVELYERADVHFIELKSYMHVGYSQKRLKKEDMLQHDEILKLAKM 279 (311)
T ss_dssp HHHHHHHHTTS---S-SEEEEEEECTTTTC-CGGGTHHHHHHHTCSEEEEEECC------------CCCCHHHHHHHHHH
T ss_pred HHHHHHHHHhc---C-CEEEEEEEECCcch-hHHHHHHHHHHcCCCEEEEEeeEEccccccccccccCCCHHHHHHHHHH
Confidence 99999999875 4 34444443336666 89999999999999999999998532 22 2333456778887776665
Q ss_pred HHH
Q 019890 325 GME 327 (334)
Q Consensus 325 a~~ 327 (334)
..+
T Consensus 280 l~~ 282 (311)
T 2z2u_A 280 LDE 282 (311)
T ss_dssp HHT
T ss_pred HHH
Confidence 544
No 10
>3rfa_A Ribosomal RNA large subunit methyltransferase N; radical SAM, S-adenosylmethionine, iron sulfur cluster, oxidoreductase; HET: SAM; 2.05A {Escherichia coli} PDB: 3rf9_A*
Probab=98.67 E-value=3.3e-07 Score=90.91 Aligned_cols=187 Identities=9% Similarity=0.068 Sum_probs=120.5
Q ss_pred EEeecCCCCCCCCCcccCCCCCCCCCCchhHHHHHHHHHH----------CCCcEEEEee-ecCCCCCCchHHHHHHHHH
Q 019890 132 IMILGDTCTRGCRFCNVKTSRAPPPPDPDEPTNVAEAIAS----------WGLDYVVITS-VDRDDLADQGSGHFAQTVR 200 (334)
Q Consensus 132 fm~igdgCtr~C~FC~V~~~r~p~~ld~~Ep~~~A~av~~----------~GlkeVVLTS-v~rdDl~d~Ga~~fa~lIr 200 (334)
.+..+.||+.+|.||.-........++++|+.+++..+.. .+++.||++| +. |-.-.+.+.++|+
T Consensus 118 cVSsq~GCnl~C~fC~tg~~g~~r~Lt~eEIv~qv~~~~~~~~~~g~~gg~~i~~Ivf~GgGE----PLln~d~v~~~i~ 193 (404)
T 3rfa_A 118 CVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAKVTGQRPITNVVMMGMGE----PLLNLNNVVPAME 193 (404)
T ss_dssp ECCCEEECSSCCTTCGGGTTCEEEECCHHHHHHHHHHHHHHHCCHHHHSSCSCSEEEECSSSC----GGGCHHHHHHHHH
T ss_pred EEEeCCCCCCcCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHhhhcccccCCCccEEEEeCCCC----cccCHHHHHHHHH
Confidence 3445789999999998764321235899999988876643 2588999996 43 2222456788888
Q ss_pred HHHhhCCCC-----ceeee----------eccccccccccchhhH-HHHHHhhcC--CCCCHHHHHHHHHHHH-HhCC--
Q 019890 201 KLKELKPNM-----LIEAL----------VAKSGLNVFAHNIETV-EELQSAVRD--HRANFKQSLDVLMMAK-DYVP-- 259 (334)
Q Consensus 201 ~Ik~~~P~i-----~vE~L----------l~~ag~dv~~HnlETv-~~l~~~Vr~--r~~tye~sL~vL~~ak-~~~p-- 259 (334)
.+++. .++ .+-+. +.+.+...++--+.+. +.+|+.+.+ +++..++.++.++.+. +...
T Consensus 194 ~lk~~-~Gl~~s~r~itlsTnG~~p~i~~L~~~~d~~LaiSLka~d~e~~~~i~pv~~~~~le~vl~ai~~~~~~~g~~~ 272 (404)
T 3rfa_A 194 IMLDD-FGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQ 272 (404)
T ss_dssp HHHST-TTTCCCGGGEEEEESCCHHHHHHHHHHCCCEEEEECCCSSHHHHHHHSGGGGTSCHHHHHHHHHHHHHHCTTTT
T ss_pred HHHhh-cCcCcCCCceEEECCCcHHHHHHHHHhhcceEEecccCCCHHHHHHhcCCccCCCHHHHHHHHHHHHHHhCCCc
Confidence 88763 133 33322 3333222233333433 566666652 3678999999986553 3211
Q ss_pred -CcceEeeceEEecCCCHHHHHHHHHHHHHcCCcEEeeccCcCCCCCCCcccccCCHHHHHHHHHHHHHh
Q 019890 260 -AGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMPVSEYITPEAFERYRALGMEM 328 (334)
Q Consensus 260 -~Gl~tkTgiMVGlGETdEE~~etl~~Lre~gvd~vtigqYlrP~~~h~~v~~yv~P~~f~~~~~~a~~~ 328 (334)
. +.+.+-+|=|+..+++|+.++.++|+++++ .|.+-+|. |... .-.+-.++++.+.++++..+.
T Consensus 273 ~~-V~ie~vLI~GvNDs~e~~~~La~ll~~l~~-~VnLIpyn-P~~~--~~~~~ps~e~i~~f~~iL~~~ 337 (404)
T 3rfa_A 273 GR-VTIEYVMLDHVNDGTEHAHQLAELLKDTPC-KINLIPWN-PFPG--APYGRSSNSRIDRFSKVLMSY 337 (404)
T ss_dssp TC-EEEEEEEBTTTTCSHHHHHHHHHHTTTSCE-EEEEEECC-CCTT--CCCCBCCHHHHHHHHHHHHHT
T ss_pred cc-EEEEEEEecCCCCCHHHHHHHHHHHHcCCC-cEEEEecc-CCCC--CCCCCCCHHHHHHHHHHHHHc
Confidence 3 566777777999999999999999999885 56666665 3221 112334677888888887765
No 11
>2a5h_A L-lysine 2,3-aminomutase; radical SAM, four-iron-four-sulfur cluster, 4Fe4S, FS4, SAM, adenosylmethionine, alpha-beta channel; HET: SAM LYS PLP; 2.10A {Clostridium subterminale}
Probab=98.62 E-value=4.2e-07 Score=89.87 Aligned_cols=151 Identities=14% Similarity=0.200 Sum_probs=100.7
Q ss_pred EEEEeecCCCCCCCCCcccCCCCC-C-CCCCchhHHHHHHHHHH-CCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhC
Q 019890 130 ATIMILGDTCTRGCRFCNVKTSRA-P-PPPDPDEPTNVAEAIAS-WGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELK 206 (334)
Q Consensus 130 atfm~igdgCtr~C~FC~V~~~r~-p-~~ld~~Ep~~~A~av~~-~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~ 206 (334)
...+.++++|+.+|+||......+ . ..++.+++.+.++.+.+ .|+++|+|||++---+++ ..|.++++.+++.
T Consensus 116 ~v~l~vT~~Cnl~C~yC~~~~~~~~~~~~ls~eei~~~i~~i~~~~gi~~V~ltGGEPll~~d---~~L~~il~~l~~~- 191 (416)
T 2a5h_A 116 RVLLLITDMCSMYCRHCTRRRFAGQSDDSMPMERIDKAIDYIRNTPQVRDVLLSGGDALLVSD---ETLEYIIAKLREI- 191 (416)
T ss_dssp EEEEEEESCCSSCCTTCTTTTTTTSSSSBCCHHHHHHHHHHHHTCTTCCEEEEEESCTTSSCH---HHHHHHHHHHHTS-
T ss_pred EEEEecCCCccccCcCCCCcccCCCccCCCCHHHHHHHHHHHHhcCCCcEEEEECCCCCCCCH---HHHHHHHHHHHhc-
Confidence 345567999999999997764332 1 34789999999998888 799999999986321222 3578888888874
Q ss_pred CCC-ceeee------------------eccccccccccchhhHHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCcceEee-
Q 019890 207 PNM-LIEAL------------------VAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKT- 266 (334)
Q Consensus 207 P~i-~vE~L------------------l~~ag~dv~~HnlETv~~l~~~Vr~r~~tye~sL~vL~~ak~~~p~Gl~tkT- 266 (334)
+++ .+.+- |.++ +.+...++.. .++.-+ ++.++.|+++++. |+.++.
T Consensus 192 ~~v~~i~i~Tng~~~~p~~it~e~l~~L~~~--~~v~Isl~~~-------~~~ei~-~~v~~ai~~L~~a---Gi~v~i~ 258 (416)
T 2a5h_A 192 PHVEIVRIGSRTPVVLPQRITPELVNMLKKY--HPVWLNTHFN-------HPNEIT-EESTRACQLLADA---GVPLGNQ 258 (416)
T ss_dssp TTCCEEEEECSHHHHCGGGCCHHHHHHHGGG--CSEEEEECCC-------SGGGCC-HHHHHHHHHHHHT---TCCEEEE
T ss_pred CCccEEEEEecccccccccCCHHHHHHHHhc--CcEEEEEecC-------CHHHHh-HHHHHHHHHHHHc---CCEEEEE
Confidence 443 12111 1121 1111111110 000112 7888999999886 565544
Q ss_pred -ceEEecCCCHHHHHHHHHHHHHcCCcEEeec
Q 019890 267 -SIMLGCGETPDQVVSTMEKVRAAGVDVMTFG 297 (334)
Q Consensus 267 -giMVGlGETdEE~~etl~~Lre~gvd~vtig 297 (334)
.++-|+.++.+++.++++++.++|++...++
T Consensus 259 ~vll~GvNd~~e~l~~l~~~l~~lgv~~~~i~ 290 (416)
T 2a5h_A 259 SVLLRGVNDCVHVMKELVNKLVKIRVRPYYIY 290 (416)
T ss_dssp EECCTTTTCSHHHHHHHHHHHHHTTEEEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHcCCceEEEe
Confidence 4444899999999999999999999987776
No 12
>3can_A Pyruvate-formate lyase-activating enzyme; structural genomics, pyruvate-formate lyase-activating enzym MCSG, APC20359.1; 1.80A {Bacteroides vulgatus atcc 8482}
Probab=97.67 E-value=0.00031 Score=60.35 Aligned_cols=149 Identities=9% Similarity=0.096 Sum_probs=92.4
Q ss_pred CCCCCCchhHHHHHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhCCCCceeeeeccccccccccchhhH-H
Q 019890 153 APPPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVAKSGLNVFAHNIETV-E 231 (334)
Q Consensus 153 ~p~~ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~P~i~vE~Ll~~ag~dv~~HnlETv-~ 231 (334)
|.+.+.++-+.+.++.+++.|+.-.+.|.+. +. .+.++.+.+. . |.+.--++.. +
T Consensus 12 GEPll~~~~~~~l~~~~~~~g~~~~l~TNG~---l~-------~~~~~~l~~~-~-------------d~v~isld~~~~ 67 (182)
T 3can_A 12 GEPLLHPEFLIDILKRCGQQGIHRAVDTTLL---AR-------KETVDEVMRN-C-------------ELLLIDLKSMDS 67 (182)
T ss_dssp STGGGSHHHHHHHHHHHHHTTCCEEEECTTC---CC-------HHHHHHHHHT-C-------------SEEEEECCCSCH
T ss_pred ccccCCHHHHHHHHHHHHHCCCcEEEECCCC---CC-------HHHHHHHHhh-C-------------CEEEEECCCCCH
Confidence 3334555444677777788888766666664 22 1233444332 1 1111111221 5
Q ss_pred HHHHhhcCCCCCHHHHHHHHHHHHHhCCCcceEeeceEEecCCCHHHHHHHHHHHHHc-CC-cEEeeccCcCCCCC----
Q 019890 232 ELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAA-GV-DVMTFGQYMRPSKR---- 305 (334)
Q Consensus 232 ~l~~~Vr~r~~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGlGETdEE~~etl~~Lre~-gv-d~vtigqYlrP~~~---- 305 (334)
..|..++ +.++++.++.|+.+++.... +.+.+.++=|+.++.+|+.+.+++++++ |+ +.+.+.+|..-...
T Consensus 68 ~~~~~~~--g~~~~~i~~~i~~l~~~g~~-v~i~~~v~~~~n~n~~~~~~~~~~~~~~~g~~~~~~l~~~~p~g~~~~~~ 144 (182)
T 3can_A 68 TVHQTFC--DVPNELILKNIRRVAEADFP-YYIRIPLIEGVNADEKNIKLSAEFLASLPRHPEIINLLPYHDIGKGKHAK 144 (182)
T ss_dssp HHHHHHH--SSCSHHHHHHHHHHHHTTCC-EEEEEEECBTTTCSHHHHHHHHHHHHHSSSCCSEEEEEECCC--------
T ss_pred HHHHHHh--CCCHHHHHHHHHHHHhCCCe-EEEEEEEECCCCCCHHHHHHHHHHHHhCcCccceEEEecCcccCHHHHHH
Confidence 6677777 35579999999999886333 5667777778889999999999999999 99 89999888743321
Q ss_pred ---CCcccc--cCCHHH--HHHHHHHHHHh
Q 019890 306 ---HMPVSE--YITPEA--FERYRALGMEM 328 (334)
Q Consensus 306 ---h~~v~~--yv~P~~--f~~~~~~a~~~ 328 (334)
..++.. ..++++ .+.+++++.+.
T Consensus 145 l~~~y~~~~~~~~~~e~~~l~~~~~~~~~~ 174 (182)
T 3can_A 145 LGSIYNPKGYKMQTPSEEVQQQCIQILTDY 174 (182)
T ss_dssp ----------CCBCCCHHHHHHHHHHHHHT
T ss_pred hCCcCcccCCCCCCHHHHHHHHHHHHHHHc
Confidence 122322 234566 78888888765
No 13
>2cw6_A Hydroxymethylglutaryl-COA lyase, mitochondrial; HMG-COA lyase, ketogenic enzyme; HET: 3HG; 2.10A {Homo sapiens} PDB: 3mp3_A* 3mp4_A 3mp5_A*
Probab=96.99 E-value=0.0034 Score=59.03 Aligned_cols=151 Identities=13% Similarity=0.173 Sum_probs=101.0
Q ss_pred CCCCchhHHHHHHHHHHCCCcEEEEeeecC-CCCCCchHHHHHHHHHHHHhhCCCCceeee---------eccccccccc
Q 019890 155 PPPDPDEPTNVAEAIASWGLDYVVITSVDR-DDLADQGSGHFAQTVRKLKELKPNMLIEAL---------VAKSGLNVFA 224 (334)
Q Consensus 155 ~~ld~~Ep~~~A~av~~~GlkeVVLTSv~r-dDl~d~Ga~~fa~lIr~Ik~~~P~i~vE~L---------l~~ag~dv~~ 224 (334)
..++.++-.++++++.+.|+++|-+++... .+.|-.+ .+.++++.+++ .|++.+-++ ..++|.+++.
T Consensus 22 ~~~~~e~k~~i~~~L~~~Gv~~IE~g~~~~~~~~p~~~--d~~~~~~~~~~-~~~~~~~~l~~~~~~i~~a~~ag~~~v~ 98 (298)
T 2cw6_A 22 NIVSTPVKIKLIDMLSEAGLSVIETTSFVSPKWVPQMG--DHTEVLKGIQK-FPGINYPVLTPNLKGFEAAVAAGAKEVV 98 (298)
T ss_dssp SCCCHHHHHHHHHHHHHTTCSEECCEECCCTTTCGGGT--THHHHHHHSCC-CTTCBCCEECCSHHHHHHHHHTTCSEEE
T ss_pred CCCCHHHHHHHHHHHHHcCcCEEEECCCcCcccccccC--CHHHHHHHHhh-CCCCEEEEEcCCHHhHHHHHHCCCCEEE
Confidence 358899999999999999999998887432 2223211 23467777765 466554443 5667887766
Q ss_pred cchhhHH-HHHHhhc-CCCCCHHHHHHHHHHHHHhCCCcceEeeceEEecC-C-----CHHHHHHHHHHHHHcCCcEEee
Q 019890 225 HNIETVE-ELQSAVR-DHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCG-E-----TPDQVVSTMEKVRAAGVDVMTF 296 (334)
Q Consensus 225 HnlETv~-~l~~~Vr-~r~~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGlG-E-----TdEE~~etl~~Lre~gvd~vti 296 (334)
-..-+.+ .....++ ++...++...+.++.+|+. |+.+..+++.-|| | +.+++.+.++.+.++|++.+.+
T Consensus 99 i~~~~sd~~~~~~~~~~~~e~l~~~~~~i~~a~~~---G~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Ga~~i~l 175 (298)
T 2cw6_A 99 IFGAASELFTKKNINCSIEESFQRFDAILKAAQSA---NISVRGYVSCALGCPYEGKISPAKVAEVTKKFYSMGCYEISL 175 (298)
T ss_dssp EEEESCHHHHHHHHSCCHHHHHHHHHHHHHHHHHT---TCEEEEEEETTTCBTTTBSCCHHHHHHHHHHHHHTTCSEEEE
T ss_pred EEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHC---CCeEEEEEEEEeeCCcCCCCCHHHHHHHHHHHHHcCCCEEEe
Confidence 5543333 3344444 1112345555677778875 7888888886663 3 6789999999999999999988
Q ss_pred ccCcCCCCCCCcccccCCHHHHHHH
Q 019890 297 GQYMRPSKRHMPVSEYITPEAFERY 321 (334)
Q Consensus 297 gqYlrP~~~h~~v~~yv~P~~f~~~ 321 (334)
.. + ..+.+|+++..+
T Consensus 176 ~D----T------~G~~~P~~~~~l 190 (298)
T 2cw6_A 176 GD----T------IGVGTPGIMKDM 190 (298)
T ss_dssp EE----T------TSCCCHHHHHHH
T ss_pred cC----C------CCCcCHHHHHHH
Confidence 71 1 246788875544
No 14
>4fhd_A Spore photoproduct lyase; partial TIM-barrel, DNA repair, damaged DNA; HET: EEM 0TT; 2.00A {Geobacillus thermodenitrificans} PDB: 4fhc_A* 4fhg_A* 4fhe_A* 4fhf_A*
Probab=96.69 E-value=0.0029 Score=61.95 Aligned_cols=159 Identities=13% Similarity=0.164 Sum_probs=92.9
Q ss_pred EEeecCCCCCCCCCcccCCCC--CC---CCCCchhHHHHHHH-HHHCCCc-EEEEeeecCCCCCCch-HHHHHHHHHHHH
Q 019890 132 IMILGDTCTRGCRFCNVKTSR--AP---PPPDPDEPTNVAEA-IASWGLD-YVVITSVDRDDLADQG-SGHFAQTVRKLK 203 (334)
Q Consensus 132 fm~igdgCtr~C~FC~V~~~r--~p---~~ld~~Ep~~~A~a-v~~~Glk-eVVLTSv~rdDl~d~G-a~~fa~lIr~Ik 203 (334)
.+-...||..+|.||-....- ++ ...+.+|+.+.++. +.+.+-+ .++-+|.+.|-++-.. .....++|+.+.
T Consensus 110 ~ln~y~GC~~~C~YCYl~~~~~~~~~I~v~vN~~eiL~~l~~~l~~~~~~~~~i~~g~~TDpyp~E~~~~ltr~~le~l~ 189 (368)
T 4fhd_A 110 AIPLATGCMGHCHYCYLQTTLGSKPYIRVYVNLDDIFAQAQKYINERAPEITRFEAACTSDIVGIDHLTHSLKKAIEFIG 189 (368)
T ss_dssp ECCSEEBCSCCCTTCTHHHHTTTCCSEEEECCHHHHHHHHHHHHHHHTTSCEEEESCSSBCHHHHHTTTCHHHHHHHHHH
T ss_pred eeCCccCCCCCCceEeccccCCCCCeEEEecCHHHHHHHHHHHHhhcCCCceEEEEEcCCCcchhhHHHhHHHHHHHHHH
Confidence 456788999999999876322 12 13578888877653 4443333 4455666554322100 123456666665
Q ss_pred hhCCCCceeeeecccccc---ccccc--------hhhHHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCcceEeeceEEe-
Q 019890 204 ELKPNMLIEALVAKSGLN---VFAHN--------IETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLG- 271 (334)
Q Consensus 204 ~~~P~i~vE~Ll~~ag~d---v~~Hn--------lETv~~l~~~Vr~r~~tye~sL~vL~~ak~~~p~Gl~tkTgiMVG- 271 (334)
+ .++..+++.-+.+.+| -++|+ +.+ +.+-+.+-++..+.+++|+.++++++. |+ .+++++.
T Consensus 190 ~-~~~~~v~i~TKs~lid~L~~l~~~~~v~V~~Sitt-~~l~r~~EP~aps~~~RL~Ai~~l~~a---Gi--pv~v~iaP 262 (368)
T 4fhd_A 190 A-TDYGRLRFVTKYEHVDHLLDARHNGKTRFRFSINS-RYVINHFEPGTSSFDGRLAAARKVAGA---GY--KLGFVVAP 262 (368)
T ss_dssp H-CSSEEEEEEESCCCCGGGTTCCCTTCEEEEEEECC-HHHHHHHCTTSCCHHHHHHHHHHHHHT---TC--EEEEEEEE
T ss_pred h-CCCceEEEEeCCcCHHHHHhcCcCCceEEEEEEcC-HHHHHHcCCCCCCHHHHHHHHHHHHHC---CC--eEEEEEeC
Confidence 5 4554555551111111 12222 222 677777876777899999999999996 75 5666666
Q ss_pred -c-CCCH-HHHHHHHHHHHH----cCCcEEeec
Q 019890 272 -C-GETP-DQVVSTMEKVRA----AGVDVMTFG 297 (334)
Q Consensus 272 -l-GETd-EE~~etl~~Lre----~gvd~vtig 297 (334)
+ ++++ ++..+.++.|.+ .++..++++
T Consensus 263 IiP~~~~~e~y~~lle~l~~~l~~~~~~~v~~e 295 (368)
T 4fhd_A 263 IYRHEGWERGYFELFQELARQLEGMDLSDLTFE 295 (368)
T ss_dssp ECCCTTHHHHHHHHHHHHHHHTTTSCCTTCEEE
T ss_pred cCCCCCCHHHHHHHHHHHHHhhchhhcceEEEE
Confidence 5 7777 466666665544 454445543
No 15
>1ydn_A Hydroxymethylglutaryl-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative; 2.30A {Brucella melitensis}
Probab=96.56 E-value=0.025 Score=52.82 Aligned_cols=134 Identities=15% Similarity=0.164 Sum_probs=88.2
Q ss_pred CCCchhHHHHHHHHHHCCCcEEEEeeecCCC-CCCchHHHHHHHHHHHHhhCCCCceeee---------ecccccccccc
Q 019890 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRDD-LADQGSGHFAQTVRKLKELKPNMLIEAL---------VAKSGLNVFAH 225 (334)
Q Consensus 156 ~ld~~Ep~~~A~av~~~GlkeVVLTSv~rdD-l~d~Ga~~fa~lIr~Ik~~~P~i~vE~L---------l~~ag~dv~~H 225 (334)
.++.++..++++++.+.|+++|-+++-.... +|. .....+.++.|++. +++.+-++ ..++|.+.+..
T Consensus 22 ~~~~e~k~~i~~~L~~~Gv~~IE~g~~~~~~~~p~--~~~~~e~~~~i~~~-~~~~v~~l~~n~~~i~~a~~~G~~~V~i 98 (295)
T 1ydn_A 22 FVPTADKIALINRLSDCGYARIEATSFVSPKWVPQ--LADSREVMAGIRRA-DGVRYSVLVPNMKGYEAAAAAHADEIAV 98 (295)
T ss_dssp CCCHHHHHHHHHHHTTTTCSEEEEEECSCTTTCGG--GTTHHHHHHHSCCC-SSSEEEEECSSHHHHHHHHHTTCSEEEE
T ss_pred CcCHHHHHHHHHHHHHcCcCEEEEccCcCcccccc--ccCHHHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHCCCCEEEE
Confidence 5889999999999999999999998743211 111 11345777777654 66655444 55667776554
Q ss_pred chhhHHHHHHhhcCCCCCHHHHH----HHHHHHHHhCCCcceEeeceEEecC------CCHHHHHHHHHHHHHcCCcEEe
Q 019890 226 NIETVEELQSAVRDHRANFKQSL----DVLMMAKDYVPAGTLTKTSIMLGCG------ETPDQVVSTMEKVRAAGVDVMT 295 (334)
Q Consensus 226 nlETv~~l~~~Vr~r~~tye~sL----~vL~~ak~~~p~Gl~tkTgiMVGlG------ETdEE~~etl~~Lre~gvd~vt 295 (334)
.+-+++...+. + -..++++.+ ++++.+|+. |+.+...++.-|| -+.+++.+.++.+.+.|+|.+.
T Consensus 99 ~~~~S~~h~~~-~-~~~~~~e~~~~~~~~v~~a~~~---G~~V~~~l~~~~~~e~~~~~~~~~~~~~~~~~~~~G~d~i~ 173 (295)
T 1ydn_A 99 FISASEGFSKA-N-INCTIAESIERLSPVIGAAIND---GLAIRGYVSCVVECPYDGPVTPQAVASVTEQLFSLGCHEVS 173 (295)
T ss_dssp EEESCHHHHHH-H-TSSCHHHHHHHHHHHHHHHHHT---TCEEEEEEECSSEETTTEECCHHHHHHHHHHHHHHTCSEEE
T ss_pred EEecCHHHHHH-H-cCCCHHHHHHHHHHHHHHHHHc---CCeEEEEEEEEecCCcCCCCCHHHHHHHHHHHHhcCCCEEE
Confidence 43233322222 1 134555555 557888885 6777766664342 2678899999999999999999
Q ss_pred ec
Q 019890 296 FG 297 (334)
Q Consensus 296 ig 297 (334)
+.
T Consensus 174 l~ 175 (295)
T 1ydn_A 174 LG 175 (295)
T ss_dssp EE
T ss_pred ec
Confidence 87
No 16
>1ydo_A HMG-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG,; 2.71A {Bacillus subtilis subsp}
Probab=96.22 E-value=0.027 Score=53.47 Aligned_cols=148 Identities=16% Similarity=0.157 Sum_probs=99.5
Q ss_pred CCCCchhHHHHHHHHHHCCCcEEEEeeecC-CCCCCchHHHHHHHHHHHHhhCCCCceeee---------eccccccccc
Q 019890 155 PPPDPDEPTNVAEAIASWGLDYVVITSVDR-DDLADQGSGHFAQTVRKLKELKPNMLIEAL---------VAKSGLNVFA 224 (334)
Q Consensus 155 ~~ld~~Ep~~~A~av~~~GlkeVVLTSv~r-dDl~d~Ga~~fa~lIr~Ik~~~P~i~vE~L---------l~~ag~dv~~ 224 (334)
..++.++-.++++++.+.|+++|-+++... .+.|..+ ...++++.+++. |+..+-.+ ..++|.+++.
T Consensus 23 ~~~~~e~k~~i~~~L~~~Gv~~IE~g~~~~~~~~p~~~--d~~~~~~~~~~~-~~~~~~~l~~~~~~i~~a~~~g~~~v~ 99 (307)
T 1ydo_A 23 VWIATEDKITWINQLSRTGLSYIEITSFVHPKWIPALR--DAIDVAKGIDRE-KGVTYAALVPNQRGLENALEGGINEAC 99 (307)
T ss_dssp SCCCHHHHHHHHHHHHTTTCSEEEEEECSCTTTCGGGT--THHHHHHHSCCC-TTCEEEEECCSHHHHHHHHHHTCSEEE
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEECCCcCcccccccC--CHHHHHHHhhhc-CCCeEEEEeCCHHhHHHHHhCCcCEEE
Confidence 357899999999999999999999987432 1223211 223566666543 66665554 4567777766
Q ss_pred cchhhHHH-HHHhhcCCCCCHHHH----HHHHHHHHHhCCCcceEeeceEEecC-C-----CHHHHHHHHHHHHHcCCcE
Q 019890 225 HNIETVEE-LQSAVRDHRANFKQS----LDVLMMAKDYVPAGTLTKTSIMLGCG-E-----TPDQVVSTMEKVRAAGVDV 293 (334)
Q Consensus 225 HnlETv~~-l~~~Vr~r~~tye~s----L~vL~~ak~~~p~Gl~tkTgiMVGlG-E-----TdEE~~etl~~Lre~gvd~ 293 (334)
-..-+.+. ....+ +.+.++. .+.++.+|+. |+.+...++.-|| | +.+.+.+.++.+.++|+|.
T Consensus 100 i~~~~sd~~~~~~l---~~s~~e~l~~~~~~v~~ak~~---G~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~Ga~~ 173 (307)
T 1ydo_A 100 VFMSASETHNRKNI---NKSTSESLHILKQVNNDAQKA---NLTTRAYLSTVFGCPYEKDVPIEQVIRLSEALFEFGISE 173 (307)
T ss_dssp EEEESSHHHHHTTT---CSCHHHHHHHHHHHHHHHHHT---TCEEEEEEECTTCBTTTBCCCHHHHHHHHHHHHHHTCSC
T ss_pred EEeecCHHHHHHHh---CCCHHHHHHHHHHHHHHHHHC---CCEEEEEEEEEecCCcCCCCCHHHHHHHHHHHHhcCCCE
Confidence 55444433 22223 3455555 5667777875 7888888888775 3 5789999999999999999
Q ss_pred EeeccCcCCCCCCCcccccCCHHHHHHH
Q 019890 294 MTFGQYMRPSKRHMPVSEYITPEAFERY 321 (334)
Q Consensus 294 vtigqYlrP~~~h~~v~~yv~P~~f~~~ 321 (334)
+.+. -+ ..+.+|+++.++
T Consensus 174 i~l~----DT------~G~~~P~~v~~l 191 (307)
T 1ydo_A 174 LSLG----DT------IGAANPAQVETV 191 (307)
T ss_dssp EEEE----CS------SCCCCHHHHHHH
T ss_pred EEEc----CC------CCCcCHHHHHHH
Confidence 8886 22 235778775544
No 17
>2ftp_A Hydroxymethylglutaryl-COA lyase; structural genomics, PSI, protein structure initiativ midwest center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=96.16 E-value=0.048 Score=51.26 Aligned_cols=134 Identities=21% Similarity=0.285 Sum_probs=89.8
Q ss_pred CCCCchhHHHHHHHHHHCCCcEEEEeeecC-CCCCCchHHHHHHHHHHHHhhCCCCceeee---------eccccccccc
Q 019890 155 PPPDPDEPTNVAEAIASWGLDYVVITSVDR-DDLADQGSGHFAQTVRKLKELKPNMLIEAL---------VAKSGLNVFA 224 (334)
Q Consensus 155 ~~ld~~Ep~~~A~av~~~GlkeVVLTSv~r-dDl~d~Ga~~fa~lIr~Ik~~~P~i~vE~L---------l~~ag~dv~~ 224 (334)
..++.++..++++++.+.|+++|-+.+... .+.+..+ .+.++++.+.+ .+++.+-++ ..++|.+.+.
T Consensus 25 ~~~~~e~k~~i~~~L~~~Gv~~IE~g~~~~~~~~~~~~--d~~~~~~~~~~-~~~~~~~~l~~~~~~i~~a~~aG~~~v~ 101 (302)
T 2ftp_A 25 QPIEVADKIRLVDDLSAAGLDYIEVGSFVSPKWVPQMA--GSAEVFAGIRQ-RPGVTYAALAPNLKGFEAALESGVKEVA 101 (302)
T ss_dssp SCCCHHHHHHHHHHHHHTTCSEEEEEECSCTTTCGGGT--THHHHHHHSCC-CTTSEEEEECCSHHHHHHHHHTTCCEEE
T ss_pred CCCCHHHHHHHHHHHHHcCcCEEEECCCcCcccccccc--CHHHHHHHhhh-cCCCEEEEEeCCHHHHHHHHhCCcCEEE
Confidence 357899999999999999999999887332 2233222 34466677764 356555444 4566777655
Q ss_pred cchhhHH-HHHHhhcCCCCCHHHHH----HHHHHHHHhCCCcceEeeceEEecC-C-----CHHHHHHHHHHHHHcCCcE
Q 019890 225 HNIETVE-ELQSAVRDHRANFKQSL----DVLMMAKDYVPAGTLTKTSIMLGCG-E-----TPDQVVSTMEKVRAAGVDV 293 (334)
Q Consensus 225 HnlETv~-~l~~~Vr~r~~tye~sL----~vL~~ak~~~p~Gl~tkTgiMVGlG-E-----TdEE~~etl~~Lre~gvd~ 293 (334)
...-+.+ ...+.++ .++++.+ ++++.+|+. |+.+...++.-|| | +.+++.+.++.+.+.|+|.
T Consensus 102 i~~~~s~~~~~~~~~---~s~ee~l~~~~~~v~~a~~~---G~~V~~~l~~~~~~e~~~~~~~~~~~~~~~~~~~~G~d~ 175 (302)
T 2ftp_A 102 VFAAASEAFSQRNIN---CSIKDSLERFVPVLEAARQH---QVRVRGYISCVLGCPYDGDVDPRQVAWVARELQQMGCYE 175 (302)
T ss_dssp EEEESCHHHHHHHHS---SCHHHHHHHHHHHHHHHHHT---TCEEEEEEECTTCBTTTBCCCHHHHHHHHHHHHHTTCSE
T ss_pred EEEecCHHHHHHHhC---CCHHHHHHHHHHHHHHHHHC---CCeEEEEEEEEeeCCcCCCCCHHHHHHHHHHHHHcCCCE
Confidence 4333323 2334443 4555554 566777775 6888877776664 3 5788999999999999999
Q ss_pred Eeec
Q 019890 294 MTFG 297 (334)
Q Consensus 294 vtig 297 (334)
+.+.
T Consensus 176 i~l~ 179 (302)
T 2ftp_A 176 VSLG 179 (302)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 9886
No 18
>3ewb_X 2-isopropylmalate synthase; LEUA, structural genomics, unknown function, amino-acid biosynthesis; 2.10A {Listeria monocytogenes str}
Probab=95.16 E-value=0.26 Score=46.26 Aligned_cols=143 Identities=13% Similarity=0.171 Sum_probs=89.8
Q ss_pred CCCchhHHHHHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhCCCCceeee--------------ecccccc
Q 019890 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEAL--------------VAKSGLN 221 (334)
Q Consensus 156 ~ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~P~i~vE~L--------------l~~ag~d 221 (334)
.++.++-.++++.+.+.|+++|=+++... ....+ +.+++|.+..++..+-.+ +..+|.+
T Consensus 23 ~~~~~~K~~i~~~L~~~Gv~~IE~g~p~~------~~~d~-e~v~~i~~~~~~~~i~~l~~~~~~di~~a~~~~~~ag~~ 95 (293)
T 3ewb_X 23 NFDVKEKIQIALQLEKLGIDVIEAGFPIS------SPGDF-ECVKAIAKAIKHCSVTGLARCVEGDIDRAEEALKDAVSP 95 (293)
T ss_dssp CCCHHHHHHHHHHHHHHTCSEEEEECGGG------CHHHH-HHHHHHHHHCCSSEEEEEEESSHHHHHHHHHHHTTCSSE
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeCCCC------CccHH-HHHHHHHHhcCCCEEEEEecCCHHHHHHHHHHHhhcCCC
Confidence 58899999999999999999998876321 12233 346666666677665554 2235666
Q ss_pred ccccchhhHHH-HHHhhcCCCCCHHHHHHH----HHHHHHhCCCcceEeeceEEecCCCHHHHHHHHHHHHHcCCcEEee
Q 019890 222 VFAHNIETVEE-LQSAVRDHRANFKQSLDV----LMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTF 296 (334)
Q Consensus 222 v~~HnlETv~~-l~~~Vr~r~~tye~sL~v----L~~ak~~~p~Gl~tkTgiMVGlGETdEE~~etl~~Lre~gvd~vti 296 (334)
.++-.+-+++. ....+ +.+.++.|+. ++.+|+. |+.+.-+++-+.--+.+.+.+.++.+.++|++.+.+
T Consensus 96 ~v~i~~~~Sd~~~~~nl---~~s~~e~l~~~~~~v~~a~~~---g~~v~~~~~d~~~~~~~~~~~~~~~~~~~G~~~i~l 169 (293)
T 3ewb_X 96 QIHIFLATSDVHMEYKL---KMSRAEVLASIKHHISYARQK---FDVVQFSPEDATRSDRAFLIEAVQTAIDAGATVINI 169 (293)
T ss_dssp EEEEEEECSHHHHHHTT---CCCHHHHHHHHHHHHHHHHTT---CSCEEEEEETGGGSCHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEEecCcHHHHHHHh---CCCHHHHHHHHHHHHHHHHhC---CCEEEEEeccCCCCCHHHHHHHHHHHHHcCCCEEEe
Confidence 65544434433 22233 3566666654 4555554 555554444332345566789999999999999988
Q ss_pred ccCcCCCCCCCcccccCCHHHHHHH
Q 019890 297 GQYMRPSKRHMPVSEYITPEAFERY 321 (334)
Q Consensus 297 gqYlrP~~~h~~v~~yv~P~~f~~~ 321 (334)
. -+ ..+.+|+++..+
T Consensus 170 ~----DT------~G~~~P~~v~~l 184 (293)
T 3ewb_X 170 P----DT------VGYTNPTEFGQL 184 (293)
T ss_dssp E----CS------SSCCCHHHHHHH
T ss_pred c----CC------CCCCCHHHHHHH
Confidence 6 11 235777765544
No 19
>3eeg_A 2-isopropylmalate synthase; 11106D, beta barrel, PSI-II, structural genomics, protein structure initiative; 2.78A {Cytophaga hutchinsonii atcc 33406}
Probab=94.37 E-value=0.22 Score=47.56 Aligned_cols=146 Identities=16% Similarity=0.180 Sum_probs=90.6
Q ss_pred CCCchhHHHHHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhCCCCceeee--------------ecccccc
Q 019890 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEAL--------------VAKSGLN 221 (334)
Q Consensus 156 ~ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~P~i~vE~L--------------l~~ag~d 221 (334)
.++.++-.++++++.+.|+++|=+.+- -.....+ +.+++|.+..|+..+-.+ +..+|.+
T Consensus 24 ~~~~~~Kl~ia~~L~~~Gv~~IE~g~p------~~~~~d~-e~v~~i~~~~~~~~i~~l~r~~~~~i~~a~~al~~ag~~ 96 (325)
T 3eeg_A 24 QLNTEEKIIVAKALDELGVDVIEAGFP------VSSPGDF-NSVVEITKAVTRPTICALTRAKEADINIAGEALRFAKRS 96 (325)
T ss_dssp -CCTTHHHHHHHHHHHHTCSEEEEECT------TSCHHHH-HHHHHHHHHCCSSEEEEECCSCHHHHHHHHHHHTTCSSE
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeCC------CCCHhHH-HHHHHHHHhCCCCEEEEeecCCHHHHHHHHHhhcccCCC
Confidence 578999999999999999999988652 1122234 345667666677666555 2333777
Q ss_pred ccccchhhHHH-HHHhhc-CCCCCHHHHHHHHHHHHHhCCCcceEeeceEEecCCCHHHHHHHHHHHHHcCCcEEeeccC
Q 019890 222 VFAHNIETVEE-LQSAVR-DHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQY 299 (334)
Q Consensus 222 v~~HnlETv~~-l~~~Vr-~r~~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGlGETdEE~~etl~~Lre~gvd~vtigqY 299 (334)
+++-..-+++. ....++ ++....++..+.++.+|+. |+.+.-+.+.+.--+.+.+.+.++.+.++|++.|.+.
T Consensus 97 ~v~i~~s~Sd~~~~~~l~~s~~e~l~~~~~~v~~a~~~---g~~v~f~~~d~~~~~~~~~~~~~~~~~~~G~~~i~l~-- 171 (325)
T 3eeg_A 97 RIHTGIGSSDIHIEHKLRSTRENILEMAVAAVKQAKKV---VHEVEFFCEDAGRADQAFLARMVEAVIEAGADVVNIP-- 171 (325)
T ss_dssp EEEEEEECSHHHHC----CCCTTGGGTTHHHHHHHHTT---SSEEEEEEETGGGSCHHHHHHHHHHHHHHTCSEEECC--
T ss_pred EEEEEecccHHHHHHHhCCCHHHHHHHHHHHHHHHHHC---CCEEEEEccccccchHHHHHHHHHHHHhcCCCEEEec--
Confidence 66654433332 222232 2344566667788888885 5665444443333345666799999999999998875
Q ss_pred cCCCCCCCcccccCCHHHHHHH
Q 019890 300 MRPSKRHMPVSEYITPEAFERY 321 (334)
Q Consensus 300 lrP~~~h~~v~~yv~P~~f~~~ 321 (334)
-+ ..+.+|.++..+
T Consensus 172 --DT------~G~~~P~~v~~l 185 (325)
T 3eeg_A 172 --DT------TGYMLPWQYGER 185 (325)
T ss_dssp --BS------SSCCCHHHHHHH
T ss_pred --Cc------cCCcCHHHHHHH
Confidence 11 346777665444
No 20
>3ivs_A Homocitrate synthase, mitochondrial; TIM barrel, metalloprotein, transferase, claisen condensatio acid biosynthesis; 2.24A {Schizosaccharomyces pombe} PDB: 3ivt_A* 3ivu_A* 3mi3_A*
Probab=94.05 E-value=0.35 Score=48.04 Aligned_cols=147 Identities=18% Similarity=0.179 Sum_probs=92.7
Q ss_pred CCCCchhHHHHHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhCCCCceeee----------eccccccccc
Q 019890 155 PPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEAL----------VAKSGLNVFA 224 (334)
Q Consensus 155 ~~ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~P~i~vE~L----------l~~ag~dv~~ 224 (334)
.+++.++-.++++.+.+.|+++|-+.+- ..... ..+.++.|.+......+-.+ ..++|.+.++
T Consensus 56 ~~~s~eeKl~Ia~~L~~~Gv~~IEvG~P------~asp~-d~~~~~~i~~~~~~~~v~~~~r~~~~di~~A~~aG~~~V~ 128 (423)
T 3ivs_A 56 AFFDTEKKIQIAKALDNFGVDYIELTSP------VASEQ-SRQDCEAICKLGLKCKILTHIRCHMDDARVAVETGVDGVD 128 (423)
T ss_dssp CCCCHHHHHHHHHHHHHHTCSEEEECCT------TSCHH-HHHHHHHHHTSCCSSEEEEEEESCHHHHHHHHHTTCSEEE
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEEeec------ccCHH-HHHHHHHHHhcCCCCEEEEeeccChhhHHHHHHcCCCEEE
Confidence 3689999999999999999999988652 21222 23455666554222222111 4556777665
Q ss_pred cchhhHHHHHHh-hc-CCCCCHHHHHHHHHHHHHhCCCcceEeeceEEecCCCHHHHHHHHHHHHHcCCcEEeeccCcCC
Q 019890 225 HNIETVEELQSA-VR-DHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRP 302 (334)
Q Consensus 225 HnlETv~~l~~~-Vr-~r~~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGlGETdEE~~etl~~Lre~gvd~vtigqYlrP 302 (334)
-.+-+++...+. ++ ++....++..+.++.+|+. |+.+.-++.-++.-+.+.+.+.++.+.++|++.+.+.-
T Consensus 129 i~~s~Sd~~~~~~l~~s~~e~l~~~~~~v~~ak~~---G~~V~~~~eda~r~d~~~~~~v~~~~~~~Ga~~i~l~D---- 201 (423)
T 3ivs_A 129 VVIGTSQYLRKYSHGKDMTYIIDSATEVINFVKSK---GIEVRFSSEDSFRSDLVDLLSLYKAVDKIGVNRVGIAD---- 201 (423)
T ss_dssp EEEEC-------------CHHHHHHHHHHHHHHTT---TCEEEEEEESGGGSCHHHHHHHHHHHHHHCCSEEEEEE----
T ss_pred EEeeccHHHHHHHcCCCHHHHHHHHHHHHHHHHHC---CCEEEEEEccCcCCCHHHHHHHHHHHHHhCCCccccCC----
Confidence 554444322211 11 1122355666788888886 67787778888888899999999999999999987751
Q ss_pred CCCCCcccccCCHHHHHHH
Q 019890 303 SKRHMPVSEYITPEAFERY 321 (334)
Q Consensus 303 ~~~h~~v~~yv~P~~f~~~ 321 (334)
+ ..+.+|.++..+
T Consensus 202 T------vG~~~P~~v~~l 214 (423)
T 3ivs_A 202 T------VGCATPRQVYDL 214 (423)
T ss_dssp T------TSCCCHHHHHHH
T ss_pred c------cCcCCHHHHHHH
Confidence 1 246677765443
No 21
>3ble_A Citramalate synthase from leptospira interrogans; TIM barrel, licmsn, substrate specificity, acyltransferase, amino-acid biosynthesis; 2.00A {Leptospira interrogans} PDB: 3blf_A 3bli_A*
Probab=93.78 E-value=0.26 Score=47.16 Aligned_cols=143 Identities=20% Similarity=0.211 Sum_probs=90.4
Q ss_pred CCCchhHHHHHH-HHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHh------hCCCCceeee---------ecccc
Q 019890 156 PPDPDEPTNVAE-AIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKE------LKPNMLIEAL---------VAKSG 219 (334)
Q Consensus 156 ~ld~~Ep~~~A~-av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~------~~P~i~vE~L---------l~~ag 219 (334)
.++.++-.++++ ++.+.|+++|-+.+... ..... +.|+++++ ..|+..+-.+ ..++|
T Consensus 37 ~~~~~~k~~i~~~~L~~~Gv~~IE~g~~~~---~~~~~----~~v~~~~~~~~~~~~~~~~~i~~l~~~~~~i~~a~~~g 109 (337)
T 3ble_A 37 SFSTSEKLNIAKFLLQKLNVDRVEIASARV---SKGEL----ETVQKIMEWAATEQLTERIEILGFVDGNKTVDWIKDSG 109 (337)
T ss_dssp CCCHHHHHHHHHHHHHTTCCSEEEEEETTS---CTTHH----HHHHHHHHHHHHTTCGGGEEEEEESSTTHHHHHHHHHT
T ss_pred CcCHHHHHHHHHHHHHHcCCCEEEEeCCCC---ChhHH----HHHHHHHhhhhhhccCCCCeEEEEccchhhHHHHHHCC
Confidence 578999999999 99999999998877432 11122 33444443 2344444443 45677
Q ss_pred ccccccchhhHH-HHHHhhcCCCCCHHHHH----HHHHHHHHhCCCcceEeeceEE---ecCCCHHHHHHHHHHHHHcCC
Q 019890 220 LNVFAHNIETVE-ELQSAVRDHRANFKQSL----DVLMMAKDYVPAGTLTKTSIML---GCGETPDQVVSTMEKVRAAGV 291 (334)
Q Consensus 220 ~dv~~HnlETv~-~l~~~Vr~r~~tye~sL----~vL~~ak~~~p~Gl~tkTgiMV---GlGETdEE~~etl~~Lre~gv 291 (334)
.|++.-..-+++ .....++ .+.++.+ +.++.+|+. |+.+.-+++- +.--+.+.+.+.++.+.++|+
T Consensus 110 ~~~v~i~~~~s~~~~~~~~~---~s~~e~l~~~~~~v~~ak~~---G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ga 183 (337)
T 3ble_A 110 AKVLNLLTKGSLHHLEKQLG---KTPKEFFTDVSFVIEYAIKS---GLKINVYLEDWSNGFRNSPDYVKSLVEHLSKEHI 183 (337)
T ss_dssp CCEEEEEEECSHHHHHHHTC---CCHHHHHHHHHHHHHHHHHT---TCEEEEEEETHHHHHHHCHHHHHHHHHHHHTSCC
T ss_pred CCEEEEEEecCHHHHHHHhC---CCHHHHHHHHHHHHHHHHHC---CCEEEEEEEECCCCCcCCHHHHHHHHHHHHHcCC
Confidence 777665554443 3334444 3555554 566667775 6766655554 333457889999999999999
Q ss_pred cEEeeccCcCCCCCCCcccccCCHHHHHHH
Q 019890 292 DVMTFGQYMRPSKRHMPVSEYITPEAFERY 321 (334)
Q Consensus 292 d~vtigqYlrP~~~h~~v~~yv~P~~f~~~ 321 (334)
|.+.+. -+ ..+.+|+++.++
T Consensus 184 ~~i~l~----DT------~G~~~P~~v~~l 203 (337)
T 3ble_A 184 ERIFLP----DT------LGVLSPEETFQG 203 (337)
T ss_dssp SEEEEE----CT------TCCCCHHHHHHH
T ss_pred CEEEEe----cC------CCCcCHHHHHHH
Confidence 999775 11 235677665443
No 22
>3rmj_A 2-isopropylmalate synthase; LEUA, truncation, neisseria MENI TIM barrel, catalytic domain, dimer, leucine biosynthesis, ketoisovalerate; 1.95A {Neisseria meningitidis}
Probab=93.29 E-value=0.73 Score=44.78 Aligned_cols=143 Identities=17% Similarity=0.205 Sum_probs=90.4
Q ss_pred CCCchhHHHHHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhCCCCceeee--------------ecccccc
Q 019890 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEAL--------------VAKSGLN 221 (334)
Q Consensus 156 ~ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~P~i~vE~L--------------l~~ag~d 221 (334)
+++.++-.++|+.+.+.|+++|=+.+-. .....+ +.|++|.+..++..+-.+ +..+|.+
T Consensus 30 ~~~~~~Kl~ia~~L~~~Gv~~IE~g~p~------~~~~d~-e~v~~i~~~~~~~~i~~l~r~~~~di~~a~~al~~ag~~ 102 (370)
T 3rmj_A 30 AMTKEEKIRVARQLEKLGVDIIEAGFAA------ASPGDF-EAVNAIAKTITKSTVCSLSRAIERDIRQAGEAVAPAPKK 102 (370)
T ss_dssp CCCHHHHHHHHHHHHHHTCSEEEEEEGG------GCHHHH-HHHHHHHTTCSSSEEEEEEESSHHHHHHHHHHHTTSSSE
T ss_pred CcCHHHHHHHHHHHHHcCCCEEEEeCCC------CCHHHH-HHHHHHHHhCCCCeEEEEecCCHHHHHHHHHHHhhCCCC
Confidence 5899999999999999999999886532 112233 445666666666655554 3347777
Q ss_pred ccccchhhHHH-HHHhhcCCCCCHHHHHHHH----HHHHHhCCCcceEeeceEEecCCCHHHHHHHHHHHHHcCCcEEee
Q 019890 222 VFAHNIETVEE-LQSAVRDHRANFKQSLDVL----MMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTF 296 (334)
Q Consensus 222 v~~HnlETv~~-l~~~Vr~r~~tye~sL~vL----~~ak~~~p~Gl~tkTgiMVGlGETdEE~~etl~~Lre~gvd~vti 296 (334)
+++-.+-+++. ....+ +.+.++.|+.+ +.+|+. |..+.-+..-+.--+.+.+.+.++.+.++|++.|.+
T Consensus 103 ~v~if~~~Sd~h~~~~l---~~s~~e~l~~~~~~v~~a~~~---g~~v~~~~ed~~r~~~~~~~~~~~~~~~~Ga~~i~l 176 (370)
T 3rmj_A 103 RIHTFIATSPIHMEYKL---KMKPKQVIEAAVKAVKIAREY---TDDVEFSCEDALRSEIDFLAEICGAVIEAGATTINI 176 (370)
T ss_dssp EEEEEEECSHHHHHHTT---CCCHHHHHHHHHHHHHHHTTT---CSCEEEEEETGGGSCHHHHHHHHHHHHHHTCCEEEE
T ss_pred EEEEEecCcHHHHHHHh---CCCHHHHHHHHHHHHHHHHHc---CCEEEEecCCCCccCHHHHHHHHHHHHHcCCCEEEe
Confidence 77665545443 33333 35667766654 455553 444433333333345566789999999999999888
Q ss_pred ccCcCCCCCCCcccccCCHHHHHHH
Q 019890 297 GQYMRPSKRHMPVSEYITPEAFERY 321 (334)
Q Consensus 297 gqYlrP~~~h~~v~~yv~P~~f~~~ 321 (334)
. -+ ..+.+|.++..+
T Consensus 177 ~----DT------~G~~~P~~~~~l 191 (370)
T 3rmj_A 177 P----DT------VGYSIPYKTEEF 191 (370)
T ss_dssp E----CS------SSCCCHHHHHHH
T ss_pred c----Cc------cCCcCHHHHHHH
Confidence 6 11 246677765444
No 23
>1nvm_A HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: a.5.7.1 c.1.10.5
Probab=92.43 E-value=0.29 Score=46.82 Aligned_cols=125 Identities=13% Similarity=0.114 Sum_probs=83.5
Q ss_pred CCCCchhHHHHHHHHHHCCCcEEEEe-----eecCCCCCCchH--HHHHHHHHHHHhhCCCCceeee-------------
Q 019890 155 PPPDPDEPTNVAEAIASWGLDYVVIT-----SVDRDDLADQGS--GHFAQTVRKLKELKPNMLIEAL------------- 214 (334)
Q Consensus 155 ~~ld~~Ep~~~A~av~~~GlkeVVLT-----Sv~rdDl~d~Ga--~~fa~lIr~Ik~~~P~i~vE~L------------- 214 (334)
.+++.++-.++++++.+.|+++|=+. .+.. ++.|. ..-.+.++++++..|++.+-++
T Consensus 25 ~~~~~e~k~~i~~~L~~~Gvd~IEvG~~~g~p~ss---p~~g~~~~~~~e~l~~i~~~~~~~~i~~l~~p~~~~~~~i~~ 101 (345)
T 1nvm_A 25 HQYTLDDVRAIARALDKAKVDSIEVAHGDGLQGSS---FNYGFGRHTDLEYIEAVAGEISHAQIATLLLPGIGSVHDLKN 101 (345)
T ss_dssp TCCCHHHHHHHHHHHHHHTCSEEECSCTTSTTCCB---TTTBCCSSCHHHHHHHHHTTCSSSEEEEEECBTTBCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCC---CcccCCCCCHHHHHHHHHhhCCCCEEEEEecCCcccHHHHHH
Confidence 36899999999999999999999885 1111 11110 1123567777776676655444
Q ss_pred eccccccccccchhhHHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCcceEeeceEEecCCCHHHHHHHHHHHHHcCCcEE
Q 019890 215 VAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVM 294 (334)
Q Consensus 215 l~~ag~dv~~HnlETv~~l~~~Vr~r~~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGlGETdEE~~etl~~Lre~gvd~v 294 (334)
..++|+|.+.-.. +....+...+.++.+|+. |+.+.-.++-...=+.+.+.+.++.+.+.|++.|
T Consensus 102 a~~aGvd~v~I~~------------~~s~~~~~~~~i~~ak~~---G~~v~~~~~~a~~~~~e~~~~ia~~~~~~Ga~~i 166 (345)
T 1nvm_A 102 AYQAGARVVRVAT------------HCTEADVSKQHIEYARNL---GMDTVGFLMMSHMIPAEKLAEQGKLMESYGATCI 166 (345)
T ss_dssp HHHHTCCEEEEEE------------ETTCGGGGHHHHHHHHHH---TCEEEEEEESTTSSCHHHHHHHHHHHHHHTCSEE
T ss_pred HHhCCcCEEEEEE------------eccHHHHHHHHHHHHHHC---CCEEEEEEEeCCCCCHHHHHHHHHHHHHCCCCEE
Confidence 2233443322110 122235667788888886 6777777776777788899999999999999998
Q ss_pred eec
Q 019890 295 TFG 297 (334)
Q Consensus 295 tig 297 (334)
.+.
T Consensus 167 ~l~ 169 (345)
T 1nvm_A 167 YMA 169 (345)
T ss_dssp EEE
T ss_pred EEC
Confidence 885
No 24
>2nx9_A Oxaloacetate decarboxylase 2, subunit alpha; carboxyltransferase structure, B enzymes, Zn2+ binding site, TIM-barrel fold, lyase; 1.70A {Vibrio cholerae}
Probab=92.30 E-value=0.8 Score=45.89 Aligned_cols=135 Identities=18% Similarity=0.192 Sum_probs=85.7
Q ss_pred CCCchhHHHHHHHHHHCCCcEEEEeeecCC-----CCCCchHHHHHHHHHHHHhhCCCCceeeeeccc---cccccccch
Q 019890 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRD-----DLADQGSGHFAQTVRKLKELKPNMLIEALVAKS---GLNVFAHNI 227 (334)
Q Consensus 156 ~ld~~Ep~~~A~av~~~GlkeVVLTSv~rd-----Dl~d~Ga~~fa~lIr~Ik~~~P~i~vE~Ll~~a---g~dv~~Hnl 227 (334)
.++.++-.++|+++.+.|+++|-..+...- -+.. . -.+.++.|++..|+..+.+++... |...|+-++
T Consensus 26 ~~~~~dkl~Ia~~L~~~Gv~~IE~g~~atF~~~~r~~~~-d---~~e~l~~i~~~~~~~~l~~l~R~~N~~G~~~~~ddv 101 (464)
T 2nx9_A 26 RLRIDDMLPIAQQLDQIGYWSLECWGGATFDSCIRFLGE-D---PWQRLRLLKQAMPNTPLQMLLRGQNLLGYRHYADDV 101 (464)
T ss_dssp CCCGGGTGGGHHHHHTSCCSEEEEEETTHHHHHHHTTCC-C---HHHHHHHHHHHCSSSCEEEEECGGGTTSSSCCCHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEeCcCccccchhhccCC-C---HHHHHHHHHHhCCCCeEEEEeccccccCcccccchh
Confidence 578899999999999999999999874210 0011 1 135567777666777666553222 222222221
Q ss_pred --hhHHHHHHh----hc--CCCCCHHHHHHHHHHHHHhCCCcceEeece--EEecCCCHHHHHHHHHHHHHcCCcEEeec
Q 019890 228 --ETVEELQSA----VR--DHRANFKQSLDVLMMAKDYVPAGTLTKTSI--MLGCGETPDQVVSTMEKVRAAGVDVMTFG 297 (334)
Q Consensus 228 --ETv~~l~~~----Vr--~r~~tye~sL~vL~~ak~~~p~Gl~tkTgi--MVGlGETdEE~~etl~~Lre~gvd~vtig 297 (334)
+.++..... ++ +.....+...+.++.+|+. |..+..++ ..|.--+.+.+.+.++.+.++|+|.|.|.
T Consensus 102 ~~~~v~~a~~~Gvd~i~if~~~sd~~ni~~~i~~ak~~---G~~v~~~i~~~~~~~~~~e~~~~~a~~l~~~Gad~I~l~ 178 (464)
T 2nx9_A 102 VDTFVERAVKNGMDVFRVFDAMNDVRNMQQALQAVKKM---GAHAQGTLCYTTSPVHNLQTWVDVAQQLAELGVDSIALK 178 (464)
T ss_dssp HHHHHHHHHHTTCCEEEECCTTCCTHHHHHHHHHHHHT---TCEEEEEEECCCCTTCCHHHHHHHHHHHHHTTCSEEEEE
T ss_pred hHHHHHHHHhCCcCEEEEEEecCHHHHHHHHHHHHHHC---CCEEEEEEEeeeCCCCCHHHHHHHHHHHHHCCCCEEEEc
Confidence 112222211 11 1234467778889999986 67665555 44556688999999999999999998774
No 25
>2ztj_A Homocitrate synthase; (beta/alpha)8 TIM barrel, substrate complex, amino-acid BIOS lysine biosynthesis, transferase; HET: AKG; 1.80A {Thermus thermophilus} PDB: 2ztk_A* 2zyf_A* 3a9i_A*
Probab=91.43 E-value=0.97 Score=43.91 Aligned_cols=143 Identities=13% Similarity=0.187 Sum_probs=92.7
Q ss_pred CCCchhHHHHHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhCCCCceeee----------ecccccccccc
Q 019890 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEAL----------VAKSGLNVFAH 225 (334)
Q Consensus 156 ~ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~P~i~vE~L----------l~~ag~dv~~H 225 (334)
+++.++..++|+++.+.|+++|-+.+.. .. ....+.++.|++..+...+-.+ ..++|.+++..
T Consensus 21 ~~~~~~k~~ia~~L~~~Gv~~IE~g~p~------~~-~~~~~~~~~i~~~~~~~~v~~~~r~~~~di~~a~~~g~~~v~i 93 (382)
T 2ztj_A 21 NFSTQDKVEIAKALDEFGIEYIEVTTPV------AS-PQSRKDAEVLASLGLKAKVVTHIQCRLDAAKVAVETGVQGIDL 93 (382)
T ss_dssp CCCHHHHHHHHHHHHHHTCSEEEECCTT------SC-HHHHHHHHHHHTSCCSSEEEEEEESCHHHHHHHHHTTCSEEEE
T ss_pred CcCHHHHHHHHHHHHHcCcCEEEEcCCc------CC-HHHHHHHHHHHhcCCCcEEEEEcccChhhHHHHHHcCCCEEEE
Confidence 6889999999999999999999886521 11 1234667777766544433222 44567776665
Q ss_pred chhhHHHHHHhhcCCCCCHHH----HHHHHHHHHHhCCCcceEeeceEEecCCCHHHHHHHHHHHHHcCCcEEeeccCcC
Q 019890 226 NIETVEELQSAVRDHRANFKQ----SLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMR 301 (334)
Q Consensus 226 nlETv~~l~~~Vr~r~~tye~----sL~vL~~ak~~~p~Gl~tkTgiMVGlGETdEE~~etl~~Lre~gvd~vtigqYlr 301 (334)
.+-+++.....+ +.+.++ ..+.++.+|+..+. +.+.-+++-++--+.+.+.+.++.+.++ ++.+.+.
T Consensus 94 ~~~~s~~~~~~~---~~s~~e~l~~~~~~v~~ak~~g~~-~~v~~~~ed~~~~~~~~~~~~~~~~~~~-a~~i~l~---- 164 (382)
T 2ztj_A 94 LFGTSKYLRAPH---GRDIPRIIEEAKEVIAYIREAAPH-VEVRFSAEDTFRSEEQDLLAVYEAVAPY-VDRVGLA---- 164 (382)
T ss_dssp EECC-----------CCCHHHHHHHHHHHHHHHHHHCTT-SEEEEEETTTTTSCHHHHHHHHHHHGGG-CSEEEEE----
T ss_pred EeccCHHHHHHh---CCCHHHHHHHHHHHHHHHHHcCCC-EEEEEEEEeCCCCCHHHHHHHHHHHHHh-cCEEEec----
Confidence 544443222222 345544 56777888887221 7777777777777889999999999999 9998775
Q ss_pred CCCCCCcccccCCHHHHHH
Q 019890 302 PSKRHMPVSEYITPEAFER 320 (334)
Q Consensus 302 P~~~h~~v~~yv~P~~f~~ 320 (334)
-+ ..+.+|.++..
T Consensus 165 DT------~G~~~P~~~~~ 177 (382)
T 2ztj_A 165 DT------VGVATPRQVYA 177 (382)
T ss_dssp ET------TSCCCHHHHHH
T ss_pred CC------CCCCCHHHHHH
Confidence 11 34567776444
No 26
>1rqb_A Transcarboxylase 5S subunit; TIM-barrel, carbamylated lysine, transfera; HET: KCX; 1.90A {Propionibacterium freudenreichii subspshermanii} SCOP: a.5.7.2 c.1.10.5 PDB: 1rqe_A 1rqh_A* 1rr2_A* 1u5j_A* 1s3h_A*
Probab=90.88 E-value=3.1 Score=42.49 Aligned_cols=135 Identities=15% Similarity=0.168 Sum_probs=87.0
Q ss_pred CCCchhHHHHHHHHHHCCCcEEEEeeecCC-----CCCCchHHHHHHHHHHHHhhCCCCceeeeeccc---cccccccch
Q 019890 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRD-----DLADQGSGHFAQTVRKLKELKPNMLIEALVAKS---GLNVFAHNI 227 (334)
Q Consensus 156 ~ld~~Ep~~~A~av~~~GlkeVVLTSv~rd-----Dl~d~Ga~~fa~lIr~Ik~~~P~i~vE~Ll~~a---g~dv~~Hnl 227 (334)
+++.++..++|+++.+.|+++|-+.+...- -+.. . =.+.++.|++..|+..+.+++... |...|+.++
T Consensus 43 ~~~tedKl~Ia~~L~~~Gv~~IE~G~patF~~~~rfl~~-d---~~e~lr~l~~~~~~~~l~~L~R~~N~~G~~~ypddv 118 (539)
T 1rqb_A 43 RMAMEDMVGACADIDAAGYWSVECWGGATYDSCIRFLNE-D---PWERLRTFRKLMPNSRLQMLLRGQNLLGYRHYNDEV 118 (539)
T ss_dssp CCCGGGTGGGHHHHHHTTCSEEEEEETTHHHHHHHTSCC-C---HHHHHHHHHHHCTTSCEEEEECGGGTTSSSCCCHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEeCcccccccchhccCC-C---HHHHHHHHHHhCCCCEEEEEeccccccCcccCcccc
Confidence 588999999999999999999999874210 0011 1 135566676666777666664222 222222221
Q ss_pred --hhHHHHHHh----hc--CCCCCHHHHHHHHHHHHHhCCCcceEeece--EEecCCCHHHHHHHHHHHHHcCCcEEeec
Q 019890 228 --ETVEELQSA----VR--DHRANFKQSLDVLMMAKDYVPAGTLTKTSI--MLGCGETPDQVVSTMEKVRAAGVDVMTFG 297 (334)
Q Consensus 228 --ETv~~l~~~----Vr--~r~~tye~sL~vL~~ak~~~p~Gl~tkTgi--MVGlGETdEE~~etl~~Lre~gvd~vtig 297 (334)
..++..... ++ +.....+...+.++.+|+. |..+...+ +.|..-+.+.+.+.++.+.++|+|.|.|.
T Consensus 119 ~~~~ve~a~~aGvd~vrIf~s~sd~~ni~~~i~~ak~~---G~~v~~~i~~~~~~~~~~e~~~~~a~~l~~~Gad~I~L~ 195 (539)
T 1rqb_A 119 VDRFVDKSAENGMDVFRVFDAMNDPRNMAHAMAAVKKA---GKHAQGTICYTISPVHTVEGYVKLAGQLLDMGADSIALK 195 (539)
T ss_dssp HHHHHHHHHHTTCCEEEECCTTCCTHHHHHHHHHHHHT---TCEEEEEEECCCSTTCCHHHHHHHHHHHHHTTCSEEEEE
T ss_pred cHHHHHHHHhCCCCEEEEEEehhHHHHHHHHHHHHHHC---CCeEEEEEEeeeCCCCCHHHHHHHHHHHHHcCCCEEEeC
Confidence 123332221 11 1234567778899999986 66665455 44556789999999999999999998775
No 27
>4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase; 1.64A {Vibrionales bacterium swat-3}
Probab=83.55 E-value=11 Score=34.30 Aligned_cols=105 Identities=19% Similarity=0.283 Sum_probs=70.1
Q ss_pred CCCchhHHHHHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhCCCCceee---e-------ecccccccccc
Q 019890 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEA---L-------VAKSGLNVFAH 225 (334)
Q Consensus 156 ~ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~P~i~vE~---L-------l~~ag~dv~~H 225 (334)
-.++++....++++.+.|++-|-+|--+ ++ -.+.|++|++..|++.+-. + ..++|.+++.
T Consensus 42 ~~~~~~a~~~a~al~~gGi~~iEvt~~t----~~-----a~e~I~~l~~~~~~~~iGaGTVlt~~~a~~Ai~AGA~fIv- 111 (232)
T 4e38_A 42 IDNAEDIIPLGKVLAENGLPAAEITFRS----DA-----AVEAIRLLRQAQPEMLIGAGTILNGEQALAAKEAGATFVV- 111 (232)
T ss_dssp CSSGGGHHHHHHHHHHTTCCEEEEETTS----TT-----HHHHHHHHHHHCTTCEEEEECCCSHHHHHHHHHHTCSEEE-
T ss_pred cCCHHHHHHHHHHHHHCCCCEEEEeCCC----CC-----HHHHHHHHHHhCCCCEEeECCcCCHHHHHHHHHcCCCEEE-
Confidence 3578999999999999999998887643 21 2478888888888753321 1 4445555442
Q ss_pred chhhHHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCcceEeeceEEecCCCHHHHHHHHHHHHHcCCcEEeeccC
Q 019890 226 NIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQY 299 (334)
Q Consensus 226 nlETv~~l~~~Vr~r~~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGlGETdEE~~etl~~Lre~gvd~vtigqY 299 (334)
. +.. ..++++.+++. |+.+-- |.. |.+|+.+. .++|+|.|-+|+.
T Consensus 112 ------------s-P~~----~~~vi~~~~~~---gi~~ip----Gv~-TptEi~~A----~~~Gad~vK~FPa 156 (232)
T 4e38_A 112 ------------S-PGF----NPNTVRACQEI---GIDIVP----GVN-NPSTVEAA----LEMGLTTLKFFPA 156 (232)
T ss_dssp ------------C-SSC----CHHHHHHHHHH---TCEEEC----EEC-SHHHHHHH----HHTTCCEEEECST
T ss_pred ------------e-CCC----CHHHHHHHHHc---CCCEEc----CCC-CHHHHHHH----HHcCCCEEEECcC
Confidence 1 222 24666777775 454433 433 88888777 4789999999864
No 28
>3no5_A Uncharacterized protein; PFAM DUF849 domain containing protein, structural genomics, center for structural genomics, JCSG; HET: MSE; 1.90A {Ralstonia eutropha}
Probab=83.24 E-value=2.1 Score=40.10 Aligned_cols=59 Identities=17% Similarity=0.280 Sum_probs=46.5
Q ss_pred CCCCchhHHHHHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhCCCCceee
Q 019890 155 PPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEA 213 (334)
Q Consensus 155 ~~ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~P~i~vE~ 213 (334)
.|+.++|+.+.|.+..+.|..-|-|=-.|.|.-+....+.|+++++.|++..|++.|.+
T Consensus 25 lPvTpeEia~~A~~~~~AGAaivHlHvRd~~G~~s~d~~~~~e~~~~IR~~~pd~ii~~ 83 (275)
T 3no5_A 25 VPITVSEQVESTQAAFEAGATLVHLHVRNDDETPTSNPDRFALVLEGIRKHAPGMITQV 83 (275)
T ss_dssp SCCSHHHHHHHHHHHHHHTCCEEEECEECTTSCEECCHHHHHHHHHHHHHHSTTCEEEE
T ss_pred CCCCHHHHHHHHHHHHHccCcEEEEeecCCCCCcCCCHHHHHHHHHHHHHhCCCeEEEe
Confidence 47899999999999999999888886555433334457899999999999988865543
No 29
>3e96_A Dihydrodipicolinate synthase; structural genomics, nysgrc, target 9375C, operon, PSI-2; 1.80A {Bacillus clausii ksm-k16} SCOP: c.1.10.0
Probab=81.70 E-value=5.6 Score=37.36 Aligned_cols=72 Identities=13% Similarity=0.243 Sum_probs=53.1
Q ss_pred CCHHHHHHHHHHHHHhCCCcceEeeceEEecCCCHHHHHHHHHHHHHcCCcEEeec-cCc-CCCCCCCcccccCCHHHHH
Q 019890 242 ANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFG-QYM-RPSKRHMPVSEYITPEAFE 319 (334)
Q Consensus 242 ~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGlGETdEE~~etl~~Lre~gvd~vtig-qYl-rP~~~h~~v~~yv~P~~f~ 319 (334)
-+.+++.++++.+.+...+ +.-+|+|.|.+-+|.++..+..+++|+|-+-+. +|. .|+ ..+-++
T Consensus 62 Ls~eEr~~v~~~~v~~~~g----rvpViaGvg~~t~~ai~la~~A~~~Gadavlv~~P~y~~~s----------~~~l~~ 127 (316)
T 3e96_A 62 LSLEEAKEEVRRTVEYVHG----RALVVAGIGYATSTAIELGNAAKAAGADAVMIHMPIHPYVT----------AGGVYA 127 (316)
T ss_dssp SCHHHHHHHHHHHHHHHTT----SSEEEEEECSSHHHHHHHHHHHHHHTCSEEEECCCCCSCCC----------HHHHHH
T ss_pred CCHHHHHHHHHHHHHHhCC----CCcEEEEeCcCHHHHHHHHHHHHhcCCCEEEEcCCCCCCCC----------HHHHHH
Confidence 4678889999998886543 345889998799999999999999999987764 332 222 123367
Q ss_pred HHHHHHHH
Q 019890 320 RYRALGME 327 (334)
Q Consensus 320 ~~~~~a~~ 327 (334)
+|+.+|..
T Consensus 128 ~f~~va~a 135 (316)
T 3e96_A 128 YFRDIIEA 135 (316)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 77777765
No 30
>3chv_A Prokaryotic domain of unknown function (DUF849) W barrel fold; TIM barrel fold, structural genomics, joint center for struc genomics; HET: MSE; 1.45A {Silicibacter pomeroyi dss-3} PDB: 3fa5_A
Probab=81.16 E-value=2.7 Score=39.50 Aligned_cols=59 Identities=15% Similarity=0.188 Sum_probs=46.5
Q ss_pred CCCCchhHHHHHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhCCCCceee
Q 019890 155 PPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEA 213 (334)
Q Consensus 155 ~~ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~P~i~vE~ 213 (334)
.|+.++|+.+.|.+..+.|..-|-|=-.|.|.-+....+.|.++++.|++..|++-|.+
T Consensus 29 lPvTpeEia~~A~~~~~AGAaivHlH~Rd~~G~ps~d~~~~~e~~~~IR~~~pd~ii~~ 87 (284)
T 3chv_A 29 VPITVSEQVESTQEAFEAGAAIAHCHVRNDDGTPSSDPDRFARLTEGLHTHCPGMIVQF 87 (284)
T ss_dssp CCCSHHHHHHHHHHHHHHTCCEEEECEECTTSCEECCHHHHHHHHHHHHHHSTTCEEEE
T ss_pred CCCCHHHHHHHHHHHHHcCCcEEEeeecCCCCCcCCCHHHHHHHHHHHHHhCCCeEEEe
Confidence 47899999999999999999988886655332334457899999999999888865543
No 31
>3dxi_A Putative aldolase; TIM barrel, 11107N, PSI2, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Bacteroides vulgatus atcc 8482}
Probab=81.05 E-value=5.6 Score=37.76 Aligned_cols=131 Identities=9% Similarity=0.085 Sum_probs=78.0
Q ss_pred CCCchhHHHHHHHHHHCCCcEEEEeeecC-CCCCCchHHHH--HHHHHHHHhhCCCCceeeeeccccccccccchhhHHH
Q 019890 156 PPDPDEPTNVAEAIASWGLDYVVITSVDR-DDLADQGSGHF--AQTVRKLKELKPNMLIEALVAKSGLNVFAHNIETVEE 232 (334)
Q Consensus 156 ~ld~~Ep~~~A~av~~~GlkeVVLTSv~r-dDl~d~Ga~~f--a~lIr~Ik~~~P~i~vE~Ll~~ag~dv~~HnlETv~~ 232 (334)
.++.++..++++++.+.|+++|=+++... .+.-++ .-.| .+.++.|++ .|++.+.+|+.... .++-| +..
T Consensus 20 ~~~~~~k~~ia~~L~~aGv~~IEvg~~~~p~~~f~~-~~~~~~~e~l~~i~~-~~~~~~~~L~r~~~--~~~~d---v~~ 92 (320)
T 3dxi_A 20 DFNSKIVDAYILAMNELPIDYLEVGYRNKPSKEYMG-KFGYTPVSVLKHLRN-ISTKKIAIMLNEKN--TTPED---LNH 92 (320)
T ss_dssp CCCHHHHHHHHHHHHTTTCCEEEEEECCSCCSSCCC-HHHHCCHHHHHHHHH-HCCSEEEEEEEGGG--CCGGG---HHH
T ss_pred cCCHHHHHHHHHHHHHhCCCEEEEecccCCcccccc-ccccChHHHHHHHhh-ccCCeEEEEecCCC--CChhh---HHH
Confidence 57899999999999999999999986431 111121 1122 356677776 47776666632211 11112 222
Q ss_pred HHHhhc---------CCCCCHHHHHHHHHHHHHhCCCcceEeeceEEecCCCHH-HHHHHHHHHHHcCCcEEeec
Q 019890 233 LQSAVR---------DHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPD-QVVSTMEKVRAAGVDVMTFG 297 (334)
Q Consensus 233 l~~~Vr---------~r~~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGlGETdE-E~~etl~~Lre~gvd~vtig 297 (334)
++.... +...+.++.++.++.+|+. |+.+.-.++..-+-++. ++++.+..+ +.|++.+.+.
T Consensus 93 ~~~a~~~Gvd~~ri~~~~~nle~~~~~v~~ak~~---G~~v~~~~~~~~~~~~~~~~l~~~~~~-~~G~~~i~l~ 163 (320)
T 3dxi_A 93 LLLPIIGLVDMIRIAIDPQNIDRAIVLAKAIKTM---GFEVGFNVMYMSKWAEMNGFLSKLKAI-DKIADLFCMV 163 (320)
T ss_dssp HHGGGTTTCSEEEEEECGGGHHHHHHHHHHHHTT---TCEEEEEECCTTTGGGSTTSGGGGGGG-TTTCSEEEEE
T ss_pred HHHhhhcCCCEEEEEecHHHHHHHHHHHHHHHHC---CCEEEEEEEeCCCCCCHHHHHHHHHHh-hCCCCEEEEC
Confidence 222111 0234578888999999986 67766666653243333 455555544 5689988875
No 32
>2y7e_A 3-keto-5-aminohexanoate cleavage enzyme; lyase, aldolase; 1.28A {Candidatus cloacamonas acidaminovoransorganism_taxid} PDB: 2y7d_A 2y7f_A* 2y7g_A
Probab=78.09 E-value=3 Score=39.12 Aligned_cols=59 Identities=20% Similarity=0.366 Sum_probs=46.0
Q ss_pred CCCCchhHHHHHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhCCCCceee
Q 019890 155 PPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEA 213 (334)
Q Consensus 155 ~~ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~P~i~vE~ 213 (334)
.|+.++|+.+.|.+..+.|..-|-|=-.|.|--+....+.|+++++.|++..|++-|.+
T Consensus 29 lPvTpeEia~~A~~a~~AGAaivHlHvRd~~G~ps~d~~~~~e~~~~IR~~~pd~ii~~ 87 (282)
T 2y7e_A 29 LPITPEEQAKEAKACFEAGARVIHLHIREDDGRPSQRLDRFQEAISAIREVVPEIIIQI 87 (282)
T ss_dssp CCCSHHHHHHHHHHHHHHTEEEEEECEECTTSCEECCHHHHHHHHHHHHHHCTTSEEEE
T ss_pred CCCCHHHHHHHHHHHHHcCCcEEEEeecCCCCCcCCCHHHHHHHHHHHHHHCCCeEEEe
Confidence 47899999999999999998887776655222244457899999999999888865544
No 33
>2wje_A CPS4B, tyrosine-protein phosphatase CPSB; capsule biogenesis/degradation, manganese, hydrolase, exopolysaccharide synthesis; 1.90A {Streptococcus pneumoniae} PDB: 2wjd_A 2wjf_A 3qy8_A
Probab=75.08 E-value=5.1 Score=35.72 Aligned_cols=48 Identities=10% Similarity=-0.089 Sum_probs=34.1
Q ss_pred HHHHHHHHHhCCCcceEeeceE--Ee-cCCCHHHHHHHHHHHHHcCCcEEeec
Q 019890 248 LDVLMMAKDYVPAGTLTKTSIM--LG-CGETPDQVVSTMEKVRAAGVDVMTFG 297 (334)
Q Consensus 248 L~vL~~ak~~~p~Gl~tkTgiM--VG-lGETdEE~~etl~~Lre~gvd~vtig 297 (334)
.++++.+++..-. +.+.++-+ .| +||+.......++.+++.|+-. ++|
T Consensus 151 ~~~l~~l~~~G~~-lEiN~~s~~~~~~~g~~~~~~~~~~~~~~~~gl~~-~~G 201 (247)
T 2wje_A 151 EKRVRELIDMGCY-TQVNSSHVLKPKLFGERYKFMKKRAQYFLEQDLVH-VIA 201 (247)
T ss_dssp HHHHHHHHHTTCE-EEEEHHHHSCCCSSCCSCHHHHHHHHHHHHTTCCS-EEE
T ss_pred HHHHHHHHHCCCE-EEEecHhhHhcCCCCCcChHHHHHHHHHHHCCCeE-EEE
Confidence 4677878775222 55666666 66 5988888888898888888764 455
No 34
>3c6c_A 3-keto-5-aminohexanoate cleavage enzyme; DUF849 family protein, TIM beta/alpha-barrel fold, structura genomics; HET: MSE; 1.72A {Ralstonia eutropha}
Probab=74.00 E-value=5.5 Score=37.99 Aligned_cols=59 Identities=14% Similarity=0.195 Sum_probs=46.0
Q ss_pred CCCCchhHHHHHHHHHHCCCcEEEEeeecC-CCCCCchHHHHHHHHHHHHhhCCCCceee
Q 019890 155 PPPDPDEPTNVAEAIASWGLDYVVITSVDR-DDLADQGSGHFAQTVRKLKELKPNMLIEA 213 (334)
Q Consensus 155 ~~ld~~Ep~~~A~av~~~GlkeVVLTSv~r-dDl~d~Ga~~fa~lIr~Ik~~~P~i~vE~ 213 (334)
.|+.++|+.+.|.+..+.|..-|-|=..|. |--+....+.|.++++.|++..|++-|.+
T Consensus 43 lPvTpeEIa~~A~~a~~AGAaivHlHvRd~~~G~ps~d~~~y~e~~~~IR~~~~d~ii~~ 102 (316)
T 3c6c_A 43 MPITPAQIADACVEAAKAGASVAHIHVRDPKTGGGSRDPVLFKEVVDRVRSSGTDIVLNL 102 (316)
T ss_dssp CCCSHHHHHHHHHHHHHHTCSEEEECEECTTTCCEECCHHHHHHHHHHHHTTTCCCEEEE
T ss_pred CCCCHHHHHHHHHHHHHcCCcEEEEeecCCCCCCcCCCHHHHHHHHHHHHHHCCCeEEEe
Confidence 478999999999999999999888866653 22344457899999999998777764443
No 35
>3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding, biotin, disease mutation, gluconeogenesis, ligase, lipid synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens} PDB: 3bg9_A
Probab=73.34 E-value=20 Score=37.69 Aligned_cols=149 Identities=16% Similarity=0.174 Sum_probs=88.7
Q ss_pred CCCchhHHHHHHHHHHC--CCcEEEEeeecCCC----CCCchHHHHHHHHHHHHhhCCCCceeeeecc---ccccccccc
Q 019890 156 PPDPDEPTNVAEAIASW--GLDYVVITSVDRDD----LADQGSGHFAQTVRKLKELKPNMLIEALVAK---SGLNVFAHN 226 (334)
Q Consensus 156 ~ld~~Ep~~~A~av~~~--GlkeVVLTSv~rdD----l~d~Ga~~fa~lIr~Ik~~~P~i~vE~Ll~~---ag~dv~~Hn 226 (334)
.++.++..++|+++.++ |+.+|-+.|+..-| ..... . .+.|++|++..|++.+..++.. -|...++-|
T Consensus 121 r~~~edkl~Ia~~Ld~~Gvg~~~IE~gGGatfd~~~~f~~e~--p-~e~l~~l~~~~~~~~l~~l~R~~n~vgy~~~p~~ 197 (718)
T 3bg3_A 121 RVRTHDLKKIAPYVAHNFSKLFSMENWGGATFDVAMRFLYEC--P-WRRLQELRELIPNIPFQMLLRGANAVGYTNYPDN 197 (718)
T ss_dssp CCCHHHHHHHHHHHHHHCTTCSEEEEEETTHHHHHHHTSCCC--H-HHHHHHHHHHCSSSCEEEEECGGGTTSSSCCCHH
T ss_pred CCCHHHHHHHHHHHHHhcCCCcEEEecCCcchhhccccCCCC--H-HHHHHHHHHHcccchHHHHhcccccccccccCCc
Confidence 47899999999999998 56668887543200 11001 1 2556777777788766555322 122222222
Q ss_pred h--hhHHHHHHh----hc--CCCCCHHHHHHHHHHHHHhCCCcceEeeceEEe---c-CC----CHHHHHHHHHHHHHcC
Q 019890 227 I--ETVEELQSA----VR--DHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLG---C-GE----TPDQVVSTMEKVRAAG 290 (334)
Q Consensus 227 l--ETv~~l~~~----Vr--~r~~tye~sL~vL~~ak~~~p~Gl~tkTgiMVG---l-GE----TdEE~~etl~~Lre~g 290 (334)
+ +.++..... +| +.....+.....++.+++. |..+.-.++.. + +. +.+.+.+.++.+.++|
T Consensus 198 ~~~~~i~~a~~~Gvd~irIf~s~n~l~~l~~~i~~ak~~---G~~v~~~i~~~~d~~dp~r~~~~~e~~~~~a~~l~~~G 274 (718)
T 3bg3_A 198 VVFKFCEVAKENGMDVFRVFDSLNYLPNMLLGMEAAGSA---GGVVEAAISYTGDVADPSRTKYSLQYYMGLAEELVRAG 274 (718)
T ss_dssp HHHHHHHHHHHHTCCEEEEECSSCCHHHHHHHHHHHHTT---TSEEEEEEECCSCTTCTTCCTTCHHHHHHHHHHHHHHT
T ss_pred chHHHHHHHHhcCcCEEEEEecHHHHHHHHHHHHHHHHc---CCeEEEEEEeeccccCCCCCCCCHHHHHHHHHHHHHcC
Confidence 1 122222221 11 1233466667778888875 66666666655 2 11 6788999999999999
Q ss_pred CcEEeeccCcCCCCCCCcccccCCHHHHHH
Q 019890 291 VDVMTFGQYMRPSKRHMPVSEYITPEAFER 320 (334)
Q Consensus 291 vd~vtigqYlrP~~~h~~v~~yv~P~~f~~ 320 (334)
++.|.|. - -..+.+|.++..
T Consensus 275 a~~I~l~----D------T~G~~~P~~v~~ 294 (718)
T 3bg3_A 275 THILCIK----D------MAGLLKPTACTM 294 (718)
T ss_dssp CSEEEEE----C------TTSCCCHHHHHH
T ss_pred CCEEEEc----C------cCCCcCHHHHHH
Confidence 9999875 1 124666766443
No 36
>2r91_A 2-keto-3-deoxy-(6-phospho-)gluconate aldolase; TIM barrel, thermophilic, lyase; 2.00A {Thermoproteus tenax} PDB: 2r94_A
Probab=72.72 E-value=25 Score=32.23 Aligned_cols=69 Identities=10% Similarity=0.185 Sum_probs=50.5
Q ss_pred CCHHHHHHHHHHHHHhCCCcceEeeceEEec-CCCHHHHHHHHHHHHHcCCcEEeec-cCc-C-CCCCCCcccccCCHHH
Q 019890 242 ANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC-GETPDQVVSTMEKVRAAGVDVMTFG-QYM-R-PSKRHMPVSEYITPEA 317 (334)
Q Consensus 242 ~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGl-GETdEE~~etl~~Lre~gvd~vtig-qYl-r-P~~~h~~v~~yv~P~~ 317 (334)
-+.+++.++++.+.+... | +|+|. +.+-+|.++..+..+++|+|-+-+- +|. + |+ ..+-
T Consensus 48 Ls~~Er~~v~~~~~~~~~-g------vi~Gvg~~~t~~ai~la~~A~~~Gadavlv~~P~y~~~~s----------~~~l 110 (286)
T 2r91_A 48 LSLQEKMELTDAATSAAR-R------VIVQVASLNADEAIALAKYAESRGAEAVASLPPYYFPRLS----------ERQI 110 (286)
T ss_dssp SCHHHHHHHHHHHHHHCS-S------EEEECCCSSHHHHHHHHHHHHHTTCSEEEECCSCSSTTCC----------HHHH
T ss_pred CCHHHHHHHHHHHHHHhC-C------EEEeeCCCCHHHHHHHHHHHHhcCCCEEEEcCCcCCCCCC----------HHHH
Confidence 467888999999988643 2 99999 5588999999999999999966553 232 2 21 1233
Q ss_pred HHHHHHHHHH
Q 019890 318 FERYRALGME 327 (334)
Q Consensus 318 f~~~~~~a~~ 327 (334)
+++|+.+|..
T Consensus 111 ~~~f~~va~a 120 (286)
T 2r91_A 111 AKYFRDLCSA 120 (286)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 7778888765
No 37
>1qop_A Tryptophan synthase alpha chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.1.2.4 PDB: 1k8x_A* 1wbj_A* 2clk_A* 2j9z_A* 3cep_A* 1k8y_A* 1a5s_A* 1a50_A* 1c29_A* 1c8v_A* 1c9d_A* 1bks_A* 1cx9_A* 1fuy_A* 1cw2_A* 1k7e_A* 1k7f_A* 1k7x_A* 1k3u_A* 1k8z_A* ...
Probab=71.69 E-value=15 Score=33.38 Aligned_cols=56 Identities=18% Similarity=0.286 Sum_probs=35.7
Q ss_pred CCchhHHHHHHHHHHCCCcEEEEeeecCCCCCCchH---------------HHHHHHHHHHHhhCCCCcee
Q 019890 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGS---------------GHFAQTVRKLKELKPNMLIE 212 (334)
Q Consensus 157 ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga---------------~~fa~lIr~Ik~~~P~i~vE 212 (334)
.+.++..+.++++.+.|++.|-|----.|.+-|+.. ....++|++|++..+++.+-
T Consensus 28 p~~~~~~~~~~~l~~~GaD~ieig~P~sdp~~DG~~i~~a~~~al~~G~~~~~~~~~v~~ir~~~~~~Pv~ 98 (268)
T 1qop_A 28 PGIEQSLKIIDTLIDAGADALELGVPFSDPLADGPTIQNANLRAFAAGVTPAQCFEMLAIIREKHPTIPIG 98 (268)
T ss_dssp SCHHHHHHHHHHHHHTTCSSEEEECCCSCCTTCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSSSCEE
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCCCCccCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEE
Confidence 455788999999999999988773322333344321 12347889998874444443
No 38
>1vhc_A Putative KHG/KDPG aldolase; structural genomics, unknown function; HET: MSE; 1.89A {Haemophilus influenzae} SCOP: c.1.10.1
Probab=71.04 E-value=47 Score=29.58 Aligned_cols=103 Identities=23% Similarity=0.332 Sum_probs=65.8
Q ss_pred CCchhHHHHHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhCCCCceee---e-------eccccccccccc
Q 019890 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEA---L-------VAKSGLNVFAHN 226 (334)
Q Consensus 157 ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~P~i~vE~---L-------l~~ag~dv~~Hn 226 (334)
.++++..++++++.+.|++-|-|+--+ ++ -.+.|+++++..|++.+.. + ..++|.|.+
T Consensus 26 ~~~~~~~~~~~al~~gGv~~iel~~k~----~~-----~~~~i~~l~~~~~~l~vgaGtvl~~d~~~~A~~aGAd~v--- 93 (224)
T 1vhc_A 26 DNADDILPLADTLAKNGLSVAEITFRS----EA-----AADAIRLLRANRPDFLIAAGTVLTAEQVVLAKSSGADFV--- 93 (224)
T ss_dssp SSGGGHHHHHHHHHHTTCCEEEEETTS----TT-----HHHHHHHHHHHCTTCEEEEESCCSHHHHHHHHHHTCSEE---
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeccC----ch-----HHHHHHHHHHhCcCcEEeeCcEeeHHHHHHHHHCCCCEE---
Confidence 578899999999999999988887321 11 2467888888888754321 1 233444433
Q ss_pred hhhHHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCcceEeeceEEecCCCHHHHHHHHHHHHHcCCcEEeecc
Q 019890 227 IETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQ 298 (334)
Q Consensus 227 lETv~~l~~~Vr~r~~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGlGETdEE~~etl~~Lre~gvd~vtigq 298 (334)
..+..+ .++++.+++. |. .+|+| -.|.+|+.+. .+.|+|+|.+|+
T Consensus 94 -----------~~p~~d----~~v~~~ar~~---g~----~~i~G-v~t~~e~~~A----~~~Gad~vk~Fp 138 (224)
T 1vhc_A 94 -----------VTPGLN----PKIVKLCQDL---NF----PITPG-VNNPMAIEIA----LEMGISAVKFFP 138 (224)
T ss_dssp -----------ECSSCC----HHHHHHHHHT---TC----CEECE-ECSHHHHHHH----HHTTCCEEEETT
T ss_pred -----------EECCCC----HHHHHHHHHh---CC----CEEec-cCCHHHHHHH----HHCCCCEEEEee
Confidence 112222 5667777774 22 34557 4577776553 478999999975
No 39
>1mxs_A KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate aldolase, sulfate, beta-BA lyase; 2.20A {Pseudomonas putida} SCOP: c.1.10.1
Probab=70.49 E-value=40 Score=30.04 Aligned_cols=103 Identities=20% Similarity=0.305 Sum_probs=63.9
Q ss_pred CCchhHHHHHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhCCCCceee---e-------eccccccccccc
Q 019890 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEA---L-------VAKSGLNVFAHN 226 (334)
Q Consensus 157 ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~P~i~vE~---L-------l~~ag~dv~~Hn 226 (334)
.+.++..+.++++.+.|++-|-|+--+ + .-.+.|+++++.+|++.+.. + ..++|.|.+.
T Consensus 35 ~~~~~~~~~~~al~~gGv~~iel~~k~----~-----~~~~~i~~l~~~~~~~~igagtvl~~d~~~~A~~aGAd~v~-- 103 (225)
T 1mxs_A 35 AREEDILPLADALAAGGIRTLEVTLRS----Q-----HGLKAIQVLREQRPELCVGAGTVLDRSMFAAVEAAGAQFVV-- 103 (225)
T ss_dssp SCGGGHHHHHHHHHHTTCCEEEEESSS----T-----HHHHHHHHHHHHCTTSEEEEECCCSHHHHHHHHHHTCSSEE--
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEecCC----c-----cHHHHHHHHHHhCcccEEeeCeEeeHHHHHHHHHCCCCEEE--
Confidence 478899999999999999998887321 1 12467888888888754321 1 2334444331
Q ss_pred hhhHHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCcceEeeceEEecCCCHHHHHHHHHHHHHcCCcEEeecc
Q 019890 227 IETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQ 298 (334)
Q Consensus 227 lETv~~l~~~Vr~r~~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGlGETdEE~~etl~~Lre~gvd~vtigq 298 (334)
.+.. ..++++.+++. | ..+|.| -.|.+|+.+.+ +.|+|+|.+|+
T Consensus 104 ------------~p~~----d~~v~~~~~~~---g----~~~i~G-~~t~~e~~~A~----~~Gad~vk~FP 147 (225)
T 1mxs_A 104 ------------TPGI----TEDILEAGVDS---E----IPLLPG-ISTPSEIMMGY----ALGYRRFKLFP 147 (225)
T ss_dssp ------------CSSC----CHHHHHHHHHC---S----SCEECE-ECSHHHHHHHH----TTTCCEEEETT
T ss_pred ------------eCCC----CHHHHHHHHHh---C----CCEEEe-eCCHHHHHHHH----HCCCCEEEEcc
Confidence 1111 24566666654 3 245567 46677765543 67889888864
No 40
>2yci_X 5-methyltetrahydrofolate corrinoid/iron sulfur PR methyltransferase; 1.78A {Carboxydothermus hydrogenoformans} PDB: 2ycj_A* 2yck_X*
Probab=70.32 E-value=59 Score=29.88 Aligned_cols=128 Identities=13% Similarity=0.178 Sum_probs=77.8
Q ss_pred CCCchhHHHHHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhCCCC--ceeee-------eccc--cccccc
Q 019890 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNM--LIEAL-------VAKS--GLNVFA 224 (334)
Q Consensus 156 ~ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~P~i--~vE~L-------l~~a--g~dv~~ 224 (334)
..+.+++.+.|+...+.|.+.|-|=+... .+.+.+.+..+|++|++.. ++ +|.-. ..++ |.+++|
T Consensus 30 ~~~~~~a~~~a~~~v~~GAdiIDIg~~s~---~~eE~~rv~~vi~~l~~~~-~~pisIDT~~~~v~~aal~a~~Ga~iIN 105 (271)
T 2yci_X 30 NKDPRPIQEWARRQAEKGAHYLDVNTGPT---ADDPVRVMEWLVKTIQEVV-DLPCCLDSTNPDAIEAGLKVHRGHAMIN 105 (271)
T ss_dssp TTCCHHHHHHHHHHHHTTCSEEEEECCSC---SSCHHHHHHHHHHHHHHHC-CCCEEEECSCHHHHHHHHHHCCSCCEEE
T ss_pred hCCHHHHHHHHHHHHHCCCCEEEEcCCcC---chhHHHHHHHHHHHHHHhC-CCeEEEeCCCHHHHHHHHHhCCCCCEEE
Confidence 35789999999999999999988865441 2335778899999998763 33 33222 2334 777766
Q ss_pred c-chhh--HHHHHHhhcC---------C-----CCCHHHHH----HHHHHHHHhCCCcce---EeeceEEec-CCCHHHH
Q 019890 225 H-NIET--VEELQSAVRD---------H-----RANFKQSL----DVLMMAKDYVPAGTL---TKTSIMLGC-GETPDQV 279 (334)
Q Consensus 225 H-nlET--v~~l~~~Vr~---------r-----~~tye~sL----~vL~~ak~~~p~Gl~---tkTgiMVGl-GETdEE~ 279 (334)
- +.+. .+.+.+-+.. . ..+.++.+ +.++.+.+. |+. +--+-.+|| |-+.++-
T Consensus 106 dvs~~~d~~~~~~~~~a~~~~~vv~m~~d~~G~p~t~~~~~~~l~~~~~~a~~~---Gi~~~~IilDPg~gfigk~~~~~ 182 (271)
T 2yci_X 106 STSADQWKMDIFFPMAKKYEAAIIGLTMNEKGVPKDANDRSQLAMELVANADAH---GIPMTELYIDPLILPVNVAQEHA 182 (271)
T ss_dssp EECSCHHHHHHHHHHHHHHTCEEEEESCBTTBCCCSHHHHHHHHHHHHHHHHHT---TCCGGGEEEECCCCCTTTSTHHH
T ss_pred ECCCCccccHHHHHHHHHcCCCEEEEecCCCCCCCCHHHHHHHHHHHHHHHHHC---CCCcccEEEecCCCccccCHHHH
Confidence 2 3222 1344433221 1 13444444 444455553 553 555666788 8888877
Q ss_pred HHHHHHHHHcC
Q 019890 280 VSTMEKVRAAG 290 (334)
Q Consensus 280 ~etl~~Lre~g 290 (334)
.++|+.++.+.
T Consensus 183 ~~~l~~l~~~~ 193 (271)
T 2yci_X 183 VEVLETIRQIK 193 (271)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHH
Confidence 77777666653
No 41
>3d0c_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI-2, structural genomics; 1.90A {Oceanobacillus iheyensis HTE831}
Probab=69.72 E-value=21 Score=33.40 Aligned_cols=72 Identities=15% Similarity=0.222 Sum_probs=52.1
Q ss_pred CCHHHHHHHHHHHHHhCCCcceEeeceEEecCCCHHHHHHHHHHHHHcCCcEEeec-cC-cCCCCCCCcccccCCHHHHH
Q 019890 242 ANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFG-QY-MRPSKRHMPVSEYITPEAFE 319 (334)
Q Consensus 242 ~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGlGETdEE~~etl~~Lre~gvd~vtig-qY-lrP~~~h~~v~~yv~P~~f~ 319 (334)
-+.+++.++++.+.+...+ +.-+|+|.|.+-+|.++..+..+++|+|-+-+- +| .+|+. .+-++
T Consensus 62 Ls~eEr~~vi~~~~~~~~g----rvpViaGvg~st~~ai~la~~A~~~Gadavlv~~P~y~~~s~----------~~l~~ 127 (314)
T 3d0c_A 62 LTIEEAKQVATRVTELVNG----RATVVAGIGYSVDTAIELGKSAIDSGADCVMIHQPVHPYITD----------AGAVE 127 (314)
T ss_dssp SCHHHHHHHHHHHHHHHTT----SSEEEEEECSSHHHHHHHHHHHHHTTCSEEEECCCCCSCCCH----------HHHHH
T ss_pred CCHHHHHHHHHHHHHHhCC----CCeEEecCCcCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCH----------HHHHH
Confidence 4678889999988876433 356899995588999999999999999976553 33 33321 23367
Q ss_pred HHHHHHHH
Q 019890 320 RYRALGME 327 (334)
Q Consensus 320 ~~~~~a~~ 327 (334)
+|+.+|..
T Consensus 128 ~f~~va~a 135 (314)
T 3d0c_A 128 YYRNIIEA 135 (314)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 77777765
No 42
>1eye_A DHPS 1, dihydropteroate synthase I; alpha-beta barrel, transferase; HET: PMM; 1.70A {Mycobacterium tuberculosis H37RV} SCOP: c.1.21.1
Probab=69.65 E-value=36 Score=31.56 Aligned_cols=130 Identities=13% Similarity=0.082 Sum_probs=72.3
Q ss_pred CCCCchhHHHHHHHHHHCCCcEEEEeeec-CCCC----CCchHHHHHHHHHHHHhhCCCC--ceeee-------eccccc
Q 019890 155 PPPDPDEPTNVAEAIASWGLDYVVITSVD-RDDL----ADQGSGHFAQTVRKLKELKPNM--LIEAL-------VAKSGL 220 (334)
Q Consensus 155 ~~ld~~Ep~~~A~av~~~GlkeVVLTSv~-rdDl----~d~Ga~~fa~lIr~Ik~~~P~i--~vE~L-------l~~ag~ 220 (334)
...+++++.+.|+...+.|.+.|-|=+.. |... .+.....+..+|++|++. ++ +|... -.++|.
T Consensus 24 ~~~~~~~a~~~a~~~v~~GAdiIDIGgestrpga~~v~~~eE~~Rv~pvi~~l~~~--~~piSIDT~~~~va~aAl~aGa 101 (280)
T 1eye_A 24 CYLDLDDAVKHGLAMAAAGAGIVDVGGESSRPGATRVDPAVETSRVIPVVKELAAQ--GITVSIDTMRADVARAALQNGA 101 (280)
T ss_dssp CCCSHHHHHHHHHHHHHTTCSEEEEECC--------------HHHHHHHHHHHHHT--TCCEEEECSCHHHHHHHHHTTC
T ss_pred ccCCHHHHHHHHHHHHHCCCCEEEECCccCCCCCCCCCHHHHHHHHHHHHHHhhcC--CCEEEEeCCCHHHHHHHHHcCC
Confidence 35789999999999999999998886522 2110 122345677777777653 33 33333 334576
Q ss_pred cccccch-hh-HHHHHHhh----------cCC--------C-CC--------HHHHHHHHHHHHHhCCCcce---Eeece
Q 019890 221 NVFAHNI-ET-VEELQSAV----------RDH--------R-AN--------FKQSLDVLMMAKDYVPAGTL---TKTSI 268 (334)
Q Consensus 221 dv~~Hnl-ET-v~~l~~~V----------r~r--------~-~t--------ye~sL~vL~~ak~~~p~Gl~---tkTgi 268 (334)
+++|+-- +. -+.+.+-+ +-+ . .. .+...+.++.+.+. |+. +--+-
T Consensus 102 ~iINdvsg~~~d~~m~~~~a~~~~~vVlmh~~G~p~tm~~~~~~y~dv~~~v~~~l~~~i~~a~~~---Gi~~~~IilDP 178 (280)
T 1eye_A 102 QMVNDVSGGRADPAMGPLLAEADVPWVLMHWRAVSADTPHVPVRYGNVVAEVRADLLASVADAVAA---GVDPARLVLDP 178 (280)
T ss_dssp CEEEETTTTSSCTTHHHHHHHHTCCEEEECCCCSCTTCTTSCCCCSSHHHHHHHHHHHHHHHHHHT---TCCGGGEEEEC
T ss_pred CEEEECCCCCCCHHHHHHHHHhCCeEEEEcCCCCCcchhhcCcchhHHHHHHHHHHHHHHHHHHHc---CCChhhEEEEC
Confidence 7666521 00 11111111 100 0 11 33344666666664 543 33343
Q ss_pred EEecCCCHHHHHHHHHHHHHc
Q 019890 269 MLGCGETPDQVVSTMEKVRAA 289 (334)
Q Consensus 269 MVGlGETdEE~~etl~~Lre~ 289 (334)
-+|||.|.++=.++|+.|+++
T Consensus 179 g~Gf~k~~~~n~~ll~~l~~~ 199 (280)
T 1eye_A 179 GLGFAKTAQHNWAILHALPEL 199 (280)
T ss_dssp CTTSSCCHHHHHHHHHTHHHH
T ss_pred CCCcccCHHHHHHHHHHHHHh
Confidence 468999999888888877765
No 43
>1zlp_A PSR132, petal death protein; TIM-barrel, helix swapping,2-ethyl-3-methylmalate lyase, 2-P methylmalate lyase, lyase/PEP mutase superfamily; 2.70A {Dianthus caryophyllus}
Probab=69.03 E-value=31 Score=32.80 Aligned_cols=77 Identities=14% Similarity=0.092 Sum_probs=64.6
Q ss_pred CCCHHHHHHHHHHHHHhCCCcceEeeceEEecCCCHHHHHHHHHHHHHcCCcEEee-ccCcCCCCCCCcccccCCHHHHH
Q 019890 241 RANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTF-GQYMRPSKRHMPVSEYITPEAFE 319 (334)
Q Consensus 241 ~~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGlGETdEE~~etl~~Lre~gvd~vti-gqYlrP~~~h~~v~~yv~P~~f~ 319 (334)
..++++.+..++.+.+..++ +.+-.|+=.||| +.+++.++.+.|.+.|+.-|+| +|-..|..-|+.=...++.+++.
T Consensus 82 ~vt~~em~~~~~~I~r~~~~-~PviaD~d~Gyg-~~~~v~~tv~~l~~aGaagv~iED~~~~k~cgH~~gk~L~p~~e~~ 159 (318)
T 1zlp_A 82 LLTTTEVVEATRRITAAAPN-LCVVVDGDTGGG-GPLNVQRFIRELISAGAKGVFLEDQVWPKKCGHMRGKAVVPAEEHA 159 (318)
T ss_dssp CSCHHHHHHHHHHHHHHSSS-SEEEEECTTCSS-SHHHHHHHHHHHHHTTCCEEEEECBCSSCCCSSSSCCCBCCHHHHH
T ss_pred CCCHHHHHHHHHHHHhhccC-CCEEEeCCCCCC-CHHHHHHHHHHHHHcCCcEEEECCCCCCccccCCCCCccCCHHHHH
Confidence 46899999999999888766 788899999999 8999999999999999999998 44445566788877788887764
No 44
>3na8_A Putative dihydrodipicolinate synthetase; lyase; HET: MSE; 1.85A {Pseudomonas aeruginosa}
Probab=68.53 E-value=23 Score=33.14 Aligned_cols=52 Identities=10% Similarity=0.075 Sum_probs=40.7
Q ss_pred CCHHHHHHHHHHHHHhCCCcceEeeceEEecC-CCHHHHHHHHHHHHHcCCcEEeec
Q 019890 242 ANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCG-ETPDQVVSTMEKVRAAGVDVMTFG 297 (334)
Q Consensus 242 ~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGlG-ETdEE~~etl~~Lre~gvd~vtig 297 (334)
-+.+++.++++.+.+...+ +.-+|+|.| .+-+|.++..+..+++|+|-+-+-
T Consensus 74 Ls~~Er~~v~~~~v~~~~g----rvpViaGvg~~~t~~ai~la~~A~~~Gadavlv~ 126 (315)
T 3na8_A 74 LSDPEWDEVVDFTLKTVAH----RVPTIVSVSDLTTAKTVRRAQFAESLGAEAVMVL 126 (315)
T ss_dssp SCHHHHHHHHHHHHHHHTT----SSCBEEECCCSSHHHHHHHHHHHHHTTCSEEEEC
T ss_pred CCHHHHHHHHHHHHHHhCC----CCcEEEecCCCCHHHHHHHHHHHHhcCCCEEEEC
Confidence 4577888888888876433 456899994 788999999999999999976654
No 45
>3hq1_A 2-isopropylmalate synthase; LEUA, mycobacterium tuberculosis inhibition, bromopyruvate, amino-acid biosynthesis; HET: FLC; 1.70A {Mycobacterium tuberculosis} PDB: 1sr9_A 3hpz_A 3hps_A* 3fig_A 3u6w_A 3hpx_A
Probab=67.94 E-value=26 Score=36.48 Aligned_cols=145 Identities=14% Similarity=0.172 Sum_probs=84.5
Q ss_pred CCCCchhHHHHHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhC---CCCceeee--------------ecc
Q 019890 155 PPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELK---PNMLIEAL--------------VAK 217 (334)
Q Consensus 155 ~~ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~---P~i~vE~L--------------l~~ 217 (334)
.+++.+|-.++|+.+.++|+++|=..+ |......+ +.|++|.+.. ++..+-+| +..
T Consensus 88 ~~~s~eeKl~Ia~~L~~lGVd~IEaGf------P~asp~D~-e~v~~i~~~~l~~~~~~i~aL~r~~~~did~a~eal~~ 160 (644)
T 3hq1_A 88 DPMSPARKRRMFDLLVRMGYKEIEVGF------PSASQTDF-DFVREIIEQGAIPDDVTIQVLTQCRPELIERTFQACSG 160 (644)
T ss_dssp SCCCHHHHHHHHHHHHHHTCSEEEEEC------TTTCHHHH-HHHHHHHHTTCSCTTCEEEEEEESCHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEeC------CCCChhHH-HHHHHHHhcCCCCCCeEEEEEecCCHhhHHHHHHHHhc
Confidence 368999999999999999999988755 22222233 3566665542 35656555 234
Q ss_pred ccccccccchhhHHHHHHhhcCCCCCHHHHHHHHH----HHHHhCCCcceEeeceEEec-CC-----CHHHHHHHHHHHH
Q 019890 218 SGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLM----MAKDYVPAGTLTKTSIMLGC-GE-----TPDQVVSTMEKVR 287 (334)
Q Consensus 218 ag~dv~~HnlETv~~l~~~Vr~r~~tye~sL~vL~----~ak~~~p~Gl~tkTgiMVGl-GE-----TdEE~~etl~~Lr 287 (334)
++.+.++-.+-|++-..... -+.+.++.|+.+. .+++...+ .+.+++-+=| +| ..+-+.+.++.+.
T Consensus 161 a~~~~Vhif~stSd~h~~~~--l~~s~eevle~~~~~v~~a~~~~~~--~~~~~~~v~fs~Edasrtd~dfl~ev~~aa~ 236 (644)
T 3hq1_A 161 APRAIVHFYNSTSILQRRVV--FRANRAEVQAIATDGARKCVEQAAK--YPGTQWRFEYSPESYTGTELEYAKQVCDAVG 236 (644)
T ss_dssp CSEEEEEEEEECCHHHHHHT--TCCCHHHHHHHHHHHHHHHHHHHHH--SCSSEEEEEEEEETGGGSCHHHHHHHHHHHH
T ss_pred CCCCEEEEEecCCHHHHHHH--hCCCHHHHHHHHHHHHHHHHHHhhh--ccCceEEEEEcCcccCCCCHHHHHHHHHHHH
Confidence 56666655555554433332 2467888877554 34443111 1223444445 55 4455668888888
Q ss_pred Hc---CCc---EEeeccCcCCCCCCCcccccCCHHHHHH
Q 019890 288 AA---GVD---VMTFGQYMRPSKRHMPVSEYITPEAFER 320 (334)
Q Consensus 288 e~---gvd---~vtigqYlrP~~~h~~v~~yv~P~~f~~ 320 (334)
++ |+| .+.+. - -..+.+|.++..
T Consensus 237 eaG~~Gad~~~~I~Lp----D------TvG~~tP~~~~~ 265 (644)
T 3hq1_A 237 EVIAPTPERPIIFNLP----A------TVEMTTPNVYAD 265 (644)
T ss_dssp HHHCCCSSSCEEEEEE----E------SSCCSCHHHHHH
T ss_pred HhcCCCCCceeEEEec----C------CCcccCHHHHHH
Confidence 86 566 44432 1 135778876543
No 46
>3flu_A DHDPS, dihydrodipicolinate synthase; TIM barrel, beta-alpha-barrel, amino-acid biosynthesis, diaminopimelate biosynthesis; 2.00A {Neisseria meningitidis serogroup B} SCOP: c.1.10.0
Probab=67.75 E-value=26 Score=32.34 Aligned_cols=72 Identities=14% Similarity=0.312 Sum_probs=50.8
Q ss_pred CCHHHHHHHHHHHHHhCCCcceEeeceEEecC-CCHHHHHHHHHHHHHcCCcEEeec-cC-cCCCCCCCcccccCCHHHH
Q 019890 242 ANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCG-ETPDQVVSTMEKVRAAGVDVMTFG-QY-MRPSKRHMPVSEYITPEAF 318 (334)
Q Consensus 242 ~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGlG-ETdEE~~etl~~Lre~gvd~vtig-qY-lrP~~~h~~v~~yv~P~~f 318 (334)
-+.+++.++++.+.+...+ +.-+|+|.| .+-+|.++..+..+++|+|-+-+- +| .+|+. .+-+
T Consensus 57 Ls~~Er~~v~~~~~~~~~g----rvpviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~~~----------~~l~ 122 (297)
T 3flu_A 57 LSVEEHTAVIEAVVKHVAK----RVPVIAGTGANNTVEAIALSQAAEKAGADYTLSVVPYYNKPSQ----------EGIY 122 (297)
T ss_dssp SCHHHHHHHHHHHHHHHTT----SSCEEEECCCSSHHHHHHHHHHHHHTTCSEEEEECCCSSCCCH----------HHHH
T ss_pred CCHHHHHHHHHHHHHHhCC----CCcEEEeCCCcCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCH----------HHHH
Confidence 4577888888888876433 456899994 689999999999999999976554 33 33321 2336
Q ss_pred HHHHHHHHH
Q 019890 319 ERYRALGME 327 (334)
Q Consensus 319 ~~~~~~a~~ 327 (334)
++|+.+|..
T Consensus 123 ~~f~~va~a 131 (297)
T 3flu_A 123 QHFKTIAEA 131 (297)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 667777664
No 47
>2nuw_A 2-keto-3-deoxygluconate/2-keto-3-deoxy-6-phospho aldolase; TIM barrel, lyase; 1.80A {Sulfolobus acidocaldarius dsm 639} PDB: 2nux_A 2nuy_A
Probab=67.69 E-value=27 Score=32.09 Aligned_cols=69 Identities=7% Similarity=-0.000 Sum_probs=49.8
Q ss_pred CCHHHHHHHHHHHHHhCCCcceEeeceEEec-CCCHHHHHHHHHHHHHcCCcEEeec-cCc-C-CCCCCCcccccCCHHH
Q 019890 242 ANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC-GETPDQVVSTMEKVRAAGVDVMTFG-QYM-R-PSKRHMPVSEYITPEA 317 (334)
Q Consensus 242 ~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGl-GETdEE~~etl~~Lre~gvd~vtig-qYl-r-P~~~h~~v~~yv~P~~ 317 (334)
-+.+++.++++.+.+... | +|+|. +.+-+|.++..+..+++|+|-+-+- +|. + |+ ..+-
T Consensus 49 Ls~eEr~~v~~~~~~~~~-g------ViaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~y~~~~s----------~~~l 111 (288)
T 2nuw_A 49 LSKDEKRQNLNALYDVTH-K------LIFQVGSLNLNDVMELVKFSNEMDILGVSSHSPYYFPRLP----------EKFL 111 (288)
T ss_dssp SCHHHHHHHHHHHTTTCS-C------EEEECCCSCHHHHHHHHHHHHTSCCSEEEECCCCSSCSCC----------HHHH
T ss_pred CCHHHHHHHHHHHHHHhC-C------eEEeeCCCCHHHHHHHHHHHHhcCCCEEEEcCCcCCCCCC----------HHHH
Confidence 457788899998887532 2 99999 4588999999999999999976553 332 2 21 1233
Q ss_pred HHHHHHHHHH
Q 019890 318 FERYRALGME 327 (334)
Q Consensus 318 f~~~~~~a~~ 327 (334)
+++|+.+|..
T Consensus 112 ~~~f~~va~a 121 (288)
T 2nuw_A 112 AKYYEEIARI 121 (288)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 7788888875
No 48
>1w3i_A EDA, 2-keto-3-deoxy gluconate aldolase; archaeal metabolism, pyruvate; 1.7A {Sulfolobus solfataricus} SCOP: c.1.10.1 PDB: 1w37_A 1w3n_A* 1w3t_A* 2yda_A*
Probab=66.93 E-value=27 Score=32.19 Aligned_cols=69 Identities=13% Similarity=0.115 Sum_probs=50.0
Q ss_pred CCHHHHHHHHHHHHHhCCCcceEeeceEEec-CCCHHHHHHHHHHHHHcCCcEEeec-cCc-C-CCCCCCcccccCCHHH
Q 019890 242 ANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC-GETPDQVVSTMEKVRAAGVDVMTFG-QYM-R-PSKRHMPVSEYITPEA 317 (334)
Q Consensus 242 ~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGl-GETdEE~~etl~~Lre~gvd~vtig-qYl-r-P~~~h~~v~~yv~P~~ 317 (334)
-+.+++.++++.+.+... | +|+|. +.+-+|.++..+..+++|+|-+-+. +|. + |+ ..+-
T Consensus 49 Ls~eEr~~v~~~~~~~~~-g------viaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~y~~~~s----------~~~l 111 (293)
T 1w3i_A 49 LSPEEKLENLKAVYDVTN-K------IIFQVGGLNLDDAIRLAKLSKDFDIVGIASYAPYYYPRMS----------EKHL 111 (293)
T ss_dssp SCHHHHHHHHHHHHTTCS-C------EEEECCCSCHHHHHHHHHHGGGSCCSEEEEECCCSCSSCC----------HHHH
T ss_pred CCHHHHHHHHHHHHHHcC-C------EEEecCCCCHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCC----------HHHH
Confidence 467888999999887532 2 99999 5588999999999999999966553 332 2 21 1233
Q ss_pred HHHHHHHHHH
Q 019890 318 FERYRALGME 327 (334)
Q Consensus 318 f~~~~~~a~~ 327 (334)
+++|+.+|..
T Consensus 112 ~~~f~~va~a 121 (293)
T 1w3i_A 112 VKYFKTLCEV 121 (293)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhh
Confidence 7778888765
No 49
>1h7n_A 5-aminolaevulinic acid dehydratase; lyase, aldolase, TIM barrel, tetrapyrrole synthesis; HET: SHF; 1.6A {Saccharomyces cerevisiae} SCOP: c.1.10.3 PDB: 1h7p_A* 1h7r_A* 1ohl_A* 1qml_A 1qnv_A 1w31_A* 1h7o_A* 1eb3_A* 1gjp_A* 1ylv_A* 1aw5_A
Probab=66.76 E-value=8.9 Score=36.95 Aligned_cols=121 Identities=17% Similarity=0.236 Sum_probs=72.2
Q ss_pred CCCCchhHHHHHHHHHHCCCcEEEEeeec-----CCCCCCch---HHHHHHHHHHHHhhCCCCcee--e-e---------
Q 019890 155 PPPDPDEPTNVAEAIASWGLDYVVITSVD-----RDDLADQG---SGHFAQTVRKLKELKPNMLIE--A-L--------- 214 (334)
Q Consensus 155 ~~ld~~Ep~~~A~av~~~GlkeVVLTSv~-----rdDl~d~G---a~~fa~lIr~Ik~~~P~i~vE--~-L--------- 214 (334)
...+.+.+.++++.+.++|++-|.|=|+- .|...... -.-+.+.|++||+.+|++.|= + |
T Consensus 64 ~r~sid~l~~~~~~~~~lGi~~v~LFgv~~~~~~KD~~gs~A~~~~g~v~rair~iK~~~pdl~VitDvcLc~YT~HGHc 143 (342)
T 1h7n_A 64 NRIGVNRLKDYLKPLVAKGLRSVILFGVPLIPGTKDPVGTAADDPAGPVIQGIKFIREYFPELYIICDVCLCEYTSHGHC 143 (342)
T ss_dssp EEECHHHHHHHHHHHHHTTCCEEEEEEECCSTTCCBTTCGGGGCTTSHHHHHHHHHHHHCTTSEEEEEECSTTTBTTCCS
T ss_pred eeeCHHHHHHHHHHHHHCCCCEEEEecccCccCCCCccccccCCCCChHHHHHHHHHHHCCCeEEEEeeecccccCCCce
Confidence 35689999999999999999999999983 22111110 125678999999999986441 1 1
Q ss_pred -ec-cccccccccchhhHHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCcceEeeceEEecCCCHHHHHHHHHHHHHcCC-
Q 019890 215 -VA-KSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGV- 291 (334)
Q Consensus 215 -l~-~ag~dv~~HnlETv~~l~~~Vr~r~~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGlGETdEE~~etl~~Lre~gv- 291 (334)
+. +.| .-.|-+|++.|-+. -|.+|+. --+ ++--|++|=|- +...=+-|.+.|+
T Consensus 144 Gil~~~g---~V~ND~Tl~~Lak~-------------Als~A~A-GAd-iVAPSdMMDGr------V~aIR~aLd~~G~~ 199 (342)
T 1h7n_A 144 GVLYDDG---TINRERSVSRLAAV-------------AVNYAKA-GAH-CVAPSDMIDGR------IRDIKRGLINANLA 199 (342)
T ss_dssp SCBCTTS---SBCHHHHHHHHHHH-------------HHHHHHH-TCS-EEEECCCCTTH------HHHHHHHHHHTTCT
T ss_pred eEECCCC---cCccHHHHHHHHHH-------------HHHHHHc-CCC-eeecccccccH------HHHHHHHHHHCCCc
Confidence 22 111 12245555555322 1223433 122 55567777653 3344445777787
Q ss_pred cEEeeccC
Q 019890 292 DVMTFGQY 299 (334)
Q Consensus 292 d~vtigqY 299 (334)
..+.|-.|
T Consensus 200 ~~v~ImsY 207 (342)
T 1h7n_A 200 HKTFVLSY 207 (342)
T ss_dssp TTCEEEEE
T ss_pred cCceEeec
Confidence 66666555
No 50
>3tak_A DHDPS, dihydrodipicolinate synthase; TIM barrel, lysine biosynthesis, pyruvate, lyase; 1.42A {Acinetobacter baumannii} PDB: 3pud_A* 3pue_A* 3pul_A 3rk8_A 3tce_A* 3tdf_A 3u8g_A 3uqn_A 4dxv_A
Probab=66.71 E-value=25 Score=32.31 Aligned_cols=72 Identities=14% Similarity=0.348 Sum_probs=50.5
Q ss_pred CCHHHHHHHHHHHHHhCCCcceEeeceEEecC-CCHHHHHHHHHHHHHcCCcEEeec-cC-cCCCCCCCcccccCCHHHH
Q 019890 242 ANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCG-ETPDQVVSTMEKVRAAGVDVMTFG-QY-MRPSKRHMPVSEYITPEAF 318 (334)
Q Consensus 242 ~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGlG-ETdEE~~etl~~Lre~gvd~vtig-qY-lrP~~~h~~v~~yv~P~~f 318 (334)
-+.+++.++++.+.+...+ +.-+|+|.| .+-+|.++..+..+++|+|-+-+- +| .+|+. .+-+
T Consensus 51 Ls~~Er~~v~~~~~~~~~g----r~pviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~~~----------~~l~ 116 (291)
T 3tak_A 51 LSMEEHTQVIKEIIRVANK----RIPIIAGTGANSTREAIELTKAAKDLGADAALLVTPYYNKPTQ----------EGLY 116 (291)
T ss_dssp SCHHHHHHHHHHHHHHHTT----SSCEEEECCCSSHHHHHHHHHHHHHHTCSEEEEECCCSSCCCH----------HHHH
T ss_pred CCHHHHHHHHHHHHHHhCC----CCeEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCH----------HHHH
Confidence 3578888888888876443 456899994 689999999999999999976554 23 33321 2336
Q ss_pred HHHHHHHHH
Q 019890 319 ERYRALGME 327 (334)
Q Consensus 319 ~~~~~~a~~ 327 (334)
++|+.+|..
T Consensus 117 ~~f~~ia~a 125 (291)
T 3tak_A 117 QHYKAIAEA 125 (291)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 666666654
No 51
>3qze_A DHDPS, dihydrodipicolinate synthase; alpha beta barrel, cytoplasmic; 1.59A {Pseudomonas aeruginosa} PDB: 3puo_A* 3noe_A 3ps7_A* 3s8h_A
Probab=66.33 E-value=29 Score=32.50 Aligned_cols=72 Identities=17% Similarity=0.423 Sum_probs=50.3
Q ss_pred CCHHHHHHHHHHHHHhCCCcceEeeceEEecC-CCHHHHHHHHHHHHHcCCcEEeec-c-CcCCCCCCCcccccCCHHHH
Q 019890 242 ANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCG-ETPDQVVSTMEKVRAAGVDVMTFG-Q-YMRPSKRHMPVSEYITPEAF 318 (334)
Q Consensus 242 ~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGlG-ETdEE~~etl~~Lre~gvd~vtig-q-YlrP~~~h~~v~~yv~P~~f 318 (334)
-+.+++.++++.+.+...+ +.-+|+|.| .+-+|.++..+..+++|+|-+-+- + |.+|+. .+-+
T Consensus 73 Ls~~Er~~v~~~~v~~~~g----rvpViaGvg~~st~eai~la~~A~~~Gadavlv~~P~y~~~s~----------~~l~ 138 (314)
T 3qze_A 73 LDVEEHIQVIRRVVDQVKG----RIPVIAGTGANSTREAVALTEAAKSGGADACLLVTPYYNKPTQ----------EGMY 138 (314)
T ss_dssp CCHHHHHHHHHHHHHHHTT----SSCEEEECCCSSHHHHHHHHHHHHHTTCSEEEEECCCSSCCCH----------HHHH
T ss_pred CCHHHHHHHHHHHHHHhCC----CCcEEEeCCCcCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCH----------HHHH
Confidence 4577888888888776433 456899994 688999999999999999976554 2 334431 1235
Q ss_pred HHHHHHHHH
Q 019890 319 ERYRALGME 327 (334)
Q Consensus 319 ~~~~~~a~~ 327 (334)
++|+.+|..
T Consensus 139 ~~f~~va~a 147 (314)
T 3qze_A 139 QHFRHIAEA 147 (314)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 666666654
No 52
>1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum aerophilum} SCOP: c.1.2.1
Probab=66.23 E-value=47 Score=28.52 Aligned_cols=46 Identities=20% Similarity=0.378 Sum_probs=33.1
Q ss_pred CchhHHHHHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhC
Q 019890 158 DPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELK 206 (334)
Q Consensus 158 d~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~ 206 (334)
..+++.+.++++.+.|++.+.++..+... .+.....+.+++|++..
T Consensus 31 ~~~~~~~~a~~~~~~G~d~i~v~~~~~~~---~~~~~~~~~i~~i~~~~ 76 (253)
T 1h5y_A 31 EVGDPVEMAVRYEEEGADEIAILDITAAP---EGRATFIDSVKRVAEAV 76 (253)
T ss_dssp EEECHHHHHHHHHHTTCSCEEEEECCCCT---TTHHHHHHHHHHHHHHC
T ss_pred ecccHHHHHHHHHHcCCCEEEEEeCCccc---cCCcccHHHHHHHHHhc
Confidence 45688999999999999999887554321 12334567888888763
No 53
>3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum}
Probab=66.19 E-value=28 Score=32.34 Aligned_cols=73 Identities=18% Similarity=0.321 Sum_probs=50.6
Q ss_pred CCCHHHHHHHHHHHHHhCCCcceEeeceEEec-CCCHHHHHHHHHHHHHcCCcEEeec-cC-cCCCCCCCcccccCCHHH
Q 019890 241 RANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC-GETPDQVVSTMEKVRAAGVDVMTFG-QY-MRPSKRHMPVSEYITPEA 317 (334)
Q Consensus 241 ~~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGl-GETdEE~~etl~~Lre~gvd~vtig-qY-lrP~~~h~~v~~yv~P~~ 317 (334)
.-+.+++.++++.+.+...+ +.-+|+|. +.+-+|.++..+..+++|+|-+-+- +| .+|+ ..+-
T Consensus 65 ~Ls~~Er~~v~~~~~~~~~g----rvpviaGvg~~st~~ai~la~~A~~~Gadavlv~~P~y~~~~----------~~~l 130 (304)
T 3cpr_A 65 TTTAAEKLELLKAVREEVGD----RAKLIAGVGTNNTRTSVELAEAAASAGADGLLVVTPYYSKPS----------QEGL 130 (304)
T ss_dssp TSCHHHHHHHHHHHHHHHTT----TSEEEEECCCSCHHHHHHHHHHHHHTTCSEEEEECCCSSCCC----------HHHH
T ss_pred hCCHHHHHHHHHHHHHHhCC----CCcEEecCCCCCHHHHHHHHHHHHhcCCCEEEECCCCCCCCC----------HHHH
Confidence 35678888888888876433 34589999 4588999999999999999966543 33 3443 1223
Q ss_pred HHHHHHHHHH
Q 019890 318 FERYRALGME 327 (334)
Q Consensus 318 f~~~~~~a~~ 327 (334)
+++|+.+|..
T Consensus 131 ~~~f~~ia~a 140 (304)
T 3cpr_A 131 LAHFGAIAAA 140 (304)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 6666666654
No 54
>1xky_A Dihydrodipicolinate synthase; TIM barrel, , lysine biosynthesis;spine, lyase; 1.94A {Bacillus anthracis} SCOP: c.1.10.1 PDB: 1xl9_A 3hij_A*
Probab=65.94 E-value=28 Score=32.24 Aligned_cols=51 Identities=12% Similarity=0.253 Sum_probs=39.1
Q ss_pred CCHHHHHHHHHHHHHhCCCcceEeeceEEec-CCCHHHHHHHHHHHHHcCCcEEee
Q 019890 242 ANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC-GETPDQVVSTMEKVRAAGVDVMTF 296 (334)
Q Consensus 242 ~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGl-GETdEE~~etl~~Lre~gvd~vti 296 (334)
-+.+++.++++.+.+...+ +.-+|+|. +.+-+|.++..+..+++|+|-+-+
T Consensus 62 Ls~eEr~~v~~~~~~~~~g----rvpViaGvg~~~t~~ai~la~~A~~~Gadavlv 113 (301)
T 1xky_A 62 LTSEEKVALYRHVVSVVDK----RVPVIAGTGSNNTHASIDLTKKATEVGVDAVML 113 (301)
T ss_dssp SCHHHHHHHHHHHHHHHTT----SSCEEEECCCSCHHHHHHHHHHHHHTTCSEEEE
T ss_pred CCHHHHHHHHHHHHHHhCC----CceEEeCCCCCCHHHHHHHHHHHHhcCCCEEEE
Confidence 4567788888888775432 45689999 458899999999999999996544
No 55
>3b4u_A Dihydrodipicolinate synthase; structural genomics, PSI-2, MC protein structure initiative, midwest center for structural genomics; 1.20A {Agrobacterium tumefaciens str}
Probab=65.77 E-value=36 Score=31.34 Aligned_cols=52 Identities=12% Similarity=0.104 Sum_probs=40.9
Q ss_pred CCHHHHHHHHHHHHHhCCCcceEeeceEEec-CCCHHHHHHHHHHHHHcCCcEEeec
Q 019890 242 ANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC-GETPDQVVSTMEKVRAAGVDVMTFG 297 (334)
Q Consensus 242 ~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGl-GETdEE~~etl~~Lre~gvd~vtig 297 (334)
-+.+++.++++.+.+...+ +.-+|+|. +.+-+|.++..+..+++|+|-+-+-
T Consensus 53 Ls~~Er~~v~~~~~~~~~g----r~pviaGvg~~~t~~ai~la~~A~~~Gadavlv~ 105 (294)
T 3b4u_A 53 VGSRERQAILSSFIAAGIA----PSRIVTGVLVDSIEDAADQSAEALNAGARNILLA 105 (294)
T ss_dssp SCHHHHHHHHHHHHHTTCC----GGGEEEEECCSSHHHHHHHHHHHHHTTCSEEEEC
T ss_pred CCHHHHHHHHHHHHHHhCC----CCcEEEeCCCccHHHHHHHHHHHHhcCCCEEEEc
Confidence 4577888899988886443 34689999 4588999999999999999966553
No 56
>2ehh_A DHDPS, dihydrodipicolinate synthase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.90A {Aquifex aeolicus}
Probab=65.18 E-value=32 Score=31.71 Aligned_cols=51 Identities=16% Similarity=0.308 Sum_probs=39.6
Q ss_pred CCHHHHHHHHHHHHHhCCCcceEeeceEEecC-CCHHHHHHHHHHHHHcCCcEEee
Q 019890 242 ANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCG-ETPDQVVSTMEKVRAAGVDVMTF 296 (334)
Q Consensus 242 ~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGlG-ETdEE~~etl~~Lre~gvd~vti 296 (334)
-+.+++.++++.+.+...+ +.-+|+|.| .+-+|.++..+..+++|+|-+-+
T Consensus 50 Ls~~Er~~v~~~~~~~~~g----rvpviaGvg~~~t~~ai~la~~A~~~Gadavlv 101 (294)
T 2ehh_A 50 LTFEEHEKVIEFAVKRAAG----RIKVIAGTGGNATHEAVHLTAHAKEVGADGALV 101 (294)
T ss_dssp SCHHHHHHHHHHHHHHHTT----SSEEEEECCCSCHHHHHHHHHHHHHTTCSEEEE
T ss_pred CCHHHHHHHHHHHHHHhCC----CCcEEEecCCCCHHHHHHHHHHHHhcCCCEEEE
Confidence 4677888888888876433 345899994 58899999999999999996644
No 57
>3si9_A DHDPS, dihydrodipicolinate synthase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 2.10A {Bartonella henselae}
Probab=65.15 E-value=30 Score=32.45 Aligned_cols=52 Identities=12% Similarity=0.275 Sum_probs=40.7
Q ss_pred CCHHHHHHHHHHHHHhCCCcceEeeceEEec-CCCHHHHHHHHHHHHHcCCcEEeec
Q 019890 242 ANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC-GETPDQVVSTMEKVRAAGVDVMTFG 297 (334)
Q Consensus 242 ~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGl-GETdEE~~etl~~Lre~gvd~vtig 297 (334)
-+.+++.++++.+.+...+ +.-+|+|. +.+-+|.++..+..+++|+|-+-+-
T Consensus 72 Ls~~Er~~v~~~~v~~~~g----rvpViaGvg~~st~~ai~la~~A~~~Gadavlv~ 124 (315)
T 3si9_A 72 LTHEEHKRIIELCVEQVAK----RVPVVAGAGSNSTSEAVELAKHAEKAGADAVLVV 124 (315)
T ss_dssp SCHHHHHHHHHHHHHHHTT----SSCBEEECCCSSHHHHHHHHHHHHHTTCSEEEEE
T ss_pred cCHHHHHHHHHHHHHHhCC----CCcEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEC
Confidence 4577888888888876433 45689999 4689999999999999999976553
No 58
>3daq_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, diaminopimelate biosynthesis, lyase, schiff B; 1.45A {Staphylococcus aureus} SCOP: c.1.10.0 PDB: 3di1_A 3di0_A
Probab=64.69 E-value=30 Score=31.90 Aligned_cols=72 Identities=13% Similarity=0.249 Sum_probs=50.1
Q ss_pred CCHHHHHHHHHHHHHhCCCcceEeeceEEec-CCCHHHHHHHHHHHHHcCCcEEeec-cC-cCCCCCCCcccccCCHHHH
Q 019890 242 ANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC-GETPDQVVSTMEKVRAAGVDVMTFG-QY-MRPSKRHMPVSEYITPEAF 318 (334)
Q Consensus 242 ~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGl-GETdEE~~etl~~Lre~gvd~vtig-qY-lrP~~~h~~v~~yv~P~~f 318 (334)
-+.+++.++++.+.+...+ +.-+|+|. +.+-+|.++..+..+++|+|-+-+- +| ..|+. .+-+
T Consensus 52 Lt~~Er~~v~~~~~~~~~g----rvpviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~~~----------~~l~ 117 (292)
T 3daq_A 52 LTTDEKELILKTVIDLVDK----RVPVIAGTGTNDTEKSIQASIQAKALGADAIMLITPYYNKTNQ----------RGLV 117 (292)
T ss_dssp SCHHHHHHHHHHHHHHHTT----SSCEEEECCCSCHHHHHHHHHHHHHHTCSEEEEECCCSSCCCH----------HHHH
T ss_pred CCHHHHHHHHHHHHHHhCC----CCcEEEeCCcccHHHHHHHHHHHHHcCCCEEEECCCCCCCCCH----------HHHH
Confidence 4577888888888776432 45689999 4688999999999999999966554 23 34321 2336
Q ss_pred HHHHHHHHH
Q 019890 319 ERYRALGME 327 (334)
Q Consensus 319 ~~~~~~a~~ 327 (334)
++|+.+|..
T Consensus 118 ~~f~~ia~a 126 (292)
T 3daq_A 118 KHFEAIADA 126 (292)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 666666664
No 59
>1pii_A N-(5'phosphoribosyl)anthranilate isomerase; bifunctional(isomerase and synthase); 2.00A {Escherichia coli} SCOP: c.1.2.4 c.1.2.4 PDB: 1jcm_P* 2kzh_A
Probab=64.42 E-value=18 Score=35.94 Aligned_cols=136 Identities=16% Similarity=0.187 Sum_probs=82.3
Q ss_pred HHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhCCCCceeee-------eccccccccccc----------hhhHH
Q 019890 169 IASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEAL-------VAKSGLNVFAHN----------IETVE 231 (334)
Q Consensus 169 v~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~P~i~vE~L-------l~~ag~dv~~Hn----------lETv~ 231 (334)
++.+|.+-|.|..-. |++ ..+.++++..++..=...+|+- ..+.|.+++.-| +++..
T Consensus 126 a~~~GAD~ILLi~a~---l~~---~~l~~l~~~a~~lgm~~LvEvh~~eE~~~A~~lga~iIGinnr~L~t~~~dl~~~~ 199 (452)
T 1pii_A 126 ARYYQADACLLMLSV---LDD---DQYRQLAAVAHSLEMGVLTEVSNEEEQERAIALGAKVVGINNRDLRDLSIDLNRTR 199 (452)
T ss_dssp HHHTTCSEEEEETTT---CCH---HHHHHHHHHHHHTTCEEEEEECSHHHHHHHHHTTCSEEEEESEETTTTEECTHHHH
T ss_pred HHHcCCCEEEEEccc---CCH---HHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHCCCCEEEEeCCCCCCCCCCHHHHH
Confidence 678999998886543 332 4678888888775222344543 445677766655 57777
Q ss_pred HHHHhhcC--------CCCCHHHHHHHHHHHHHhCCCcceEeeceEEec--CCCHHHHH------------HHHHHHHHc
Q 019890 232 ELQSAVRD--------HRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC--GETPDQVV------------STMEKVRAA 289 (334)
Q Consensus 232 ~l~~~Vr~--------r~~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGl--GETdEE~~------------etl~~Lre~ 289 (334)
+|.+.+.+ .=.+.++-..+. +. -+|+.+++.||=.- ++.-.++. +......++
T Consensus 200 ~L~~~ip~~~~vIaEsGI~t~edv~~~~----~~-a~avLVGealmr~~d~~~~~~~l~~~~~KICGit~~eda~~a~~~ 274 (452)
T 1pii_A 200 ELAPKLGHNVTVISESGINTYAQVRELS----HF-ANGFLIGSALMAHDDLHAAVRRVLLGENKVCGLTRGQDAKAAYDA 274 (452)
T ss_dssp HHHHHHCTTSEEEEESCCCCHHHHHHHT----TT-CSEEEECHHHHTCSCHHHHHHHHHHCSCEECCCCSHHHHHHHHHH
T ss_pred HHHHhCCCCCeEEEECCCCCHHHHHHHH----Hh-CCEEEEcHHHcCCcCHHHHHHHHHHHhccccCCCcHHHHHHHHhc
Confidence 88777642 113444433332 22 24577777776431 22222332 344566788
Q ss_pred CCcEEeeccCcCCCCCCCcccccCCHHHHHHHH
Q 019890 290 GVDVMTFGQYMRPSKRHMPVSEYITPEAFERYR 322 (334)
Q Consensus 290 gvd~vtigqYlrP~~~h~~v~~yv~P~~f~~~~ 322 (334)
|.|.+++- |..+++| ||+|++...+.
T Consensus 275 Gad~iGfI-f~~~SpR------~V~~~~a~~i~ 300 (452)
T 1pii_A 275 GAIYGGLI-FVATSPR------CVNVEQAQEVM 300 (452)
T ss_dssp TCSEEEEE-CCTTCTT------BCCHHHHHHHH
T ss_pred CCCEEEee-cCCCCCC------CCCHHHHHHHH
Confidence 99999987 5556666 78887766653
No 60
>2yxg_A DHDPS, dihydrodipicolinate synthase; MJ0244, TIM beta/alpha-barrel fold, structural genomics, NPPSFA; 2.20A {Methanocaldococcus jannaschii DSM2661}
Probab=64.05 E-value=30 Score=31.80 Aligned_cols=51 Identities=14% Similarity=0.258 Sum_probs=39.2
Q ss_pred CCHHHHHHHHHHHHHhCCCcceEeeceEEecC-CCHHHHHHHHHHHHHcCCcEEee
Q 019890 242 ANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCG-ETPDQVVSTMEKVRAAGVDVMTF 296 (334)
Q Consensus 242 ~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGlG-ETdEE~~etl~~Lre~gvd~vti 296 (334)
-+.+++.++++.+.+...+ +.-+|+|.| .+-+|.++..+..+++|+|-+-+
T Consensus 50 Ls~~Er~~v~~~~~~~~~g----r~pviaGvg~~~t~~ai~la~~a~~~Gadavlv 101 (289)
T 2yxg_A 50 LSHEEHKKVIEKVVDVVNG----RVQVIAGAGSNCTEEAIELSVFAEDVGADAVLS 101 (289)
T ss_dssp SCHHHHHHHHHHHHHHHTT----SSEEEEECCCSSHHHHHHHHHHHHHHTCSEEEE
T ss_pred CCHHHHHHHHHHHHHHhCC----CCcEEEeCCCCCHHHHHHHHHHHHhcCCCEEEE
Confidence 4567888888888875432 345899994 58889999999999999996644
No 61
>1f6k_A N-acetylneuraminate lyase; beta barrel; 1.60A {Haemophilus influenzae} SCOP: c.1.10.1 PDB: 1f5z_A 1f6p_A 1f73_A* 1f74_A* 1f7b_A*
Probab=64.02 E-value=30 Score=31.82 Aligned_cols=72 Identities=15% Similarity=0.201 Sum_probs=49.5
Q ss_pred CCHHHHHHHHHHHHHhCCCcceEeeceEEec-CCCHHHHHHHHHHHHHcCCcEEee-ccC-cCCCCCCCcccccCCHHHH
Q 019890 242 ANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC-GETPDQVVSTMEKVRAAGVDVMTF-GQY-MRPSKRHMPVSEYITPEAF 318 (334)
Q Consensus 242 ~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGl-GETdEE~~etl~~Lre~gvd~vti-gqY-lrP~~~h~~v~~yv~P~~f 318 (334)
-+.+++.++++.+.+...+ +.-+|+|. +.+-+|.++..+..+++|+|-+-+ .+| .+|+. .+-+
T Consensus 54 Ls~~Er~~v~~~~~~~~~g----rvpviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~~~----------~~l~ 119 (293)
T 1f6k_A 54 LSTEEKKEIFRIAKDEAKD----QIALIAQVGSVNLKEAVELGKYATELGYDCLSAVTPFYYKFSF----------PEIK 119 (293)
T ss_dssp SCHHHHHHHHHHHHHHHTT----SSEEEEECCCSCHHHHHHHHHHHHHHTCSEEEEECCCSSCCCH----------HHHH
T ss_pred CCHHHHHHHHHHHHHHhCC----CCeEEEecCCCCHHHHHHHHHHHHhcCCCEEEECCCCCCCCCH----------HHHH
Confidence 4577888888888875432 34589999 558899999999999999996544 333 34431 2335
Q ss_pred HHHHHHHHH
Q 019890 319 ERYRALGME 327 (334)
Q Consensus 319 ~~~~~~a~~ 327 (334)
++|+.+|..
T Consensus 120 ~~f~~va~a 128 (293)
T 1f6k_A 120 HYYDTIIAE 128 (293)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 666666654
No 62
>2vc6_A MOSA, dihydrodipicolinate synthase; DHDPS, TIM barrel, schiff base, lyase; HET: MCL; 1.95A {Sinorhizobium meliloti}
Probab=63.96 E-value=33 Score=31.53 Aligned_cols=51 Identities=10% Similarity=0.233 Sum_probs=39.9
Q ss_pred CCHHHHHHHHHHHHHhCCCcceEeeceEEec-CCCHHHHHHHHHHHHHcCCcEEee
Q 019890 242 ANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC-GETPDQVVSTMEKVRAAGVDVMTF 296 (334)
Q Consensus 242 ~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGl-GETdEE~~etl~~Lre~gvd~vti 296 (334)
-+.+++.++++.+.+...+ +.-+|+|. +.+-+|.++..+..+++|+|-+-+
T Consensus 50 Ls~~Er~~v~~~~~~~~~g----r~pviaGvg~~~t~~ai~la~~A~~~Gadavlv 101 (292)
T 2vc6_A 50 LSKSEHEQVVEITIKTANG----RVPVIAGAGSNSTAEAIAFVRHAQNAGADGVLI 101 (292)
T ss_dssp SCHHHHHHHHHHHHHHHTT----SSCBEEECCCSSHHHHHHHHHHHHHTTCSEEEE
T ss_pred CCHHHHHHHHHHHHHHhCC----CCcEEEecCCccHHHHHHHHHHHHHcCCCEEEE
Confidence 4677888888888876432 35689999 558889999999999999996644
No 63
>3eb2_A Putative dihydrodipicolinate synthetase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2., structural genomics; HET: PGE; 2.04A {Rhodopseudomonas palustris} SCOP: c.1.10.0
Probab=63.70 E-value=23 Score=32.85 Aligned_cols=51 Identities=12% Similarity=0.124 Sum_probs=37.4
Q ss_pred CCHHHHHHHHHHHHHhCCCcceEeeceEEec-CCCHHHHHHHHHHHHHcCCcEEee
Q 019890 242 ANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC-GETPDQVVSTMEKVRAAGVDVMTF 296 (334)
Q Consensus 242 ~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGl-GETdEE~~etl~~Lre~gvd~vti 296 (334)
-+.+++.++++.+.+...+ +.-+|+|. +.+-+|.++..+..+++|+|-+-+
T Consensus 54 Ls~~Er~~v~~~~~~~~~g----rvpviaGvg~~~t~~ai~la~~a~~~Gadavlv 105 (300)
T 3eb2_A 54 LGTAQREAVVRATIEAAQR----RVPVVAGVASTSVADAVAQAKLYEKLGADGILA 105 (300)
T ss_dssp CCHHHHHHHHHHHHHHHTT----SSCBEEEEEESSHHHHHHHHHHHHHHTCSEEEE
T ss_pred cCHHHHHHHHHHHHHHhCC----CCcEEEeCCCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 4567778888887775432 34578888 468888888888888888886554
No 64
>1aj0_A DHPS, dihydropteroate synthase; antibiotic, resistance, transferase, folate, biosynthesis; HET: PH2 SAN; 2.00A {Escherichia coli} SCOP: c.1.21.1 PDB: 1aj2_A* 1ajz_A 3tyz_A* 3tyu_A* 3tzf_A* 3tzn_A
Probab=63.64 E-value=28 Score=32.41 Aligned_cols=130 Identities=10% Similarity=0.098 Sum_probs=76.0
Q ss_pred CCCchhHHHHHHHHHHCCCcEEEEee-ecCCCCC----CchHHHHHHHHHHHHhhCCCC--ceeee-------ecccccc
Q 019890 156 PPDPDEPTNVAEAIASWGLDYVVITS-VDRDDLA----DQGSGHFAQTVRKLKELKPNM--LIEAL-------VAKSGLN 221 (334)
Q Consensus 156 ~ld~~Ep~~~A~av~~~GlkeVVLTS-v~rdDl~----d~Ga~~fa~lIr~Ik~~~P~i--~vE~L-------l~~ag~d 221 (334)
..+++++.+.|+...+.|.+.|-|=+ ..|..-. +.....+..+|++|++.. ++ +|... -.++|.+
T Consensus 34 ~~~~~~a~~~a~~~v~~GAdiIDIGgestrPga~~v~~~eE~~rv~pvi~~l~~~~-~~piSIDT~~~~va~aAl~aGa~ 112 (282)
T 1aj0_A 34 HNSLIDAVKHANLMINAGATIIDVGGESTRPGAAEVSVEEELQRVIPVVEAIAQRF-EVWISVDTSKPEVIRESAKVGAH 112 (282)
T ss_dssp CTHHHHHHHHHHHHHHHTCSEEEEESSCCSTTCCCCCHHHHHHHHHHHHHHHHHHC-CCEEEEECCCHHHHHHHHHTTCC
T ss_pred cCCHHHHHHHHHHHHHCCCCEEEECCCcCCCCCCcCCHHHHHHHHHHHHHHHHhhc-CCeEEEeCCCHHHHHHHHHcCCC
Confidence 46789999999999999999998865 2332110 223456777888887653 33 33332 2345777
Q ss_pred ccccc----hhhHHHHHHh---------hcCCCCC--------------HHHHHHHHHHHHHhCCCcce---EeeceEEe
Q 019890 222 VFAHN----IETVEELQSA---------VRDHRAN--------------FKQSLDVLMMAKDYVPAGTL---TKTSIMLG 271 (334)
Q Consensus 222 v~~Hn----lETv~~l~~~---------Vr~r~~t--------------ye~sL~vL~~ak~~~p~Gl~---tkTgiMVG 271 (334)
++|+- .+..-.+-.. ++....+ .+...+.++.+.+. |+. +--+--+|
T Consensus 113 iINdvsg~~d~~~~~~~a~~~~~vVlmh~~G~p~tm~~~~~y~d~~~ev~~~l~~~i~~a~~~---Gi~~~~IilDPg~g 189 (282)
T 1aj0_A 113 IINDIRSLSEPGALEAAAETGLPVCLMHMQGNPKTMQEAPKYDDVFAEVNRYFIEQIARCEQA---GIAKEKLLLDPGFG 189 (282)
T ss_dssp EEEETTTTCSTTHHHHHHHHTCCEEEECCSSCTTCCSCCCCCSCHHHHHHHHHHHHHHHHHHT---TCCGGGEEEECCTT
T ss_pred EEEECCCCCCHHHHHHHHHhCCeEEEEccCCCCccccccCccchHHHHHHHHHHHHHHHHHHc---CCChhhEEEeCCCC
Confidence 76653 1111111110 0100011 44455666777764 543 34444568
Q ss_pred cCCCHHHHHHHHHHHHHc
Q 019890 272 CGETPDQVVSTMEKVRAA 289 (334)
Q Consensus 272 lGETdEE~~etl~~Lre~ 289 (334)
||.|.++-.++|+.|+++
T Consensus 190 f~k~~~~n~~ll~~l~~~ 207 (282)
T 1aj0_A 190 FGKNLSHNYSLLARLAEF 207 (282)
T ss_dssp SSCCHHHHHHHHHTGGGG
T ss_pred cccCHHHHHHHHHHHHHH
Confidence 999999888888887765
No 65
>2rfg_A Dihydrodipicolinate synthase; beta barrel, amino-acid biosynthesis, diaminopimelate biosyn lyase, lysine biosynthesis, schiff base; 1.50A {Hahella chejuensis}
Probab=62.87 E-value=31 Score=31.88 Aligned_cols=51 Identities=14% Similarity=0.294 Sum_probs=40.2
Q ss_pred CCHHHHHHHHHHHHHhCCCcceEeeceEEec-CCCHHHHHHHHHHHHHcCCcEEee
Q 019890 242 ANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC-GETPDQVVSTMEKVRAAGVDVMTF 296 (334)
Q Consensus 242 ~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGl-GETdEE~~etl~~Lre~gvd~vti 296 (334)
-+.+++.++++.+.+...+ +.-+|+|. +.+-+|.++..+..+++|+|-+-+
T Consensus 50 Ls~~Er~~v~~~~~~~~~g----rvpviaGvg~~~t~~ai~la~~A~~~Gadavlv 101 (297)
T 2rfg_A 50 LTEEEHKRVVALVAEQAQG----RVPVIAGAGSNNPVEAVRYAQHAQQAGADAVLC 101 (297)
T ss_dssp SCHHHHHHHHHHHHHHHTT----SSCBEEECCCSSHHHHHHHHHHHHHHTCSEEEE
T ss_pred CCHHHHHHHHHHHHHHhCC----CCeEEEccCCCCHHHHHHHHHHHHhcCCCEEEE
Confidence 4677888888888876432 35689999 458899999999999999997655
No 66
>3lot_A Uncharacterized protein; protein of unknown function, structural genomics, joint CENT structural genomics, JCSG; HET: MSE; 1.89A {Archaeoglobus fulgidus}
Probab=62.80 E-value=13 Score=35.22 Aligned_cols=56 Identities=25% Similarity=0.301 Sum_probs=43.4
Q ss_pred CCCCchhHHHHHHHHHHCCCcEEEEeeecC-CCCCCchHHHHHHHHHHHHhhCCCCce
Q 019890 155 PPPDPDEPTNVAEAIASWGLDYVVITSVDR-DDLADQGSGHFAQTVRKLKELKPNMLI 211 (334)
Q Consensus 155 ~~ld~~Ep~~~A~av~~~GlkeVVLTSv~r-dDl~d~Ga~~fa~lIr~Ik~~~P~i~v 211 (334)
.|+.++|+.+.|.+..+.|..-|.|=-.|. |.-+....+.|+++++.|++. +++.|
T Consensus 27 lPvTpeEia~~A~~~~~AGAaivHlHvRdp~dG~ps~d~~~y~e~i~~IR~~-~d~iI 83 (314)
T 3lot_A 27 LPVTPDQIVEEAVKAAEAGAGMVHIHARDPKDGRPTTDVEVFRYICREIKKQ-SDVVI 83 (314)
T ss_dssp SCCSHHHHHHHHHHHHHHTCSEEEECEECTTTCCEECCHHHHHHHHHHHHHH-CCCEE
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEeecCCCCCCcCCCHHHHHHHHHHHHhc-CCeEE
Confidence 478999999999999999998888866653 223444578999999999986 45433
No 67
>3dz1_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2, structural genomics; 1.87A {Rhodopseudomonas palustris} SCOP: c.1.10.0
Probab=62.78 E-value=36 Score=31.74 Aligned_cols=71 Identities=10% Similarity=0.037 Sum_probs=50.8
Q ss_pred CCHHHHHHHHHHHHHhCCCcceEeeceEEec-CCCHHHHHHHHHHHHHcCCcEEeeccCcCCCCCCCcccccCCH-HHHH
Q 019890 242 ANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC-GETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMPVSEYITP-EAFE 319 (334)
Q Consensus 242 ~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGl-GETdEE~~etl~~Lre~gvd~vtigqYlrP~~~h~~v~~yv~P-~~f~ 319 (334)
-+.+++.++++.+.+.. + +.-+|+|. +.+-+|.++..+..+++|+|-+-+- .|... .++ +-++
T Consensus 58 Lt~~Er~~v~~~~v~~~-g----rvpViaGvg~~~t~~ai~la~~A~~~Gadavlv~---~P~~~-------~s~~~l~~ 122 (313)
T 3dz1_A 58 LDAAEAEAVATRFIKRA-K----SMQVIVGVSAPGFAAMRRLARLSMDAGAAGVMIA---PPPSL-------RTDEQITT 122 (313)
T ss_dssp SCHHHHHHHHHHHHHHC-T----TSEEEEECCCSSHHHHHHHHHHHHHHTCSEEEEC---CCTTC-------CSHHHHHH
T ss_pred CCHHHHHHHHHHHHHHc-C----CCcEEEecCCCCHHHHHHHHHHHHHcCCCEEEEC---CCCCC-------CCHHHHHH
Confidence 45788889999888875 3 35589999 4799999999999999999977664 22110 123 2367
Q ss_pred HHHHHHHH
Q 019890 320 RYRALGME 327 (334)
Q Consensus 320 ~~~~~a~~ 327 (334)
+|+.+|..
T Consensus 123 ~f~~va~a 130 (313)
T 3dz1_A 123 YFRQATEA 130 (313)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 77777765
No 68
>3fkr_A L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL family, complex, pyruvate, lyase; HET: KPI; 1.80A {Azospirillum brasilense} PDB: 3fkk_A
Probab=62.78 E-value=38 Score=31.53 Aligned_cols=51 Identities=4% Similarity=0.019 Sum_probs=34.7
Q ss_pred CCHHHHHHHHHHHHHhCCCcceEeeceEEec-CCCHHHHHHHHHHHHHcCCcEEee
Q 019890 242 ANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC-GETPDQVVSTMEKVRAAGVDVMTF 296 (334)
Q Consensus 242 ~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGl-GETdEE~~etl~~Lre~gvd~vti 296 (334)
-+.+++.++++.+.+...+ +.-+|+|. +.+-+|.++..+..+++|+|-+-+
T Consensus 58 Ls~~Er~~v~~~~~~~~~g----rvpviaGvg~~~t~~ai~la~~A~~~Gadavlv 109 (309)
T 3fkr_A 58 ITDDERDVLTRTILEHVAG----RVPVIVTTSHYSTQVCAARSLRAQQLGAAMVMA 109 (309)
T ss_dssp SCHHHHHHHHHHHHHHHTT----SSCEEEECCCSSHHHHHHHHHHHHHTTCSEEEE
T ss_pred CCHHHHHHHHHHHHHHhCC----CCcEEEecCCchHHHHHHHHHHHHHcCCCEEEE
Confidence 3456677777777665322 34577888 457777888888888888886554
No 69
>1wbh_A KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli} SCOP: c.1.10.1 PDB: 2c0a_A 1wau_A 1eua_A 1eun_A 1fq0_A* 1fwr_A*
Probab=62.33 E-value=61 Score=28.50 Aligned_cols=104 Identities=15% Similarity=0.191 Sum_probs=66.7
Q ss_pred CCCchhHHHHHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhCCCCceee---e-------ecccccccccc
Q 019890 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEA---L-------VAKSGLNVFAH 225 (334)
Q Consensus 156 ~ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~P~i~vE~---L-------l~~ag~dv~~H 225 (334)
..++++..+.++++.+.|++-|-|+--+ ++ -.+.|+++++..|++.+.. + ..++|.|.+.
T Consensus 24 ~~~~~~~~~~~~al~~gGv~~iel~~k~----~~-----~~~~i~~l~~~~~~~~vgagtvi~~d~~~~A~~aGAd~v~- 93 (214)
T 1wbh_A 24 VKKLEHAVPMAKALVAGGVRVLNVTLRT----EC-----AVDAIRAIAKEVPEAIVGAGTVLNPQQLAEVTEAGAQFAI- 93 (214)
T ss_dssp CSSGGGHHHHHHHHHHTTCCEEEEESCS----TT-----HHHHHHHHHHHCTTSEEEEESCCSHHHHHHHHHHTCSCEE-
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeCCC----hh-----HHHHHHHHHHHCcCCEEeeCEEEEHHHHHHHHHcCCCEEE-
Confidence 3578899999999999999999887322 11 1457888888888653321 1 3344544332
Q ss_pred chhhHHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCcceEeeceEEecCCCHHHHHHHHHHHHHcCCcEEeecc
Q 019890 226 NIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQ 298 (334)
Q Consensus 226 nlETv~~l~~~Vr~r~~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGlGETdEE~~etl~~Lre~gvd~vtigq 298 (334)
- +.. ..++++.+++. | ..+|.| -.|.+|+.+. .+.|+|++.+|+
T Consensus 94 ~-------------p~~----d~~v~~~~~~~---g----~~~i~G-~~t~~e~~~A----~~~Gad~v~~Fp 137 (214)
T 1wbh_A 94 S-------------PGL----TEPLLKAATEG---T----IPLIPG-ISTVSELMLG----MDYGLKEFKFFP 137 (214)
T ss_dssp E-------------SSC----CHHHHHHHHHS---S----SCEEEE-ESSHHHHHHH----HHTTCCEEEETT
T ss_pred c-------------CCC----CHHHHHHHHHh---C----CCEEEe-cCCHHHHHHH----HHCCCCEEEEec
Confidence 1 111 24666666664 3 345667 4667776554 378999999975
No 70
>3m5v_A DHDPS, dihydrodipicolinate synthase; TIM barrel, csgid, amino-acid biosynthesis, diaminopimelate biosynthesis, lyase, lysine biosynthesis; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.1.10.0 PDB: 3ler_A*
Probab=62.07 E-value=36 Score=31.45 Aligned_cols=53 Identities=15% Similarity=0.236 Sum_probs=40.8
Q ss_pred CCHHHHHHHHHHHHHhCCCcceEeeceEEecC-CCHHHHHHHHHHHHHcCCcEEeec
Q 019890 242 ANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCG-ETPDQVVSTMEKVRAAGVDVMTFG 297 (334)
Q Consensus 242 ~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGlG-ETdEE~~etl~~Lre~gvd~vtig 297 (334)
-+.+++.++++.+.+...+ .+.-+|+|.| .+-+|.++..+..+++|+|-+-+-
T Consensus 57 Ls~~Er~~v~~~~~~~~~g---~rvpviaGvg~~~t~~ai~la~~a~~~Gadavlv~ 110 (301)
T 3m5v_A 57 LTHEEHRTCIEIAVETCKG---TKVKVLAGAGSNATHEAVGLAKFAKEHGADGILSV 110 (301)
T ss_dssp SCHHHHHHHHHHHHHHHTT---SSCEEEEECCCSSHHHHHHHHHHHHHTTCSEEEEE
T ss_pred CCHHHHHHHHHHHHHHhCC---CCCeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEc
Confidence 4577888888888876432 1356899994 689999999999999999976554
No 71
>2r8w_A AGR_C_1641P; APC7498, dihydrodipicolinate synthase, agrobacterium tumefac C58, structural genomics, PSI-2; HET: MSE; 1.80A {Agrobacterium tumefaciens str}
Probab=61.97 E-value=32 Score=32.50 Aligned_cols=51 Identities=20% Similarity=0.324 Sum_probs=39.3
Q ss_pred CCHHHHHHHHHHHHHhCCCcceEeeceEEecC-CCHHHHHHHHHHHHHcCCcEEee
Q 019890 242 ANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCG-ETPDQVVSTMEKVRAAGVDVMTF 296 (334)
Q Consensus 242 ~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGlG-ETdEE~~etl~~Lre~gvd~vti 296 (334)
-+.+++.++++.+.+...+ +.-+|+|.| .+-+|.++..+..+++|+|-+-+
T Consensus 84 Ls~eEr~~vi~~~ve~~~g----rvpViaGvg~~st~eai~la~~A~~~Gadavlv 135 (332)
T 2r8w_A 84 LTREERRRAIEAAATILRG----RRTLMAGIGALRTDEAVALAKDAEAAGADALLL 135 (332)
T ss_dssp SCHHHHHHHHHHHHHHHTT----SSEEEEEECCSSHHHHHHHHHHHHHHTCSEEEE
T ss_pred CCHHHHHHHHHHHHHHhCC----CCcEEEecCCCCHHHHHHHHHHHHhcCCCEEEE
Confidence 4567788888888876433 345899994 58899999999999999996654
No 72
>2v9d_A YAGE; dihydrodipicolinic acid synthase, N-acetyl neuraminate lyase, NAL, lyase, DHDPS, prophage; 2.15A {Escherichia coli} PDB: 2v8z_A 3nev_A* 3n2x_A*
Probab=61.79 E-value=32 Score=32.66 Aligned_cols=51 Identities=16% Similarity=0.315 Sum_probs=39.2
Q ss_pred CCHHHHHHHHHHHHHhCCCcceEeeceEEecC-CCHHHHHHHHHHHHHcCCcEEee
Q 019890 242 ANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCG-ETPDQVVSTMEKVRAAGVDVMTF 296 (334)
Q Consensus 242 ~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGlG-ETdEE~~etl~~Lre~gvd~vti 296 (334)
-+.+++.++++.+.+...+ +.-+|+|.| .+-+|.++..+..+++|+|-+-+
T Consensus 81 Ls~eEr~~vi~~~ve~~~g----rvpViaGvg~~st~eai~la~~A~~~Gadavlv 132 (343)
T 2v9d_A 81 LGAEERKAIARFAIDHVDR----RVPVLIGTGGTNARETIELSQHAQQAGADGIVV 132 (343)
T ss_dssp SCHHHHHHHHHHHHHHHTT----SSCEEEECCSSCHHHHHHHHHHHHHHTCSEEEE
T ss_pred CCHHHHHHHHHHHHHHhCC----CCcEEEecCCCCHHHHHHHHHHHHhcCCCEEEE
Confidence 4567788888888875432 456899994 68889999999999999996544
No 73
>1w5q_A Delta-aminolevulinic acid dehydratase; synthase, evolution, metalloenzyme, porphobilinogen synthase, protein engineering,; 1.4A {Pseudomonas aeruginosa} PDB: 1w5p_A* 1w5o_A 1w5n_A 1w56_A 1w5m_A 1w54_A 1gzg_A* 1b4k_A 2woq_A* 2c14_A* 2c16_A* 2c19_A* 2c15_A* 2c18_A* 2c13_A*
Probab=61.48 E-value=6.9 Score=37.61 Aligned_cols=123 Identities=19% Similarity=0.189 Sum_probs=75.2
Q ss_pred CCCchhHHHHHHHHHHCCCcEEEEeeecCCCCCCc-h------HHHHHHHHHHHHhhCCCCcee--e-e--ecccccc--
Q 019890 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQ-G------SGHFAQTVRKLKELKPNMLIE--A-L--VAKSGLN-- 221 (334)
Q Consensus 156 ~ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~-G------a~~fa~lIr~Ik~~~P~i~vE--~-L--l~~ag~d-- 221 (334)
.++.+.+.++++.+.++|++-|.|=|+-.+.+.|. | -.-+.+.|++||+.+|++.|= + | ..+-|=+
T Consensus 62 r~sid~l~~~~~~~~~lGi~~v~LFgv~~~~~KD~~gs~A~~~~g~v~rair~iK~~~pdl~vitDvcLc~YT~HGHcGi 141 (337)
T 1w5q_A 62 RLSIDQLLIEAEEWVALGIPALALFPVTPVEKKSLDAAEAYNPEGIAQRATRALRERFPELGIITDVCLCEFTTHGQCGI 141 (337)
T ss_dssp EEEHHHHHHHHHHHHHTTCCEEEEEECCCGGGCBSSCGGGGCTTSHHHHHHHHHHHHCTTSEEEEEECSTTTBTTCCSSC
T ss_pred eeCHHHHHHHHHHHHHCCCCEEEEecCCCcccCCcccCccCCCCChHHHHHHHHHHHCCCeEEEEeeecccCCCCCccee
Confidence 46889999999999999999999999832111211 1 125678999999999996442 1 1 1111111
Q ss_pred ----ccccchhhHHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCcceEeeceEEecCCCHHHHHHHHHHHHHcCCcEEeec
Q 019890 222 ----VFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFG 297 (334)
Q Consensus 222 ----v~~HnlETv~~l~~~Vr~r~~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGlGETdEE~~etl~~Lre~gvd~vtig 297 (334)
-.-.|-+|++.|-+. -|.+|+. --+ ++--|++|=|- +...=+-|.+.|+..+.|-
T Consensus 142 l~~~g~V~ND~Tl~~L~k~-------------Als~A~A-GAD-iVAPSdMMDGr------V~aIR~aLd~~G~~~v~Im 200 (337)
T 1w5q_A 142 LDDDGYVLNDVSIDVLVRQ-------------ALSHAEA-GAQ-VVAPSDMMDGR------IGAIREALESAGHTNVRVM 200 (337)
T ss_dssp BCTTSCBCHHHHHHHHHHH-------------HHHHHHT-TCS-EEEECSCCTTH------HHHHHHHHHHTTCTTCEEE
T ss_pred eCCCCcCccHHHHHHHHHH-------------HHHHHHc-CCC-eEecccccccH------HHHHHHHHHHCCCCCceee
Confidence 112355566655322 1223433 123 56678888664 3344445788888878877
Q ss_pred cC
Q 019890 298 QY 299 (334)
Q Consensus 298 qY 299 (334)
.|
T Consensus 201 sY 202 (337)
T 1w5q_A 201 AY 202 (337)
T ss_dssp EE
T ss_pred hh
Confidence 76
No 74
>2wkj_A N-acetylneuraminate lyase; directed evolution, sialic acid mimetics, aldolase, S base, carbohydrate metabolism, N-acetylneuraminic acid LYAS; HET: KPI PYR; 1.45A {Escherichia coli} PDB: 2wnq_A 2xfw_A* 2wpb_A* 2wnz_A* 2ygy_A* 2wo5_A* 2wnn_A* 3lbm_A 3lbc_A 3lcf_A 3lcl_A 3lcg_A 3lch_A 3lci_A 1hl2_A 1fdy_A 1fdz_A 1nal_1 3lcx_A 3lcw_A
Probab=61.17 E-value=34 Score=31.72 Aligned_cols=51 Identities=12% Similarity=0.206 Sum_probs=38.6
Q ss_pred CCHHHHHHHHHHHHHhCCCcceEeeceEEecC-CCHHHHHHHHHHHHHcCCcEEee
Q 019890 242 ANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCG-ETPDQVVSTMEKVRAAGVDVMTF 296 (334)
Q Consensus 242 ~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGlG-ETdEE~~etl~~Lre~gvd~vti 296 (334)
-+.+++.++++.+.+...+ +.-+|+|.| .+-+|.++..+..+++|+|-+-+
T Consensus 61 Ls~eEr~~v~~~~~~~~~g----rvpViaGvg~~~t~~ai~la~~A~~~Gadavlv 112 (303)
T 2wkj_A 61 QSLSEREQVLEIVAEEAKG----KIKLIAHVGCVSTAESQQLAASAKRYGFDAVSA 112 (303)
T ss_dssp SCHHHHHHHHHHHHHHHTT----TSEEEEECCCSSHHHHHHHHHHHHHHTCSEEEE
T ss_pred CCHHHHHHHHHHHHHHhCC----CCcEEEecCCCCHHHHHHHHHHHHhCCCCEEEe
Confidence 4567778888888775432 345889995 47788999999999999996644
No 75
>3s5o_A 4-hydroxy-2-oxoglutarate aldolase, mitochondrial; beta barrel, schiff base, hydroxyproline metabolis; HET: KPI; 1.97A {Homo sapiens} SCOP: c.1.10.0 PDB: 3s5n_A
Probab=61.10 E-value=46 Score=30.86 Aligned_cols=51 Identities=18% Similarity=0.335 Sum_probs=40.8
Q ss_pred CCHHHHHHHHHHHHHhCCCcceEeeceEEecC-CCHHHHHHHHHHHHHcCCcEEee
Q 019890 242 ANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCG-ETPDQVVSTMEKVRAAGVDVMTF 296 (334)
Q Consensus 242 ~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGlG-ETdEE~~etl~~Lre~gvd~vti 296 (334)
-+.+++.++++.+.+...+ +.-+|+|.| .+-+|.++..+..+++|+|-+-+
T Consensus 64 Ls~~Er~~v~~~~~~~~~g----r~pviaGvg~~~t~~ai~la~~A~~~Gadavlv 115 (307)
T 3s5o_A 64 LTSSERLEVVSRVRQAMPK----NRLLLAGSGCESTQATVEMTVSMAQVGADAAMV 115 (307)
T ss_dssp SCHHHHHHHHHHHHHTSCT----TSEEEEECCCSSHHHHHHHHHHHHHTTCSEEEE
T ss_pred CCHHHHHHHHHHHHHHcCC----CCcEEEecCCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 4577888889888886543 346889994 68999999999999999997666
No 76
>3l21_A DHDPS, dihydrodipicolinate synthase; DAPA, dimer, RV2753C, lysine biosynthesis, amino-acid biosynthesis, diaminopimelate biosynthesis; HET: KPI CME; 2.10A {Mycobacterium tuberculosis} SCOP: c.1.10.1 PDB: 1xxx_A
Probab=60.92 E-value=28 Score=32.38 Aligned_cols=52 Identities=10% Similarity=0.147 Sum_probs=40.9
Q ss_pred CCHHHHHHHHHHHHHhCCCcceEeeceEEec-CCCHHHHHHHHHHHHHcCCcEEeec
Q 019890 242 ANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC-GETPDQVVSTMEKVRAAGVDVMTFG 297 (334)
Q Consensus 242 ~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGl-GETdEE~~etl~~Lre~gvd~vtig 297 (334)
-+.+++.++++.+.+...+ +.-+|+|. +.+-+|.++..+..+++|+|-+-+.
T Consensus 65 Lt~~Er~~v~~~~~~~~~g----rvpviaGvg~~~t~~ai~la~~a~~~Gadavlv~ 117 (304)
T 3l21_A 65 TTDGEKIELLRAVLEAVGD----RARVIAGAGTYDTAHSIRLAKACAAEGAHGLLVV 117 (304)
T ss_dssp SCHHHHHHHHHHHHHHHTT----TSEEEEECCCSCHHHHHHHHHHHHHHTCSEEEEE
T ss_pred CCHHHHHHHHHHHHHHhCC----CCeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEC
Confidence 4577888888888876433 35689999 5788999999999999999976554
No 77
>1o5k_A DHDPS, dihydrodipicolinate synthase; TM1521, structural genomics, J protein structure initiative, joint center for structural G lyase; HET: MCL; 1.80A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 3pb2_A 3pb0_A
Probab=60.79 E-value=32 Score=31.97 Aligned_cols=51 Identities=10% Similarity=0.242 Sum_probs=39.4
Q ss_pred CCHHHHHHHHHHHHHhCCCcceEeeceEEec-CCCHHHHHHHHHHHHHcCCcEEee
Q 019890 242 ANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC-GETPDQVVSTMEKVRAAGVDVMTF 296 (334)
Q Consensus 242 ~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGl-GETdEE~~etl~~Lre~gvd~vti 296 (334)
-+.+++.++++.+.+...+ +.-+|+|. +.+-+|.++..+..+++|+|-+-+
T Consensus 62 Ls~eEr~~vi~~~~~~~~g----rvpViaGvg~~st~~ai~la~~A~~~Gadavlv 113 (306)
T 1o5k_A 62 VNEDEREKLVSRTLEIVDG----KIPVIVGAGTNSTEKTLKLVKQAEKLGANGVLV 113 (306)
T ss_dssp CCHHHHHHHHHHHHHHHTT----SSCEEEECCCSCHHHHHHHHHHHHHHTCSEEEE
T ss_pred CCHHHHHHHHHHHHHHhCC----CCeEEEcCCCccHHHHHHHHHHHHhcCCCEEEE
Confidence 4567888888888875432 35689999 458899999999999999996544
No 78
>2e6f_A Dihydroorotate dehydrogenase; chagas disease, pyrimidine biosynthesis, fumarate reductase, energy metabolism, redox homeostasis, flavoprotein; HET: FMN OXC; 1.26A {Trypanosoma cruzi} PDB: 2e6a_A* 2e6d_A* 2e68_A* 2djl_A* 2djx_A* 3c3n_A* 2b4g_A* 3c61_A* 3mhu_A* 3mjy_A*
Probab=59.94 E-value=17 Score=33.42 Aligned_cols=52 Identities=10% Similarity=-0.141 Sum_probs=37.2
Q ss_pred CHHHHHHHHHHHHHhCCCcceEeeceEEecCCCHHHHHHHHHHHHHcC-CcEEeecc
Q 019890 243 NFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAG-VDVMTFGQ 298 (334)
Q Consensus 243 tye~sL~vL~~ak~~~p~Gl~tkTgiMVGlGETdEE~~etl~~Lre~g-vd~vtigq 298 (334)
+.+...++++.+++...--+.+|. ..+-+.+++.+..+.+.+.| +|.+.+..
T Consensus 144 ~~~~~~~ii~~vr~~~~~Pv~vK~----~~~~~~~~~~~~a~~~~~aG~~d~i~v~~ 196 (314)
T 2e6f_A 144 DFEAMRTYLQQVSLAYGLPFGVKM----PPYFDIAHFDTAAAVLNEFPLVKFVTCVN 196 (314)
T ss_dssp SHHHHHHHHHHHHHHHCSCEEEEE----CCCCCHHHHHHHHHHHHTCTTEEEEEECC
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEE----CCCCCHHHHHHHHHHHHhcCCceEEEEeC
Confidence 667778899998885311133332 23458889999999999999 99987653
No 79
>3obk_A Delta-aminolevulinic acid dehydratase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, lyase; HET: PBG; 2.50A {Toxoplasma gondii ME49}
Probab=59.20 E-value=10 Score=36.75 Aligned_cols=132 Identities=17% Similarity=0.221 Sum_probs=77.6
Q ss_pred ccCCCCCCCCCCchhHHHHHHHHHHCCCcEEEEeeecCCCCCCc-hH------HHHHHHHHHHHhhCCCCcee--e-e--
Q 019890 147 NVKTSRAPPPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQ-GS------GHFAQTVRKLKELKPNMLIE--A-L-- 214 (334)
Q Consensus 147 ~V~~~r~p~~ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~-Ga------~~fa~lIr~Ik~~~P~i~vE--~-L-- 214 (334)
.|++-.+-...+.+.+.++++.+.++|++-|.|=|+...+..|. |. .-+.+.|++||+.+|++.|= + |
T Consensus 60 ~I~SMPGv~r~sid~l~~~~~~~~~lGi~av~LFgv~~p~~KD~~gs~A~~~~g~v~rAir~iK~~~P~l~VitDVcLc~ 139 (356)
T 3obk_A 60 PIPSMPGQSRLSMEDLLKEVGEARSYGIKAFMLFPKVDDELKSVMAEESYNPDGLLPRAIMALKEAFPDVLLLADVALDP 139 (356)
T ss_dssp ECTTSTTCEEECHHHHHHHHHHHHHTTCCEEEEEEECCGGGCBSSCGGGGCTTSHHHHHHHHHHHHSTTCEEEEEECSGG
T ss_pred ccCCCCCceEECHHHHHHHHHHHHHCCCCEEEEecCCCcccCCcccccccCCCChHHHHHHHHHHHCCCCEEEEeecccc
Confidence 45554333457899999999999999999999999832122221 11 24568999999999986442 1 1
Q ss_pred ecccccc-------ccccchhhHHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCcceEeeceEEecCCCHHHHHHHHHHHH
Q 019890 215 VAKSGLN-------VFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVR 287 (334)
Q Consensus 215 l~~ag~d-------v~~HnlETv~~l~~~Vr~r~~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGlGETdEE~~etl~~Lr 287 (334)
..+-|=+ -.-.|-+|++.|-+. -|.+|+. --+ ++--|++|=|- +...=+.|.
T Consensus 140 YT~HGHcGil~~~~g~V~ND~Tl~~Lak~-------------Als~A~A-GAD-iVAPSdMMDGr------V~aIR~aLd 198 (356)
T 3obk_A 140 YSSMGHDGVVDEQSGKIVNDLTVHQLCKQ-------------AITLARA-GAD-MVCPSDMMDGR------VSAIRESLD 198 (356)
T ss_dssp GBTTCCSSCBCTTTCCBCHHHHHHHHHHH-------------HHHHHHH-TCS-EEEECSCCTTH------HHHHHHHHH
T ss_pred ccCCCcceeeeCCCCCCCCHHHHHHHHHH-------------HHHHHHc-CCC-eEeccccccCH------HHHHHHHHH
Confidence 1111111 112255566655422 1223433 123 56677777663 333334567
Q ss_pred HcCCcEEeeccC
Q 019890 288 AAGVDVMTFGQY 299 (334)
Q Consensus 288 e~gvd~vtigqY 299 (334)
+.|+..+.|-.|
T Consensus 199 ~~G~~~v~IMsY 210 (356)
T 3obk_A 199 MEGCTDTSILAY 210 (356)
T ss_dssp HTTCTTSEEEEE
T ss_pred HCCCCCcceehh
Confidence 778777777665
No 80
>2vp8_A Dihydropteroate synthase 2; RV1207 transferase, folate biosynthesis, antibiotic resistance; 2.64A {Mycobacterium tuberculosis}
Probab=59.08 E-value=20 Score=34.09 Aligned_cols=58 Identities=14% Similarity=0.173 Sum_probs=34.7
Q ss_pred CCCchhHHHHHHHHHHCCCcEEEEeeec-CCC--CC-CchHHHHHHHHHHHHhhCCCCceee
Q 019890 156 PPDPDEPTNVAEAIASWGLDYVVITSVD-RDD--LA-DQGSGHFAQTVRKLKELKPNMLIEA 213 (334)
Q Consensus 156 ~ld~~Ep~~~A~av~~~GlkeVVLTSv~-rdD--l~-d~Ga~~fa~lIr~Ik~~~P~i~vE~ 213 (334)
..+.+++.+.|+...+.|.+.|-|=+.. |.. .+ +.....+..+|++|++..|++.|.+
T Consensus 61 ~~~~~~a~~~A~~~v~~GAdIIDIGgeSTrPG~~v~~~eEl~Rv~pvI~~l~~~~~~vpISI 122 (318)
T 2vp8_A 61 TFSDAAARDAVHRAVADGADVIDVGGVKAGPGERVDVDTEITRLVPFIEWLRGAYPDQLISV 122 (318)
T ss_dssp ---CHHHHHHHHHHHHTTCSEEEEC----------CHHHHHHHHHHHHHHHHHHSTTCEEEE
T ss_pred cCCHHHHHHHHHHHHHCCCCEEEECCCcCCCCCCCCHHHHHHHHHHHHHHHHhhCCCCeEEE
Confidence 5689999999999999999988775421 111 11 1123455666888887766654433
No 81
>2dqw_A Dihydropteroate synthase; dimer, structural genomics; 1.65A {Thermus thermophilus} PDB: 2dza_A* 2dzb_A*
Probab=58.90 E-value=87 Score=29.28 Aligned_cols=126 Identities=13% Similarity=0.182 Sum_probs=65.7
Q ss_pred CCCchhHHHHHHHHHHCCCcEEEEeeec-CCC---C-CCchHHHHHHHHHHHHhhCCCC--ceeee-------ecccccc
Q 019890 156 PPDPDEPTNVAEAIASWGLDYVVITSVD-RDD---L-ADQGSGHFAQTVRKLKELKPNM--LIEAL-------VAKSGLN 221 (334)
Q Consensus 156 ~ld~~Ep~~~A~av~~~GlkeVVLTSv~-rdD---l-~d~Ga~~fa~lIr~Ik~~~P~i--~vE~L-------l~~ag~d 221 (334)
..+.+++.+.|+...+.|.+.|-|=+.. |.. . .+.....+..+|++|++. ++ +|... -.++|.+
T Consensus 48 ~~~~~~a~~~a~~~v~~GAdIIDIGgeSTrPga~~v~~~eE~~Rv~pvI~~l~~~--~vpiSIDT~~~~Va~aAl~aGa~ 125 (294)
T 2dqw_A 48 YLDPERALERAREMVAEGADILDLGAESTRPGAAPVPVEEEKRRLLPVLEAVLSL--GVPVSVDTRKPEVAEEALKLGAH 125 (294)
T ss_dssp -----CCHHHHHHHHHHTCSEEEEECC-----------CCHHHHHHHHHHHHHTT--CSCEEEECSCHHHHHHHHHHTCS
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHhC--CCeEEEECCCHHHHHHHHHhCCC
Confidence 4688999999999999999998875521 211 0 123456677888888754 43 33322 2234666
Q ss_pred cccc----chhhHHHHHHh-------hcCC---CCC--------------HHHHHHHHHHHHHhCCCcceEeeceEE---
Q 019890 222 VFAH----NIETVEELQSA-------VRDH---RAN--------------FKQSLDVLMMAKDYVPAGTLTKTSIML--- 270 (334)
Q Consensus 222 v~~H----nlETv~~l~~~-------Vr~r---~~t--------------ye~sL~vL~~ak~~~p~Gl~tkTgiMV--- 270 (334)
++|- +.+..-.+-.. |+.+ ..+ .+...+.++.+.+. |+. .||+
T Consensus 126 iINdVsg~~d~~m~~v~a~~~~~vVlmh~~eG~p~tm~~~~~y~dv~~ev~~~l~~~i~~a~~~---Gi~---~IilDPG 199 (294)
T 2dqw_A 126 LLNDVTGLRDERMVALAARHGVAAVVMHMPVPDPATMMAHARYRDVVAEVKAFLEAQARRALSA---GVP---QVVLDPG 199 (294)
T ss_dssp EEECSSCSCCHHHHHHHHHHTCEEEEECCSSSCTTTGGGGCCCSSHHHHHHHHHHHHHHHHHHT---TCS---CEEEECC
T ss_pred EEEECCCCCChHHHHHHHHhCCCEEEEcCCCCCCccccccCccccHHHHHHHHHHHHHHHHHHC---CCC---cEEEcCC
Confidence 6554 22211111000 1101 011 22334555566554 543 4443
Q ss_pred -ecCCCHHHHHHHHHHHHHc
Q 019890 271 -GCGETPDQVVSTMEKVRAA 289 (334)
Q Consensus 271 -GlGETdEE~~etl~~Lre~ 289 (334)
|||.|.++-.++|+.|+++
T Consensus 200 ~Gf~kt~~~n~~ll~~l~~~ 219 (294)
T 2dqw_A 200 FGFGKLLEHNLALLRRLDEI 219 (294)
T ss_dssp TTSSCCHHHHHHHHHTHHHH
T ss_pred CCcccCHHHHHHHHHHHHHH
Confidence 8999999888888887665
No 82
>3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc genomics, center for structural genomics of infectious DISE csgid; 2.05A {Francisella tularensis subsp}
Probab=58.17 E-value=9.1 Score=35.03 Aligned_cols=135 Identities=15% Similarity=0.262 Sum_probs=74.0
Q ss_pred CCCchhHHHHHHHHHHCCCcEEEEeeecC---CCCCCchHHHHHHHHHHHHhhCCCCceee--e----------eccccc
Q 019890 156 PPDPDEPTNVAEAIASWGLDYVVITSVDR---DDLADQGSGHFAQTVRKLKELKPNMLIEA--L----------VAKSGL 220 (334)
Q Consensus 156 ~ld~~Ep~~~A~av~~~GlkeVVLTSv~r---dDl~d~Ga~~fa~lIr~Ik~~~P~i~vE~--L----------l~~ag~ 220 (334)
..|...+.+..+.+.+.|.+.+.+==.|. ..+. .| ..+|++|++..|+..+.+ . +.++|.
T Consensus 36 saD~~~L~~~i~~l~~~G~d~lHvDVmDg~FVpnit-~G----~~~v~~lr~~~p~~~ldvHLmv~~p~~~i~~~~~aGA 110 (246)
T 3inp_A 36 SADLARLGDDVKAVLAAGADNIHFDVMDNHYVPNLT-FG----PMVLKALRDYGITAGMDVHLMVKPVDALIESFAKAGA 110 (246)
T ss_dssp GSCGGGHHHHHHHHHHTTCCCEEEEEEBSSSSSCBC-CC----HHHHHHHHHHTCCSCEEEEEECSSCHHHHHHHHHHTC
T ss_pred cCChhhHHHHHHHHHHcCCCEEEEEecCCCcCcchh-cC----HHHHHHHHHhCCCCeEEEEEeeCCHHHHHHHHHHcCC
Confidence 46788899999999999998665522221 1121 23 378888888776643333 2 556676
Q ss_pred cccccchhh---HHHHHHhhcC----------------------------------CCC---C-HHHHHHHHHHHHHhCC
Q 019890 221 NVFAHNIET---VEELQSAVRD----------------------------------HRA---N-FKQSLDVLMMAKDYVP 259 (334)
Q Consensus 221 dv~~HnlET---v~~l~~~Vr~----------------------------------r~~---t-ye~sL~vL~~ak~~~p 259 (334)
|.+.-..|+ ..+..+.++. ++. + -.+.++.++++|+..+
T Consensus 111 d~itvH~Ea~~~~~~~i~~ir~~G~k~Gvalnp~Tp~e~l~~~l~~vD~VlvMsV~PGfgGQ~fi~~~l~KI~~lr~~~~ 190 (246)
T 3inp_A 111 TSIVFHPEASEHIDRSLQLIKSFGIQAGLALNPATGIDCLKYVESNIDRVLIMSVNPGFGGQKFIPAMLDKAKEISKWIS 190 (246)
T ss_dssp SEEEECGGGCSCHHHHHHHHHTTTSEEEEEECTTCCSGGGTTTGGGCSEEEEECSCTTC--CCCCTTHHHHHHHHHHHHH
T ss_pred CEEEEccccchhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHhcCCEEEEeeecCCCCCcccchHHHHHHHHHHHHHH
Confidence 665544442 1222222221 111 1 1344566666665432
Q ss_pred CcceEeeceEEecCCCHHHHHHHHHHHHHcCCcEEeeccCc
Q 019890 260 AGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYM 300 (334)
Q Consensus 260 ~Gl~tkTgiMVGlGETdEE~~etl~~Lre~gvd~vtigqYl 300 (334)
+ .-....|-|.-|=+. +++..+.++|.|.+-+|.++
T Consensus 191 ~-~~~~~~I~VDGGI~~----~ti~~~~~aGAD~~V~GSaI 226 (246)
T 3inp_A 191 S-TDRDILLEIDGGVNP----YNIAEIAVCGVNAFVAGSAI 226 (246)
T ss_dssp H-HTSCCEEEEESSCCT----TTHHHHHTTTCCEEEESHHH
T ss_pred h-cCCCeeEEEECCcCH----HHHHHHHHcCCCEEEEehHH
Confidence 1 001123445555553 25677888899988888654
No 83
>1pv8_A Delta-aminolevulinic acid dehydratase; porphobilinogen synthase, tetrapyrrole biosynthesis, reactio intermediate, lyase; HET: PB1; 2.20A {Homo sapiens} SCOP: c.1.10.3 PDB: 1e51_A* 2z0i_A 2z1b_A
Probab=58.14 E-value=11 Score=36.19 Aligned_cols=125 Identities=21% Similarity=0.227 Sum_probs=70.3
Q ss_pred CCCCchhHHHHHHHHHHCCCcEEEEeeecCCCCCCc-hH------HHHHHHHHHHHhhCCCCceee---e--ecccccc-
Q 019890 155 PPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQ-GS------GHFAQTVRKLKELKPNMLIEA---L--VAKSGLN- 221 (334)
Q Consensus 155 ~~ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~-Ga------~~fa~lIr~Ik~~~P~i~vE~---L--l~~ag~d- 221 (334)
...+.+.+.+.++.+.++|++-|.|=|+......|. |. .-+.+.|++||+.+|++.|=. | ..+-|=+
T Consensus 54 ~r~sid~l~~~~~~~~~~Gi~~v~LFgvp~~~~Kd~~gs~A~~~~g~v~~air~iK~~~pdl~vitDvcLc~YT~HGHcG 133 (330)
T 1pv8_A 54 ARYGVKRLEEMLRPLVEEGLRCVLIFGVPSRVPKDERGSAADSEESPAIEAIHLLRKTFPNLLVACDVCLCPYTSHGHCG 133 (330)
T ss_dssp EEECHHHHHHHHHHHHHHTCCEEEEEECC--------------CCSHHHHHHHHHHHHSTTSEEEEEECCC---------
T ss_pred eeecHHHHHHHHHHHHHCCCCEEEEecCCcccCCCccccccCCCCChHHHHHHHHHHHCCCeEEEEeeecccccCCCcee
Confidence 357899999999999999999999999842211221 21 246789999999999954411 1 1111111
Q ss_pred -----ccccchhhHHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCcceEeeceEEecCCCHHHHHHHHHHHHHcCCcE-Ee
Q 019890 222 -----VFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDV-MT 295 (334)
Q Consensus 222 -----v~~HnlETv~~l~~~Vr~r~~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGlGETdEE~~etl~~Lre~gvd~-vt 295 (334)
-.-.|-+|++.|-+. -+.+|+. --+ ++--|++|=|- +...=+-|.+.|+.. +.
T Consensus 134 il~~~g~v~ND~Tl~~La~~-------------Als~A~A-GAd-iVAPSdMMDGr------V~aIR~aLd~~G~~~~v~ 192 (330)
T 1pv8_A 134 LLSENGAFRAEESRQRLAEV-------------ALAYAKA-GCQ-VVAPSDMMDGR------VEAIKEALMAHGLGNRVS 192 (330)
T ss_dssp ------CHHHHHHHHHHHHH-------------HHHHHHH-TCS-EEEECC--CCH------HHHHHHHHHHTTCTTTCE
T ss_pred EECCCCcCccHHHHHHHHHH-------------HHHHHHc-CCC-eeecccccccH------HHHHHHHHHhCCCcCCce
Confidence 011234454444321 1233443 123 56678888774 333444577888877 88
Q ss_pred eccCc
Q 019890 296 FGQYM 300 (334)
Q Consensus 296 igqYl 300 (334)
|-.|.
T Consensus 193 ImsYs 197 (330)
T 1pv8_A 193 VMSYS 197 (330)
T ss_dssp EBCCC
T ss_pred Eeehh
Confidence 87774
No 84
>1xi3_A Thiamine phosphate pyrophosphorylase; structural genomics, southeast collaboratory for structural genomics, hyperthermophIle; 1.70A {Pyrococcus furiosus} SCOP: c.1.3.1
Probab=56.87 E-value=60 Score=27.36 Aligned_cols=39 Identities=8% Similarity=0.107 Sum_probs=26.2
Q ss_pred hHHHHHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhh
Q 019890 161 EPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKEL 205 (334)
Q Consensus 161 Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~ 205 (334)
++.+.++++.+.|++.|.|+- ++.....+.+.++.|++.
T Consensus 27 ~~~~~~~~~~~~G~~~i~l~~------~~~~~~~~~~~~~~l~~~ 65 (215)
T 1xi3_A 27 PEVESVREALEGGATAIQMRI------KNAPTREMYEIGKTLRQL 65 (215)
T ss_dssp CHHHHHHHHHHTTCSEEEECC------CSCCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHCCCCEEEECC------CCCCHHHHHHHHHHHHHH
Confidence 778889999999999987752 222234455666666543
No 85
>2ojp_A DHDPS, dihydrodipicolinate synthase; dimer, lysine biosynthe lyase; HET: KGC GOL; 1.70A {Escherichia coli} PDB: 1yxc_A 1dhp_A 1yxd_A* 2ats_A* 3du0_A* 3c0j_A* 3ubs_A* 4eou_A* 3i7q_A* 3i7r_A* 3i7s_A* 2pur_A* 1s5v_A 1s5w_A 1s5t_A 3den_A* 2a6l_A 2a6n_A 3g0s_A
Probab=56.85 E-value=30 Score=31.81 Aligned_cols=51 Identities=20% Similarity=0.365 Sum_probs=38.7
Q ss_pred CCHHHHHHHHHHHHHhCCCcceEeeceEEecC-CCHHHHHHHHHHHHHcCCcEEee
Q 019890 242 ANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCG-ETPDQVVSTMEKVRAAGVDVMTF 296 (334)
Q Consensus 242 ~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGlG-ETdEE~~etl~~Lre~gvd~vti 296 (334)
-+.+++.++++.+.+...+ +.-+|+|.| .+-+|.++..+..+++|+|-+-+
T Consensus 51 Ls~~Er~~v~~~~~~~~~g----r~pviaGvg~~~t~~ai~la~~a~~~Gadavlv 102 (292)
T 2ojp_A 51 LNHDEHADVVMMTLDLADG----RIPVIAGTGANATAEAISLTQRFNDSGIVGCLT 102 (292)
T ss_dssp SCHHHHHHHHHHHHHHHTT----SSCEEEECCCSSHHHHHHHHHHTTTSSCSEEEE
T ss_pred CCHHHHHHHHHHHHHHhCC----CCcEEEecCCccHHHHHHHHHHHHhcCCCEEEE
Confidence 4567788888888775432 345899994 57888999999999999996544
No 86
>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 4hnu_A* 4hnt_A* 4hnv_A* 3hb9_A*
Probab=56.46 E-value=63 Score=35.77 Aligned_cols=136 Identities=15% Similarity=0.122 Sum_probs=81.2
Q ss_pred CCCchhHHHHHHHHHHC--CCcEEEEeeecCCCCCCchHH----HHHHHHHHHHhhCCCCceeeeeccccccccccchh-
Q 019890 156 PPDPDEPTNVAEAIASW--GLDYVVITSVDRDDLADQGSG----HFAQTVRKLKELKPNMLIEALVAKSGLNVFAHNIE- 228 (334)
Q Consensus 156 ~ld~~Ep~~~A~av~~~--GlkeVVLTSv~rdDl~d~Ga~----~fa~lIr~Ik~~~P~i~vE~Ll~~ag~dv~~HnlE- 228 (334)
.++.++...+|+++.+. |+.++-..|++.- +-+.. .=.+.++.|++..|++.+..++.....--|.|.-+
T Consensus 551 r~~~~~kl~ia~~L~~~~~G~~~lE~~Gga~~---e~~~~~~~e~~~e~l~~l~~~~~~~~~~~l~R~~n~vgy~~~pd~ 627 (1150)
T 3hbl_A 551 RVRTKDMINIASKTADVFKDGFSLEMWGGATF---DVAYNFLKENPWERLERLRKAIPNVLFQMLLRASNAVGYKNYPDN 627 (1150)
T ss_dssp CCCHHHHHHHHHHHHHHTTTCSEEEEEETTHH---HHHHHTSCCCHHHHHHHHHHHCCSSEEEEEEETTTBTCSSCCCHH
T ss_pred CCCHHHHHHHHHHHHHhhCCCcEEeecCCceE---EecccccCCCHHHHHHHHHHhCCCCeEEEEeccccccccccCCch
Confidence 37899999999999998 9999988887531 11110 11367788888888877766643322222222211
Q ss_pred ----hHHHHHHh----hc--CCCCCHHHHHHHHHHHHHhCCCcceEeeceEEe---c-C-----CCHHHHHHHHHHHHHc
Q 019890 229 ----TVEELQSA----VR--DHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLG---C-G-----ETPDQVVSTMEKVRAA 289 (334)
Q Consensus 229 ----Tv~~l~~~----Vr--~r~~tye~sL~vL~~ak~~~p~Gl~tkTgiMVG---l-G-----ETdEE~~etl~~Lre~ 289 (334)
.+++.... +| +...........++.+++. |..+...++.- + . -+.+.+.+.++.+.++
T Consensus 628 v~~~~v~~a~~~Gvd~irif~~~sd~~~~~~~~~~~~e~---g~~~~~~i~~~~~~~~pe~~~~~~~~~~~~~a~~~~~~ 704 (1150)
T 3hbl_A 628 VIHKFVQESAKAGIDVFRIFDSLNWVDQMKVANEAVQEA---GKISEGTICYTGDILNPERSNIYTLEYYVKLAKELERE 704 (1150)
T ss_dssp HHHHHHHHHHHTTCCEEEEECTTCCGGGGHHHHHHHHHT---TCEEEEEEECCSCTTCTTTCSSSSHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHhCCcCEEEEEeeCCHHHHHHHHHHHHHHH---hhheeEEEeecccccChhhcCCCCHHHHHHHHHHHHHc
Confidence 12221111 11 1233444455666677765 44444443333 3 1 3467789999999999
Q ss_pred CCcEEeec
Q 019890 290 GVDVMTFG 297 (334)
Q Consensus 290 gvd~vtig 297 (334)
|++.+.|.
T Consensus 705 Ga~~i~l~ 712 (1150)
T 3hbl_A 705 GFHILAIK 712 (1150)
T ss_dssp TCSEEEEE
T ss_pred CCCeeeEc
Confidence 99998875
No 87
>1xg4_A Probable methylisocitrate lyase; 2-methylisocitrate lyase/inhibitor complex, isocitrate lyase superfamily; HET: ICT; 1.60A {Escherichia coli} PDB: 1xg3_A* 1mum_A 1oqf_A 1ujq_A 1o5q_A
Probab=56.13 E-value=68 Score=29.93 Aligned_cols=77 Identities=16% Similarity=0.160 Sum_probs=61.4
Q ss_pred CCCHHHHHHHHHHHHHhCCCcceEeeceEEecCCCHHHHHHHHHHHHHcCCcEEeec-cCcCCCCCCCcccccCCHHHHH
Q 019890 241 RANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFG-QYMRPSKRHMPVSEYITPEAFE 319 (334)
Q Consensus 241 ~~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGlGETdEE~~etl~~Lre~gvd~vtig-qYlrP~~~h~~v~~yv~P~~f~ 319 (334)
..++++.+..++.+.+..+ +.+-.++=.|||.+.+++.++.+.+.+.|++-|+|- |-..|...|++=...++.+++.
T Consensus 60 ~vt~~em~~~~~~I~~~~~--~PviaD~d~Gyg~~~~~~~~~v~~l~~aGa~gv~iEd~~~~k~cgH~~gk~L~p~~~~~ 137 (295)
T 1xg4_A 60 ISTLDDVLTDIRRITDVCS--LPLLVDADIGFGSSAFNVARTVKSMIKAGAAGLHIEDQVGAKRSGHRPNKAIVSKEEMV 137 (295)
T ss_dssp CSCHHHHHHHHHHHHHHCC--SCEEEECTTCSSSSHHHHHHHHHHHHHHTCSEEEEECBCSSCCCTTSSSCCBCCHHHHH
T ss_pred CCCHHHHHHHHHHHHhhCC--CCEEecCCcccCCCHHHHHHHHHHHHHcCCeEEEECCCCCCcccCCCCCCccCCHHHHH
Confidence 3678888888888887654 357777777899999999999999999999999994 4445666788877778877663
No 88
>2cw6_A Hydroxymethylglutaryl-COA lyase, mitochondrial; HMG-COA lyase, ketogenic enzyme; HET: 3HG; 2.10A {Homo sapiens} PDB: 3mp3_A* 3mp4_A 3mp5_A*
Probab=55.43 E-value=21 Score=32.89 Aligned_cols=50 Identities=14% Similarity=0.173 Sum_probs=38.5
Q ss_pred CCCchhHHHHHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhCCCC
Q 019890 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNM 209 (334)
Q Consensus 156 ~ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~P~i 209 (334)
..+++++.+.++++.++|.+.|.|- | ...-.-...+.++|+.|++..|++
T Consensus 152 ~~~~~~~~~~~~~~~~~Ga~~i~l~--D--T~G~~~P~~~~~lv~~l~~~~~~~ 201 (298)
T 2cw6_A 152 KISPAKVAEVTKKFYSMGCYEISLG--D--TIGVGTPGIMKDMLSAVMQEVPLA 201 (298)
T ss_dssp SCCHHHHHHHHHHHHHTTCSEEEEE--E--TTSCCCHHHHHHHHHHHHHHSCGG
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEec--C--CCCCcCHHHHHHHHHHHHHhCCCC
Confidence 3678999999999999999998884 1 122223577899999999887754
No 89
>3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina}
Probab=54.08 E-value=74 Score=29.16 Aligned_cols=56 Identities=14% Similarity=0.099 Sum_probs=37.7
Q ss_pred HhhcCCCCCHHHHHHHHHHHHHhCCCcceEeeceEEecCCCHH----HHHHHHHHHHHcCCcEEeec
Q 019890 235 SAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPD----QVVSTMEKVRAAGVDVMTFG 297 (334)
Q Consensus 235 ~~Vr~r~~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGlGETdE----E~~etl~~Lre~gvd~vtig 297 (334)
+.+. .+-+.++.++.++.+|+..++ +. ++.||.-.- -+.+.++.+.++|+|.+-+.
T Consensus 71 ~AL~-~G~~~~~~~~~v~~ir~~~~~-~P-----ivlm~Y~npv~~~g~e~f~~~~~~aGvdgvii~ 130 (267)
T 3vnd_A 71 RSLA-AGTTSSDCFDIITKVRAQHPD-MP-----IGLLLYANLVFANGIDEFYTKAQAAGVDSVLIA 130 (267)
T ss_dssp HHHH-TTCCHHHHHHHHHHHHHHCTT-CC-----EEEEECHHHHHHHCHHHHHHHHHHHTCCEEEET
T ss_pred HHHH-cCCCHHHHHHHHHHHHhcCCC-CC-----EEEEecCcHHHHhhHHHHHHHHHHcCCCEEEeC
Confidence 3344 478899999999999986333 22 333444221 13667888899999998884
No 90
>3apt_A Methylenetetrahydrofolate reductase; TIM barrel, oxidoreductase, flavin; HET: FAD; 1.85A {Thermus thermophilus} PDB: 3apy_A* 1v93_A*
Probab=53.91 E-value=63 Score=30.18 Aligned_cols=120 Identities=13% Similarity=0.138 Sum_probs=66.4
Q ss_pred CCchhHHHHHHHHHHCCCcEEEEeeecCC-------CCCCchHHHHHHHHHHHHhhCCC-Cceeeeeccccccccccchh
Q 019890 157 PDPDEPTNVAEAIASWGLDYVVITSVDRD-------DLADQGSGHFAQTVRKLKELKPN-MLIEALVAKSGLNVFAHNIE 228 (334)
Q Consensus 157 ld~~Ep~~~A~av~~~GlkeVVLTSv~rd-------Dl~d~Ga~~fa~lIr~Ik~~~P~-i~vE~Ll~~ag~dv~~HnlE 228 (334)
.+.+++.+....+.+.|++.|+...+|.. +.++ |..+-.++|+.|++..++ +.|.+ -.|+
T Consensus 83 ~~~~~l~~~L~~~~~~GI~niLaLrGD~p~~~g~~~~~~~-~f~~a~~Lv~~ir~~~g~~f~igv-------A~yP---- 150 (310)
T 3apt_A 83 QSRKEVAEVLHRFVESGVENLLALRGDPPRGERVFRPHPE-GFRYAAELVALIRERYGDRVSVGG-------AAYP---- 150 (310)
T ss_dssp SCHHHHHHHHHHHHHTTCCEEEEECCCCSTTCCSCCCCTT-SCSSHHHHHHHHHHHHGGGSEEEE-------EECT----
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEEcCCCCCCCCCCCCCCC-CCCCHHHHHHHHHHhCCCCeEEEE-------EeCC----
Confidence 67889999999999999999987777742 2222 234556888888876332 22211 1111
Q ss_pred hHHHHHHhhcCCCCCHHHHHHHHH-HHHHhCCCcceEeeceEEecCCCHHHHHHHHHHHHHcCCcEEeeccCcCCC
Q 019890 229 TVEELQSAVRDHRANFKQSLDVLM-MAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRPS 303 (334)
Q Consensus 229 Tv~~l~~~Vr~r~~tye~sL~vL~-~ak~~~p~Gl~tkTgiMVGlGETdEE~~etl~~Lre~gvd~vtigqYlrP~ 303 (334)
..++...+.+.-++.|+ ++.. |. ..+|.=+.=..+.+.+.++.+++.|++ ++|-..+-|.
T Consensus 151 -------E~Hp~~~~~~~d~~~Lk~Kv~a----GA---df~iTQ~ffD~~~~~~f~~~~r~~Gi~-vPIi~GImPi 211 (310)
T 3apt_A 151 -------EGHPESESLEADLRHFKAKVEA----GL---DFAITQLFFNNAHYFGFLERARRAGIG-IPILPGIMPV 211 (310)
T ss_dssp -------TCCTTSSCHHHHHHHHHHHHHH----HC---SEEEECCCSCHHHHHHHHHHHHHTTCC-SCEECEECCC
T ss_pred -------CcCCCCCCHHHHHHHHHHHHHc----CC---CEEEecccCCHHHHHHHHHHHHHcCCC-CeEEEEeccc
Confidence 11111123332232222 2211 21 123333466777788888888888876 5565555444
No 91
>3qfe_A Putative dihydrodipicolinate synthase family PROT; seattle structural genomics center for infectious disease, S coccidioides, valley fever; 2.35A {Coccidioides immitis}
Probab=53.85 E-value=52 Score=30.77 Aligned_cols=51 Identities=18% Similarity=0.290 Sum_probs=36.2
Q ss_pred CCHHHHHHHHHHHHHhCCCcceEeeceEEec-CCCHHHHHHHHHHHHHcCCcEEee
Q 019890 242 ANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC-GETPDQVVSTMEKVRAAGVDVMTF 296 (334)
Q Consensus 242 ~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGl-GETdEE~~etl~~Lre~gvd~vti 296 (334)
-+.+++.++++.+.+...+ +.-+|+|. +.+-+|.++..+..+++|+|-+-+
T Consensus 61 Ls~~Er~~v~~~~~~~~~g----rvpviaGvg~~~t~~ai~la~~a~~~Gadavlv 112 (318)
T 3qfe_A 61 LTREERAQLIATARKAVGP----DFPIMAGVGAHSTRQVLEHINDASVAGANYVLV 112 (318)
T ss_dssp SCHHHHHHHHHHHHHHHCT----TSCEEEECCCSSHHHHHHHHHHHHHHTCSEEEE
T ss_pred CCHHHHHHHHHHHHHHhCC----CCcEEEeCCCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 4567777777777775332 34578888 468888888888888888885544
No 92
>3e49_A Uncharacterized protein DUF849 with A TIM barrel; structural genomics, joint center for structural genomics; HET: MSE; 1.75A {Burkholderia xenovorans LB400}
Probab=53.54 E-value=13 Score=35.24 Aligned_cols=54 Identities=22% Similarity=0.293 Sum_probs=42.9
Q ss_pred CCCCchhHHHHHHHHHHCCCcEEEEeeecC-CCCCCchHHHHHHHHHHHHhhCCC
Q 019890 155 PPPDPDEPTNVAEAIASWGLDYVVITSVDR-DDLADQGSGHFAQTVRKLKELKPN 208 (334)
Q Consensus 155 ~~ld~~Ep~~~A~av~~~GlkeVVLTSv~r-dDl~d~Ga~~fa~lIr~Ik~~~P~ 208 (334)
.|+.++|+.+.|.+..+.|..-|.|=-.|. |.-+....+.|+++++.|++..|.
T Consensus 27 lPvTpeEia~~A~~~~~AGAaivHlHvRdp~dG~ps~d~~~~~e~~~~IR~~~d~ 81 (311)
T 3e49_A 27 LPVTPDEVAQASIGAAEAGAAVIHLHARDPRDGRPTQDPAAFAEFLPRIKSNTDA 81 (311)
T ss_dssp SCCSHHHHHHHHHHHHHHTCSEEEECEECTTTCCEECCHHHHTTHHHHHHHHCCC
T ss_pred CCCCHHHHHHHHHHHHHcCCcEEEEeecCCCCCCcCCCHHHHHHHHHHHHHhCCc
Confidence 478999999999999999998888866652 223444578999999999997653
No 93
>3h5d_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, schiff base, cytoplasm, diaminopimelate biosy lyase; HET: MES; 1.99A {Streptococcus pneumoniae}
Probab=52.28 E-value=85 Score=29.15 Aligned_cols=52 Identities=12% Similarity=0.212 Sum_probs=40.1
Q ss_pred CCHHHHHHHHHHHHHhCCCcceEeeceEEecC-CCHHHHHHHHHHHHHcCC-cEEeec
Q 019890 242 ANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCG-ETPDQVVSTMEKVRAAGV-DVMTFG 297 (334)
Q Consensus 242 ~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGlG-ETdEE~~etl~~Lre~gv-d~vtig 297 (334)
-+.+++.++++.+.+...+ +.-+|+|.| .+-+|.++..+..+++|. |-+-+-
T Consensus 57 Ls~~Er~~v~~~~~~~~~g----rvpViaGvg~~~t~~ai~la~~A~~~Ga~davlv~ 110 (311)
T 3h5d_A 57 LTHDEELELFAAVQKVVNG----RVPLIAGVGTNDTRDSIEFVKEVAEFGGFAAGLAI 110 (311)
T ss_dssp SCHHHHHHHHHHHHHHSCS----SSCEEEECCCSSHHHHHHHHHHHHHSCCCSEEEEE
T ss_pred CCHHHHHHHHHHHHHHhCC----CCcEEEeCCCcCHHHHHHHHHHHHhcCCCcEEEEc
Confidence 4578888889888886543 466899994 588899999999999986 855443
No 94
>3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0
Probab=51.96 E-value=56 Score=27.73 Aligned_cols=112 Identities=18% Similarity=0.282 Sum_probs=62.0
Q ss_pred HHHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhCCCCceeee-----------eccccccccccchhhHHH
Q 019890 164 NVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEAL-----------VAKSGLNVFAHNIETVEE 232 (334)
Q Consensus 164 ~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~P~i~vE~L-----------l~~ag~dv~~HnlETv~~ 232 (334)
..++.+.+.|.+.|++-. .+ +.+++.++++.+++..-.+.++++ +.+.|.|++..+.-..-.
T Consensus 68 ~~~~~~~~~Gad~v~v~~-----~~--~~~~~~~~~~~~~~~g~~~~v~~~~~~t~~~~~~~~~~~g~d~i~v~~g~~g~ 140 (211)
T 3f4w_A 68 FESQLLFDAGADYVTVLG-----VT--DVLTIQSCIRAAKEAGKQVVVDMICVDDLPARVRLLEEAGADMLAVHTGTDQQ 140 (211)
T ss_dssp HHHHHHHHTTCSEEEEET-----TS--CHHHHHHHHHHHHHHTCEEEEECTTCSSHHHHHHHHHHHTCCEEEEECCHHHH
T ss_pred HHHHHHHhcCCCEEEEeC-----CC--ChhHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHcCCCEEEEcCCCccc
Confidence 347778899999988833 22 234667788888765211112211 334445543222100000
Q ss_pred HHHhhcCCCCCHHHHHHHHHHHHHhCCCcceEeeceEEecCCCHHHHHHHHHHHHHcCCcEEeeccCc
Q 019890 233 LQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYM 300 (334)
Q Consensus 233 l~~~Vr~r~~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGlGETdEE~~etl~~Lre~gvd~vtigqYl 300 (334)
. . ... .++.++++++..++ + -++++.|=+.+ .+..+.+.|+|.+-+|..+
T Consensus 141 ~----~-~~~----~~~~i~~l~~~~~~-~----~i~~~gGI~~~----~~~~~~~~Gad~vvvGsai 190 (211)
T 3f4w_A 141 A----A-GRK----PIDDLITMLKVRRK-A----RIAVAGGISSQ----TVKDYALLGPDVVIVGSAI 190 (211)
T ss_dssp H----T-TCC----SHHHHHHHHHHCSS-C----EEEEESSCCTT----THHHHHTTCCSEEEECHHH
T ss_pred c----c-CCC----CHHHHHHHHHHcCC-C----cEEEECCCCHH----HHHHHHHcCCCEEEECHHH
Confidence 0 0 001 36777888876554 3 34566666543 5566678999999999664
No 95
>3fa4_A 2,3-dimethylmalate lyase; alpha/beta barrel, helix swapping; 2.18A {Aspergillus niger} PDB: 3fa3_A
Probab=51.08 E-value=54 Score=30.89 Aligned_cols=78 Identities=15% Similarity=0.204 Sum_probs=57.3
Q ss_pred CCHHHHHHHHHHHHHhCCCcceEeeceEEecCCCHHHHHHHHHHHHHcCCcEEeeccCcCCC-CCCCcccccCCHHHHHH
Q 019890 242 ANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRPS-KRHMPVSEYITPEAFER 320 (334)
Q Consensus 242 ~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGlGETdEE~~etl~~Lre~gvd~vtigqYlrP~-~~h~~v~~yv~P~~f~~ 320 (334)
.++++-+..++.+.+..++ +.+-.++=.|+|. .+++.++.+.+.+.|+.-|+|=--..|. ..|++-...++.++|..
T Consensus 62 vt~~em~~~~~~I~~~~~~-~PviaD~d~Gyg~-~~~v~~tv~~l~~aGaagv~iEDq~~~Krcgh~~gk~l~~~~e~~~ 139 (302)
T 3fa4_A 62 CTLNDMRANAEMISNISPS-TPVIADADTGYGG-PIMVARTTEQYSRSGVAAFHIEDQVQTKRCGHLAGKILVDTDTYVT 139 (302)
T ss_dssp CCHHHHHHHHHHHHTTSTT-SCEEEECTTTTSS-HHHHHHHHHHHHHTTCCEEEECSBCCC-------CCCBCCHHHHHH
T ss_pred CCHHHHHHHHHHHHhhccC-CCEEEECCCCCCC-HHHHHHHHHHHHHcCCcEEEECCCCCCcccCCCCCCeecCHHHHHH
Confidence 5677778777777765555 6777888889985 7889999999999999999997555453 35888888999988754
Q ss_pred H
Q 019890 321 Y 321 (334)
Q Consensus 321 ~ 321 (334)
-
T Consensus 140 r 140 (302)
T 3fa4_A 140 R 140 (302)
T ss_dssp H
T ss_pred H
Confidence 3
No 96
>4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B*
Probab=51.02 E-value=22 Score=36.40 Aligned_cols=57 Identities=21% Similarity=0.269 Sum_probs=42.1
Q ss_pred hHHHHHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhCCCCceee---e-------ecccccccc
Q 019890 161 EPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEA---L-------VAKSGLNVF 223 (334)
Q Consensus 161 Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~P~i~vE~---L-------l~~ag~dv~ 223 (334)
+-.+.++++.+.|++.|||-+ ..+-..++.+.|+.||+.+|++.|=+ . |.++|.|.+
T Consensus 281 d~~eR~~aLv~AGvD~iviD~------ahGhs~~v~~~i~~ik~~~p~~~viaGNVaT~e~a~~Li~aGAD~v 347 (556)
T 4af0_A 281 GDKDRLKLLAEAGLDVVVLDS------SQGNSVYQIEFIKWIKQTYPKIDVIAGNVVTREQAAQLIAAGADGL 347 (556)
T ss_dssp HHHHHHHHHHHTTCCEEEECC------SCCCSHHHHHHHHHHHHHCTTSEEEEEEECSHHHHHHHHHHTCSEE
T ss_pred cHHHHHHHHHhcCCcEEEEec------cccccHHHHHHHHHHHhhCCcceEEeccccCHHHHHHHHHcCCCEE
Confidence 456778899999999999943 33445788999999999998754311 0 677777754
No 97
>1l6s_A Porphobilinogen synthase; dehydratase, lyase; HET: CME DSB; 1.70A {Escherichia coli} SCOP: c.1.10.3 PDB: 1i8j_A* 1l6y_A* 1b4e_A
Probab=50.82 E-value=18 Score=34.64 Aligned_cols=119 Identities=23% Similarity=0.243 Sum_probs=76.8
Q ss_pred CCCchhHHHHHHHHHHCCCcEEEEeeecCCCCCCc-hH------HHHHHHHHHHHhhCCCCcee--e-e----------e
Q 019890 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQ-GS------GHFAQTVRKLKELKPNMLIE--A-L----------V 215 (334)
Q Consensus 156 ~ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~-Ga------~~fa~lIr~Ik~~~P~i~vE--~-L----------l 215 (334)
..+.+.+.++++.+.++|++-|.|=|+.. ..|. |. .-+.+.|++||+.+|++.|= + | +
T Consensus 54 r~sid~l~~~~~~~~~lGi~~v~LFgvp~--~Kd~~gs~A~~~~g~v~rair~iK~~~pdl~vitDvcLc~YT~HGHcGi 131 (323)
T 1l6s_A 54 RIPEKHLAREIERIANAGIRSVMTFGISH--HTDETGSDAWREDGLVARMSRICKQTVPEMIVMSDTCFCEYTSHGHCGV 131 (323)
T ss_dssp EEEGGGHHHHHHHHHHHTCCEEEEEEECS--SCBSSCGGGGSTTSHHHHHHHHHHHHCTTSEEEEEECSTTTBSSCCSSC
T ss_pred eeCHHHHHHHHHHHHHCCCCEEEEeCCCC--CCCccccccCCCCCcHHHHHHHHHHHCCCeEEEEeeeccccCCCCceEe
Confidence 46789999999999999999999988842 1221 11 25678999999999996441 1 1 2
Q ss_pred ccccccccccchhhHHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCcceEeeceEEecCCCHHHHHHHHHHHHHcCCcEEe
Q 019890 216 AKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMT 295 (334)
Q Consensus 216 ~~ag~dv~~HnlETv~~l~~~Vr~r~~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGlGETdEE~~etl~~Lre~gvd~vt 295 (334)
.+.| .-.|-+|++.|-+. -+.+|+. --+ ++--|++|=|- +...=+-|.+.|+..+.
T Consensus 132 l~~g---~V~ND~Tl~~Lak~-------------Als~A~A-GAd-iVAPSdMMDGr------V~aIR~aLd~~G~~~v~ 187 (323)
T 1l6s_A 132 LCEH---GVDNDATLENLGKQ-------------AVVAAAA-GAD-FIAPSAAMDGQ------VQAIRQALDAAGFKDTA 187 (323)
T ss_dssp BCSS---SBCHHHHHHHHHHH-------------HHHHHHH-TCS-EEEECSCCTTH------HHHHHHHHHHTTCTTCE
T ss_pred ccCC---cCccHHHHHHHHHH-------------HHHHHHc-CCC-eEecccccccH------HHHHHHHHHhCCCCCce
Confidence 2211 12255566655322 2234443 123 56678888664 44444568889998888
Q ss_pred eccCc
Q 019890 296 FGQYM 300 (334)
Q Consensus 296 igqYl 300 (334)
|-.|.
T Consensus 188 ImsYs 192 (323)
T 1l6s_A 188 IMSYS 192 (323)
T ss_dssp EBCCC
T ss_pred eeehh
Confidence 88873
No 98
>3e02_A Uncharacterized protein DUF849; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.90A {Burkholderia xenovorans LB400}
Probab=50.64 E-value=13 Score=35.24 Aligned_cols=54 Identities=22% Similarity=0.250 Sum_probs=42.9
Q ss_pred CCCCchhHHHHHHHHHHCCCcEEEEeeecC-CCCCCchHHHHHHHHHHHHhhCCC
Q 019890 155 PPPDPDEPTNVAEAIASWGLDYVVITSVDR-DDLADQGSGHFAQTVRKLKELKPN 208 (334)
Q Consensus 155 ~~ld~~Ep~~~A~av~~~GlkeVVLTSv~r-dDl~d~Ga~~fa~lIr~Ik~~~P~ 208 (334)
.|+.++|+.+.|.+..+.|..-|.|=-.|. |.-+....+.|+++++.|++..|.
T Consensus 27 lPvTpeEia~~A~~~~~AGAaivHlHvRdp~dG~ps~d~~~~~e~~~~IR~~~d~ 81 (311)
T 3e02_A 27 LPITPEEIVKEGVAAAEAGAAMLHLHARDPLNGRPSQDPDLFMRFLPQLKERTDA 81 (311)
T ss_dssp SCCSHHHHHHHHHHHHHHTCSEEEECEECTTTCCEECCHHHHTTTHHHHHHHCCC
T ss_pred CCCCHHHHHHHHHHHHHcCCcEEEEeecCCCCCCcCCCHHHHHHHHHHHHHhCCc
Confidence 478999999999999999998888866652 223444578999999999987653
No 99
>3a5f_A Dihydrodipicolinate synthase; TIM barrel, enzyme, amino-acid biosynthesis, cytoplasm, diaminopimelate biosynthesis, lyase; HET: KPI; 1.19A {Clostridium botulinum A} PDB: 3bi8_A* 3ird_A*
Probab=50.49 E-value=39 Score=31.07 Aligned_cols=58 Identities=12% Similarity=0.229 Sum_probs=43.4
Q ss_pred CCHHHHHHHHHHHHHhCCCcceEeeceEEec-CCCHHHHHHHHHHHHHcCCcEEee-cc-CcCCC
Q 019890 242 ANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC-GETPDQVVSTMEKVRAAGVDVMTF-GQ-YMRPS 303 (334)
Q Consensus 242 ~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGl-GETdEE~~etl~~Lre~gvd~vti-gq-YlrP~ 303 (334)
-+.+++.++++.+.+...+ +.-+|+|. +.+-+|.++..+..+++|+|-+-+ .+ |.+|+
T Consensus 51 Ls~~Er~~v~~~~~~~~~g----r~pvi~Gvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~s 111 (291)
T 3a5f_A 51 MTETERKETIKFVIDKVNK----RIPVIAGTGSNNTAASIAMSKWAESIGVDGLLVITPYYNKTT 111 (291)
T ss_dssp SCHHHHHHHHHHHHHHHTT----SSCEEEECCCSSHHHHHHHHHHHHHTTCSEEEEECCCSSCCC
T ss_pred CCHHHHHHHHHHHHHHhCC----CCcEEEeCCcccHHHHHHHHHHHHhcCCCEEEEcCCCCCCCC
Confidence 4677888888888876433 34599999 458899999999999999996544 33 34565
No 100
>3fst_A 5,10-methylenetetrahydrofolate reductase; TIM barrel, flavin, amino-acid biosynthesis, FAD, flavoprotein, methionine biosynthesis, NAD; HET: FAD MRY; 1.65A {Escherichia coli k-12} PDB: 3fsu_A* 1zp3_A* 1zpt_A* 1zrq_A* 1zp4_A* 2fmn_A* 2fmo_A* 1b5t_A*
Probab=49.98 E-value=93 Score=29.06 Aligned_cols=49 Identities=22% Similarity=0.172 Sum_probs=33.2
Q ss_pred CCchhHHHHHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhh
Q 019890 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKEL 205 (334)
Q Consensus 157 ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~ 205 (334)
.+.+++......+.+.|++.|+...+|.....+++..+-.++|+.|++.
T Consensus 94 ~~~~~l~~~L~~~~~~GI~nILaLrGDpp~~~~~~~~~A~dLv~~ir~~ 142 (304)
T 3fst_A 94 ATPDELRTIARDYWNNGIRHIVALRGDLPPGSGKPEMYASDLVTLLKEV 142 (304)
T ss_dssp SCHHHHHHHHHHHHHTTCCEEEEECCCCC------CCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEecCCCCCCCCCCCCCHHHHHHHHHHc
Confidence 5678999999999999999998877763211122333446788888775
No 101
>1olt_A Oxygen-independent coproporphyrinogen III oxidase; heme biosynthesis, decarboxylase, radical SAM enzyme, 4Fe- 4 cluster; HET: SAM; 2.07A {Escherichia coli} SCOP: c.1.28.2
Probab=49.88 E-value=1e+02 Score=29.84 Aligned_cols=63 Identities=11% Similarity=0.165 Sum_probs=45.0
Q ss_pred CCCCHHHHHHHHHHHHHhCCCcceEeeceEEec----------CC----CHH----HHHHHHHHHHHcCCcEEeeccCcC
Q 019890 240 HRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC----------GE----TPD----QVVSTMEKVRAAGVDVMTFGQYMR 301 (334)
Q Consensus 240 r~~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGl----------GE----TdE----E~~etl~~Lre~gvd~vtigqYlr 301 (334)
++.+.++..+.++.+.+..|+.+.+-. +... ++ +++ .+..+.+.|.+.|+..+.+..|.+
T Consensus 215 Pget~e~~~~tl~~~~~l~~~~i~~y~--l~~~p~t~~~~~~~~~~~lp~~~~~~~~~~~~~~~L~~~Gy~~yeis~fa~ 292 (457)
T 1olt_A 215 PKQTPESFAFTLKRVAELNPDRLSVFN--YAHLPTIFAAQRKIKDADLPSPQQKLDILQETIAFLTQSGYQFIGMDHFAR 292 (457)
T ss_dssp TTCCHHHHHHHHHHHHHHCCSEEEEEE--CCCCTTTSGGGGGSCGGGSCCHHHHHHHHHHHHHHHHHTTCEEEETTEEEC
T ss_pred CCCCHHHHHHHHHHHHhcCcCEEEeec--CcCCcCchhHhhccccCCCcCHHHHHHHHHHHHHHHHHCCCeEEEechhcC
Confidence 578999999999999999887443321 1111 11 233 355567788999999999999999
Q ss_pred CCC
Q 019890 302 PSK 304 (334)
Q Consensus 302 P~~ 304 (334)
|+.
T Consensus 293 ~~~ 295 (457)
T 1olt_A 293 PDD 295 (457)
T ss_dssp TTS
T ss_pred CCc
Confidence 875
No 102
>3cqj_A L-ribulose-5-phosphate 3-epimerase ULAE; TIM-barrel, isomerase, phosphate-binding motif; 2.04A {Escherichia coli} PDB: 3cqi_A 3cqh_A 3cqk_A
Probab=49.42 E-value=1.1e+02 Score=26.81 Aligned_cols=132 Identities=9% Similarity=0.079 Sum_probs=63.3
Q ss_pred hhHHHHHHHHHHCCCcEEEEeeecC--CCCCCchHHHHHHHHHHHHhhCCCCceeeeeccccccccccchhhHHHHHHhh
Q 019890 160 DEPTNVAEAIASWGLDYVVITSVDR--DDLADQGSGHFAQTVRKLKELKPNMLIEALVAKSGLNVFAHNIETVEELQSAV 237 (334)
Q Consensus 160 ~Ep~~~A~av~~~GlkeVVLTSv~r--dDl~d~Ga~~fa~lIr~Ik~~~P~i~vE~Ll~~ag~dv~~HnlETv~~l~~~V 237 (334)
+...+.++.++++|.+.|++.+... +...+.....+++.++++.+......|.+.+ +.....+..+.+...++...+
T Consensus 108 ~~~~~~i~~A~~lG~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~l~l-En~~~~~~~~~~~~~~l~~~v 186 (295)
T 3cqj_A 108 EIMRKAIQFAQDVGIRVIQLAGYDVYYQEANNETRRRFRDGLKESVEMASRAQVTLAM-EIMDYPLMNSISKALGYAHYL 186 (295)
T ss_dssp HHHHHHHHHHHHHTCCEEEECCCSCSSSCCCHHHHHHHHHHHHHHHHHHHHHTCEEEE-ECCSSGGGCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCEEEECCCCCCcCcCHHHHHHHHHHHHHHHHHHHHHhCCEEEE-eeCCCcccCCHHHHHHHHHhc
Confidence 4566777778889999999876543 1111112233444444443321111111110 000111122233334444444
Q ss_pred cC--------------CCCCHHHHHHHHHHHHHhCCCcceEeec-----eEEecCCCHHHHHHHHHHHHHcCCc-EEee
Q 019890 238 RD--------------HRANFKQSLDVLMMAKDYVPAGTLTKTS-----IMLGCGETPDQVVSTMEKVRAAGVD-VMTF 296 (334)
Q Consensus 238 r~--------------r~~tye~sL~vL~~ak~~~p~Gl~tkTg-----iMVGlGETdEE~~etl~~Lre~gvd-~vti 296 (334)
.+ .+.+. .+.|+.+...... +.++-. --+-+|+-.-++.+.++.|++.|++ .+.+
T Consensus 187 ~~~~vg~~~D~~h~~~~g~d~---~~~l~~~~~~i~~-vHl~D~~~g~~~~~p~G~G~id~~~~~~~L~~~gy~g~i~l 261 (295)
T 3cqj_A 187 NNPWFQLYPDIGNLSAWDNDV---QMELQAGIGHIVA-VHVKDTKPGVFKNVPFGEGVVDFERCFETLKQSGYCGPYLI 261 (295)
T ss_dssp CCTTEEEECBHHHHHSSSCCH---HHHHHHTGGGBCC-EEECEEETTEEEEECTTSSSCCHHHHHHHHHHTTCCSCEEE
T ss_pred CCCCeEEEeccchHhhcCCCH---HHHHHHhccceEE-EEeecCCCCccCCcCCCCCccCHHHHHHHHHHCCCceeEEE
Confidence 21 12333 3444445454444 555421 1233355556789999999999988 4444
No 103
>3lye_A Oxaloacetate acetyl hydrolase; (alpha/beta)8 barrel; 1.30A {Cryphonectria parasitica} PDB: 3m0j_A* 3m0k_A
Probab=49.35 E-value=73 Score=30.00 Aligned_cols=78 Identities=17% Similarity=0.181 Sum_probs=54.3
Q ss_pred CCHHHHHHHHHHHHHhCC-CcceEeeceEEecCCCHHHHHHHHHHHHHcCCcEEeeccCcCC-CCCCCcccccCCHHHHH
Q 019890 242 ANFKQSLDVLMMAKDYVP-AGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRP-SKRHMPVSEYITPEAFE 319 (334)
Q Consensus 242 ~tye~sL~vL~~ak~~~p-~Gl~tkTgiMVGlGETdEE~~etl~~Lre~gvd~vtigqYlrP-~~~h~~v~~yv~P~~f~ 319 (334)
.++++-+..++.+.+..+ + +.+-.|+=.|+|. .+++.++.+.+.+.|+.-|+|=--..| ...|++-...++.++|.
T Consensus 69 vt~~em~~~~~~i~r~~~~~-~PviaD~d~Gyg~-~~~v~~~v~~l~~aGaagv~iEDq~~~k~cgh~~gk~l~~~~e~~ 146 (307)
T 3lye_A 69 AQLHDMRDNADMIANLDPFG-PPLIADMDTGYGG-PIMVARTVEHYIRSGVAGAHLEDQILTKRCGHLSGKKVVSRDEYL 146 (307)
T ss_dssp SCHHHHHHHHHHHHTSSTTS-CCEEEECTTCSSS-HHHHHHHHHHHHHTTCCEEEECCBCCCC--------CBCCHHHHH
T ss_pred CCHHHHHHHHHhhhccCCCC-CcEEEECCCCCCC-HHHHHHHHHHHHHcCCeEEEEcCCCCCcccCCCCCCeecCHHHHH
Confidence 577888888887776544 3 5677777778985 788999999999999999999655544 34588888888888765
Q ss_pred HH
Q 019890 320 RY 321 (334)
Q Consensus 320 ~~ 321 (334)
.-
T Consensus 147 ~r 148 (307)
T 3lye_A 147 VR 148 (307)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 104
>2ftp_A Hydroxymethylglutaryl-COA lyase; structural genomics, PSI, protein structure initiativ midwest center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=48.21 E-value=26 Score=32.35 Aligned_cols=50 Identities=16% Similarity=0.184 Sum_probs=37.9
Q ss_pred CCCchhHHHHHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhCCCC
Q 019890 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNM 209 (334)
Q Consensus 156 ~ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~P~i 209 (334)
..++++..+.++++.+.|.+.|.|--. ..-.-...+.++|++|++..|++
T Consensus 155 ~~~~~~~~~~~~~~~~~G~d~i~l~DT----~G~~~P~~~~~lv~~l~~~~~~~ 204 (302)
T 2ftp_A 155 DVDPRQVAWVARELQQMGCYEVSLGDT----IGVGTAGATRRLIEAVASEVPRE 204 (302)
T ss_dssp CCCHHHHHHHHHHHHHTTCSEEEEEES----SSCCCHHHHHHHHHHHTTTSCGG
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeCC----CCCcCHHHHHHHHHHHHHhCCCC
Confidence 467899999999999999999888521 11223567889999998876643
No 105
>1zco_A 2-dehydro-3-deoxyphosphoheptonate aldolase; arabino-heptulosonate, synthase, shikimate, DAHP, DAH7P, DAH DAH7PS, lyase; HET: PEP; 2.25A {Pyrococcus furiosus}
Probab=47.55 E-value=76 Score=28.93 Aligned_cols=62 Identities=19% Similarity=0.257 Sum_probs=43.9
Q ss_pred eceEEec--CCCHHHHHHHHHHHHHcCCcEEeeccCcCCCCCCCcccccCCHHHHHHHHHHHHHhh
Q 019890 266 TSIMLGC--GETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMPVSEYITPEAFERYRALGMEMV 329 (334)
Q Consensus 266 TgiMVGl--GETdEE~~etl~~Lre~gvd~vtigqYlrP~~~h~~v~~yv~P~~f~~~~~~a~~~~ 329 (334)
.-+|.|. -|+.+...+..+.++++|++.|-+. |..|...-..... .-.+.+..+++++.++|
T Consensus 24 ~~vIAgpc~~~~~e~a~~~a~~l~~~Ga~~vk~~-~fkprts~~~~~g-~~~egl~~l~~~~~~~G 87 (262)
T 1zco_A 24 FTIIAGPCSIESREQIMKVAEFLAEVGIKVLRGG-AFKPRTSPYSFQG-YGEKALRWMREAADEYG 87 (262)
T ss_dssp CEEEEECSBCCCHHHHHHHHHHHHHTTCCEEECB-SSCCCSSTTSCCC-CTHHHHHHHHHHHHHHT
T ss_pred cEEEEeCCCCCCHHHHHHHHHHHHHcCCCEEEEE-ecccCCCcccccC-ccHHHHHHHHHHHHHcC
Confidence 3477888 8999999999999999999998765 4466432111111 23667778888877763
No 106
>1hjs_A Beta-1,4-galactanase; 4-galactanases, family 53 glycoside hydrolase, thermostability, PH optimum, CLAN GH-A, thermophIle, alkalophIle; HET: NAG EPE; 1.87A {Thielavia heterothallica} SCOP: c.1.8.3 PDB: 1hju_A* 1hjq_A*
Probab=47.40 E-value=96 Score=28.96 Aligned_cols=34 Identities=24% Similarity=0.157 Sum_probs=24.4
Q ss_pred ceEEec--CCCHHHHHHHHHHHHHcC------CcEEeeccCc
Q 019890 267 SIMLGC--GETPDQVVSTMEKVRAAG------VDVMTFGQYM 300 (334)
Q Consensus 267 giMVGl--GETdEE~~etl~~Lre~g------vd~vtigqYl 300 (334)
-+|+.+ |...+.+.--++.|.+.| +|+|.+.-|-
T Consensus 174 ~v~ih~~~~~~~~~~~~~~d~~~~~g~~~~~~~DvIG~syYp 215 (332)
T 1hjs_A 174 KIMIHLDNGWDWGTQNWWYTNVLKQGTLELSDFDMMGVSFYP 215 (332)
T ss_dssp EEEEEESCTTCHHHHHHHHHHHHTTSSSCGGGCCEEEEECCS
T ss_pred eEEEEeCCccchHHHHHHHHHHHhcCCCCCCCcCEEEEecCc
Confidence 356666 677777777777777654 8999998663
No 107
>3tva_A Xylose isomerase domain protein TIM barrel; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 2.15A {Planctomyces limnophilus}
Probab=47.02 E-value=31 Score=30.42 Aligned_cols=128 Identities=12% Similarity=0.110 Sum_probs=65.1
Q ss_pred chhHHHHHHHHHHCCCcEEEEeeec-CCCCCCchHHHHHHHHHHHHhhCCCCceeeeeccccccccccchhhHHHHHHhh
Q 019890 159 PDEPTNVAEAIASWGLDYVVITSVD-RDDLADQGSGHFAQTVRKLKELKPNMLIEALVAKSGLNVFAHNIETVEELQSAV 237 (334)
Q Consensus 159 ~~Ep~~~A~av~~~GlkeVVLTSv~-rdDl~d~Ga~~fa~lIr~Ik~~~P~i~vE~Ll~~ag~dv~~HnlETv~~l~~~V 237 (334)
.+...+.++.++++|.+.|++.++. ..+ .+.....+++.++++.+......|.+.+ +.. ..+.+...++...+
T Consensus 101 ~~~~~~~i~~a~~lG~~~v~~~~G~~~~~-~~~~~~~~~~~l~~l~~~a~~~Gv~l~l-E~~----~~~~~~~~~l~~~~ 174 (290)
T 3tva_A 101 VAEMKEISDFASWVGCPAIGLHIGFVPES-SSPDYSELVRVTQDLLTHAANHGQAVHL-ETG----QESADHLLEFIEDV 174 (290)
T ss_dssp HHHHHHHHHHHHHHTCSEEEECCCCCCCT-TSHHHHHHHHHHHHHHHHHHTTTCEEEE-ECC----SSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCCCCccc-chHHHHHHHHHHHHHHHHHHHcCCEEEE-ecC----CCCHHHHHHHHHhc
Confidence 4566777778888999999985443 222 2223344555555554432111222210 000 12233334444444
Q ss_pred cC--------------C-CCCHHHHHHHHHHHHHhCCCcceEeece-------------EEecCCCHHHHHHHHHHHHHc
Q 019890 238 RD--------------H-RANFKQSLDVLMMAKDYVPAGTLTKTSI-------------MLGCGETPDQVVSTMEKVRAA 289 (334)
Q Consensus 238 r~--------------r-~~tye~sL~vL~~ak~~~p~Gl~tkTgi-------------MVGlGETdEE~~etl~~Lre~ 289 (334)
.+ . ..+.. +.++.+...... +.++-.. .+-+|+-.-++.+.++.|++.
T Consensus 175 ~~~~~g~~~D~~h~~~~g~~d~~---~~l~~~~~~i~~-vHl~D~~~~~~~~~g~~~~~~~~~G~G~id~~~~~~~L~~~ 250 (290)
T 3tva_A 175 NRPNLGINFDPANMILYGTGNPI---EALRKVARYVRS-IHCKDALWAPVNERGKSWGQEVALGTGDVGMEAYLTTLWEI 250 (290)
T ss_dssp CCTTEEEEECHHHHHHTTCSCHH---HHHHHHGGGEEE-EEECEEECCCGGGBTTBCCEEESTTSSSSCHHHHHHHHHHT
T ss_pred CCCCEEEEeccHHHHHhCCCCHH---HHHHHHHhhheE-EEeccccCCCccccccccccccCCCCceeCHHHHHHHHHHc
Confidence 21 1 13433 444444443333 3443321 222466667899999999999
Q ss_pred CCc-EEee
Q 019890 290 GVD-VMTF 296 (334)
Q Consensus 290 gvd-~vti 296 (334)
|++ .+.+
T Consensus 251 gy~g~~~l 258 (290)
T 3tva_A 251 GYRGPLTI 258 (290)
T ss_dssp TCCSCEEE
T ss_pred CCCCcEEE
Confidence 988 4444
No 108
>1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf; substrate channeling, amidotransferase, TIM-barrel AS A SUBS tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae} SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A 1ox4_A
Probab=46.95 E-value=71 Score=32.20 Aligned_cols=138 Identities=10% Similarity=0.027 Sum_probs=71.8
Q ss_pred CCchhHHHHHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhCCCCceeee----------------------
Q 019890 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEAL---------------------- 214 (334)
Q Consensus 157 ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~P~i~vE~L---------------------- 214 (334)
.+..+|.+.|++..+.|.+++++.=.+...-...+.....++|++|++.. .+.+.+-
T Consensus 277 ~~~~dp~~~A~~~~~~Ga~~l~~~dl~~~~~~~~~~~~~~~~i~~i~~~~-~ipi~vgGGIr~~~d~~~~~~~~~~~a~~ 355 (555)
T 1jvn_A 277 RNLGKPVQLAQKYYQQGADEVTFLNITSFRDCPLKDTPMLEVLKQAAKTV-FVPLTVGGGIKDIVDVDGTKIPALEVASL 355 (555)
T ss_dssp --CHHHHHHHHHHHHTTCSEEEEEEEC---CCCGGGCHHHHHHHHHTTTC-CSCEEEESSCSCEECTTCCEECHHHHHHH
T ss_pred eEcCCHHHHHHHHHHcCCCEEEEEeCCccccccCCCchHHHHHHHHHhhC-CCcEEEeCccccchhcccccchHHHHHHH
Confidence 45569999999999999999887543321000001112457788887643 2222211
Q ss_pred eccccccccccchhhHHHHHHhhcCCCCCHHHHHHHHHHHHHhCCC-cceEeeceEEe--------------------cC
Q 019890 215 VAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPA-GTLTKTSIMLG--------------------CG 273 (334)
Q Consensus 215 l~~ag~dv~~HnlETv~~l~~~Vr~r~~tye~sL~vL~~ak~~~p~-Gl~tkTgiMVG--------------------lG 273 (334)
+.++|.|.+.-|-..++...+... +.. -...-++++++.+.++. -+.+.-+.--+ -|
T Consensus 356 ~l~aGad~V~igt~~~~~~~~~~~-~~~-~~~~~~~i~~~~~~~g~~~ivv~iD~~~~~~~~~~~~~~~~~~~~~~~~~g 433 (555)
T 1jvn_A 356 YFRSGADKVSIGTDAVYAAEKYYE-LGN-RGDGTSPIETISKAYGAQAVVISVDPKRVYVNSQADTKNKVFETEYPGPNG 433 (555)
T ss_dssp HHHHTCSEEEECHHHHHHHHHHHH-TTS-CCCSCSHHHHHHHHHCGGGEEEEECEEEEEESSGGGCSSCCEECSSCCTTC
T ss_pred HHHcCCCEEEECCHHhhCchhhcc-ccc-cccCHHHHHHHHHHhCCCcEEEEEEccccccccccccccccccccccCCCC
Confidence 455666766666444332111111 110 01112455566554431 14444444211 02
Q ss_pred C---------------CHHHHHHHHHHHHHcCCcEEeec
Q 019890 274 E---------------TPDQVVSTMEKVRAAGVDVMTFG 297 (334)
Q Consensus 274 E---------------TdEE~~etl~~Lre~gvd~vtig 297 (334)
+ |+-+..+.++.+.++|++.+.+-
T Consensus 434 ~~~~~~~v~~~Gw~~~~~~~~~e~a~~~~~~Ga~~il~t 472 (555)
T 1jvn_A 434 EKYCWYQCTIKGGRESRDLGVWELTRACEALGAGEILLN 472 (555)
T ss_dssp CCEEEEEEEETTTTEEEEEEHHHHHHHHHHTTCCEEEEC
T ss_pred CcceeEEEEEecCccCCCCCHHHHHHHHHHcCCCEEEEe
Confidence 1 33456788999999999999763
No 109
>1vcv_A Probable deoxyribose-phosphate aldolase; DERA, hyperthermophIle, archaea, lyase; 2.00A {Pyrobaculum aerophilum} SCOP: c.1.10.1
Probab=46.68 E-value=1.5e+02 Score=26.52 Aligned_cols=143 Identities=8% Similarity=0.058 Sum_probs=74.5
Q ss_pred CCCCCCcccCCCCCCCCCCchhHHHHHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhCCCCceeee-----
Q 019890 140 TRGCRFCNVKTSRAPPPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEAL----- 214 (334)
Q Consensus 140 tr~C~FC~V~~~r~p~~ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~P~i~vE~L----- 214 (334)
.+=|+-.++|.+. .+.+....+++. .+.|.++|-+.- |...+.++..+.+.+-|++|++..++..+.++
T Consensus 51 v~v~tvigFP~G~----~~~~~k~~E~~~-i~~GAdEID~Vi-nig~~~~g~~~~v~~ei~~v~~a~~~~~lKvIlEt~~ 124 (226)
T 1vcv_A 51 VKLCVVADFPFGA----LPTASRIALVSR-LAEVADEIDVVA-PIGLVKSRRWAEVRRDLISVVGAAGGRVVKVITEEPY 124 (226)
T ss_dssp SEEEEEESTTTCC----SCHHHHHHHHHH-HTTTCSEEEEEC-CHHHHHTTCHHHHHHHHHHHHHHTTTSEEEEECCGGG
T ss_pred CeEEEEeCCCCCC----CchHHHHHHHHH-HHCCCCEEEEec-chhhhcCCCHHHHHHHHHHHHHHHcCCCceEEEeccC
Confidence 3446666677644 456667788888 899999985532 21112233345666777777777655444433
Q ss_pred ------------eccccccccccc--hh---hHHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCcceEeeceEEecCCCHH
Q 019890 215 ------------VAKSGLNVFAHN--IE---TVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPD 277 (334)
Q Consensus 215 ------------l~~ag~dv~~Hn--lE---Tv~~l~~~Vr~r~~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGlGETdE 277 (334)
..++|.|++.-. .. -....+.. .+++.++-.-..+.+++..+. +.+|... |. -|.+
T Consensus 125 Lt~eei~~a~~ia~eaGADfVKTSTGf~~~~~~~~~~~~---~gAt~~dv~lm~~~i~~~g~~-v~vKaaG--Gi-rt~~ 197 (226)
T 1vcv_A 125 LRDEERYTLYDIIAEAGAHFIKSSTGFAEEAYAARQGNP---VHSTPERAAAIARYIKEKGYR-LGVKMAG--GI-RTRE 197 (226)
T ss_dssp CCHHHHHHHHHHHHHHTCSEEECCCSCCCHHHHHHTTCC---SSCCHHHHHHHHHHHHHHTCC-CEEEEES--SC-CSHH
T ss_pred CCHHHHHHHHHHHHHcCCCEEEeCCCCCccccccccCCC---CCCCHHHHHHHHHHHHHhCCC-ceEEEeC--CC-CCHH
Confidence 344555554422 10 00111111 244544432222222333222 5555432 22 3477
Q ss_pred HHHHHHHHHHHcCCc----EEee
Q 019890 278 QVVSTMEKVRAAGVD----VMTF 296 (334)
Q Consensus 278 E~~etl~~Lre~gvd----~vti 296 (334)
|+++.++.. ++|.+ +++.
T Consensus 198 ~al~~i~a~-~~Ga~~~~fRiGt 219 (226)
T 1vcv_A 198 QAKAIVDAI-GWGEDPARVRLGT 219 (226)
T ss_dssp HHHHHHHHH-CSCSCTTTEEEEE
T ss_pred HHHHHHHHH-HCCCCcCCceEec
Confidence 888877777 57887 6654
No 110
>3hgj_A Chromate reductase; TIM barrel, oxidoreductase; HET: FMN; 2.00A {Thermus scotoductus} SCOP: c.1.4.0 PDB: 3hf3_A*
Probab=45.54 E-value=40 Score=31.85 Aligned_cols=50 Identities=18% Similarity=0.274 Sum_probs=35.3
Q ss_pred HHHHHHHHHhCCCcceE--eece--EEecCCCHHHHHHHHHHHHHcCCcEEeec
Q 019890 248 LDVLMMAKDYVPAGTLT--KTSI--MLGCGETPDQVVSTMEKVRAAGVDVMTFG 297 (334)
Q Consensus 248 L~vL~~ak~~~p~Gl~t--kTgi--MVGlGETdEE~~etl~~Lre~gvd~vtig 297 (334)
+++++.+|+..+..+.+ +-+. .+.-|-+.+|..+.++.|.+.|+|.+++.
T Consensus 206 ~eiv~aVR~avG~d~pV~vRls~~~~~~~g~~~~~~~~la~~L~~~Gvd~i~vs 259 (349)
T 3hgj_A 206 LQVAQAVREVVPRELPLFVRVSATDWGEGGWSLEDTLAFARRLKELGVDLLDCS 259 (349)
T ss_dssp HHHHHHHHHHSCTTSCEEEEEESCCCSTTSCCHHHHHHHHHHHHHTTCCEEEEE
T ss_pred HHHHHHHHHHhcCCceEEEEeccccccCCCCCHHHHHHHHHHHHHcCCCEEEEe
Confidence 67888888876432322 2111 11116789999999999999999999986
No 111
>4gj1_A 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) methylideneamino] imidazole-4-carboxamide...; HISA, csgid, niaid,; 2.15A {Campylobacter jejuni subsp}
Probab=44.73 E-value=18 Score=32.51 Aligned_cols=48 Identities=19% Similarity=0.358 Sum_probs=31.2
Q ss_pred chhHHHHHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhCCCC
Q 019890 159 PDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNM 209 (334)
Q Consensus 159 ~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~P~i 209 (334)
.-++.+.++.+.++|+.++++|++++|-.-. |.. .++++.|.+..|++
T Consensus 150 ~~~~~~~~~~~~~~g~~eil~t~Id~DGt~~-G~d--~~l~~~l~~~~~~i 197 (243)
T 4gj1_A 150 DKKLMEVLDFYSNKGLKHILCTDISKDGTMQ-GVN--VRLYKLIHEIFPNI 197 (243)
T ss_dssp CCBHHHHHHHHHTTTCCEEEEEETTC------CCC--HHHHHHHHHHCTTS
T ss_pred cchHHHHHHHHhhcCCcEEEeeeeccccccc-CCC--HHHHHHHHHhcCCC
Confidence 3445677777889999999999999863322 222 25777777765554
No 112
>3qfe_A Putative dihydrodipicolinate synthase family PROT; seattle structural genomics center for infectious disease, S coccidioides, valley fever; 2.35A {Coccidioides immitis}
Probab=44.46 E-value=2e+02 Score=26.72 Aligned_cols=139 Identities=14% Similarity=0.082 Sum_probs=84.7
Q ss_pred CCCCchhHHHHHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhCCCCceeeeeccccccccccchhhHHHHH
Q 019890 155 PPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVAKSGLNVFAHNIETVEELQ 234 (334)
Q Consensus 155 ~~ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~P~i~vE~Ll~~ag~dv~~HnlETv~~l~ 234 (334)
..+|.+...+.++.+.+.|++-+++.|.+.. ......+.-.++++.+.+...+ .+-++.+-
T Consensus 27 g~iD~~~l~~lv~~li~~Gv~gl~v~GtTGE-~~~Ls~~Er~~v~~~~~~~~~g----------rvpviaGv-------- 87 (318)
T 3qfe_A 27 DTLDLASQERYYAYLARSGLTGLVILGTNAE-AFLLTREERAQLIATARKAVGP----------DFPIMAGV-------- 87 (318)
T ss_dssp TEECHHHHHHHHHHHHTTTCSEEEESSGGGT-GGGSCHHHHHHHHHHHHHHHCT----------TSCEEEEC--------
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEeCccccC-hhhCCHHHHHHHHHHHHHHhCC----------CCcEEEeC--------
Confidence 4588899999999999999999998775531 1111123344566655543211 12233322
Q ss_pred HhhcCCCCCHHHHHHHHHHHHHhCCCcceEeeceEEecCCCHHHHHHHHHHHHHcCCcEEeeccCcCCCCC-CCcccccC
Q 019890 235 SAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKR-HMPVSEYI 313 (334)
Q Consensus 235 ~~Vr~r~~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGlGETdEE~~etl~~Lre~gvd~vtigqYlrP~~~-h~~v~~yv 313 (334)
-..+.++.++..+++.+.--+|+.+-+-.-+.-.-+++++.+.++.+.+.- + ++|.-|--|... .. -+
T Consensus 88 -----g~~~t~~ai~la~~a~~~Gadavlv~~P~y~~kp~~~~~l~~~f~~ia~a~-~-lPiilYn~P~~t~g~----~l 156 (318)
T 3qfe_A 88 -----GAHSTRQVLEHINDASVAGANYVLVLPPAYFGKATTPPVIKSFFDDVSCQS-P-LPVVIYNFPGVCNGI----DL 156 (318)
T ss_dssp -----CCSSHHHHHHHHHHHHHHTCSEEEECCCCC---CCCHHHHHHHHHHHHHHC-S-SCEEEEECCC----C----CC
T ss_pred -----CCCCHHHHHHHHHHHHHcCCCEEEEeCCcccCCCCCHHHHHHHHHHHHhhC-C-CCEEEEeCCcccCCC----CC
Confidence 235678889999999987444443333322222268999999999998752 3 677778778642 33 35
Q ss_pred CHHHHHHHHH
Q 019890 314 TPEAFERYRA 323 (334)
Q Consensus 314 ~P~~f~~~~~ 323 (334)
+|+.+.++.+
T Consensus 157 ~~~~~~~La~ 166 (318)
T 3qfe_A 157 DSDMITTIAR 166 (318)
T ss_dssp CHHHHHHHHH
T ss_pred CHHHHHHHHh
Confidence 6766666653
No 113
>1ydo_A HMG-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG,; 2.71A {Bacillus subtilis subsp}
Probab=44.04 E-value=30 Score=32.27 Aligned_cols=50 Identities=10% Similarity=0.193 Sum_probs=37.2
Q ss_pred CCCchhHHHHHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhCCCC
Q 019890 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNM 209 (334)
Q Consensus 156 ~ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~P~i 209 (334)
..+++.+.+.++++.++|.+.|.|--- ..-.-...+.++|++|++..|++
T Consensus 153 ~~~~~~~~~~~~~~~~~Ga~~i~l~DT----~G~~~P~~v~~lv~~l~~~~~~~ 202 (307)
T 1ydo_A 153 DVPIEQVIRLSEALFEFGISELSLGDT----IGAANPAQVETVLEALLARFPAN 202 (307)
T ss_dssp CCCHHHHHHHHHHHHHHTCSCEEEECS----SCCCCHHHHHHHHHHHHTTSCGG
T ss_pred CCCHHHHHHHHHHHHhcCCCEEEEcCC----CCCcCHHHHHHHHHHHHHhCCCC
Confidence 367899999999999999998888411 11223567889999998877654
No 114
>4dpp_A DHDPS 2, dihydrodipicolinate synthase 2, chloroplastic; amino-acid biosynthesis, (S)-lysine biosynthesis VIA DAP PAT (beta/alpha)8-barrel; 2.00A {Arabidopsis thaliana} PDB: 4dpq_A* 3tuu_A*
Probab=44.02 E-value=58 Score=31.34 Aligned_cols=52 Identities=8% Similarity=0.146 Sum_probs=41.0
Q ss_pred CCHHHHHHHHHHHHHhCCCcceEeeceEEecC-CCHHHHHHHHHHHHHcCCcEEeec
Q 019890 242 ANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCG-ETPDQVVSTMEKVRAAGVDVMTFG 297 (334)
Q Consensus 242 ~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGlG-ETdEE~~etl~~Lre~gvd~vtig 297 (334)
-+.+++.++++.+.+...+ +.-+|+|.| .+-+|.++..+..+++|+|-+-+-
T Consensus 109 Ls~eEr~~vi~~~ve~~~g----rvpViaGvg~~st~eai~la~~A~~~Gadavlvv 161 (360)
T 4dpp_A 109 MSWDEHIMLIGHTVNCFGG----SIKVIGNTGSNSTREAIHATEQGFAVGMHAALHI 161 (360)
T ss_dssp SCHHHHHHHHHHHHHHHTT----TSEEEEECCCSSHHHHHHHHHHHHHTTCSEEEEE
T ss_pred CCHHHHHHHHHHHHHHhCC----CCeEEEecCCCCHHHHHHHHHHHHHcCCCEEEEc
Confidence 4678888889888876443 345899995 689999999999999999965553
No 115
>2hjp_A Phosphonopyruvate hydrolase; phosporus-Ca cleavage, PEP mutase/isocitrate lyase superfamily; HET: XYS PPR; 1.90A {Variovorax SP} PDB: 2dua_A* 2hrw_A
Probab=43.06 E-value=94 Score=28.88 Aligned_cols=76 Identities=16% Similarity=0.186 Sum_probs=55.2
Q ss_pred CCCHHHHHHHHHHHHHhCCCcceEeeceEEecCCCHHHHHHHHHHHHHcCCcEEeec-cCcCCCCCCCc--ccccCCHHH
Q 019890 241 RANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFG-QYMRPSKRHMP--VSEYITPEA 317 (334)
Q Consensus 241 ~~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGlGETdEE~~etl~~Lre~gvd~vtig-qYlrP~~~h~~--v~~yv~P~~ 317 (334)
..++++.+..++.+.+..+ +.+-.|+=.||| +.+++.++.+.|.+.|+.-|+|= |-..|..-|+. -...++.++
T Consensus 57 ~vt~~em~~~~~~I~~~~~--~PviaD~d~Gyg-~~~~~~~~v~~l~~aGa~gv~iED~~~~k~cgH~~~~~k~l~p~~e 133 (290)
T 2hjp_A 57 ILSMSTHLEMMRAIASTVS--IPLIADIDTGFG-NAVNVHYVVPQYEAAGASAIVMEDKTFPKDTSLRTDGRQELVRIEE 133 (290)
T ss_dssp CSCHHHHHHHHHHHHTTCS--SCEEEECTTTTS-SHHHHHHHHHHHHHHTCSEEEEECBCSSCCC-------CCBCCHHH
T ss_pred CCCHHHHHHHHHHHHhcCC--CCEEEECCCCCC-CHHHHHHHHHHHHHhCCeEEEEcCCCCCccccccccCCCcccCHHH
Confidence 4678888888888877554 346677777888 99999999999999999999984 43456667888 667788876
Q ss_pred HH
Q 019890 318 FE 319 (334)
Q Consensus 318 f~ 319 (334)
+.
T Consensus 134 ~~ 135 (290)
T 2hjp_A 134 FQ 135 (290)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 116
>2y5s_A DHPS, dihydropteroate synthase; transferase, folate biosynthesis; HET: 78H; 1.95A {Burkholderia cenocepacia} PDB: 2y5j_A*
Probab=42.64 E-value=1e+02 Score=28.72 Aligned_cols=132 Identities=17% Similarity=0.145 Sum_probs=70.0
Q ss_pred CCCchhHHHHHHHHHHCCCcEEEEeeec-CCCCC----CchHHHHHHHHHHHHhhCCCCceeee-------ecccccccc
Q 019890 156 PPDPDEPTNVAEAIASWGLDYVVITSVD-RDDLA----DQGSGHFAQTVRKLKELKPNMLIEAL-------VAKSGLNVF 223 (334)
Q Consensus 156 ~ld~~Ep~~~A~av~~~GlkeVVLTSv~-rdDl~----d~Ga~~fa~lIr~Ik~~~P~i~vE~L-------l~~ag~dv~ 223 (334)
..+.+++.+.|+...+.|.+.|-|=+.. |...+ +.....+..+|++|++..--++|... -.++|.+++
T Consensus 42 ~~~~~~a~~~a~~~v~~GAdiIDIGgeSTrPga~~v~~~eE~~Rv~pvi~~l~~~~vpiSIDT~~~~Va~aAl~aGa~iI 121 (294)
T 2y5s_A 42 FLARDDALRRAERMIAEGADLLDIGGESTRPGAPPVPLDEELARVIPLVEALRPLNVPLSIDTYKPAVMRAALAAGADLI 121 (294)
T ss_dssp --CTTHHHHHHHHHHHTTCSEEEEESSCCSTTCCCCCHHHHHHHHHHHHHHHGGGCSCEEEECCCHHHHHHHHHHTCSEE
T ss_pred cCCHHHHHHHHHHHHHCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHhhCCCeEEEECCCHHHHHHHHHcCCCEE
Confidence 4689999999999999999998885522 22111 12245566666776653111333322 222355554
Q ss_pred ccc-hhhHHHHHHhhcC--------------CC-----CC--------HHHHHHHHHHHHHhCCCcce---EeeceEEec
Q 019890 224 AHN-IETVEELQSAVRD--------------HR-----AN--------FKQSLDVLMMAKDYVPAGTL---TKTSIMLGC 272 (334)
Q Consensus 224 ~Hn-lETv~~l~~~Vr~--------------r~-----~t--------ye~sL~vL~~ak~~~p~Gl~---tkTgiMVGl 272 (334)
|-- -+.-+.+.+-+.. .. .. .+...+.++.+.+. |+. +--+--+||
T Consensus 122 NdVsg~~d~~m~~~~a~~~~~vVlmh~~G~p~tm~~~~~~y~dv~~ev~~~l~~~i~~a~~~---Gi~~~~IilDPG~Gf 198 (294)
T 2y5s_A 122 NDIWGFRQPGAIDAVRDGNSGLCAMHMLGEPQTMQVGEPDYGDVVTDVRDFLAARAQALRDA---GVAAERICVDPGFGF 198 (294)
T ss_dssp EETTTTCSTTHHHHHSSSSCEEEEECCCEETTTTEECCCCCSSHHHHHHHHHHHHHHHHHHT---TCCGGGEEEECCTTS
T ss_pred EECCCCCchHHHHHHHHhCCCEEEECCCCCCccccccCCccccHHHHHHHHHHHHHHHHHHc---CCChhhEEEeCCCcc
Confidence 421 0101222222111 00 01 23333455555554 543 334444589
Q ss_pred CCCH-HHHHHHHHHHHHcC
Q 019890 273 GETP-DQVVSTMEKVRAAG 290 (334)
Q Consensus 273 GETd-EE~~etl~~Lre~g 290 (334)
|.|. ++-.++|+.|+++.
T Consensus 199 ~kt~~~~n~~ll~~l~~l~ 217 (294)
T 2y5s_A 199 GKAVVDDNYALLAALPDTA 217 (294)
T ss_dssp SSCTTHHHHHHHHTGGGGS
T ss_pred cccchHHHHHHHHHHHHHH
Confidence 9999 98888888888765
No 117
>3l21_A DHDPS, dihydrodipicolinate synthase; DAPA, dimer, RV2753C, lysine biosynthesis, amino-acid biosynthesis, diaminopimelate biosynthesis; HET: KPI CME; 2.10A {Mycobacterium tuberculosis} SCOP: c.1.10.1 PDB: 1xxx_A
Probab=42.64 E-value=91 Score=28.82 Aligned_cols=136 Identities=15% Similarity=0.151 Sum_probs=84.9
Q ss_pred CCCCchhHHHHHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhCCCCceeeeeccccccccccchhhHHHHH
Q 019890 155 PPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVAKSGLNVFAHNIETVEELQ 234 (334)
Q Consensus 155 ~~ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~P~i~vE~Ll~~ag~dv~~HnlETv~~l~ 234 (334)
..+|.+...+.++.+.+.|++-+++.|.+.. ......+.-.++++.+.+...+ .+-++.+-
T Consensus 31 g~iD~~~l~~lv~~li~~Gv~gi~v~GttGE-~~~Lt~~Er~~v~~~~~~~~~g----------rvpviaGv-------- 91 (304)
T 3l21_A 31 GSLDTATAARLANHLVDQGCDGLVVSGTTGE-SPTTTDGEKIELLRAVLEAVGD----------RARVIAGA-------- 91 (304)
T ss_dssp SCBCHHHHHHHHHHHHHTTCSEEEESSTTTT-GGGSCHHHHHHHHHHHHHHHTT----------TSEEEEEC--------
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEeCccccc-hhhCCHHHHHHHHHHHHHHhCC----------CCeEEEeC--------
Confidence 4689999999999999999999988775531 2211223345566665553211 12233322
Q ss_pred HhhcCCCCCHHHHHHHHHHHHHhCCCcceEeeceEEecCCCHHHHHHHHHHHHHcCCcEEeeccCcCCCCCCCcccccCC
Q 019890 235 SAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMPVSEYIT 314 (334)
Q Consensus 235 ~~Vr~r~~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGlGETdEE~~etl~~Lre~gvd~vtigqYlrP~~~h~~v~~yv~ 314 (334)
-..+.++.++..+++.+.--+|+.+-+-.- +.-|++++.+.++.+.+.= -++|.-|--|.... -.++
T Consensus 92 -----g~~~t~~ai~la~~a~~~Gadavlv~~P~y--~~~s~~~l~~~f~~va~a~--~lPiilYn~P~~tg----~~l~ 158 (304)
T 3l21_A 92 -----GTYDTAHSIRLAKACAAEGAHGLLVVTPYY--SKPPQRGLQAHFTAVADAT--ELPMLLYDIPGRSA----VPIE 158 (304)
T ss_dssp -----CCSCHHHHHHHHHHHHHHTCSEEEEECCCS--SCCCHHHHHHHHHHHHTSC--SSCEEEEECHHHHS----SCCC
T ss_pred -----CCCCHHHHHHHHHHHHHcCCCEEEECCCCC--CCCCHHHHHHHHHHHHHhc--CCCEEEEeCccccC----CCCC
Confidence 235678889999999987444333333222 2448999999999998863 35666676564322 2456
Q ss_pred HHHHHHHH
Q 019890 315 PEAFERYR 322 (334)
Q Consensus 315 P~~f~~~~ 322 (334)
|+.+.++.
T Consensus 159 ~~~~~~La 166 (304)
T 3l21_A 159 PDTIRALA 166 (304)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 76666654
No 118
>1w1z_A Delta-aminolevulinic acid dehydratase; synthase, tetrapyrrole biosynthesis, ALAD, porphyrin biosynt heme biosynthesis, lyase; 2.6A {Prosthecochloris vibrioformis} SCOP: c.1.10.3 PDB: 2c1h_A*
Probab=42.14 E-value=27 Score=33.45 Aligned_cols=118 Identities=21% Similarity=0.272 Sum_probs=75.5
Q ss_pred CCCchhHHHHHHHHHHCCCcEEEEeeecCCCCCC-chH------HHHHHHHHHHHhhCCCCcee--e-e----------e
Q 019890 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRDDLAD-QGS------GHFAQTVRKLKELKPNMLIE--A-L----------V 215 (334)
Q Consensus 156 ~ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d-~Ga------~~fa~lIr~Ik~~~P~i~vE--~-L----------l 215 (334)
..+.+.+.++++.+.++|++-|.|=|+.. ..| .|. .-+.+.|++||+.+|++.|= + | +
T Consensus 60 r~sid~l~~~~~~~~~lGi~~v~LFgvp~--~Kd~~gs~A~~~~g~v~rair~iK~~~p~l~vitDvcLc~YT~HGHcGi 137 (328)
T 1w1z_A 60 RFTIDRAVEECKELYDLGIQGIDLFGIPE--QKTEDGSEAYNDNGILQQAIRAIKKAVPELCIMTDVALDPFTPFGHDGL 137 (328)
T ss_dssp EEEHHHHHHHHHHHHHHTCCEEEEEECCS--SCCSSCGGGGCTTSHHHHHHHHHHHHSTTSEEEEEECSTTTSTTSCSSE
T ss_pred EeCHHHHHHHHHHHHHCCCCEEEEECCCC--CCCccccccCCCCChHHHHHHHHHHHCCCeEEEEeeecccCCCCCceee
Confidence 46789999999999999999999999842 122 111 25678999999999996442 1 1 2
Q ss_pred ccccccccccchhhHHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCcceEeeceEEecCCCHHHHHHHHHHHHHcCCcEEe
Q 019890 216 AKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMT 295 (334)
Q Consensus 216 ~~ag~dv~~HnlETv~~l~~~Vr~r~~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGlGETdEE~~etl~~Lre~gvd~vt 295 (334)
.+.| .-.|-+|++.|-+. -+.+|+. --+ ++--|++|=|- +...=+-|.+.|+..+.
T Consensus 138 l~~g---~V~ND~Tl~~L~k~-------------Als~A~A-GAD-iVAPSdMMDGr------V~aIR~aLd~~G~~~v~ 193 (328)
T 1w1z_A 138 VKDG---IILNDETVEVLQKM-------------AVSHAEA-GAD-FVSPSDMMDGR------IGAIREALDETDHSDVG 193 (328)
T ss_dssp ESSS---CEEHHHHHHHHHHH-------------HHHHHHH-TCS-EEEECSCCTTH------HHHHHHHHHHTTCTTSE
T ss_pred ccCC---cCccHHHHHHHHHH-------------HHHHHHc-CCC-eEecccccccH------HHHHHHHHHhCCCCCce
Confidence 2211 12255566655432 2234444 123 56678888764 33444457888888888
Q ss_pred eccC
Q 019890 296 FGQY 299 (334)
Q Consensus 296 igqY 299 (334)
|-.|
T Consensus 194 ImsY 197 (328)
T 1w1z_A 194 ILSY 197 (328)
T ss_dssp EEEE
T ss_pred eeeh
Confidence 8776
No 119
>3ble_A Citramalate synthase from leptospira interrogans; TIM barrel, licmsn, substrate specificity, acyltransferase, amino-acid biosynthesis; 2.00A {Leptospira interrogans} PDB: 3blf_A 3bli_A*
Probab=42.09 E-value=49 Score=31.15 Aligned_cols=51 Identities=18% Similarity=0.175 Sum_probs=38.1
Q ss_pred CCchhHHHHHHHHHHCCCcEEEE--eeecCCCCCCchHHHHHHHHHHHHhhCCCCceee
Q 019890 157 PDPDEPTNVAEAIASWGLDYVVI--TSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEA 213 (334)
Q Consensus 157 ld~~Ep~~~A~av~~~GlkeVVL--TSv~rdDl~d~Ga~~fa~lIr~Ik~~~P~i~vE~ 213 (334)
.+++.+.++++++.++|.+.|.| |.+- .-...+.++|++|++..|++.+++
T Consensus 166 ~~~~~~~~~~~~~~~~Ga~~i~l~DT~G~------~~P~~v~~lv~~l~~~~p~~~i~~ 218 (337)
T 3ble_A 166 NSPDYVKSLVEHLSKEHIERIFLPDTLGV------LSPEETFQGVDSLIQKYPDIHFEF 218 (337)
T ss_dssp HCHHHHHHHHHHHHTSCCSEEEEECTTCC------CCHHHHHHHHHHHHHHCTTSCEEE
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCCCC------cCHHHHHHHHHHHHHhcCCCeEEE
Confidence 46888899999999999999888 2221 124678899999998887654443
No 120
>2xwp_A Sirohydrochlorin cobaltochelatase; lyase, beta-alpha-beta, cobalamin biosynthesis, metal-bindin parallel beta sheet; HET: SIR; 1.90A {Salmonella enterica} PDB: 1qgo_A*
Probab=41.21 E-value=1.9e+02 Score=25.71 Aligned_cols=35 Identities=20% Similarity=0.228 Sum_probs=28.9
Q ss_pred ceEEecCCCHHHHHHHHHHHHHcCCcEEeeccCcC
Q 019890 267 SIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMR 301 (334)
Q Consensus 267 giMVGlGETdEE~~etl~~Lre~gvd~vtigqYlr 301 (334)
.+-+|+-|..=.+.+.++.|.+.|+..|.+.+|+=
T Consensus 168 ~v~~g~~e~~P~~~~~l~~l~~~G~~~v~v~P~~l 202 (264)
T 2xwp_A 168 PARVGAVESYPEVDILIDSLRDEGVTGVHLMPLML 202 (264)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHHTCCEEEEEECSS
T ss_pred CEEEEEeCCCCCHHHHHHHHHHCCCCEEEEEeeec
Confidence 45678866667789999999999999999999963
No 121
>1ydn_A Hydroxymethylglutaryl-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative; 2.30A {Brucella melitensis}
Probab=40.27 E-value=39 Score=30.86 Aligned_cols=48 Identities=17% Similarity=0.255 Sum_probs=34.9
Q ss_pred CCchhHHHHHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhCCC
Q 019890 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPN 208 (334)
Q Consensus 157 ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~P~ 208 (334)
.++++..+.++.+.+.|++.+.|--. ..-.....+.++|++|++..|+
T Consensus 152 ~~~~~~~~~~~~~~~~G~d~i~l~Dt----~G~~~P~~~~~lv~~l~~~~~~ 199 (295)
T 1ydn_A 152 VTPQAVASVTEQLFSLGCHEVSLGDT----IGRGTPDTVAAMLDAVLAIAPA 199 (295)
T ss_dssp CCHHHHHHHHHHHHHHTCSEEEEEET----TSCCCHHHHHHHHHHHHTTSCG
T ss_pred CCHHHHHHHHHHHHhcCCCEEEecCC----CCCcCHHHHHHHHHHHHHhCCC
Confidence 57889999999999999998887521 1222356778889988887553
No 122
>2pcq_A Putative dihydrodipicolinate synthase; lyase, lysine biosynthesis, dihydrodipicoliante, S genomics, NPPSFA; 2.10A {Thermus thermophilus}
Probab=40.17 E-value=44 Score=30.61 Aligned_cols=47 Identities=17% Similarity=0.165 Sum_probs=34.6
Q ss_pred CCHHHHHHHHHHHHHhCCCcceEeeceEEecC-CCHHHHHHHHHHHHHcCCcEEee
Q 019890 242 ANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCG-ETPDQVVSTMEKVRAAGVDVMTF 296 (334)
Q Consensus 242 ~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGlG-ETdEE~~etl~~Lre~gvd~vti 296 (334)
-+.+++.++++.+.+ +.-+|+|.| .+-+|.++..+..+++|+|-+-+
T Consensus 47 Ls~~Er~~v~~~~~~--------rvpviaGvg~~~t~~ai~la~~A~~~Gadavlv 94 (283)
T 2pcq_A 47 LTPEERARGLRALRP--------RKPFLVGLMEETLPQAEGALLEAKAAGAMALLA 94 (283)
T ss_dssp SCHHHHHHHHHTCCC--------SSCCEEEECCSSHHHHHHHHHHHHHHTCSEEEE
T ss_pred cCHHHHHHHHHHHHh--------CCcEEEeCCCCCHHHHHHHHHHHHhcCCCEEEe
Confidence 456677777776543 345788884 57788899999999999996654
No 123
>4djd_D C/Fe-SP, corrinoid/iron-sulfur protein small subunit; TIM barrel, rossmann fold, B12-dependent methyltransferase; HET: B12; 2.38A {Moorella thermoacetica} PDB: 4dje_D* 4djf_D*
Probab=39.64 E-value=1.6e+02 Score=27.93 Aligned_cols=126 Identities=16% Similarity=0.203 Sum_probs=71.7
Q ss_pred chhHHHHHHHHH-HCCCcEEEEeee-cCCCCCCchHHHHHHHHHHHHhhCCC-Ccee-----ee---ecccccccccc--
Q 019890 159 PDEPTNVAEAIA-SWGLDYVVITSV-DRDDLADQGSGHFAQTVRKLKELKPN-MLIE-----AL---VAKSGLNVFAH-- 225 (334)
Q Consensus 159 ~~Ep~~~A~av~-~~GlkeVVLTSv-~rdDl~d~Ga~~fa~lIr~Ik~~~P~-i~vE-----~L---l~~ag~dv~~H-- 225 (334)
.+++.+.|+... +.|.+.|-|-+. .|.+..+-..+.+.++|++|.+...- ++|. -. +++++++..++
T Consensus 79 ~~~~~~~A~~~v~~~GAdiIDIg~eStrP~~~~vs~ee~~~~V~~v~~~~~vPlsIDg~~~~T~~~eV~eaAleagag~~ 158 (323)
T 4djd_D 79 INEPGRWAQKCVAEYGADLIYLKLDGADPEGANHSVDQCVATVKEVLQAVGVPLVVVGCGDVEKDHEVLEAVAEAAAGEN 158 (323)
T ss_dssp TTCHHHHHHHHHHTTCCSEEEEECGGGCTTTTCCCHHHHHHHHHHHHHHCCSCEEEECCSCHHHHHHHHHHHHHHTTTSC
T ss_pred HHhHHHHHHHHHHHcCCCEEEEcCccCCCCCCCCCHHHHHHHHHHHHhhCCceEEEECCCCCCCCHHHHHHHHHhcCCCC
Confidence 456899999887 899999988532 23333344566788899999876311 3444 22 44444444333
Q ss_pred ------chhhHHHHHHhhcC--------CCCCHHHHHHHHHHHHHhCCCcceEeeceE----Ee-cCCCHHHHHHHHHHH
Q 019890 226 ------NIETVEELQSAVRD--------HRANFKQSLDVLMMAKDYVPAGTLTKTSIM----LG-CGETPDQVVSTMEKV 286 (334)
Q Consensus 226 ------nlETv~~l~~~Vr~--------r~~tye~sL~vL~~ak~~~p~Gl~tkTgiM----VG-lGETdEE~~etl~~L 286 (334)
+.+..+.+.+-+.. ...+.+-.-++++.+.+. |+ -...|| +| ||-+.++-.++|+.|
T Consensus 159 ~lINsv~~~~~~~m~~laa~~g~~vVlmh~~d~~~~~~l~~~a~~~---GI-~~e~IIlDPg~g~fgk~~e~~l~~l~~i 234 (323)
T 4djd_D 159 LLLGNAEQENYKSLTAACMVHKHNIIARSPLDINICKQLNILINEM---NL-PLDHIVIDPSIGGLGYGIEYSFSIMERI 234 (323)
T ss_dssp CEEEEEBTTBCHHHHHHHHHHTCEEEEECSSCHHHHHHHHHHHHTT---TC-CGGGEEEECCCCCTTTTHHHHHHHHHHH
T ss_pred CeEEECCcccHHHHHHHHHHhCCeEEEEccchHHHHHHHHHHHHHc---CC-CHHHEEEeCCCccccCCHHHHHHHHHHH
Confidence 11212333332220 112333333444555554 54 123444 46 689999999999999
Q ss_pred HH
Q 019890 287 RA 288 (334)
Q Consensus 287 re 288 (334)
+.
T Consensus 235 r~ 236 (323)
T 4djd_D 235 RL 236 (323)
T ss_dssp HH
T ss_pred HH
Confidence 86
No 124
>1rd5_A Tryptophan synthase alpha chain, chloroplast; hydroxamic acid, diboa, dimboa, indole, indole-glycerol-PHOS lyase; 2.02A {Zea mays} SCOP: c.1.2.4 PDB: 1tjr_A
Probab=38.97 E-value=2e+02 Score=25.30 Aligned_cols=71 Identities=23% Similarity=0.368 Sum_probs=41.5
Q ss_pred HHHHHHHHHHhCCCcceEeeceEEecCCC-HHHHHHHHHHHHHcCCcEEeeccCc-CCCCCCCcccccCCHH-HHHHHHH
Q 019890 247 SLDVLMMAKDYVPAGTLTKTSIMLGCGET-PDQVVSTMEKVRAAGVDVMTFGQYM-RPSKRHMPVSEYITPE-AFERYRA 323 (334)
Q Consensus 247 sL~vL~~ak~~~p~Gl~tkTgiMVGlGET-dEE~~etl~~Lre~gvd~vtigqYl-rP~~~h~~v~~yv~P~-~f~~~~~ 323 (334)
.++.++++++. +..-+++|+|=+ .+++.+ +.+.|.|.+.+|..+ ++.. ++-.|+ ..+.+++
T Consensus 189 ~~~~i~~v~~~------~~~pI~vgGGI~~~e~~~~----~~~~GAdgvvVGSai~~~~~------~~~~~~~~~~~~~~ 252 (262)
T 1rd5_A 189 VESLIQEVKKV------TNKPVAVGFGISKPEHVKQ----IAQWGADGVIIGSAMVRQLG------EAASPKQGLRRLEE 252 (262)
T ss_dssp HHHHHHHHHHH------CSSCEEEESCCCSHHHHHH----HHHTTCSEEEECHHHHHHHH------SSSSHHHHHHHHHH
T ss_pred HHHHHHHHHhh------cCCeEEEECCcCCHHHHHH----HHHcCCCEEEEChHHHhHHH------hccChhHHHHHHHH
Confidence 34455555553 134577888776 666555 455888988888664 2221 122344 3567777
Q ss_pred HHHHhhcCCC
Q 019890 324 LGMEMVSGSG 333 (334)
Q Consensus 324 ~a~~~~~~~~ 333 (334)
+..+|-.+.|
T Consensus 253 ~~~~l~~~~~ 262 (262)
T 1rd5_A 253 YARGMKNALG 262 (262)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHhhC
Confidence 7777755443
No 125
>1jub_A Dihydroorotate dehydrogenase A; homodimer, alpha-beta barrel, flavoprotein, mutant enzyme, oxidoreductase; HET: FMN; 1.40A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ovd_A* 1jue_A* 1dor_A* 2bsl_A* 2bx7_A* 2dor_A* 1jqv_A* 1jrb_A* 1jrc_A* 1jqx_A*
Probab=38.95 E-value=49 Score=30.20 Aligned_cols=109 Identities=9% Similarity=0.087 Sum_probs=0.0
Q ss_pred ecCCCCCCchHHHHHHHHHHHHhhC--CC-Cceeee-------------ecccccc-ccccchhhHHHHHHhhcCCCCCH
Q 019890 182 VDRDDLADQGSGHFAQTVRKLKELK--PN-MLIEAL-------------VAKSGLN-VFAHNIETVEELQSAVRDHRANF 244 (334)
Q Consensus 182 v~rdDl~d~Ga~~fa~lIr~Ik~~~--P~-i~vE~L-------------l~~ag~d-v~~HnlETv~~l~~~Vr~r~~ty 244 (334)
.|+-.+.+.|.+.+.+.++..++.. .. +.+.+. +.++|.| .+.-|+ .+|.. +.-+.-..+.
T Consensus 66 in~~g~~~~g~~~~~~~~~~~~~~~~~~~p~~~~i~g~~~~~~~~~a~~~~~~g~d~~iein~-~~P~~-~g~~~~g~~~ 143 (311)
T 1jub_A 66 INSMGLPNLGFDYYLDYVLKNQKENAQEGPIFFSIAGMSAAENIAMLKKIQESDFSGITELNL-SCPNV-PGEPQLAYDF 143 (311)
T ss_dssp EECCCCCBSCHHHHHHHHHHHHHHTCSSSCCEEEECCSSHHHHHHHHHHHHHSCCCSEEEEES-CCCCS-SSCCCGGGCH
T ss_pred eecCCCCCccHHHHHHHHHHHHHhcCCCCCEEEEcCCCCHHHHHHHHHHHHhcCCCeEEEEec-cCCCC-CCcccccCCH
Q ss_pred HHHHHHHHHHHHhCCCcceEeeceEEecCCCHHHHHHHHHHHHHcCCcEEee
Q 019890 245 KQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTF 296 (334)
Q Consensus 245 e~sL~vL~~ak~~~p~Gl~tkTgiMVGlGETdEE~~etl~~Lre~gvd~vti 296 (334)
+...++++.+|+...--+.+|...-+ +.+++.+..+.+.+.|+|.+.+
T Consensus 144 e~~~~iv~~vr~~~~~Pv~vKi~~~~----~~~~~~~~a~~~~~~G~d~i~v 191 (311)
T 1jub_A 144 EATEKLLKEVFTFFTKPLGVKLPPYF----DLVHFDIMAEILNQFPLTYVNS 191 (311)
T ss_dssp HHHHHHHHHHTTTCCSCEEEEECCCC----SHHHHHHHHHHHTTSCCCEEEE
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCCC----CHHHHHHHHHHHHHcCCcEEEe
No 126
>4eiv_A Deoxyribose-phosphate aldolase; chemotherapy, brain cysts, bradyzoite, structural genomics, for structural genomics of infectious diseases; 1.37A {Toxoplasma gondii} PDB: 3qyq_A*
Probab=38.01 E-value=43 Score=31.62 Aligned_cols=67 Identities=16% Similarity=0.230 Sum_probs=41.3
Q ss_pred CCCcccCCCCCCCCCCchhHHHHHHHHHHCCCcEEEEeeecCCCCCC---chHHHHHHHHHHHHhhCCCCceeee
Q 019890 143 CRFCNVKTSRAPPPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLAD---QGSGHFAQTVRKLKELKPNMLIEAL 214 (334)
Q Consensus 143 C~FC~V~~~r~p~~ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d---~Ga~~fa~lIr~Ik~~~P~i~vE~L 214 (334)
|+-.++|.+. .+.+.-..+++.+.+.|.+||=+. .|...+.+ +..+.+.+-|+++++...+..+.++
T Consensus 87 ~tVigFP~G~----~~~e~K~~Ea~~Av~~GAdEIDmV-inig~lk~~~~g~~~~V~~eI~~v~~a~~~~~lKVI 156 (297)
T 4eiv_A 87 CAAVNFPEGT----GTPDTVSLEAVGALKDGADEIECL-IDWRRMNENVADGESRIRLLVSEVKKVVGPKTLKVV 156 (297)
T ss_dssp EEEESTTTCC----CCHHHHHHHHHHHHHTTCSEEEEE-CCTHHHHHCHHHHHHHHHHHHHHHHHHHTTSEEEEE
T ss_pred EEEecCCCCC----CCHHHHHHHHHHHHHcCCCEEEee-eeHHHHhcccCCcHHHHHHHHHHHHHHhcCCceEEE
Confidence 4445566643 456777778888888999998442 23222344 4556667777777776655444443
No 127
>3b8i_A PA4872 oxaloacetate decarboxylase; alpha/beta barrel, helix swapping, lyase; 1.90A {Pseudomonas aeruginosa}
Probab=37.87 E-value=1.6e+02 Score=27.41 Aligned_cols=82 Identities=12% Similarity=0.081 Sum_probs=60.9
Q ss_pred CCCHHHHHHHHHHHHHhCCCcceEeeceEEecCCCHHHHHHHHHHHHHcCCcEEeeccCcCCC-CCCCcccccCCHHHHH
Q 019890 241 RANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRPS-KRHMPVSEYITPEAFE 319 (334)
Q Consensus 241 ~~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGlGETdEE~~etl~~Lre~gvd~vtigqYlrP~-~~h~~v~~yv~P~~f~ 319 (334)
..++++.+..++.+.+..+ +.+-.|+=.||| +.+++.++.+.|.+.|++-|+|=--..|. ..|++-. .++.+++.
T Consensus 64 ~vt~~em~~~~~~I~r~~~--~PviaD~d~Gyg-~~~~~~~~v~~l~~aGa~gv~iED~~~pKrcgh~~gk-l~~~~e~~ 139 (287)
T 3b8i_A 64 LITLSEFVEQATRIGRVAR--LPVIADADHGYG-NALNVMRTVVELERAGIAALTIEDTLLPAQFGRKSTD-LICVEEGV 139 (287)
T ss_dssp CSCHHHHHHHHHHHHTTCS--SCEEEECTTCSS-SHHHHHHHHHHHHHHTCSEEEEECBCCSCCTTTCTTC-BCCHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCC--CCEEEECCCCCC-CHHHHHHHHHHHHHhCCeEEEEcCCCCccccCCCCCC-ccCHHHHH
Confidence 3678888888888877544 356777777888 89999999999999999999994333343 4588877 88888775
Q ss_pred HHHHHHH
Q 019890 320 RYRALGM 326 (334)
Q Consensus 320 ~~~~~a~ 326 (334)
.-=+.+.
T Consensus 140 ~~I~aa~ 146 (287)
T 3b8i_A 140 GKIRAAL 146 (287)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4433333
No 128
>2ekc_A AQ_1548, tryptophan synthase alpha chain; structural genomics, lyase, NPPSFA, national project on PROT structural and functional analyses; 2.00A {Aquifex aeolicus}
Probab=37.75 E-value=2.2e+02 Score=25.40 Aligned_cols=58 Identities=17% Similarity=0.162 Sum_probs=38.5
Q ss_pred CCCchhHHHHHHHHHHCCCcEEEEeeecCCCCCCchH---------------HHHHHHHHHHHhhCCCCceee
Q 019890 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGS---------------GHFAQTVRKLKELKPNMLIEA 213 (334)
Q Consensus 156 ~ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga---------------~~fa~lIr~Ik~~~P~i~vE~ 213 (334)
..+.++-.+.++++.+.|++-|-|-.--.|.+.|+.. ....+++++|++..|++.+-+
T Consensus 27 ~p~~~~~~~~~~~l~~~G~D~IElG~P~sdP~adgp~i~~a~~~al~~G~~~~~~~~~v~~ir~~~~~~Pi~~ 99 (262)
T 2ekc_A 27 YPDYETSLKAFKEVLKNGTDILEIGFPFSDPVADGPTIQVAHEVALKNGIRFEDVLELSETLRKEFPDIPFLL 99 (262)
T ss_dssp SSCHHHHHHHHHHHHHTTCSEEEEECCCSCCTTSCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTSCEEE
T ss_pred CCChHHHHHHHHHHHHcCCCEEEECCCCCCcccccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhcCCCCEEE
Confidence 4566788999999999999988873322333444431 234478999988765554433
No 129
>3l5l_A Xenobiotic reductase A; TIM barrel, oxidoreductase; HET: BU3 FMN; 1.03A {Pseudomonas putida} SCOP: c.1.4.0 PDB: 3l5m_A* 3n19_B* 3n16_A* 3l68_A* 3l67_A* 3l65_A* 3l66_A* 3n14_A* 2h8z_A* 2h90_A* 2h8x_A*
Probab=37.70 E-value=37 Score=32.25 Aligned_cols=51 Identities=16% Similarity=0.354 Sum_probs=35.2
Q ss_pred HHHHHHHHHhCCCcce--Eeece--EEecC-CCHHHHHHHHHHHHHcCCcEEeecc
Q 019890 248 LDVLMMAKDYVPAGTL--TKTSI--MLGCG-ETPDQVVSTMEKVRAAGVDVMTFGQ 298 (334)
Q Consensus 248 L~vL~~ak~~~p~Gl~--tkTgi--MVGlG-ETdEE~~etl~~Lre~gvd~vtigq 298 (334)
+++++.+|+..+..+. ++-+. ...-| .+.+|..+.++.|.+.|+|.+++..
T Consensus 212 ~eiv~aVr~avg~d~pV~vRis~~~~~~~G~~~~~~~~~la~~L~~~Gvd~i~vs~ 267 (363)
T 3l5l_A 212 LETLAAVREVWPENLPLTARFGVLEYDGRDEQTLEESIELARRFKAGGLDLLSVSV 267 (363)
T ss_dssp HHHHHHHHTTSCTTSCEEEEEEEECSSSCHHHHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred HHHHHHHHHHcCCCceEEEEecchhcCCCCCCCHHHHHHHHHHHHHcCCCEEEEec
Confidence 6788888887653232 22221 11114 6789999999999999999999863
No 130
>3eoo_A Methylisocitrate lyase; seattle structural genomics center for infectious disease, ssgcid; 2.90A {Burkholderia pseudomallei 1655} SCOP: c.1.12.7
Probab=37.52 E-value=2.1e+02 Score=26.63 Aligned_cols=77 Identities=14% Similarity=0.107 Sum_probs=59.1
Q ss_pred CCHHHHHHHHHHHHHhCCCcceEeeceEEecCCCHHHHHHHHHHHHHcCCcEEeeccCcC-CCCCCCcccccCCHHHHHH
Q 019890 242 ANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMR-PSKRHMPVSEYITPEAFER 320 (334)
Q Consensus 242 ~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGlGETdEE~~etl~~Lre~gvd~vtigqYlr-P~~~h~~v~~yv~P~~f~~ 320 (334)
.++++.+..++.+.+..+ +.+-.|+=.|+| +.+++.++.+.+.+.|+.-|+|=--.. +...|++-...++.++|..
T Consensus 66 vt~~em~~~~~~I~r~~~--~PviaD~d~Gyg-~~~~v~~~v~~l~~aGaagv~iEDq~~~k~cGh~~gk~l~~~~e~~~ 142 (298)
T 3eoo_A 66 STMDDVLVDANRITNATN--LPLLVDIDTGWG-GAFNIARTIRSFIKAGVGAVHLEDQVGQKRCGHRPGKECVPAGEMVD 142 (298)
T ss_dssp CCHHHHHHHHHHHHHHCC--SCEEEECTTCSS-SHHHHHHHHHHHHHTTCSEEEEECBCCCCCTTCCCCCCBCCHHHHHH
T ss_pred CCHHHHHHHHHHHHhhcC--CeEEEECCCCCC-CHHHHHHHHHHHHHhCCeEEEECCCCCCcccCCCCCCeecCHHHHHH
Confidence 567777777777776543 456666667888 889999999999999999999965443 3446898888899887655
Q ss_pred H
Q 019890 321 Y 321 (334)
Q Consensus 321 ~ 321 (334)
-
T Consensus 143 r 143 (298)
T 3eoo_A 143 R 143 (298)
T ss_dssp H
T ss_pred H
Confidence 3
No 131
>3tak_A DHDPS, dihydrodipicolinate synthase; TIM barrel, lysine biosynthesis, pyruvate, lyase; 1.42A {Acinetobacter baumannii} PDB: 3pud_A* 3pue_A* 3pul_A 3rk8_A 3tce_A* 3tdf_A 3u8g_A 3uqn_A 4dxv_A
Probab=36.84 E-value=1.1e+02 Score=28.06 Aligned_cols=136 Identities=12% Similarity=0.137 Sum_probs=82.4
Q ss_pred CCCCchhHHHHHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhCCCCceeeeeccccccccccchhhHHHHH
Q 019890 155 PPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVAKSGLNVFAHNIETVEELQ 234 (334)
Q Consensus 155 ~~ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~P~i~vE~Ll~~ag~dv~~HnlETv~~l~ 234 (334)
..+|.+...+.++.+.+.|++-+++.|-+.. ......+.-.++++.+.+...+ ..-++.+-
T Consensus 17 g~iD~~~l~~lv~~li~~Gv~gl~~~GttGE-~~~Ls~~Er~~v~~~~~~~~~g----------r~pviaGv-------- 77 (291)
T 3tak_A 17 GGVDWKSLEKLVEWHIEQGTNSIVAVGTTGE-ASTLSMEEHTQVIKEIIRVANK----------RIPIIAGT-------- 77 (291)
T ss_dssp SCBCHHHHHHHHHHHHHHTCCEEEESSTTTT-GGGSCHHHHHHHHHHHHHHHTT----------SSCEEEEC--------
T ss_pred CCcCHHHHHHHHHHHHHCCCCEEEECccccc-cccCCHHHHHHHHHHHHHHhCC----------CCeEEEeC--------
Confidence 4689999999999999999999988775431 1111223345566665553211 12233322
Q ss_pred HhhcCCCCCHHHHHHHHHHHHHhCCCcceEeeceEEecCCCHHHHHHHHHHHHHcCCcEEeeccCcCCCCCCCcccccCC
Q 019890 235 SAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMPVSEYIT 314 (334)
Q Consensus 235 ~~Vr~r~~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGlGETdEE~~etl~~Lre~gvd~vtigqYlrP~~~h~~v~~yv~ 314 (334)
-..+.++.++..+++++.--+|+.+-+-.. +.-|++++.+.++.+.+.= -++|.-|--|..... .++
T Consensus 78 -----g~~~t~~ai~la~~a~~~Gadavlv~~P~y--~~~~~~~l~~~f~~ia~a~--~lPiilYn~P~~tg~----~l~ 144 (291)
T 3tak_A 78 -----GANSTREAIELTKAAKDLGADAALLVTPYY--NKPTQEGLYQHYKAIAEAV--ELPLILYNVPGRTGV----DLS 144 (291)
T ss_dssp -----CCSSHHHHHHHHHHHHHHTCSEEEEECCCS--SCCCHHHHHHHHHHHHHHC--CSCEEEEECHHHHSC----CCC
T ss_pred -----CCCCHHHHHHHHHHHHhcCCCEEEEcCCCC--CCCCHHHHHHHHHHHHHhc--CCCEEEEecccccCC----CCC
Confidence 234678888999999987434333322221 2558999999999998752 356666766643211 345
Q ss_pred HHHHHHHH
Q 019890 315 PEAFERYR 322 (334)
Q Consensus 315 P~~f~~~~ 322 (334)
|+.+.++.
T Consensus 145 ~~~~~~La 152 (291)
T 3tak_A 145 NDTAVRLA 152 (291)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHH
Confidence 65555443
No 132
>1tx2_A DHPS, dihydropteroate synthase; folate biosynthesis, pterine, MA transferase; HET: 680; 1.83A {Bacillus anthracis} SCOP: c.1.21.1 PDB: 1tww_A* 1twz_A* 1tx0_A* 1tws_A* 3h21_A* 3h22_A* 3h23_A* 3h24_A* 3h26_A* 3h2a_A* 3h2c_A* 3h2e_A* 3h2f_A* 3h2m_A* 3h2n_A* 3h2o_A* 3tya_A* 3tyb_A* 3tyc_A* 3tyd_A* ...
Probab=36.81 E-value=1e+02 Score=28.77 Aligned_cols=129 Identities=15% Similarity=0.239 Sum_probs=70.9
Q ss_pred CCchhHHHHHHHHHHCCCcEEEEeeec-CCCCC----CchHHHHHHHHHHHHhhCCC--Cceeee-------eccccccc
Q 019890 157 PDPDEPTNVAEAIASWGLDYVVITSVD-RDDLA----DQGSGHFAQTVRKLKELKPN--MLIEAL-------VAKSGLNV 222 (334)
Q Consensus 157 ld~~Ep~~~A~av~~~GlkeVVLTSv~-rdDl~----d~Ga~~fa~lIr~Ik~~~P~--i~vE~L-------l~~ag~dv 222 (334)
.+.+++.+.|+...+.|.+.|-|-+.. |.... +.....+..+|++|++.. + ++|... ..++|.++
T Consensus 60 ~~~~~a~~~a~~~v~~GAdiIDIGgeStrPga~~v~~~eE~~RvvpvI~~l~~~~-~vpiSIDT~~~~V~~aAl~aGa~i 138 (297)
T 1tx2_A 60 NEVDAAVRHAKEMRDEGAHIIDIGGESTRPGFAKVSVEEEIKRVVPMIQAVSKEV-KLPISIDTYKAEVAKQAIEAGAHI 138 (297)
T ss_dssp HHHHHHHHHHHHHHHTTCSEEEEESCC----CCCCCHHHHHHHHHHHHHHHHHHS-CSCEEEECSCHHHHHHHHHHTCCE
T ss_pred CCHHHHHHHHHHHHHcCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHhcC-CceEEEeCCCHHHHHHHHHcCCCE
Confidence 568999999999999999998886522 21111 112344556667777643 3 333332 33457777
Q ss_pred cccc-hhh-HHHHHHhhc----------CC-CCCH--------HHHHHHHHHHHHhCCCcce---EeeceEEecCCCHHH
Q 019890 223 FAHN-IET-VEELQSAVR----------DH-RANF--------KQSLDVLMMAKDYVPAGTL---TKTSIMLGCGETPDQ 278 (334)
Q Consensus 223 ~~Hn-lET-v~~l~~~Vr----------~r-~~ty--------e~sL~vL~~ak~~~p~Gl~---tkTgiMVGlGETdEE 278 (334)
+|.- -+. -+.+.+-+. .+ ...| +...+.++.+.+. |+. +--+--+|||-|.++
T Consensus 139 INdvsg~~~d~~m~~~aa~~g~~vVlmh~~G~p~y~d~v~ev~~~l~~~i~~a~~~---GI~~~~IilDPg~Gfgk~~~~ 215 (297)
T 1tx2_A 139 INDIWGAKAEPKIAEVAAHYDVPIILMHNRDNMNYRNLMADMIADLYDSIKIAKDA---GVRDENIILDPGIGFAKTPEQ 215 (297)
T ss_dssp EEETTTTSSCTHHHHHHHHHTCCEEEECCCSCCCCSSHHHHHHHHHHHHHHHHHHT---TCCGGGEEEECCTTSSCCHHH
T ss_pred EEECCCCCCCHHHHHHHHHhCCcEEEEeCCCCCCcchHHHHHHHHHHHHHHHHHHc---CCChhcEEEeCCCCcCCCHHH
Confidence 7652 111 123322211 01 1112 3333555566654 553 444445688999997
Q ss_pred HHHHHHHHHHc
Q 019890 279 VVSTMEKVRAA 289 (334)
Q Consensus 279 ~~etl~~Lre~ 289 (334)
-.++|+.|+++
T Consensus 216 n~~ll~~l~~l 226 (297)
T 1tx2_A 216 NLEAMRNLEQL 226 (297)
T ss_dssp HHHHHHTGGGG
T ss_pred HHHHHHHHHHH
Confidence 77777777654
No 133
>2yw3_A 4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deoxyphosphogluconate aldolase; structural genomics, NPPSFA; 1.67A {Thermus thermophilus} PDB: 2yw4_A
Probab=36.78 E-value=2.1e+02 Score=24.74 Aligned_cols=101 Identities=18% Similarity=0.255 Sum_probs=60.6
Q ss_pred CCchhHHHHHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhCCCCceeee----------eccccccccccc
Q 019890 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEAL----------VAKSGLNVFAHN 226 (334)
Q Consensus 157 ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~P~i~vE~L----------l~~ag~dv~~Hn 226 (334)
.++++..+.++++.+.|++-|-++--+ + .-.+.|+.+++ |++.+..= ..++|.|.+ |.
T Consensus 22 ~~~~~~~~~~~~l~~gGv~~iel~~k~----~-----~~~~~i~~~~~--~~~~~gag~vl~~d~~~~A~~~GAd~v-~~ 89 (207)
T 2yw3_A 22 RGGEDLLGLARVLEEEGVGALEITLRT----E-----KGLEALKALRK--SGLLLGAGTVRSPKEAEAALEAGAAFL-VS 89 (207)
T ss_dssp CSCCCHHHHHHHHHHTTCCEEEEECSS----T-----HHHHHHHHHTT--SSCEEEEESCCSHHHHHHHHHHTCSEE-EE
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeCCC----h-----HHHHHHHHHhC--CCCEEEeCeEeeHHHHHHHHHcCCCEE-Ec
Confidence 467888999999999999988886321 1 12467777776 55432110 222333332 11
Q ss_pred hhhHHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCcceEeeceEEecCCCHHHHHHHHHHHHHcCCcEEeecc
Q 019890 227 IETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQ 298 (334)
Q Consensus 227 lETv~~l~~~Vr~r~~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGlGETdEE~~etl~~Lre~gvd~vtigq 298 (334)
+..+ .++++.+++. |+ .+|.|. .|.+|+.+.+ +.|+|++.+|+
T Consensus 90 -------------~~~d----~~v~~~~~~~---g~----~~i~G~-~t~~e~~~A~----~~Gad~v~~fp 132 (207)
T 2yw3_A 90 -------------PGLL----EEVAALAQAR---GV----PYLPGV-LTPTEVERAL----ALGLSALKFFP 132 (207)
T ss_dssp -------------SSCC----HHHHHHHHHH---TC----CEEEEE-CSHHHHHHHH----HTTCCEEEETT
T ss_pred -------------CCCC----HHHHHHHHHh---CC----CEEecC-CCHHHHHHHH----HCCCCEEEEec
Confidence 2222 4566666664 32 356673 5777776554 56999999974
No 134
>3tr9_A Dihydropteroate synthase; biosynthesis of cofactors, prosthetic groups, and carriers, transferase; HET: PT1; 1.90A {Coxiella burnetii}
Probab=36.77 E-value=1.5e+02 Score=28.09 Aligned_cols=50 Identities=14% Similarity=0.110 Sum_probs=33.0
Q ss_pred CCCchhHHHHHHHHHHCCCcEEEEeee-cCCCCC--------CchHHHHHHHHHHHHhh
Q 019890 156 PPDPDEPTNVAEAIASWGLDYVVITSV-DRDDLA--------DQGSGHFAQTVRKLKEL 205 (334)
Q Consensus 156 ~ld~~Ep~~~A~av~~~GlkeVVLTSv-~rdDl~--------d~Ga~~fa~lIr~Ik~~ 205 (334)
..+++++.+.|+...+.|.+.|-|=+. .|..-. +.....+..+|++|++.
T Consensus 45 ~~~~~~al~~A~~~v~~GAdIIDIGgeSTrPga~~~~~~V~~~eE~~Rv~pvI~~l~~~ 103 (314)
T 3tr9_A 45 HLDLNSALRTAEKMVDEGADILDIGGEATNPFVDIKTDSPSTQIELDRLLPVIDAIKKR 103 (314)
T ss_dssp CCSHHHHHHHHHHHHHTTCSEEEEECCCSCTTC-----CHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCcccccCCCCHHHHHHHHHHHHHHHHhh
Confidence 467899999999999999998877442 232111 11223466677777765
No 135
>1nvm_A HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: a.5.7.1 c.1.10.5
Probab=36.64 E-value=59 Score=30.59 Aligned_cols=54 Identities=7% Similarity=0.151 Sum_probs=41.2
Q ss_pred CCCchhHHHHHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhCC-CCceee
Q 019890 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKP-NMLIEA 213 (334)
Q Consensus 156 ~ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~P-~i~vE~ 213 (334)
..+++.+.++++++.+.|+..|.|.....- .-...+.++|++|++..| ++.+.+
T Consensus 145 ~~~~e~~~~ia~~~~~~Ga~~i~l~DT~G~----~~P~~v~~lv~~l~~~~~~~~pi~~ 199 (345)
T 1nvm_A 145 MIPAEKLAEQGKLMESYGATCIYMADSGGA----MSMNDIRDRMRAFKAVLKPETQVGM 199 (345)
T ss_dssp SSCHHHHHHHHHHHHHHTCSEEEEECTTCC----CCHHHHHHHHHHHHHHSCTTSEEEE
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEECCCcCc----cCHHHHHHHHHHHHHhcCCCceEEE
Confidence 356899999999999999999988654421 125678999999999886 555544
No 136
>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A*
Probab=36.57 E-value=2e+02 Score=31.78 Aligned_cols=148 Identities=14% Similarity=0.128 Sum_probs=82.4
Q ss_pred CCCchhHHHHHHHHHHCC--CcEEEEeeecCCC-----CCCchHHHHHHHHHHHHhhCCCCceeeeeccc---ccccccc
Q 019890 156 PPDPDEPTNVAEAIASWG--LDYVVITSVDRDD-----LADQGSGHFAQTVRKLKELKPNMLIEALVAKS---GLNVFAH 225 (334)
Q Consensus 156 ~ld~~Ep~~~A~av~~~G--lkeVVLTSv~rdD-----l~d~Ga~~fa~lIr~Ik~~~P~i~vE~Ll~~a---g~dv~~H 225 (334)
.++.++..++|+++.+.| +..|-+.|+..-| +... . .+-++++++..|++.+..++... |...++-
T Consensus 569 ~~~~~dkl~ia~~L~~~gv~~~~iE~~gga~f~~~~~f~~~~---p-~e~l~~~~~~~~~~~~~~l~R~~n~vg~~~~~~ 644 (1165)
T 2qf7_A 569 RMRTYDIARIAGTYSHALPNLLSLECWGGATFDVSMRFLTED---P-WERLALIREGAPNLLLQMLLRGANGVGYTNYPD 644 (1165)
T ss_dssp CCCHHHHHHHHHHHHHHCTTCSEEEEEETTHHHHHHHHHCCC---H-HHHHHHHHHHCTTSEEEEEEETTTBTCSSCCCH
T ss_pred cCCHHHHHHHHHHHHHhCCCceEEEeCCCCccHHHHhhcCCC---H-HHHHHHHHHHchhhHHHHHhccccccccccCCc
Confidence 488999999999999995 4446664332100 0000 1 24566677777876665543221 1111222
Q ss_pred ch--hhHHHHHHh----hc--CCCCCHHHHHHHHHHHHHhCCCcceEeeceEEe--c-----C-CCHHHHHHHHHHHHHc
Q 019890 226 NI--ETVEELQSA----VR--DHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLG--C-----G-ETPDQVVSTMEKVRAA 289 (334)
Q Consensus 226 nl--ETv~~l~~~----Vr--~r~~tye~sL~vL~~ak~~~p~Gl~tkTgiMVG--l-----G-ETdEE~~etl~~Lre~ 289 (334)
|. +.+++.... +| +.-.+.+.....++.+++. |..+.-.+.+. | | -+.+.+.+.++.+.++
T Consensus 645 ~~~~~~i~~a~~~g~d~irif~sl~~~~~~~~~i~~~~~~---g~~v~~~i~~~~~~~d~~r~~~~~~~~~~~~~~~~~~ 721 (1165)
T 2qf7_A 645 NVVKYFVRQAAKGGIDLFRVFDCLNWVENMRVSMDAIAEE---NKLCEAAICYTGDILNSARPKYDLKYYTNLAVELEKA 721 (1165)
T ss_dssp HHHHHHHHHHHHHTCCEEEEECTTCCGGGGHHHHHHHHHT---TCEEEEEEECCSCTTCTTSGGGCHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHhcCcCEEEEEeeHHHHHHHHHHHHHHHhc---cceEEEEEEEeccccCCCCCCCCHHHHHHHHHHHHHc
Confidence 21 112222111 11 1123345556777888885 55555554443 1 1 3678899999999999
Q ss_pred CCcEEeeccCcCCCCCCCcccccCCHHHHHH
Q 019890 290 GVDVMTFGQYMRPSKRHMPVSEYITPEAFER 320 (334)
Q Consensus 290 gvd~vtigqYlrP~~~h~~v~~yv~P~~f~~ 320 (334)
|++.+.|.- -..+.+|.++..
T Consensus 722 Ga~~i~l~D----------T~G~~~P~~~~~ 742 (1165)
T 2qf7_A 722 GAHIIAVKD----------MAGLLKPAAAKV 742 (1165)
T ss_dssp TCSEEEEEE----------TTCCCCHHHHHH
T ss_pred CCCEEEEeC----------ccCCcCHHHHHH
Confidence 999987751 224666766444
No 137
>3sr7_A Isopentenyl-diphosphate delta-isomerase; isopentenyl pyrophosphate isomerase, TIM-barrel; 2.04A {Streptococcus mutans}
Probab=36.02 E-value=36 Score=32.78 Aligned_cols=73 Identities=14% Similarity=0.130 Sum_probs=46.9
Q ss_pred cccccccccchhhHHHHHHhhcCC-CCCHHHHHHHHHHHHHhCCCcceEeeceEEecCCCHHHHHHHHHHHHHcCCcEEe
Q 019890 217 KSGLNVFAHNIETVEELQSAVRDH-RANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMT 295 (334)
Q Consensus 217 ~ag~dv~~HnlETv~~l~~~Vr~r-~~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGlGETdEE~~etl~~Lre~gvd~vt 295 (334)
..+.|.+..|+.....+ +.+. ..+++.+++.|+.+++..+.=+.+| .+|+|-+.++ .+.+.++|+|.|.
T Consensus 166 ~~~adal~ihln~~qe~---~~p~Gd~~~~~~~~~I~~l~~~~~~PVivK---~vg~g~s~e~----A~~l~~aGad~I~ 235 (365)
T 3sr7_A 166 DLQPLFLQVHINLMQEL---LMPEGEREFRSWKKHLSDYAKKLQLPFILK---EVGFGMDVKT----IQTAIDLGVKTVD 235 (365)
T ss_dssp HHCCSCEEEEECHHHHH---TSSSSCCCCHHHHHHHHHHHHHCCSCEEEE---ECSSCCCHHH----HHHHHHHTCCEEE
T ss_pred hcCCCEEEEeccccccc---cCCCCCCcHHHHHHHHHHHHHhhCCCEEEE---ECCCCCCHHH----HHHHHHcCCCEEE
Confidence 34555555554443322 3321 2457788899999998764324556 2689988765 5567789999999
Q ss_pred eccC
Q 019890 296 FGQY 299 (334)
Q Consensus 296 igqY 299 (334)
++-.
T Consensus 236 V~g~ 239 (365)
T 3sr7_A 236 ISGR 239 (365)
T ss_dssp CCCB
T ss_pred EeCC
Confidence 8643
No 138
>3m5v_A DHDPS, dihydrodipicolinate synthase; TIM barrel, csgid, amino-acid biosynthesis, diaminopimelate biosynthesis, lyase, lysine biosynthesis; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.1.10.0 PDB: 3ler_A*
Probab=35.50 E-value=1.1e+02 Score=28.12 Aligned_cols=139 Identities=12% Similarity=0.076 Sum_probs=86.4
Q ss_pred CCCCchhHHHHHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhCCCCceeeeeccccccccccchhhHHHHH
Q 019890 155 PPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVAKSGLNVFAHNIETVEELQ 234 (334)
Q Consensus 155 ~~ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~P~i~vE~Ll~~ag~dv~~HnlETv~~l~ 234 (334)
..+|.+...+.++.+.+.|++-+++.|.+.. ......+.-.++++.+.+...+. .+-++.+-
T Consensus 23 g~iD~~~l~~lv~~li~~Gv~gl~v~GttGE-~~~Ls~~Er~~v~~~~~~~~~g~---------rvpviaGv-------- 84 (301)
T 3m5v_A 23 GKVDEQSYARLIKRQIENGIDAVVPVGTTGE-SATLTHEEHRTCIEIAVETCKGT---------KVKVLAGA-------- 84 (301)
T ss_dssp TEECHHHHHHHHHHHHHTTCCEEECSSTTTT-GGGSCHHHHHHHHHHHHHHHTTS---------SCEEEEEC--------
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEECccccC-hhhCCHHHHHHHHHHHHHHhCCC---------CCeEEEeC--------
Confidence 4688999999999999999999988775431 22112233456666655542210 12233322
Q ss_pred HhhcCCCCCHHHHHHHHHHHHHhCCCcceEeeceEEecCCCHHHHHHHHHHHHHcCCcEEeeccCcCCCCCCCcccccCC
Q 019890 235 SAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMPVSEYIT 314 (334)
Q Consensus 235 ~~Vr~r~~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGlGETdEE~~etl~~Lre~gvd~vtigqYlrP~~~h~~v~~yv~ 314 (334)
-..+.++.++..+++.+.--+|+.+-+-.- +.-|++++.+.++.+.+.= -++|.-|--|.... ..++
T Consensus 85 -----g~~~t~~ai~la~~a~~~Gadavlv~~P~y--~~~s~~~l~~~f~~va~a~--~lPiilYn~P~~tg----~~l~ 151 (301)
T 3m5v_A 85 -----GSNATHEAVGLAKFAKEHGADGILSVAPYY--NKPTQQGLYEHYKAIAQSV--DIPVLLYNVPGRTG----CEIS 151 (301)
T ss_dssp -----CCSSHHHHHHHHHHHHHTTCSEEEEECCCS--SCCCHHHHHHHHHHHHHHC--SSCEEEEECHHHHS----CCCC
T ss_pred -----CCCCHHHHHHHHHHHHHcCCCEEEEcCCCC--CCCCHHHHHHHHHHHHHhC--CCCEEEEeCchhhC----cCCC
Confidence 235678888999999887333333322222 2458999999999998752 35666676665322 3567
Q ss_pred HHHHHHHHHH
Q 019890 315 PEAFERYRAL 324 (334)
Q Consensus 315 P~~f~~~~~~ 324 (334)
|+.+.++.+.
T Consensus 152 ~~~~~~La~~ 161 (301)
T 3m5v_A 152 TDTIIKLFRD 161 (301)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhc
Confidence 8777776644
No 139
>3h5d_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, schiff base, cytoplasm, diaminopimelate biosy lyase; HET: MES; 1.99A {Streptococcus pneumoniae}
Probab=35.50 E-value=1.1e+02 Score=28.39 Aligned_cols=136 Identities=10% Similarity=0.121 Sum_probs=84.9
Q ss_pred CCCCchhHHHHHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhCCCCceeeeeccccccccccchhhHHHHH
Q 019890 155 PPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVAKSGLNVFAHNIETVEELQ 234 (334)
Q Consensus 155 ~~ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~P~i~vE~Ll~~ag~dv~~HnlETv~~l~ 234 (334)
..+|.+...+.++.+.+.|++-+++.|.+. .......+...++++.+.+...+ ..-++.+-
T Consensus 23 g~iD~~~l~~lv~~li~~Gv~Gl~v~GtTG-E~~~Ls~~Er~~v~~~~~~~~~g----------rvpViaGv-------- 83 (311)
T 3h5d_A 23 GSINFDAIPALIEHLLAHHTDGILLAGTTA-ESPTLTHDEELELFAAVQKVVNG----------RVPLIAGV-------- 83 (311)
T ss_dssp SSBCTTHHHHHHHHHHHTTCCCEEESSTTT-TGGGSCHHHHHHHHHHHHHHSCS----------SSCEEEEC--------
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEECcccc-ChhhCCHHHHHHHHHHHHHHhCC----------CCcEEEeC--------
Confidence 468999999999999999999988877543 12222233445677766665322 22233322
Q ss_pred HhhcCCCCCHHHHHHHHHHHHHhCC-CcceEeeceEEecCCCHHHHHHHHHHHHHcCCcEEeeccCcCCCCCCCcccccC
Q 019890 235 SAVRDHRANFKQSLDVLMMAKDYVP-AGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMPVSEYI 313 (334)
Q Consensus 235 ~~Vr~r~~tye~sL~vL~~ak~~~p-~Gl~tkTgiMVGlGETdEE~~etl~~Lre~gvd~vtigqYlrP~~~h~~v~~yv 313 (334)
-..+.++.++..+++.+.-. +|+.+-+-.. +.-|++++.+.++.+.+.- -++|.-|--|.... ..+
T Consensus 84 -----g~~~t~~ai~la~~A~~~Ga~davlv~~P~y--~~~s~~~l~~~f~~va~a~--~lPiilYn~P~~tg----~~l 150 (311)
T 3h5d_A 84 -----GTNDTRDSIEFVKEVAEFGGFAAGLAIVPYY--NKPSQEGMYQHFKAIADAS--DLPIIIYNIPGRVV----VEL 150 (311)
T ss_dssp -----CCSSHHHHHHHHHHHHHSCCCSEEEEECCCS--SCCCHHHHHHHHHHHHHSC--SSCEEEEECHHHHS----SCC
T ss_pred -----CCcCHHHHHHHHHHHHhcCCCcEEEEcCCCC--CCCCHHHHHHHHHHHHHhC--CCCEEEEecccccC----CCC
Confidence 23467788888999988633 3333333222 2458999999999998863 35666676664321 245
Q ss_pred CHHHHHHHH
Q 019890 314 TPEAFERYR 322 (334)
Q Consensus 314 ~P~~f~~~~ 322 (334)
+|+.+.++.
T Consensus 151 ~~~~~~~La 159 (311)
T 3h5d_A 151 TPETMLRLA 159 (311)
T ss_dssp CHHHHHHHH
T ss_pred CHHHHHHHh
Confidence 666665554
No 140
>2y88_A Phosphoribosyl isomerase A; aromatic amino acid biosynthesis, TIM-barrel, His biosynthesis, tryptophan biosynthesis; HET: 2ER; 1.33A {Mycobacterium tuberculosis} PDB: 2y89_A 2y85_A*
Probab=35.33 E-value=28 Score=30.33 Aligned_cols=114 Identities=8% Similarity=0.090 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhCCCCceeee-------------eccccccccccch
Q 019890 161 EPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEAL-------------VAKSGLNVFAHNI 227 (334)
Q Consensus 161 Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~P~i~vE~L-------------l~~ag~dv~~Hnl 227 (334)
++.+.|+++.+.|++.+.+..-+ -...+...+ +.|++|++. ..+.++ +.++|.|.+.-..
T Consensus 32 d~~~~a~~~~~~Gad~i~v~~~d---~~~~~~~~~-~~i~~i~~~---~~ipv~v~ggi~~~~~~~~~l~~Gad~V~lg~ 104 (244)
T 2y88_A 32 SAVDAALGWQRDGAEWIHLVDLD---AAFGRGSNH-ELLAEVVGK---LDVQVELSGGIRDDESLAAALATGCARVNVGT 104 (244)
T ss_dssp EHHHHHHHHHHTTCSEEEEEEHH---HHTTSCCCH-HHHHHHHHH---CSSEEEEESSCCSHHHHHHHHHTTCSEEEECH
T ss_pred CHHHHHHHHHHcCCCEEEEEcCc---ccccCCChH-HHHHHHHHh---cCCcEEEECCCCCHHHHHHHHHcCCCEEEECc
Q ss_pred hhHHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCcceEeeceEE----------ecCCCHHHHHHHHHHHHHcCCcEEee
Q 019890 228 ETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIML----------GCGETPDQVVSTMEKVRAAGVDVMTF 296 (334)
Q Consensus 228 ETv~~l~~~Vr~r~~tye~sL~vL~~ak~~~p~Gl~tkTgiMV----------GlGETdEE~~etl~~Lre~gvd~vti 296 (334)
+..+.. +.+.++.+..+..+.+.-+.-+ |.-++.++..+.++.+.+.|++.+.+
T Consensus 105 ~~l~~p---------------~~~~~~~~~~g~~~~~~ld~~~~~~~~~v~~~g~~~~~~~~~e~~~~~~~~G~~~i~~ 168 (244)
T 2y88_A 105 AALENP---------------QWCARVIGEHGDQVAVGLDVQIIDGEHRLRGRGWETDGGDLWDVLERLDSEGCSRFVV 168 (244)
T ss_dssp HHHHCH---------------HHHHHHHHHHGGGEEEEEEEEEETTEEEEEEGGGTEEEEEHHHHHHHHHHTTCCCEEE
T ss_pred hHhhCh---------------HHHHHHHHHcCCCEEEEEeccccCCCCEEEECCccCCCCCHHHHHHHHHhCCCCEEEE
No 141
>1xky_A Dihydrodipicolinate synthase; TIM barrel, , lysine biosynthesis;spine, lyase; 1.94A {Bacillus anthracis} SCOP: c.1.10.1 PDB: 1xl9_A 3hij_A*
Probab=35.11 E-value=1.7e+02 Score=26.93 Aligned_cols=136 Identities=12% Similarity=0.105 Sum_probs=83.5
Q ss_pred CCCCchhHHHHHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhCCCCceeeeeccccccccccchhhHHHHH
Q 019890 155 PPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVAKSGLNVFAHNIETVEELQ 234 (334)
Q Consensus 155 ~~ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~P~i~vE~Ll~~ag~dv~~HnlETv~~l~ 234 (334)
..+|.+...+.++.+.+.|++-+++.|-+.. ......+.-.++++.+.+...+ .+-++.+-
T Consensus 28 g~iD~~~l~~lv~~li~~Gv~gl~v~GtTGE-~~~Ls~eEr~~v~~~~~~~~~g----------rvpViaGv-------- 88 (301)
T 1xky_A 28 GNIDFAKTTKLVNYLIDNGTTAIVVGGTTGE-SPTLTSEEKVALYRHVVSVVDK----------RVPVIAGT-------- 88 (301)
T ss_dssp SSBCHHHHHHHHHHHHHTTCCEEEESSTTTT-GGGSCHHHHHHHHHHHHHHHTT----------SSCEEEEC--------
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEECccccC-hhhCCHHHHHHHHHHHHHHhCC----------CceEEeCC--------
Confidence 4689999999999999999999988775431 1111223344566655543211 12223222
Q ss_pred HhhcCCCCCHHHHHHHHHHHHHhCCCcceEeeceEEecCCCHHHHHHHHHHHHHcCCcEEeeccCcCCCCCCCcccccCC
Q 019890 235 SAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMPVSEYIT 314 (334)
Q Consensus 235 ~~Vr~r~~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGlGETdEE~~etl~~Lre~gvd~vtigqYlrP~~~h~~v~~yv~ 314 (334)
-..+.++.++..+.+++.--+|+.+-+-... .-|++++.+.++.+.+.- + ++|.-|--|.... .-++
T Consensus 89 -----g~~~t~~ai~la~~A~~~Gadavlv~~P~y~--~~s~~~l~~~f~~va~a~-~-lPiilYn~P~~tg----~~l~ 155 (301)
T 1xky_A 89 -----GSNNTHASIDLTKKATEVGVDAVMLVAPYYN--KPSQEGMYQHFKAIAEST-P-LPVMLYNVPGRSI----VQIS 155 (301)
T ss_dssp -----CCSCHHHHHHHHHHHHHTTCSEEEEECCCSS--CCCHHHHHHHHHHHHHTC-S-SCEEEEECHHHHS----SCCC
T ss_pred -----CCCCHHHHHHHHHHHHhcCCCEEEEcCCCCC--CCCHHHHHHHHHHHHHhc-C-CCEEEEeCccccC----CCCC
Confidence 1346778888899998874444433333222 458999999999998852 2 5666676675321 2356
Q ss_pred HHHHHHHH
Q 019890 315 PEAFERYR 322 (334)
Q Consensus 315 P~~f~~~~ 322 (334)
|+.+.++.
T Consensus 156 ~~~~~~La 163 (301)
T 1xky_A 156 VDTVVRLS 163 (301)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66666554
No 142
>3daq_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, diaminopimelate biosynthesis, lyase, schiff B; 1.45A {Staphylococcus aureus} SCOP: c.1.10.0 PDB: 3di1_A 3di0_A
Probab=35.02 E-value=84 Score=28.79 Aligned_cols=136 Identities=13% Similarity=0.131 Sum_probs=83.3
Q ss_pred CCCchhHHHHHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhCCCCceeeeeccccccccccchhhHHHHHH
Q 019890 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVAKSGLNVFAHNIETVEELQS 235 (334)
Q Consensus 156 ~ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~P~i~vE~Ll~~ag~dv~~HnlETv~~l~~ 235 (334)
.+|.+...+.++.+.+.|++-+++.|-+.. ......+.-.++++.+.+...+ ..-++.+-
T Consensus 19 ~iD~~~l~~lv~~li~~Gv~gl~v~GttGE-~~~Lt~~Er~~v~~~~~~~~~g----------rvpviaGv--------- 78 (292)
T 3daq_A 19 KVNLEALKAHVNFLLENNAQAIIVNGTTAE-SPTLTTDEKELILKTVIDLVDK----------RVPVIAGT--------- 78 (292)
T ss_dssp EECHHHHHHHHHHHHHTTCCEEEESSGGGT-GGGSCHHHHHHHHHHHHHHHTT----------SSCEEEEC---------
T ss_pred CcCHHHHHHHHHHHHHcCCCEEEECccccc-cccCCHHHHHHHHHHHHHHhCC----------CCcEEEeC---------
Confidence 678889999999999999999988775421 1111123344556555543211 12233322
Q ss_pred hhcCCCCCHHHHHHHHHHHHHhCCCcceEeeceEEecCCCHHHHHHHHHHHHHcCCcEEeeccCcCCCCCCCcccccCCH
Q 019890 236 AVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMPVSEYITP 315 (334)
Q Consensus 236 ~Vr~r~~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGlGETdEE~~etl~~Lre~gvd~vtigqYlrP~~~h~~v~~yv~P 315 (334)
-..+.++.++..+++++.--+|+.+-+-.. +.-|++++.+.++.+.+.- -++|.-|--|... -..++|
T Consensus 79 ----g~~~t~~ai~la~~a~~~Gadavlv~~P~y--~~~~~~~l~~~f~~ia~a~--~lPiilYn~P~~t----g~~l~~ 146 (292)
T 3daq_A 79 ----GTNDTEKSIQASIQAKALGADAIMLITPYY--NKTNQRGLVKHFEAIADAV--KLPVVLYNVPSRT----NMTIEP 146 (292)
T ss_dssp ----CCSCHHHHHHHHHHHHHHTCSEEEEECCCS--SCCCHHHHHHHHHHHHHHH--CSCEEEEECHHHH----SCCCCH
T ss_pred ----CcccHHHHHHHHHHHHHcCCCEEEECCCCC--CCCCHHHHHHHHHHHHHhC--CCCEEEEeccccc----CCCCCH
Confidence 235678889999999987444333333222 2458999999999998752 3566667666432 224567
Q ss_pred HHHHHHHH
Q 019890 316 EAFERYRA 323 (334)
Q Consensus 316 ~~f~~~~~ 323 (334)
+.+.++.+
T Consensus 147 ~~~~~La~ 154 (292)
T 3daq_A 147 ETVEILSQ 154 (292)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHhc
Confidence 66666543
No 143
>2a4a_A Deoxyribose-phosphate aldolase; lyase, TIM beta/alpha barrel, DEOC, DERA, structur genomics, structural genomics consortium, SGC; 1.84A {Plasmodium yoelii yoelii} SCOP: c.1.10.1
Probab=34.55 E-value=1.5e+02 Score=27.64 Aligned_cols=67 Identities=12% Similarity=0.151 Sum_probs=39.1
Q ss_pred CCCcccCCCCCCCCCCchhHHHHHHHHHHCCCcEEEEeeecCCCCCCchHH---HHHHHHHHHHhhCCCCceeee
Q 019890 143 CRFCNVKTSRAPPPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSG---HFAQTVRKLKELKPNMLIEAL 214 (334)
Q Consensus 143 C~FC~V~~~r~p~~ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~---~fa~lIr~Ik~~~P~i~vE~L 214 (334)
|+-.++|.+. .+.+....+++.+.+.|.++|-+.= |...+.++..+ .+.+-|++|++..++..+.++
T Consensus 93 ~tVigFP~G~----~~~~~Kv~E~~~Av~~GAdEIDmVi-nig~lksg~~~~~~~v~~eI~~v~~a~~~~~lKVI 162 (281)
T 2a4a_A 93 ACVINFPYGT----DSMEKVLNDTEKALDDGADEIDLVI-NYKKIIENTDEGLKEATKLTQSVKKLLTNKILKVI 162 (281)
T ss_dssp EEEESTTTCC----SCHHHHHHHHHHHHHHTCSEEEEEC-CHHHHHHSHHHHHHHHHHHHHHHHTTCTTSEEEEE
T ss_pred EEEeCCCCCC----CCHHHHHHHHHHHHHcCCCEEEEec-chHhhhCCChhHHHHHHHHHHHHHHHhcCCceEEE
Confidence 4445566543 4566677888888889999985532 21112232234 566677777776655444333
No 144
>3nvt_A 3-deoxy-D-arabino-heptulosonate 7-phosphate synth; bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismat listeria monocytogenes EGD-E; 1.95A {Listeria monocytogenes} PDB: 3tfc_A*
Probab=34.54 E-value=1.4e+02 Score=28.91 Aligned_cols=59 Identities=20% Similarity=0.333 Sum_probs=44.0
Q ss_pred eEEec--CCCHHHHHHHHHHHHHcCCcEEeeccCcCCCCCCCcc-cccCCHHHHHHHHHHHHHhh
Q 019890 268 IMLGC--GETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMPV-SEYITPEAFERYRALGMEMV 329 (334)
Q Consensus 268 iMVGl--GETdEE~~etl~~Lre~gvd~vtigqYlrP~~~h~~v-~~yv~P~~f~~~~~~a~~~~ 329 (334)
+|+|- .|+.+...++.+.++++|++.|-++.|- |.. .|- .+-...+.+..+++++.++|
T Consensus 145 ~Iigpcsves~e~a~~~a~~~k~aGa~~vk~q~fk-prt--s~~~f~gl~~egl~~L~~~~~~~G 206 (385)
T 3nvt_A 145 FVFGPCSVESYEQVAAVAESIKAKGLKLIRGGAFK-PRT--SPYDFQGLGLEGLKILKRVSDEYG 206 (385)
T ss_dssp EEEECSBCCCHHHHHHHHHHHHHTTCCEEECBSSC-CCS--STTSCCCCTHHHHHHHHHHHHHHT
T ss_pred EEEEeCCcCCHHHHHHHHHHHHHcCCCeEEccccc-CCC--ChHhhcCCCHHHHHHHHHHHHHcC
Confidence 66665 6899999999999999999999998884 322 221 12245677888888887764
No 145
>3na8_A Putative dihydrodipicolinate synthetase; lyase; HET: MSE; 1.85A {Pseudomonas aeruginosa}
Probab=34.22 E-value=1.3e+02 Score=27.84 Aligned_cols=135 Identities=10% Similarity=0.003 Sum_probs=83.7
Q ss_pred CCCCchhHHHHHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhCCCCceeeeeccccccccccchhhHHHHH
Q 019890 155 PPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVAKSGLNVFAHNIETVEELQ 234 (334)
Q Consensus 155 ~~ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~P~i~vE~Ll~~ag~dv~~HnlETv~~l~ 234 (334)
..+|.+...+.++.+.+.|++-+++.|.+.. ......+.-.++++.+.+...+ .+-|+.+-
T Consensus 40 g~iD~~~l~~lv~~li~~Gv~Gi~v~GtTGE-~~~Ls~~Er~~v~~~~v~~~~g----------rvpViaGv-------- 100 (315)
T 3na8_A 40 GGLDLPALGRSIERLIDGGVHAIAPLGSTGE-GAYLSDPEWDEVVDFTLKTVAH----------RVPTIVSV-------- 100 (315)
T ss_dssp SSBCHHHHHHHHHHHHHTTCSEEECSSGGGT-GGGSCHHHHHHHHHHHHHHHTT----------SSCBEEEC--------
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEECccccC-hhhCCHHHHHHHHHHHHHHhCC----------CCcEEEec--------
Confidence 4689999999999999999999988775421 1111223345566665553211 12233322
Q ss_pred HhhcCCCCCHHHHHHHHHHHHHhCCCcceEeeceEEecCCCHHHHHHHHHHHHHcCCcEEeeccCcCCCCCCCcccccCC
Q 019890 235 SAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMPVSEYIT 314 (334)
Q Consensus 235 ~~Vr~r~~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGlGETdEE~~etl~~Lre~gvd~vtigqYlrP~~~h~~v~~yv~ 314 (334)
-..+.++.++..+.+.+.--+|+.+-+-.. +.-|++++.+.++.+.+.= + ++|.-|--|.... ..++
T Consensus 101 -----g~~~t~~ai~la~~A~~~Gadavlv~~P~y--~~~s~~~l~~~f~~va~a~-~-lPiilYn~P~~tg----~~l~ 167 (315)
T 3na8_A 101 -----SDLTTAKTVRRAQFAESLGAEAVMVLPISY--WKLNEAEVFQHYRAVGEAI-G-VPVMLYNNPGTSG----IDMS 167 (315)
T ss_dssp -----CCSSHHHHHHHHHHHHHTTCSEEEECCCCS--SCCCHHHHHHHHHHHHHHC-S-SCEEEEECHHHHS----CCCC
T ss_pred -----CCCCHHHHHHHHHHHHhcCCCEEEECCCCC--CCCCHHHHHHHHHHHHHhC-C-CcEEEEeCcchhC----cCCC
Confidence 235678888899999886333332222221 2568999999999998752 2 5676776665332 2456
Q ss_pred HHHHHHH
Q 019890 315 PEAFERY 321 (334)
Q Consensus 315 P~~f~~~ 321 (334)
|+.+.++
T Consensus 168 ~~~~~~L 174 (315)
T 3na8_A 168 VELILRI 174 (315)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7766666
No 146
>1qop_A Tryptophan synthase alpha chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.1.2.4 PDB: 1k8x_A* 1wbj_A* 2clk_A* 2j9z_A* 3cep_A* 1k8y_A* 1a5s_A* 1a50_A* 1c29_A* 1c8v_A* 1c9d_A* 1bks_A* 1cx9_A* 1fuy_A* 1cw2_A* 1k7e_A* 1k7f_A* 1k7x_A* 1k3u_A* 1k8z_A* ...
Probab=33.12 E-value=2.6e+02 Score=24.90 Aligned_cols=56 Identities=13% Similarity=0.084 Sum_probs=33.7
Q ss_pred HhhcCCCCCHHHHHHHHHHHHHhCCCcceEeeceEEecCCCHHH----HHHHHHHHHHcCCcEEeec
Q 019890 235 SAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQ----VVSTMEKVRAAGVDVMTFG 297 (334)
Q Consensus 235 ~~Vr~r~~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGlGETdEE----~~etl~~Lre~gvd~vtig 297 (334)
+.+. .+.+.+..+++++.+|+..++ +. +++|+-...- ..+.++.+.+.|+|.+.+.
T Consensus 70 ~al~-~G~~~~~~~~~v~~ir~~~~~-~P-----v~lm~y~n~v~~~g~~~~~~~~~~aGadgii~~ 129 (268)
T 1qop_A 70 RAFA-AGVTPAQCFEMLAIIREKHPT-IP-----IGLLMYANLVFNNGIDAFYARCEQVGVDSVLVA 129 (268)
T ss_dssp HHHH-TTCCHHHHHHHHHHHHHHCSS-SC-----EEEEECHHHHHTTCHHHHHHHHHHHTCCEEEET
T ss_pred HHHH-cCCCHHHHHHHHHHHHhcCCC-CC-----EEEEEcccHHHHhhHHHHHHHHHHcCCCEEEEc
Confidence 3344 466788888999999886333 22 2223311111 1466677788888887775
No 147
>3nl6_A Thiamine biosynthetic bifunctional enzyme; thiamin biosynthesis, eukaryoyes, transferase; HET: TPS ACP; 2.61A {Candida glabrata} PDB: 3nl2_A* 3nl5_A* 3nl3_A* 3nm3_A* 3nm1_A*
Probab=32.16 E-value=1.2e+02 Score=30.69 Aligned_cols=131 Identities=17% Similarity=0.170 Sum_probs=65.6
Q ss_pred chhHHHHHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhCCCCceeee-------eccccccccccchhhHH
Q 019890 159 PDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEAL-------VAKSGLNVFAHNIETVE 231 (334)
Q Consensus 159 ~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~P~i~vE~L-------l~~ag~dv~~HnlETv~ 231 (334)
..+..+.++++.+.|++.|.|--- |++. ..+.+++++|++......+.++ ..+.|.|-++-..
T Consensus 24 ~~~l~~~ve~al~~Gv~~vQlR~K---~~~~---~~~~~~a~~l~~l~~~~~v~liIND~~dlA~~~gAdGVHLgq---- 93 (540)
T 3nl6_A 24 GKTLYGQVEAGLQNGVTLVQIREK---DADT---KFFIEEALQIKELCHAHNVPLIINDRIDVAMAIGADGIHVGQ---- 93 (540)
T ss_dssp TCCHHHHHHHHHHTTCSEEEECCS---SSCT---THHHHHHHHHHHHHHHTTCCEEECSCSHHHHHTTCSEEEECT----
T ss_pred cchHHHHHHHHHHCCCCEEEEecC---CCCH---HHHHHHHHHHHHHHHhcCCEEEEeCcHHHHHHcCCCEEEECh----
Confidence 446778888888999998887322 2222 3345555555543211222232 1222333222111
Q ss_pred HHHHhhcCCCCCHHHHHHHHHHHHHhCCCcceEeeceEEec-CCCHHHHHHHHHHHHHcC---CcEEeeccCcCCCCCCC
Q 019890 232 ELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC-GETPDQVVSTMEKVRAAG---VDVMTFGQYMRPSKRHM 307 (334)
Q Consensus 232 ~l~~~Vr~r~~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGl-GETdEE~~etl~~Lre~g---vd~vtigqYlrP~~~h~ 307 (334)
.+. . +..+|+.. ..+.|+|. --|.+|..+. .+.| +|+|.+|+.. |+..+-
T Consensus 94 ----------~dl--~---~~~ar~~l------g~~~iiG~S~ht~eea~~A----~~~G~~~aDYv~~Gpvf-~T~tK~ 147 (540)
T 3nl6_A 94 ----------DDM--P---IPMIRKLV------GPDMVIGWSVGFPEEVDEL----SKMGPDMVDYIGVGTLF-PTLTKK 147 (540)
T ss_dssp ----------TSS--C---HHHHHHHH------CTTSEEEEEECSHHHHHHH----HHTCC--CCEEEESCCS-CCCCCC
T ss_pred ----------hhc--C---HHHHHHHh------CCCCEEEEECCCHHHHHHH----HHcCCCCCCEEEEcCCC-CCCCCC
Confidence 110 0 22333322 23456777 5688876653 4678 9999999765 332221
Q ss_pred ccc-ccCCHHHHHHHHHHH
Q 019890 308 PVS-EYITPEAFERYRALG 325 (334)
Q Consensus 308 ~v~-~yv~P~~f~~~~~~a 325 (334)
... .-+.++.+.++.+..
T Consensus 148 ~~~~~~~G~~~l~~i~~~~ 166 (540)
T 3nl6_A 148 NPKKAPMGTAGAIRVLDAL 166 (540)
T ss_dssp ----CCCHHHHHHHHHHHH
T ss_pred CcCCCCCCHHHHHHHHHHH
Confidence 111 223466666665543
No 148
>2ehh_A DHDPS, dihydrodipicolinate synthase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.90A {Aquifex aeolicus}
Probab=32.11 E-value=1.4e+02 Score=27.23 Aligned_cols=136 Identities=13% Similarity=0.111 Sum_probs=83.7
Q ss_pred CCCCchhHHHHHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhCCCCceeeeeccccccccccchhhHHHHH
Q 019890 155 PPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVAKSGLNVFAHNIETVEELQ 234 (334)
Q Consensus 155 ~~ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~P~i~vE~Ll~~ag~dv~~HnlETv~~l~ 234 (334)
..+|.+...+.++.+.+.|++-+++.|-+.. .+....+.-.++++.+.+...+ ..-++.+-
T Consensus 16 g~iD~~~l~~lv~~li~~Gv~gl~~~GttGE-~~~Ls~~Er~~v~~~~~~~~~g----------rvpviaGv-------- 76 (294)
T 2ehh_A 16 GEVDYEALGNLIEFHVDNGTDAILVCGTTGE-SPTLTFEEHEKVIEFAVKRAAG----------RIKVIAGT-------- 76 (294)
T ss_dssp TEECHHHHHHHHHHHHTTTCCEEEESSTTTT-GGGSCHHHHHHHHHHHHHHHTT----------SSEEEEEC--------
T ss_pred CCcCHHHHHHHHHHHHHCCCCEEEECccccC-hhhCCHHHHHHHHHHHHHHhCC----------CCcEEEec--------
Confidence 3588889999999999999999988775431 2211223344566655543221 12233322
Q ss_pred HhhcCCCCCHHHHHHHHHHHHHhCCCcceEeeceEEecCCCHHHHHHHHHHHHHcCCcEEeeccCcCCCCCCCcccccCC
Q 019890 235 SAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMPVSEYIT 314 (334)
Q Consensus 235 ~~Vr~r~~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGlGETdEE~~etl~~Lre~gvd~vtigqYlrP~~~h~~v~~yv~ 314 (334)
-..+.++.++..+++.+.--+|+.+-+-.. +.-|++++.+.++.+.+.- + ++|.-|--|.... --++
T Consensus 77 -----g~~~t~~ai~la~~A~~~Gadavlv~~P~y--~~~s~~~l~~~f~~va~a~-~-lPiilYn~P~~tg----~~l~ 143 (294)
T 2ehh_A 77 -----GGNATHEAVHLTAHAKEVGADGALVVVPYY--NKPTQRGLYEHFKTVAQEV-D-IPIIIYNIPSRTC----VEIS 143 (294)
T ss_dssp -----CCSCHHHHHHHHHHHHHTTCSEEEEECCCS--SCCCHHHHHHHHHHHHHHC-C-SCEEEEECHHHHS----CCCC
T ss_pred -----CCCCHHHHHHHHHHHHhcCCCEEEECCCCC--CCCCHHHHHHHHHHHHHhc-C-CCEEEEeCCcccC----cCCC
Confidence 134677888888999886444443333322 2459999999999988752 2 5666676665322 2467
Q ss_pred HHHHHHHH
Q 019890 315 PEAFERYR 322 (334)
Q Consensus 315 P~~f~~~~ 322 (334)
|+.+.++.
T Consensus 144 ~~~~~~La 151 (294)
T 2ehh_A 144 VDTMFKLA 151 (294)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77766664
No 149
>3eb2_A Putative dihydrodipicolinate synthetase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2., structural genomics; HET: PGE; 2.04A {Rhodopseudomonas palustris} SCOP: c.1.10.0
Probab=32.04 E-value=1.4e+02 Score=27.33 Aligned_cols=136 Identities=13% Similarity=0.111 Sum_probs=84.7
Q ss_pred CCCCchhHHHHHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhCCCCceeeeeccccccccccchhhHHHHH
Q 019890 155 PPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVAKSGLNVFAHNIETVEELQ 234 (334)
Q Consensus 155 ~~ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~P~i~vE~Ll~~ag~dv~~HnlETv~~l~ 234 (334)
..+|.+...+.++.+.+.|++-+++.|.+. .......+.-.++++.+.+...+ .+-++.+-
T Consensus 20 g~iD~~~l~~lv~~li~~Gv~gl~v~GttG-E~~~Ls~~Er~~v~~~~~~~~~g----------rvpviaGv-------- 80 (300)
T 3eb2_A 20 GRVRADVMGRLCDDLIQAGVHGLTPLGSTG-EFAYLGTAQREAVVRATIEAAQR----------RVPVVAGV-------- 80 (300)
T ss_dssp SCBCHHHHHHHHHHHHHTTCSCBBTTSGGG-TGGGCCHHHHHHHHHHHHHHHTT----------SSCBEEEE--------
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEECcccc-CccccCHHHHHHHHHHHHHHhCC----------CCcEEEeC--------
Confidence 468999999999999999999888766542 11111223344566655553221 12233322
Q ss_pred HhhcCCCCCHHHHHHHHHHHHHhCCCcceEeeceEEecCCCHHHHHHHHHHHHHcCCcEEeeccCcCCCCCCCcccccCC
Q 019890 235 SAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMPVSEYIT 314 (334)
Q Consensus 235 ~~Vr~r~~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGlGETdEE~~etl~~Lre~gvd~vtigqYlrP~~~h~~v~~yv~ 314 (334)
-..+.++.++..+++.+.--+|+.+-+-.. +.-|++++.+.++.+.+.= + ++|.-|--|..... .++
T Consensus 81 -----g~~~t~~ai~la~~a~~~Gadavlv~~P~y--~~~~~~~l~~~f~~va~a~-~-lPiilYn~P~~tg~----~l~ 147 (300)
T 3eb2_A 81 -----ASTSVADAVAQAKLYEKLGADGILAILEAY--FPLKDAQIESYFRAIADAV-E-IPVVIYTNPQFQRS----DLT 147 (300)
T ss_dssp -----EESSHHHHHHHHHHHHHHTCSEEEEEECCS--SCCCHHHHHHHHHHHHHHC-S-SCEEEEECTTTCSS----CCC
T ss_pred -----CCCCHHHHHHHHHHHHHcCCCEEEEcCCCC--CCCCHHHHHHHHHHHHHHC-C-CCEEEEECccccCC----CCC
Confidence 134677888888899887444333333222 2569999999999998752 2 67777877865433 356
Q ss_pred HHHHHHHH
Q 019890 315 PEAFERYR 322 (334)
Q Consensus 315 P~~f~~~~ 322 (334)
|+.+.++.
T Consensus 148 ~~~~~~La 155 (300)
T 3eb2_A 148 LDVIARLA 155 (300)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 76666664
No 150
>3khs_A Purine nucleoside phosphorylase; alpha-beta structure, mixed beta-barrel, hydrolase; 2.38A {Grouper iridovirus} SCOP: c.56.2.0
Probab=32.03 E-value=1.3e+02 Score=27.78 Aligned_cols=50 Identities=20% Similarity=0.280 Sum_probs=33.6
Q ss_pred CCCHHHHHHHHHHHHHhCCCcce--EeeceEEec-C---CCHHHHHHHHHHHHHcCCcEEeec
Q 019890 241 RANFKQSLDVLMMAKDYVPAGTL--TKTSIMLGC-G---ETPDQVVSTMEKVRAAGVDVMTFG 297 (334)
Q Consensus 241 ~~tye~sL~vL~~ak~~~p~Gl~--tkTgiMVGl-G---ETdEE~~etl~~Lre~gvd~vtig 297 (334)
.++.+-+-.+.+.+++. |+. +..|.++.+ | ||.+|. +.++..|+|.|..-
T Consensus 162 ~yd~~L~~~~~~~a~~~---gi~~~~~~Gvy~~~~Gp~feT~AE~----~~~r~~Gad~VgMe 217 (285)
T 3khs_A 162 VYDKTLRKYAISAAREL---GMSYATHEGVYCCVNGPSFETPAEC----KILRLMGSDAVGMS 217 (285)
T ss_dssp CBCHHHHHHHHHHHHHH---TCGGGEEEEEEEECCCSSCCCHHHH----HHHHHTTCSEEESS
T ss_pred cCCHHHHHHHHHHHHHc---CCCcceeeEEEEEecCCEEeCHHHH----HHHHHcCCcEEecc
Confidence 44554444455556665 566 788888777 6 888875 45678899987764
No 151
>3gr7_A NADPH dehydrogenase; flavin, FMN, beta-alpha-barrel, oxidoreductase, flavoprotein; HET: FMN; 2.30A {Geobacillus kaustophilus} PDB: 3gr8_A*
Probab=31.83 E-value=33 Score=32.41 Aligned_cols=50 Identities=18% Similarity=0.188 Sum_probs=33.9
Q ss_pred HHHHHHHHHhC--CCcceEeeceEEecCCCHHHHHHHHHHHHHcCCcEEeec
Q 019890 248 LDVLMMAKDYV--PAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFG 297 (334)
Q Consensus 248 L~vL~~ak~~~--p~Gl~tkTgiMVGlGETdEE~~etl~~Lre~gvd~vtig 297 (334)
+++++.+|+.. |-|+.+..+-...-|.+.+|..+.++.|.+.|+|.+++.
T Consensus 198 ~eiv~avr~~v~~pv~vRls~~~~~~~g~~~~~~~~la~~L~~~Gvd~i~vs 249 (340)
T 3gr7_A 198 GEVIDAVREVWDGPLFVRISASDYHPDGLTAKDYVPYAKRMKEQGVDLVDVS 249 (340)
T ss_dssp HHHHHHHHHHCCSCEEEEEESCCCSTTSCCGGGHHHHHHHHHHTTCCEEEEE
T ss_pred HHHHHHHHHhcCCceEEEeccccccCCCCCHHHHHHHHHHHHHcCCCEEEEe
Confidence 57777887765 212222221111126788999999999999999999984
No 152
>3qy7_A Tyrosine-protein phosphatase YWQE; TIM barrel, polymerase and histindinol phosphatase(PHP)-like phosphatase, hydrolase; 1.62A {Bacillus subtilis} PDB: 3qy6_A
Probab=31.68 E-value=44 Score=30.31 Aligned_cols=29 Identities=17% Similarity=0.259 Sum_probs=24.9
Q ss_pred CCCCchhHHHHHHHHHHCCCcEEEEeeec
Q 019890 155 PPPDPDEPTNVAEAIASWGLDYVVITSVD 183 (334)
Q Consensus 155 ~~ld~~Ep~~~A~av~~~GlkeVVLTSv~ 183 (334)
++.+++|.++.++++.+.|+++|++|--.
T Consensus 15 G~~~~~~sl~~~~~a~~~G~~~i~~T~H~ 43 (262)
T 3qy7_A 15 GAGDSADSIEMARAAVRQGIRTIIATPHH 43 (262)
T ss_dssp SCSSHHHHHHHHHHHHHTTCCEEECCCBS
T ss_pred CCCCHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 35778888889999999999999999754
No 153
>3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4
Probab=31.55 E-value=79 Score=29.07 Aligned_cols=58 Identities=14% Similarity=0.229 Sum_probs=37.2
Q ss_pred HHHhhcCCCCCHHHHHHHHHHHHHhCCCcceE----eeceEEecCCCHHHHHHHHHHHHHcCCcEEeec
Q 019890 233 LQSAVRDHRANFKQSLDVLMMAKDYVPAGTLT----KTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFG 297 (334)
Q Consensus 233 l~~~Vr~r~~tye~sL~vL~~ak~~~p~Gl~t----kTgiMVGlGETdEE~~etl~~Lre~gvd~vtig 297 (334)
-.+.+. .+-+.++.++.++.+|+..++ +.+ -...++-.| +.+.++.+.+.|+|.+-+.
T Consensus 71 ~~rAL~-~G~~~~~~~~~v~~~r~~~~~-~Pivlm~Y~n~v~~~g-----~~~f~~~~~~aGvdGvIip 132 (271)
T 3nav_A 71 NLRALA-AKTTPDICFELIAQIRARNPE-TPIGLLMYANLVYARG-----IDDFYQRCQKAGVDSVLIA 132 (271)
T ss_dssp HHHHHH-TTCCHHHHHHHHHHHHHHCTT-SCEEEEECHHHHHHTC-----HHHHHHHHHHHTCCEEEET
T ss_pred HHHHHH-cCCCHHHHHHHHHHHHhcCCC-CCEEEEecCcHHHHHh-----HHHHHHHHHHCCCCEEEEC
Confidence 334455 478899999999999986433 221 111111122 3667888999999998884
No 154
>1ub3_A Aldolase protein; schiff base, deoxyribose phosphate, carbinolamine, structural genomics, riken structural genomics/proteomics initiative; HET: HPD; 1.40A {Thermus thermophilus} SCOP: c.1.10.1 PDB: 1j2w_A*
Probab=31.14 E-value=94 Score=27.64 Aligned_cols=129 Identities=12% Similarity=0.147 Sum_probs=0.0
Q ss_pred CCCcccCCCCCCCCCCchhHHHHHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhCCCCceeee--------
Q 019890 143 CRFCNVKTSRAPPPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEAL-------- 214 (334)
Q Consensus 143 C~FC~V~~~r~p~~ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~P~i~vE~L-------- 214 (334)
|.-.++|.+. .+.+....+++.+.++|.++|-+ -+|...+.++..+.+.+-|.+|++...+..+.++
T Consensus 58 ~~vigFP~G~----~~~~~k~~e~~~Ai~~GAdevd~-vinig~~~~g~~~~v~~ei~~v~~a~~~~~lkvIlet~~l~~ 132 (220)
T 1ub3_A 58 VTVVGFPLGY----QEKEVKALEAALACARGADEVDM-VLHLGRAKAGDLDYLEAEVRAVREAVPQAVLKVILETGYFSP 132 (220)
T ss_dssp EEEESTTTCC----SCHHHHHHHHHHHHHTTCSEEEE-ECCHHHHHTTCHHHHHHHHHHHHHHSTTSEEEEECCGGGSCH
T ss_pred EEEecCCCCC----CchHHHHHHHHHHHHcCCCEEEe-cccchhhhCCCHHHHHHHHHHHHHHHcCCCceEEEecCCCCH
Q ss_pred ---------eccccccccccchhhHHHHHHhhcCCCCC-HHHHHHHHHHHHHhCCCcceEeeceEEecCCCHHHHHHHHH
Q 019890 215 ---------VAKSGLNVFAHNIETVEELQSAVRDHRAN-FKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTME 284 (334)
Q Consensus 215 ---------l~~ag~dv~~HnlETv~~l~~~Vr~r~~t-ye~sL~vL~~ak~~~p~Gl~tkTgiMVGlGETdEE~~etl~ 284 (334)
..++|.|++.-. .++. ---.++-++.+++.....+.+|... |.- |.+|+++.++
T Consensus 133 e~i~~a~~ia~eaGADfVKTs-------------TGf~~~gat~~dv~~m~~~vg~~v~VkaaG--Gir-t~~~al~~i~ 196 (220)
T 1ub3_A 133 EEIARLAEAAIRGGADFLKTS-------------TGFGPRGASLEDVALLVRVAQGRAQVKAAG--GIR-DRETALRMLK 196 (220)
T ss_dssp HHHHHHHHHHHHHTCSEEECC-------------CSSSSCCCCHHHHHHHHHHHTTSSEEEEES--SCC-SHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCEEEeC-------------CCCCCCCCCHHHHHHHHHhhCCCCeEEEEC--CCC-CHHHHHHHHH
Q ss_pred HHHHcCCcEEee
Q 019890 285 KVRAAGVDVMTF 296 (334)
Q Consensus 285 ~Lre~gvd~vti 296 (334)
+|.++++.
T Consensus 197 ----aGa~RiG~ 204 (220)
T 1ub3_A 197 ----AGASRLGT 204 (220)
T ss_dssp ----TTCSEEEE
T ss_pred ----CCCcccch
No 155
>3l5a_A NADH/flavin oxidoreductase/NADH oxidase; OLD yellow enzyme family, OYE-like FMN-binding domain, TIM B oxidoreductase; HET: PGE; 1.65A {Staphylococcus aureus}
Probab=31.12 E-value=31 Score=33.79 Aligned_cols=26 Identities=15% Similarity=0.253 Sum_probs=23.1
Q ss_pred CCCHHHHHHHHHHHHH-cCCcEEeecc
Q 019890 273 GETPDQVVSTMEKVRA-AGVDVMTFGQ 298 (334)
Q Consensus 273 GETdEE~~etl~~Lre-~gvd~vtigq 298 (334)
|-+.+|..+.++.|.+ .|+|.|++-.
T Consensus 260 G~~~ed~~~la~~L~~~~Gvd~I~vs~ 286 (419)
T 3l5a_A 260 GYTIDEFNQLIDWVMDVSNIQYLAIAS 286 (419)
T ss_dssp EECHHHHHHHHHHHHHHSCCCCEEECC
T ss_pred CCCHHHHHHHHHHHHhhcCCcEEEEee
Confidence 5689999999999999 9999998854
No 156
>3oa3_A Aldolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, pathogenic fungus; 1.60A {Coccidioides immitis}
Probab=31.11 E-value=2.6e+02 Score=26.04 Aligned_cols=61 Identities=10% Similarity=0.078 Sum_probs=36.7
Q ss_pred CCCcccCCCCCCCCCCchhHHHHHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhCCC
Q 019890 143 CRFCNVKTSRAPPPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPN 208 (334)
Q Consensus 143 C~FC~V~~~r~p~~ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~P~ 208 (334)
|+-..+|.+. .+.+.-..+++.+.+.|.++|-+. +|...+.++..+.+.+-|++|++...+
T Consensus 113 ~tVigFP~G~----~~~~~Kv~Ea~~Ai~~GAdEIDmV-INig~lk~g~~~~v~~eI~~V~~a~~~ 173 (288)
T 3oa3_A 113 TCVIGFHEGT----YSTDQKVSEAKRAMQNGASELDMV-MNYPWLSEKRYTDVFQDIRAVRLAAKD 173 (288)
T ss_dssp EEEESTTTSC----SCHHHHHHHHHHHHHTTCSEEEEE-CCHHHHHTTCHHHHHHHHHHHHHHTTT
T ss_pred EEEeCCCCCC----CcHHHHHHHHHHHHHcCCCEEEEE-eehhhhcCCcHHHHHHHHHHHHHHhcC
Confidence 3334556533 345666778888889999998543 222123333345677778888776544
No 157
>3fuc_A Purine nucleoside phosphorylase; recombinant, glycosyltransferase, transferase, 9-deazaguanine, multisubstrate analogue inhibitors, nucleoside-binding; HET: 9D9 9DG; 1.45A {Bos taurus} SCOP: c.56.2.1 PDB: 1b8n_A* 1b8o_A* 2ai2_A* 1v48_A* 2ai1_A* 2ai3_A* 1lvu_A* 1lv8_A* 1a9o_A 1a9p_A* 1a9s_A* 1fxu_A* 2qpl_A* 1a9t_A* 3pnp_A 1pbn_A 4pnp_A 1a9q_A* 1a9r_A* 1vfn_A* ...
Probab=30.92 E-value=1e+02 Score=28.46 Aligned_cols=50 Identities=16% Similarity=0.148 Sum_probs=33.1
Q ss_pred CCCHHHHHHHHHHHHHhCCCcce--EeeceEEec-C---CCHHHHHHHHHHHHHcCCcEEeec
Q 019890 241 RANFKQSLDVLMMAKDYVPAGTL--TKTSIMLGC-G---ETPDQVVSTMEKVRAAGVDVMTFG 297 (334)
Q Consensus 241 ~~tye~sL~vL~~ak~~~p~Gl~--tkTgiMVGl-G---ETdEE~~etl~~Lre~gvd~vtig 297 (334)
.++.+-+-.+.+.+++. |+. +..|.++.+ | ||.+|. +.++.+|.|.|..-
T Consensus 165 ~~d~~L~~~~~~~a~~~---gi~~~~~~Gvy~~~~Gp~feT~AE~----~~~r~~Gad~VgMe 220 (284)
T 3fuc_A 165 AYDRDMRQKAHSTWKQM---GEQRELQEGTYVMLGGPNFETVAEC----RLLRNLGADAVGMS 220 (284)
T ss_dssp CSCHHHHHHHHHHHHHH---TCSSCCEEEEEEECCCSSCCCHHHH----HHHHHTTCSEEESS
T ss_pred CCCHHHHHHHHHHHHHc---CCCcceEeeEEEEecCCEEcCHHHH----HHHHHcCCcEEecC
Confidence 34544444445556665 465 788888777 6 788775 45678899988764
No 158
>2yxg_A DHDPS, dihydrodipicolinate synthase; MJ0244, TIM beta/alpha-barrel fold, structural genomics, NPPSFA; 2.20A {Methanocaldococcus jannaschii DSM2661}
Probab=30.91 E-value=1.6e+02 Score=26.84 Aligned_cols=136 Identities=13% Similarity=0.159 Sum_probs=84.4
Q ss_pred CCCCchhHHHHHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhCCCCceeeeeccccccccccchhhHHHHH
Q 019890 155 PPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVAKSGLNVFAHNIETVEELQ 234 (334)
Q Consensus 155 ~~ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~P~i~vE~Ll~~ag~dv~~HnlETv~~l~ 234 (334)
..+|.+...+.++.+.+.|++-+++.|-+. ..+....+.-.++++.+.+...+ ..-++.+-
T Consensus 16 g~iD~~~l~~lv~~li~~Gv~gl~~~GttG-E~~~Ls~~Er~~v~~~~~~~~~g----------r~pviaGv-------- 76 (289)
T 2yxg_A 16 KEVDFDGLEENINFLIENGVSGIVAVGTTG-ESPTLSHEEHKKVIEKVVDVVNG----------RVQVIAGA-------- 76 (289)
T ss_dssp TEECHHHHHHHHHHHHHTTCSEEEESSTTT-TGGGSCHHHHHHHHHHHHHHHTT----------SSEEEEEC--------
T ss_pred CCcCHHHHHHHHHHHHHCCCCEEEECcccc-ChhhCCHHHHHHHHHHHHHHhCC----------CCcEEEeC--------
Confidence 358889999999999999999998877542 12222223344566665543221 12233322
Q ss_pred HhhcCCCCCHHHHHHHHHHHHHhCCCcceEeeceEEecCCCHHHHHHHHHHHHHcCCcEEeeccCcCCCCCCCcccccCC
Q 019890 235 SAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMPVSEYIT 314 (334)
Q Consensus 235 ~~Vr~r~~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGlGETdEE~~etl~~Lre~gvd~vtigqYlrP~~~h~~v~~yv~ 314 (334)
-..+.++.++..+++++.--+|+.+-+-.. +.-|++++.+.++.+.+.- + ++|.-|--|.... --++
T Consensus 77 -----g~~~t~~ai~la~~a~~~Gadavlv~~P~y--~~~s~~~l~~~f~~ia~a~-~-lPiilYn~P~~tg----~~l~ 143 (289)
T 2yxg_A 77 -----GSNCTEEAIELSVFAEDVGADAVLSITPYY--NKPTQEGLRKHFGKVAESI-N-LPIVLYNVPSRTA----VNLE 143 (289)
T ss_dssp -----CCSSHHHHHHHHHHHHHHTCSEEEEECCCS--SCCCHHHHHHHHHHHHHHC-S-SCEEEEECHHHHS----CCCC
T ss_pred -----CCCCHHHHHHHHHHHHhcCCCEEEECCCCC--CCCCHHHHHHHHHHHHHhc-C-CCEEEEeCccccC----cCCC
Confidence 134677888889999887444443333322 2459999999999988752 2 5666676675322 2467
Q ss_pred HHHHHHHH
Q 019890 315 PEAFERYR 322 (334)
Q Consensus 315 P~~f~~~~ 322 (334)
|+.+.++.
T Consensus 144 ~~~~~~La 151 (289)
T 2yxg_A 144 PKTVKLLA 151 (289)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77776664
No 159
>3s5o_A 4-hydroxy-2-oxoglutarate aldolase, mitochondrial; beta barrel, schiff base, hydroxyproline metabolis; HET: KPI; 1.97A {Homo sapiens} SCOP: c.1.10.0 PDB: 3s5n_A
Probab=30.91 E-value=1.4e+02 Score=27.56 Aligned_cols=138 Identities=9% Similarity=0.093 Sum_probs=83.4
Q ss_pred CCCCchhHHHHHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhCCCCceeeeeccccccccccchhhHHHHH
Q 019890 155 PPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVAKSGLNVFAHNIETVEELQ 234 (334)
Q Consensus 155 ~~ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~P~i~vE~Ll~~ag~dv~~HnlETv~~l~ 234 (334)
..+|.+...+.++.+.+.|++-+++.|-+.. ......+.-.++++.+.+...+ ..-++.+-
T Consensus 30 g~iD~~~l~~lv~~li~~Gv~Gl~v~GtTGE-~~~Ls~~Er~~v~~~~~~~~~g----------r~pviaGv-------- 90 (307)
T 3s5o_A 30 AEVDYGKLEENLHKLGTFPFRGFVVQGSNGE-FPFLTSSERLEVVSRVRQAMPK----------NRLLLAGS-------- 90 (307)
T ss_dssp SCBCHHHHHHHHHHHTTSCCSEEEESSGGGT-GGGSCHHHHHHHHHHHHHTSCT----------TSEEEEEC--------
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEECccccc-hhhCCHHHHHHHHHHHHHHcCC----------CCcEEEec--------
Confidence 4688999999999999999999998775531 1111223445667666654321 12233322
Q ss_pred HhhcCCCCCHHHHHHHHHHHHHhCCCcceEeeceEEecCCCHHHHHHHHHHHHHcCCcEEeeccCcCCCCCCCcccccCC
Q 019890 235 SAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMPVSEYIT 314 (334)
Q Consensus 235 ~~Vr~r~~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGlGETdEE~~etl~~Lre~gvd~vtigqYlrP~~~h~~v~~yv~ 314 (334)
-..+.++.++..+++++.--+|+.+-+-.-....-|++++.+.++.+.+. ++ ++|.-|--|.... --++
T Consensus 91 -----g~~~t~~ai~la~~A~~~Gadavlv~~P~y~~~~~s~~~l~~~f~~ia~a-~~-lPiilYn~P~~tg----~~l~ 159 (307)
T 3s5o_A 91 -----GCESTQATVEMTVSMAQVGADAAMVVTPCYYRGRMSSAALIHHYTKVADL-SP-IPVVLYSVPANTG----LDLP 159 (307)
T ss_dssp -----CCSSHHHHHHHHHHHHHTTCSEEEEECCCTTGGGCCHHHHHHHHHHHHHH-CS-SCEEEEECHHHHS----CCCC
T ss_pred -----CCCCHHHHHHHHHHHHHcCCCEEEEcCCCcCCCCCCHHHHHHHHHHHHhh-cC-CCEEEEeCCcccC----CCCC
Confidence 13467888888899988633322221111111125999999999999876 23 6676776665322 2356
Q ss_pred HHHHHHHH
Q 019890 315 PEAFERYR 322 (334)
Q Consensus 315 P~~f~~~~ 322 (334)
|+.+.++.
T Consensus 160 ~~~~~~La 167 (307)
T 3s5o_A 160 VDAVVTLS 167 (307)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 66665554
No 160
>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1
Probab=30.65 E-value=65 Score=32.71 Aligned_cols=50 Identities=20% Similarity=0.359 Sum_probs=35.3
Q ss_pred HHHHHHHHHhCCCcceE--eeceE--EecCCCHHHHHHHHHHHHHcCCcEEeec
Q 019890 248 LDVLMMAKDYVPAGTLT--KTSIM--LGCGETPDQVVSTMEKVRAAGVDVMTFG 297 (334)
Q Consensus 248 L~vL~~ak~~~p~Gl~t--kTgiM--VGlGETdEE~~etl~~Lre~gvd~vtig 297 (334)
+++++.+|+..+..+.+ |-+.- +--|-+.+|..+.++.|.+.|+|.+++.
T Consensus 195 ~eiv~avr~~vG~~~~v~vrls~~~~~~~g~~~~~~~~~a~~l~~~g~d~i~v~ 248 (671)
T 1ps9_A 195 VEVVRAVRERVGNDFIIIYRLSMLDLVEDGGTFAETVELAQAIEAAGATIINTG 248 (671)
T ss_dssp HHHHHHHHHHHCSSSEEEEEEEEECCSTTCCCHHHHHHHHHHHHHHTCSEEEEE
T ss_pred HHHHHHHHHHcCCCceEEEEECccccCCCCCCHHHHHHHHHHHHhcCCCEEEcC
Confidence 67888888865432322 22211 1127899999999999999999999985
No 161
>3nvt_A 3-deoxy-D-arabino-heptulosonate 7-phosphate synth; bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismat listeria monocytogenes EGD-E; 1.95A {Listeria monocytogenes} PDB: 3tfc_A*
Probab=30.63 E-value=1.7e+02 Score=28.34 Aligned_cols=117 Identities=16% Similarity=0.212 Sum_probs=62.7
Q ss_pred CchhHHHHHHHHHHCCCcEEEEeeecCCCCC----CchHHHHHHHHHHHHhhCCCC--ceeee------ecccccccccc
Q 019890 158 DPDEPTNVAEAIASWGLDYVVITSVDRDDLA----DQGSGHFAQTVRKLKELKPNM--LIEAL------VAKSGLNVFAH 225 (334)
Q Consensus 158 d~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~----d~Ga~~fa~lIr~Ik~~~P~i--~vE~L------l~~ag~dv~~H 225 (334)
|.+...+.|+++++.|.+.|...+-.-...+ .-|.+.+. .+.++++.. ++ ..+++ +...-+|++..
T Consensus 154 s~e~a~~~a~~~k~aGa~~vk~q~fkprts~~~f~gl~~egl~-~L~~~~~~~-Gl~~~te~~d~~~~~~l~~~vd~lkI 231 (385)
T 3nvt_A 154 SYEQVAAVAESIKAKGLKLIRGGAFKPRTSPYDFQGLGLEGLK-ILKRVSDEY-GLGVISEIVTPADIEVALDYVDVIQI 231 (385)
T ss_dssp CHHHHHHHHHHHHHTTCCEEECBSSCCCSSTTSCCCCTHHHHH-HHHHHHHHH-TCEEEEECCSGGGHHHHTTTCSEEEE
T ss_pred CHHHHHHHHHHHHHcCCCeEEcccccCCCChHhhcCCCHHHHH-HHHHHHHHc-CCEEEEecCCHHHHHHHHhhCCEEEE
Confidence 6788899999999999998877663311111 12344443 333333321 22 11222 11122444443
Q ss_pred chhhHHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCcceEeeceEEecCCCHHHHHHHHHHHHHcCCcEEee
Q 019890 226 NIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTF 296 (334)
Q Consensus 226 nlETv~~l~~~Vr~r~~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGlGETdEE~~etl~~Lre~gvd~vti 296 (334)
.- + .+ .+ ..+|+.+.+..-. +.+|+| +.=|.+|+...++.+++.|...+.+
T Consensus 232 gs----~---~~----~n----~~LL~~~a~~gkP-Vilk~G----~~~t~~e~~~Ave~i~~~Gn~~i~L 282 (385)
T 3nvt_A 232 GA----R---NM----QN----FELLKAAGRVDKP-ILLKRG----LSATIEEFIGAAEYIMSQGNGKIIL 282 (385)
T ss_dssp CG----G---GT----TC----HHHHHHHHTSSSC-EEEECC----TTCCHHHHHHHHHHHHTTTCCCEEE
T ss_pred Cc----c---cc----cC----HHHHHHHHccCCc-EEEecC----CCCCHHHHHHHHHHHHHcCCCeEEE
Confidence 21 0 00 11 3566666554222 444543 3568899999999999888764443
No 162
>1mzh_A Deoxyribose-phosphate aldolase; alpha-beta barrel, structural genomics, PSI, protein structure initiative; 2.00A {Aquifex aeolicus} SCOP: c.1.10.1
Probab=30.35 E-value=2.7e+02 Score=24.22 Aligned_cols=54 Identities=13% Similarity=0.188 Sum_probs=41.6
Q ss_pred CCCHHHHHHHHHHHHHhCCCcceEeeceEEec-CCCHHHHHHHHHHHHHcCCcEEeec
Q 019890 241 RANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC-GETPDQVVSTMEKVRAAGVDVMTFG 297 (334)
Q Consensus 241 ~~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGl-GETdEE~~etl~~Lre~gvd~vtig 297 (334)
...|+..++.++.+++..+ ++.+|- |+-- +-|++++.+..+.+.+.|+|.|.+.
T Consensus 98 ~~~~~~~~~~i~~v~~a~~-pv~vKv--i~e~~~l~~~~~~~~a~~a~eaGad~I~ts 152 (225)
T 1mzh_A 98 SEKYDFVVEELKEIFRETP-SAVHKV--IVETPYLNEEEIKKAVEICIEAGADFIKTS 152 (225)
T ss_dssp TTCHHHHHHHHHHHHHTCT-TSEEEE--ECCGGGCCHHHHHHHHHHHHHHTCSEEECC
T ss_pred cCChHHHHHHHHHHHHHhc-CceEEE--EEeCCCCCHHHHHHHHHHHHHhCCCEEEEC
Confidence 4678888888999998765 355554 3222 4588999999999999999999665
No 163
>3lab_A Putative KDPG (2-keto-3-deoxy-6-phosphogluconate) aldolase; unknown function, aldolase superfamily, class I aldolase, KDPG aldolase domain; 1.84A {Oleispira antarctica} PDB: 3vcr_A
Probab=30.16 E-value=93 Score=27.88 Aligned_cols=108 Identities=15% Similarity=0.172 Sum_probs=66.7
Q ss_pred CCCchhHHHHHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhCCCCceee---e-------ecccccccccc
Q 019890 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEA---L-------VAKSGLNVFAH 225 (334)
Q Consensus 156 ~ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~P~i~vE~---L-------l~~ag~dv~~H 225 (334)
-.++++...+++++.+.|++-+-+|-.. ++ -.+.|++|++.+|+..|-. + ..++|.+++-
T Consensus 21 ~~~~~~a~~~a~al~~gGi~~iEvt~~t----~~-----a~~~I~~l~~~~p~~~IGAGTVlt~~~a~~ai~AGA~fiv- 90 (217)
T 3lab_A 21 IDDLVHAIPMAKALVAGGVHLLEVTLRT----EA-----GLAAISAIKKAVPEAIVGAGTVCTADDFQKAIDAGAQFIV- 90 (217)
T ss_dssp CSCGGGHHHHHHHHHHTTCCEEEEETTS----TT-----HHHHHHHHHHHCTTSEEEEECCCSHHHHHHHHHHTCSEEE-
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEEeCCC----cc-----HHHHHHHHHHHCCCCeEeeccccCHHHHHHHHHcCCCEEE-
Confidence 3688999999999999999988887643 21 2478889999888754321 1 4455555431
Q ss_pred chhhHHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCcc--eEeeceEEecCCCHHHHHHHHHHHHHcCCcEEeecc
Q 019890 226 NIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGT--LTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQ 298 (334)
Q Consensus 226 nlETv~~l~~~Vr~r~~tye~sL~vL~~ak~~~p~Gl--~tkTgiMVGlGETdEE~~etl~~Lre~gvd~vtigq 298 (334)
- +..+ -++++.+++. |+ .-.--+|-|. -|.+|+.+. .++|+|.|-+|+
T Consensus 91 ------------s-P~~~----~evi~~~~~~---~v~~~~~~~~~PG~-~TptE~~~A----~~~Gad~vK~FP 140 (217)
T 3lab_A 91 ------------S-PGLT----PELIEKAKQV---KLDGQWQGVFLPGV-ATASEVMIA----AQAGITQLKCFP 140 (217)
T ss_dssp ------------E-SSCC----HHHHHHHHHH---HHHCSCCCEEEEEE-CSHHHHHHH----HHTTCCEEEETT
T ss_pred ------------e-CCCc----HHHHHHHHHc---CCCccCCCeEeCCC-CCHHHHHHH----HHcCCCEEEECc
Confidence 1 1211 2555566554 33 0001233344 567776664 568888888775
No 164
>2ojp_A DHDPS, dihydrodipicolinate synthase; dimer, lysine biosynthe lyase; HET: KGC GOL; 1.70A {Escherichia coli} PDB: 1yxc_A 1dhp_A 1yxd_A* 2ats_A* 3du0_A* 3c0j_A* 3ubs_A* 4eou_A* 3i7q_A* 3i7r_A* 3i7s_A* 2pur_A* 1s5v_A 1s5w_A 1s5t_A 3den_A* 2a6l_A 2a6n_A 3g0s_A
Probab=30.05 E-value=1.2e+02 Score=27.60 Aligned_cols=136 Identities=15% Similarity=0.112 Sum_probs=81.7
Q ss_pred CCCCchhHHHHHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhCCCCceeeeeccccccccccchhhHHHHH
Q 019890 155 PPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVAKSGLNVFAHNIETVEELQ 234 (334)
Q Consensus 155 ~~ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~P~i~vE~Ll~~ag~dv~~HnlETv~~l~ 234 (334)
..+|.+...+.++.+.+.|++-+++.|-+.. .+....+.-.++++.+.+...+ ..-++.+-
T Consensus 17 g~iD~~~l~~lv~~li~~Gv~gl~~~GttGE-~~~Ls~~Er~~v~~~~~~~~~g----------r~pviaGv-------- 77 (292)
T 2ojp_A 17 GNVCRASLKKLIDYHVASGTSAIVSVGTTGE-SATLNHDEHADVVMMTLDLADG----------RIPVIAGT-------- 77 (292)
T ss_dssp SCBCHHHHHHHHHHHHHHTCCEEEESSTTTT-GGGSCHHHHHHHHHHHHHHHTT----------SSCEEEEC--------
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEECccccc-hhhCCHHHHHHHHHHHHHHhCC----------CCcEEEec--------
Confidence 4689999999999999999999988775431 2211223344566655543221 12233322
Q ss_pred HhhcCCCCCHHHHHHHHHHHHHhCCCcceEeeceEEecCCCHHHHHHHHHHHHHcCCcEEeeccCcCCCCCCCcccccCC
Q 019890 235 SAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMPVSEYIT 314 (334)
Q Consensus 235 ~~Vr~r~~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGlGETdEE~~etl~~Lre~gvd~vtigqYlrP~~~h~~v~~yv~ 314 (334)
-..+.++.++..+++.+.--+|+.+-+-.. +.-|++++.+.++.+.+.- + ++|.-|--|.... .-++
T Consensus 78 -----g~~~t~~ai~la~~a~~~Gadavlv~~P~y--~~~s~~~l~~~f~~ia~a~-~-lPiilYn~P~~tg----~~l~ 144 (292)
T 2ojp_A 78 -----GANATAEAISLTQRFNDSGIVGCLTVTPYY--NRPSQEGLYQHFKAIAEHT-D-LPQILYNVPSRTG----CDLL 144 (292)
T ss_dssp -----CCSSHHHHHHHHHHTTTSSCSEEEEECCCS--SCCCHHHHHHHHHHHHTTC-S-SCEEEECCHHHHS----CCCC
T ss_pred -----CCccHHHHHHHHHHHHhcCCCEEEECCCCC--CCCCHHHHHHHHHHHHHhc-C-CCEEEEeCcchhc----cCCC
Confidence 134567777777777775333333333222 1459999999999998752 3 5666676665322 2456
Q ss_pred HHHHHHHH
Q 019890 315 PEAFERYR 322 (334)
Q Consensus 315 P~~f~~~~ 322 (334)
|+.+.++.
T Consensus 145 ~~~~~~La 152 (292)
T 2ojp_A 145 PETVGRLA 152 (292)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77666664
No 165
>1o4u_A Type II quinolic acid phosphoribosyltransferase; structural genomics, joint center for structural genomics, J protein structure initiative; 2.50A {Thermotoga maritima} SCOP: c.1.17.1 d.41.2.1
Probab=29.38 E-value=97 Score=28.80 Aligned_cols=53 Identities=19% Similarity=0.334 Sum_probs=37.1
Q ss_pred HHHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhCCCCceeee----------eccccccccc
Q 019890 164 NVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEAL----------VAKSGLNVFA 224 (334)
Q Consensus 164 ~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~P~i~vE~L----------l~~ag~dv~~ 224 (334)
++++.+.+.|.++|.|=- ...+.+.++++.++...|.+.+|+. +.+.|+|++.
T Consensus 204 eea~eA~~aGaD~I~LDn--------~~~e~l~~av~~l~~~~~~v~ieASGGIt~eni~~~a~tGVD~Is 266 (285)
T 1o4u_A 204 EDALRAVEAGADIVMLDN--------LSPEEVKDISRRIKDINPNVIVEVSGGITEENVSLYDFETVDVIS 266 (285)
T ss_dssp HHHHHHHHTTCSEEEEES--------CCHHHHHHHHHHHHHHCTTSEEEEEECCCTTTGGGGCCTTCCEEE
T ss_pred HHHHHHHHcCCCEEEECC--------CCHHHHHHHHHHhhccCCCceEEEECCCCHHHHHHHHHcCCCEEE
Confidence 555666778999887722 2356778888888776666777765 6777887754
No 166
>3si9_A DHDPS, dihydrodipicolinate synthase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 2.10A {Bartonella henselae}
Probab=29.36 E-value=1.6e+02 Score=27.32 Aligned_cols=137 Identities=12% Similarity=0.048 Sum_probs=84.6
Q ss_pred CCCCchhHHHHHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhCCCCceeeeeccccccccccchhhHHHHH
Q 019890 155 PPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVAKSGLNVFAHNIETVEELQ 234 (334)
Q Consensus 155 ~~ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~P~i~vE~Ll~~ag~dv~~HnlETv~~l~ 234 (334)
..+|.+...+.++.+.+.|++-+++.|-+.. ......+.-.++++.+.+...+ .+-|+.+-
T Consensus 38 g~iD~~~l~~li~~li~~Gv~Gl~v~GtTGE-~~~Ls~~Er~~v~~~~v~~~~g----------rvpViaGv-------- 98 (315)
T 3si9_A 38 GAIDEKAFCNFVEWQITQGINGVSPVGTTGE-SPTLTHEEHKRIIELCVEQVAK----------RVPVVAGA-------- 98 (315)
T ss_dssp SCBCHHHHHHHHHHHHHTTCSEEECSSTTTT-GGGSCHHHHHHHHHHHHHHHTT----------SSCBEEEC--------
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEeCccccC-ccccCHHHHHHHHHHHHHHhCC----------CCcEEEeC--------
Confidence 4689999999999999999999988775421 2221223344566655553211 12233322
Q ss_pred HhhcCCCCCHHHHHHHHHHHHHhCCCcceEeeceEEecCCCHHHHHHHHHHHHHcCCcEEeeccCcCCCCCCCcccccCC
Q 019890 235 SAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMPVSEYIT 314 (334)
Q Consensus 235 ~~Vr~r~~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGlGETdEE~~etl~~Lre~gvd~vtigqYlrP~~~h~~v~~yv~ 314 (334)
-..+.++.++..+.+.+.--+|+.+-+-.- +.-|++++.+.++.+.+.- -++|.-|--|.... -.++
T Consensus 99 -----g~~st~~ai~la~~A~~~Gadavlv~~P~y--~~~~~~~l~~~f~~va~a~--~lPiilYn~P~~tg----~~l~ 165 (315)
T 3si9_A 99 -----GSNSTSEAVELAKHAEKAGADAVLVVTPYY--NRPNQRGLYTHFSSIAKAI--SIPIIIYNIPSRSV----IDMA 165 (315)
T ss_dssp -----CCSSHHHHHHHHHHHHHTTCSEEEEECCCS--SCCCHHHHHHHHHHHHHHC--SSCEEEEECHHHHS----CCCC
T ss_pred -----CCCCHHHHHHHHHHHHhcCCCEEEECCCCC--CCCCHHHHHHHHHHHHHcC--CCCEEEEeCchhhC----CCCC
Confidence 235678888999999887334333322221 2458999999999998762 35666676665332 2456
Q ss_pred HHHHHHHHH
Q 019890 315 PEAFERYRA 323 (334)
Q Consensus 315 P~~f~~~~~ 323 (334)
|+.+.++.+
T Consensus 166 ~~~~~~La~ 174 (315)
T 3si9_A 166 VETMRDLCR 174 (315)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 776666553
No 167
>1tqx_A D-ribulose-5-phosphate 3-epimerase, putative; structural genomics, protein structure initiative, PSI; 2.00A {Plasmodium falciparum} SCOP: c.1.2.2
Probab=29.21 E-value=22 Score=31.86 Aligned_cols=67 Identities=18% Similarity=0.229 Sum_probs=38.8
Q ss_pred CCchhHHHHHHHHHHCC-CcEEEEeeecCCCCCCch-HHHHHHHHHHHHhhCCCCceeee----------eccccccccc
Q 019890 157 PDPDEPTNVAEAIASWG-LDYVVITSVDRDDLADQG-SGHFAQTVRKLKELKPNMLIEAL----------VAKSGLNVFA 224 (334)
Q Consensus 157 ld~~Ep~~~A~av~~~G-lkeVVLTSv~rdDl~d~G-a~~fa~lIr~Ik~~~P~i~vE~L----------l~~ag~dv~~ 224 (334)
+.+..|.+.++.+...| +++|.+-+|+.+ ...+. ...-.+-|+++++..+++.|++- +.++|.|++-
T Consensus 121 lnp~tp~~~~~~~l~~g~~D~VlvmsV~pG-f~gq~f~~~~l~ki~~lr~~~~~~~I~VdGGI~~~ti~~~~~aGAd~~V 199 (227)
T 1tqx_A 121 IKPKTDVQKLVPILDTNLINTVLVMTVEPG-FGGQSFMHDMMGKVSFLRKKYKNLNIQVDGGLNIETTEISASHGANIIV 199 (227)
T ss_dssp ECTTSCGGGGHHHHTTTCCSEEEEESSCTT-CSSCCCCGGGHHHHHHHHHHCTTCEEEEESSCCHHHHHHHHHHTCCEEE
T ss_pred eCCCCcHHHHHHHhhcCCcCEEEEeeeccC-CCCcccchHHHHHHHHHHHhccCCeEEEECCCCHHHHHHHHHcCCCEEE
Confidence 34455555566666766 899988888742 11100 01223456667766556666664 6667777654
No 168
>2i5g_A Amidohydrolase; NYSGXRC, NYSGXRC-9311A, PSI2, structural genomics, protein structure initiative; 2.60A {Pseudomonas aeruginosa}
Probab=29.01 E-value=52 Score=31.05 Aligned_cols=124 Identities=17% Similarity=0.258 Sum_probs=66.8
Q ss_pred HHHHHHHHCCCcEEEEeeecCCCC------CCchHHHH-HHHHHHHHhhCCCCceeee----------ec-ccccccccc
Q 019890 164 NVAEAIASWGLDYVVITSVDRDDL------ADQGSGHF-AQTVRKLKELKPNMLIEAL----------VA-KSGLNVFAH 225 (334)
Q Consensus 164 ~~A~av~~~GlkeVVLTSv~rdDl------~d~Ga~~f-a~lIr~Ik~~~P~i~vE~L----------l~-~ag~dv~~H 225 (334)
...+.+.++|++++-||=-....+ .++|-..| .++|+++.+. ++.|.+. +. ...|=++.|
T Consensus 103 ~~l~~~y~lGvR~~~Lt~n~~N~~~~g~~~~~~GLT~~G~~vV~emnrl--GmivDlSH~s~~~~~dvl~~s~~Pvi~SH 180 (325)
T 2i5g_A 103 GYVEVFKQLGVGIVQMCYNTQNLVGTGCYERDGGLSGFGREIVAEMNRV--GIMCDLSHVGSKTSEEVILESKKPVCYSH 180 (325)
T ss_dssp HHHHHHHHTTEEEEESCCSSBCSSCBBTTSCCCCCCHHHHHHHHHHHHH--TCEEECTTBCHHHHHHHHHHCSSCCEEEE
T ss_pred HHHHHHHHcCCeEEEeeccCCCCCCCCCCCCCCCCCHHHHHHHHHHHHc--CcEEEcCcCCHHHHHHHHHHhCCCEEEeC
Confidence 356777899999999982111001 23333222 5677777765 4544443 11 113334555
Q ss_pred chhhHHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCcceEeeceEEec-----CCCHHHHHHHHHHHHH-cCCcEEeeccC
Q 019890 226 NIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC-----GETPDQVVSTMEKVRA-AGVDVMTFGQY 299 (334)
Q Consensus 226 nlETv~~l~~~Vr~r~~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGl-----GETdEE~~etl~~Lre-~gvd~vtigqY 299 (334)
.- ++.+.+. ++.- +-+.|+.+.+. +|+ +.-.+.-+| .-|.+++.++++.+.+ +|+|+|.||.=
T Consensus 181 sn--~~al~~h---~RNl---~De~irala~~--GGv-igv~~~~~fl~~~~~~t~~~~~~hi~~i~~~~G~dhVgiGsD 249 (325)
T 2i5g_A 181 CL--PSGLKEH---PRNK---SDEELKFIADH--GGF-VGVTMFAPFLKKGIDSTIDDYAEAIEYVMNIVGEDAIGIGTD 249 (325)
T ss_dssp EC--BTTTCCC---TTSB---CHHHHHHHHHT--TCE-EEECCCGGGSSSGGGCBHHHHHHHHHHHHHHHCTTSEEECCC
T ss_pred CC--ccccCCC---CCCC---CHHHHHHHHHc--CCe-EEEeecchhcCCCCCCCHHHHHHHHHHHHHhcCCceEEECCc
Confidence 31 1112211 1122 23555666564 343 433333333 3578999999998765 49999999964
Q ss_pred c
Q 019890 300 M 300 (334)
Q Consensus 300 l 300 (334)
.
T Consensus 250 f 250 (325)
T 2i5g_A 250 F 250 (325)
T ss_dssp B
T ss_pred C
Confidence 4
No 169
>3tha_A Tryptophan synthase alpha chain; structural genomics, center for structural genomics of infec diseases, csgid, lyase; 2.37A {Campylobacter jejuni}
Probab=28.95 E-value=13 Score=34.22 Aligned_cols=58 Identities=10% Similarity=0.200 Sum_probs=34.3
Q ss_pred HHhhcCCCCCHHHHHHHHHHHHHhCCCcceEeeceEEecCCCHHHHHHHHHHHHHcCCcEEeec
Q 019890 234 QSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFG 297 (334)
Q Consensus 234 ~~~Vr~r~~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGlGETdEE~~etl~~Lre~gvd~vtig 297 (334)
.+.+. .+.+.++.++.++++|+..|-.+.+.-..++-.| +.+.+++++++|+|-+=|.
T Consensus 66 ~rAL~-~g~~~~~~~~~~~~~r~~~Pivlm~Y~N~i~~~G-----~e~F~~~~~~aGvdG~Iip 123 (252)
T 3tha_A 66 KIALD-QGVDIHSVFELLARIKTKKALVFMVYYNLIFSYG-----LEKFVKKAKSLGICALIVP 123 (252)
T ss_dssp HHHHH-TTCCHHHHHHHHHHCCCSSEEEEECCHHHHHHHC-----HHHHHHHHHHTTEEEEECT
T ss_pred HHHHH-CCCCHHHHHHHHHHHhcCCCEEEEeccCHHHHhh-----HHHHHHHHHHcCCCEEEeC
Confidence 34445 4778888888888877532221111112222223 5667888888898888775
No 170
>3obe_A Sugar phosphate isomerase/epimerase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.70A {Parabacteroides distasonis}
Probab=28.88 E-value=91 Score=28.13 Aligned_cols=43 Identities=9% Similarity=-0.007 Sum_probs=26.5
Q ss_pred HHHHHHHHhCCCcceEeeceEEecC-CCHHHHHHHHHHHHHcCCcEE
Q 019890 249 DVLMMAKDYVPAGTLTKTSIMLGCG-ETPDQVVSTMEKVRAAGVDVM 294 (334)
Q Consensus 249 ~vL~~ak~~~p~Gl~tkTgiMVGlG-ETdEE~~etl~~Lre~gvd~v 294 (334)
+.++.....+.. +.++=... +| +-.-++...++.|++.|++-.
T Consensus 231 ~~i~~~~~ri~~-vHlkD~~~--~G~~G~id~~~i~~~L~~~gy~G~ 274 (305)
T 3obe_A 231 EWMENYPNRFKL-LHIKDRWI--IGDSGMMNFPNIFKKAYEIGILGY 274 (305)
T ss_dssp HHHHHSTTTEEE-EEECCSSS--TTCSSSBCHHHHHHHHHHHTCCEE
T ss_pred HHHHHhhCceeE-EEeccCcC--CCCCCccCHHHHHHHHHHcCCCEE
Confidence 444444433333 45554233 35 556678899999999999853
No 171
>2hmc_A AGR_L_411P, dihydrodipicolinate synthase; alpha-beta barrel (TIM barrel), structural genomics, PSI-2, structure initiative; HET: MSE; 1.90A {Agrobacterium tumefaciens str}
Probab=28.61 E-value=2.9e+02 Score=25.98 Aligned_cols=132 Identities=14% Similarity=0.119 Sum_probs=78.9
Q ss_pred CCCCchhHHHHHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhCCCCceeeeeccccccccccchhhHHHHH
Q 019890 155 PPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVAKSGLNVFAHNIETVEELQ 234 (334)
Q Consensus 155 ~~ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~P~i~vE~Ll~~ag~dv~~HnlETv~~l~ 234 (334)
..+|.+...+.++.+.+.|++-+++.|-+.. ......+...++++. .... .+-|+.+-
T Consensus 42 g~ID~~~l~~lv~~li~~Gv~Gl~v~GtTGE-~~~Ls~eEr~~vi~~--~~~g-----------rvpViaGv-------- 99 (344)
T 2hmc_A 42 RTPDFDALVRKGKELIADGMSAVVYCGSMGD-WPLLTDEQRMEGVER--LVKA-----------GIPVIVGT-------- 99 (344)
T ss_dssp SSBCHHHHHHHHHHHHHTTCCCEEESSGGGT-GGGSCHHHHHHHHHH--HHHT-----------TCCEEEEC--------
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEeCccCcC-hhhCCHHHHHHHHHH--HhCC-----------CCcEEEec--------
Confidence 4688899999999999999998888765421 111112223344443 1111 11222221
Q ss_pred HhhcCCCCCHHHHHHHHHHHHHhCCCcceEeeceEEecC-CCHHHHHHHHHHHHHcCCcEEeeccCcCCCCCCCcccccC
Q 019890 235 SAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCG-ETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMPVSEYI 313 (334)
Q Consensus 235 ~~Vr~r~~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGlG-ETdEE~~etl~~Lre~gvd~vtigqYlrP~~~h~~v~~yv 313 (334)
-..+.++.++..+.+.+.--+|+.+-+-.. +. -|++++.+.++.+.+..++ ++|.-|-.| ... -.+
T Consensus 100 -----g~~st~eai~la~~A~~~Gadavlv~~P~y--~~~~s~~~l~~~f~~IA~aa~~-lPiilYn~P-~tg----~~l 166 (344)
T 2hmc_A 100 -----GAVNTASAVAHAVHAQKVGAKGLMVIPRVL--SRGSVIAAQKAHFKAILSAAPE-IPAVIYNSP-YYG----FAT 166 (344)
T ss_dssp -----CCSSHHHHHHHHHHHHHHTCSEEEECCCCS--SSTTCHHHHHHHHHHHHHHSTT-SCEEEEEBG-GGT----BCC
T ss_pred -----CCCCHHHHHHHHHHHHhcCCCEEEECCCcc--CCCCCHHHHHHHHHHHHhhCCC-CcEEEEecC-ccC----CCc
Confidence 134677888888888887444333333222 13 5899999999999883233 566667767 332 246
Q ss_pred CHHHHHHH
Q 019890 314 TPEAFERY 321 (334)
Q Consensus 314 ~P~~f~~~ 321 (334)
+|+.+.++
T Consensus 167 ~~e~~~~L 174 (344)
T 2hmc_A 167 RADLFFAL 174 (344)
T ss_dssp CHHHHHHH
T ss_pred CHHHHHHH
Confidence 77777766
No 172
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=28.18 E-value=1.6e+02 Score=23.61 Aligned_cols=40 Identities=18% Similarity=0.073 Sum_probs=26.6
Q ss_pred HHHHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhCC
Q 019890 163 TNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKP 207 (334)
Q Consensus 163 ~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~P 207 (334)
++.++++.+.+.+-|.|.+.. ......+.+++++|++..+
T Consensus 44 e~~v~~a~~~~~d~v~lS~~~-----~~~~~~~~~~i~~l~~~g~ 83 (137)
T 1ccw_A 44 ELFIKAAIETKADAILVSSLY-----GQGEIDCKGLRQKCDEAGL 83 (137)
T ss_dssp HHHHHHHHHHTCSEEEEEECS-----STHHHHHTTHHHHHHHTTC
T ss_pred HHHHHHHHhcCCCEEEEEecC-----cCcHHHHHHHHHHHHhcCC
Confidence 444455567788888887754 2234567889999988644
No 173
>2vc6_A MOSA, dihydrodipicolinate synthase; DHDPS, TIM barrel, schiff base, lyase; HET: MCL; 1.95A {Sinorhizobium meliloti}
Probab=28.11 E-value=1.6e+02 Score=26.84 Aligned_cols=137 Identities=14% Similarity=0.081 Sum_probs=83.0
Q ss_pred CCCCchhHHHHHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhCCCCceeeeeccccccccccchhhHHHHH
Q 019890 155 PPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVAKSGLNVFAHNIETVEELQ 234 (334)
Q Consensus 155 ~~ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~P~i~vE~Ll~~ag~dv~~HnlETv~~l~ 234 (334)
..+|.+...+.++.+.+.|++-+++.|-+.. .+....+.-.++++.+.+...+ ..-++.+-
T Consensus 16 g~iD~~~l~~lv~~li~~Gv~gl~~~GttGE-~~~Ls~~Er~~v~~~~~~~~~g----------r~pviaGv-------- 76 (292)
T 2vc6_A 16 DRIDEVALHDLVEWQIEEGSFGLVPCGTTGE-SPTLSKSEHEQVVEITIKTANG----------RVPVIAGA-------- 76 (292)
T ss_dssp TEECHHHHHHHHHHHHHTTCSEEETTSGGGT-GGGSCHHHHHHHHHHHHHHHTT----------SSCBEEEC--------
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEECccccC-hhhCCHHHHHHHHHHHHHHhCC----------CCcEEEec--------
Confidence 3588899999999999999999888665421 1111223344566655543211 12233322
Q ss_pred HhhcCCCCCHHHHHHHHHHHHHhCCCcceEeeceEEecCCCHHHHHHHHHHHHHcCCcEEeeccCcCCCCCCCcccccCC
Q 019890 235 SAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMPVSEYIT 314 (334)
Q Consensus 235 ~~Vr~r~~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGlGETdEE~~etl~~Lre~gvd~vtigqYlrP~~~h~~v~~yv~ 314 (334)
-..+.++.++..+++.+.--+|+.+-+-.. +.-|++++.+.++.+.+.- + ++|.-|--|.... --++
T Consensus 77 -----g~~~t~~ai~la~~A~~~Gadavlv~~P~y--~~~s~~~l~~~f~~ia~a~-~-lPiilYn~P~~tg----~~l~ 143 (292)
T 2vc6_A 77 -----GSNSTAEAIAFVRHAQNAGADGVLIVSPYY--NKPTQEGIYQHFKAIDAAS-T-IPIIVYNIPGRSA----IEIH 143 (292)
T ss_dssp -----CCSSHHHHHHHHHHHHHTTCSEEEEECCCS--SCCCHHHHHHHHHHHHHHC-S-SCEEEEECHHHHS----CCCC
T ss_pred -----CCccHHHHHHHHHHHHHcCCCEEEEcCCCC--CCCCHHHHHHHHHHHHHhC-C-CCEEEEeCccccC----cCCC
Confidence 134667888888898886444333333322 1458999999999988752 2 5666676665322 2456
Q ss_pred HHHHHHHHH
Q 019890 315 PEAFERYRA 323 (334)
Q Consensus 315 P~~f~~~~~ 323 (334)
|+.+.++.+
T Consensus 144 ~~~~~~La~ 152 (292)
T 2vc6_A 144 VETLARIFE 152 (292)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 776666643
No 174
>3flu_A DHDPS, dihydrodipicolinate synthase; TIM barrel, beta-alpha-barrel, amino-acid biosynthesis, diaminopimelate biosynthesis; 2.00A {Neisseria meningitidis serogroup B} SCOP: c.1.10.0
Probab=27.98 E-value=1.4e+02 Score=27.39 Aligned_cols=136 Identities=11% Similarity=0.088 Sum_probs=82.7
Q ss_pred CCCCchhHHHHHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhCCCCceeeeeccccccccccchhhHHHHH
Q 019890 155 PPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVAKSGLNVFAHNIETVEELQ 234 (334)
Q Consensus 155 ~~ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~P~i~vE~Ll~~ag~dv~~HnlETv~~l~ 234 (334)
..+|.+...+.++.+.+.|++-+++.|.+.. ......+.-.++++.+.+...+ .+-++.+-
T Consensus 23 g~iD~~~l~~lv~~li~~Gv~gl~~~GttGE-~~~Ls~~Er~~v~~~~~~~~~g----------rvpviaGv-------- 83 (297)
T 3flu_A 23 GSIHYEQLRDLIDWHIENGTDGIVAVGTTGE-SATLSVEEHTAVIEAVVKHVAK----------RVPVIAGT-------- 83 (297)
T ss_dssp SCBCHHHHHHHHHHHHHTTCCEEEESSTTTT-GGGSCHHHHHHHHHHHHHHHTT----------SSCEEEEC--------
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEeCccccC-cccCCHHHHHHHHHHHHHHhCC----------CCcEEEeC--------
Confidence 4689999999999999999999988775431 2211223344566655543211 12233322
Q ss_pred HhhcCCCCCHHHHHHHHHHHHHhCCCcceEeeceEEecCCCHHHHHHHHHHHHHcCCcEEeeccCcCCCCCCCcccccCC
Q 019890 235 SAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMPVSEYIT 314 (334)
Q Consensus 235 ~~Vr~r~~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGlGETdEE~~etl~~Lre~gvd~vtigqYlrP~~~h~~v~~yv~ 314 (334)
-..+.++.++..+++.+.--+|+.+-+-.. +.-|++++.+.++.+.+.- -++|.-|--|.... ..++
T Consensus 84 -----g~~~t~~ai~la~~a~~~Gadavlv~~P~y--~~~~~~~l~~~f~~va~a~--~lPiilYn~P~~tg----~~l~ 150 (297)
T 3flu_A 84 -----GANNTVEAIALSQAAEKAGADYTLSVVPYY--NKPSQEGIYQHFKTIAEAT--SIPMIIYNVPGRTV----VSMT 150 (297)
T ss_dssp -----CCSSHHHHHHHHHHHHHTTCSEEEEECCCS--SCCCHHHHHHHHHHHHHHC--CSCEEEEECHHHHS----SCCC
T ss_pred -----CCcCHHHHHHHHHHHHHcCCCEEEECCCCC--CCCCHHHHHHHHHHHHHhC--CCCEEEEECCchhc----cCCC
Confidence 235678888999999887333333322221 2558999999999998753 35666676664322 2345
Q ss_pred HHHHHHHH
Q 019890 315 PEAFERYR 322 (334)
Q Consensus 315 P~~f~~~~ 322 (334)
|+.+.++.
T Consensus 151 ~~~~~~La 158 (297)
T 3flu_A 151 NDTILRLA 158 (297)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHH
Confidence 66555543
No 175
>3lub_A Putative creatinine amidohydrolase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 2.11A {Bacteroides fragilis}
Probab=27.78 E-value=1e+02 Score=27.85 Aligned_cols=52 Identities=19% Similarity=0.272 Sum_probs=37.0
Q ss_pred CCCchhH----HHHHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhCCCCceeee
Q 019890 156 PPDPDEP----TNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEAL 214 (334)
Q Consensus 156 ~ld~~Ep----~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~P~i~vE~L 214 (334)
.++++.. .++++.+.+.|++.+||..++.+. . +..++++++...|++.+-.+
T Consensus 89 sl~~~tl~~~l~di~~sl~~~G~rrlvivNgHGGN------~-l~~a~~~l~~~~~~~~v~~~ 144 (254)
T 3lub_A 89 HTRYATQQAILEDIVSSLHVQGFRKLLILSGHGGN------N-FKGMIRDLAFEYPDFLIAAA 144 (254)
T ss_dssp BCCHHHHHHHHHHHHHHHHHTTCCEEEEEESCTTC------C-CHHHHHHHHHHCTTCEEEEE
T ss_pred EeCHHHHHHHHHHHHHHHHHcCCCEEEEEeCCchH------H-HHHHHHHHHHHCCCcEEEEe
Confidence 4666654 456667888999999998776432 2 67788889888877655444
No 176
>3phb_E Purine nucleoside phosphorylase; PNP,immucillin, transferase-transferase inhibitor complex; HET: IM5; 2.30A {Homo sapiens}
Probab=27.60 E-value=80 Score=29.97 Aligned_cols=26 Identities=19% Similarity=0.124 Sum_probs=20.3
Q ss_pred CchhHHHHHHHHHHCCCcEEEEeeec
Q 019890 158 DPDEPTNVAEAIASWGLDYVVITSVD 183 (334)
Q Consensus 158 d~~Ep~~~A~av~~~GlkeVVLTSv~ 183 (334)
++.++.--++.++.+|++.|+.|+.-
T Consensus 127 ~~~~V~~~~~ll~~lGv~~II~tgaa 152 (324)
T 3phb_E 127 PLWKVTFPVRVFHLLGVDTLVVTNAA 152 (324)
T ss_dssp CHHHHTHHHHHHHHHTCCEEEEEEEE
T ss_pred ChHHHHHHHHHHHHcCCCEEEEecce
Confidence 56665555678899999999999854
No 177
>3qze_A DHDPS, dihydrodipicolinate synthase; alpha beta barrel, cytoplasmic; 1.59A {Pseudomonas aeruginosa} PDB: 3puo_A* 3noe_A 3ps7_A* 3s8h_A
Probab=27.58 E-value=1.5e+02 Score=27.43 Aligned_cols=136 Identities=16% Similarity=0.141 Sum_probs=82.2
Q ss_pred CCCCchhHHHHHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhCCCCceeeeeccccccccccchhhHHHHH
Q 019890 155 PPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVAKSGLNVFAHNIETVEELQ 234 (334)
Q Consensus 155 ~~ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~P~i~vE~Ll~~ag~dv~~HnlETv~~l~ 234 (334)
..+|.+...+.++.+.+.|++-+++.|-+.. ......+.-.++++.+.+...+ .+-|+.+-
T Consensus 39 g~iD~~~l~~lv~~li~~Gv~Gl~v~GtTGE-~~~Ls~~Er~~v~~~~v~~~~g----------rvpViaGv-------- 99 (314)
T 3qze_A 39 GRLDWDSLAKLVDFHLQEGTNAIVAVGTTGE-SATLDVEEHIQVIRRVVDQVKG----------RIPVIAGT-------- 99 (314)
T ss_dssp SCBCHHHHHHHHHHHHHHTCCEEEESSGGGT-GGGCCHHHHHHHHHHHHHHHTT----------SSCEEEEC--------
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEECccccC-hhhCCHHHHHHHHHHHHHHhCC----------CCcEEEeC--------
Confidence 4689999999999999999999988775421 1111223344556555443211 12233322
Q ss_pred HhhcCCCCCHHHHHHHHHHHHHhCCCcceEeeceEEecCCCHHHHHHHHHHHHHcCCcEEeeccCcCCCCCCCcccccCC
Q 019890 235 SAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMPVSEYIT 314 (334)
Q Consensus 235 ~~Vr~r~~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGlGETdEE~~etl~~Lre~gvd~vtigqYlrP~~~h~~v~~yv~ 314 (334)
-..+.++.++..+.+.+.--+|+.+-+-.- +.-|++++.+.++.+.+.= -++|.-|--|... -..++
T Consensus 100 -----g~~st~eai~la~~A~~~Gadavlv~~P~y--~~~s~~~l~~~f~~va~a~--~lPiilYn~P~~t----g~~l~ 166 (314)
T 3qze_A 100 -----GANSTREAVALTEAAKSGGADACLLVTPYY--NKPTQEGMYQHFRHIAEAV--AIPQILYNVPGRT----SCDML 166 (314)
T ss_dssp -----CCSSHHHHHHHHHHHHHTTCSEEEEECCCS--SCCCHHHHHHHHHHHHHHS--CSCEEEEECHHHH----SCCCC
T ss_pred -----CCcCHHHHHHHHHHHHHcCCCEEEEcCCCC--CCCCHHHHHHHHHHHHHhc--CCCEEEEeCcccc----CCCCC
Confidence 234678888999999887333332222211 1558999999999998752 3566667656432 12456
Q ss_pred HHHHHHHH
Q 019890 315 PEAFERYR 322 (334)
Q Consensus 315 P~~f~~~~ 322 (334)
|+.+.++.
T Consensus 167 ~~~~~~La 174 (314)
T 3qze_A 167 PETVERLS 174 (314)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 66666554
No 178
>1o5k_A DHDPS, dihydrodipicolinate synthase; TM1521, structural genomics, J protein structure initiative, joint center for structural G lyase; HET: MCL; 1.80A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 3pb2_A 3pb0_A
Probab=27.02 E-value=2e+02 Score=26.38 Aligned_cols=136 Identities=13% Similarity=0.147 Sum_probs=83.5
Q ss_pred CCCCchhHHHHHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhCCCCceeeeeccccccccccchhhHHHHH
Q 019890 155 PPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVAKSGLNVFAHNIETVEELQ 234 (334)
Q Consensus 155 ~~ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~P~i~vE~Ll~~ag~dv~~HnlETv~~l~ 234 (334)
..+|.+...+.++.+.+.|++-+++.|-+.. .+....+.-.++++.+.+...+ .+-++.+-
T Consensus 28 g~iD~~~l~~lv~~li~~Gv~gl~v~GtTGE-~~~Ls~eEr~~vi~~~~~~~~g----------rvpViaGv-------- 88 (306)
T 1o5k_A 28 GELDLESYERLVRYQLENGVNALIVLGTTGE-SPTVNEDEREKLVSRTLEIVDG----------KIPVIVGA-------- 88 (306)
T ss_dssp TEECHHHHHHHHHHHHHTTCCEEEESSGGGT-GGGCCHHHHHHHHHHHHHHHTT----------SSCEEEEC--------
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEeCccccc-hhhCCHHHHHHHHHHHHHHhCC----------CCeEEEcC--------
Confidence 3688999999999999999999988775421 1111223344556655543211 12233322
Q ss_pred HhhcCCCCCHHHHHHHHHHHHHhCCCcceEeeceEEecCCCHHHHHHHHHHHHHcCCcEEeeccCcCCCCCCCcccccCC
Q 019890 235 SAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMPVSEYIT 314 (334)
Q Consensus 235 ~~Vr~r~~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGlGETdEE~~etl~~Lre~gvd~vtigqYlrP~~~h~~v~~yv~ 314 (334)
-..+.++.++..+.+++.--+|+.+-+-... .-|++++.+.++.+.+.- + ++|.-|--|.... --++
T Consensus 89 -----g~~st~~ai~la~~A~~~Gadavlv~~P~y~--~~s~~~l~~~f~~va~a~-~-lPiilYn~P~~tg----~~l~ 155 (306)
T 1o5k_A 89 -----GTNSTEKTLKLVKQAEKLGANGVLVVTPYYN--KPTQEGLYQHYKYISERT-D-LGIVVYNVPGRTG----VNVL 155 (306)
T ss_dssp -----CCSCHHHHHHHHHHHHHHTCSEEEEECCCSS--CCCHHHHHHHHHHHHTTC-S-SCEEEEECHHHHS----CCCC
T ss_pred -----CCccHHHHHHHHHHHHhcCCCEEEECCCCCC--CCCHHHHHHHHHHHHHhC-C-CCEEEEeCccccC----cCCC
Confidence 1346778888899998874444433333222 448999999999998752 3 5666676675322 2456
Q ss_pred HHHHHHHH
Q 019890 315 PEAFERYR 322 (334)
Q Consensus 315 P~~f~~~~ 322 (334)
|+.+.++.
T Consensus 156 ~~~~~~La 163 (306)
T 1o5k_A 156 PETAARIA 163 (306)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77666664
No 179
>3eeg_A 2-isopropylmalate synthase; 11106D, beta barrel, PSI-II, structural genomics, protein structure initiative; 2.78A {Cytophaga hutchinsonii atcc 33406}
Probab=26.76 E-value=95 Score=29.10 Aligned_cols=49 Identities=18% Similarity=0.165 Sum_probs=36.8
Q ss_pred CCCchhHHHHHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhCCC
Q 019890 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPN 208 (334)
Q Consensus 156 ~ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~P~ 208 (334)
..+++...++++++.++|...|.|--- ..-.-...+.++|++|++..|+
T Consensus 147 ~~~~~~~~~~~~~~~~~G~~~i~l~DT----~G~~~P~~v~~lv~~l~~~~~~ 195 (325)
T 3eeg_A 147 RADQAFLARMVEAVIEAGADVVNIPDT----TGYMLPWQYGERIKYLMDNVSN 195 (325)
T ss_dssp GSCHHHHHHHHHHHHHHTCSEEECCBS----SSCCCHHHHHHHHHHHHHHCSC
T ss_pred cchHHHHHHHHHHHHhcCCCEEEecCc----cCCcCHHHHHHHHHHHHHhCCC
Confidence 367899999999999999998877221 1112246788999999998875
No 180
>3r2g_A Inosine 5'-monophosphate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.94A {Legionella pneumophila subsp}
Probab=26.74 E-value=77 Score=30.46 Aligned_cols=118 Identities=17% Similarity=0.271 Sum_probs=67.3
Q ss_pred chhHHHHHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhCCCCcee---ee-------eccccccccc---c
Q 019890 159 PDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIE---AL-------VAKSGLNVFA---H 225 (334)
Q Consensus 159 ~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~P~i~vE---~L-------l~~ag~dv~~---H 225 (334)
.+...+.++++.+.|++.|+|-+-. +-..++.+.|+.|++..|++.|= +. +.++|.|.+. |
T Consensus 98 ~~~~~e~~~~a~~aGvdvI~id~a~------G~~~~~~e~I~~ir~~~~~~~Vi~G~V~T~e~A~~a~~aGaD~I~Vg~g 171 (361)
T 3r2g_A 98 TENELQRAEALRDAGADFFCVDVAH------AHAKYVGKTLKSLRQLLGSRCIMAGNVATYAGADYLASCGADIIKAGIG 171 (361)
T ss_dssp SHHHHHHHHHHHHTTCCEEEEECSC------CSSHHHHHHHHHHHHHHTTCEEEEEEECSHHHHHHHHHTTCSEEEECCS
T ss_pred CHHHHHHHHHHHHcCCCEEEEeCCC------CCcHhHHHHHHHHHHhcCCCeEEEcCcCCHHHHHHHHHcCCCEEEEcCC
Confidence 3556778888899999977773322 11246778999999877764332 22 6778888654 2
Q ss_pred c--hhhHHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCcceEeeceEE-ecCCCHHHHHHHHHHHHHcCCcEEeeccCc
Q 019890 226 N--IETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIML-GCGETPDQVVSTMEKVRAAGVDVMTFGQYM 300 (334)
Q Consensus 226 n--lETv~~l~~~Vr~r~~tye~sL~vL~~ak~~~p~Gl~tkTgiMV-GlGETdEE~~etl~~Lre~gvd~vtigqYl 300 (334)
. .-+ .+...-+ ... .+..|..+.+.. . -+|. |=--+.+|+...|. +|.|.|-+|..+
T Consensus 172 ~G~~~~-tr~~~g~---g~p---~l~aI~~~~~~~----~---PVIAdGGI~~~~di~kALa----~GAd~V~iGr~f 231 (361)
T 3r2g_A 172 GGSVCS-TRIKTGF---GVP---MLTCIQDCSRAD----R---SIVADGGIKTSGDIVKALA----FGADFVMIGGML 231 (361)
T ss_dssp SSSCHH-HHHHHCC---CCC---HHHHHHHHTTSS----S---EEEEESCCCSHHHHHHHHH----TTCSEEEESGGG
T ss_pred CCcCcc-ccccCCc---cHH---HHHHHHHHHHhC----C---CEEEECCCCCHHHHHHHHH----cCCCEEEEChHH
Confidence 1 101 1111111 111 345555554421 1 2222 22246777776664 799999999765
No 181
>1y0e_A Putative N-acetylmannosamine-6-phosphate 2-epimer; mannac-6-P epimerase, NANE, structural genomics, protein STR initiative, PSI; 1.95A {Staphylococcus aureus subsp} SCOP: c.1.2.5
Probab=26.62 E-value=2.9e+02 Score=23.30 Aligned_cols=118 Identities=13% Similarity=0.208 Sum_probs=63.5
Q ss_pred HHHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhCCCCce--eee-------eccccccccccchhhHHHHH
Q 019890 164 NVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLI--EAL-------VAKSGLNVFAHNIETVEELQ 234 (334)
Q Consensus 164 ~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~P~i~v--E~L-------l~~ag~dv~~HnlETv~~l~ 234 (334)
+.++.+.+.|.+.|+|-+....+ ++ ..+.++++.+++..|+..+ .+. +.+.|.|.+..+. .-+
T Consensus 79 ~~i~~~~~~Gad~v~l~~~~~~~-p~---~~~~~~i~~~~~~~~~~~v~~~~~t~~e~~~~~~~G~d~i~~~~----~g~ 150 (223)
T 1y0e_A 79 KEVDELIESQCEVIALDATLQQR-PK---ETLDELVSYIRTHAPNVEIMADIATVEEAKNAARLGFDYIGTTL----HGY 150 (223)
T ss_dssp HHHHHHHHHTCSEEEEECSCSCC-SS---SCHHHHHHHHHHHCTTSEEEEECSSHHHHHHHHHTTCSEEECTT----TTS
T ss_pred HHHHHHHhCCCCEEEEeeecccC-cc---cCHHHHHHHHHHhCCCceEEecCCCHHHHHHHHHcCCCEEEeCC----CcC
Confidence 34455677899998886544211 21 2357889999988776432 221 4556666653221 000
Q ss_pred HhhcCCCC-CHHHHHHHHHHHHHhCCCcceEeeceEEecCC-CHHHHHHHHHHHHHcCCcEEeeccCc
Q 019890 235 SAVRDHRA-NFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGE-TPDQVVSTMEKVRAAGVDVMTFGQYM 300 (334)
Q Consensus 235 ~~Vr~r~~-tye~sL~vL~~ak~~~p~Gl~tkTgiMVGlGE-TdEE~~etl~~Lre~gvd~vtigqYl 300 (334)
.... +.. .....++.++++++... +. +|+.=|= |.+++.+.+ +.|+|.+-+|..+
T Consensus 151 t~~~-~~~~~~~~~~~~~~~~~~~~~--ip----via~GGI~~~~~~~~~~----~~Gad~v~vG~al 207 (223)
T 1y0e_A 151 TSYT-QGQLLYQNDFQFLKDVLQSVD--AK----VIAEGNVITPDMYKRVM----DLGVHCSVVGGAI 207 (223)
T ss_dssp STTS-TTCCTTHHHHHHHHHHHHHCC--SE----EEEESSCCSHHHHHHHH----HTTCSEEEECHHH
T ss_pred cCCC-CCCCCCcccHHHHHHHHhhCC--CC----EEEecCCCCHHHHHHHH----HcCCCEEEEChHH
Confidence 0000 111 13345778888877531 22 2221143 666665544 5699999998543
No 182
>1w3i_A EDA, 2-keto-3-deoxy gluconate aldolase; archaeal metabolism, pyruvate; 1.7A {Sulfolobus solfataricus} SCOP: c.1.10.1 PDB: 1w37_A 1w3n_A* 1w3t_A* 2yda_A*
Probab=26.59 E-value=3.5e+02 Score=24.51 Aligned_cols=118 Identities=10% Similarity=0.134 Sum_probs=75.3
Q ss_pred CCCCchhHHHHHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhCCCCceeeeeccccccccccchhhHHHHH
Q 019890 155 PPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVAKSGLNVFAHNIETVEELQ 234 (334)
Q Consensus 155 ~~ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~P~i~vE~Ll~~ag~dv~~HnlETv~~l~ 234 (334)
..+|.+...+.++.+.+.|++-+++.|-+. .......+.-.++++.+.+... | ++.+-
T Consensus 15 g~iD~~~l~~lv~~li~~Gv~gl~~~GttG-E~~~Ls~eEr~~v~~~~~~~~~-----------g--viaGv-------- 72 (293)
T 1w3i_A 15 NRIDKEKLKIHAENLIRKGIDKLFVNGTTG-LGPSLSPEEKLENLKAVYDVTN-----------K--IIFQV-------- 72 (293)
T ss_dssp SSBCHHHHHHHHHHHHHTTCCEEEESSTTT-TGGGSCHHHHHHHHHHHHTTCS-----------C--EEEEC--------
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEECcccc-ChhhCCHHHHHHHHHHHHHHcC-----------C--EEEec--------
Confidence 468999999999999999999998877542 1222222344567776665422 2 33322
Q ss_pred HhhcCCCCCHHHHHHHHHHHHHhCCCcceEeeceEEecC-CCHHHHHHHHHHHHHcCCcEEeeccCcCCC
Q 019890 235 SAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCG-ETPDQVVSTMEKVRAAGVDVMTFGQYMRPS 303 (334)
Q Consensus 235 ~~Vr~r~~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGlG-ETdEE~~etl~~Lre~gvd~vtigqYlrP~ 303 (334)
-..+.++.++..+++++.--+|+.+-+-... . -|++++.+.++.+.+.- + ++|.-|--|.
T Consensus 73 -----g~~~t~~ai~la~~A~~~Gadavlv~~P~y~--~~~s~~~l~~~f~~va~a~-~-lPiilYn~P~ 133 (293)
T 1w3i_A 73 -----GGLNLDDAIRLAKLSKDFDIVGIASYAPYYY--PRMSEKHLVKYFKTLCEVS-P-HPVYLYNYPT 133 (293)
T ss_dssp -----CCSCHHHHHHHHHHGGGSCCSEEEEECCCSC--SSCCHHHHHHHHHHHHHHC-S-SCEEEEECHH
T ss_pred -----CCCCHHHHHHHHHHHHhcCCCEEEEcCCCCC--CCCCHHHHHHHHHHHHhhC-C-CCEEEEECch
Confidence 2346777888888888763333333333222 3 58999999999988752 2 4666676664
No 183
>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp}
Probab=26.42 E-value=2.2e+02 Score=25.44 Aligned_cols=108 Identities=14% Similarity=0.095 Sum_probs=62.6
Q ss_pred CCchhHHHHHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhCCCCceeeeeccccccccccchhhHHHHHHh
Q 019890 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVAKSGLNVFAHNIETVEELQSA 236 (334)
Q Consensus 157 ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~P~i~vE~Ll~~ag~dv~~HnlETv~~l~~~ 236 (334)
++.+...+.++.+.+.|.+-..+. . |+.| .+...++++++.+.+. .+.+|+..+|........|+.+.-+.+
T Consensus 41 ~~~~~~~~~~~~l~~~g~~~~~~~-~---Dv~~--~~~v~~~~~~~~~~~G--~iDiLVNNAG~~~~~~~~~~~~e~~~~ 112 (255)
T 4g81_D 41 IRATLLAESVDTLTRKGYDAHGVA-F---DVTD--ELAIEAAFSKLDAEGI--HVDILINNAGIQYRKPMVELELENWQK 112 (255)
T ss_dssp SCHHHHHHHHHHHHHTTCCEEECC-C---CTTC--HHHHHHHHHHHHHTTC--CCCEEEECCCCCCCCCGGGCCHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCCcEEEEE-e---eCCC--HHHHHHHHHHHHHHCC--CCcEEEECCCCCCCCChhhCCHHHHHH
Confidence 356677778888888886644332 2 4665 3467788888877654 356677777765544444443333333
Q ss_pred hcC--CCCCHHHHHHHHHHHHHhCCCcceEeeceEEec
Q 019890 237 VRD--HRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC 272 (334)
Q Consensus 237 Vr~--r~~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGl 272 (334)
+-+ -...|.-...++..+++....|.++..+-+.|+
T Consensus 113 ~~~vNl~g~~~~~~~~~p~m~~~~~~G~IVnisS~~~~ 150 (255)
T 4g81_D 113 VIDTNLTSAFLVSRSAAKRMIARNSGGKIINIGSLTSQ 150 (255)
T ss_dssp HHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGT
T ss_pred HHHHHhHHHHHHHHHHHHHHHHccCCCEEEEEeehhhc
Confidence 210 123444445666666554344666766666666
No 184
>1rqb_A Transcarboxylase 5S subunit; TIM-barrel, carbamylated lysine, transfera; HET: KCX; 1.90A {Propionibacterium freudenreichii subspshermanii} SCOP: a.5.7.2 c.1.10.5 PDB: 1rqe_A 1rqh_A* 1rr2_A* 1u5j_A* 1s3h_A*
Probab=26.42 E-value=1.1e+02 Score=30.98 Aligned_cols=130 Identities=20% Similarity=0.282 Sum_probs=75.7
Q ss_pred CCchhHHHHHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhCC-CCceeee--------------ecccccc
Q 019890 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKP-NMLIEAL--------------VAKSGLN 221 (334)
Q Consensus 157 ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~P-~i~vE~L--------------l~~ag~d 221 (334)
-+++...++++++.++|.+.|+|---. .-.-...+.++|++|++..| ++.+++= -.++|.+
T Consensus 172 ~~~e~~~~~a~~l~~~Gad~I~L~DT~----G~~~P~~v~~lv~~l~~~~p~~i~I~~H~Hnd~GlAvAN~laAveAGa~ 247 (539)
T 1rqb_A 172 HTVEGYVKLAGQLLDMGADSIALKDMA----ALLKPQPAYDIIKAIKDTYGQKTQINLHCHSTTGVTEVSLMKAIEAGVD 247 (539)
T ss_dssp CCHHHHHHHHHHHHHTTCSEEEEEETT----CCCCHHHHHHHHHHHHHHHCTTCCEEEEEBCTTSCHHHHHHHHHHTTCS
T ss_pred CCHHHHHHHHHHHHHcCCCEEEeCCCC----CCcCHHHHHHHHHHHHHhcCCCceEEEEeCCCCChHHHHHHHHHHhCCC
Confidence 478999999999999999998883111 11124678899999998877 5555442 3345554
Q ss_pred ccc----------cc--hhhH-HHHHHh-hcCCCCCHHHHHHHHHHHHHhCCC-----c-ceEeeceE------------
Q 019890 222 VFA----------HN--IETV-EELQSA-VRDHRANFKQSLDVLMMAKDYVPA-----G-TLTKTSIM------------ 269 (334)
Q Consensus 222 v~~----------Hn--lETv-~~l~~~-Vr~r~~tye~sL~vL~~ak~~~p~-----G-l~tkTgiM------------ 269 (334)
++. -| +|++ ..|... +. .+.+.+...++-+.+.+.... | +.+.+.+.
T Consensus 248 ~VD~ti~g~GertGN~~lE~lv~~L~~~g~~-tgidl~~L~~is~~v~~~~~~~~~~~~~~~~~~~v~~he~pGG~~Snl 326 (539)
T 1rqb_A 248 VVDTAISSMSLGPGHNPTESVAEMLEGTGYT-TNLDYDRLHKIRDHFKAIRPKYKKFESKTLVDTSIFKSQIPGGMLSNM 326 (539)
T ss_dssp EEEEBCGGGCSTTSBCBHHHHHHHTTTSSEE-CCCCHHHHHHHHHHHHHHGGGGGGGCCSCSCCCTHHHHCCCHHHHHHH
T ss_pred EEEEeccccCCCccChhHHHHHHHHHhcCCC-chhhHHHHHHHHHHHHHHhCCCcCCCCCccCCCceEEecCCcchhhHH
Confidence 422 12 4543 333321 12 345666666555555443211 0 10111111
Q ss_pred ------EecCCCHHHHHHHHHHH-HHcCC
Q 019890 270 ------LGCGETPDQVVSTMEKV-RAAGV 291 (334)
Q Consensus 270 ------VGlGETdEE~~etl~~L-re~gv 291 (334)
.|+++-.+++.+.+..+ +.+|.
T Consensus 327 ~~q~~~~G~~~~~~~v~~~~~~v~~~~G~ 355 (539)
T 1rqb_A 327 ESQLRAQGAEDKMDEVMAEVPRVRKAAGF 355 (539)
T ss_dssp HHHHHTTSCCTTHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcCcHHHHHHHHHHHHHHHHHcCC
Confidence 27778888888888888 45565
No 185
>1s2w_A Phosphoenolpyruvate phosphomutase; phosphonopyruvate, phosphonate biosynthesis pathway, isomera; 1.69A {Mytilus edulis} SCOP: c.1.12.7 PDB: 1m1b_A 1s2t_A 1s2v_A 1pym_A 1s2u_A
Probab=26.14 E-value=2.5e+02 Score=26.00 Aligned_cols=76 Identities=16% Similarity=0.146 Sum_probs=49.9
Q ss_pred CCHHHHHHHHHHHHHhCCCcceEeeceEEecCCCHHHHHHHHHHHHHcCCcEEeec-cCcCCCCCCCcc--cccCCHHHH
Q 019890 242 ANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFG-QYMRPSKRHMPV--SEYITPEAF 318 (334)
Q Consensus 242 ~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGlGETdEE~~etl~~Lre~gvd~vtig-qYlrP~~~h~~v--~~yv~P~~f 318 (334)
.++++.+..++.+.+..+ +.+-.|+=.|||. .+++.++.+.+.+.|+.-|+|= |-..|..-|+.- ...++.+++
T Consensus 62 vt~~em~~~~~~I~~~~~--~PviaD~d~Gyg~-~~~v~~~v~~l~~aGaagv~iED~~~~k~cgH~gg~~k~l~p~~e~ 138 (295)
T 1s2w_A 62 ASWTQVVEVLEFMSDASD--VPILLDADTGYGN-FNNARRLVRKLEDRGVAGACLEDKLFPKTNSLHDGRAQPLADIEEF 138 (295)
T ss_dssp --CHHHHHHHHHHHHTCS--SCEEEECCSSCSS-HHHHHHHHHHHHHTTCCEEEEECBCC--------CTTCCBCCHHHH
T ss_pred CCHHHHHHHHHHHHhcCC--CCEEecCCCCCCC-HHHHHHHHHHHHHcCCcEEEECCCCCCccccccCCCCCcccCHHHH
Confidence 567777888888877544 4577788888884 6899999999999999999984 334555678874 566777665
Q ss_pred HH
Q 019890 319 ER 320 (334)
Q Consensus 319 ~~ 320 (334)
..
T Consensus 139 ~~ 140 (295)
T 1s2w_A 139 AL 140 (295)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 186
>2dsk_A Chitinase; catalytic domain, active domain, crystalline CHIT barrel, hydrolase; 1.50A {Pyrococcus furiosus} PDB: 3a4w_A* 3a4x_A* 3afb_A
Probab=26.01 E-value=3.7e+02 Score=25.09 Aligned_cols=132 Identities=10% Similarity=0.026 Sum_probs=66.6
Q ss_pred eEEEEee-cCCCCCCCCCcccCCCCCCCCCCchhHHHHHHHHHHCCCcEEEEeeecCCCC---CCchHHHHHHHHHHHHh
Q 019890 129 TATIMIL-GDTCTRGCRFCNVKTSRAPPPPDPDEPTNVAEAIASWGLDYVVITSVDRDDL---ADQGSGHFAQTVRKLKE 204 (334)
Q Consensus 129 Tatfm~i-gdgCtr~C~FC~V~~~r~p~~ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl---~d~Ga~~fa~lIr~Ik~ 204 (334)
+.+|+.. +.+|+ +...+. .+..++...+++++..|.+-++=.|+..+.. ....+..|++.+..+-+
T Consensus 39 ~lAFl~~~~g~c~--------p~w~g~--~~~~~~~~~I~~~q~~G~kVllSiGGa~Gs~~~~s~~~~~~~a~~~~~~i~ 108 (311)
T 2dsk_A 39 TLAFILYSSVYNG--------PAWAGS--IPLEKFVDEVRELREIGGEVIIAFGGAVGPYLCQQASTPEQLAEWYIKVID 108 (311)
T ss_dssp EEEEEEEETTTTE--------EEETTT--BCGGGGHHHHHHHHTTTCEEEEEEEESSCCCHHHHCSSHHHHHHHHHHHHH
T ss_pred EEEEEeccCCCCc--------ccCCCC--CchHHHHHHHHHHHHCCCeEEEEecCCCCccccccccCHHHHHHHHHHHHH
Confidence 8889984 44443 111111 2234566778888999988776677654321 01224556654433322
Q ss_pred hCCCCceeeeeccccccccccchhhHHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCcceEeeceEE---ecCCCHHHHHH
Q 019890 205 LKPNMLIEALVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIML---GCGETPDQVVS 281 (334)
Q Consensus 205 ~~P~i~vE~Ll~~ag~dv~~HnlETv~~l~~~Vr~r~~tye~sL~vL~~ak~~~p~Gl~tkTgiMV---GlGETdEE~~e 281 (334)
+.++|-+-.-+|.- ...++..+.|+.+++..|+ +.+..++=+ |+...- .+
T Consensus 109 ------------~ygldGIDfDiE~~-----------~~~d~~~~aL~~l~~~~p~-~~vs~TL~~~p~gl~~~g---~~ 161 (311)
T 2dsk_A 109 ------------TYNATYLDFDIEAG-----------IDADKLADALLIVQRERPW-VKFSFTLPSDPGIGLAGG---YG 161 (311)
T ss_dssp ------------HHTCSEEEEEECSC-----------CCHHHHHHHHHHHHHHSTT-CEEEEEEEEETTTEESTH---HH
T ss_pred ------------HhCCCcEEEeccCC-----------ccHHHHHHHHHHHHhhCCC-cEEEEEeccCCCCCCcch---HH
Confidence 22333333333310 1112334555566666665 666655444 332222 23
Q ss_pred HHHHHHHcC--CcEEeec
Q 019890 282 TMEKVRAAG--VDVMTFG 297 (334)
Q Consensus 282 tl~~Lre~g--vd~vtig 297 (334)
.|+..++.| +|.|.|-
T Consensus 162 ~l~~a~~~g~~ld~VniM 179 (311)
T 2dsk_A 162 IIETMAKKGVRVDRVNPM 179 (311)
T ss_dssp HHHHHHHHTCCCCEEEEE
T ss_pred HHHHHHHcCccccEEEEE
Confidence 455566666 5888864
No 187
>1g94_A Alpha-amylase; beta-alpha-8-barrel, 3 domain structure, hydrolase; HET: DAF GLC; 1.74A {Pseudoalteromonas haloplanktis} SCOP: b.71.1.1 c.1.8.1 PDB: 1g9h_A* 1l0p_A 1aqm_A* 1aqh_A* 1b0i_A 1jd7_A 1jd9_A 1kxh_A*
Probab=26.00 E-value=1.6e+02 Score=28.24 Aligned_cols=63 Identities=5% Similarity=-0.135 Sum_probs=44.8
Q ss_pred ceEEecCCCHHHHHHH-HHHHHHcCCcEEeeccCcCCCCCC----------Cccc-ccCCHHHHHHHHHHHHHhh
Q 019890 267 SIMLGCGETPDQVVST-MEKVRAAGVDVMTFGQYMRPSKRH----------MPVS-EYITPEAFERYRALGMEMV 329 (334)
Q Consensus 267 giMVGlGETdEE~~et-l~~Lre~gvd~vtigqYlrP~~~h----------~~v~-~yv~P~~f~~~~~~a~~~~ 329 (334)
.||=+|+-+...+.+- ++.|+++||+.|-+.+.......+ ..|. +|=++++|+.+-+.|.+.|
T Consensus 4 ~~~q~F~w~~~gi~~~lldyL~~LGv~~I~l~Pi~~~~~~~~~~~gY~~~~y~idp~~Gt~~dfk~Lv~~aH~~G 78 (448)
T 1g94_A 4 TFVHLFEWNWQDVAQECEQYLGPKGYAAVQVSPPNEHITGSQWWTRYQPVSYELQSRGGNRAQFIDMVNRCSAAG 78 (448)
T ss_dssp CEEEETTCCHHHHHHHHHHTHHHHTCCEEEECCCSCBBCSSSGGGGGSBSCSCSCBTTBCHHHHHHHHHHHHHTT
T ss_pred EEEEEecCcHHHHHHHHHHHHHHcCCCEEEECCccccCCCCCCcccccccccccCCCCCCHHHHHHHHHHHHHCC
Confidence 4566778889999976 599999999999988654221111 2332 4457888998888877653
No 188
>1u7z_A Coenzyme A biosynthesis bifunctional protein coabc; ligase; HET: PMT; 2.30A {Escherichia coli} SCOP: c.72.3.1 PDB: 1u7w_A* 1u7u_A* 1u80_A*
Probab=25.96 E-value=35 Score=30.73 Aligned_cols=48 Identities=15% Similarity=0.170 Sum_probs=36.4
Q ss_pred HHHHHHHHh-CCCcceEeeceEEec-CCCHHHHHHHHHHHHHcCCcEEeeccCcCC
Q 019890 249 DVLMMAKDY-VPAGTLTKTSIMLGC-GETPDQVVSTMEKVRAAGVDVMTFGQYMRP 302 (334)
Q Consensus 249 ~vL~~ak~~-~p~Gl~tkTgiMVGl-GETdEE~~etl~~Lre~gvd~vtigqYlrP 302 (334)
++|..+++. .|+ . ++||| .||++-+...-+.|++-++|.+-.+...++
T Consensus 129 dIL~~l~~~~~~~-~-----~~VGFaaEt~~l~e~A~~kL~~k~~d~ivaN~~~~~ 178 (226)
T 1u7z_A 129 DIVAGVAALKDHR-P-----YVVGFAAETNNVEEYARQKRIRKNLDLICANDVSQP 178 (226)
T ss_dssp CHHHHHHHCSSSC-C-----EEEEEEEESSSHHHHHHHHHHHHTCSEEEEEECSST
T ss_pred HHHHHHHhhhcCC-c-----EEEEcchhhchHHHHHHHHHHhcCCCEEEEeecccc
Confidence 456666553 233 2 69999 999888888888999999999998876643
No 189
>3kws_A Putative sugar isomerase; structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 1.68A {Parabacteroides distasonis atcc 8503}
Probab=25.83 E-value=1.9e+02 Score=25.19 Aligned_cols=23 Identities=22% Similarity=0.271 Sum_probs=18.1
Q ss_pred hhHHHHHHHHHHCCCcEEEEeee
Q 019890 160 DEPTNVAEAIASWGLDYVVITSV 182 (334)
Q Consensus 160 ~Ep~~~A~av~~~GlkeVVLTSv 182 (334)
+...+.++.++.+|.++|++.++
T Consensus 104 ~~~~~~i~~a~~lGa~~v~~~~g 126 (287)
T 3kws_A 104 DTMKEIIAAAGELGSTGVIIVPA 126 (287)
T ss_dssp HHHHHHHHHHHHTTCSEEEECSC
T ss_pred HHHHHHHHHHHHcCCCEEEEecC
Confidence 45667777888899999998654
No 190
>3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum}
Probab=25.76 E-value=3e+02 Score=25.14 Aligned_cols=136 Identities=15% Similarity=0.185 Sum_probs=83.4
Q ss_pred CCCCchhHHHHHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhCCCCceeeeeccccccccccchhhHHHHH
Q 019890 155 PPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVAKSGLNVFAHNIETVEELQ 234 (334)
Q Consensus 155 ~~ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~P~i~vE~Ll~~ag~dv~~HnlETv~~l~ 234 (334)
..+|.+...+.++.+.+.|++-+++.|-+.. .+....+.-.++++.+.+...+ ..-++.+-
T Consensus 32 g~iD~~~l~~lv~~li~~Gv~gl~v~GttGE-~~~Ls~~Er~~v~~~~~~~~~g----------rvpviaGv-------- 92 (304)
T 3cpr_A 32 GDIDIAAGREVAAYLVDKGLDSLVLAGTTGE-SPTTTAAEKLELLKAVREEVGD----------RAKLIAGV-------- 92 (304)
T ss_dssp SCBCHHHHHHHHHHHHHTTCCEEEESSTTTT-TTTSCHHHHHHHHHHHHHHHTT----------TSEEEEEC--------
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEECccccC-hhhCCHHHHHHHHHHHHHHhCC----------CCcEEecC--------
Confidence 4689999999999999999999988775431 2222223344566655543211 12233322
Q ss_pred HhhcCCCCCHHHHHHHHHHHHHhCCCcceEeeceEEecCCCHHHHHHHHHHHHHcCCcEEeeccCcCCCCCCCcccccCC
Q 019890 235 SAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMPVSEYIT 314 (334)
Q Consensus 235 ~~Vr~r~~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGlGETdEE~~etl~~Lre~gvd~vtigqYlrP~~~h~~v~~yv~ 314 (334)
-..+.++.++..+++++.--+|+.+-+-.- +.-+++++.+.++.+.+.- + ++|.-|--|.... --++
T Consensus 93 -----g~~st~~ai~la~~A~~~Gadavlv~~P~y--~~~~~~~l~~~f~~ia~a~-~-lPiilYn~P~~tg----~~l~ 159 (304)
T 3cpr_A 93 -----GTNNTRTSVELAEAAASAGADGLLVVTPYY--SKPSQEGLLAHFGAIAAAT-E-VPICLYDIPGRSG----IPIE 159 (304)
T ss_dssp -----CCSCHHHHHHHHHHHHHTTCSEEEEECCCS--SCCCHHHHHHHHHHHHHHC-C-SCEEEEECHHHHS----SCCC
T ss_pred -----CCCCHHHHHHHHHHHHhcCCCEEEECCCCC--CCCCHHHHHHHHHHHHHhc-C-CCEEEEeCccccC----cCCC
Confidence 235678888999999887444443333322 2458999999999988752 2 5666676665321 2345
Q ss_pred HHHHHHHH
Q 019890 315 PEAFERYR 322 (334)
Q Consensus 315 P~~f~~~~ 322 (334)
|+.+.++.
T Consensus 160 ~~~~~~La 167 (304)
T 3cpr_A 160 SDTMRRLS 167 (304)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHH
Confidence 65555543
No 191
>2ze3_A DFA0005; organic waste LEFT-OVER decomposition, alkaliphilic, ICL/PEPM superfamily, alpha-ketoglutarate LIG isomerase; HET: AKG; 1.65A {Deinococcus ficus}
Probab=25.70 E-value=1.2e+02 Score=27.95 Aligned_cols=73 Identities=18% Similarity=0.143 Sum_probs=55.8
Q ss_pred CCCHHHHHHHHHHHHHhCCCcceEeeceEEecCCCHHHHHHHHHHHHHcCCcEEeeccCcCCCCCCCcccccCCHHHHHH
Q 019890 241 RANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMPVSEYITPEAFER 320 (334)
Q Consensus 241 ~~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGlGETdEE~~etl~~Lre~gvd~vtigqYlrP~~~h~~v~~yv~P~~f~~ 320 (334)
..++++.+..++.+.+..+ +.+-.|+=.|||.+.+++.++.+.+.+.|+.-|+|=--..| +-...++.+++..
T Consensus 58 ~vt~~em~~~~~~I~~~~~--~pviaD~d~Gyg~~~~~~~~~v~~l~~aGaagv~iED~~~~-----~~k~l~~~~e~~~ 130 (275)
T 2ze3_A 58 TLTRDEMGREVEAIVRAVA--IPVNADIEAGYGHAPEDVRRTVEHFAALGVAGVNLEDATGL-----TPTELYDLDSQLR 130 (275)
T ss_dssp SSCHHHHHHHHHHHHHHCS--SCEEEECTTCSSSSHHHHHHHHHHHHHTTCSEEEEECBCSS-----SSSCBCCHHHHHH
T ss_pred CCCHHHHHHHHHHHHhhcC--CCEEeecCCCCCCCHHHHHHHHHHHHHcCCcEEEECCCcCC-----CCCccCCHHHHHH
Confidence 4678888888888887654 46788888899999999999999999999999998422211 3345677776543
No 192
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=25.59 E-value=3.1e+02 Score=24.51 Aligned_cols=72 Identities=8% Similarity=0.049 Sum_probs=38.4
Q ss_pred CHHHHHHHHHHHHHhCCCcceEeeceEEecCCCHHHHHHHHHHHHHcCCcEEeeccCcCCCCCCCcccccCCHHHHHHHH
Q 019890 243 NFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMPVSEYITPEAFERYR 322 (334)
Q Consensus 243 tye~sL~vL~~ak~~~p~Gl~tkTgiMVGlGETdEE~~etl~~Lre~gvd~vtigqYlrP~~~h~~v~~yv~P~~f~~~~ 322 (334)
+.++-.+.++.+.....+|+++ ++...++ +.++.|.+.++-.|.++..... +...+|..+.+..-+
T Consensus 111 ~~~~~~~~~~~l~~~~vdGiI~-----~~~~~~~----~~~~~l~~~~iPvV~i~~~~~~-----~~~~~V~~D~~~~~~ 176 (355)
T 3e3m_A 111 SPEREEQLVETMLRRRPEAMVL-----SYDGHTE----QTIRLLQRASIPIVEIWEKPAH-----PIGHTVGFSNERAAY 176 (355)
T ss_dssp CHHHHHHHHHHHHHTCCSEEEE-----ECSCCCH----HHHHHHHHCCSCEEEESSCCSS-----CSSEEEECCHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCCEEEE-----eCCCCCH----HHHHHHHhCCCCEEEECCccCC-----CCCCEEEeChHHHHH
Confidence 3444455566665544455432 3334443 3466788889999988643211 112355555555555
Q ss_pred HHHHHh
Q 019890 323 ALGMEM 328 (334)
Q Consensus 323 ~~a~~~ 328 (334)
..++.|
T Consensus 177 ~a~~~L 182 (355)
T 3e3m_A 177 DMTNAL 182 (355)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555544
No 193
>2yxo_A Histidinol phosphatase; metal-dependent, hydrolase; 1.60A {Thermus thermophilus} PDB: 2yz5_A 2z4g_A
Probab=25.57 E-value=1.7e+02 Score=25.37 Aligned_cols=23 Identities=30% Similarity=0.294 Sum_probs=17.6
Q ss_pred HHHHHHHHHHCCCcEEEEeeecC
Q 019890 162 PTNVAEAIASWGLDYVVITSVDR 184 (334)
Q Consensus 162 p~~~A~av~~~GlkeVVLTSv~r 184 (334)
|++.++++++.|++.|++|--+.
T Consensus 18 ~ee~v~~A~~~Gl~~iaiTDH~~ 40 (267)
T 2yxo_A 18 PEAYLEEARAKGLKGVVFTDHSP 40 (267)
T ss_dssp HHHHHHHHHHTTCSEEEEEEECC
T ss_pred HHHHHHHHHHcCCCEEEEcCCCC
Confidence 34556666899999999998653
No 194
>3ewb_X 2-isopropylmalate synthase; LEUA, structural genomics, unknown function, amino-acid biosynthesis; 2.10A {Listeria monocytogenes str}
Probab=25.42 E-value=1.4e+02 Score=27.36 Aligned_cols=49 Identities=12% Similarity=0.122 Sum_probs=37.4
Q ss_pred CCCchhHHHHHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhCCC
Q 019890 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPN 208 (334)
Q Consensus 156 ~ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~P~ 208 (334)
..+++.+.++++++.+.|...|.|--- ..-.-...+.++|+.|++..|+
T Consensus 146 ~~~~~~~~~~~~~~~~~G~~~i~l~DT----~G~~~P~~v~~lv~~l~~~~~~ 194 (293)
T 3ewb_X 146 RSDRAFLIEAVQTAIDAGATVINIPDT----VGYTNPTEFGQLFQDLRREIKQ 194 (293)
T ss_dssp GSCHHHHHHHHHHHHHTTCCEEEEECS----SSCCCHHHHHHHHHHHHHHCTT
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEecCC----CCCCCHHHHHHHHHHHHHhcCC
Confidence 367889999999999999999888321 1112356788999999998875
No 195
>2r91_A 2-keto-3-deoxy-(6-phospho-)gluconate aldolase; TIM barrel, thermophilic, lyase; 2.00A {Thermoproteus tenax} PDB: 2r94_A
Probab=25.17 E-value=3.7e+02 Score=24.20 Aligned_cols=118 Identities=13% Similarity=0.078 Sum_probs=75.9
Q ss_pred CCCCchhHHHHHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhCCCCceeeeeccccccccccchhhHHHHH
Q 019890 155 PPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVAKSGLNVFAHNIETVEELQ 234 (334)
Q Consensus 155 ~~ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~P~i~vE~Ll~~ag~dv~~HnlETv~~l~ 234 (334)
..+|.+...+.++.+.+.|++-+++.|-+. ..+....+.-.++++.+.+... | ++.+-
T Consensus 14 g~iD~~~l~~lv~~li~~Gv~gl~v~GttG-E~~~Ls~~Er~~v~~~~~~~~~-----------g--vi~Gv-------- 71 (286)
T 2r91_A 14 GRLDPELFANHVKNITSKGVDVVFVAGTTG-LGPALSLQEKMELTDAATSAAR-----------R--VIVQV-------- 71 (286)
T ss_dssp TEECHHHHHHHHHHHHHTTCCEEEETSTTT-TGGGSCHHHHHHHHHHHHHHCS-----------S--EEEEC--------
T ss_pred CccCHHHHHHHHHHHHHCCCCEEEECcccc-ChhhCCHHHHHHHHHHHHHHhC-----------C--EEEee--------
Confidence 358889999999999999999998877543 1222222344567776666532 2 33322
Q ss_pred HhhcCCCCCHHHHHHHHHHHHHhCCCcceEeeceEEecC-CCHHHHHHHHHHHHHcCCcEEeeccCcCCC
Q 019890 235 SAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCG-ETPDQVVSTMEKVRAAGVDVMTFGQYMRPS 303 (334)
Q Consensus 235 ~~Vr~r~~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGlG-ETdEE~~etl~~Lre~gvd~vtigqYlrP~ 303 (334)
-..+.++.++..+++++.--+|+.+-+-... . -|++++.+.++.+.+.- + ++|.-|--|.
T Consensus 72 -----g~~~t~~ai~la~~A~~~Gadavlv~~P~y~--~~~s~~~l~~~f~~va~a~-~-lPiilYn~P~ 132 (286)
T 2r91_A 72 -----ASLNADEAIALAKYAESRGAEAVASLPPYYF--PRLSERQIAKYFRDLCSAV-S-IPVFLYNYPA 132 (286)
T ss_dssp -----CCSSHHHHHHHHHHHHHTTCSEEEECCSCSS--TTCCHHHHHHHHHHHHHHC-S-SCEEEEECHH
T ss_pred -----CCCCHHHHHHHHHHHHhcCCCEEEEcCCcCC--CCCCHHHHHHHHHHHHHhc-C-CCEEEEeChh
Confidence 2346788888889998864343333332221 3 58999999999988752 2 4666666664
No 196
>2ekc_A AQ_1548, tryptophan synthase alpha chain; structural genomics, lyase, NPPSFA, national project on PROT structural and functional analyses; 2.00A {Aquifex aeolicus}
Probab=25.12 E-value=3.6e+02 Score=23.94 Aligned_cols=54 Identities=11% Similarity=0.115 Sum_probs=32.8
Q ss_pred hcCCCCCHHHHHHHHHHHHHhCCCcceEeeceEEecCCCHH----HHHHHHHHHHHcCCcEEeec
Q 019890 237 VRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPD----QVVSTMEKVRAAGVDVMTFG 297 (334)
Q Consensus 237 Vr~r~~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGlGETdE----E~~etl~~Lre~gvd~vtig 297 (334)
+. .+-+.++.++.++.+|+..|+ +.+ .+ ||-..- -+.+.++.+.+.|+|-+.+.
T Consensus 72 l~-~G~~~~~~~~~v~~ir~~~~~-~Pi--~~---m~y~n~v~~~g~~~f~~~~~~aG~dgvii~ 129 (262)
T 2ekc_A 72 LK-NGIRFEDVLELSETLRKEFPD-IPF--LL---MTYYNPIFRIGLEKFCRLSREKGIDGFIVP 129 (262)
T ss_dssp HH-TTCCHHHHHHHHHHHHHHCTT-SCE--EE---ECCHHHHHHHCHHHHHHHHHHTTCCEEECT
T ss_pred HH-cCCCHHHHHHHHHHHHhhcCC-CCE--EE---EecCcHHHHhhHHHHHHHHHHcCCCEEEEC
Confidence 44 467788888888888887544 332 12 232221 01455677778888877774
No 197
>3ks9_A Mglur1, metabotropic glutamate receptor 1; glutamate receptors, dimerization, glutamic acid BIN structural genomics, structural genomics consortium; HET: Z99 NAG; 1.90A {Homo sapiens} SCOP: c.93.1.1 PDB: 1ewk_A* 1ewt_A* 1ewv_A 1isr_A* 1iss_A* 3lmk_A*
Probab=24.64 E-value=4.7e+02 Score=25.07 Aligned_cols=45 Identities=11% Similarity=0.248 Sum_probs=29.9
Q ss_pred CCCchhHHHHHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHh
Q 019890 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKE 204 (334)
Q Consensus 156 ~ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~ 204 (334)
+.|..+....++.++..|.+.|.|...| .++|...+..+.+++++
T Consensus 179 psd~~~~~ai~~ll~~fgw~~V~li~~d----d~~G~~~~~~~~~~~~~ 223 (496)
T 3ks9_A 179 PSDTLQARAMLDIVKRYNWTYVSAVHTE----GNYGESGMDAFKELAAQ 223 (496)
T ss_dssp CCTHHHHHHHHHHHHHTTCCEEEEEEES----SHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHcCCcEEEEEEec----cHHHHHHHHHHHHHHHH
Confidence 3456677888888889999999887654 24565444444444544
No 198
>2nuw_A 2-keto-3-deoxygluconate/2-keto-3-deoxy-6-phospho aldolase; TIM barrel, lyase; 1.80A {Sulfolobus acidocaldarius dsm 639} PDB: 2nux_A 2nuy_A
Probab=24.58 E-value=3.6e+02 Score=24.36 Aligned_cols=118 Identities=9% Similarity=0.120 Sum_probs=75.4
Q ss_pred CCCCchhHHHHHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhCCCCceeeeeccccccccccchhhHHHHH
Q 019890 155 PPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVAKSGLNVFAHNIETVEELQ 234 (334)
Q Consensus 155 ~~ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~P~i~vE~Ll~~ag~dv~~HnlETv~~l~ 234 (334)
..+|.+...+.++.+.+.|++-+++.|-+. .......+.-.++++.+.+... | ++.+-
T Consensus 15 g~iD~~~l~~lv~~li~~Gv~gl~v~GtTG-E~~~Ls~eEr~~v~~~~~~~~~-----------g--ViaGv-------- 72 (288)
T 2nuw_A 15 GKVNVDALKTHAKNLLEKGIDAIFVNGTTG-LGPALSKDEKRQNLNALYDVTH-----------K--LIFQV-------- 72 (288)
T ss_dssp SCBCHHHHHHHHHHHHHTTCCEEEETSTTT-TGGGSCHHHHHHHHHHHTTTCS-----------C--EEEEC--------
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEECcccc-ChhhCCHHHHHHHHHHHHHHhC-----------C--eEEee--------
Confidence 468999999999999999999998877542 1122222334566666655422 2 44332
Q ss_pred HhhcCCCCCHHHHHHHHHHHHHhCCCcceEeeceEEecC-CCHHHHHHHHHHHHHcCCcEEeeccCcCCC
Q 019890 235 SAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCG-ETPDQVVSTMEKVRAAGVDVMTFGQYMRPS 303 (334)
Q Consensus 235 ~~Vr~r~~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGlG-ETdEE~~etl~~Lre~gvd~vtigqYlrP~ 303 (334)
-..+.++.++..+.+++.--+|+.+-+-... . -|++++.+.++.+.+.- + ++|.-|--|.
T Consensus 73 -----g~~~t~~ai~la~~A~~~Gadavlv~~P~y~--~~~s~~~l~~~f~~va~a~-~-lPiilYn~P~ 133 (288)
T 2nuw_A 73 -----GSLNLNDVMELVKFSNEMDILGVSSHSPYYF--PRLPEKFLAKYYEEIARIS-S-HSLYIYNYPA 133 (288)
T ss_dssp -----CCSCHHHHHHHHHHHHTSCCSEEEECCCCSS--CSCCHHHHHHHHHHHHHHC-C-SCEEEEECHH
T ss_pred -----CCCCHHHHHHHHHHHHhcCCCEEEEcCCcCC--CCCCHHHHHHHHHHHHHhc-C-CCEEEEECch
Confidence 2356788888888888863343333332221 3 59999999999988752 2 5666676664
No 199
>3pzs_A PM kinase, pyridoxamine kinase; structural genomics, center for structural genomics of infec diseases, csgid, transferase; HET: MSE; 1.89A {Yersinia pestis} SCOP: c.72.1.5 PDB: 1td2_A* 1vi9_A*
Probab=24.50 E-value=1.8e+02 Score=26.01 Aligned_cols=120 Identities=17% Similarity=0.165 Sum_probs=0.0
Q ss_pred CCchhHHHHHHHHHHC----CCcEEEEeeecCCCCCCch-HHHHHHHHHHHHhhCCCCceeee-eccccccccccchhhH
Q 019890 157 PDPDEPTNVAEAIASW----GLDYVVITSVDRDDLADQG-SGHFAQTVRKLKELKPNMLIEAL-VAKSGLNVFAHNIETV 230 (334)
Q Consensus 157 ld~~Ep~~~A~av~~~----GlkeVVLTSv~rdDl~d~G-a~~fa~lIr~Ik~~~P~i~vE~L-l~~ag~dv~~HnlETv 230 (334)
++.+++.+..+.+.++ .++. |++|- +++.. .+.++++++.+++..|++.+=+- ++...-..+-..-+..
T Consensus 57 ~~~~~~~~~~~~~~~~~~l~~~d~-v~~G~----l~~~~~~~~v~~~l~~~~~~~~~~~vv~DPVm~~~~~~~~~~~~~~ 131 (289)
T 3pzs_A 57 MPASHLTDIVQGIADIDRLKDCDA-VLSGY----IGSPEQGSHILAAVAQVKQANPDAWYFCDPVMGHPEKGCIVAPGVA 131 (289)
T ss_dssp CCHHHHHHHHHHHHHTTCGGGCCE-EEECC----CSSHHHHHHHHHHHHHHHHHCTTCEEEECCCCEETTTEECSCHHHH
T ss_pred CCHHHHHHHHHHHHhcCCccCCCE-EEECC----CCCHHHHHHHHHHHHHHHhhCCCCeEEEcCccccCCCCcccCHHHH
Q ss_pred HHHHHhhcCCCCCHHHHHHHHHHHHHhCCCcceEeeceEEec-CCCHHHHHHHHHHHHHcCCcEEee
Q 019890 231 EELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC-GETPDQVVSTMEKVRAAGVDVMTF 296 (334)
Q Consensus 231 ~~l~~~Vr~r~~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGl-GETdEE~~etl~~Lre~gvd~vti 296 (334)
+.+...+- +..+. +.|+ ..-...+.|. .++.+++.+.++.|.+.|+..|-+
T Consensus 132 ~~l~~~ll-~~~di------------itpN--~~E~~~L~g~~~~~~~~~~~aa~~l~~~g~~~Vvv 183 (289)
T 3pzs_A 132 EFFCNEAL-PASDM------------IAPN--LLELEQLSGERVENVEQAVQVARSLCARGPKVVLV 183 (289)
T ss_dssp HHHHHTHH-HHCSE------------ECCC--HHHHHHHHTSCCCSHHHHHHHHHHHHTTSCSEEEE
T ss_pred HHHHHHhh-ccCCE------------EeCC--HHHHHHHhCCCCCCHHHHHHHHHHHHHHCCCEEEE
No 200
>1z41_A YQJM, probable NADH-dependent flavin oxidoreductase YQJ; FMN, beta-alpha-barrel; HET: FMN; 1.30A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1z42_A* 1z44_A* 1z48_A*
Probab=24.46 E-value=1.3e+02 Score=28.02 Aligned_cols=51 Identities=12% Similarity=0.144 Sum_probs=34.1
Q ss_pred HHHHHHHHHhCCCcceEeece--EEecCCCHHHHHHHHHHHHHcCCcEEeecc
Q 019890 248 LDVLMMAKDYVPAGTLTKTSI--MLGCGETPDQVVSTMEKVRAAGVDVMTFGQ 298 (334)
Q Consensus 248 L~vL~~ak~~~p~Gl~tkTgi--MVGlGETdEE~~etl~~Lre~gvd~vtigq 298 (334)
+++++.+++....-+.+|-+. .+.-|-+.+|..+..+.|.+.|+|.+++..
T Consensus 198 ~eiv~avr~~v~~pv~vris~~~~~~~g~~~~~~~~~a~~l~~~Gvd~i~v~~ 250 (338)
T 1z41_A 198 REIIDEVKQVWDGPLFVRVSASDYTDKGLDIADHIGFAKWMKEQGVDLIDCSS 250 (338)
T ss_dssp HHHHHHHHHHCCSCEEEEEECCCCSTTSCCHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred HHHHHHHHHHcCCcEEEEecCcccCCCCCCHHHHHHHHHHHHHcCCCEEEEec
Confidence 677778877651102222111 011167899999999999999999999864
No 201
>1o66_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; structural genomics; HET: MSE; 1.75A {Neisseria meningitidis serogroup B} SCOP: c.1.12.8 PDB: 1o68_A*
Probab=24.36 E-value=3.2e+02 Score=25.28 Aligned_cols=125 Identities=9% Similarity=0.061 Sum_probs=0.0
Q ss_pred HHHHHHCCCcEEEEee-----ecCCCCCCchHHHHHHHHHHHHhhCCCCceeeeeccccccccccchh-hHHHHHHhhcC
Q 019890 166 AEAIASWGLDYVVITS-----VDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVAKSGLNVFAHNIE-TVEELQSAVRD 239 (334)
Q Consensus 166 A~av~~~GlkeVVLTS-----v~rdDl~d~Ga~~fa~lIr~Ik~~~P~i~vE~Ll~~ag~dv~~HnlE-Tv~~l~~~Vr~ 239 (334)
|+.+.+.|++ ++|+| +-.+ ++|.+.-.+.+++...+...-....-+++.|-+---|.-|.| +++...+-|+
T Consensus 30 A~l~e~aG~d-~ilvGdSl~~~~lG-~~dt~~vTldemi~h~~aV~r~~~~~~vvaD~pfgsy~~s~~~a~~na~rl~k- 106 (275)
T 1o66_A 30 AALMDDAGVE-MLLVGDSLGMAVQG-RKSTLPVSLRDMCYHTECVARGAKNAMIVSDLPFGAYQQSKEQAFAAAAELMA- 106 (275)
T ss_dssp HHHHHHTTCC-EEEECTTHHHHTTC-CSSSTTCCHHHHHHHHHHHHHHCSSSEEEEECCTTSSSSCHHHHHHHHHHHHH-
T ss_pred HHHHHHcCCC-EEEECHHHHHHHcC-CCCCCCCCHHHHHHHHHHHHhhCCCCeEEEECCCCCccCCHHHHHHHHHHHHH-
Q ss_pred CCC------CHHHHHHHHHHHHHhCCCcceEe--------------eceEEecCCCHHHHHHHHHHHHHcCCcEEee
Q 019890 240 HRA------NFKQSLDVLMMAKDYVPAGTLTK--------------TSIMLGCGETPDQVVSTMEKVRAAGVDVMTF 296 (334)
Q Consensus 240 r~~------tye~sL~vL~~ak~~~p~Gl~tk--------------TgiMVGlGETdEE~~etl~~Lre~gvd~vti 296 (334)
.++ +-++..+.++.+.+. |+.+. .-.+.|=.+.-++.++-.+.+.++|.+.+.+
T Consensus 107 aGa~aVklEdg~e~~~~I~al~~a---gIpV~gHiGLtPQs~~~~ggf~v~grt~~a~~~i~rA~a~~eAGA~~ivl 180 (275)
T 1o66_A 107 AGAHMVKLEGGVWMAETTEFLQMR---GIPVCAHIGLTPQSVFAFGGYKVQGRGGKAQALLNDAKAHDDAGAAVVLM 180 (275)
T ss_dssp TTCSEEEEECSGGGHHHHHHHHHT---TCCEEEEEESCGGGTTC-----------CHHHHHHHHHHHHHTTCSEEEE
T ss_pred cCCcEEEECCcHHHHHHHHHHHHc---CCCeEeeeccCceeecccCCeEEEeChHHHHHHHHHHHHHHHcCCcEEEE
No 202
>2wvv_A Alpha-L-fucosidase; alpha-L-fucose, hydrolase, glycoside hydrolase family 29; 1.73A {Bacteroides thetaiotaomicron} PDB: 2xii_A* 2xib_A* 2wvv_B 2wvt_A* 2wvu_A* 2wvs_A*
Probab=24.34 E-value=44 Score=32.98 Aligned_cols=56 Identities=14% Similarity=0.221 Sum_probs=36.1
Q ss_pred CCCCCchhHHHHHHHHHHCCCcEEEEeeecCCCC-------CCc-------hHHHHHHHHHHHHhhCCCCceeee
Q 019890 154 PPPPDPDEPTNVAEAIASWGLDYVVITSVDRDDL-------ADQ-------GSGHFAQTVRKLKELKPNMLIEAL 214 (334)
Q Consensus 154 p~~ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl-------~d~-------Ga~~fa~lIr~Ik~~~P~i~vE~L 214 (334)
|...|+++-. +.+++.|.||||||+-+.|-+ .++ +.+-+.++++++++. ++.+-+.
T Consensus 75 p~~fDp~~Wa---~~~k~AGakyvvlTaKHHDGF~lwpSk~t~~n~~~~~~krDlv~el~~A~rk~--Glk~GlY 144 (450)
T 2wvv_A 75 PTKFDAKKWA---KMAKEMGTKYVKITTKHHEGFCLWPSKYTKYTVANTPYKRDILGELVKAYNDE--GIDVHFY 144 (450)
T ss_dssp CTTCCHHHHH---HHHHHHTCSEEEEEEECTTCCBSSCCTTCSCBGGGSTTCSCHHHHHHHHHHHT--TCEEEEE
T ss_pred cccCCHHHHH---HHHHHcCCcEEEEEEeecCCccccCCCCCCCccccCCCCCChHHHHHHHHHHc--CCeEEEE
Confidence 3345665554 555789999999999876421 111 124567888888775 6666555
No 203
>3ovp_A Ribulose-phosphate 3-epimerase; iron binding, isomerase; HET: XPE; 1.70A {Homo sapiens} SCOP: c.1.2.0 PDB: 3ovq_A* 3ovr_A* 3qc3_A
Probab=24.28 E-value=32 Score=30.70 Aligned_cols=68 Identities=18% Similarity=0.287 Sum_probs=41.8
Q ss_pred CCCchhHHHHHHHHHHCCCcEEEEeeecC---CCCCCchHHHHHHHHHHHHhhC-CCC--ceeee----------ecccc
Q 019890 156 PPDPDEPTNVAEAIASWGLDYVVITSVDR---DDLADQGSGHFAQTVRKLKELK-PNM--LIEAL----------VAKSG 219 (334)
Q Consensus 156 ~ld~~Ep~~~A~av~~~GlkeVVLTSv~r---dDl~d~Ga~~fa~lIr~Ik~~~-P~i--~vE~L----------l~~ag 219 (334)
..|...+.+..+.+.+.|.+.+.+==.|. ..+. .| .++|++|++.. |+. .+++. +.++|
T Consensus 13 ~~D~~~l~~~i~~l~~~g~d~~h~DVmDg~Fvpn~~-~G----~~~v~~ir~~~~~~~~~dvhLmv~~p~~~i~~~~~aG 87 (228)
T 3ovp_A 13 NSDLANLGAECLRMLDSGADYLHLDVMDGHFVPNIT-FG----HPVVESLRKQLGQDPFFDMHMMVSKPEQWVKPMAVAG 87 (228)
T ss_dssp TSCGGGHHHHHHHHHHTTCSCEEEEEEBSSSSSCBC-BC----HHHHHHHHHHHCSSSCEEEEEECSCGGGGHHHHHHHT
T ss_pred eCCchhHHHHHHHHHHcCCCEEEEEecCCCcCcccc-cC----HHHHHHHHHhhCCCCcEEEEEEeCCHHHHHHHHHHcC
Confidence 46888899999999999998665522221 1122 34 35778888774 553 33333 56677
Q ss_pred ccccccchh
Q 019890 220 LNVFAHNIE 228 (334)
Q Consensus 220 ~dv~~HnlE 228 (334)
.|.+.-+.|
T Consensus 88 ad~itvH~E 96 (228)
T 3ovp_A 88 ANQYTFHLE 96 (228)
T ss_dssp CSEEEEEGG
T ss_pred CCEEEEccC
Confidence 776655544
No 204
>4ef8_A Dihydroorotate dehydrogenase; phenyl isothiocyanate, PYRD, oxidoreductase, oxidoreductase-oxidor inhibitor complex; HET: FMN; 1.56A {Leishmania major} PDB: 3gye_A* 3gz3_A* 4ef9_A* 3tro_A* 3tjx_A*
Probab=24.24 E-value=1.9e+02 Score=27.46 Aligned_cols=128 Identities=12% Similarity=0.097 Sum_probs=0.0
Q ss_pred HHHHHHHHHCCCcEEEEee---------------------ecCCCCCCchHHHHHHHHHHHHhhCCC-Cceeee------
Q 019890 163 TNVAEAIASWGLDYVVITS---------------------VDRDDLADQGSGHFAQTVRKLKELKPN-MLIEAL------ 214 (334)
Q Consensus 163 ~~~A~av~~~GlkeVVLTS---------------------v~rdDl~d~Ga~~fa~lIr~Ik~~~P~-i~vE~L------ 214 (334)
.+..+.+...|+..|++=+ .|+--+...|.+.|.+-++.+++.... +.+.+.
T Consensus 61 ~e~~~~l~~~G~G~v~~ktvt~~pq~GNp~PR~~~~~~~~iN~~G~~n~G~~~~~~~l~~~~~~~~~pvivsI~G~~~~d 140 (354)
T 4ef8_A 61 TEELVAMTESASGSLVSKSCTPALREGNPTPRYQALPLGSINSMGLPNNGFDFYLAYAAEQHDYGKKPLFLSMSGLSMRE 140 (354)
T ss_dssp HHHHHHHHHSSCSCEEEEEECSSCBCCSCSCCEEEETTEEEECCCCCBCCHHHHHHHHHHTCCTTTCCEEEEECCSSHHH
T ss_pred HHHHHHHHHcCCCeEEeCcccCcccCCCCCCcEEecchhhhccCCCCCcCHHHHHHHHHHHhhcCCCcEEEEeccCCHHH
Q ss_pred -------ec---cccccccccchhhHHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCcceEeeceEEecCCCHHHHHHHHH
Q 019890 215 -------VA---KSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTME 284 (334)
Q Consensus 215 -------l~---~ag~dv~~HnlETv~~l~~~Vr~r~~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGlGETdEE~~etl~ 284 (334)
+. +.|.|.+.-|+ .+|..-.... -..+.+...++++.+++....=+.+|... +-+++++.+..+
T Consensus 141 ~~~~a~~l~~~~~~g~d~ielNi-sCPn~~gg~~-l~~~~e~~~~il~av~~~~~~PV~vKi~p----~~d~~~~~~~a~ 214 (354)
T 4ef8_A 141 NVEMCKRLAAVATEKGVILELNL-SCPNVPGKPQ-VAYDFDAMRQCLTAVSEVYPHSFGVKMPP----YFDFAHFDAAAE 214 (354)
T ss_dssp HHHHHHHHHHHHHHHCCEEEEEC-SSCCSTTSCC-GGGSHHHHHHHHHHHHHHCCSCEEEEECC----CCSHHHHHHHHH
T ss_pred HHHHHHHHhhhhhcCCCEEEEeC-CCCCCCCchh-hccCHHHHHHHHHHHHHhhCCCeEEEecC----CCCHHHHHHHHH
Q ss_pred HHHHcC-CcEEee
Q 019890 285 KVRAAG-VDVMTF 296 (334)
Q Consensus 285 ~Lre~g-vd~vti 296 (334)
.+.+.| +|.|++
T Consensus 215 ~~~~~Gg~d~I~~ 227 (354)
T 4ef8_A 215 ILNEFPKVQFITC 227 (354)
T ss_dssp HHHTCTTEEEEEE
T ss_pred HHHhCCCccEEEE
No 205
>4djd_C C/Fe-SP, corrinoid/iron-sulfur protein large subunit; TIM barrel, rossmann fold, B12-dependent methyltransferase; HET: B12; 2.38A {Moorella thermoacetica} PDB: 4dje_C* 4djf_C*
Probab=24.06 E-value=1.7e+02 Score=29.07 Aligned_cols=138 Identities=19% Similarity=0.247 Sum_probs=67.5
Q ss_pred CCchhHHHHHHHHHHC---------CCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhCCCCceeee-----eccccccc
Q 019890 157 PDPDEPTNVAEAIASW---------GLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEAL-----VAKSGLNV 222 (334)
Q Consensus 157 ld~~Ep~~~A~av~~~---------GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~P~i~vE~L-----l~~ag~dv 222 (334)
++.+++...++.+.++ |++-|.|... ....+.++.+|++|.+.. ++.+-+. +.+++++.
T Consensus 102 ~~e~~~~~~~~~~~~~~~~rvg~~~~~D~ial~~~------s~dpe~~~~vVk~V~e~~-dvPL~IDS~dpevleaALea 174 (446)
T 4djd_C 102 LSSEELKAKVEAINGLNFDRVGQHYTIQAIAIRHD------ADDPAAFKAAVASVAAAT-QLNLVLMADDPDVLKEALAG 174 (446)
T ss_dssp SCHHHHHHHHHHHTTCCEEETTEEECCCEEEEECC------SSSTHHHHHHHHHHHTTC-CSEEEEECSCHHHHHHHHGG
T ss_pred CChHHHHHHHHHHHHHHHHHHHHhccCcEEEEEeC------CCCHHHHHHHHHHHHHhC-CCCEEEecCCHHHHHHHHHh
Confidence 4567888888887665 3444444332 122467999999998753 2222221 44444444
Q ss_pred cccchhhHHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCcceEeeceEEecCCCHHHHHHHHHHHHHcCCcEEeeccCcCC
Q 019890 223 FAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRP 302 (334)
Q Consensus 223 ~~HnlETv~~l~~~Vr~r~~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGlGETdEE~~etl~~Lre~gvd~vtigqYlrP 302 (334)
+.+-. .+...+. ..+|+.-.. -+++. |..+ +.+....+.+.++...+.++|++.+ ++-|
T Consensus 175 ~a~~~----plI~sat--~dn~e~m~~---lAa~y---~~pV-----i~~~~dl~~lkelv~~a~~~GI~~I----vLDP 233 (446)
T 4djd_C 175 VADRK----PLLYAAT--GANYEAMTA---LAKEN---NCPL-----AVYGNGLEELAELVDKIVALGHKQL----VLDP 233 (446)
T ss_dssp GGGGC----CEEEEEC--TTTHHHHHH---HHHHT---TCCE-----EEECSSHHHHHHHHHHHHHTTCCCE----EEEC
T ss_pred hcCcC----CeeEecc--hhhHHHHHH---HHHHc---CCcE-----EEEeccHHHHHHHHHHHHHCCCCcE----EECC
Confidence 43310 0000011 233433333 33333 1211 1223356667777777777777633 4556
Q ss_pred CCCCCcccccCCHHHHHHHHHHHH
Q 019890 303 SKRHMPVSEYITPEAFERYRALGM 326 (334)
Q Consensus 303 ~~~h~~v~~yv~P~~f~~~~~~a~ 326 (334)
+.+-+ .| +-+.+.+.|..|+
T Consensus 234 G~~g~---~~-t~~~~~~iRr~AL 253 (446)
T 4djd_C 234 GARET---SR-AIADFTQIRRLAI 253 (446)
T ss_dssp CCCSH---HH-HHHHHHHHHHHHH
T ss_pred CchhH---HH-HHHHHHHHHHHhh
Confidence 55322 11 3355555555554
No 206
>1vyr_A Pentaerythritol tetranitrate reductase; oxidoreductase, flavoenzyme, explosive degradation, steroid binding; HET: FMN TNF; 0.9A {Enterobacter cloacae} SCOP: c.1.4.1 PDB: 1gvq_A* 1gvr_A* 1gvs_A* 1h50_A* 1h51_A* 1h60_A* 1h61_A* 1h62_A* 1h63_A* 1gvo_A* 2aba_A* 3f03_K* 3kft_A* 3p7y_A* 3p80_A* 3p81_A* 3p62_A* 3p8i_A* 2abb_A* 3p67_A* ...
Probab=24.04 E-value=74 Score=30.24 Aligned_cols=52 Identities=12% Similarity=0.139 Sum_probs=35.4
Q ss_pred HHHHHHHHHHhCCCc-ceEeece---EEec---CCCHHHHHHHHHHHHHcCCcEEeecc
Q 019890 247 SLDVLMMAKDYVPAG-TLTKTSI---MLGC---GETPDQVVSTMEKVRAAGVDVMTFGQ 298 (334)
Q Consensus 247 sL~vL~~ak~~~p~G-l~tkTgi---MVGl---GETdEE~~etl~~Lre~gvd~vtigq 298 (334)
.+++++.+|+..+.. +.+|-+. .-|+ +.+.++..+.++.|.+.|+|.|++..
T Consensus 214 ~~eiv~avr~~vg~~~v~vrls~~~~~~~~~~~~~~~~~~~~~a~~l~~~G~d~i~v~~ 272 (364)
T 1vyr_A 214 VLEVVDAVCNEWSADRIGIRVSPIGTFQNVDNGPNEEADALYLIEELAKRGIAYLHMSE 272 (364)
T ss_dssp HHHHHHHHHHHSCGGGEEEEECCSSCBTTBCCCTTHHHHHHHHHHHHHHTTCSEEEEEC
T ss_pred HHHHHHHHHHhcCCCcEEEEEccccccccccCCCCCHHHHHHHHHHHHHhCCCEEEEec
Confidence 367788888876531 2222222 1121 44778899999999999999999974
No 207
>3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} SCOP: c.1.2.0
Probab=23.75 E-value=1.9e+02 Score=25.57 Aligned_cols=112 Identities=11% Similarity=0.178 Sum_probs=61.0
Q ss_pred HHHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhCCCCceeee-------eccccccccc---cchhhHHHH
Q 019890 164 NVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEAL-------VAKSGLNVFA---HNIETVEEL 233 (334)
Q Consensus 164 ~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~P~i~vE~L-------l~~ag~dv~~---HnlETv~~l 233 (334)
+.++.+.+.|.+.|+|-+..+.+ | ..+.++++.+++..-.+.+++- ..++|.|.+. |+..+..+
T Consensus 92 ~~i~~~~~~Gad~V~l~~~~~~~-p----~~l~~~i~~~~~~g~~v~~~v~t~eea~~a~~~Gad~Ig~~~~g~t~~~~- 165 (232)
T 3igs_A 92 DDVDALAQAGAAIIAVDGTARQR-P----VAVEALLARIHHHHLLTMADCSSVDDGLACQRLGADIIGTTMSGYTTPDT- 165 (232)
T ss_dssp HHHHHHHHHTCSEEEEECCSSCC-S----SCHHHHHHHHHHTTCEEEEECCSHHHHHHHHHTTCSEEECTTTTSSSSSC-
T ss_pred HHHHHHHHcCCCEEEECccccCC-H----HHHHHHHHHHHHCCCEEEEeCCCHHHHHHHHhCCCCEEEEcCccCCCCCC-
Confidence 34556678899988876554311 2 2366778888764111222222 5678888884 33322111
Q ss_pred HHhhcCCCCCHHHHHHHHHHHHHhCCCcceEeeceEEecCCCHHHHHHHHHHHHHcCCcEEeeccCc
Q 019890 234 QSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYM 300 (334)
Q Consensus 234 ~~~Vr~r~~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGlGETdEE~~etl~~Lre~gvd~vtigqYl 300 (334)
. ...+ +++++++++. .- ..+..|.| -|.+++.+. .++|+|-+-+|.-+
T Consensus 166 ----~-~~~~----~~~i~~l~~~-~i-pvIA~GGI----~t~~d~~~~----~~~GadgV~VGsal 213 (232)
T 3igs_A 166 ----P-EEPD----LPLVKALHDA-GC-RVIAEGRY----NSPALAAEA----IRYGAWAVTVGSAI 213 (232)
T ss_dssp ----C-SSCC----HHHHHHHHHT-TC-CEEEESCC----CSHHHHHHH----HHTTCSEEEECHHH
T ss_pred ----C-CCCC----HHHHHHHHhc-CC-cEEEECCC----CCHHHHHHH----HHcCCCEEEEehHh
Confidence 1 1233 4666666663 11 22333332 256666554 56799999999553
No 208
>3odg_A Xanthosine phosphorylase; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; HET: XAN; 1.64A {Yersinia pseudotuberculosis} PDB: 1yqq_A* 1yqu_A* 1yr3_A*
Probab=23.73 E-value=80 Score=29.32 Aligned_cols=135 Identities=16% Similarity=0.216 Sum_probs=69.1
Q ss_pred cCCCCCCCCCcccCCCCCC--CCCCchhHHHHHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhCCCCce--
Q 019890 136 GDTCTRGCRFCNVKTSRAP--PPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLI-- 211 (334)
Q Consensus 136 gdgCtr~C~FC~V~~~r~p--~~ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~P~i~v-- 211 (334)
|......+-|+. +|+- .+.++.+...-+..++.+|++.|+.||.-.. +. .+..|+-.|
T Consensus 80 G~l~G~~Vv~l~---Gr~H~~eg~~~~~~~a~i~~l~~lGv~~II~tgaaGg-l~--------------~~l~~GDlVi~ 141 (287)
T 3odg_A 80 GDLCGVPVMCMK---GRGHFYEGKGMSIMTNPVRTFKLMGCEFLFCTNAAGS-LR--------------PEVLPGSVVML 141 (287)
T ss_dssp EEETTEEEEEEE---SCCCGGGTTCGGGGHHHHHHHHHTTCSEEEEEEEEEE-SS--------------TTSCTTCEEEE
T ss_pred EEECCEEEEEEE---CCCcccCCCCHHHHHHHHHHHHHcCCCEEEEecceec-cC--------------CCCCCCCEEEe
Confidence 444455666654 4531 2345666677777889999999999985421 10 011222111
Q ss_pred -eee-eccccccccccchhhHHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCcceEeeceEEec-C---CCHHHHHHHHHH
Q 019890 212 -EAL-VAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC-G---ETPDQVVSTMEK 285 (334)
Q Consensus 212 -E~L-l~~ag~dv~~HnlETv~~l~~~Vr~r~~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGl-G---ETdEE~~etl~~ 285 (334)
..+ +....+. +.+|.+..-..+..|. ..++.+-+-.+.+.+++. |+.+..|.++.+ | ||.+|. +.
T Consensus 142 ~d~i~~t~~~p~-~g~~~~~~G~~~~~~~-~~~d~~L~~~a~~aA~~~---gi~~~~Gvy~~~~Gp~feT~AE~----~~ 212 (287)
T 3odg_A 142 KDHINTMPGTPL-VGPNDDRFGPRFFSLA-NAYDKDLRADMAKIAQQL---DIPLTEGVFVSYPGPCFETPAEI----RM 212 (287)
T ss_dssp EEEECCSSSCTT-CSSCCTTTCCSSCCCT-TSSCHHHHHHHHHHHHHH---TCCCEEEEEEECCCSSCCCHHHH----HH
T ss_pred hhhhhccCCCCc-cCCCccccCCCCCCCC-ccCCHHHHHHHHHHHHHC---CCCEEEEEEEEecCCccCCHHHH----HH
Confidence 011 1111111 1222111000122233 235554444455556665 566778887755 4 787774 45
Q ss_pred HHHcCCcEEeec
Q 019890 286 VRAAGVDVMTFG 297 (334)
Q Consensus 286 Lre~gvd~vtig 297 (334)
++..|+|.|..-
T Consensus 213 ~r~~GadaVgMe 224 (287)
T 3odg_A 213 MQIIGGDVVGMS 224 (287)
T ss_dssp HHHTTCSEEESS
T ss_pred HHHcCCEEEeCc
Confidence 678899988764
No 209
>2v9d_A YAGE; dihydrodipicolinic acid synthase, N-acetyl neuraminate lyase, NAL, lyase, DHDPS, prophage; 2.15A {Escherichia coli} PDB: 2v8z_A 3nev_A* 3n2x_A*
Probab=23.69 E-value=4.1e+02 Score=24.84 Aligned_cols=136 Identities=11% Similarity=0.138 Sum_probs=83.2
Q ss_pred CCCCchhHHHHHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhCCCCceeeeeccccccccccchhhHHHHH
Q 019890 155 PPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVAKSGLNVFAHNIETVEELQ 234 (334)
Q Consensus 155 ~~ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~P~i~vE~Ll~~ag~dv~~HnlETv~~l~ 234 (334)
..+|.+...+.++.+.+.|++-+++.|-+.. ......+.-.++++.+.+...+ .+-|+.+-
T Consensus 47 g~ID~~~l~~lv~~li~~Gv~Gl~v~GtTGE-~~~Ls~eEr~~vi~~~ve~~~g----------rvpViaGv-------- 107 (343)
T 2v9d_A 47 GQLDKPGTAALIDDLIKAGVDGLFFLGSGGE-FSQLGAEERKAIARFAIDHVDR----------RVPVLIGT-------- 107 (343)
T ss_dssp SSBCHHHHHHHHHHHHHTTCSCEEESSTTTT-GGGSCHHHHHHHHHHHHHHHTT----------SSCEEEEC--------
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEeCccccC-hhhCCHHHHHHHHHHHHHHhCC----------CCcEEEec--------
Confidence 4689999999999999999999988775421 1111223344566655543211 12233322
Q ss_pred HhhcCCCCCHHHHHHHHHHHHHhCCCcceEeeceEEecCCCHHHHHHHHHHHHHcCCcEEeeccCcCCCCCCCcccccCC
Q 019890 235 SAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMPVSEYIT 314 (334)
Q Consensus 235 ~~Vr~r~~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGlGETdEE~~etl~~Lre~gvd~vtigqYlrP~~~h~~v~~yv~ 314 (334)
-..+.++.++..+.+.+.--+|+.+-+-.. +.-|++++.+.++.+.+.- + ++|.-|--|.... --++
T Consensus 108 -----g~~st~eai~la~~A~~~Gadavlv~~P~Y--~~~s~~~l~~~f~~VA~a~-~-lPiilYn~P~~tg----~~l~ 174 (343)
T 2v9d_A 108 -----GGTNARETIELSQHAQQAGADGIVVINPYY--WKVSEANLIRYFEQVADSV-T-LPVMLYNFPALTG----QDLT 174 (343)
T ss_dssp -----CSSCHHHHHHHHHHHHHHTCSEEEEECCSS--SCCCHHHHHHHHHHHHHTC-S-SCEEEEECHHHHS----SCCC
T ss_pred -----CCCCHHHHHHHHHHHHhcCCCEEEECCCCC--CCCCHHHHHHHHHHHHHhc-C-CCEEEEeCchhcC----cCCC
Confidence 134677888888888887444443333322 2458999999999998752 2 5666676665321 2456
Q ss_pred HHHHHHHH
Q 019890 315 PEAFERYR 322 (334)
Q Consensus 315 P~~f~~~~ 322 (334)
|+.+.++.
T Consensus 175 ~e~~~~La 182 (343)
T 2v9d_A 175 PALVKTLA 182 (343)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 76666654
No 210
>3b4u_A Dihydrodipicolinate synthase; structural genomics, PSI-2, MC protein structure initiative, midwest center for structural genomics; 1.20A {Agrobacterium tumefaciens str}
Probab=23.68 E-value=4.1e+02 Score=24.05 Aligned_cols=138 Identities=14% Similarity=0.024 Sum_probs=84.6
Q ss_pred CCCCchhHHHHHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhCCCCceeeeeccccccccccchhhHHHHH
Q 019890 155 PPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVAKSGLNVFAHNIETVEELQ 234 (334)
Q Consensus 155 ~~ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~P~i~vE~Ll~~ag~dv~~HnlETv~~l~ 234 (334)
..+|.+...+.++.+.+.|++-+++.|-+. .......+.-.++++.+.+...+ ..-++.+-
T Consensus 19 g~iD~~~l~~lv~~li~~Gv~gl~~~GttG-E~~~Ls~~Er~~v~~~~~~~~~g----------r~pviaGv-------- 79 (294)
T 3b4u_A 19 GTVDIDAMIAHARRCLSNGCDSVTLFGTTG-EGCSVGSRERQAILSSFIAAGIA----------PSRIVTGV-------- 79 (294)
T ss_dssp SSBCHHHHHHHHHHHHHTTCSEEEESSTTT-TGGGSCHHHHHHHHHHHHHTTCC----------GGGEEEEE--------
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEECcccc-ChhhCCHHHHHHHHHHHHHHhCC----------CCcEEEeC--------
Confidence 468999999999999999999998877542 12222223445666666654221 12233322
Q ss_pred HhhcCCCCCHHHHHHHHHHHHHhCCCcceEeeceEEecC-CCHHHHHHHHHHHHHcCC-cEEeeccCcCCCCCCCccccc
Q 019890 235 SAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCG-ETPDQVVSTMEKVRAAGV-DVMTFGQYMRPSKRHMPVSEY 312 (334)
Q Consensus 235 ~~Vr~r~~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGlG-ETdEE~~etl~~Lre~gv-d~vtigqYlrP~~~h~~v~~y 312 (334)
-..+.++.++..+++.+.--+|+.+-+-.. +. -|++++.+.++.+.+.-. +-++|.-|--|.... --
T Consensus 80 -----g~~~t~~ai~la~~A~~~Gadavlv~~P~y--~~~~s~~~l~~~f~~va~a~p~~~lPiilYn~P~~tg----~~ 148 (294)
T 3b4u_A 80 -----LVDSIEDAADQSAEALNAGARNILLAPPSY--FKNVSDDGLFAWFSAVFSKIGKDARDILVYNIPSVTM----VT 148 (294)
T ss_dssp -----CCSSHHHHHHHHHHHHHTTCSEEEECCCCS--SCSCCHHHHHHHHHHHHHHHCTTCCCEEEEECHHHHS----CC
T ss_pred -----CCccHHHHHHHHHHHHhcCCCEEEEcCCcC--CCCCCHHHHHHHHHHHHHhcCCCCCcEEEEECcchhC----cC
Confidence 234677888888899886444333333222 14 599999999999887511 014666676665222 24
Q ss_pred CCHHHHHHHH
Q 019890 313 ITPEAFERYR 322 (334)
Q Consensus 313 v~P~~f~~~~ 322 (334)
++|+.+.++.
T Consensus 149 l~~~~~~~La 158 (294)
T 3b4u_A 149 LSVELVGRLK 158 (294)
T ss_dssp CCHHHHHHHH
T ss_pred CCHHHHHHHH
Confidence 5677766664
No 211
>2zxd_A Alpha-L-fucosidase, putative; TIM barrel, hydrolase; HET: ZXD; 2.15A {Thermotoga maritima} PDB: 2zwy_A* 2zx5_A* 2zx6_A* 2zx7_A* 2zwz_A* 2zx9_A* 2zxa_A* 2zxb_A* 2zx8_A* 1hl9_A* 1hl8_A* 1odu_A* 2wsp_A*
Probab=23.52 E-value=56 Score=32.35 Aligned_cols=56 Identities=16% Similarity=0.253 Sum_probs=36.1
Q ss_pred CCCCCchhHHHHHHHHHHCCCcEEEEeeecCCCC------------CCc--hHHHHHHHHHHHHhhCCCCceeee
Q 019890 154 PPPPDPDEPTNVAEAIASWGLDYVVITSVDRDDL------------ADQ--GSGHFAQTVRKLKELKPNMLIEAL 214 (334)
Q Consensus 154 p~~ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl------------~d~--Ga~~fa~lIr~Ik~~~P~i~vE~L 214 (334)
|...|+++-.+ .+++.|.+|||||+-+.|-+ .+. +.+-+.++++++++. ++.+-+.
T Consensus 102 p~~fDp~~Wa~---~~k~AGakyvvlTaKHHDGF~lwpSk~t~~ns~~~~pkrDlv~El~~A~rk~--Glk~GlY 171 (455)
T 2zxd_A 102 AEKWDPQEWAD---LFKKAGAKYVIPTTKHHDGFCLWGTKYTDFNSVKRGPKRDLVGDLAKAVREA--GLRFGVY 171 (455)
T ss_dssp CTTCCHHHHHH---HHHHTTCSEEEEEEECTTCCBSSCCSSCSCBTTTSTTCSCHHHHHHHHHHHT--TCEEEEE
T ss_pred cccCCHHHHHH---HHHHhCCCEEEEEeeccCCccccCCCCCCCcccccCCCCChHHHHHHHHHHc--CCeEEEE
Confidence 34566665555 55799999999999875311 111 235677888888875 6655554
No 212
>2jbm_A Nicotinate-nucleotide pyrophosphorylase; NAD, enzyme, metabolism, transferase, polymorphism, glycosyltransferase, pyridine nucleotide biosynthesis; HET: SRT; 2.0A {Homo sapiens} PDB: 3lar_A
Probab=23.15 E-value=1.6e+02 Score=27.36 Aligned_cols=51 Identities=24% Similarity=0.281 Sum_probs=35.8
Q ss_pred HHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhCCCCceeee----------eccccccccc
Q 019890 166 AEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEAL----------VAKSGLNVFA 224 (334)
Q Consensus 166 A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~P~i~vE~L----------l~~ag~dv~~ 224 (334)
++.+.+.|+++|.|-+ .+.+.+.++++.++...|++.+++. +.++|.|++.
T Consensus 210 ~~~A~~aGaD~I~ld~--------~~~~~l~~~v~~l~~~~~~~~I~ASGGIt~~ni~~~~~aGaD~i~ 270 (299)
T 2jbm_A 210 AVQAAEAGADLVLLDN--------FKPEELHPTATVLKAQFPSVAVEASGGITLDNLPQFCGPHIDVIS 270 (299)
T ss_dssp HHHHHHTTCSEEEEES--------CCHHHHHHHHHHHHHHCTTSEEEEESSCCTTTHHHHCCTTCCEEE
T ss_pred HHHHHHcCCCEEEECC--------CCHHHHHHHHHHhhccCCCeeEEEECCCCHHHHHHHHHCCCCEEE
Confidence 4444467999887733 2456788888888877787777775 6777777665
No 213
>1k77_A EC1530, hypothetical protein YGBM; TIM barrel, structural genomics, PSI, structure initiative; 1.63A {Escherichia coli} SCOP: c.1.15.5
Probab=23.14 E-value=2.1e+02 Score=24.24 Aligned_cols=25 Identities=8% Similarity=-0.089 Sum_probs=19.0
Q ss_pred chhHHHHHHHHHHCCCcEEEEeeec
Q 019890 159 PDEPTNVAEAIASWGLDYVVITSVD 183 (334)
Q Consensus 159 ~~Ep~~~A~av~~~GlkeVVLTSv~ 183 (334)
.+...+.++.++++|.+.|++..+.
T Consensus 84 ~~~~~~~i~~a~~lG~~~v~~~~g~ 108 (260)
T 1k77_A 84 HADIDLALEYALALNCEQVHVMAGV 108 (260)
T ss_dssp HHHHHHHHHHHHHTTCSEEECCCCB
T ss_pred HHHHHHHHHHHHHcCCCEEEECcCC
Confidence 4566777788889999999885443
No 214
>3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding, biotin, disease mutation, gluconeogenesis, ligase, lipid synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens} PDB: 3bg9_A
Probab=23.12 E-value=1.2e+02 Score=31.89 Aligned_cols=53 Identities=13% Similarity=0.123 Sum_probs=39.9
Q ss_pred CCchhHHHHHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhCCCCceee
Q 019890 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEA 213 (334)
Q Consensus 157 ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~P~i~vE~ 213 (334)
.+++...++++++.++|.+.|+|-=-. .-.-...+.++|++|++..|++.+++
T Consensus 258 ~~~e~~~~~a~~l~~~Ga~~I~l~DT~----G~~~P~~v~~lV~~lk~~~p~~~I~~ 310 (718)
T 3bg3_A 258 YSLQYYMGLAEELVRAGTHILCIKDMA----GLLKPTACTMLVSSLRDRFPDLPLHI 310 (718)
T ss_dssp TCHHHHHHHHHHHHHHTCSEEEEECTT----SCCCHHHHHHHHHHHHHHSTTCCEEE
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEcCcC----CCcCHHHHHHHHHHHHHhCCCCeEEE
Confidence 578999999999999999998883211 11124678899999999888765554
No 215
>3rmj_A 2-isopropylmalate synthase; LEUA, truncation, neisseria MENI TIM barrel, catalytic domain, dimer, leucine biosynthesis, ketoisovalerate; 1.95A {Neisseria meningitidis}
Probab=23.08 E-value=1.3e+02 Score=28.80 Aligned_cols=49 Identities=16% Similarity=0.135 Sum_probs=37.5
Q ss_pred CCCchhHHHHHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhCCC
Q 019890 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPN 208 (334)
Q Consensus 156 ~ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~P~ 208 (334)
..+++...++++++.++|.+.|.|-=- ..-.-...+.++|+++++..|+
T Consensus 153 r~~~~~~~~~~~~~~~~Ga~~i~l~DT----~G~~~P~~~~~lv~~l~~~~~~ 201 (370)
T 3rmj_A 153 RSEIDFLAEICGAVIEAGATTINIPDT----VGYSIPYKTEEFFRELIAKTPN 201 (370)
T ss_dssp GSCHHHHHHHHHHHHHHTCCEEEEECS----SSCCCHHHHHHHHHHHHHHSTT
T ss_pred ccCHHHHHHHHHHHHHcCCCEEEecCc----cCCcCHHHHHHHHHHHHHhCCC
Confidence 467899999999999999999888221 1112256789999999998886
No 216
>3e61_A Putative transcriptional repressor of ribose OPER; structural genomics, DNA-binding, transcripti regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp}
Probab=23.08 E-value=3.4e+02 Score=22.90 Aligned_cols=70 Identities=9% Similarity=0.076 Sum_probs=38.6
Q ss_pred CCHHHHHHHHHHHHHhCCCcceEeeceEEecCCCHHHHHHHHH-HHHHcCCcEEeeccCcCCCCCCCcccccCCHHHHHH
Q 019890 242 ANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTME-KVRAAGVDVMTFGQYMRPSKRHMPVSEYITPEAFER 320 (334)
Q Consensus 242 ~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGlGETdEE~~etl~-~Lre~gvd~vtigqYlrP~~~h~~v~~yv~P~~f~~ 320 (334)
.+.+.-.+.++.+.....+|+++ ++-+ + +.++ .|++.++-.|.++.+..... +|..+.+..
T Consensus 48 ~~~~~~~~~~~~l~~~~~dgiIi-------~~~~-~---~~~~~~l~~~~iPvV~~~~~~~~~~-------~V~~D~~~~ 109 (277)
T 3e61_A 48 NDIKKAQGYLATFVSHNCTGMIS-------TAFN-E---NIIENTLTDHHIPFVFIDRINNEHN-------GISTNHFKG 109 (277)
T ss_dssp TCHHHHHHHHHHHHHTTCSEEEE-------CGGG-H---HHHHHHHHHC-CCEEEGGGCC----------------HHHH
T ss_pred CCHHHHHHHHHHHHhCCCCEEEE-------ecCC-h---HHHHHHHHcCCCCEEEEeccCCCCC-------eEEechHHH
Confidence 34455566677766654555443 2222 2 2366 78899999999997664322 888888877
Q ss_pred HHHHHHHhh
Q 019890 321 YRALGMEMV 329 (334)
Q Consensus 321 ~~~~a~~~~ 329 (334)
-+..++.|.
T Consensus 110 g~~a~~~L~ 118 (277)
T 3e61_A 110 GQLQAEVVR 118 (277)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777777663
No 217
>2hmc_A AGR_L_411P, dihydrodipicolinate synthase; alpha-beta barrel (TIM barrel), structural genomics, PSI-2, structure initiative; HET: MSE; 1.90A {Agrobacterium tumefaciens str}
Probab=22.69 E-value=3.4e+02 Score=25.46 Aligned_cols=68 Identities=10% Similarity=0.132 Sum_probs=46.8
Q ss_pred CCHHHHHHHHHHHHHhCCCcceEeeceEEecC-CCHHHHHHHHHHHHHcCCcEEeec-cCc-C-CCCCCCcccccCCHHH
Q 019890 242 ANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCG-ETPDQVVSTMEKVRAAGVDVMTFG-QYM-R-PSKRHMPVSEYITPEA 317 (334)
Q Consensus 242 ~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGlG-ETdEE~~etl~~Lre~gvd~vtig-qYl-r-P~~~h~~v~~yv~P~~ 317 (334)
-+.+++.++++. ... | +.-+|+|.| .+-+|.++..+..+++|+|-+-+- +|. + |+ ..+-
T Consensus 76 Ls~eEr~~vi~~--~~~--g---rvpViaGvg~~st~eai~la~~A~~~Gadavlv~~P~y~~~~s----------~~~l 138 (344)
T 2hmc_A 76 LTDEQRMEGVER--LVK--A---GIPVIVGTGAVNTASAVAHAVHAQKVGAKGLMVIPRVLSRGSV----------IAAQ 138 (344)
T ss_dssp SCHHHHHHHHHH--HHH--T---TCCEEEECCCSSHHHHHHHHHHHHHHTCSEEEECCCCSSSTTC----------HHHH
T ss_pred CCHHHHHHHHHH--HhC--C---CCcEEEecCCCCHHHHHHHHHHHHhcCCCEEEECCCccCCCCC----------HHHH
Confidence 456777777776 221 2 345899995 677999999999999999976553 232 3 21 1234
Q ss_pred HHHHHHHHH
Q 019890 318 FERYRALGM 326 (334)
Q Consensus 318 f~~~~~~a~ 326 (334)
+++|+.+|.
T Consensus 139 ~~~f~~IA~ 147 (344)
T 2hmc_A 139 KAHFKAILS 147 (344)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 778888887
No 218
>3fkr_A L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL family, complex, pyruvate, lyase; HET: KPI; 1.80A {Azospirillum brasilense} PDB: 3fkk_A
Probab=22.69 E-value=4.5e+02 Score=24.09 Aligned_cols=136 Identities=11% Similarity=0.029 Sum_probs=83.9
Q ss_pred CCCCchhHHHHHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhCCCCceeeeeccccccccccchhhHHHHH
Q 019890 155 PPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVAKSGLNVFAHNIETVEELQ 234 (334)
Q Consensus 155 ~~ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~P~i~vE~Ll~~ag~dv~~HnlETv~~l~ 234 (334)
..+|.+...+.++.+.+.|++-+++.|-+.. .+....+.-.++++.+.+...+ .+-++.+-
T Consensus 24 g~iD~~~l~~lv~~li~~Gv~gl~v~GtTGE-~~~Ls~~Er~~v~~~~~~~~~g----------rvpviaGv-------- 84 (309)
T 3fkr_A 24 GDLDLASQKRAVDFMIDAGSDGLCILANFSE-QFAITDDERDVLTRTILEHVAG----------RVPVIVTT-------- 84 (309)
T ss_dssp SSBCHHHHHHHHHHHHHTTCSCEEESSGGGT-GGGSCHHHHHHHHHHHHHHHTT----------SSCEEEEC--------
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEECccccC-cccCCHHHHHHHHHHHHHHhCC----------CCcEEEec--------
Confidence 4689999999999999999999988775421 1111223344566655543211 12233322
Q ss_pred HhhcCCCCCHHHHHHHHHHHHHhCCCcceEeeceEEe--cCCCHHHHHHHHHHHHHcCCcEEeeccCcCCCCCCCccccc
Q 019890 235 SAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLG--CGETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMPVSEY 312 (334)
Q Consensus 235 ~~Vr~r~~tye~sL~vL~~ak~~~p~Gl~tkTgiMVG--lGETdEE~~etl~~Lre~gvd~vtigqYlrP~~~h~~v~~y 312 (334)
-..+.++.++..+++.+.--+|+.+-+- ..+ +.=|++++.+.++.+.+.- -++|.-|--|. .. --
T Consensus 85 -----g~~~t~~ai~la~~A~~~Gadavlv~~P-yy~~~~~~s~~~l~~~f~~va~a~--~lPiilYn~P~-tg----~~ 151 (309)
T 3fkr_A 85 -----SHYSTQVCAARSLRAQQLGAAMVMAMPP-YHGATFRVPEAQIFEFYARVSDAI--AIPIMVQDAPA-SG----TA 151 (309)
T ss_dssp -----CCSSHHHHHHHHHHHHHTTCSEEEECCS-CBTTTBCCCHHHHHHHHHHHHHHC--SSCEEEEECGG-GC----CC
T ss_pred -----CCchHHHHHHHHHHHHHcCCCEEEEcCC-CCccCCCCCHHHHHHHHHHHHHhc--CCCEEEEeCCC-CC----CC
Confidence 2356788889999998874443333332 222 4569999999999998752 24555676673 22 24
Q ss_pred CCHHHHHHHH
Q 019890 313 ITPEAFERYR 322 (334)
Q Consensus 313 v~P~~f~~~~ 322 (334)
++|+.+.++.
T Consensus 152 l~~~~~~~La 161 (309)
T 3fkr_A 152 LSAPFLARMA 161 (309)
T ss_dssp CCHHHHHHHH
T ss_pred CCHHHHHHHH
Confidence 6777666664
No 219
>2wqp_A Polysialic acid capsule biosynthesis protein SIAC; NEUB, inhibitor, TIM barrel, sialic acid synthase, transfera; HET: WQP; 1.75A {Neisseria meningitidis} PDB: 2zdr_A 1xuz_A* 1xuu_A 3cm4_A
Probab=22.61 E-value=2.2e+02 Score=27.25 Aligned_cols=116 Identities=9% Similarity=0.117 Sum_probs=0.0
Q ss_pred CchhHHHHHHHHHHCCCcEEEEe--------eecCCCCC---------------CchHHHHHHHHHHHHhhCCCCceeee
Q 019890 158 DPDEPTNVAEAIASWGLDYVVIT--------SVDRDDLA---------------DQGSGHFAQTVRKLKELKPNMLIEAL 214 (334)
Q Consensus 158 d~~Ep~~~A~av~~~GlkeVVLT--------Sv~rdDl~---------------d~Ga~~fa~lIr~Ik~~~P~i~vE~L 214 (334)
+.+-..+.++++++.|.+-|-.+ +.+..++. ..+.+.+..+.+.-++.-=.+..+++
T Consensus 33 s~e~a~~li~~ak~aGadavKfq~~k~~tl~s~~~~~fq~~~~~~~~y~~~~~~~l~~e~~~~L~~~~~~~Gi~~~st~~ 112 (349)
T 2wqp_A 33 SLKTAFEMVDAAYNAGAEVVKHQTHIVEDEMSDEAKQVIPGNADVSIYEIMERCALNEEDEIKLKEYVESKGMIFISTLF 112 (349)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEEECCHHHHCCGGGGGCCCTTCSSCHHHHHHHHCCCHHHHHHHHHHHHHTTCEEEEEEC
T ss_pred CHHHHHHHHHHHHHhCCCEEeeeecccccccCcchhccccCCCCccHHHHHHHhCCCHHHHHHHHHHHHHhCCeEEEeeC
Q ss_pred -------eccccccccccchhhHHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCcceEeeceEEecCCCHHHHHHHHHHHH
Q 019890 215 -------VAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVR 287 (334)
Q Consensus 215 -------l~~ag~dv~~HnlETv~~l~~~Vr~r~~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGlGETdEE~~etl~~Lr 287 (334)
+.+-++|+|. -...=-+.+.+|+++.+.... +.++||+ . |.+|+.+.+..++
T Consensus 113 d~~svd~l~~~~v~~~K---------------I~S~~~~n~~LL~~va~~gkP-viLstGm----a-t~~Ei~~Ave~i~ 171 (349)
T 2wqp_A 113 SRAAALRLQRMDIPAYK---------------IGSGECNNYPLIKLVASFGKP-IILSTGM----N-SIESIKKSVEIIR 171 (349)
T ss_dssp SHHHHHHHHHHTCSCEE---------------ECGGGTTCHHHHHHHHTTCSC-EEEECTT----C-CHHHHHHHHHHHH
T ss_pred CHHHHHHHHhcCCCEEE---------------ECcccccCHHHHHHHHhcCCe-EEEECCC----C-CHHHHHHHHHHHH
Q ss_pred HcCCcEE
Q 019890 288 AAGVDVM 294 (334)
Q Consensus 288 e~gvd~v 294 (334)
+.|.+.+
T Consensus 172 ~~G~~ii 178 (349)
T 2wqp_A 172 EAGVPYA 178 (349)
T ss_dssp HHTCCEE
T ss_pred HcCCCEE
No 220
>1itu_A Renal dipeptidase; glycoprotein, membrane-bound, zinc protease BET lactamase, cilastatin, complex (hydrolase-inhibitor), hydro; HET: NAG CIL; 2.00A {Homo sapiens} SCOP: c.1.9.7 PDB: 1itq_A*
Probab=22.55 E-value=77 Score=30.55 Aligned_cols=124 Identities=21% Similarity=0.346 Sum_probs=67.7
Q ss_pred HHHHHHHHCCCcEEEEeeecCCCCC-------------CchHHHH-HHHHHHHHhhCCCCceeee----------ec-cc
Q 019890 164 NVAEAIASWGLDYVVITSVDRDDLA-------------DQGSGHF-AQTVRKLKELKPNMLIEAL----------VA-KS 218 (334)
Q Consensus 164 ~~A~av~~~GlkeVVLTSv~rdDl~-------------d~Ga~~f-a~lIr~Ik~~~P~i~vE~L----------l~-~a 218 (334)
...+.+.++|++++-||=-....+. ++|-..| .++|+++.+. ++.|.+- +. ..
T Consensus 135 ~~L~~~y~lGvR~~~Lthn~~N~~a~~~~~~~~~~~~~~~GLT~~G~~vV~emnrl--GmivDlSH~s~~~~~dvl~~s~ 212 (369)
T 1itu_A 135 GVLRALYQLGMRYLTLTHSCNTPWADNWLVDTGDSEPQSQGLSPFGQRVVKELNRL--GVLIDLAHVSVATMKATLQLSR 212 (369)
T ss_dssp HHHHHHHHTTEEEEESCSSSCCSSBCBGGGGGTSSCCSSSSBCHHHHHHHHHHHHH--TCEEECTTBCHHHHHHHHHHCS
T ss_pred HHHHHHHHcCCeEEEeecccCCcccccccccCCCCcccCCCcCHhHHHHHHHHHHc--CCEEEcCCCCHHHHHHHHHhcC
Confidence 4566788999999999842221111 1232222 5678877765 4544442 11 12
Q ss_pred cccccccchhhHHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCcceEeeceEEec-C----CCHHHHHHHHHHHHHc-CCc
Q 019890 219 GLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC-G----ETPDQVVSTMEKVRAA-GVD 292 (334)
Q Consensus 219 g~dv~~HnlETv~~l~~~Vr~r~~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGl-G----ETdEE~~etl~~Lre~-gvd 292 (334)
.|=++.|.- +..+.+.- |.-+ -+.|+.+++. +| .+.-.+.-+| + -|-+++.++++.+.++ |+|
T Consensus 213 ~PviaSHSn--~ral~~h~--RNl~----De~l~~la~~--GG-vigv~~~~~fl~~~~~~t~~~~~~hi~hi~~~~G~d 281 (369)
T 1itu_A 213 APVIFSHSS--AYSVCASR--RNVP----DDVLRLVKQT--DS-LVMVNFYNNYISCTNKANLSQVADHLDHIKEVAGAR 281 (369)
T ss_dssp SCCEESSCC--BTTTSCCT--TSBC----HHHHHHHHHH--TC-EEEECCCHHHHTSSSCCBHHHHHHHHHHHHHHHCGG
T ss_pred CCEEEeCCC--hhhcCCCC--CCCC----HHHHHHHHHc--CC-eEEEEechhhcCCCCCCCHHHHHHHHHHHHHhhCCC
Confidence 243455531 11122111 1222 2455555554 34 3444444444 2 3889999999988875 999
Q ss_pred EEeeccCc
Q 019890 293 VMTFGQYM 300 (334)
Q Consensus 293 ~vtigqYl 300 (334)
+|.||.=.
T Consensus 282 hVgiGsDf 289 (369)
T 1itu_A 282 AVGFGGDF 289 (369)
T ss_dssp GEEECCCT
T ss_pred eEEECCCC
Confidence 99998643
No 221
>3cu2_A Ribulose-5-phosphate 3-epimerase; YP_718263.1, ribulose-PHOS epimerase family, structural genomics, joint center for STR genomics, JCSG; 1.91A {Haemophilus somnus}
Probab=22.53 E-value=2.9e+02 Score=24.55 Aligned_cols=122 Identities=17% Similarity=0.187 Sum_probs=67.5
Q ss_pred chhHHHHHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhC-----------------CCCceeee--ecccc
Q 019890 159 PDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELK-----------------PNMLIEAL--VAKSG 219 (334)
Q Consensus 159 ~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~-----------------P~i~vE~L--l~~ag 219 (334)
.++|...++.+.+.|.+.|.+-.... .++.++++.|++.+ |...++.+ +. .+
T Consensus 78 v~~p~~~i~~~~~aGAd~itvH~ea~--------~~~~~~i~~i~~~~~~~~~~~~g~~~gv~l~p~Tp~~~l~~~l-~~ 148 (237)
T 3cu2_A 78 VRNQLEVAKAVVANGANLVTLQLEQY--------HDFALTIEWLAKQKTTYANQVYPVLIGACLCPETPISELEPYL-DQ 148 (237)
T ss_dssp CSCHHHHHHHHHHTTCSEEEEETTCT--------TSHHHHHHHHTTCEEEETTEEEECEEEEEECTTSCGGGGTTTT-TT
T ss_pred EECHHHHHHHHHHcCCCEEEEecCCc--------ccHHHHHHHHHhcccccccccCCceEEEEEeCCChHHHHHHHh-hc
Confidence 35678889999999999877654321 24678889887651 22222222 11 12
Q ss_pred ccccccchhhHHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCcceEeeceEEecCCCHHHHHHHHHHHHH--cCCcEEeec
Q 019890 220 LNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRA--AGVDVMTFG 297 (334)
Q Consensus 220 ~dv~~HnlETv~~l~~~Vr~r~~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGlGETdEE~~etl~~Lre--~gvd~vtig 297 (334)
+|.+-.- ++..-| - .+.--...++.++++++..+. --...-|.|.-|=+.+ ++..+.+ .|.|.+-+|
T Consensus 149 ~D~vlvM--sv~pgf---g-gq~f~~~~l~ki~~lr~~~~~-~~~~~~I~vdGGI~~~----~~~~~~~~~aGad~~VvG 217 (237)
T 3cu2_A 149 IDVIQLL--TLDPRN---G-TKYPSELILDRVIQVEKRLGN-RRVEKLINIDGSMTLE----LAKYFKQGTHQIDWLVSG 217 (237)
T ss_dssp CSEEEEE--SEETTT---T-EECCHHHHHHHHHHHHHHHGG-GGGGCEEEEESSCCHH----HHHHHHHSSSCCCCEEEC
T ss_pred Cceeeee--eeccCc---C-CeecChhHHHHHHHHHHHHHh-cCCCceEEEECCcCHH----HHHHHHHhCCCCcEEEEe
Confidence 3322110 000000 0 112244566777777775432 1112336666677755 5566789 999999999
Q ss_pred cCc
Q 019890 298 QYM 300 (334)
Q Consensus 298 qYl 300 (334)
.++
T Consensus 218 SaI 220 (237)
T 3cu2_A 218 SAL 220 (237)
T ss_dssp GGG
T ss_pred eHH
Confidence 775
No 222
>3noy_A 4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth; iron-sulfur protein, non-mevalonate pathway, terpene biosynt isoprenoid biosynthesis; 2.70A {Aquifex aeolicus}
Probab=22.52 E-value=5.3e+02 Score=24.90 Aligned_cols=139 Identities=11% Similarity=0.120 Sum_probs=84.5
Q ss_pred CCCchhHHHHHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhCCC-Cceee-e-------eccccccccccc
Q 019890 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPN-MLIEA-L-------VAKSGLNVFAHN 226 (334)
Q Consensus 156 ~ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~P~-i~vE~-L-------l~~ag~dv~~Hn 226 (334)
..|.+...++++++.+.|..-|-++-.+ . .-++.+..|++..+- +...+ + ..++|+|-+-.|
T Consensus 42 T~D~~atv~Qi~~l~~aG~diVRvavp~------~---~~a~al~~I~~~~~vPlvaDiHf~~~lal~a~e~G~dklRIN 112 (366)
T 3noy_A 42 THDVEATLNQIKRLYEAGCEIVRVAVPH------K---EDVEALEEIVKKSPMPVIADIHFAPSYAFLSMEKGVHGIRIN 112 (366)
T ss_dssp TTCHHHHHHHHHHHHHTTCCEEEEECCS------H---HHHHHHHHHHHHCSSCEEEECCSCHHHHHHHHHTTCSEEEEC
T ss_pred CcCHHHHHHHHHHHHHcCCCEEEeCCCC------h---HHHHHHHHHHhcCCCCEEEeCCCCHHHHHHHHHhCCCeEEEC
Confidence 5788899999999999999888775432 1 236888888887531 11111 0 345667766666
Q ss_pred hhhHHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCcceEeeceEEe---------cC-CCHHHHHH----HHHHHHHcCCc
Q 019890 227 IETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLG---------CG-ETPDQVVS----TMEKVRAAGVD 292 (334)
Q Consensus 227 lETv~~l~~~Vr~r~~tye~sL~vL~~ak~~~p~Gl~tkTgiMVG---------lG-ETdEE~~e----tl~~Lre~gvd 292 (334)
. -- +. +-++.-++++.+|+. |+.+.-|+=-| +| .|.|.+++ .++.++++||+
T Consensus 113 P----GN---ig----~~~~~~~vv~~ak~~---~~piRIGvN~GSL~~~ll~~yg~~~~eamVeSAl~~~~~~e~~gf~ 178 (366)
T 3noy_A 113 P----GN---IG----KEEIVREIVEEAKRR---GVAVRIGVNSGSLEKDLLEKYGYPSAEALAESALRWSEKFEKWGFT 178 (366)
T ss_dssp H----HH---HS----CHHHHHHHHHHHHHH---TCEEEEEEEGGGCCHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCC
T ss_pred C----cc---cC----chhHHHHHHHHHHHc---CCCEEEecCCcCCCHHHHHhcCCCCHHHHHHHHHHHHHHHHhCCCC
Confidence 2 11 11 234566789999997 56666543333 54 67766554 46778889997
Q ss_pred EEeeccCcCCCCCCCcccccCCHHHHHHHHHHHHHh
Q 019890 293 VMTFGQYMRPSKRHMPVSEYITPEAFERYRALGMEM 328 (334)
Q Consensus 293 ~vtigqYlrP~~~h~~v~~yv~P~~f~~~~~~a~~~ 328 (334)
.+-+. ++. -=.+...+.|+.++...
T Consensus 179 ~iviS---------~K~--S~v~~~i~ayr~la~~~ 203 (366)
T 3noy_A 179 NYKVS---------IKG--SDVLQNVRANLIFAERT 203 (366)
T ss_dssp CEEEE---------EEC--SSHHHHHHHHHHHHHHC
T ss_pred eEEEe---------eec--CChHHHHHHHHHHHhcc
Confidence 55442 111 11234466677776653
No 223
>2rfg_A Dihydrodipicolinate synthase; beta barrel, amino-acid biosynthesis, diaminopimelate biosyn lyase, lysine biosynthesis, schiff base; 1.50A {Hahella chejuensis}
Probab=22.37 E-value=1.5e+02 Score=27.22 Aligned_cols=136 Identities=14% Similarity=0.102 Sum_probs=82.8
Q ss_pred CCCCchhHHHHHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhCCCCceeeeeccccccccccchhhHHHHH
Q 019890 155 PPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVAKSGLNVFAHNIETVEELQ 234 (334)
Q Consensus 155 ~~ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~P~i~vE~Ll~~ag~dv~~HnlETv~~l~ 234 (334)
..+|.+...+.++.+.+.|++-+++.|-+.. .+....+.-.++++.+.+...+ .+-++.+-
T Consensus 16 g~iD~~~l~~lv~~li~~Gv~gi~v~GttGE-~~~Ls~~Er~~v~~~~~~~~~g----------rvpviaGv-------- 76 (297)
T 2rfg_A 16 GQVDEKALAGLVDWQIKHGAHGLVPVGTTGE-SPTLTEEEHKRVVALVAEQAQG----------RVPVIAGA-------- 76 (297)
T ss_dssp TEECHHHHHHHHHHHHHTTCSEEECSSGGGT-GGGSCHHHHHHHHHHHHHHHTT----------SSCBEEEC--------
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEECccccc-hhhCCHHHHHHHHHHHHHHhCC----------CCeEEEcc--------
Confidence 3588899999999999999999988765421 1111223344566655543221 12233322
Q ss_pred HhhcCCCCCHHHHHHHHHHHHHhCCCcceEeeceEEecCCCHHHHHHHHHHHHHcCCcEEeeccCcCCCCCCCcccccCC
Q 019890 235 SAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMPVSEYIT 314 (334)
Q Consensus 235 ~~Vr~r~~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGlGETdEE~~etl~~Lre~gvd~vtigqYlrP~~~h~~v~~yv~ 314 (334)
-..+.++.++..+.+++.--+|+.+-+-.. +.-|++++.+.++.+.+.- + ++|.-|--|.... .-++
T Consensus 77 -----g~~~t~~ai~la~~A~~~Gadavlv~~P~y--~~~s~~~l~~~f~~va~a~-~-lPiilYn~P~~tg----~~l~ 143 (297)
T 2rfg_A 77 -----GSNNPVEAVRYAQHAQQAGADAVLCVAGYY--NRPSQEGLYQHFKMVHDAI-D-IPIIVYNIPPRAV----VDIK 143 (297)
T ss_dssp -----CCSSHHHHHHHHHHHHHHTCSEEEECCCTT--TCCCHHHHHHHHHHHHHHC-S-SCEEEEECHHHHS----CCCC
T ss_pred -----CCCCHHHHHHHHHHHHhcCCCEEEEcCCCC--CCCCHHHHHHHHHHHHHhc-C-CCEEEEeCccccC----CCCC
Confidence 134677888888898887444333322221 2458999999999988752 2 5666676665422 2456
Q ss_pred HHHHHHHH
Q 019890 315 PEAFERYR 322 (334)
Q Consensus 315 P~~f~~~~ 322 (334)
|+.+.++.
T Consensus 144 ~~~~~~La 151 (297)
T 2rfg_A 144 PETMARLA 151 (297)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77766664
No 224
>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*
Probab=22.37 E-value=2.1e+02 Score=25.27 Aligned_cols=52 Identities=19% Similarity=0.321 Sum_probs=31.3
Q ss_pred HHHHHHHHHCCCcEEEEeeecCCCC-----------CCchHHHHHHHHHHHHhhCCCCceeee
Q 019890 163 TNVAEAIASWGLDYVVITSVDRDDL-----------ADQGSGHFAQTVRKLKELKPNMLIEAL 214 (334)
Q Consensus 163 ~~~A~av~~~GlkeVVLTSv~rdDl-----------~d~Ga~~fa~lIr~Ik~~~P~i~vE~L 214 (334)
..+|+.+...|+++|+|.-.+.-+. .|-|......+.+.|++.+|++.++.+
T Consensus 44 ~~va~~La~~Gv~~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~v~~~ 106 (249)
T 1jw9_B 44 CAASQYLASAGVGNLTLLDFDTVSLSNLQRQTLHSDATVGQPKVESARDALTRINPHIAITPV 106 (249)
T ss_dssp HHHHHHHHHHTCSEEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEE
T ss_pred HHHHHHHHHcCCCeEEEEcCCCcccccCCcccccChhhcCcHHHHHHHHHHHHHCCCcEEEEE
Confidence 4567888899999988854332111 122322334455667777888766654
No 225
>2wkj_A N-acetylneuraminate lyase; directed evolution, sialic acid mimetics, aldolase, S base, carbohydrate metabolism, N-acetylneuraminic acid LYAS; HET: KPI PYR; 1.45A {Escherichia coli} PDB: 2wnq_A 2xfw_A* 2wpb_A* 2wnz_A* 2ygy_A* 2wo5_A* 2wnn_A* 3lbm_A 3lbc_A 3lcf_A 3lcl_A 3lcg_A 3lch_A 3lci_A 1hl2_A 1fdy_A 1fdz_A 1nal_1 3lcx_A 3lcw_A
Probab=22.29 E-value=4.5e+02 Score=23.96 Aligned_cols=137 Identities=12% Similarity=0.077 Sum_probs=82.5
Q ss_pred CCCCchhHHHHHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhCCCCceeeeeccccccccccchhhHHHHH
Q 019890 155 PPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVAKSGLNVFAHNIETVEELQ 234 (334)
Q Consensus 155 ~~ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~P~i~vE~Ll~~ag~dv~~HnlETv~~l~ 234 (334)
..+|.+...+.++.+.+.|++-+++.|-+.. .+....+.-.++++.+.+...+ .+-++.+-
T Consensus 27 g~iD~~~l~~lv~~li~~Gv~Gl~v~GtTGE-~~~Ls~eEr~~v~~~~~~~~~g----------rvpViaGv-------- 87 (303)
T 2wkj_A 27 QALDKASLRRLVQFNIQQGIDGLYVGGSTGE-AFVQSLSEREQVLEIVAEEAKG----------KIKLIAHV-------- 87 (303)
T ss_dssp SSBCHHHHHHHHHHHHHTTCSEEEESSTTTT-GGGSCHHHHHHHHHHHHHHHTT----------TSEEEEEC--------
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEECeeccC-hhhCCHHHHHHHHHHHHHHhCC----------CCcEEEec--------
Confidence 4689999999999999999999988775431 2211223344566655543211 12233321
Q ss_pred HhhcCCCCCHHHHHHHHHHHHHhCCCcceEeeceEEecCCCHHHHHHHHHHHHHcCCcEEeeccCcCCCCCCCcccccCC
Q 019890 235 SAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMPVSEYIT 314 (334)
Q Consensus 235 ~~Vr~r~~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGlGETdEE~~etl~~Lre~gvd~vtigqYlrP~~~h~~v~~yv~ 314 (334)
-..+.++.++..+.+.+.--+|+.+-+-... .-|++++.+.++.+.+.- +-++|.-|--|..... -++
T Consensus 88 -----g~~~t~~ai~la~~A~~~Gadavlv~~P~y~--~~s~~~l~~~f~~va~a~-~~lPiilYn~P~~tg~----~l~ 155 (303)
T 2wkj_A 88 -----GCVSTAESQQLAASAKRYGFDAVSAVTPFYY--PFSFEEHCDHYRAIIDSA-DGLPMVVYNIPALSGV----KLT 155 (303)
T ss_dssp -----CCSSHHHHHHHHHHHHHHTCSEEEEECCCSS--CCCHHHHHHHHHHHHHHH-TTCCEEEEECHHHHCC----CCC
T ss_pred -----CCCCHHHHHHHHHHHHhCCCCEEEecCCCCC--CCCHHHHHHHHHHHHHhC-CCCCEEEEeCccccCC----CCC
Confidence 1346778888888888874444433333222 448999999999988751 1145555666653221 356
Q ss_pred HHHHHHHH
Q 019890 315 PEAFERYR 322 (334)
Q Consensus 315 P~~f~~~~ 322 (334)
|+.+.++.
T Consensus 156 ~~~~~~La 163 (303)
T 2wkj_A 156 LDQINTLV 163 (303)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 76666554
No 226
>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*
Probab=22.22 E-value=1.2e+02 Score=30.26 Aligned_cols=121 Identities=18% Similarity=0.288 Sum_probs=69.8
Q ss_pred hhHHHHHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhCCCCce---eee-------eccccccccccc---
Q 019890 160 DEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLI---EAL-------VAKSGLNVFAHN--- 226 (334)
Q Consensus 160 ~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~P~i~v---E~L-------l~~ag~dv~~Hn--- 226 (334)
++..+.++++.+.|++.|+|.+.+. ....+.++|++|++..|++.| .+. +.++|.|.+-..
T Consensus 255 ~d~~era~aLveaGvd~I~Id~a~g------~~~~v~~~i~~i~~~~~~~~vi~g~v~t~e~a~~~~~aGad~i~vg~g~ 328 (511)
T 3usb_A 255 ADAMTRIDALVKASVDAIVLDTAHG------HSQGVIDKVKEVRAKYPSLNIIAGNVATAEATKALIEAGANVVKVGIGP 328 (511)
T ss_dssp TTHHHHHHHHHHTTCSEEEEECSCT------TSHHHHHHHHHHHHHCTTSEEEEEEECSHHHHHHHHHHTCSEEEECSSC
T ss_pred cchHHHHHHHHhhccceEEeccccc------chhhhhhHHHHHHHhCCCceEEeeeeccHHHHHHHHHhCCCEEEECCCC
Confidence 4556778888999999999976542 235678899999999886432 121 677788876321
Q ss_pred --hhhHHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCcceEeeceEEec-CCCHHHHHHHHHHHHHcCCcEEeeccCc
Q 019890 227 --IETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC-GETPDQVVSTMEKVRAAGVDVMTFGQYM 300 (334)
Q Consensus 227 --lETv~~l~~~Vr~r~~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGl-GETdEE~~etl~~Lre~gvd~vtigqYl 300 (334)
+-+ .+...-+. ..+..-..++.+.+++. ++ -+|..- --+.+|+...+ .+|.|.|-+|..+
T Consensus 329 gsi~~-~~~~~g~g--~p~~~~l~~v~~~~~~~---~i----PVIa~GGI~~~~di~kal----a~GA~~V~vGs~~ 391 (511)
T 3usb_A 329 GSICT-TRVVAGVG--VPQLTAVYDCATEARKH---GI----PVIADGGIKYSGDMVKAL----AAGAHVVMLGSMF 391 (511)
T ss_dssp STTCC-HHHHHCCC--CCHHHHHHHHHHHHHTT---TC----CEEEESCCCSHHHHHHHH----HTTCSEEEESTTT
T ss_pred ccccc-cccccCCC--CCcHHHHHHHHHHHHhC---CC----cEEEeCCCCCHHHHHHHH----HhCchhheecHHH
Confidence 111 11111111 12232222333333332 12 234433 24677777765 4799999999765
No 227
>1vli_A Spore coat polysaccharide biosynthesis protein SP; 2636322, JCSG, protein structure initiative, BS SPSE, PSI; 2.38A {Bacillus subtilis} SCOP: b.85.1.1 c.1.10.6
Probab=22.07 E-value=1.3e+02 Score=29.24 Aligned_cols=43 Identities=16% Similarity=0.185 Sum_probs=30.1
Q ss_pred HHHHHHHHHhCCCcceEeeceEEecCCCHHHHHHHHHHHHHcCCcEEee
Q 019890 248 LDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTF 296 (334)
Q Consensus 248 L~vL~~ak~~~p~Gl~tkTgiMVGlGETdEE~~etl~~Lre~gvd~vti 296 (334)
+.+|+++.+.... +.++||+ . |.+|+.+.+..+++.|...|.+
T Consensus 148 ~pLL~~va~~gKP-ViLStGm----a-Tl~Ei~~Ave~i~~~Gn~~iiL 190 (385)
T 1vli_A 148 LPLLKYVARLNRP-MIFSTAG----A-EISDVHEAWRTIRAEGNNQIAI 190 (385)
T ss_dssp HHHHHHHHTTCSC-EEEECTT----C-CHHHHHHHHHHHHTTTCCCEEE
T ss_pred HHHHHHHHhcCCe-EEEECCC----C-CHHHHHHHHHHHHHCCCCcEEE
Confidence 5667776665434 6667654 4 9999999999999988754443
No 228
>3ues_A Alpha-1,3/4-fucosidase; TIM barrel, hydrolase-hydrolase inhibitor complex; HET: DFU; 1.60A {Bifidobacterium longum subsp} PDB: 3mo4_A* 3uet_A*
Probab=21.97 E-value=62 Score=32.29 Aligned_cols=56 Identities=16% Similarity=0.268 Sum_probs=35.6
Q ss_pred CCCCCchhHHHHHHHHHHCCCcEEEEeeecCCCC-------CCc---------h-HHHHHHHHHHHHhhCCCCceeee
Q 019890 154 PPPPDPDEPTNVAEAIASWGLDYVVITSVDRDDL-------ADQ---------G-SGHFAQTVRKLKELKPNMLIEAL 214 (334)
Q Consensus 154 p~~ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl-------~d~---------G-a~~fa~lIr~Ik~~~P~i~vE~L 214 (334)
|...|+++-. +.+++.|.+|||||+-+.|-+ .++ | .+-+.+++++.++. ++.+-++
T Consensus 59 p~~fd~~~W~---~~~k~aGakyvvlt~kHHdGF~lw~S~~t~~~v~~~p~~~~krDiv~el~~A~r~~--gl~~g~Y 131 (478)
T 3ues_A 59 PRNVDVDQWM---DALVAGGMAGVILTCKHHDGFCLWPSRLTRHTVASSPWREGKGDLVREVSESARRH--GLKFGVY 131 (478)
T ss_dssp CSSCCHHHHH---HHHHHTTCSEEEEEEECTTCCBSSCCTTCSCBGGGSSGGGGTCCHHHHHHHHHHHT--TCEEEEE
T ss_pred cccCCHHHHH---HHHHHcCCCEEEEeEEecCCccccCCCCCCcccccCCccCCCCCHHHHHHHHHHHc--CCeEEEE
Confidence 4456666555 455799999999999876422 221 1 24566777777764 5666555
No 229
>4fo4_A Inosine 5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.03A {Vibrio cholerae o1 biovar el tor} PDB: 4ff0_A* 4hlv_A* 4fez_A
Probab=21.86 E-value=2.6e+02 Score=26.72 Aligned_cols=85 Identities=16% Similarity=0.165 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhCCC-Cceeee-----------eccccccccccchhhHHHHHHhhcCCCCCHHHHHHHHHHHHHhCC
Q 019890 192 SGHFAQTVRKLKELKPN-MLIEAL-----------VAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVP 259 (334)
Q Consensus 192 a~~fa~lIr~Ik~~~P~-i~vE~L-----------l~~ag~dv~~HnlETv~~l~~~Vr~r~~tye~sL~vL~~ak~~~p 259 (334)
.+.+.+.|+++|+..+- +.+-+- +.++|+|++.-+. .....+..++.++++|+.+|
T Consensus 81 ~e~~~~~i~~vk~~~~l~vga~vg~~~~~~~~~~~lieaGvd~I~idt------------a~G~~~~~~~~I~~ik~~~p 148 (366)
T 4fo4_A 81 IEQQAAQVHQVKISGGLRVGAAVGAAPGNEERVKALVEAGVDVLLIDS------------SHGHSEGVLQRIRETRAAYP 148 (366)
T ss_dssp HHHHHHHHHHHHTTTSCCCEEECCSCTTCHHHHHHHHHTTCSEEEEEC------------SCTTSHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHhcCceeEEEEeccChhHHHHHHHHHhCCCCEEEEeC------------CCCCCHHHHHHHHHHHHhcC
Q ss_pred CcceEeeceEEecCCCHHHHHHHHHHHHHcCCcEEeec
Q 019890 260 AGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFG 297 (334)
Q Consensus 260 ~Gl~tkTgiMVGlGETdEE~~etl~~Lre~gvd~vtig 297 (334)
+ .-+|+|..-|.++ .+.+.+.|+|.|-+|
T Consensus 149 ~-----v~Vi~G~v~t~e~----A~~a~~aGAD~I~vG 177 (366)
T 4fo4_A 149 H-----LEIIGGNVATAEG----ARALIEAGVSAVKVG 177 (366)
T ss_dssp T-----CEEEEEEECSHHH----HHHHHHHTCSEEEEC
T ss_pred C-----CceEeeeeCCHHH----HHHHHHcCCCEEEEe
No 230
>3cny_A Inositol catabolism protein IOLE; xylose isomerase-like TIM barrel, structural genomics, joint for structural genomics, JCSG; 1.85A {Lactobacillus plantarum WCFS1}
Probab=21.77 E-value=1.8e+02 Score=25.24 Aligned_cols=23 Identities=4% Similarity=0.081 Sum_probs=18.3
Q ss_pred chhHHHHHHHHHHCCCcEEEEee
Q 019890 159 PDEPTNVAEAIASWGLDYVVITS 181 (334)
Q Consensus 159 ~~Ep~~~A~av~~~GlkeVVLTS 181 (334)
.+...+.++.++++|.++|++.+
T Consensus 89 ~~~~~~~i~~a~~lG~~~v~~~~ 111 (301)
T 3cny_A 89 SEAFEKHCQYLKAINAPVAVVSE 111 (301)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEE
T ss_pred HHHHHHHHHHHHHcCCCEEEecC
Confidence 45667777788899999998875
No 231
>1fob_A Beta-1,4-galactanase; B/A barrel, glycosyl hydrolase, family 53, CLAN GH-A; 1.80A {Aspergillus aculeatus} SCOP: c.1.8.3 PDB: 1fhl_A
Probab=21.68 E-value=4.7e+02 Score=24.03 Aligned_cols=21 Identities=19% Similarity=0.245 Sum_probs=18.1
Q ss_pred CCCchhHHHHHHHHHHCCCcE
Q 019890 156 PPDPDEPTNVAEAIASWGLDY 176 (334)
Q Consensus 156 ~ld~~Ep~~~A~av~~~Glke 176 (334)
.-+.+...++++.+++.|++=
T Consensus 56 ~~d~~~~~~~~~~ak~~Gl~v 76 (334)
T 1fob_A 56 SYDLDYNLELAKRVKAAGMSL 76 (334)
T ss_dssp TTCHHHHHHHHHHHHHTTCEE
T ss_pred ccCHHHHHHHHHHHHHCCCEE
Confidence 456889999999999999984
No 232
>3ktc_A Xylose isomerase; putative sugar isomerase, structural genomics, joint center structural genomics, JCSG; HET: MSE; 1.54A {Pectobacterium atrosepticum SCRI1043}
Probab=21.67 E-value=4.4e+02 Score=23.64 Aligned_cols=129 Identities=9% Similarity=0.016 Sum_probs=63.2
Q ss_pred hhHHHHHHHHHHCCCcEEEEeee-cCCCCC---C--chHHHHHHHHHHHHhhCCCCceeeeeccccc--cccccchhhHH
Q 019890 160 DEPTNVAEAIASWGLDYVVITSV-DRDDLA---D--QGSGHFAQTVRKLKELKPNMLIEALVAKSGL--NVFAHNIETVE 231 (334)
Q Consensus 160 ~Ep~~~A~av~~~GlkeVVLTSv-~rdDl~---d--~Ga~~fa~lIr~Ik~~~P~i~vE~Ll~~ag~--dv~~HnlETv~ 231 (334)
+...+.++..+++|.+.||+-++ +.-+.+ + ...+.+++.+++|.+...++.|-+-+..-.+ ..+-.+.+.+.
T Consensus 107 ~~~~~~i~~A~~LGa~~vv~~~g~~g~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~~i~lE~~p~~~~~~~~~~~~~~~~ 186 (333)
T 3ktc_A 107 ELMHESAGIVRELGANYVKVWPGQDGWDYPFQVSHKNLWKLAVDGMRDLAGANPDVKFAIEYKPREPRVKMTWDSAARTL 186 (333)
T ss_dssp HHHHHHHHHHHHHTCSEEEECCTTCEESSTTSSCHHHHHHHHHHHHHHHHHTCTTSEEEEECCSCSSSSEESSCSHHHHH
T ss_pred HHHHHHHHHHHHhCCCEEEECCCCCCcCCCCcCCHHHHHHHHHHHHHHHHHHhhcCCEEEEEecCCCCccccCCCHHHHH
Confidence 34556667778899999988655 111111 1 1234556666666655544322111111001 11122233333
Q ss_pred HHHHhhcC--------------CCCCHHHHHHHHHHHHHhCCCcceEee-------ceEEecCCCH-HHHHHHHHHHHHc
Q 019890 232 ELQSAVRD--------------HRANFKQSLDVLMMAKDYVPAGTLTKT-------SIMLGCGETP-DQVVSTMEKVRAA 289 (334)
Q Consensus 232 ~l~~~Vr~--------------r~~tye~sL~vL~~ak~~~p~Gl~tkT-------giMVGlGETd-EE~~etl~~Lre~ 289 (334)
++.+.+.+ .+.+..+.++.+.....+ .. +.++- +.++ |+-+ -++.+.++.|++.
T Consensus 187 ~ll~~v~~~~vgl~lD~~H~~~~g~~~~~~~~~~~~~~~i-~~-vH~~D~~~~~d~~~~~--G~G~~~d~~~i~~~L~~~ 262 (333)
T 3ktc_A 187 LGIEDIGLDNVGVLLDFGHALYGGESPADSAQLIIDRGRL-FG-MDVNDNLRGWDDDLVV--GTVHMTEIFEFFYVLKIN 262 (333)
T ss_dssp HHHHHHTCTTEEEEEEHHHHHHTTCCHHHHHHHHHHTTCE-EE-EEBCBCCSSSCCCBCT--TSSCHHHHHHHHHHHHHT
T ss_pred HHHHHcCCcceEEEEecCcHhhhcCCHHHHHHHHHhCCCE-EE-EEeCCCCCCCCCCcCC--CCCCHHHHHHHHHHHHHc
Confidence 34444331 245555555544322111 11 22322 2233 5555 6899999999999
Q ss_pred CCc
Q 019890 290 GVD 292 (334)
Q Consensus 290 gvd 292 (334)
|++
T Consensus 263 gy~ 265 (333)
T 3ktc_A 263 NWQ 265 (333)
T ss_dssp TCC
T ss_pred CCC
Confidence 997
No 233
>3zs7_A Pyridoxal kinase; transferase, sleeping sickness; HET: ATP; 2.00A {Trypanosoma brucei}
Probab=21.53 E-value=60 Score=29.77 Aligned_cols=28 Identities=21% Similarity=0.255 Sum_probs=23.3
Q ss_pred CchhHHHHHHHHHHCCCcEEEEeeecCC
Q 019890 158 DPDEPTNVAEAIASWGLDYVVITSVDRD 185 (334)
Q Consensus 158 d~~Ep~~~A~av~~~GlkeVVLTSv~rd 185 (334)
+.+++.+.++.+.++|.+.|+||++..+
T Consensus 163 ~~~~~~~aa~~L~~~G~~~Vvvt~g~~g 190 (300)
T 3zs7_A 163 DLSSAILAADWFHNCGVAHVIIKSFREQ 190 (300)
T ss_dssp SHHHHHHHHHHHHHHTCSEEEEEEEC--
T ss_pred CHHHHHHHHHHHHHhCCCEEEEecCcCC
Confidence 5678888899999999999999999753
No 234
>3dhu_A Alpha-amylase; structural genomics, hydrolase, glycosidase, PSI-2, protein structure initiative; 2.00A {Lactobacillus plantarum}
Probab=21.46 E-value=1.5e+02 Score=28.18 Aligned_cols=56 Identities=14% Similarity=0.223 Sum_probs=39.7
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEeeccCcCCCCCC--------Cccc-------ccCCHHHHHHHHHHHHHh
Q 019890 273 GETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRH--------MPVS-------EYITPEAFERYRALGMEM 328 (334)
Q Consensus 273 GETdEE~~etl~~Lre~gvd~vtigqYlrP~~~h--------~~v~-------~yv~P~~f~~~~~~a~~~ 328 (334)
|-+...+.+.|+.|+++||+.|-+.+...-...| ..+. +|=+.++|+.+-+.|.+.
T Consensus 26 ~G~~~~i~~~l~yl~~lG~~~i~l~Pi~~~~~~~~~~~~~~gY~~~dy~~i~~~~Gt~~~~~~lv~~~h~~ 96 (449)
T 3dhu_A 26 AGNFAGVTADLQRIKDLGTDILWLLPINPIGEVNRKGTLGSPYAIKDYRGINPEYGTLADFKALTDRAHEL 96 (449)
T ss_dssp SCSHHHHHTTHHHHHHHTCSEEEECCCSCBCSTTCCTTTCCTTSBSCTTSCCGGGCCHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHhHHHHHHcCCCEEEECCcccccccCCCCCCCCCcCcccccccCcccCCHHHHHHHHHHHHHC
Confidence 4588899999999999999999888654211111 2233 344778888888877665
No 235
>2h9a_B CO dehydrogenase/acetyl-COA synthase, iron- sulfur protein; heterodimer, beta-alpha-barrels, oxidoreductase; HET: B12; 1.90A {Carboxydothermus hydrogenoformans} PDB: 2ycl_B*
Probab=21.25 E-value=4.6e+02 Score=24.41 Aligned_cols=125 Identities=13% Similarity=0.196 Sum_probs=67.9
Q ss_pred hhHHHHHHHHHHCCCcEEEEeee-cCCCCCCchHHHHHHHHHHHHhhCCC--Cce-ee----e---ecccccccccc---
Q 019890 160 DEPTNVAEAIASWGLDYVVITSV-DRDDLADQGSGHFAQTVRKLKELKPN--MLI-EA----L---VAKSGLNVFAH--- 225 (334)
Q Consensus 160 ~Ep~~~A~av~~~GlkeVVLTSv-~rdDl~d~Ga~~fa~lIr~Ik~~~P~--i~v-E~----L---l~~ag~dv~~H--- 225 (334)
+.+.+.|+...+.|.+.|-|-+. ++.+-.+-..+...++|+.|++.. + ++| .. . +++++++..++
T Consensus 74 ~~~~~~A~~~v~~GAdiIDIg~~StrP~~~~vs~eee~~vV~~v~~~~-~vplsI~DT~~~~~~~~V~eaal~aga~~k~ 152 (310)
T 2h9a_B 74 NDPVAWAKKCVEYGADIVALRLVSAHPDGQNRSGAELAEVCKAVADAI-DVPLMIIGCGVEEKDAEIFPVIGEALSGRNC 152 (310)
T ss_dssp TCHHHHHHHHHHTTCSEEEEECGGGCTTTTCCCHHHHHHHHHHHHHHC-SSCEEEECCSCHHHHHHHHHHHHHHTTTSCC
T ss_pred HHHHHHHHHHHHcCCcEEEEeCccCCCCCCCCCHHHHHHHHHHHHHhC-CceEEEECCCCCCCCHHHHHHHHHhCCCCCC
Confidence 78899999999999999988663 333222233455567888888763 3 344 33 3 33333333332
Q ss_pred --c---hhhHHHHHHhhcC--------CCCCHHHHHHHHHHHHHhCCCcc---eEeeceEEe-cCCCHHHHHHHHHHHHH
Q 019890 226 --N---IETVEELQSAVRD--------HRANFKQSLDVLMMAKDYVPAGT---LTKTSIMLG-CGETPDQVVSTMEKVRA 288 (334)
Q Consensus 226 --n---lETv~~l~~~Vr~--------r~~tye~sL~vL~~ak~~~p~Gl---~tkTgiMVG-lGETdEE~~etl~~Lre 288 (334)
| -+..+.+.+-+.. ...+.+...+.++.+.+. |+ .+--+-.+| ||=+.++-.+.+..||.
T Consensus 153 iINdvs~~~~~~~~~~aa~~g~~vv~m~~~dv~~l~~~~~~a~~~---Gi~~e~IilDPg~g~~g~~~e~~~~~l~~ir~ 229 (310)
T 2h9a_B 153 LLSSATKDNYKPIVATCMVHGHSVVASAPLDINLSKQLNIMIMEM---NLAPNRIIMDPLIGALGYGIEYSYSIIERMRL 229 (310)
T ss_dssp EEEEECTTTHHHHHHHHHHHTCEEEEECSSCHHHHHHHHHHHHTT---TCCGGGEEEECCCCCTTTTHHHHHHHHHHHHH
T ss_pred EEEECCCCccHHHHHHHHHhCCCEEEEChhHHHHHHHHHHHHHHC---CCChhhEEEeCCCccccCchHhHHHHHHHHHH
Confidence 1 1112333322110 112445555566666654 44 233344456 48666666566666666
No 236
>3upl_A Oxidoreductase; rossmann fold, NADPH binding; 1.50A {Brucella melitensis biovar abortus 230ORGANISM_TAXID} PDB: 3upy_A*
Probab=21.15 E-value=1.9e+02 Score=28.57 Aligned_cols=63 Identities=24% Similarity=0.422 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHhCCCcceEeeceEEecCCCHHHHHHHHHHHHHcCCcEEeeccCcCCCCCCCcccccCCHHHHHH
Q 019890 246 QSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMPVSEYITPEAFER 320 (334)
Q Consensus 246 ~sL~vL~~ak~~~p~Gl~tkTgiMVGlGETdEE~~etl~~Lre~gvd~vtigqYlrP~~~h~~v~~yv~P~~f~~ 320 (334)
+--++++.+++. |+. ++++.|+...-+.+++++.+.+||..|-+|- + .+.|...+.+|+.+.+
T Consensus 146 eg~eL~~~A~e~---Gvv----l~~~~gdqp~~~~eLv~~a~~~G~~~v~~Gk---g--~~~~~~~~~t~~~~~~ 208 (446)
T 3upl_A 146 IGPYLKAQADKQ---GVI----YSLGAGDEPSSCMELIEFVSALGYEVVSAGK---G--KNNPLNFDATPDDYRQ 208 (446)
T ss_dssp HHHHHHHHHHHH---TCC----EEECTTSHHHHHHHHHHHHHHTTCEEEEEEE---E--ESSCCCTTCCHHHHHH
T ss_pred HHHHHHHHHHHh---CCe----eeecCCcchHHHHHHHHHHHhCCCeEEEecc---C--cCCcccCCCChhHHHH
Confidence 334666677775 443 5567798888899999999999999999992 2 2277777889977743
No 237
>4ab4_A Xenobiotic reductase B; oxidoreductase, OLD yellow enzyme; HET: FMN TNL EDO; 1.50A {Pseudomonas putida KT2440}
Probab=21.12 E-value=76 Score=30.33 Aligned_cols=50 Identities=10% Similarity=0.048 Sum_probs=33.1
Q ss_pred HHHHHHHHHhCCCc-ceEeece---EEec--CCCHHHHHHHHHHHHHcCCcEEeec
Q 019890 248 LDVLMMAKDYVPAG-TLTKTSI---MLGC--GETPDQVVSTMEKVRAAGVDVMTFG 297 (334)
Q Consensus 248 L~vL~~ak~~~p~G-l~tkTgi---MVGl--GETdEE~~etl~~Lre~gvd~vtig 297 (334)
+++++.+|+..+.. +.++-+. .-|+ +++.++..+.++.|.+.|+|.+++-
T Consensus 207 ~eiv~aVr~~vg~~~v~vRls~~~~~~g~~~~~~~~~~~~la~~l~~~Gvd~i~v~ 262 (362)
T 4ab4_A 207 LEVTDAAIEVWGAQRVGVHLAPRADAHDMGDADRAETFTYVARELGKRGIAFICSR 262 (362)
T ss_dssp HHHHHHHHHHHCGGGEEEEECTTCCSSSCCCTTHHHHHHHHHHHHHHTTCSEEEEE
T ss_pred HHHHHHHHHhcCCCceEEEeeccccccccCCCCcHHHHHHHHHHHHHhCCCEEEEC
Confidence 57777777765421 2233221 1133 2346789999999999999999985
No 238
>3gka_A N-ethylmaleimide reductase; decode biostructures, ssgcid, niaid, targetdb bupsa00093A, structural genomics; HET: FMN; 2.30A {Burkholderia pseudomallei} SCOP: c.1.4.0
Probab=21.09 E-value=78 Score=30.26 Aligned_cols=50 Identities=10% Similarity=0.010 Sum_probs=33.4
Q ss_pred HHHHHHHHHhCCCc-ceEeece---EEec--CCCHHHHHHHHHHHHHcCCcEEeec
Q 019890 248 LDVLMMAKDYVPAG-TLTKTSI---MLGC--GETPDQVVSTMEKVRAAGVDVMTFG 297 (334)
Q Consensus 248 L~vL~~ak~~~p~G-l~tkTgi---MVGl--GETdEE~~etl~~Lre~gvd~vtig 297 (334)
+++++.+|+..+.. +.++-+. .-|+ +++.++..+.++.|.+.|+|.+++-
T Consensus 215 ~evv~aVr~~vg~~~v~vRls~~~~~~g~~~~~~~~~~~~la~~l~~~Gvd~i~v~ 270 (361)
T 3gka_A 215 LEVVDAAIDVWSAARVGVHLAPRGDAHTMGDSDPAATFGHVARELGRRRIAFLFAR 270 (361)
T ss_dssp HHHHHHHHHHHCGGGEEEEECTTCCSSSCCCSCHHHHHHHHHHHHHHTTCSEEEEE
T ss_pred HHHHHHHHHHcCCCeEEEecccccccCCCCCCCcHHHHHHHHHHHHHcCCCEEEEC
Confidence 57777777765421 2233222 1133 3347889999999999999999985
No 239
>3h3e_A Uncharacterized protein TM1679; structural genomics, surface entropy reduction, ISFI, beta- lactamase superfamily, PSI-2; 2.75A {Thermotoga maritima}
Probab=20.96 E-value=1.9e+02 Score=26.24 Aligned_cols=48 Identities=10% Similarity=0.149 Sum_probs=36.0
Q ss_pred HHHHHHHHHHhCCCcceEeeceEEec---CCCHHHHHHHHHHHHHcCCcEEeec
Q 019890 247 SLDVLMMAKDYVPAGTLTKTSIMLGC---GETPDQVVSTMEKVRAAGVDVMTFG 297 (334)
Q Consensus 247 sL~vL~~ak~~~p~Gl~tkTgiMVGl---GETdEE~~etl~~Lre~gvd~vtig 297 (334)
-++++++|++.++. .+ -.+|=|| +-+++.+.++++.|++++++.+...
T Consensus 185 I~Niv~~a~~~~g~--~i-~~viGGfHL~~~~~~~l~~tl~~l~~~~~~~i~~~ 235 (267)
T 3h3e_A 185 IDNILLDIAETFNE--RI-KMVVGGFHLLKSSDDEIEKIVKAFNELGVETVVPC 235 (267)
T ss_dssp HHHHHHHHHTTCSS--CE-EEEEEECCCTTSCHHHHHHHHHHHHHTTCCEEEEE
T ss_pred HHHHHHHHHHHhCC--Cc-eEEEeccccCCCCHHHHHHHHHHHHhcCCCEEEEE
Confidence 36788888887542 11 3455666 6689999999999999999987665
No 240
>2nx9_A Oxaloacetate decarboxylase 2, subunit alpha; carboxyltransferase structure, B enzymes, Zn2+ binding site, TIM-barrel fold, lyase; 1.70A {Vibrio cholerae}
Probab=20.77 E-value=2e+02 Score=28.41 Aligned_cols=51 Identities=16% Similarity=0.186 Sum_probs=36.8
Q ss_pred CCchhHHHHHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhCCCCcee
Q 019890 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIE 212 (334)
Q Consensus 157 ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~P~i~vE 212 (334)
-+++...++++++.++|.+.|+|-=-. .-.-...+.++|++|++.. ++.++
T Consensus 155 ~~~e~~~~~a~~l~~~Gad~I~l~DT~----G~~~P~~v~~lv~~l~~~~-~~~i~ 205 (464)
T 2nx9_A 155 HNLQTWVDVAQQLAELGVDSIALKDMA----GILTPYAAEELVSTLKKQV-DVELH 205 (464)
T ss_dssp CCHHHHHHHHHHHHHTTCSEEEEEETT----SCCCHHHHHHHHHHHHHHC-CSCEE
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEcCCC----CCcCHHHHHHHHHHHHHhc-CCeEE
Confidence 378999999999999999999882111 1112467889999998876 44343
No 241
>2xvy_A Chelatase, putative; metal binding protein; HET: HEM; 1.70A {Desulfovibrio vulgaris} PDB: 2xvx_A* 2xvz_A*
Probab=20.76 E-value=3.8e+02 Score=23.50 Aligned_cols=32 Identities=13% Similarity=0.133 Sum_probs=26.2
Q ss_pred EEecCCCHHHHHHHHHHHHHcCCcEEeeccCc
Q 019890 269 MLGCGETPDQVVSTMEKVRAAGVDVMTFGQYM 300 (334)
Q Consensus 269 MVGlGETdEE~~etl~~Lre~gvd~vtigqYl 300 (334)
-+|+-|..-.+.++++.|.+.|+..|.+.+|+
T Consensus 179 ~~g~~e~~P~~~~~l~~l~~~G~~~v~v~P~~ 210 (269)
T 2xvy_A 179 LVGTVEGSPSFDNVMAELDVRKAKRVWLMPLM 210 (269)
T ss_dssp EEEESSSSSCHHHHHHHHHHHTCSEEEEEEES
T ss_pred EEEEcCCCCCHHHHHHHHHHCCCCEEEEECCc
Confidence 37774555669999999999999999998885
No 242
>2gou_A Oxidoreductase, FMN-binding; OLD yeallow enzyme, flavoenzyme; HET: BOG FMN PE4; 1.40A {Shewanella oneidensis} PDB: 2gq8_A* 2gq9_A* 2gqa_A*
Probab=20.53 E-value=90 Score=29.66 Aligned_cols=51 Identities=8% Similarity=0.023 Sum_probs=34.5
Q ss_pred HHHHHHHHHhCCCc-ceEeeceE---Ee--cCCCHHHHHHHHHHHHHcCCcEEeecc
Q 019890 248 LDVLMMAKDYVPAG-TLTKTSIM---LG--CGETPDQVVSTMEKVRAAGVDVMTFGQ 298 (334)
Q Consensus 248 L~vL~~ak~~~p~G-l~tkTgiM---VG--lGETdEE~~etl~~Lre~gvd~vtigq 298 (334)
+++++.+|+..+.. +.+|-+.- -| -|.+.++..+.++.|.+.|+|.|++..
T Consensus 215 ~eiv~avr~~vg~~pv~vris~~~~~~~~~~~~~~~~~~~~a~~l~~~G~d~i~v~~ 271 (365)
T 2gou_A 215 DEVVAALVDAIGAERVGVRLAPLTTLNGTVDADPILTYTAAAALLNKHRIVYLHIAE 271 (365)
T ss_dssp HHHHHHHHHHHCGGGEEEEECSSCCTTSCCCSSHHHHHHHHHHHHHHTTCSEEEEEC
T ss_pred HHHHHHHHHHcCCCcEEEEEccccccCCCCCCCCHHHHHHHHHHHHHcCCCEEEEeC
Confidence 57777777765321 22322221 11 256888999999999999999999975
No 243
>2zvr_A Uncharacterized protein TM_0416; hyperthermophIle, ketohexose 3-epimeras tagatose 3-epimerase, isomerase; 2.20A {Thermotoga maritima}
Probab=20.50 E-value=2.5e+02 Score=24.50 Aligned_cols=129 Identities=12% Similarity=0.153 Sum_probs=62.5
Q ss_pred hhHHHHHHHHHHCCCcEEEEe-eecCCCCC-CchHHHHHHHHHHHHhhCCCCceeeeeccc--cccccccchhhHHHHHH
Q 019890 160 DEPTNVAEAIASWGLDYVVIT-SVDRDDLA-DQGSGHFAQTVRKLKELKPNMLIEALVAKS--GLNVFAHNIETVEELQS 235 (334)
Q Consensus 160 ~Ep~~~A~av~~~GlkeVVLT-Sv~rdDl~-d~Ga~~fa~lIr~Ik~~~P~i~vE~Ll~~a--g~dv~~HnlETv~~l~~ 235 (334)
+...+.++.++++|.+.|+.. .+..++.. +...+.+++.++++.+.... |.+.+-.- ....+-.+.+...++..
T Consensus 113 ~~~~~~i~~A~~lG~~~v~~~~~g~~~~~~~~~~~~~~~~~l~~l~~~a~~--v~l~lEn~~~~~~~~~~~~~~~~~l~~ 190 (290)
T 2zvr_A 113 ERVVKHTEVAGMFGALVIIGLVRGRREGRSYEETEELFIESMKRLLELTEH--AKFVIEPLNRYETDFINTIDDALRILR 190 (290)
T ss_dssp HHHHHHHHHHHHHTCEEEESGGGCCCTTSCHHHHHHHHHHHHHHHHHHCSS--CCEEECCCCTTTCSSCCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCEEEecCCCCCCCcCHHHHHHHHHHHHHHHHHHhcc--CEEEEEeCCCcCccccCCHHHHHHHHH
Confidence 456677777788999998822 12211111 11224455566666555433 32221110 01112233444444554
Q ss_pred hhcC--------------CCCCHHHHHHHHHHHHHhCCCcceEeec--eEEecCCCHHHHHHHHHHHHHcCCc-EEee
Q 019890 236 AVRD--------------HRANFKQSLDVLMMAKDYVPAGTLTKTS--IMLGCGETPDQVVSTMEKVRAAGVD-VMTF 296 (334)
Q Consensus 236 ~Vr~--------------r~~tye~sL~vL~~ak~~~p~Gl~tkTg--iMVGlGETdEE~~etl~~Lre~gvd-~vti 296 (334)
.+.. .+.+..+ .++.+...... +.++-. ..+ |+-.-++.+.++.|++.|++ .+.+
T Consensus 191 ~~~~~~vgl~~D~~h~~~~g~d~~~---~l~~~~~~i~~-vHl~D~~r~~~--G~G~id~~~~~~~L~~~gy~g~i~l 262 (290)
T 2zvr_A 191 KINSNRVGILADTFHMNIEEVNIPE---SLKRAGEKLYH-FHVADSNRWAP--GCGHFDFRSVFNTLKEIGYNRYVSV 262 (290)
T ss_dssp HHCCTTEEEEEEHHHHHHHCSSHHH---HHHHHGGGEEE-EEECCTTSSST--TSSCCCHHHHHHHHHHTTCCSEEEE
T ss_pred HcCCCCEEEEEehhHhhhcCCCHHH---HHHHhhccEEE-EEEcCCCCCCC--CCcccCHHHHHHHHHHcCCCceEEE
Confidence 4431 1234433 33333333322 333321 223 55556788999999999998 5555
No 244
>3oa3_A Aldolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, pathogenic fungus; 1.60A {Coccidioides immitis}
Probab=20.39 E-value=5.2e+02 Score=23.98 Aligned_cols=74 Identities=11% Similarity=0.089 Sum_probs=51.2
Q ss_pred CCCHHHHHHHHHHHHHhCCCcceEeeceEEecCCCHHHHHHHHHHHHHcCCcEEeecc-CcCCCCCCCcccccCCHHHHH
Q 019890 241 RANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQ-YMRPSKRHMPVSEYITPEAFE 319 (334)
Q Consensus 241 ~~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGlGETdEE~~etl~~Lre~gvd~vtigq-YlrP~~~h~~v~~yv~P~~f~ 319 (334)
..+|+.-++-|+.+++..++ ..+|.=+..|+ -|++|+....+...++|.|.|-... |.. .=.+++..+
T Consensus 154 ~g~~~~v~~eI~~V~~a~~~-~~lKVIlEt~~-Lt~eei~~A~~ia~eaGADfVKTSTGf~~---------~GAT~edv~ 222 (288)
T 3oa3_A 154 EKRYTDVFQDIRAVRLAAKD-AILKVILETSQ-LTADEIIAGCVLSSLAGADYVKTSTGFNG---------PGASIENVS 222 (288)
T ss_dssp TTCHHHHHHHHHHHHHHTTT-SEEEEECCGGG-CCHHHHHHHHHHHHHTTCSEEECCCSSSS---------CCCCHHHHH
T ss_pred CCcHHHHHHHHHHHHHHhcC-CCceEEEECCC-CCHHHHHHHHHHHHHcCCCEEEcCCCCCC---------CCCCHHHHH
Confidence 36788888999999887654 34444444443 3789999999999999999886542 431 235666666
Q ss_pred HHHHHH
Q 019890 320 RYRALG 325 (334)
Q Consensus 320 ~~~~~a 325 (334)
.+++..
T Consensus 223 lmr~~v 228 (288)
T 3oa3_A 223 LMSAVC 228 (288)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666654
No 245
>2b7n_A Probable nicotinate-nucleotide pyrophosphorylase; quinolinate phosphoribosyltransferase, quinolinic acid, HELI pylori, transferase; HET: NTM; 2.30A {Helicobacter pylori} PDB: 2b7p_A* 2b7q_A*
Probab=20.23 E-value=1.5e+02 Score=26.96 Aligned_cols=51 Identities=24% Similarity=0.221 Sum_probs=35.2
Q ss_pred HHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhCCCCceeee----------eccccccccc
Q 019890 166 AEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEAL----------VAKSGLNVFA 224 (334)
Q Consensus 166 A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~P~i~vE~L----------l~~ag~dv~~ 224 (334)
++.+.+.|+++|.|-. .+.+.+.+.++.++...|++.+++. +.++|.|++.
T Consensus 195 ~~~A~~aGaD~I~ld~--------~~~~~l~~~v~~l~~~~~~~~i~AsGGI~~~ni~~~~~aGaD~i~ 255 (273)
T 2b7n_A 195 AKNAMNAGADIVMCDN--------LSVLETKEIAAYRDAHYPFVLLEASGNISLESINAYAKSGVDAIS 255 (273)
T ss_dssp HHHHHHHTCSEEEEET--------CCHHHHHHHHHHHHHHCTTCEEEEESSCCTTTHHHHHTTTCSEEE
T ss_pred HHHHHHcCCCEEEECC--------CCHHHHHHHHHHhhccCCCcEEEEECCCCHHHHHHHHHcCCcEEE
Confidence 4344457999988733 2456788888888877787777765 6667777655
No 246
>2dh2_A 4F2 cell-surface antigen heavy chain; TIM-barrel, glycosidase like, antiparallel beta-sheet, greek terminal domain, extracellular domain; 2.10A {Homo sapiens} PDB: 2dh3_A
Probab=20.20 E-value=95 Score=29.80 Aligned_cols=55 Identities=9% Similarity=0.174 Sum_probs=40.4
Q ss_pred CHHHHHHHHHHHHHcCCcEEeeccCcCCCCCCCcccc-------cCCHHHHHHHHHHHHHhh
Q 019890 275 TPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMPVSE-------YITPEAFERYRALGMEMV 329 (334)
Q Consensus 275 TdEE~~etl~~Lre~gvd~vtigqYlrP~~~h~~v~~-------yv~P~~f~~~~~~a~~~~ 329 (334)
+-.-+.+-|+.|+++||+.|-+.+...-...+.-+.. |=+++.|+.+-+.|.+.|
T Consensus 34 dl~gi~~~Ldyl~~LGv~~i~l~Pi~~~~~~~y~~~dy~~idp~~Gt~~d~~~lv~~ah~~G 95 (424)
T 2dh2_A 34 NLAGLKGRLDYLSSLKVKGLVLGPIHKNQKDDVAQTDLLQIDPNFGSKEDFDSLLQSAKKKS 95 (424)
T ss_dssp SHHHHHTTHHHHHHTTCSEEEECCCEEECTTCSTTEEEEEECGGGCCHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCCCCCCCCCCcccccccCccCCCHHHHHHHHHHHHHCC
Confidence 6677888999999999999999876532233444443 347788998888877653
No 247
>3o63_A Probable thiamine-phosphate pyrophosphorylase; thiamin biosynthesis, TIM barrel, transferase; 2.35A {Mycobacterium tuberculosis}
Probab=20.11 E-value=4.6e+02 Score=23.27 Aligned_cols=50 Identities=20% Similarity=0.236 Sum_probs=28.6
Q ss_pred ceEEec-CCCHHHHHHHHHHHHHcCCcEEeeccCc-CCCCCCCcccccCCHHHHHHHHH
Q 019890 267 SIMLGC-GETPDQVVSTMEKVRAAGVDVMTFGQYM-RPSKRHMPVSEYITPEAFERYRA 323 (334)
Q Consensus 267 giMVGl-GETdEE~~etl~~Lre~gvd~vtigqYl-rP~~~h~~v~~yv~P~~f~~~~~ 323 (334)
+.++|. --|.+|+.+. .+.|+|+|.+|+.. .+++... .-+..+.+..|.+
T Consensus 135 ~~~iG~S~ht~~Ea~~A----~~~GaDyI~vgpvf~T~tK~~~---~~~gl~~l~~~~~ 186 (243)
T 3o63_A 135 DTLIGRSTHDPDQVAAA----AAGDADYFCVGPCWPTPTKPGR---AAPGLGLVRVAAE 186 (243)
T ss_dssp TCEEEEEECSHHHHHHH----HHSSCSEEEECCSSCCCC--------CCCHHHHHHHHT
T ss_pred CCEEEEeCCCHHHHHHH----hhCCCCEEEEcCccCCCCCCCc---chhhHHHHHHHHH
Confidence 456777 5777776543 35899999999743 3333322 1234555555554
No 248
>2r14_A Morphinone reductase; H-tunnelling, flavoprotein, NADH, hydride transfer, oxidoreductase; HET: FMN TXD; 1.40A {Pseudomonas putida} PDB: 3gx9_A* 1gwj_A*
Probab=20.10 E-value=83 Score=30.12 Aligned_cols=51 Identities=12% Similarity=0.200 Sum_probs=35.2
Q ss_pred HHHHHHHHHhCCCc-ceEeece---EEec--CCCHHHHHHHHHHHHHcCCcEEeecc
Q 019890 248 LDVLMMAKDYVPAG-TLTKTSI---MLGC--GETPDQVVSTMEKVRAAGVDVMTFGQ 298 (334)
Q Consensus 248 L~vL~~ak~~~p~G-l~tkTgi---MVGl--GETdEE~~etl~~Lre~gvd~vtigq 298 (334)
+++++.+|+..+.. +.++-+. .-|+ |.+.++..+..+.|.+.|+|.|++..
T Consensus 220 ~eiv~aVr~avg~~~v~vrls~~~~~~~~~~~~~~~~~~~la~~le~~Gvd~i~v~~ 276 (377)
T 2r14_A 220 LEVVDAVAEVFGPERVGIRLTPFLELFGLTDDEPEAMAFYLAGELDRRGLAYLHFNE 276 (377)
T ss_dssp HHHHHHHHHHHCGGGEEEEECTTCCCTTCCCSCHHHHHHHHHHHHHHTTCSEEEEEC
T ss_pred HHHHHHHHHHcCCCcEEEEeccccccCCCCCCCCHHHHHHHHHHHHHcCCCEEEEeC
Confidence 57778888765421 3333221 1122 56789999999999999999999964
No 249
>3lmz_A Putative sugar isomerase; structural genomics, joint center structural genomics, JCSG, protein structure initiative, PS isomerase; HET: MSE CIT PGE; 1.44A {Parabacteroides distasonis}
Probab=20.03 E-value=2.1e+02 Score=24.56 Aligned_cols=65 Identities=9% Similarity=-0.023 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHhCCCcceEeeceEEecCCCHHHHHHHHHHHHHcCCcEEeeccCcCCCCCCCcccccCCHHHHHHHHHH
Q 019890 245 KQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMPVSEYITPEAFERYRAL 324 (334)
Q Consensus 245 e~sL~vL~~ak~~~p~Gl~tkTgiMVGlGETdEE~~etl~~Lre~gvd~vtigqYlrP~~~h~~v~~yv~P~~f~~~~~~ 324 (334)
++.-++.+.+++. |+.+.+ +-....++.+++.+.++..+++|+..|.+. |+ .+.+.++.++
T Consensus 61 ~~~~~~~~~l~~~---gl~i~~-~~~~~~~~~~~~~~~i~~A~~lGa~~v~~~----p~-----------~~~l~~l~~~ 121 (257)
T 3lmz_A 61 EQIRAFHDKCAAH---KVTGYA-VGPIYMKSEEEIDRAFDYAKRVGVKLIVGV----PN-----------YELLPYVDKK 121 (257)
T ss_dssp HHHHHHHHHHHHT---TCEEEE-EEEEEECSHHHHHHHHHHHHHHTCSEEEEE----EC-----------GGGHHHHHHH
T ss_pred HHHHHHHHHHHHc---CCeEEE-EeccccCCHHHHHHHHHHHHHhCCCEEEec----CC-----------HHHHHHHHHH
Confidence 3333444444443 665543 333345899999999999999999999874 33 2446666666
Q ss_pred HHHh
Q 019890 325 GMEM 328 (334)
Q Consensus 325 a~~~ 328 (334)
|.+.
T Consensus 122 a~~~ 125 (257)
T 3lmz_A 122 VKEY 125 (257)
T ss_dssp HHHH
T ss_pred HHHc
Confidence 6654
Done!