BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019891
(334 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2BRT|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Naringenin
Length = 355
Score = 110 bits (274), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 80/297 (26%), Positives = 140/297 (47%), Gaps = 22/297 (7%)
Query: 24 LPMIDLSADRSEVGKL-------IVRACEEYGFFKVINHGVPEGVIAEMEQESVNFFEKP 76
+P IDL S+ K+ + +A ++G +INHG+P ++ +++ FF
Sbjct: 46 VPTIDLKNIESDDEKIRENCIEELKKASLDWGVMHLINHGIPADLMERVKKAGEEFFSLS 105
Query: 77 LAEKQR----AGPANPFGYGCKNIGFNGDMGEVEFLLLHTNPLSIAQRSKSIS---NDPS 129
+ EK++ GYG K E E H L+ + + +S PS
Sbjct: 106 VEEKEKYANDQATGKIQGYGSKLANNASGQLEWEDYFFH---LAYPEEKRDLSIWPKTPS 162
Query: 130 KFGSAMNNYIRAVRELACEILDLMAEGLWVRDPSYFSKMIRDVENDSF-FRINHYPSCCN 188
+ A + Y + +R LA ++ ++ GL + +P K + +E +IN+YP C
Sbjct: 163 DYIEATSEYAKCLRLLATKVFKALSVGLGL-EPDRLEKEVGGLEELLLQMKINYYPKCPQ 221
Query: 189 NNTTRVGFGEHSDPQILTILRSNDVGGLQISPDHGVWIPVAPDPAAFCVNVGDVLQAMTN 248
+G H+D LT + N V GLQ+ + G W+ P + +++GD L+ ++N
Sbjct: 222 PELA-LGVEAHTDVSALTFILHNMVPGLQLFYE-GKWVTAKCVPDSIVMHIGDTLEILSN 279
Query: 249 GRFVSVRHRALSDSSQSRMSMAYFGAPALQARVSAP-PEMVTTNRPSLYRPFTWAEY 304
G++ S+ HR L + + R+S A F P V P PEMV+ P+ + P T+A++
Sbjct: 280 GKYKSILHRGLVNKEKVRISWAVFCEPPKDKIVLKPLPEMVSVESPAKFPPRTFAQH 336
>pdb|1GP5|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin
pdb|1GP6|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin (With 30 Min Exposure To O2)
Length = 356
Score = 110 bits (274), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 80/297 (26%), Positives = 140/297 (47%), Gaps = 22/297 (7%)
Query: 24 LPMIDLSADRSEVGKL-------IVRACEEYGFFKVINHGVPEGVIAEMEQESVNFFEKP 76
+P IDL S+ K+ + +A ++G +INHG+P ++ +++ FF
Sbjct: 47 VPTIDLKNIESDDEKIRENCIEELKKASLDWGVMHLINHGIPADLMERVKKAGEEFFSLS 106
Query: 77 LAEKQR----AGPANPFGYGCKNIGFNGDMGEVEFLLLHTNPLSIAQRSKSIS---NDPS 129
+ EK++ GYG K E E H L+ + + +S PS
Sbjct: 107 VEEKEKYANDQATGKIQGYGSKLANNASGQLEWEDYFFH---LAYPEEKRDLSIWPKTPS 163
Query: 130 KFGSAMNNYIRAVRELACEILDLMAEGLWVRDPSYFSKMIRDVENDSF-FRINHYPSCCN 188
+ A + Y + +R LA ++ ++ GL + +P K + +E +IN+YP C
Sbjct: 164 DYIEATSEYAKCLRLLATKVFKALSVGLGL-EPDRLEKEVGGLEELLLQMKINYYPKCPQ 222
Query: 189 NNTTRVGFGEHSDPQILTILRSNDVGGLQISPDHGVWIPVAPDPAAFCVNVGDVLQAMTN 248
+G H+D LT + N V GLQ+ + G W+ P + +++GD L+ ++N
Sbjct: 223 PELA-LGVEAHTDVSALTFILHNMVPGLQLFYE-GKWVTAKCVPDSIVMHIGDTLEILSN 280
Query: 249 GRFVSVRHRALSDSSQSRMSMAYFGAPALQARVSAP-PEMVTTNRPSLYRPFTWAEY 304
G++ S+ HR L + + R+S A F P V P PEMV+ P+ + P T+A++
Sbjct: 281 GKYKSILHRGLVNKEKVRISWAVFCEPPKDKIVLKPLPEMVSVESPAKFPPRTFAQH 337
>pdb|1W9Y|A Chain A, The Structure Of Acc Oxidase
pdb|1WA6|X Chain X, The Structure Of Acc Oxidase
Length = 319
Score = 106 bits (264), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 80/294 (27%), Positives = 143/294 (48%), Gaps = 23/294 (7%)
Query: 23 DLPMIDL----SADRSEVGKLIVRACEEYGFFKVINHGVPEGVIAEMEQESVNFFEKPLA 78
+ P+I L +R+ + I ACE +GFF+++NHG+P V +E+ + ++K
Sbjct: 3 NFPIISLDKVNGVERAATXEXIKDACENWGFFELVNHGIPREVXDTVEKXTKGHYKKCXE 62
Query: 79 EKQRAGPANPFGYGCKNIGFNGDMGEVEFLLLHTNPLSIAQRSKSISNDP---SKFGSAM 135
++ + A+ G + + D E F L H P+S +IS P ++
Sbjct: 63 QRFKELVASKALEGVQAEVTDXDW-ESTFFLKHL-PIS------NISEVPDLDEEYREVX 114
Query: 136 NNYIRAVRELACEILDLMAEGLWVRDPSYFSKMIRDVENDSF-FRINHYPSCCNNNTTRV 194
++ + + +LA E+LDL+ E L + + Y + +F ++++YP C + +
Sbjct: 115 RDFAKRLEKLAEELLDLLCENLGL-EKGYLKNAFYGSKGPNFGTKVSNYPPCPKPDLIK- 172
Query: 195 GFGEHSDPQ-ILTILRSNDVGGLQISPDHGVWIPVAPDPAAFCVNVGDVLQAMTNGRFVS 253
G H+D I+ + + + V GLQ+ D G WI V P + VN+GD L+ +TNG++ S
Sbjct: 173 GLRAHTDAGGIILLFQDDKVSGLQLLKD-GQWIDVPPXRHSIVVNLGDQLEVITNGKYKS 231
Query: 254 VRHRALSDSSQSRMSMAYFGAPALQARVSAPPEMV---TTNRPSLYRPFTWAEY 304
V HR ++ +R S+A F P A + P +V +Y F + +Y
Sbjct: 232 VXHRVIAQKDGARXSLASFYNPGSDAVIYPAPALVEKEAEENKQVYPKFVFDDY 285
>pdb|1GP4|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana
(Selenomethionine Substituted)
Length = 356
Score = 105 bits (263), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 79/297 (26%), Positives = 137/297 (46%), Gaps = 22/297 (7%)
Query: 24 LPMIDLSADRSEVGKL-------IVRACEEYGFFKVINHGVPEGVIAEMEQESVNFFEKP 76
+P IDL S+ K+ + +A ++G +INHG+P + +++ FF
Sbjct: 47 VPTIDLKNIESDDEKIRENCIEELKKASLDWGVXHLINHGIPADLXERVKKAGEEFFSLS 106
Query: 77 LAEKQR----AGPANPFGYGCKNIGFNGDMGEVEFLLLHTNPLSIAQRSKSIS---NDPS 129
+ EK++ GYG K E E H L+ + + +S PS
Sbjct: 107 VEEKEKYANDQATGKIQGYGSKLANNASGQLEWEDYFFH---LAYPEEKRDLSIWPKTPS 163
Query: 130 KFGSAMNNYIRAVRELACEILDLMAEGLWVRDPSYFSKMIRDVENDSF-FRINHYPSCCN 188
+ A + Y + +R LA ++ ++ GL + +P K + +E +IN+YP C
Sbjct: 164 DYIEATSEYAKCLRLLATKVFKALSVGLGL-EPDRLEKEVGGLEELLLQXKINYYPKCPQ 222
Query: 189 NNTTRVGFGEHSDPQILTILRSNDVGGLQISPDHGVWIPVAPDPAAFCVNVGDVLQAMTN 248
+G H+D LT + N V GLQ+ + G W+ P + ++GD L+ ++N
Sbjct: 223 PELA-LGVEAHTDVSALTFILHNXVPGLQLFYE-GKWVTAKCVPDSIVXHIGDTLEILSN 280
Query: 249 GRFVSVRHRALSDSSQSRMSMAYFGAPALQARVSAP-PEMVTTNRPSLYRPFTWAEY 304
G++ S+ HR L + + R+S A F P V P PE V+ P+ + P T+A++
Sbjct: 281 GKYKSILHRGLVNKEKVRISWAVFCEPPKDKIVLKPLPEXVSVESPAKFPPRTFAQH 337
>pdb|3OOX|A Chain A, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
pdb|3OOX|B Chain B, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
Length = 312
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 61/137 (44%), Gaps = 7/137 (5%)
Query: 164 YFSKMIRDVENDSFFRINHYPSCCNNNTTRVGFGEHSDPQILTILRSNDVGGLQISPDHG 223
+F ++D +S R+ HYP + T V G H D +T+L + GGL++ G
Sbjct: 159 FFKPTVQD--GNSVLRLLHYPPIPKD-ATGVRAGAHGDINTITLLLGAEEGGLEVLDRDG 215
Query: 224 VWIPVAPDPAAFCVNVGDVLQAMTNGRFVSVRHRALSDSSQS----RMSMAYFGAPALQA 279
W+P+ P P +N+GD L+ +TN S HR ++ + R S +F A
Sbjct: 216 QWLPINPPPGCLVINIGDXLERLTNNVLPSTVHRVVNPPPERRGVPRYSTPFFLHFASDY 275
Query: 280 RVSAPPEMVTTNRPSLY 296
+ VT P Y
Sbjct: 276 EIKTLQNCVTAENPDRY 292
>pdb|3ON7|A Chain A, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|B Chain B, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|C Chain C, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|D Chain D, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
Length = 280
Score = 61.2 bits (147), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 53/107 (49%), Gaps = 5/107 (4%)
Query: 174 NDSFFRINHYPSCCNNNTT-RVGFGEHSDPQILTILRSNDVGGLQISPDHGVWIPVAPDP 232
+ + RI HYP + + H D ++T+L + + GLQ+ G W+ V D
Sbjct: 148 HKTLLRILHYPPXTGDEEXGAIRAAAHEDINLITVLPTANEPGLQVKAKDGSWLDVPSDF 207
Query: 233 AAFCVNVGDVLQAMTNGRFVSVRHRAL----SDSSQSRMSMAYFGAP 275
+N+GD LQ ++G F S HR + +D ++SR+S+ F P
Sbjct: 208 GNIIINIGDXLQEASDGYFPSTSHRVINPEGTDKTKSRISLPLFLHP 254
>pdb|2BJS|A Chain A, Isopenicillin N Synthase C-Terminal Truncation Mutant
Length = 325
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 57/290 (19%), Positives = 116/290 (40%), Gaps = 52/290 (17%)
Query: 23 DLPMIDLS-------ADRSEVGKLIVRACEEYGFFKVINHGVPEGVIAEMEQE------- 68
++P ID+S A + V + I A + GFF +NHG+ +++ +E
Sbjct: 8 NVPKIDVSPLFGDDQAAKMRVAQQIDAASRDTGFFYAVNHGINVQRLSQKTKEFHMSITP 67
Query: 69 ------SVNFFEKPLAEKQRAGPANPFGYGCKNIGFNGDMGEVEFLLLHTN--PLSIAQR 120
++ + K ++ RAG + G F L+ N P +
Sbjct: 68 EEKWDLAIRAYNKEHQDQVRAG---------YYLSIPGKKAVESFCYLNPNFTPDHPRIQ 118
Query: 121 SKSISN------DPSK---FGSAMNNYIRAVRELACEILDLMAEGLWVRDPSYFSKMIRD 171
+K+ ++ D +K F Y V L+ +L A L ++ ++F++ +
Sbjct: 119 AKTPTHEVNVWPDETKHPGFQDFAEQYYWDVFGLSSALLKGYALAL-GKEENFFARHFKP 177
Query: 172 VENDSFFRINHYPSC---------CNNNTTRVGFGEHSDPQILTILRSNDVGGLQISPDH 222
+ + + YP + T++ F H D ++T+L ++V LQ+
Sbjct: 178 DDTLASVVLIRYPYLDPYPEAAIKTAADGTKLSFEWHEDVSLITVLYQSNVQNLQVETAA 237
Query: 223 GVWIPVAPDPAAFCVNVGDVLQAMTNGRFVSVRHRALSDSSQSRMSMAYF 272
G + + D + +N G + +TN + + HR +++ R S+ +F
Sbjct: 238 G-YQDIEADDTGYLINCGSYMAHLTNNYYKAPIHRVKWVNAE-RQSLPFF 285
>pdb|1IPS|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Manganese Complex)
pdb|1IPS|B Chain B, Isopenicillin N Synthase From Aspergillus Nidulans
(Manganese Complex)
pdb|1QJE|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Ip1 -
Fe Complex)
pdb|1QJF|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Monocyclic Sulfoxide - Fe Complex)
pdb|1QIQ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Acmc
Fe Complex)
pdb|1HB4|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB3|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB2|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB1|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Anaerobic Acov Fe Complex)
pdb|1ODM|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(anaerobic Ac-vinylglycine Fe Complex)
pdb|1ODN|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Oxygen-Exposed Product From Anaerobic Ac-Vinylglycine
Fe Complex)
pdb|1OBN|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-cysteinyl-aminobutyrate-fe-no Complex
pdb|1OC1|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-cysteinyl-aminobutyrate-fe Complex
pdb|1UZW|A Chain A, Isopenicillin N Synthase With
L-D-(A-Aminoadipoyl)-L-Cysteinyl-D-Isodehydrovaline
pdb|1W03|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Glycine-Fe
Complex
pdb|1W04|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-Cysteinyl-Glycine-Fe-No Complex
pdb|1W05|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Alanine-Fe
Complex
pdb|1W06|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Alanine-Fe
No Complex
pdb|2BU9|A Chain A, Isopenicillin N Synthase Complexed With L-Aminoadipoyl-L-
Cysteinyl-L-Hexafluorovaline
pdb|1W3V|A Chain A, Isopenicillin N Synthase
D-(L-A-Aminoadipoyl)-(3r)-Methyl-L- Cysteine
D-A-Hydroxyisovaleryl Ester Complex (Anaerobic)
pdb|1W3X|A Chain A, Isopenicillin N Synthase
D-(L-A-Aminoadipoyl)-(3r)-Methyl-L- Cysteine
D-A-Hydroxyisovaleryl Ester Complex (Oxygen Exposed 5
Minutes 20 Bar)
pdb|2IVI|B Chain B, Isopenicillin N Synthase From Aspergillus Nidulans
(anaerobic Ac-methyl-cyclopropylglycine Fe Complex)
pdb|2IVJ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Anaerobic Ac-Cyclopropylglycine Fe Complex)
pdb|1BK0|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Acv-Fe
Complex)
pdb|1BLZ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Acv-Fe- No Complex)
pdb|2JB4|A Chain A, Isopenicillin N Synthase With A 2-Thiabicycloheptan-6-One
Product Analogue
pdb|2VAU|A Chain A, Isopenicillin N Synthase With Substrate Analogue Acomp (
Unexposed)
pdb|2VBB|A Chain A, Isopenicillin N Synthase With Substrate Analogue Acomp (
35minutes Oxygen Exposure)
pdb|2VBD|A Chain A, Isopenicillin N Synthase With Substrate Analogue L,l,l-
Acomp (unexposed)
pdb|2VBP|A Chain A, Isopenicillin N Synthase With Substrate Analogue
L,L,L-Acab (Unexposed)
pdb|2VCM|A Chain A, Isopenicillin N Synthase With Substrate Analogue Asmcov
pdb|2VE1|A Chain A, Isopenicillin N Synthase With Substrate Analogue Asmcov (
Oxygen Exposed 1min 20bar)
pdb|2WO7|A Chain A, Isopenicillin N Synthase With Substrate Analogue L,L,D-
Acd2ab (Unexposed)
pdb|2Y6F|A Chain A, Isopenicillin N Synthase With
Ac-D-S-Methyl-3r-Methylcysteine
pdb|2Y60|A Chain A, Isopenicillin N Synthase With Ac-D-Methionine
pdb|2Y86|A Chain A, Isopenicillin N Synthase With Ac-O-Methyl-D-Threonine
pdb|3ZKU|A Chain A, Isopenicillin N Synthase With Substrate Analogue Ahcv
Length = 331
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 57/290 (19%), Positives = 116/290 (40%), Gaps = 52/290 (17%)
Query: 23 DLPMIDLS-------ADRSEVGKLIVRACEEYGFFKVINHGVPEGVIAEMEQE------- 68
++P ID+S A + V + I A + GFF +NHG+ +++ +E
Sbjct: 8 NVPKIDVSPLFGDDQAAKMRVAQQIDAASRDTGFFYAVNHGINVQRLSQKTKEFHMSITP 67
Query: 69 ------SVNFFEKPLAEKQRAGPANPFGYGCKNIGFNGDMGEVEFLLLHTN--PLSIAQR 120
++ + K ++ RAG + G F L+ N P +
Sbjct: 68 EEKWDLAIRAYNKEHQDQVRAG---------YYLSIPGKKAVESFCYLNPNFTPDHPRIQ 118
Query: 121 SKSISN------DPSK---FGSAMNNYIRAVRELACEILDLMAEGLWVRDPSYFSKMIRD 171
+K+ ++ D +K F Y V L+ +L A L ++ ++F++ +
Sbjct: 119 AKTPTHEVNVWPDETKHPGFQDFAEQYYWDVFGLSSALLKGYALAL-GKEENFFARHFKP 177
Query: 172 VENDSFFRINHYPSC---------CNNNTTRVGFGEHSDPQILTILRSNDVGGLQISPDH 222
+ + + YP + T++ F H D ++T+L ++V LQ+
Sbjct: 178 DDTLASVVLIRYPYLDPYPEAAIKTAADGTKLSFEWHEDVSLITVLYQSNVQNLQVETAA 237
Query: 223 GVWIPVAPDPAAFCVNVGDVLQAMTNGRFVSVRHRALSDSSQSRMSMAYF 272
G + + D + +N G + +TN + + HR +++ R S+ +F
Sbjct: 238 G-YQDIEADDTGYLINCGSYMAHLTNNYYKAPIHRVKWVNAE-RQSLPFF 285
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,249,821
Number of Sequences: 62578
Number of extensions: 420726
Number of successful extensions: 744
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 727
Number of HSP's gapped (non-prelim): 12
length of query: 334
length of database: 14,973,337
effective HSP length: 99
effective length of query: 235
effective length of database: 8,778,115
effective search space: 2062857025
effective search space used: 2062857025
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)