BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 019892
         (334 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3IYP|B Chain B, The Interaction Of Decay-Accelerating Factor With
           Echovirus 7
 pdb|2X5I|C Chain C, Crystal Structure Echovirus 7
          Length = 238

 Score = 30.0 bits (66), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 5/39 (12%)

Query: 241 QILAFFLRPSKDSKFRR-----FWNWYHHWFGRLALFFA 274
           +I AF ++P  +S F+R       N+Y HW G + L F 
Sbjct: 81  KIFAFQMQPGLESVFKRTLMGEILNYYAHWSGSIKLTFT 119


>pdb|1M11|3 Chain 3, Structural Model Of Human Decay-accelerating Factor Bound
           To Echovirus 7 From Cryo-electron Microscopy
          Length = 238

 Score = 30.0 bits (66), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 5/39 (12%)

Query: 241 QILAFFLRPSKDSKFRR-----FWNWYHHWFGRLALFFA 274
           +I AF ++P  +S F+R       N+Y HW G + L F 
Sbjct: 81  KIFAFQMQPGLESVFKRTLMGEILNYYAHWSGSIKLTFT 119


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.328    0.142    0.459 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,617,734
Number of Sequences: 62578
Number of extensions: 363856
Number of successful extensions: 844
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 843
Number of HSP's gapped (non-prelim): 4
length of query: 334
length of database: 14,973,337
effective HSP length: 99
effective length of query: 235
effective length of database: 8,778,115
effective search space: 2062857025
effective search space used: 2062857025
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 52 (24.6 bits)