Query 019892
Match_columns 334
No_of_seqs 171 out of 1097
Neff 7.9
Searched_HMMs 46136
Date Fri Mar 29 05:22:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019892.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019892hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd08760 Cyt_b561_FRRS1_like Eu 100.0 5.4E-33 1.2E-37 244.4 16.5 159 151-311 31-191 (191)
2 KOG4293 Predicted membrane pro 100.0 2.5E-30 5.5E-35 250.5 7.6 310 5-318 44-376 (403)
3 smart00665 B561 Cytochrome b-5 99.9 1.5E-26 3.2E-31 190.9 9.2 124 158-282 1-129 (129)
4 PF03188 Cytochrom_B561: Eukar 99.9 5.1E-24 1.1E-28 177.4 10.7 127 158-285 1-133 (137)
5 cd08766 Cyt_b561_ACYB-1_like P 99.9 2.3E-23 5E-28 173.4 9.9 134 151-285 3-139 (144)
6 cd08554 Cyt_b561 Eukaryotic cy 99.9 2.5E-23 5.3E-28 172.1 9.6 126 156-282 2-131 (131)
7 PLN02351 cytochromes b561 fami 99.9 2.5E-22 5.3E-27 178.2 12.8 132 152-285 46-181 (242)
8 cd08761 Cyt_b561_CYB561D2_like 99.9 7E-22 1.5E-26 172.6 11.0 132 152-284 17-157 (183)
9 cd08764 Cyt_b561_CG1275_like N 99.9 2.7E-21 5.9E-26 170.5 11.6 133 152-284 20-157 (214)
10 smart00664 DoH Possible catech 99.9 3.1E-20 6.7E-25 156.6 17.3 135 5-144 1-146 (148)
11 PLN02810 carbon-monoxide oxyge 99.8 1.2E-20 2.6E-25 166.1 12.9 134 151-285 42-178 (231)
12 PLN02680 carbon-monoxide oxyge 99.8 1.5E-20 3.3E-25 166.7 13.4 133 152-285 43-178 (232)
13 cd08762 Cyt_b561_CYBASC3 Verte 99.8 5.2E-21 1.1E-25 163.1 10.0 131 154-285 33-169 (179)
14 cd08765 Cyt_b561_CYBRD1 Verteb 99.8 7.2E-21 1.6E-25 159.2 9.8 132 153-285 9-146 (153)
15 cd08763 Cyt_b561_CYB561 Verteb 99.8 1.9E-20 4.1E-25 155.7 10.4 131 154-285 5-139 (143)
16 PF03351 DOMON: DOMON domain; 99.8 2.3E-18 4.9E-23 140.6 14.2 110 5-119 2-124 (124)
17 KOG1619 Cytochrome b [Energy p 99.8 1.4E-18 3E-23 152.7 10.6 134 152-286 51-188 (245)
18 cd00241 CDH_cytochrome Cellobi 99.4 6.8E-12 1.5E-16 108.6 15.2 123 18-146 40-176 (184)
19 PF10348 DUF2427: Domain of un 99.3 4E-12 8.6E-17 100.5 7.9 91 150-248 12-102 (105)
20 KOG3568 Dopamine beta-monooxyg 98.9 1.1E-08 2.3E-13 98.0 9.2 110 5-121 42-160 (603)
21 PF04526 DUF568: Protein of un 98.3 1.5E-05 3.3E-10 62.4 10.7 93 43-141 1-101 (101)
22 PF13301 DUF4079: Protein of u 97.2 0.0034 7.4E-08 54.2 10.0 91 190-285 81-172 (175)
23 cd08554 Cyt_b561 Eukaryotic cy 96.9 0.0081 1.7E-07 49.3 9.1 94 189-285 2-95 (131)
24 PF03188 Cytochrom_B561: Eukar 96.8 0.015 3.2E-07 47.9 10.3 93 191-286 1-95 (137)
25 cd08760 Cyt_b561_FRRS1_like Eu 96.6 0.022 4.8E-07 49.8 10.6 127 135-288 3-130 (191)
26 cd08763 Cyt_b561_CYB561 Verteb 96.6 0.032 7E-07 46.6 10.8 95 188-285 6-100 (143)
27 cd08764 Cyt_b561_CG1275_like N 96.5 0.037 8.1E-07 49.3 10.9 97 187-284 22-118 (214)
28 smart00665 B561 Cytochrome b-5 96.3 0.022 4.8E-07 46.6 8.2 95 191-288 1-96 (129)
29 cd08761 Cyt_b561_CYB561D2_like 96.2 0.02 4.3E-07 49.9 7.8 97 186-284 18-116 (183)
30 PLN02680 carbon-monoxide oxyge 96.1 0.12 2.6E-06 46.6 12.0 93 188-284 46-138 (232)
31 cd08766 Cyt_b561_ACYB-1_like P 95.7 0.15 3.2E-06 42.7 10.4 94 187-284 6-99 (144)
32 PF00033 Cytochrom_B_N: Cytoch 95.0 0.082 1.8E-06 45.4 6.8 95 190-284 10-127 (188)
33 cd08762 Cyt_b561_CYBASC3 Verte 94.7 1.1 2.5E-05 38.7 13.0 97 187-285 33-130 (179)
34 COG2717 Predicted membrane pro 94.5 0.36 7.9E-06 42.7 9.7 138 162-307 49-190 (209)
35 PLN02351 cytochromes b561 fami 94.4 0.64 1.4E-05 42.1 11.2 93 188-285 50-142 (242)
36 cd08765 Cyt_b561_CYBRD1 Verteb 94.1 0.83 1.8E-05 38.6 10.7 96 188-285 11-107 (153)
37 PF10348 DUF2427: Domain of un 93.7 0.57 1.2E-05 37.0 8.4 87 186-284 15-102 (105)
38 PLN02810 carbon-monoxide oxyge 93.4 1 2.3E-05 40.4 10.5 94 187-284 45-138 (231)
39 KOG1619 Cytochrome b [Energy p 91.5 1.6 3.4E-05 39.4 9.2 94 187-285 53-148 (245)
40 PF10067 DUF2306: Predicted me 91.3 0.75 1.6E-05 36.1 6.3 32 256-287 2-33 (103)
41 PF13172 PepSY_TM_1: PepSY-ass 90.8 0.28 6.1E-06 30.3 2.8 31 256-286 2-32 (34)
42 PF13301 DUF4079: Protein of u 90.0 3.5 7.5E-05 35.7 9.7 62 223-289 79-143 (175)
43 PRK11513 cytochrome b561; Prov 89.4 5 0.00011 34.6 10.4 61 223-283 41-103 (176)
44 COG5658 Predicted integral mem 88.4 3.8 8.2E-05 36.2 8.9 87 230-316 4-102 (204)
45 PF01794 Ferric_reduct: Ferric 87.6 2.1 4.5E-05 34.0 6.5 50 230-280 1-54 (125)
46 TIGR02125 CytB-hydogenase Ni/F 87.0 7.5 0.00016 34.1 10.3 27 260-286 113-139 (211)
47 PF04238 DUF420: Protein of un 86.2 10 0.00022 31.3 9.8 41 158-205 7-47 (133)
48 PF00033 Cytochrom_B_N: Cytoch 85.9 3.7 8E-05 35.0 7.6 127 156-283 9-173 (188)
49 PF13789 DUF4181: Domain of un 84.7 5.5 0.00012 31.6 7.4 65 257-323 25-89 (110)
50 PF13706 PepSY_TM_3: PepSY-ass 84.5 1.2 2.5E-05 28.1 2.7 29 256-284 1-29 (37)
51 PF01292 Ni_hydr_CYTB: Prokary 83.8 7.5 0.00016 33.0 8.5 94 190-286 8-124 (182)
52 COG3038 CybB Cytochrome B561 [ 82.7 4.4 9.5E-05 35.2 6.5 61 189-251 13-74 (181)
53 TIGR01583 formate-DH-gamm form 80.3 28 0.00061 30.6 11.0 30 256-285 101-130 (204)
54 TIGR01191 ccmC heme exporter p 80.2 20 0.00042 31.3 9.7 66 150-215 7-72 (184)
55 PF13630 SdpI: SdpI/YhfL prote 80.0 2.2 4.7E-05 31.1 3.2 34 254-287 18-51 (76)
56 PF01292 Ni_hydr_CYTB: Prokary 79.7 17 0.00037 30.8 9.3 125 156-281 7-165 (182)
57 PF13703 PepSY_TM_2: PepSY-ass 77.9 8.6 0.00019 29.0 6.0 31 254-285 56-86 (88)
58 COG4858 Uncharacterized membra 76.9 33 0.00071 29.9 9.7 88 182-282 89-184 (226)
59 PRK10171 hydrogenase 1 b-type 75.6 58 0.0013 29.3 11.8 27 260-286 126-152 (235)
60 PRK05419 putative sulfite oxid 74.2 47 0.001 29.4 10.6 47 258-308 145-191 (205)
61 PRK05771 V-type ATP synthase s 71.7 34 0.00075 35.7 10.6 48 236-283 451-499 (646)
62 PF10951 DUF2776: Protein of u 70.6 12 0.00026 34.8 6.0 86 193-285 155-244 (347)
63 PF10856 DUF2678: Protein of u 69.9 14 0.00029 29.6 5.4 57 223-285 27-83 (118)
64 PF10856 DUF2678: Protein of u 69.0 6.3 0.00014 31.5 3.3 64 260-329 28-92 (118)
65 PRK10179 formate dehydrogenase 66.9 20 0.00043 32.0 6.6 30 256-285 106-135 (217)
66 COG3247 HdeD Uncharacterized c 66.8 88 0.0019 27.3 11.3 72 198-289 81-153 (185)
67 PF03929 PepSY_TM: PepSY-assoc 65.3 11 0.00025 22.0 3.1 24 260-283 2-25 (27)
68 PLN02631 ferric-chelate reduct 65.0 25 0.00053 37.2 7.8 63 222-285 187-254 (699)
69 PF09600 Cyd_oper_YbgE: Cyd op 64.8 16 0.00034 27.5 4.7 52 222-278 27-80 (82)
70 TIGR02112 cyd_oper_ybgE cyd op 64.7 15 0.00034 28.2 4.7 50 222-276 38-89 (93)
71 PF01102 Glycophorin_A: Glycop 64.1 9.7 0.00021 30.9 3.7 26 293-320 69-94 (122)
72 PRK10588 hypothetical protein; 62.8 19 0.00042 27.9 4.9 75 195-276 17-93 (97)
73 COG3038 CybB Cytochrome B561 [ 61.9 75 0.0016 27.6 9.0 62 226-287 11-74 (181)
74 KOG2082 K+/Cl- cotransporter K 60.0 42 0.00091 35.6 8.1 23 252-274 596-618 (1075)
75 CHL00070 petB cytochrome b6 59.0 43 0.00093 29.9 7.2 86 200-290 45-144 (215)
76 PRK03735 cytochrome b6; Provis 58.6 32 0.0007 30.9 6.4 86 200-290 53-152 (223)
77 PLN02844 oxidoreductase/ferric 58.5 36 0.00078 36.1 7.7 24 222-245 190-213 (722)
78 PRK10639 formate dehydrogenase 57.5 49 0.0011 29.2 7.4 30 256-285 104-133 (211)
79 PRK10209 acid-resistance membr 55.4 96 0.0021 27.0 8.8 75 228-313 51-125 (190)
80 PF13706 PepSY_TM_3: PepSY-ass 55.3 12 0.00025 23.5 2.2 24 223-246 4-27 (37)
81 TIGR03813 put_Glu_GABA_T putat 53.1 1.1E+02 0.0023 30.5 9.8 30 255-284 390-419 (474)
82 PF01654 Bac_Ubq_Cox: Bacteria 53.0 1.2E+02 0.0027 30.1 10.0 155 156-321 10-206 (436)
83 PF10129 OpgC_C: OpgC protein; 52.1 1.2E+02 0.0026 29.3 9.6 54 157-211 186-239 (358)
84 cd00284 Cytochrome_b_N Cytochr 51.5 65 0.0014 28.4 7.1 87 199-290 33-133 (200)
85 KOG1608 Protein transporter of 51.4 93 0.002 29.2 8.1 59 229-287 217-281 (374)
86 PF03729 DUF308: Short repeat 50.5 25 0.00054 24.6 3.6 20 264-283 26-45 (72)
87 PF08507 COPI_assoc: COPI asso 49.7 1.3E+02 0.0029 24.5 8.3 53 255-313 57-109 (136)
88 PF08114 PMP1_2: ATPase proteo 49.3 21 0.00045 23.0 2.5 14 310-323 29-42 (43)
89 PF11377 DUF3180: Protein of u 49.2 1E+02 0.0023 25.4 7.6 26 290-315 30-55 (138)
90 PF10361 DUF2434: Protein of u 49.2 1.3E+02 0.0028 28.1 8.8 63 223-285 42-112 (296)
91 PF02009 Rifin_STEVOR: Rifin/s 47.1 19 0.00042 33.8 3.2 11 311-321 276-286 (299)
92 MTH00086 CYTB cytochrome b; Pr 46.3 94 0.002 30.0 7.8 84 200-290 31-128 (355)
93 PF14358 DUF4405: Domain of un 45.7 58 0.0013 22.7 4.9 47 232-278 7-60 (64)
94 PRK03735 cytochrome b6; Provis 45.6 51 0.0011 29.6 5.6 92 156-251 41-149 (223)
95 PF14358 DUF4405: Domain of un 45.0 58 0.0012 22.8 4.7 41 161-201 7-54 (64)
96 TIGR00353 nrfE c-type cytochro 44.4 3.6E+02 0.0078 27.9 12.1 63 152-214 113-177 (576)
97 MTH00033 CYTB cytochrome b; Pr 44.4 1E+02 0.0022 30.1 7.8 84 200-290 39-136 (383)
98 COG3790 Predicted membrane pro 44.1 62 0.0013 24.7 4.9 30 222-251 42-72 (97)
99 PRK11281 hypothetical protein; 43.3 1.7E+02 0.0037 32.8 10.1 12 228-239 650-661 (1113)
100 CHL00070 petB cytochrome b6 43.2 65 0.0014 28.8 5.8 92 156-251 33-141 (215)
101 COG4657 RnfA Predicted NADH:ub 43.2 69 0.0015 27.3 5.5 99 225-333 70-172 (193)
102 PF15176 LRR19-TM: Leucine-ric 42.6 67 0.0015 25.0 5.0 40 288-327 14-58 (102)
103 PF02628 COX15-CtaA: Cytochrom 42.3 1.4E+02 0.003 27.8 8.3 90 187-284 66-155 (302)
104 PF05568 ASFV_J13L: African sw 42.3 23 0.00049 29.5 2.5 29 294-322 31-59 (189)
105 PF02508 Rnf-Nqr: Rnf-Nqr subu 41.8 2.4E+02 0.0052 24.6 9.4 23 160-182 38-60 (190)
106 PF12811 BaxI_1: Bax inhibitor 41.8 1.7E+02 0.0037 27.2 8.4 54 261-317 209-270 (274)
107 PRK15006 thiosulfate reductase 41.7 2E+02 0.0043 26.4 9.0 94 191-285 76-203 (261)
108 PRK05151 electron transport co 41.5 1.8E+02 0.0038 25.6 8.1 98 226-333 71-172 (193)
109 PRK10929 putative mechanosensi 41.4 1.7E+02 0.0036 32.9 9.6 15 228-242 629-643 (1109)
110 PF02322 Cyto_ox_2: Cytochrome 41.0 3.2E+02 0.007 25.9 11.1 54 225-278 157-210 (328)
111 PRK15097 cytochrome d terminal 40.8 4.1E+02 0.009 27.1 12.7 158 157-320 17-211 (522)
112 PRK05419 putative sulfite oxid 40.4 1.5E+02 0.0033 26.1 7.7 54 223-279 40-93 (205)
113 PF10966 DUF2768: Protein of u 40.4 1.1E+02 0.0025 21.3 5.4 45 162-211 6-51 (58)
114 MTH00131 CYTB cytochrome b; Pr 40.4 1E+02 0.0023 30.0 7.2 84 200-290 42-139 (380)
115 COG2717 Predicted membrane pro 39.9 36 0.00078 30.3 3.6 44 153-196 110-154 (209)
116 PRK15035 cytochrome bd-II oxid 39.5 4.3E+02 0.0094 26.9 12.5 159 157-321 17-212 (514)
117 TIGR01943 rnfA electron transp 39.4 2.6E+02 0.0057 24.5 8.8 97 227-333 71-171 (190)
118 COG4146 Predicted symporter [G 39.4 81 0.0018 30.8 6.0 49 238-286 472-526 (571)
119 MTH00034 CYTB cytochrome b; Va 39.0 1.3E+02 0.0028 29.3 7.6 84 200-290 42-139 (379)
120 PRK10369 heme lyase subunit Nr 38.9 4.6E+02 0.01 27.1 12.2 63 152-214 167-231 (571)
121 PRK15049 L-asparagine permease 38.9 2.7E+02 0.0058 28.0 10.3 22 256-277 415-436 (499)
122 PF09990 DUF2231: Predicted me 38.6 99 0.0021 23.8 5.6 48 195-242 8-58 (104)
123 MTH00016 CYTB cytochrome b; Va 38.0 1.4E+02 0.003 29.1 7.7 84 200-290 43-140 (378)
124 MTH00046 CYTB cytochrome b; Va 37.9 1.1E+02 0.0024 29.5 6.9 83 201-290 34-130 (355)
125 MTH00145 CYTB cytochrome b; Pr 37.7 1.6E+02 0.0035 28.7 8.0 84 200-290 43-140 (379)
126 PLN02292 ferric-chelate reduct 37.5 81 0.0017 33.4 6.3 62 222-283 204-269 (702)
127 cd01663 Cyt_c_Oxidase_I Cytoch 37.5 4.5E+02 0.0097 26.6 12.0 58 152-209 45-109 (488)
128 PF15048 OSTbeta: Organic solu 37.4 75 0.0016 25.8 4.7 37 287-323 31-67 (125)
129 PF15183 MRAP: Melanocortin-2 37.1 80 0.0017 23.7 4.4 34 299-333 47-80 (90)
130 TIGR03145 cyt_nit_nrfE cytochr 37.0 5E+02 0.011 27.3 11.8 63 152-214 165-229 (628)
131 PF03729 DUF308: Short repeat 37.0 63 0.0014 22.5 4.0 67 199-276 3-69 (72)
132 MTH00100 CYTB cytochrome b; Pr 36.5 1.6E+02 0.0035 28.7 7.9 84 200-290 42-139 (379)
133 PF05393 Hum_adeno_E3A: Human 36.2 52 0.0011 25.0 3.4 13 311-323 51-63 (94)
134 PF06570 DUF1129: Protein of u 36.1 3E+02 0.0065 24.1 10.8 9 311-319 193-201 (206)
135 PF09323 DUF1980: Domain of un 35.8 1.9E+02 0.004 24.9 7.5 22 230-251 72-93 (182)
136 PTZ00127 cytochrome c oxidase 35.8 4.4E+02 0.0094 25.9 11.1 61 225-286 219-279 (403)
137 PRK13673 hypothetical protein; 35.7 2.3E+02 0.0051 22.8 7.4 24 190-213 32-55 (118)
138 cd01661 cbb3_Oxidase_I Cytochr 35.7 4.7E+02 0.01 26.4 11.3 60 152-211 86-150 (493)
139 PF13703 PepSY_TM_2: PepSY-ass 35.6 67 0.0014 24.0 4.1 25 223-247 60-84 (88)
140 TIGR02901 QoxD cytochrome aa3 35.4 2.1E+02 0.0045 22.1 7.0 71 191-273 8-81 (94)
141 PF05545 FixQ: Cbb3-type cytoc 35.3 58 0.0013 21.6 3.3 24 296-321 12-35 (49)
142 PF06609 TRI12: Fungal trichot 35.2 1.9E+02 0.0042 30.0 8.6 28 265-292 241-269 (599)
143 MTH00156 CYTB cytochrome b; Pr 35.0 1.3E+02 0.0028 29.1 6.9 84 200-290 32-129 (356)
144 PRK11513 cytochrome b561; Prov 34.2 85 0.0018 26.9 5.0 55 232-286 14-68 (176)
145 PF06341 DUF1056: Protein of u 33.4 1.6E+02 0.0035 20.9 5.3 31 256-286 4-34 (63)
146 PF14800 DUF4481: Domain of un 33.2 1.2E+02 0.0027 28.4 6.1 34 261-294 64-97 (308)
147 MTH00022 CYTB cytochrome b; Va 32.9 1.7E+02 0.0037 28.5 7.4 84 200-290 41-138 (379)
148 TIGR02125 CytB-hydogenase Ni/F 32.8 2.2E+02 0.0048 24.6 7.6 47 157-204 9-64 (211)
149 PF15330 SIT: SHP2-interacting 32.5 87 0.0019 24.7 4.4 22 297-318 5-26 (107)
150 PRK10263 DNA translocase FtsK; 31.9 2.2E+02 0.0048 32.4 8.7 11 264-274 115-125 (1355)
151 PRK09546 zntB zinc transporter 31.9 1.3E+02 0.0029 28.3 6.4 44 265-308 269-313 (324)
152 PF12794 MscS_TM: Mechanosensi 31.7 3.8E+02 0.0083 25.5 9.5 58 228-285 156-222 (340)
153 PF02628 COX15-CtaA: Cytochrom 31.6 4.2E+02 0.0092 24.5 13.0 20 224-243 131-150 (302)
154 TIGR00383 corA magnesium Mg(2+ 31.4 1.5E+02 0.0032 27.7 6.6 43 266-308 264-307 (318)
155 MTH00191 CYTB cytochrome b; Pr 31.3 2.2E+02 0.0047 27.6 7.8 85 199-290 38-136 (365)
156 MTH00053 CYTB cytochrome b; Pr 31.2 2.4E+02 0.0052 27.6 8.1 84 200-290 43-140 (381)
157 MTH00074 CYTB cytochrome b; Pr 31.1 2E+02 0.0043 28.1 7.5 84 200-290 43-140 (380)
158 PF02508 Rnf-Nqr: Rnf-Nqr subu 31.0 3.2E+02 0.007 23.8 8.1 100 224-333 67-170 (190)
159 MTH00119 CYTB cytochrome b; Pr 30.8 2.1E+02 0.0047 27.8 7.7 84 200-290 43-140 (380)
160 PRK10847 hypothetical protein; 30.6 1.5E+02 0.0032 26.3 6.2 11 313-323 207-217 (219)
161 PF14007 YtpI: YtpI-like prote 30.6 1.5E+02 0.0033 22.6 5.2 18 266-283 62-79 (89)
162 PF05297 Herpes_LMP1: Herpesvi 30.0 17 0.00038 33.7 0.0 13 156-168 19-31 (381)
163 MTH00224 CYTB cytochrome b; Pr 29.5 1.3E+02 0.0028 29.4 5.9 84 200-290 43-140 (379)
164 PF04238 DUF420: Protein of un 29.4 3E+02 0.0064 22.6 7.2 86 152-246 27-126 (133)
165 PRK12456 Na(+)-translocating N 28.8 3.4E+02 0.0074 23.9 7.9 94 229-332 81-178 (199)
166 PF11158 DUF2938: Protein of u 28.7 62 0.0013 27.2 3.1 49 228-276 95-149 (150)
167 COG4329 Predicted membrane pro 28.6 60 0.0013 26.7 2.9 20 262-281 92-111 (160)
168 TIGR01940 nqrE NADH:ubiquinone 28.3 3.2E+02 0.007 24.1 7.6 95 228-332 82-180 (200)
169 PRK02830 Na(+)-translocating N 28.3 3.5E+02 0.0075 24.0 7.8 95 228-332 83-181 (202)
170 PF01578 Cytochrom_C_asm: Cyto 28.3 2.4E+02 0.0051 24.6 7.0 23 153-175 69-91 (214)
171 PF14387 DUF4418: Domain of un 28.2 1.1E+02 0.0023 24.9 4.3 27 186-212 29-58 (124)
172 COG4097 Predicted ferric reduc 27.9 5.9E+02 0.013 25.0 10.9 24 221-244 73-96 (438)
173 PF01794 Ferric_reduct: Ferric 27.7 1.4E+02 0.003 23.1 5.0 80 188-270 33-121 (125)
174 COG4097 Predicted ferric reduc 27.4 76 0.0016 30.9 3.8 56 225-280 39-96 (438)
175 PF00115 COX1: Cytochrome C an 27.4 92 0.002 30.9 4.7 61 152-212 42-108 (447)
176 PF15099 PIRT: Phosphoinositid 27.3 38 0.00083 27.5 1.5 22 265-286 54-75 (129)
177 PHA03049 IMV membrane protein; 27.0 1.3E+02 0.0027 21.6 3.9 31 302-332 10-44 (68)
178 PF12650 DUF3784: Domain of un 26.8 1.9E+02 0.0041 21.9 5.4 28 260-287 40-67 (97)
179 COG4244 Predicted membrane pro 26.8 4E+02 0.0087 22.7 8.0 116 158-281 22-140 (160)
180 PF15099 PIRT: Phosphoinositid 26.6 66 0.0014 26.2 2.8 27 225-251 78-106 (129)
181 PRK12585 putative monovalent c 26.4 1.2E+02 0.0025 26.7 4.4 23 187-209 33-57 (197)
182 COG3658 Cytochrome b [Energy p 26.3 4.2E+02 0.0091 22.8 9.4 59 225-283 35-116 (192)
183 COG1276 PcoD Putative copper e 26.2 5.3E+02 0.011 24.2 8.9 88 152-245 143-238 (289)
184 PRK01061 Na(+)-translocating N 26.1 2.9E+02 0.0063 25.2 7.1 95 228-332 92-190 (244)
185 TIGR00930 2a30 K-Cl cotranspor 26.1 3.5E+02 0.0076 29.9 9.1 28 253-280 489-516 (953)
186 PF10002 DUF2243: Predicted me 26.0 3.3E+02 0.0072 22.7 6.8 51 194-247 50-100 (143)
187 PF14898 DUF4491: Domain of un 25.4 1.3E+02 0.0028 23.2 4.0 8 326-333 85-92 (94)
188 PF05745 CRPA: Chlamydia 15 kD 24.5 1.2E+02 0.0025 24.9 3.8 28 192-219 65-92 (150)
189 PF04277 OAD_gamma: Oxaloaceta 24.5 1.6E+02 0.0034 21.4 4.3 25 294-318 11-35 (79)
190 PF01578 Cytochrom_C_asm: Cyto 24.5 4.7E+02 0.01 22.7 9.7 25 187-211 70-94 (214)
191 PRK12405 electron transport co 24.3 5.3E+02 0.012 23.3 11.7 69 159-238 37-106 (231)
192 KOG4293 Predicted membrane pro 24.3 18 0.00038 35.6 -1.1 112 153-265 278-395 (403)
193 COG0598 CorA Mg2+ and Co2+ tra 24.1 1.5E+02 0.0032 28.0 5.2 44 266-309 268-312 (322)
194 PF15110 TMEM141: TMEM141 prot 24.1 1.5E+02 0.0033 22.7 4.1 51 265-315 29-79 (94)
195 PF04247 SirB: Invasion gene e 23.8 3.9E+02 0.0084 21.5 8.1 21 259-279 39-59 (123)
196 COG2322 Predicted membrane pro 23.8 4.7E+02 0.01 22.5 7.4 28 260-287 119-146 (177)
197 cd00284 Cytochrome_b_N Cytochr 23.5 2.2E+02 0.0048 25.0 5.8 91 157-251 23-130 (200)
198 PF06570 DUF1129: Protein of u 23.2 4.9E+02 0.011 22.7 8.0 24 261-284 78-101 (206)
199 TIGR02891 CtaD_CoxA cytochrome 23.0 7.9E+02 0.017 24.8 12.2 59 152-210 49-113 (506)
200 PF11014 DUF2852: Protein of u 22.9 77 0.0017 25.4 2.5 21 160-180 12-32 (115)
201 TIGR00780 ccoN cytochrome c ox 22.8 6.6E+02 0.014 25.3 9.7 82 152-239 50-136 (474)
202 PF11239 DUF3040: Protein of u 22.6 2.8E+02 0.0061 20.4 5.4 28 260-287 38-65 (82)
203 KOG4663 Cytochrome b [Energy p 22.2 1.1E+02 0.0024 26.9 3.5 59 223-286 78-136 (210)
204 PF11297 DUF3098: Protein of u 22.2 3E+02 0.0065 20.0 5.2 22 191-212 6-27 (69)
205 COG1113 AnsP Gamma-aminobutyra 22.1 4.8E+02 0.011 26.2 8.3 15 258-272 399-413 (462)
206 KOG4841 Dolichol-phosphate man 21.6 2.5E+02 0.0054 21.3 4.8 29 260-288 8-36 (95)
207 PF02322 Cyto_ox_2: Cytochrome 21.3 4.5E+02 0.0097 25.0 7.9 58 229-286 83-144 (328)
208 TIGR01478 STEVOR variant surfa 20.9 1.1E+02 0.0023 28.6 3.3 9 311-319 278-286 (295)
209 PF06679 DUF1180: Protein of u 20.6 1.3E+02 0.0029 25.6 3.6 9 325-333 136-144 (163)
210 PTZ00370 STEVOR; Provisional 20.5 1.1E+02 0.0024 28.6 3.3 9 311-319 274-282 (296)
211 PRK10582 cytochrome o ubiquino 20.3 4.4E+02 0.0096 20.8 7.0 67 191-269 17-86 (109)
212 PRK03557 zinc transporter ZitB 20.2 7.2E+02 0.016 23.2 9.1 9 226-234 52-60 (312)
213 PRK12586 putative monovalent c 20.1 2E+02 0.0043 24.1 4.5 47 161-211 14-62 (145)
214 TIGR00910 2A0307_GadC glutamat 20.1 8.9E+02 0.019 24.3 10.3 22 262-283 400-421 (507)
No 1
>cd08760 Cyt_b561_FRRS1_like Eukaryotic cytochrome b(561), including the FRRS1 gene product. Cytochrome b(561), as found in eukaryotes, similar to and including the human FRRS1 gene product (ferric-chelate reductase 1), also called SDR-2 (stromal cell-derived receptor 2). This family comprises a variety of domain architectures, many of which contain dopamine beta-monooxygenase (DOMON) domains. The protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=100.00 E-value=5.4e-33 Score=244.38 Aligned_cols=159 Identities=45% Similarity=0.832 Sum_probs=145.5
Q ss_pred cccchhhhhHHHHHHHHHHHHhhhhhhhhhccCCCChhhhhhhHHHHHHHHHHHHHHhheeeeccccccCCCCcccchhh
Q 019892 151 VSSREKKNHGALGMIGWGIILPVGAIIPRYFKHKDPLWYYLHAIIQLVGFIFGLATVLLGIQLYNKLNVKNANISAHRGI 230 (334)
Q Consensus 151 ~~~~~~~~Hg~lm~~aw~~l~p~gil~aR~~k~~~~~w~~~H~~~q~~~~~~~i~g~~l~~~~~~~~~~~~~~~~~H~~l 230 (334)
+.+..+++||++|++||++++|+|++++||++..++.||++|+.+|+++++++++|+++++... ..+.+++++.|+++
T Consensus 31 ~~~~~~~~Hg~lm~iaw~~l~p~gil~ar~~~~~~~~~~~~H~~~q~~~~~~~i~g~~~~~~~~--~~~~~~~~~~H~~l 108 (191)
T cd08760 31 SSDTLIKAHGVLMAIAWGILMPIGALLARYFLLGDPVWFYLHAGLQLLAVLLAIAGFVLGIVLV--QGGGGSLNNAHAIL 108 (191)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHhh--ccCCCCCcCcchhh
Confidence 3678999999999999999999999999998666789999999999999999999999998865 12224799999999
Q ss_pred hHHHHHHHHHHHHHhhcccCCCCCCcccccchhHHHHHHHHHHHHHHHHHhhhhccCC--CcchhhHHHHHHHHHHHHHH
Q 019892 231 GIFILVLSILQILAFFLRPSKDSKFRRFWNWYHHWFGRLALFFASVNIVLGIQIGYAG--NEWKIGYGFLLAVVLLAVIV 308 (334)
Q Consensus 231 G~~~~~l~~~Q~~~g~~r~~~~~~~r~~~~~~H~~~G~~~~~lg~~~i~~G~~~~~~~--~~~~~~y~~~~~~~~~~~~~ 308 (334)
|+++++++++|+++|++||.+..+.|+.|+++|+++|++++++|++|+.+|+.+.+.+ +.+.+.|+++++++++++++
T Consensus 109 Gl~~~~l~~lQ~~~G~~~~~~~~~~R~~~~~~H~~~G~~~~~l~~v~i~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (191)
T cd08760 109 GIIVLALAILQPLLGLLRPHPGSKKRSIWNWAHRWLGRAALILAIVNIFLGLDLAGAGTPKAWKIAYGVVVAVLALVYLI 188 (191)
T ss_pred hHHHHHHHHHHHHHHHhcCCCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchhhHHHHHHHHHHHHHHH
Confidence 9999999999999999999988888999999999999999999999999999999987 78889999999999999998
Q ss_pred HHH
Q 019892 309 LET 311 (334)
Q Consensus 309 le~ 311 (334)
+|+
T Consensus 189 l~~ 191 (191)
T cd08760 189 LEI 191 (191)
T ss_pred HcC
Confidence 873
No 2
>KOG4293 consensus Predicted membrane protein, contains DoH and Cytochrome b-561/ferric reductase transmembrane domains [Signal transduction mechanisms]
Probab=99.96 E-value=2.5e-30 Score=250.53 Aligned_cols=310 Identities=34% Similarity=0.638 Sum_probs=244.2
Q ss_pred ccceEEEEEe-CCCcEEEEEEEEcCCCcEEEEEECCCC-CCCCCcEEEEEEcC-CCCeEEEEEEeecccccccccCCCCc
Q 019892 5 NQHSLLQYAQ-RDDHVMTIILSAIYTTGWVGMGFSKDG-MMAGSSAMVGWFNK-KGQPRIKQYYLQGTRSSQVIHDKGEL 81 (334)
Q Consensus 5 ~~~~~l~W~~-~~~~~i~f~l~a~~~~gWvaiGfs~~~-~M~gsd~vI~~~~~-~G~~~v~~~~~~g~~~p~v~~~~~~l 81 (334)
..+-.+++.. ++|..+.+.+.++....|++.+++|.+ .|.++.++++|..+ +|...+..++..++.+ ...+....+
T Consensus 44 ~~~~~i~~~~~~~~~~~~i~~~~~~~~~w~~~~~~p~~t~m~~~~~~va~~~~~~g~~~~~t~~~~~~~~-s~~~~~~~~ 122 (403)
T KOG4293|consen 44 TLNSFIHYTYNSANGVLSIAFSAPLSSAWVAWAINPTGTGMVGSRALVAYAGSSSGATTVKTYVILGYSP-SLVPALLSF 122 (403)
T ss_pred CCCceEEEEEecCCCeEEEEEecCCcccccccccCCccccccccceeeeeeccccchhhceeeeecccch-hhcccccce
Confidence 4455677774 557899999999855559999999865 79999999999876 5777888888888775 333332223
Q ss_pred cccCCCceEEEeC---cEEEEEEEEecCCCCCcccEEEccCCCCCCCCCcccccCCC-----ceeEeecC--CCccccc-
Q 019892 82 PLTNVPPVVAIHG---AMIYMAFQLKFENHLRQQPIILAFGSRYPKHFHLTHHVDKR-----TIMFDFSG--GSSSVLY- 150 (334)
Q Consensus 82 ~~~~~~~~~~~~~---g~~~~~F~r~~~~~~~~~~~IwA~G~~~~~~~~l~~H~~~g-----~~~ldL~~--g~~~~~~- 150 (334)
++.+.+......+ ..++++|+.+. .+...+..+|+.|+......++.+|+..+ ...+|++. |.....+
T Consensus 123 ~~~~~~~~~~~~~~~~~~if~~~~l~~-~~~~~~~~~w~~~~~~~~g~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~ 201 (403)
T KOG4293|consen 123 TLGNVRAECNLRSSSPIGIFASFKLAG-ANGGKYSAVWQVGPTGSGGGRPKRHKLSGSNLASVTSLDLTSDIGELSITSE 201 (403)
T ss_pred eeecCcchhhccCCCCceEEEEEEeec-CCCceeEEEEEccCCccCCCCCccCccccCCccceeeccccccccccccccc
Confidence 3322221112233 67888888774 12678899999999754357888887642 23445544 3222111
Q ss_pred -----cccchhhhhHHHHHHHHHHHHhhhhhhhhhccCC---CChhhhhhhHHHHHHHHHHHHHHhheeeeccccccCCC
Q 019892 151 -----VSSREKKNHGALGMIGWGIILPVGAIIPRYFKHK---DPLWYYLHAIIQLVGFIFGLATVLLGIQLYNKLNVKNA 222 (334)
Q Consensus 151 -----~~~~~~~~Hg~lm~~aw~~l~p~gil~aR~~k~~---~~~w~~~H~~~q~~~~~~~i~g~~l~~~~~~~~~~~~~ 222 (334)
....+...||++|.++|++++|.|++.+||+|.+ .+.||++|+.+|..++++.+.|+..+.+..++.. ..
T Consensus 202 ~~~~~~~~~~~~~hgil~~~sw~il~p~g~i~ary~~~~~~~~~~Wfy~H~~~~~~~~~~~~~~~~~g~~~~~~s~--~~ 279 (403)
T KOG4293|consen 202 GNFNSSGLKLRMTHGILNALSWGILFPAGAIIARYLRQKPSGDPTWFYIHRACQFTGFILGVAGFVDGLKLSNESD--GT 279 (403)
T ss_pred CcccCcchhccccHHHHhhhhhheeccccceeEEEecccCCCCcchhhhhhhheeeEEEEEeeeeeeeEEEccCCC--ce
Confidence 1444556699999999999999999999999987 8899999999999998888899998888777533 25
Q ss_pred CcccchhhhHHHHHHHHHHHHHhhcccCCCCCCcccccchhHHHHHHHHHHHHHHHHHhhhhccCCCcch-hhHHHHHHH
Q 019892 223 NISAHRGIGIFILVLSILQILAFFLRPSKDSKFRRFWNWYHHWFGRLALFFASVNIVLGIQIGYAGNEWK-IGYGFLLAV 301 (334)
Q Consensus 223 ~~~~H~~lG~~~~~l~~~Q~~~g~~r~~~~~~~r~~~~~~H~~~G~~~~~lg~~~i~~G~~~~~~~~~~~-~~y~~~~~~ 301 (334)
....|..+|+.++++.++|++..++||.++++.|++||++|+..||..+++|++|++.|+.+.+....|. +.|+.+.+.
T Consensus 280 ~~~~h~~~G~~~~~l~~lQ~~~~l~Rp~~~~k~R~~~nwyH~~~g~~~~~~~~~~i~~~~~l~~~~~~w~~~~~~~~~~~ 359 (403)
T KOG4293|consen 280 VYSAHTDLGIILLVLAFLQPLALLLRPLPESKIRRYWNWYHHLVGRLSIILGIVNIFDGLELLYPGQSWIKLGYGSILAV 359 (403)
T ss_pred eeeecccchhHHHHHHHHHHHHHHhcCCcccCceeccceeeeecCcceeeehhhHHhhhHhhhcCCCceEEeeeeeEEEE
Confidence 6799999999999999999999999999999999999999999999999999999999999999888887 789988888
Q ss_pred HHHHHHHHHHHHHhhhC
Q 019892 302 VLLAVIVLETLSWMKKR 318 (334)
Q Consensus 302 ~~~~~~~le~~~~~~~r 318 (334)
..++.+.+|+++|+..-
T Consensus 360 ~~~~~~~le~~~~~~~~ 376 (403)
T KOG4293|consen 360 LGLIAVILEILSWRITI 376 (403)
T ss_pred echhhhhhhhheeeeee
Confidence 88999999998887743
No 3
>smart00665 B561 Cytochrome b-561 / ferric reductase transmembrane domain. Cytochrome b-561 recycles ascorbate for the generation of norepinephrine by dopamine-beta-hydroxylase in the chromaffin vesicles of the adrenal gland. It is a transmembrane heme protein with the two heme groups being bound to conserved histidine residues. A cytochrome b-561 homologue, termed Dcytb, is an iron-regulated ferric reductase in the duodenal mucosa. Other homologues of these are also likely to be ferric reductases. SDR2 is proposed to be important in regulating the metabolism of iron in the onset of neurodegenerative disorders.
Probab=99.93 E-value=1.5e-26 Score=190.87 Aligned_cols=124 Identities=31% Similarity=0.522 Sum_probs=111.5
Q ss_pred hhHHHHHHHHHHHHhhhhhhhhh-c-cCCCChhhhhhhHHHHHHHHHHHHHHhheeeeccccccCCCCcccchhhhHHHH
Q 019892 158 NHGALGMIGWGIILPVGAIIPRY-F-KHKDPLWYYLHAIIQLVGFIFGLATVLLGIQLYNKLNVKNANISAHRGIGIFIL 235 (334)
Q Consensus 158 ~Hg~lm~~aw~~l~p~gil~aR~-~-k~~~~~w~~~H~~~q~~~~~~~i~g~~l~~~~~~~~~~~~~~~~~H~~lG~~~~ 235 (334)
+||++|.+||++++|+|++++|+ . +..++.|+++|+.+|.++++++++|+++++...++.+ ++|++++|+++|++++
T Consensus 1 ~H~~lm~~~f~~l~p~gil~~r~~~~~~~~~~~~~~H~~lq~~a~~~~~~g~~~~~~~~~~~~-~~~~~s~H~~lGl~~~ 79 (129)
T smart00665 1 LHPVLMILGFGFLMGEAILVARPLTRFLSKPTWFLLHVVLQILALVLGVIGLLAIFISHNESG-IANFYSLHSWLGLAAF 79 (129)
T ss_pred CcHHHHHHHHHHHHHHHHHHhhhHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHccccC-CCCccchhHHHHHHHH
Confidence 69999999999999999999997 3 3346789999999999999999999999988766543 2489999999999999
Q ss_pred HHHHHHHHHhhcccCCC---CCCcccccchhHHHHHHHHHHHHHHHHHhh
Q 019892 236 VLSILQILAFFLRPSKD---SKFRRFWNWYHHWFGRLALFFASVNIVLGI 282 (334)
Q Consensus 236 ~l~~~Q~~~g~~r~~~~---~~~r~~~~~~H~~~G~~~~~lg~~~i~~G~ 282 (334)
++.++|++.|++++.++ .+.|+.++++|+++|++++++|++|+.+|+
T Consensus 80 ~l~~~Q~~~G~~~~~~~~~~~~~r~~~~~~H~~~G~~~~~la~~~~~lG~ 129 (129)
T smart00665 80 VLAGLQWLSGFLRPLPPGLPSKYRSYLNPYHRFVGLAAFILAIVTIFLGL 129 (129)
T ss_pred HHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 99999999999987765 677899999999999999999999999985
No 4
>PF03188 Cytochrom_B561: Eukaryotic cytochrome b561; InterPro: IPR004877 Cytochrome b561 is a secretory vesicle-specific electron transport protein []. It is an integral membrane protein, that binds two haem groups non-covalently. This entry represents the eukaryotic family. Members of the 'bacterial cytochrome b561' family can be found in IPR011577 from INTERPRO.; GO: 0016021 integral to membrane
Probab=99.91 E-value=5.1e-24 Score=177.43 Aligned_cols=127 Identities=30% Similarity=0.508 Sum_probs=110.9
Q ss_pred hhHHHHHHHHHHHHhhhhhhhhhcc---CCCChhhhhhhHHHHHHHHHHHHHHhheeeeccccccCCCCcccchhhhHHH
Q 019892 158 NHGALGMIGWGIILPVGAIIPRYFK---HKDPLWYYLHAIIQLVGFIFGLATVLLGIQLYNKLNVKNANISAHRGIGIFI 234 (334)
Q Consensus 158 ~Hg~lm~~aw~~l~p~gil~aR~~k---~~~~~w~~~H~~~q~~~~~~~i~g~~l~~~~~~~~~~~~~~~~~H~~lG~~~ 234 (334)
+|+++|++||++++|.|++++|+.+ ..++.|+++|..+|.++++++++|+++++...+..+ .+|++++|+++|+++
T Consensus 1 ~H~~lm~~~f~~l~~~~il~~r~~~~~~~~~~~~~~~H~~lq~l~~~~~~~G~~~~~~~~~~~~-~~h~~s~H~~lG~~~ 79 (137)
T PF03188_consen 1 WHPILMTIGFVFLMPEGILAARYNPFRRKSRKWWFRIHWILQVLALVFAIIGFVAIFINKNRNG-KPHFKSWHSILGLAT 79 (137)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhccccC-CCCCCCchhhhhHHH
Confidence 6999999999999999999999732 235789999999999999999999999887655433 358999999999999
Q ss_pred HHHHHHHHHHhhcc---cCCCCCCcccccchhHHHHHHHHHHHHHHHHHhhhhc
Q 019892 235 LVLSILQILAFFLR---PSKDSKFRRFWNWYHHWFGRLALFFASVNIVLGIQIG 285 (334)
Q Consensus 235 ~~l~~~Q~~~g~~r---~~~~~~~r~~~~~~H~~~G~~~~~lg~~~i~~G~~~~ 285 (334)
++++++|++.|+++ |.++.+.|+.++++|+++|++++++|++|+.+|+...
T Consensus 80 ~~l~~~Q~~~G~~~~~~~~~~~~~r~~~~~~H~~~G~~~~~l~~~~i~~G~~~~ 133 (137)
T PF03188_consen 80 FVLALLQPLLGFFRFFMPGLPRKRRPIWNKWHRWLGYLIYVLAIATIFLGLTEK 133 (137)
T ss_pred HHHHHHHHHHHHHHHccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999875 3455567888999999999999999999999999543
No 5
>cd08766 Cyt_b561_ACYB-1_like Plant cytochrome b(561), including the carbon monoxide oxygenase ACYB-1. Cytochrome b(561), as found in plants, similar to the Arabidopsis thaliana ACYB-1 gene product, a cytochrome b561 isoform localized to the tonoplast. This protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), and might be capable of trans-membrane electron transport from intracellular ascorbate to extracellular ferric chelates. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=99.89 E-value=2.3e-23 Score=173.36 Aligned_cols=134 Identities=18% Similarity=0.179 Sum_probs=119.3
Q ss_pred cccchhhhhHHHHHHHHHHHHhhhhhhhhhccCCCChhhhhhhHHHHHHHHHHHHHHhheeeeccccccCCCCcccchhh
Q 019892 151 VSSREKKNHGALGMIGWGIILPVGAIIPRYFKHKDPLWYYLHAIIQLVGFIFGLATVLLGIQLYNKLNVKNANISAHRGI 230 (334)
Q Consensus 151 ~~~~~~~~Hg~lm~~aw~~l~p~gil~aR~~k~~~~~w~~~H~~~q~~~~~~~i~g~~l~~~~~~~~~~~~~~~~~H~~l 230 (334)
|+..++++|+.||.+++.++++.||++.|..|..++.+..+|+.+|.+++++.++|+..++...++.+ .+|++|+|+|+
T Consensus 3 ~~~~~Fn~HP~lM~~gfi~l~~eAiL~~r~~~~~k~~~k~iH~~l~~la~~~~vvGl~avf~~~~~~~-~~~~~SlHSwl 81 (144)
T cd08766 3 NKGLIFNVHPVLMVIGFIFLAGEAILAYKTVPGSREVQKAVHLTLHLVALVLGIVGIYAAFKFHNEVG-IPNLYSLHSWL 81 (144)
T ss_pred CCcceeeccHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccC-ccccccHHHHH
Confidence 36678999999999999999999999999988767788899999999999999999999888766544 35899999999
Q ss_pred hHHHHHHHHHHHHHhh---cccCCCCCCcccccchhHHHHHHHHHHHHHHHHHhhhhc
Q 019892 231 GIFILVLSILQILAFF---LRPSKDSKFRRFWNWYHHWFGRLALFFASVNIVLGIQIG 285 (334)
Q Consensus 231 G~~~~~l~~~Q~~~g~---~r~~~~~~~r~~~~~~H~~~G~~~~~lg~~~i~~G~~~~ 285 (334)
|++++++..+|.+.|+ +.|....+.|....++|+++|+++++++++++.+|+.+.
T Consensus 82 Gl~t~~L~~lQ~~~G~~~f~~P~~~~~~r~~~~p~H~~~G~~~~~la~~t~~lGl~ek 139 (144)
T cd08766 82 GIGTISLFGLQWLFGFVTFWFPGASRNTRAALLPWHVFLGLAIYYLAIATAETGLLEK 139 (144)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999995 477765556778888999999999999999999998764
No 6
>cd08554 Cyt_b561 Eukaryotic cytochrome b(561). Cytochrome b(561) is a family of endosomal or secretory vesicle-specific electron transport proteins. They are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments. This is an exclusively eukaryotic family. Members of the prokaryotic cytochrome b561 family are not deemed homologous.
Probab=99.89 E-value=2.5e-23 Score=172.12 Aligned_cols=126 Identities=27% Similarity=0.377 Sum_probs=110.7
Q ss_pred hhhhHHHHHHHHHHHHhhhhhhhhhccCC-CChhhhhhhHHHHHHHHHHHHHHhheeeeccccccCCCCcccchhhhHHH
Q 019892 156 KKNHGALGMIGWGIILPVGAIIPRYFKHK-DPLWYYLHAIIQLVGFIFGLATVLLGIQLYNKLNVKNANISAHRGIGIFI 234 (334)
Q Consensus 156 ~~~Hg~lm~~aw~~l~p~gil~aR~~k~~-~~~w~~~H~~~q~~~~~~~i~g~~l~~~~~~~~~~~~~~~~~H~~lG~~~ 234 (334)
+++|+++|.++|++++|.|++++|++|.. ++.|+++|+.+|.+++++.++|+.+++...++. +..|+.+.|+++|+++
T Consensus 2 f~~H~~lm~~g~~~l~~~~il~~r~~~~~~~~~~~~~H~~l~~l~~~~~~~G~~~~~~~~~~~-~~~h~~s~Hs~lGl~~ 80 (131)
T cd08554 2 FNWHPLLMVIGFVFLMGEALLVYRVFRLLTKRALKLLHAILHLLAFVLGLVGLLAVFLFHNAG-GIANLYSLHSWLGLAT 80 (131)
T ss_pred CCccHHHHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-CcccchhHHHHHHHHH
Confidence 58999999999999999999999998764 468899999999999999999999998776532 2358999999999999
Q ss_pred HHHHHHHHHHhhcc---cCCCCCCcccccchhHHHHHHHHHHHHHHHHHhh
Q 019892 235 LVLSILQILAFFLR---PSKDSKFRRFWNWYHHWFGRLALFFASVNIVLGI 282 (334)
Q Consensus 235 ~~l~~~Q~~~g~~r---~~~~~~~r~~~~~~H~~~G~~~~~lg~~~i~~G~ 282 (334)
+++.++|++.|+.+ |.+..+.|+.++++|+++|+++++++++|+++|+
T Consensus 81 ~~l~~~q~~~G~~~~~~~~~~~~~r~~~~~~H~~~G~~~~~la~~t~~~G~ 131 (131)
T cd08554 81 VLLFLLQFLSGFVLFLLPLLRLSYRSSLLPFHRFFGLAIFVLAIATILLGI 131 (131)
T ss_pred HHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999765 4433335889999999999999999999999985
No 7
>PLN02351 cytochromes b561 family protein
Probab=99.88 E-value=2.5e-22 Score=178.17 Aligned_cols=132 Identities=16% Similarity=0.107 Sum_probs=112.8
Q ss_pred ccchh-hhhHHHHHHHHHHHHhhhhhhhhhccCCCChhhhhhhHHHHHHHHHHHHHHhheeeeccccccCCCCcccchhh
Q 019892 152 SSREK-KNHGALGMIGWGIILPVGAIIPRYFKHKDPLWYYLHAIIQLVGFIFGLATVLLGIQLYNKLNVKNANISAHRGI 230 (334)
Q Consensus 152 ~~~~~-~~Hg~lm~~aw~~l~p~gil~aR~~k~~~~~w~~~H~~~q~~~~~~~i~g~~l~~~~~~~~~~~~~~~~~H~~l 230 (334)
.+..+ ++|++||.++|.+|.+.||++.|.+|..++.|+.+|..+|.+++++.++|+.. ...+..+..+|++++|+|+
T Consensus 46 ~~~iffn~HP~lMviGfi~L~geAILvYR~~~~~~k~~K~lH~~Lh~~Ali~~vvGl~a--~fh~~~~~i~nlySLHSWl 123 (242)
T PLN02351 46 EDLVYAVLHPLLMVIGFILISGEAILVHRWLPGSRKTKKSVHLWLQGLALASGVFGIWT--KFHGQDGIVANFYSLHSWM 123 (242)
T ss_pred ccceeecccHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHHHHHHH--HHhcccCCccchhHHHHHH
Confidence 33355 79999999999999999999999998766779999999999999999999988 3223221125799999999
Q ss_pred hHHHHHHHHHHHHHhh---cccCCCCCCcccccchhHHHHHHHHHHHHHHHHHhhhhc
Q 019892 231 GIFILVLSILQILAFF---LRPSKDSKFRRFWNWYHHWFGRLALFFASVNIVLGIQIG 285 (334)
Q Consensus 231 G~~~~~l~~~Q~~~g~---~r~~~~~~~r~~~~~~H~~~G~~~~~lg~~~i~~G~~~~ 285 (334)
|++++++..+|.+.|+ +.|......|....++|.++|+++++++++++.+|+.+.
T Consensus 124 Gl~tv~Lf~lQwv~Gf~~F~~P~~~~~~Ra~~~P~Hv~~Gl~if~LaiaTa~lGl~EK 181 (242)
T PLN02351 124 GLICVSLFGAQWLTGFMSFWHRGEMRTTRTTVLPWHVFLGLYTYGLAVATAETGLLEK 181 (242)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCchhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999996 356665567888889999999999999999999998763
No 8
>cd08761 Cyt_b561_CYB561D2_like Eukaryotic cytochrome b(561), including the CYB561D2 gene product. Cytochrome b(561), as found in eukaryotes, similar to and including the human CYB561D2 gene product. CYB561D2 is a candidate tumor suppressor. The protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=99.87 E-value=7e-22 Score=172.58 Aligned_cols=132 Identities=20% Similarity=0.198 Sum_probs=111.9
Q ss_pred ccchhhhhHHHHHHHHHHHHhhhhhhhhhcc----CCCChhhhhhhHHHHHHHHHHHHHHhheeeeccccccCCCCcccc
Q 019892 152 SSREKKNHGALGMIGWGIILPVGAIIPRYFK----HKDPLWYYLHAIIQLVGFIFGLATVLLGIQLYNKLNVKNANISAH 227 (334)
Q Consensus 152 ~~~~~~~Hg~lm~~aw~~l~p~gil~aR~~k----~~~~~w~~~H~~~q~~~~~~~i~g~~l~~~~~~~~~~~~~~~~~H 227 (334)
...++++|+++|+++|++++|+|++..|... ..++.|+++|+.+|.++++++++|+.+++...+.. +.+|+++.|
T Consensus 17 ~~~~f~~Hp~~m~i~~~~l~~~~il~~~~~~~~~~~~~~~~~~~H~~l~~la~~~~~~G~~~~~~~~~~~-~~~hf~s~H 95 (183)
T cd08761 17 GTSLFSWHPLLMSLGFLLLMTEALLLLQPTSSLTKLARKTKVRLHWILQLLALLCILAGLVAIYYNKERN-GKPHFTSWH 95 (183)
T ss_pred ccceeehhHHHHHHHHHHHHHHHHHHhcCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcccC-CCCCccchh
Confidence 4568999999999999999999999765321 13567899999999999999999998888765443 335899999
Q ss_pred hhhhHHHHHHHHHHHHHhhc---ccCCC--CCCcccccchhHHHHHHHHHHHHHHHHHhhhh
Q 019892 228 RGIGIFILVLSILQILAFFL---RPSKD--SKFRRFWNWYHHWFGRLALFFASVNIVLGIQI 284 (334)
Q Consensus 228 ~~lG~~~~~l~~~Q~~~g~~---r~~~~--~~~r~~~~~~H~~~G~~~~~lg~~~i~~G~~~ 284 (334)
+++|++++++.++|++.|++ +|... .++|+.++++|+++|++++++|++|+.+|+..
T Consensus 96 ~~lGl~~~~l~~~Q~~~G~~~~~~~~~~~~~~~r~~~~~~H~~~G~~~~~l~~~t~~lGl~~ 157 (183)
T cd08761 96 GILGLVTVILIVLQALGGLALLYPPGLRRGESKAKKLKKYHRLSGYVAYLLGLATLVLGLET 157 (183)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHhhHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 99999999999999999975 33332 35678899999999999999999999999988
No 9
>cd08764 Cyt_b561_CG1275_like Non-vertebrate eumetazoan cytochrome b(561). Cytochrome b(561), as found in non-vertebrate eumetazoans, similar to the Drosophila melanogaster CG1275 gene product. This protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=99.86 E-value=2.7e-21 Score=170.48 Aligned_cols=133 Identities=22% Similarity=0.277 Sum_probs=114.8
Q ss_pred ccchhhhhHHHHHHHHHHHHhhhhhhhhhccCC-CChhhhhhhHHHHHHHHHHHHHHhheeeecccc-ccCCCCcccchh
Q 019892 152 SSREKKNHGALGMIGWGIILPVGAIIPRYFKHK-DPLWYYLHAIIQLVGFIFGLATVLLGIQLYNKL-NVKNANISAHRG 229 (334)
Q Consensus 152 ~~~~~~~Hg~lm~~aw~~l~p~gil~aR~~k~~-~~~w~~~H~~~q~~~~~~~i~g~~l~~~~~~~~-~~~~~~~~~H~~ 229 (334)
+...+++|+++|.+++.+++..||++.|.++.. ++.+..+|+.+|.+++++.++|+..++...++. ++.+|++|+|++
T Consensus 20 ~~~~Fn~HP~lM~~Gfi~l~geAiLvyr~~~~~~k~~~k~~H~~L~~lAl~~~ivGl~avf~~hn~~~~~~~hfySlHSw 99 (214)
T cd08764 20 PGLQFNWHPLLMVLGLIFLYGNSILVYRVFRNTRKKRLKLLHAVLHLLAFILAVIGLKAVFDSHNLAKPPIPNMYSLHSW 99 (214)
T ss_pred CCceEeecHHHHHHHHHHHHHHHHHHhccCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCcccchHHH
Confidence 456799999999999999999999999988853 345678999999999999999998887766554 234689999999
Q ss_pred hhHHHHHHHHHHHHHhh---cccCCCCCCcccccchhHHHHHHHHHHHHHHHHHhhhh
Q 019892 230 IGIFILVLSILQILAFF---LRPSKDSKFRRFWNWYHHWFGRLALFFASVNIVLGIQI 284 (334)
Q Consensus 230 lG~~~~~l~~~Q~~~g~---~r~~~~~~~r~~~~~~H~~~G~~~~~lg~~~i~~G~~~ 284 (334)
+|++++++..+|.+.|+ +.|......|+...++|+++|+++++++++++.+|+.+
T Consensus 100 lGl~t~~L~~lQ~~~Gf~~fl~P~~~~~~r~~~~p~H~~~Gl~~fvLaiaT~~lGl~e 157 (214)
T cd08764 100 LGLTAVILFSLQWVGGFVSFLFPGLPETLRAAYLPLHVFFGLFIFVLAVATALLGITE 157 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999996 46765555677777799999999999999999999976
No 10
>smart00664 DoH Possible catecholamine-binding domain present in a variety of eukaryotic proteins. A predominantly beta-sheet domain present as a regulatory N-terminal domain in dopamine beta-hydroxylase, mono-oxygenase X and SDR2. Its function remains unknown at present (Ponting, Human Molecular Genetics, in press).
Probab=99.85 E-value=3.1e-20 Score=156.55 Aligned_cols=135 Identities=23% Similarity=0.352 Sum_probs=106.0
Q ss_pred ccceEEEEEeCCCcEEEEEEEEcC-CCcEEEEEECCCCCCCCCcEEEEEEcCCCCeEEEEEEeecccccccccCCCCccc
Q 019892 5 NQHSLLQYAQRDDHVMTIILSAIY-TTGWVGMGFSKDGMMAGSSAMVGWFNKKGQPRIKQYYLQGTRSSQVIHDKGELPL 83 (334)
Q Consensus 5 ~~~~~l~W~~~~~~~i~f~l~a~~-~~gWvaiGfs~~~~M~gsd~vI~~~~~~G~~~v~~~~~~g~~~p~v~~~~~~l~~ 83 (334)
+++|.++|+.+.++.|+|+++++. +.||+|||||++++|.++|+++||++++|.+.+.|+|++|+..|..+..++ ++.
T Consensus 1 ~~~~~l~W~~~~~~~v~~~l~~~~~~~gwvaiGfs~~~~M~~~d~vv~~~~~~g~~~v~d~~~~~~~~~~~d~~~~-~~~ 79 (148)
T smart00664 1 SCDYFLSWSVDGENSIAFELSGPTSTNGWVAIGFSPDGQMAGADVVVAWVDNNGRVTVKDYYTPGYGPPVEDDQQD-VTD 79 (148)
T ss_pred CceEEEEEEECCCCeEEEEEEEecCCCCEEEEEECCCCCcCCCCEEEEEEcCCCCEEEEEEEcCCCCCCCcCcccc-ccc
Confidence 468999999754389999999972 389999999999999999999999987789999999999999886544333 322
Q ss_pred cCCCceEEEeCcEEEEEEEEecCCC--------CCcccEEEccCCCCCCCCCcccccC--CCceeEeecCC
Q 019892 84 TNVPPVVAIHGAMIYMAFQLKFENH--------LRQQPIILAFGSRYPKHFHLTHHVD--KRTIMFDFSGG 144 (334)
Q Consensus 84 ~~~~~~~~~~~g~~~~~F~r~~~~~--------~~~~~~IwA~G~~~~~~~~l~~H~~--~g~~~ldL~~g 144 (334)
. . +...++|.++|+|+|+++.. +.+++++||.|+.. .++.+.+|+. .+...+++..+
T Consensus 80 ~-~--~~~~~~g~~~~~f~R~l~t~d~~d~~~~~~~~~~i~a~G~~~-~~~~~~~H~~~~~~~~~i~~~~~ 146 (148)
T smart00664 80 L-L--SATYENGVLTCRFRRKLGSNDPDDKSLLDGTVHVLWAKGPLS-PNGGLGYHDFSLKSTKKVCLSSC 146 (148)
T ss_pred c-e--eEEEECCEEEEEEEEEccCCCccccccCCCeEEEEEEECCCC-CCCCeeeccccccCceEEEeccC
Confidence 1 0 23688999999999998641 34789999999821 2577999986 45667777654
No 11
>PLN02810 carbon-monoxide oxygenase
Probab=99.85 E-value=1.2e-20 Score=166.12 Aligned_cols=134 Identities=21% Similarity=0.202 Sum_probs=120.2
Q ss_pred cccchhhhhHHHHHHHHHHHHhhhhhhhhhccCCCChhhhhhhHHHHHHHHHHHHHHhheeeeccccccCCCCcccchhh
Q 019892 151 VSSREKKNHGALGMIGWGIILPVGAIIPRYFKHKDPLWYYLHAIIQLVGFIFGLATVLLGIQLYNKLNVKNANISAHRGI 230 (334)
Q Consensus 151 ~~~~~~~~Hg~lm~~aw~~l~p~gil~aR~~k~~~~~w~~~H~~~q~~~~~~~i~g~~l~~~~~~~~~~~~~~~~~H~~l 230 (334)
+++..+++|++||.+++.++...||++.|.++..++.+..+|..+|.+++++.++|+..++...+..+. +|++|+|+|+
T Consensus 42 ~~~~~FN~HPvlMv~Gfi~l~geAIL~Yr~~~~~k~~~K~iH~~lh~~Al~l~vvGl~Avf~~Hn~~~i-~nlySLHSWl 120 (231)
T PLN02810 42 NKNLIFNLHPVLMLIGLIIIGGEAIMSYKSLPLKKEVKKLIHLVLHAIALILGIFGICAAFKNHNESGI-ANLYSLHSWL 120 (231)
T ss_pred CCCceeeehHHHHHHHHHHHhhHHHHHhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHhccccCC-CceeeHHHHH
Confidence 345689999999999999999999999998886667788999999999999999999999988776543 6899999999
Q ss_pred hHHHHHHHHHHHHHhh---cccCCCCCCcccccchhHHHHHHHHHHHHHHHHHhhhhc
Q 019892 231 GIFILVLSILQILAFF---LRPSKDSKFRRFWNWYHHWFGRLALFFASVNIVLGIQIG 285 (334)
Q Consensus 231 G~~~~~l~~~Q~~~g~---~r~~~~~~~r~~~~~~H~~~G~~~~~lg~~~i~~G~~~~ 285 (334)
|++++++..+|.+.|+ +.|....+.|....++|.++|..+++++++++.+|+.+.
T Consensus 121 Gl~tv~Lf~lQw~~Gf~~Fl~P~~~~~~R~~~lP~Hv~~Gl~if~LAiata~lGi~EK 178 (231)
T PLN02810 121 GIGIISLYGIQWIYGFIVFFFPGGSTNLRSGSLPWHVLFGLFVYILAVGNAALGFLEK 178 (231)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999997 578776677888889999999999999999999998863
No 12
>PLN02680 carbon-monoxide oxygenase
Probab=99.84 E-value=1.5e-20 Score=166.74 Aligned_cols=133 Identities=21% Similarity=0.205 Sum_probs=117.6
Q ss_pred ccchhhhhHHHHHHHHHHHHhhhhhhhhhccCCCChhhhhhhHHHHHHHHHHHHHHhheeeeccccccCCCCcccchhhh
Q 019892 152 SSREKKNHGALGMIGWGIILPVGAIIPRYFKHKDPLWYYLHAIIQLVGFIFGLATVLLGIQLYNKLNVKNANISAHRGIG 231 (334)
Q Consensus 152 ~~~~~~~Hg~lm~~aw~~l~p~gil~aR~~k~~~~~w~~~H~~~q~~~~~~~i~g~~l~~~~~~~~~~~~~~~~~H~~lG 231 (334)
+..++++|++||.+++.++...+|++.|..+..++.+..+|+.+|.+++++.++|+...++..++.+. +|++|+|+|+|
T Consensus 43 ~~~~Fn~HPlLM~~Gfi~l~geAIL~yr~~~~~k~~~K~iH~~L~~lA~~l~vvGl~avfk~hn~~~~-~nfySlHSWlG 121 (232)
T PLN02680 43 KDLIFNVHPVLMVIGLVLLNGEAMLAYKTVPGTKNLKKLVHLTLQFLAFCLSLIGVWAALKFHNEKGI-DNFYSLHSWLG 121 (232)
T ss_pred CcceEechHHHHHHHHHHHHHHHHhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccccCc-cccccHHHHHH
Confidence 45689999999999999999999999998887667788999999999999999999998887765443 68999999999
Q ss_pred HHHHHHHHHHHHHhh---cccCCCCCCcccccchhHHHHHHHHHHHHHHHHHhhhhc
Q 019892 232 IFILVLSILQILAFF---LRPSKDSKFRRFWNWYHHWFGRLALFFASVNIVLGIQIG 285 (334)
Q Consensus 232 ~~~~~l~~~Q~~~g~---~r~~~~~~~r~~~~~~H~~~G~~~~~lg~~~i~~G~~~~ 285 (334)
++++++..+|.+.|+ +.|....+.|+...++|+++|+++++++++++.+|+.+.
T Consensus 122 l~t~iL~~lQ~~~Gf~~f~~P~~~~~~R~~~~p~H~~~G~~if~LaiaT~~lG~~Ek 178 (232)
T PLN02680 122 LACLFLFSLQWAAGFVTFWYPGGSRNSRASLLPWHVFFGIYIYALAVATATTGILEK 178 (232)
T ss_pred HHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999996 467765556777779999999999999999999998763
No 13
>cd08762 Cyt_b561_CYBASC3 Vertebrate cytochrome b(561), CYBASC3 gene product. Cytochrome b ascorbate-dependent 3, as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=99.84 E-value=5.2e-21 Score=163.12 Aligned_cols=131 Identities=21% Similarity=0.236 Sum_probs=115.2
Q ss_pred chhhhhHHHHHHHHHHHHhhhhhhhhhccC---CCChhhhhhhHHHHHHHHHHHHHHhheeeeccccccCCCCcccchhh
Q 019892 154 REKKNHGALGMIGWGIILPVGAIIPRYFKH---KDPLWYYLHAIIQLVGFIFGLATVLLGIQLYNKLNVKNANISAHRGI 230 (334)
Q Consensus 154 ~~~~~Hg~lm~~aw~~l~p~gil~aR~~k~---~~~~w~~~H~~~q~~~~~~~i~g~~l~~~~~~~~~~~~~~~~~H~~l 230 (334)
+.+++|+++|.+++.+|..+||++.|..++ .+..|+.+|..+|.+++++.++|+..++...++.+. +|++|+|+++
T Consensus 33 ~~Fn~HP~lMv~Gfi~L~geAiL~Yr~~~~~~~~k~~~K~~H~~L~~~Al~~~vvGl~avf~~hn~~~~-~nlySlHSWl 111 (179)
T cd08762 33 KNFNWHPVLMVTGMVVLYGNAALVYRIPLTWGGPKLPWKLLHAGLLLLAFILTVIGLCAVFNFHNVHHT-ANLYSLHSWV 111 (179)
T ss_pred CceeehHHHHHHHHHHHHHHHHHhhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccccCc-cchhhHHHHH
Confidence 489999999999999999999999996653 245678999999999999999999999987776443 6899999999
Q ss_pred hHHHHHHHHHHHHHhhc---ccCCCCCCcccccchhHHHHHHHHHHHHHHHHHhhhhc
Q 019892 231 GIFILVLSILQILAFFL---RPSKDSKFRRFWNWYHHWFGRLALFFASVNIVLGIQIG 285 (334)
Q Consensus 231 G~~~~~l~~~Q~~~g~~---r~~~~~~~r~~~~~~H~~~G~~~~~lg~~~i~~G~~~~ 285 (334)
|++++++..+|.+.|++ .|......|....++|+++|+++++++++++.+|+.+.
T Consensus 112 Gl~t~~Lf~lQ~~~Gf~~f~~p~~~~~~ra~~~p~H~~~G~~if~Laiat~~lGl~ek 169 (179)
T cd08762 112 GICTVALFTCQWVMGFTSFLLPWAPMWLRALVKPIHVFFGAMILVLSIASCISGINEK 169 (179)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999963 56555567888899999999999999999999998864
No 14
>cd08765 Cyt_b561_CYBRD1 Vertebrate cytochrome b(561), CYBRD1 gene product. Duodenal cytochrome b or ferric-chelate reductase 3, a cytochrome b(561), as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. This protein is expressed at the brush border of duodenal enterocytes and may play a role in the uptake of dietary Fe(3+), facilitating its transport into the mucosal cells. It may also be involved in the recycling of extracellular ascorbate in erythrocyte membranes, and act as a ferrireductase in epithelial cells of the respiratory system. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-me
Probab=99.84 E-value=7.2e-21 Score=159.24 Aligned_cols=132 Identities=22% Similarity=0.237 Sum_probs=115.1
Q ss_pred cchhhhhHHHHHHHHHHHHhhhhhhhhhccC---CCChhhhhhhHHHHHHHHHHHHHHhheeeeccccccCCCCcccchh
Q 019892 153 SREKKNHGALGMIGWGIILPVGAIIPRYFKH---KDPLWYYLHAIIQLVGFIFGLATVLLGIQLYNKLNVKNANISAHRG 229 (334)
Q Consensus 153 ~~~~~~Hg~lm~~aw~~l~p~gil~aR~~k~---~~~~w~~~H~~~q~~~~~~~i~g~~l~~~~~~~~~~~~~~~~~H~~ 229 (334)
...+++|+.||++++.++...+|++.|..+. .++.+..+|+.+|.+++++.++|+...+...++.+ .+|++|+|++
T Consensus 9 ~~~Fn~HPlLm~~Gfi~l~geAiL~yr~~~~~~~~k~~~k~iH~~L~~~a~~~~i~Gl~avf~~hn~~~-~~~fySlHSw 87 (153)
T cd08765 9 AAEFNWHPVLMVIGFIFIQGIAIIVYRLPWTWKCSKLLMKLIHAGLHILAFILAIISVVAVFVFHNAKN-IPNMYSLHSW 87 (153)
T ss_pred CCeeechHHHHHHHHHHHHHHHHHHhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHccccC-CCccccHHHH
Confidence 4589999999999999999999999986542 24567899999999999999999999888766543 3689999999
Q ss_pred hhHHHHHHHHHHHHHhh---cccCCCCCCcccccchhHHHHHHHHHHHHHHHHHhhhhc
Q 019892 230 IGIFILVLSILQILAFF---LRPSKDSKFRRFWNWYHHWFGRLALFFASVNIVLGIQIG 285 (334)
Q Consensus 230 lG~~~~~l~~~Q~~~g~---~r~~~~~~~r~~~~~~H~~~G~~~~~lg~~~i~~G~~~~ 285 (334)
+|++++++..+|.+.|+ +.|......|....++|+++|+++++|+++++.+|+.+.
T Consensus 88 lGl~t~~l~~lQ~~~Gf~~f~~P~~~~~~r~~~~p~H~~~G~~i~~Lai~t~~lG~~ek 146 (153)
T cd08765 88 VGLAAVILYPLQLVLGISVYLLPVAPVRLRAALMPLHVYSGLFIFGTVIATALMGITEK 146 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999996 367655567888899999999999999999999999764
No 15
>cd08763 Cyt_b561_CYB561 Vertebrate cytochrome b(561), CYB561 gene product. Cytochrome b(561), as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=99.83 E-value=1.9e-20 Score=155.74 Aligned_cols=131 Identities=20% Similarity=0.271 Sum_probs=115.3
Q ss_pred chhhhhHHHHHHHHHHHHhhhhhhhhhccCC-CChhhhhhhHHHHHHHHHHHHHHhheeeeccccccCCCCcccchhhhH
Q 019892 154 REKKNHGALGMIGWGIILPVGAIIPRYFKHK-DPLWYYLHAIIQLVGFIFGLATVLLGIQLYNKLNVKNANISAHRGIGI 232 (334)
Q Consensus 154 ~~~~~Hg~lm~~aw~~l~p~gil~aR~~k~~-~~~w~~~H~~~q~~~~~~~i~g~~l~~~~~~~~~~~~~~~~~H~~lG~ 232 (334)
..+++|+.+|.+++.+++..++++.|..+.. ++...++|+.+|.+++++.++|+...+...++.+ .+|++|.|+++|+
T Consensus 5 ~~Fn~HP~lm~~G~i~l~geaiL~~~~~~~~~k~~~k~~H~~L~~la~~~~~~Gl~av~~~h~~~~-~~hf~SlHswlGl 83 (143)
T cd08763 5 LQFNVHPLCMVLGLVFLCGEALLVYRVFRNETKRSTKILHGLLHIMALVISLVGLVAVFDYHQANG-YPDMYSLHSWCGI 83 (143)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHccccC-CCccccHHHHHHH
Confidence 4899999999999999999999999987743 4566789999999999999999999887666543 4689999999999
Q ss_pred HHHHHHHHHHHHhh---cccCCCCCCcccccchhHHHHHHHHHHHHHHHHHhhhhc
Q 019892 233 FILVLSILQILAFF---LRPSKDSKFRRFWNWYHHWFGRLALFFASVNIVLGIQIG 285 (334)
Q Consensus 233 ~~~~l~~~Q~~~g~---~r~~~~~~~r~~~~~~H~~~G~~~~~lg~~~i~~G~~~~ 285 (334)
+++++..+|.+.|+ +.|....+.|..++++|+++|+++++++++++.+|+...
T Consensus 84 ~t~~L~~lQ~~~G~~~f~~P~~~~~~r~~~~p~H~~~G~~~f~la~~t~~lG~~ek 139 (143)
T cd08763 84 LTFVLYFLQWLIGFSFFLFPGASFTLRSQYKPLHEFFGRALFLSSVGTSLLGLTEK 139 (143)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999995 467766667889999999999999999999999998753
No 16
>PF03351 DOMON: DOMON domain; InterPro: IPR005018 The DOMON domain is an 110-125 residue long domain which has been identified in the physiologically important enzyme dopamine beta-monooxygenase and in several other secreted and transmembrane proteins from both plants and animals. It has been named after DOpamine beta-MOnooxygenase N-terminal domain. The DOMON domain can be found in one to four copies and in association with other domains, such as the Cu-ascorbate dependent monooxygenase domain, the epidermal growth factor domain, the trypsin inhibitor-like domain (TIL), the SEA domain and the Reelin domain. The architectures of the DOMON domain proteins strongly suggest a function in extracellular adhesion []. The sequence conservation is predominantly centred around patches of hydrophobic residues. The secondary structure prediction of the DOMON domain points to an all-beta-strand fold with seven or eight core strands supported by a buried core of conserved hydrophobic residues. There is a chraracteristic motif with two small positions (Gly or Ser) corresponding to a conserved turn immediately C-terminal to strand three. It has been proposed that the DOMON domain might form a beta-sandwich structure, with the strands distributed into two beta sheets as is seen in many extracellular adhesion domains such as the immunoglobulin, fibronectin type III, cadherin and PKD domains [].
Probab=99.79 E-value=2.3e-18 Score=140.58 Aligned_cols=110 Identities=25% Similarity=0.463 Sum_probs=90.6
Q ss_pred ccceEEEEEeC-CCcEEEEEEEEcC-CCcEEEEEECCCCCCCCCcEEEEEEcCCCCeEEEEEE-eecccccccccC-CCC
Q 019892 5 NQHSLLQYAQR-DDHVMTIILSAIY-TTGWVGMGFSKDGMMAGSSAMVGWFNKKGQPRIKQYY-LQGTRSSQVIHD-KGE 80 (334)
Q Consensus 5 ~~~~~l~W~~~-~~~~i~f~l~a~~-~~gWvaiGfs~~~~M~gsd~vI~~~~~~G~~~v~~~~-~~g~~~p~v~~~-~~~ 80 (334)
++.|.|+|+.. +++.|+|+++++. +.||+|+|||+++.|.++|+++|+.+ +|.+.+.++| ..++.+|..+.. +.+
T Consensus 2 ~~~~~l~w~~~~~~~~i~~~l~~~~~~~~w~aiGfs~~~~M~~~Dvv~~~~~-~~~~~v~d~~~~~~~~~p~~d~~~~~~ 80 (124)
T PF03351_consen 2 DCNFSLSWTVDGDNNTIEFELTGPANTNGWVAIGFSDDGGMGGSDVVVCWVD-DGKVYVQDYYSTGGYGPPTVDDQGSQD 80 (124)
T ss_pred CceEEEEEEEECCCCEEEEEEEeccCCCCEEEEEEccccCCCCCcEEEEEEc-CCceeEEEeeccCcccceeeccccCCc
Confidence 57899999964 5567999999873 38999999999889999999999998 6999999999 899998877753 233
Q ss_pred ccccCCCceEEEeCcEEEEEEEEecCC---------CCCcccEEEccC
Q 019892 81 LPLTNVPPVVAIHGAMIYMAFQLKFEN---------HLRQQPIILAFG 119 (334)
Q Consensus 81 l~~~~~~~~~~~~~g~~~~~F~r~~~~---------~~~~~~~IwA~G 119 (334)
+++.. ..++++.++|+|+|+++. .+.++++|||+|
T Consensus 81 ~~~~~----~~~~~g~~~~~F~R~l~t~d~~d~~l~~~~~~~~i~A~G 124 (124)
T PF03351_consen 81 IQLLS----GSYSNGTTTCSFTRPLNTGDSQDYDLDSNGTYYVIWAYG 124 (124)
T ss_pred EEEEE----EEEECCEEEEEEEEEccCCCCCccEecCCCcEEEEEEeC
Confidence 55443 257899999999999864 246789999987
No 17
>KOG1619 consensus Cytochrome b [Energy production and conversion]
Probab=99.77 E-value=1.4e-18 Score=152.67 Aligned_cols=134 Identities=19% Similarity=0.273 Sum_probs=118.8
Q ss_pred ccchhhhhHHHHHHHHHHHHhhhhhhhhhccCC-CChhhhhhhHHHHHHHHHHHHHHhheeeeccccccCCCCcccchhh
Q 019892 152 SSREKKNHGALGMIGWGIILPVGAIIPRYFKHK-DPLWYYLHAIIQLVGFIFGLATVLLGIQLYNKLNVKNANISAHRGI 230 (334)
Q Consensus 152 ~~~~~~~Hg~lm~~aw~~l~p~gil~aR~~k~~-~~~w~~~H~~~q~~~~~~~i~g~~l~~~~~~~~~~~~~~~~~H~~l 230 (334)
.+..+++|+++|+++|.++--+++++.|.+|.. ++.-..+|..+|+.+++++++|+...+...+..+. .++++.|+|+
T Consensus 51 ~~~~fnlHP~lMviGfI~l~GeAiL~YR~~r~~~k~~~KliH~~LH~~Alvl~i~gl~avf~~hn~~~i-~NfySLHSWl 129 (245)
T KOG1619|consen 51 PNKEFNLHPVLMVIGFIYLQGEAILIYRVFRYTSKKVSKLIHLGLHIIALVLAIIGLCAVFDSHNLVGI-ANFYSLHSWL 129 (245)
T ss_pred cchhcCcchHHHHHHHHHhccceeeeeehhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCc-cceeeHHHHH
Confidence 478899999999999999999999999997753 45567899999999999999999998887776543 4799999999
Q ss_pred hHHHHHHHHHHHHHhh---cccCCCCCCcccccchhHHHHHHHHHHHHHHHHHhhhhcc
Q 019892 231 GIFILVLSILQILAFF---LRPSKDSKFRRFWNWYHHWFGRLALFFASVNIVLGIQIGY 286 (334)
Q Consensus 231 G~~~~~l~~~Q~~~g~---~r~~~~~~~r~~~~~~H~~~G~~~~~lg~~~i~~G~~~~~ 286 (334)
|+.++++..+|.+.|| +.|....+.|....++|+.+|..+++++++|+.+|+.+..
T Consensus 130 Gl~~v~ly~~Q~v~GF~tfl~pg~~~~~Rs~lmP~H~~~Gl~~f~lai~ta~~Gl~ek~ 188 (245)
T KOG1619|consen 130 GLCVVILYSLQWVFGFFTFLFPGSPESYRSRLMPWHVFLGLAIFILAIVTALTGLLEKL 188 (245)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCccHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999996 4677777889999999999999999999999999996543
No 18
>cd00241 CDH_cytochrome Cellobiose dehydrogenase (CellobioseDH), cytochrome domain; This extracellular fungal oxidoreductase degrades both lignin and cellulose. It is a hemoflavoenzyme that is comprised of a b-type cytochrome domain linked to a large flavodehydrogenase domain. The 2 domains can be separated proteolytically. The cytochrome domain folds as a beta sandwich and complexes a heme molecule.
Probab=99.42 E-value=6.8e-12 Score=108.57 Aligned_cols=123 Identities=19% Similarity=0.300 Sum_probs=90.0
Q ss_pred cEEEEEEEEcCCCcEEEEEECCCCCCCCCcEEEEEEcCCCCeEEEEEEeecccccccccCCCCccccCCCceEEEeCcEE
Q 019892 18 HVMTIILSAIYTTGWVGMGFSKDGMMAGSSAMVGWFNKKGQPRIKQYYLQGTRSSQVIHDKGELPLTNVPPVVAIHGAMI 97 (334)
Q Consensus 18 ~~i~f~l~a~~~~gWvaiGfs~~~~M~gsd~vI~~~~~~G~~~v~~~~~~g~~~p~v~~~~~~l~~~~~~~~~~~~~g~~ 97 (334)
++++++|++|.+.||+|+|++ ++|.++.++|+|++++ +++++.|+.+||.+|++...+-.++++.++ ..++++.
T Consensus 40 ~d~i~qi~aP~~~gW~gls~G--g~M~~~~L~vaw~~g~-~Vt~S~R~atg~~~P~~y~g~a~~t~L~gs---~vn~t~~ 113 (184)
T cd00241 40 TEFIGELVAPRASGWIGLALG--GAMTNSLLLVAWPNGN-QIVSSTRYATGYTLPDAYTGPATITQLPSS---SVNSTHW 113 (184)
T ss_pred CCEEEEEeCcCCCCeEEEeec--ccCCCCeEEEEEcCCC-eEEEeEEEecCccCCCccCCCceEEECCCC---cEeCCEE
Confidence 589999999988999999996 6999999999999754 599999999999999765433235555433 4677776
Q ss_pred EEEEE----EecC-----CCCCcccEEEccCC---CCCC--CCCcccccCCCceeEeecCCCc
Q 019892 98 YMAFQ----LKFE-----NHLRQQPIILAFGS---RYPK--HFHLTHHVDKRTIMFDFSGGSS 146 (334)
Q Consensus 98 ~~~F~----r~~~-----~~~~~~~~IwA~G~---~~~~--~~~l~~H~~~g~~~ldL~~g~~ 146 (334)
+..|+ ...+ +......++||.++ .+|+ +..|.+|+..|.+.+||..+..
T Consensus 114 t~~~rC~nC~~W~~gg~~~~t~~~~~~wA~~~~~~~~p~~~~a~i~~Hd~~G~f~~dl~~A~~ 176 (184)
T cd00241 114 KLVFRCQNCTSWNNGGGIDPTSQGVLAWAFSNVAVDDPSDPQSTFSEHTDFGFFGINLSDAQS 176 (184)
T ss_pred EEEEEeCCCcccCCCCccCcCCCceEEEEECCCCCCCCCCcccCCceecCCcceeEechhccc
Confidence 65552 2222 11223378899853 2332 5779999988999999985433
No 19
>PF10348 DUF2427: Domain of unknown function (DUF2427); InterPro: IPR018825 This entry represents the N-terminal region of a family of proteins conserved in fungi. Several of these proteins are annotated as being Ftp1 but this could not be confirmed. Their function is not known.
Probab=99.33 E-value=4e-12 Score=100.51 Aligned_cols=91 Identities=20% Similarity=0.266 Sum_probs=77.8
Q ss_pred ccccchhhhhHHHHHHHHHHHHhhhhhhhhhccCCCChhhhhhhHHHHHHHHHHHHHHhheeeeccccccCCCCcccchh
Q 019892 150 YVSSREKKNHGALGMIGWGIILPVGAIIPRYFKHKDPLWYYLHAIIQLVGFIFGLATVLLGIQLYNKLNVKNANISAHRG 229 (334)
Q Consensus 150 ~~~~~~~~~Hg~lm~~aw~~l~p~gil~aR~~k~~~~~w~~~H~~~q~~~~~~~i~g~~l~~~~~~~~~~~~~~~~~H~~ 229 (334)
+..+....+|+++|.++|++++|+|++..+ .|+ +.|..+|+++++++++|+.++....++.++ -.+++.|.+
T Consensus 12 ~~~~~~l~~Hi~lm~la~~il~Pi~lvL~~-~~s------r~~~~~q~~~~~l~~~g~~~g~~~~~~~p~-lyp~n~H~k 83 (105)
T PF10348_consen 12 SPHRSALYAHIVLMTLAWVILYPIGLVLGN-ARS------RWHLPVQTVFLVLMILGLFLGSVYNGSTPD-LYPNNAHGK 83 (105)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHH-ccc------hHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-CCCCCHHHH
Confidence 347888999999999999999999998764 454 349999999999999999999887666543 136899999
Q ss_pred hhHHHHHHHHHHHHHhhcc
Q 019892 230 IGIFILVLSILQILAFFLR 248 (334)
Q Consensus 230 lG~~~~~l~~~Q~~~g~~r 248 (334)
+|.++++++++|++.|+++
T Consensus 84 ~g~il~~l~~~q~~~gv~~ 102 (105)
T PF10348_consen 84 MGWILFVLMIVQVILGVIL 102 (105)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999875
No 20
>KOG3568 consensus Dopamine beta-monooxygenase [Amino acid transport and metabolism]
Probab=98.85 E-value=1.1e-08 Score=98.03 Aligned_cols=110 Identities=18% Similarity=0.297 Sum_probs=84.1
Q ss_pred ccceEEEEEe-CCCcEEEEEEEEcCCCcEEEEEECCCCCCCCCcEEEEEEcCCCCeEEEEEEeecccccccccCCCCccc
Q 019892 5 NQHSLLQYAQ-RDDHVMTIILSAIYTTGWVGMGFSKDGMMAGSSAMVGWFNKKGQPRIKQYYLQGTRSSQVIHDKGELPL 83 (334)
Q Consensus 5 ~~~~~l~W~~-~~~~~i~f~l~a~~~~gWvaiGfs~~~~M~gsd~vI~~~~~~G~~~v~~~~~~g~~~p~v~~~~~~l~~ 83 (334)
.+.+.|+|.+ ...+.|.|+|+.. +.+|++||||+.+.|.+||+++.|.+ .+...+.|+|.+....-..|.+|+ .++
T Consensus 42 e~~~~lsW~vdy~~q~i~F~l~~~-t~~~v~fGfSdrG~lanaDivv~~n~-g~~~~~~DayTn~d~qi~~D~QQD-yql 118 (603)
T KOG3568|consen 42 EGKYWLSWSVDYRGQQIAFRLQVR-TAGYVGFGFSDRGALANADIVVGGNA-GGRPYLQDAYTNADGQIKKDAQQD-YQL 118 (603)
T ss_pred CCcEEEEEeeccccceeEEEEEec-cCCEEEEecCCcCCcccCcEEEEecc-CCchhhhhhhcCCCCceecchhhh-hHH
Confidence 4689999994 5668999999997 88999999999899999999999864 456889999986555444555554 555
Q ss_pred cCCCceEEEeCcEEEEEEEEecCC--------CCCcccEEEccCCC
Q 019892 84 TNVPPVVAIHGAMIYMAFQLKFEN--------HLRQQPIILAFGSR 121 (334)
Q Consensus 84 ~~~~~~~~~~~g~~~~~F~r~~~~--------~~~~~~~IwA~G~~ 121 (334)
... ..+...+.+.|+|++.+ .+++++++||.-..
T Consensus 119 l~~----~e~~~~~~i~frRkl~TCDp~Dy~i~dgTv~vv~a~~ee 160 (603)
T KOG3568|consen 119 LYA----MENSTHTIIEFRRKLHTCDPNDYSITDGTVRVVWAYLEE 160 (603)
T ss_pred Hhh----hccCCccEEEEecccCcCCccceeccCCeEEEEEEEecc
Confidence 432 23445677899999874 25689999997443
No 21
>PF04526 DUF568: Protein of unknown function (DUF568); InterPro: IPR017214 This group represents an uncharacterised conserved protein.
Probab=98.26 E-value=1.5e-05 Score=62.36 Aligned_cols=93 Identities=17% Similarity=0.220 Sum_probs=65.5
Q ss_pred CCCCcEEEEEEcCC-CCeEEEEEEeecccccccccCCCCccccCCCceEEEeCcE--EEEEEEEecCCCCCcccEEEccC
Q 019892 43 MAGSSAMVGWFNKK-GQPRIKQYYLQGTRSSQVIHDKGELPLTNVPPVVAIHGAM--IYMAFQLKFENHLRQQPIILAFG 119 (334)
Q Consensus 43 M~gsd~vI~~~~~~-G~~~v~~~~~~g~~~p~v~~~~~~l~~~~~~~~~~~~~g~--~~~~F~r~~~~~~~~~~~IwA~G 119 (334)
|.|+.++|++.+++ |.+.+..|.+++|.++ .+++.+.+.-...++++.++. |+.+.+.+.+ .+..+.+|..|
T Consensus 1 M~GtqALvAf~~~~~G~~~v~T~~i~sy~~~---l~~~~lsf~v~~lsae~~~~~~~IfAtl~Lp~n--~t~vnhVWQ~G 75 (101)
T PF04526_consen 1 MVGTQALVAFKNSNGGSVTVYTYNITSYSPS---LQPGPLSFDVSDLSAEYSGGEMTIFATLKLPGN--STSVNHVWQVG 75 (101)
T ss_pred CCCceEEEEEeCCCCceEEEEEEeecccccc---cccccccccccceEeEEeCCEEEEEEEEEcCCC--CcEEEEEeCcC
Confidence 99999999999988 8899999999999862 233445543233345667774 4555555544 67899999999
Q ss_pred CCCCCCCCcccccCC-----CceeEee
Q 019892 120 SRYPKHFHLTHHVDK-----RTIMFDF 141 (334)
Q Consensus 120 ~~~~~~~~l~~H~~~-----g~~~ldL 141 (334)
+... ++.+..|+.. +..+|||
T Consensus 76 ~~v~-gg~p~~H~~~~~Nl~S~gtldl 101 (101)
T PF04526_consen 76 PSVQ-GGSPQPHPTSGANLQSKGTLDL 101 (101)
T ss_pred CccC-CCccccCCCCCccccceEEecC
Confidence 9742 6788899753 3445554
No 22
>PF13301 DUF4079: Protein of unknown function (DUF4079)
Probab=97.20 E-value=0.0034 Score=54.21 Aligned_cols=91 Identities=18% Similarity=0.092 Sum_probs=56.2
Q ss_pred hhhhHHHHHHHHHHHHHHhheeeeccccccCCCCcccchhhhHHHHHHHHHHHHHhh-cccCCCCCCcccccchhHHHHH
Q 019892 190 YLHAIIQLVGFIFGLATVLLGIQLYNKLNVKNANISAHRGIGIFILVLSILQILAFF-LRPSKDSKFRRFWNWYHHWFGR 268 (334)
Q Consensus 190 ~~H~~~q~~~~~~~i~g~~l~~~~~~~~~~~~~~~~~H~~lG~~~~~l~~~Q~~~g~-~r~~~~~~~r~~~~~~H~~~G~ 268 (334)
..|.-+-...+.++..+..-+....-...+ +-+.++|.+.|+++..++.++....- +.++ +++.++..|.+++.
T Consensus 81 ~~H~~~g~~ll~~~~L~~lGG~~~~~~~~~-~lf~spH~~~Gl~~~~L~~~s~al~~~i~~g----~~~~~R~lHi~lN~ 155 (175)
T PF13301_consen 81 DRHYRLGFALLAFMGLGALGGQLGTYRQNG-KLFWSPHLWAGLAVVGLMAFSAALVPQIQKG----NRPWARRLHIYLNS 155 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHcchHHHHHcCC-CCccCchHHHHHHHHHHHHHHHHHHHHHccC----CchhHHHHHHHHHH
Confidence 456554444444444333333222111111 13778899999999988888876542 2222 24456679999999
Q ss_pred HHHHHHHHHHHHhhhhc
Q 019892 269 LALFFASVNIVLGIQIG 285 (334)
Q Consensus 269 ~~~~lg~~~i~~G~~~~ 285 (334)
+++++-.++..+|....
T Consensus 156 ~~l~Lf~~q~itG~~il 172 (175)
T PF13301_consen 156 LALLLFAWQAITGWRIL 172 (175)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999988754
No 23
>cd08554 Cyt_b561 Eukaryotic cytochrome b(561). Cytochrome b(561) is a family of endosomal or secretory vesicle-specific electron transport proteins. They are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments. This is an exclusively eukaryotic family. Members of the prokaryotic cytochrome b561 family are not deemed homologous.
Probab=96.88 E-value=0.0081 Score=49.27 Aligned_cols=94 Identities=20% Similarity=0.367 Sum_probs=65.2
Q ss_pred hhhhhHHHHHHHHHHHHHHhheeeeccccccCCCCcccchhhhHHHHHHHHHHHHHhhcccCCCCCCcccccchhHHHHH
Q 019892 189 YYLHAIIQLVGFIFGLATVLLGIQLYNKLNVKNANISAHRGIGIFILVLSILQILAFFLRPSKDSKFRRFWNWYHHWFGR 268 (334)
Q Consensus 189 ~~~H~~~q~~~~~~~i~g~~l~~~~~~~~~~~~~~~~~H~~lG~~~~~l~~~Q~~~g~~r~~~~~~~r~~~~~~H~~~G~ 268 (334)
|..|..++++++++...--++.....+...+ ......|..+.++.+++.++-...++..+. .+.++-+...|.++|.
T Consensus 2 f~~H~~lm~~g~~~l~~~~il~~r~~~~~~~-~~~~~~H~~l~~l~~~~~~~G~~~~~~~~~--~~~~~h~~s~Hs~lGl 78 (131)
T cd08554 2 FNWHPLLMVIGFVFLMGEALLVYRVFRLLTK-RALKLLHAILHLLAFVLGLVGLLAVFLFHN--AGGIANLYSLHSWLGL 78 (131)
T ss_pred CCccHHHHHHHHHHHHHHHHHHhccccccch-hHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--ccCcccchhHHHHHHH
Confidence 4679999999976544333333322222111 123568999999888888877777765433 2234556778999999
Q ss_pred HHHHHHHHHHHHhhhhc
Q 019892 269 LALFFASVNIVLGIQIG 285 (334)
Q Consensus 269 ~~~~lg~~~i~~G~~~~ 285 (334)
++++|..+|...|+...
T Consensus 79 ~~~~l~~~q~~~G~~~~ 95 (131)
T cd08554 79 ATVLLFLLQFLSGFVLF 95 (131)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999997775
No 24
>PF03188 Cytochrom_B561: Eukaryotic cytochrome b561; InterPro: IPR004877 Cytochrome b561 is a secretory vesicle-specific electron transport protein []. It is an integral membrane protein, that binds two haem groups non-covalently. This entry represents the eukaryotic family. Members of the 'bacterial cytochrome b561' family can be found in IPR011577 from INTERPRO.; GO: 0016021 integral to membrane
Probab=96.82 E-value=0.015 Score=47.95 Aligned_cols=93 Identities=18% Similarity=0.347 Sum_probs=62.7
Q ss_pred hhhHHHHHHHHHHH-HHHhheeeec-cccccCCCCcccchhhhHHHHHHHHHHHHHhhcccCCCCCCcccccchhHHHHH
Q 019892 191 LHAIIQLVGFIFGL-ATVLLGIQLY-NKLNVKNANISAHRGIGIFILVLSILQILAFFLRPSKDSKFRRFWNWYHHWFGR 268 (334)
Q Consensus 191 ~H~~~q~~~~~~~i-~g~~l~~~~~-~~~~~~~~~~~~H~~lG~~~~~l~~~Q~~~g~~r~~~~~~~r~~~~~~H~~~G~ 268 (334)
+|..++.+++.+.. .|+.. .... ............|.++-++.+++.++=.+..+.... .+.++-++-.|.++|.
T Consensus 1 ~H~~lm~~~f~~l~~~~il~-~r~~~~~~~~~~~~~~~H~~lq~l~~~~~~~G~~~~~~~~~--~~~~~h~~s~H~~lG~ 77 (137)
T PF03188_consen 1 WHPILMTIGFVFLMPEGILA-ARYNPFRRKSRKWWFRIHWILQVLALVFAIIGFVAIFINKN--RNGKPHFKSWHSILGL 77 (137)
T ss_pred CcHHHHHHHHHHHHHHHHHH-HHHhhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhcc--ccCCCCCCCchhhhhH
Confidence 49999999877655 34433 2221 111111234578999988888777776666654322 2234566789999999
Q ss_pred HHHHHHHHHHHHhhhhcc
Q 019892 269 LALFFASVNIVLGIQIGY 286 (334)
Q Consensus 269 ~~~~lg~~~i~~G~~~~~ 286 (334)
+++++...|...|+....
T Consensus 78 ~~~~l~~~Q~~~G~~~~~ 95 (137)
T PF03188_consen 78 ATFVLALLQPLLGFFRFF 95 (137)
T ss_pred HHHHHHHHHHHHHHHHHc
Confidence 999999999999988754
No 25
>cd08760 Cyt_b561_FRRS1_like Eukaryotic cytochrome b(561), including the FRRS1 gene product. Cytochrome b(561), as found in eukaryotes, similar to and including the human FRRS1 gene product (ferric-chelate reductase 1), also called SDR-2 (stromal cell-derived receptor 2). This family comprises a variety of domain architectures, many of which contain dopamine beta-monooxygenase (DOMON) domains. The protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=96.64 E-value=0.022 Score=49.85 Aligned_cols=127 Identities=15% Similarity=0.098 Sum_probs=83.9
Q ss_pred CceeEeecCCCccccccccchhhhhHHHHHHHHHHHHhhhhhhhhhccCCCChhhhhhhHHHHHHHHHHH-HHHhheeee
Q 019892 135 RTIMFDFSGGSSSVLYVSSREKKNHGALGMIGWGIILPVGAIIPRYFKHKDPLWYYLHAIIQLVGFIFGL-ATVLLGIQL 213 (334)
Q Consensus 135 g~~~ldL~~g~~~~~~~~~~~~~~Hg~lm~~aw~~l~p~gil~aR~~k~~~~~w~~~H~~~q~~~~~~~i-~g~~l~~~~ 213 (334)
++.++|+++|++++......... ..... .....++.|..++.++..+.. +|..++-..
T Consensus 3 ~~~~l~~~~g~~~~~~~~~~~~~--------------------~~~~~-~~~~~~~~Hg~lm~iaw~~l~p~gil~ar~~ 61 (191)
T cd08760 3 SSYSLDLASGTSSSGGSPFLLPN--------------------GSSVG-SSDTLIKAHGVLMAIAWGILMPIGALLARYF 61 (191)
T ss_pred cceEEEeccceeccCCCcccccc--------------------ccccc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56788999888776433211111 11111 124567999999999876554 565554221
Q ss_pred ccccccCCCCcccchhhhHHHHHHHHHHHHHhhcccCCCCCCcccccchhHHHHHHHHHHHHHHHHHhhhhccCC
Q 019892 214 YNKLNVKNANISAHRGIGIFILVLSILQILAFFLRPSKDSKFRRFWNWYHHWFGRLALFFASVNIVLGIQIGYAG 288 (334)
Q Consensus 214 ~~~~~~~~~~~~~H~~lG~~~~~l~~~Q~~~g~~r~~~~~~~r~~~~~~H~~~G~~~~~lg~~~i~~G~~~~~~~ 288 (334)
....+ .....|..+=++.+++.++-.+.++... .+.+..++-.|.++|.+++++.++|...|+......
T Consensus 62 ~~~~~---~~~~~H~~~q~~~~~~~i~g~~~~~~~~---~~~~~~~~~~H~~lGl~~~~l~~lQ~~~G~~~~~~~ 130 (191)
T cd08760 62 LLGDP---VWFYLHAGLQLLAVLLAIAGFVLGIVLV---QGGGGSLNNAHAILGIIVLALAILQPLLGLLRPHPG 130 (191)
T ss_pred ccCCc---hhHHHHHHHHHHHHHHHHHHHHHHHHhh---ccCCCCCcCcchhhhHHHHHHHHHHHHHHHhcCCCC
Confidence 11111 2446899988888888887777777653 233456778999999999999999999999776543
No 26
>cd08763 Cyt_b561_CYB561 Vertebrate cytochrome b(561), CYB561 gene product. Cytochrome b(561), as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=96.61 E-value=0.032 Score=46.61 Aligned_cols=95 Identities=18% Similarity=0.287 Sum_probs=65.9
Q ss_pred hhhhhhHHHHHHHHHHHHHHhheeeeccccccCCCCcccchhhhHHHHHHHHHHHHHhhcccCCCCCCcccccchhHHHH
Q 019892 188 WYYLHAIIQLVGFIFGLATVLLGIQLYNKLNVKNANISAHRGIGIFILVLSILQILAFFLRPSKDSKFRRFWNWYHHWFG 267 (334)
Q Consensus 188 w~~~H~~~q~~~~~~~i~g~~l~~~~~~~~~~~~~~~~~H~~lG~~~~~l~~~Q~~~g~~r~~~~~~~r~~~~~~H~~~G 267 (334)
=|..|..+|++|+++...-.++.+.......+ ......|.++.++.+++.++-...-+..+.+ +..+-+.-.|.|+|
T Consensus 6 ~Fn~HP~lm~~G~i~l~geaiL~~~~~~~~~k-~~~k~~H~~L~~la~~~~~~Gl~av~~~h~~--~~~~hf~SlHswlG 82 (143)
T cd08763 6 QFNVHPLCMVLGLVFLCGEALLVYRVFRNETK-RSTKILHGLLHIMALVISLVGLVAVFDYHQA--NGYPDMYSLHSWCG 82 (143)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHhcccccccc-chhHHHHHHHHHHHHHHHHHHHHHHHHHccc--cCCCccccHHHHHH
Confidence 46789999999988666544454432221111 1234689999999988877665544433222 23455678999999
Q ss_pred HHHHHHHHHHHHHhhhhc
Q 019892 268 RLALFFASVNIVLGIQIG 285 (334)
Q Consensus 268 ~~~~~lg~~~i~~G~~~~ 285 (334)
.+++++-..|...|+...
T Consensus 83 l~t~~L~~lQ~~~G~~~f 100 (143)
T cd08763 83 ILTFVLYFLQWLIGFSFF 100 (143)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999999997664
No 27
>cd08764 Cyt_b561_CG1275_like Non-vertebrate eumetazoan cytochrome b(561). Cytochrome b(561), as found in non-vertebrate eumetazoans, similar to the Drosophila melanogaster CG1275 gene product. This protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=96.47 E-value=0.037 Score=49.30 Aligned_cols=97 Identities=18% Similarity=0.281 Sum_probs=64.8
Q ss_pred hhhhhhhHHHHHHHHHHHHHHhheeeeccccccCCCCcccchhhhHHHHHHHHHHHHHhhcccCCCCCCcccccchhHHH
Q 019892 187 LWYYLHAIIQLVGFIFGLATVLLGIQLYNKLNVKNANISAHRGIGIFILVLSILQILAFFLRPSKDSKFRRFWNWYHHWF 266 (334)
Q Consensus 187 ~w~~~H~~~q~~~~~~~i~g~~l~~~~~~~~~~~~~~~~~H~~lG~~~~~l~~~Q~~~g~~r~~~~~~~r~~~~~~H~~~ 266 (334)
..|.+|..+|++|+++...--++.+.......+ ......|..+..+.+++.++-...-+-.+.+..+..+-+...|.|+
T Consensus 22 ~~Fn~HP~lM~~Gfi~l~geAiLvyr~~~~~~k-~~~k~~H~~L~~lAl~~~ivGl~avf~~hn~~~~~~~hfySlHSwl 100 (214)
T cd08764 22 LQFNWHPLLMVLGLIFLYGNSILVYRVFRNTRK-KRLKLLHAVLHLLAFILAVIGLKAVFDSHNLAKPPIPNMYSLHSWL 100 (214)
T ss_pred ceEeecHHHHHHHHHHHHHHHHHHhccCccccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCcccchHHHH
Confidence 568999999999987655433344433222211 1133589999999988877664443333333322344556689999
Q ss_pred HHHHHHHHHHHHHHhhhh
Q 019892 267 GRLALFFASVNIVLGIQI 284 (334)
Q Consensus 267 G~~~~~lg~~~i~~G~~~ 284 (334)
|.++++|-..|...|+..
T Consensus 101 Gl~t~~L~~lQ~~~Gf~~ 118 (214)
T cd08764 101 GLTAVILFSLQWVGGFVS 118 (214)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999999999744
No 28
>smart00665 B561 Cytochrome b-561 / ferric reductase transmembrane domain. Cytochrome b-561 recycles ascorbate for the generation of norepinephrine by dopamine-beta-hydroxylase in the chromaffin vesicles of the adrenal gland. It is a transmembrane heme protein with the two heme groups being bound to conserved histidine residues. A cytochrome b-561 homologue, termed Dcytb, is an iron-regulated ferric reductase in the duodenal mucosa. Other homologues of these are also likely to be ferric reductases. SDR2 is proposed to be important in regulating the metabolism of iron in the onset of neurodegenerative disorders.
Probab=96.35 E-value=0.022 Score=46.58 Aligned_cols=95 Identities=24% Similarity=0.393 Sum_probs=64.6
Q ss_pred hhhHHHHHHHHHHH-HHHhheeeeccccccCCCCcccchhhhHHHHHHHHHHHHHhhcccCCCCCCcccccchhHHHHHH
Q 019892 191 LHAIIQLVGFIFGL-ATVLLGIQLYNKLNVKNANISAHRGIGIFILVLSILQILAFFLRPSKDSKFRRFWNWYHHWFGRL 269 (334)
Q Consensus 191 ~H~~~q~~~~~~~i-~g~~l~~~~~~~~~~~~~~~~~H~~lG~~~~~l~~~Q~~~g~~r~~~~~~~r~~~~~~H~~~G~~ 269 (334)
+|..++++++++.. .|..+.-......+ .......|..+.++.+++.++=...++...++. .++.++..|.++|.+
T Consensus 1 ~H~~lm~~~f~~l~p~gil~~r~~~~~~~-~~~~~~~H~~lq~~a~~~~~~g~~~~~~~~~~~--~~~~~~s~H~~lGl~ 77 (129)
T smart00665 1 LHPVLMILGFGFLMGEAILVARPLTRFLS-KPTWFLLHVVLQILALVLGVIGLLAIFISHNES--GIANFYSLHSWLGLA 77 (129)
T ss_pred CcHHHHHHHHHHHHHHHHHHhhhHhhccc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc--CCCCccchhHHHHHH
Confidence 48999999875444 44444321011111 112456799999988888877777776543322 235677899999999
Q ss_pred HHHHHHHHHHHhhhhccCC
Q 019892 270 ALFFASVNIVLGIQIGYAG 288 (334)
Q Consensus 270 ~~~lg~~~i~~G~~~~~~~ 288 (334)
++++...|...|+.....+
T Consensus 78 ~~~l~~~Q~~~G~~~~~~~ 96 (129)
T smart00665 78 AFVLAGLQWLSGFLRPLPP 96 (129)
T ss_pred HHHHHHHHHHHHHHHhcCC
Confidence 9999999999998876554
No 29
>cd08761 Cyt_b561_CYB561D2_like Eukaryotic cytochrome b(561), including the CYB561D2 gene product. Cytochrome b(561), as found in eukaryotes, similar to and including the human CYB561D2 gene product. CYB561D2 is a candidate tumor suppressor. The protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=96.23 E-value=0.02 Score=49.86 Aligned_cols=97 Identities=14% Similarity=0.335 Sum_probs=66.6
Q ss_pred ChhhhhhhHHHHHHHHHHHHHHhheeeecccc--ccCCCCcccchhhhHHHHHHHHHHHHHhhcccCCCCCCcccccchh
Q 019892 186 PLWYYLHAIIQLVGFIFGLATVLLGIQLYNKL--NVKNANISAHRGIGIFILVLSILQILAFFLRPSKDSKFRRFWNWYH 263 (334)
Q Consensus 186 ~~w~~~H~~~q~~~~~~~i~g~~l~~~~~~~~--~~~~~~~~~H~~lG~~~~~l~~~Q~~~g~~r~~~~~~~r~~~~~~H 263 (334)
...|..|..+|.+++++.....++.+...+.. ..+......|.++-.+.+++.++-....+.- ++.+.++-++-.|
T Consensus 18 ~~~f~~Hp~~m~i~~~~l~~~~il~~~~~~~~~~~~~~~~~~~H~~l~~la~~~~~~G~~~~~~~--~~~~~~~hf~s~H 95 (183)
T cd08761 18 TSLFSWHPLLMSLGFLLLMTEALLLLQPTSSLTKLARKTKVRLHWILQLLALLCILAGLVAIYYN--KERNGKPHFTSWH 95 (183)
T ss_pred cceeehhHHHHHHHHHHHHHHHHHHhcCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHh--cccCCCCCccchh
Confidence 45689999999999876665444444322111 1112345789999998888777665444432 2223456677899
Q ss_pred HHHHHHHHHHHHHHHHHhhhh
Q 019892 264 HWFGRLALFFASVNIVLGIQI 284 (334)
Q Consensus 264 ~~~G~~~~~lg~~~i~~G~~~ 284 (334)
.++|.+++++...|...|+..
T Consensus 96 ~~lGl~~~~l~~~Q~~~G~~~ 116 (183)
T cd08761 96 GILGLVTVILIVLQALGGLAL 116 (183)
T ss_pred HHHHHHHHHHHHHHHHHhHHH
Confidence 999999999999999999864
No 30
>PLN02680 carbon-monoxide oxygenase
Probab=96.07 E-value=0.12 Score=46.57 Aligned_cols=93 Identities=18% Similarity=0.331 Sum_probs=60.7
Q ss_pred hhhhhhHHHHHHHHHHHHHHhheeeeccccccCCCCcccchhhhHHHHHHHHHHHHHhhcccCCCCCCcccccchhHHHH
Q 019892 188 WYYLHAIIQLVGFIFGLATVLLGIQLYNKLNVKNANISAHRGIGIFILVLSILQILAFFLRPSKDSKFRRFWNWYHHWFG 267 (334)
Q Consensus 188 w~~~H~~~q~~~~~~~i~g~~l~~~~~~~~~~~~~~~~~H~~lG~~~~~l~~~Q~~~g~~r~~~~~~~r~~~~~~H~~~G 267 (334)
=|.+|..+|++++++...-.++.+......+ ......|..+=.+.+++.++-...- ++.+.+ +.++-+..+|.|+|
T Consensus 46 ~Fn~HPlLM~~Gfi~l~geAIL~yr~~~~~k--~~~K~iH~~L~~lA~~l~vvGl~av-fk~hn~-~~~~nfySlHSWlG 121 (232)
T PLN02680 46 IFNVHPVLMVIGLVLLNGEAMLAYKTVPGTK--NLKKLVHLTLQFLAFCLSLIGVWAA-LKFHNE-KGIDNFYSLHSWLG 121 (232)
T ss_pred eEechHHHHHHHHHHHHHHHHhccccccccc--hhHHHHHHHHHHHHHHHHHHHHHHH-HHhccc-cCccccccHHHHHH
Confidence 4789999999999885544444443222211 1234568877777776665544332 332221 22344556899999
Q ss_pred HHHHHHHHHHHHHhhhh
Q 019892 268 RLALFFASVNIVLGIQI 284 (334)
Q Consensus 268 ~~~~~lg~~~i~~G~~~ 284 (334)
.+++++-..|...|+..
T Consensus 122 l~t~iL~~lQ~~~Gf~~ 138 (232)
T PLN02680 122 LACLFLFSLQWAAGFVT 138 (232)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999999866
No 31
>cd08766 Cyt_b561_ACYB-1_like Plant cytochrome b(561), including the carbon monoxide oxygenase ACYB-1. Cytochrome b(561), as found in plants, similar to the Arabidopsis thaliana ACYB-1 gene product, a cytochrome b561 isoform localized to the tonoplast. This protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), and might be capable of trans-membrane electron transport from intracellular ascorbate to extracellular ferric chelates. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=95.73 E-value=0.15 Score=42.71 Aligned_cols=94 Identities=20% Similarity=0.305 Sum_probs=60.8
Q ss_pred hhhhhhhHHHHHHHHHHHHHHhheeeeccccccCCCCcccchhhhHHHHHHHHHHHHHhhcccCCCCCCcccccchhHHH
Q 019892 187 LWYYLHAIIQLVGFIFGLATVLLGIQLYNKLNVKNANISAHRGIGIFILVLSILQILAFFLRPSKDSKFRRFWNWYHHWF 266 (334)
Q Consensus 187 ~w~~~H~~~q~~~~~~~i~g~~l~~~~~~~~~~~~~~~~~H~~lG~~~~~l~~~Q~~~g~~r~~~~~~~r~~~~~~H~~~ 266 (334)
..|.+|..+|++++++...--++.+......++ .....|.++=++.+++.++-...-+.-+. .+..+-+..+|.|+
T Consensus 6 ~~Fn~HP~lM~~gfi~l~~eAiL~~r~~~~~k~--~~k~iH~~l~~la~~~~vvGl~avf~~~~--~~~~~~~~SlHSwl 81 (144)
T cd08766 6 LIFNVHPVLMVIGFIFLAGEAILAYKTVPGSRE--VQKAVHLTLHLVALVLGIVGIYAAFKFHN--EVGIPNLYSLHSWL 81 (144)
T ss_pred ceeeccHHHHHHHHHHHHHHHHHHhhccccccc--hhHHHHHHHHHHHHHHHHHHHHHHHHHhc--ccCccccccHHHHH
Confidence 468899999999986555434454543222111 23457888877777766555433322222 12234455689999
Q ss_pred HHHHHHHHHHHHHHhhhh
Q 019892 267 GRLALFFASVNIVLGIQI 284 (334)
Q Consensus 267 G~~~~~lg~~~i~~G~~~ 284 (334)
|.+++++-..|...|+..
T Consensus 82 Gl~t~~L~~lQ~~~G~~~ 99 (144)
T cd08766 82 GIGTISLFGLQWLFGFVT 99 (144)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999999999753
No 32
>PF00033 Cytochrom_B_N: Cytochrome b(N-terminal)/b6/petB; InterPro: IPR016174 This entry represents a haem-binding domain with a 4-helical bundle structure that is found in transmembrane di-haem cytochromes. The domain contains four transmembrane helices in an up-and-down bundle, and binds two haem groups in between the helices; three of the four haem-binding residues is conserved between family members. Proteins containing this domain include: N-terminal domain of mitochondrial cytochrome b subunit, in which the domain contains an extra transmembrane linker helix that is absent in plant and cyanobacteria subunits []. Cytochrome b6 subunit of the cytochrome b6f complex, which provides the electronic connection between the photosystems I and II reaction centres of oxygenic photosynthesis, and generates a transmembrane electrochemical proton gradient for adenosine triphosphate synthesis []. Cytochrome gamma subunit of formate dehydrogenase-N (Fdn-N), which acts as a major component of Escherichia coli nitrate respiration []. ; GO: 0022904 respiratory electron transport chain, 0016020 membrane; PDB: 1KQG_C 1KQF_C.
Probab=94.96 E-value=0.082 Score=45.43 Aligned_cols=95 Identities=16% Similarity=0.117 Sum_probs=65.5
Q ss_pred hhhhHHHHHHHHHHHHHHhheee--e-ccccccCCCCcccchhhhHHHHHHHHHHHHHhhcc------------------
Q 019892 190 YLHAIIQLVGFIFGLATVLLGIQ--L-YNKLNVKNANISAHRGIGIFILVLSILQILAFFLR------------------ 248 (334)
Q Consensus 190 ~~H~~~q~~~~~~~i~g~~l~~~--~-~~~~~~~~~~~~~H~~lG~~~~~l~~~Q~~~g~~r------------------ 248 (334)
.+|+..-++-+++.+.|+.+... . .............|..+|++.+++.++..+.++.+
T Consensus 10 ~~Hw~~al~~~~l~~tG~~~~~~~~~~~~~~~~~~~~~~~H~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (188)
T PF00033_consen 10 LLHWLNALLFILLLITGLYLMFPFWWLAGGFPGRQLLRWLHFSLGIVFLALFLLRILWRLFSRRFWKSDDIWFRQIPQYR 89 (188)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-TTGGGGGTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHGGGT---GGGHHHHHSHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcccccccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhHHHHHHHhh
Confidence 56887777667777788877532 1 11111112356899999999999999999988877
Q ss_pred cC--CCCCCcccccchhHHHHHHHHHHHHHHHHHhhhh
Q 019892 249 PS--KDSKFRRFWNWYHHWFGRLALFFASVNIVLGIQI 284 (334)
Q Consensus 249 ~~--~~~~~r~~~~~~H~~~G~~~~~lg~~~i~~G~~~ 284 (334)
.. ++.+.....|...+..-.+++++..+.+.+|+.+
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iTG~~~ 127 (188)
T PF00033_consen 90 LFPRKPPPPSGKYNPLQKLVYWALYLLLLLMAITGLIM 127 (188)
T ss_dssp TT-HHHH----SS-HHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred ccCCCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 1223445678888999999999999999999988
No 33
>cd08762 Cyt_b561_CYBASC3 Vertebrate cytochrome b(561), CYBASC3 gene product. Cytochrome b ascorbate-dependent 3, as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=94.72 E-value=1.1 Score=38.70 Aligned_cols=97 Identities=14% Similarity=0.202 Sum_probs=62.0
Q ss_pred hhhhhhhHHHHHHHHHHHHHHhheeeeccccc-cCCCCcccchhhhHHHHHHHHHHHHHhhcccCCCCCCcccccchhHH
Q 019892 187 LWYYLHAIIQLVGFIFGLATVLLGIQLYNKLN-VKNANISAHRGIGIFILVLSILQILAFFLRPSKDSKFRRFWNWYHHW 265 (334)
Q Consensus 187 ~w~~~H~~~q~~~~~~~i~g~~l~~~~~~~~~-~~~~~~~~H~~lG~~~~~l~~~Q~~~g~~r~~~~~~~r~~~~~~H~~ 265 (334)
..|.+|..+|++++++.-.-.++.+.....+. .+......|..+=.+.+++.++-...-+-.++.. ..+=.-.+|.|
T Consensus 33 ~~Fn~HP~lMv~Gfi~L~geAiL~Yr~~~~~~~~k~~~K~~H~~L~~~Al~~~vvGl~avf~~hn~~--~~~nlySlHSW 110 (179)
T cd08762 33 KNFNWHPVLMVTGMVVLYGNAALVYRIPLTWGGPKLPWKLLHAGLLLLAFILTVIGLCAVFNFHNVH--HTANLYSLHSW 110 (179)
T ss_pred CceeehHHHHHHHHHHHHHHHHHhhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccc--CccchhhHHHH
Confidence 37899999999998876544444444222221 1011346788887777777665554443333221 12222347999
Q ss_pred HHHHHHHHHHHHHHHhhhhc
Q 019892 266 FGRLALFFASVNIVLGIQIG 285 (334)
Q Consensus 266 ~G~~~~~lg~~~i~~G~~~~ 285 (334)
+|.+++++=..|-..|+...
T Consensus 111 lGl~t~~Lf~lQ~~~Gf~~f 130 (179)
T cd08762 111 VGICTVALFTCQWVMGFTSF 130 (179)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998664
No 34
>COG2717 Predicted membrane protein [Function unknown]
Probab=94.53 E-value=0.36 Score=42.71 Aligned_cols=138 Identities=18% Similarity=0.224 Sum_probs=70.9
Q ss_pred HHHHHHHHHHhhhhhhhhhccCCCChhhhhhhHHHHHHHHHHHHHHhheeeecccc--c--cCCCCcccchhhhHHHHHH
Q 019892 162 LGMIGWGIILPVGAIIPRYFKHKDPLWYYLHAIIQLVGFIFGLATVLLGIQLYNKL--N--VKNANISAHRGIGIFILVL 237 (334)
Q Consensus 162 lm~~aw~~l~p~gil~aR~~k~~~~~w~~~H~~~q~~~~~~~i~g~~l~~~~~~~~--~--~~~~~~~~H~~lG~~~~~l 237 (334)
...+.|.+++-.....+|+.+. +.+.++=+.+-+.+++.++.=+..-+....+. . ..+-...+=-.+|++.+++
T Consensus 49 ~~al~fLl~~la~tp~~~~~~~--~~l~~~Rr~LGl~af~~~~lH~~~Y~~~~l~~~~~~~~~d~~~rpyitiG~iafll 126 (209)
T COG2717 49 IWALIFLLVTLAVTPLARLLKQ--PKLIRIRRALGLWAFFYALLHFTAYLVLDLGLDLALLGLDLLKRPYITIGMIAFLL 126 (209)
T ss_pred HHHHHHHHHHHHHHHHHHHhcC--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHhhHHHHHhHHHHHHHHHHHH
Confidence 3344455555455556676663 45556666666666655554332211111110 0 0112334445667766666
Q ss_pred HHHHHHHhhcccCCCCCCcccccchhHHHHHHHHHHHHHHHHHhhhhccCCCcchhhHHHHHHHHHHHHH
Q 019892 238 SILQILAFFLRPSKDSKFRRFWNWYHHWFGRLALFFASVNIVLGIQIGYAGNEWKIGYGFLLAVVLLAVI 307 (334)
Q Consensus 238 ~~~Q~~~g~~r~~~~~~~r~~~~~~H~~~G~~~~~lg~~~i~~G~~~~~~~~~~~~~y~~~~~~~~~~~~ 307 (334)
++.-.+--+-.-.++-. ..|+.+|++ ++.+++||.+=...+... +..+.+.|+++.+.+++..+
T Consensus 127 l~pLalTS~k~~~rrlG--~rW~~LHrL-vYl~~~L~~lH~~~s~K~---~~~~~vlY~ii~~~lll~R~ 190 (209)
T COG2717 127 LIPLALTSFKWVRRRLG--KRWKKLHRL-VYLALILGALHYLWSVKI---DMPEPVLYAIIFAVLLLLRV 190 (209)
T ss_pred HHHHHHHhhHHHHHHHH--HHHHHHHHH-HHHHHHHHHHHHHHhcCc---cchHHHHHHHHHHHHHHHHH
Confidence 55444432110001111 668999994 788999998888872221 22345677766655554433
No 35
>PLN02351 cytochromes b561 family protein
Probab=94.39 E-value=0.64 Score=42.08 Aligned_cols=93 Identities=15% Similarity=0.219 Sum_probs=55.6
Q ss_pred hhhhhhHHHHHHHHHHHHHHhheeeeccccccCCCCcccchhhhHHHHHHHHHHHHHhhcccCCCCCCcccccchhHHHH
Q 019892 188 WYYLHAIIQLVGFIFGLATVLLGIQLYNKLNVKNANISAHRGIGIFILVLSILQILAFFLRPSKDSKFRRFWNWYHHWFG 267 (334)
Q Consensus 188 w~~~H~~~q~~~~~~~i~g~~l~~~~~~~~~~~~~~~~~H~~lG~~~~~l~~~Q~~~g~~r~~~~~~~r~~~~~~H~~~G 267 (334)
.|.+|..+|++++++.-.--++.+......++ .....|..+=.+.+++.++-... .-+.+++..+=.--.|.|+|
T Consensus 50 ffn~HP~lMviGfi~L~geAILvYR~~~~~~k--~~K~lH~~Lh~~Ali~~vvGl~a---~fh~~~~~i~nlySLHSWlG 124 (242)
T PLN02351 50 YAVLHPLLMVIGFILISGEAILVHRWLPGSRK--TKKSVHLWLQGLALASGVFGIWT---KFHGQDGIVANFYSLHSWMG 124 (242)
T ss_pred eecccHHHHHHHHHHHHHHHHHHhhcccccch--HHHHHHHHHHHHHHHHHHHHHHH---HHhcccCCccchhHHHHHHH
Confidence 34689999999988655444444443322211 13456766655555554333333 11111111122445799999
Q ss_pred HHHHHHHHHHHHHhhhhc
Q 019892 268 RLALFFASVNIVLGIQIG 285 (334)
Q Consensus 268 ~~~~~lg~~~i~~G~~~~ 285 (334)
.+++++=..|-..|+...
T Consensus 125 l~tv~Lf~lQwv~Gf~~F 142 (242)
T PLN02351 125 LICVSLFGAQWLTGFMSF 142 (242)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999999997654
No 36
>cd08765 Cyt_b561_CYBRD1 Vertebrate cytochrome b(561), CYBRD1 gene product. Duodenal cytochrome b or ferric-chelate reductase 3, a cytochrome b(561), as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. This protein is expressed at the brush border of duodenal enterocytes and may play a role in the uptake of dietary Fe(3+), facilitating its transport into the mucosal cells. It may also be involved in the recycling of extracellular ascorbate in erythrocyte membranes, and act as a ferrireductase in epithelial cells of the respiratory system. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-me
Probab=94.14 E-value=0.83 Score=38.57 Aligned_cols=96 Identities=24% Similarity=0.391 Sum_probs=58.2
Q ss_pred hhhhhhHHHHHHHHHHHHHHhheeeeccccc-cCCCCcccchhhhHHHHHHHHHHHHHhhcccCCCCCCcccccchhHHH
Q 019892 188 WYYLHAIIQLVGFIFGLATVLLGIQLYNKLN-VKNANISAHRGIGIFILVLSILQILAFFLRPSKDSKFRRFWNWYHHWF 266 (334)
Q Consensus 188 w~~~H~~~q~~~~~~~i~g~~l~~~~~~~~~-~~~~~~~~H~~lG~~~~~l~~~Q~~~g~~r~~~~~~~r~~~~~~H~~~ 266 (334)
=|.+|..+|++++++.-.-.++.+....... .+......|.++=.+.+++.++-...-+.-+.. +..+-+...|.|+
T Consensus 11 ~Fn~HPlLm~~Gfi~l~geAiL~yr~~~~~~~~k~~~k~iH~~L~~~a~~~~i~Gl~avf~~hn~--~~~~~fySlHSwl 88 (153)
T cd08765 11 EFNWHPVLMVIGFIFIQGIAIIVYRLPWTWKCSKLLMKLIHAGLHILAFILAIISVVAVFVFHNA--KNIPNMYSLHSWV 88 (153)
T ss_pred eeechHHHHHHHHHHHHHHHHHHhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHccc--cCCCccccHHHHH
Confidence 4788999999998874333333332110000 011234567766666555554443322222222 2345566799999
Q ss_pred HHHHHHHHHHHHHHhhhhc
Q 019892 267 GRLALFFASVNIVLGIQIG 285 (334)
Q Consensus 267 G~~~~~lg~~~i~~G~~~~ 285 (334)
|.+++++-..|...|+...
T Consensus 89 Gl~t~~l~~lQ~~~Gf~~f 107 (153)
T cd08765 89 GLAAVILYPLQLVLGISVY 107 (153)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998765
No 37
>PF10348 DUF2427: Domain of unknown function (DUF2427); InterPro: IPR018825 This entry represents the N-terminal region of a family of proteins conserved in fungi. Several of these proteins are annotated as being Ftp1 but this could not be confirmed. Their function is not known.
Probab=93.68 E-value=0.57 Score=36.98 Aligned_cols=87 Identities=18% Similarity=0.260 Sum_probs=56.5
Q ss_pred ChhhhhhhHHHHHHHHHHH-HHHhheeeeccccccCCCCcccchhhhHHHHHHHHHHHHHhhcccCCCCCCcccccchhH
Q 019892 186 PLWYYLHAIIQLVGFIFGL-ATVLLGIQLYNKLNVKNANISAHRGIGIFILVLSILQILAFFLRPSKDSKFRRFWNWYHH 264 (334)
Q Consensus 186 ~~w~~~H~~~q~~~~~~~i-~g~~l~~~~~~~~~~~~~~~~~H~~lG~~~~~l~~~Q~~~g~~r~~~~~~~r~~~~~~H~ 264 (334)
+...+.|..+|+++.++.. +|++++... + ++|--.=++-+++.++-.++|....+... ..+.+-.|.
T Consensus 15 ~~~l~~Hi~lm~la~~il~Pi~lvL~~~~-s---------r~~~~~q~~~~~l~~~g~~~g~~~~~~~p--~lyp~n~H~ 82 (105)
T PF10348_consen 15 RSALYAHIVLMTLAWVILYPIGLVLGNAR-S---------RWHLPVQTVFLVLMILGLFLGSVYNGSTP--DLYPNNAHG 82 (105)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHcc-c---------hHHHHHHHHHHHHHHHHHHHHHHHhcCCC--CCCCCCHHH
Confidence 4568999999999876655 677765432 1 33444433333444444445543222211 134678999
Q ss_pred HHHHHHHHHHHHHHHHhhhh
Q 019892 265 WFGRLALFFASVNIVLGIQI 284 (334)
Q Consensus 265 ~~G~~~~~lg~~~i~~G~~~ 284 (334)
-+|++++++.+++...|+..
T Consensus 83 k~g~il~~l~~~q~~~gv~~ 102 (105)
T PF10348_consen 83 KMGWILFVLMIVQVILGVIL 102 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999754
No 38
>PLN02810 carbon-monoxide oxygenase
Probab=93.40 E-value=1 Score=40.43 Aligned_cols=94 Identities=19% Similarity=0.292 Sum_probs=61.2
Q ss_pred hhhhhhhHHHHHHHHHHHHHHhheeeeccccccCCCCcccchhhhHHHHHHHHHHHHHhhcccCCCCCCcccccchhHHH
Q 019892 187 LWYYLHAIIQLVGFIFGLATVLLGIQLYNKLNVKNANISAHRGIGIFILVLSILQILAFFLRPSKDSKFRRFWNWYHHWF 266 (334)
Q Consensus 187 ~w~~~H~~~q~~~~~~~i~g~~l~~~~~~~~~~~~~~~~~H~~lG~~~~~l~~~Q~~~g~~r~~~~~~~r~~~~~~H~~~ 266 (334)
.=|.+|..+|++++++.-.--++.+......+ ......|..+=.+.+++.++-...-+-.++. .+ .+=.-.+|.|+
T Consensus 45 ~~FN~HPvlMv~Gfi~l~geAIL~Yr~~~~~k--~~~K~iH~~lh~~Al~l~vvGl~Avf~~Hn~-~~-i~nlySLHSWl 120 (231)
T PLN02810 45 LIFNLHPVLMLIGLIIIGGEAIMSYKSLPLKK--EVKKLIHLVLHAIALILGIFGICAAFKNHNE-SG-IANLYSLHSWL 120 (231)
T ss_pred ceeeehHHHHHHHHHHHhhHHHHHhhcccccc--chHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cC-CCceeeHHHHH
Confidence 35789999999998876554445553322111 1245678877777776665554433322322 22 23344699999
Q ss_pred HHHHHHHHHHHHHHhhhh
Q 019892 267 GRLALFFASVNIVLGIQI 284 (334)
Q Consensus 267 G~~~~~lg~~~i~~G~~~ 284 (334)
|.+++++-..|-..|+..
T Consensus 121 Gl~tv~Lf~lQw~~Gf~~ 138 (231)
T PLN02810 121 GIGIISLYGIQWIYGFIV 138 (231)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999999999843
No 39
>KOG1619 consensus Cytochrome b [Energy production and conversion]
Probab=91.53 E-value=1.6 Score=39.38 Aligned_cols=94 Identities=21% Similarity=0.307 Sum_probs=61.7
Q ss_pred hhhhhhhHHHHHHHHHHHHHHhhe-eee-ccccccCCCCcccchhhhHHHHHHHHHHHHHhhcccCCCCCCcccccchhH
Q 019892 187 LWYYLHAIIQLVGFIFGLATVLLG-IQL-YNKLNVKNANISAHRGIGIFILVLSILQILAFFLRPSKDSKFRRFWNWYHH 264 (334)
Q Consensus 187 ~w~~~H~~~q~~~~~~~i~g~~l~-~~~-~~~~~~~~~~~~~H~~lG~~~~~l~~~Q~~~g~~r~~~~~~~r~~~~~~H~ 264 (334)
.=|.+|..+|++|+++. -|.++- +.. ....+. -..-.|..+=++.+++.++-...-+..++..+ -.=+-.+|.
T Consensus 53 ~~fnlHP~lMviGfI~l-~GeAiL~YR~~r~~~k~--~~KliH~~LH~~Alvl~i~gl~avf~~hn~~~--i~NfySLHS 127 (245)
T KOG1619|consen 53 KEFNLHPVLMVIGFIYL-QGEAILIYRVFRYTSKK--VSKLIHLGLHIIALVLAIIGLCAVFDSHNLVG--IANFYSLHS 127 (245)
T ss_pred hhcCcchHHHHHHHHHh-ccceeeeeehhhhhhHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC--ccceeeHHH
Confidence 45789999999998853 354443 222 122221 23467888888888877766555444443322 122335899
Q ss_pred HHHHHHHHHHHHHHHHhhhhc
Q 019892 265 WFGRLALFFASVNIVLGIQIG 285 (334)
Q Consensus 265 ~~G~~~~~lg~~~i~~G~~~~ 285 (334)
|+|.+++++=.+|-..|+.-+
T Consensus 128 WlGl~~v~ly~~Q~v~GF~tf 148 (245)
T KOG1619|consen 128 WLGLCVVILYSLQWVFGFFTF 148 (245)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999997754
No 40
>PF10067 DUF2306: Predicted membrane protein (DUF2306); InterPro: IPR018750 Members of this family of hypothetical bacterial proteins have no known function.
Probab=91.34 E-value=0.75 Score=36.08 Aligned_cols=32 Identities=22% Similarity=0.404 Sum_probs=27.3
Q ss_pred cccccchhHHHHHHHHHHHHHHHHHhhhhccC
Q 019892 256 RRFWNWYHHWFGRLALFFASVNIVLGIQIGYA 287 (334)
Q Consensus 256 r~~~~~~H~~~G~~~~~lg~~~i~~G~~~~~~ 287 (334)
|+.....|+++||+-.++..+....|+.+...
T Consensus 2 R~k~~~~HR~lGrvyv~~~~~~a~sa~~i~~~ 33 (103)
T PF10067_consen 2 RRKGPRLHRWLGRVYVAAMLISALSALFIAFY 33 (103)
T ss_pred CCCcccHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 55667899999999999999999999888654
No 41
>PF13172 PepSY_TM_1: PepSY-associated TM helix
Probab=90.81 E-value=0.28 Score=30.29 Aligned_cols=31 Identities=29% Similarity=0.770 Sum_probs=25.9
Q ss_pred cccccchhHHHHHHHHHHHHHHHHHhhhhcc
Q 019892 256 RRFWNWYHHWFGRLALFFASVNIVLGIQIGY 286 (334)
Q Consensus 256 r~~~~~~H~~~G~~~~~lg~~~i~~G~~~~~ 286 (334)
|+.+..+|+++|..+.+.-.+-+.+|+.+..
T Consensus 2 r~~~~~~H~~~g~~~~~~ll~~~lTG~~l~~ 32 (34)
T PF13172_consen 2 RKFWRKIHRWLGLIAAIFLLLLALTGALLNF 32 (34)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5677789999999999999999999887653
No 42
>PF13301 DUF4079: Protein of unknown function (DUF4079)
Probab=89.97 E-value=3.5 Score=35.66 Aligned_cols=62 Identities=21% Similarity=0.209 Sum_probs=49.6
Q ss_pred CcccchhhhHHHHHHHHHHHHHhhc---ccCCCCCCcccccchhHHHHHHHHHHHHHHHHHhhhhccCCC
Q 019892 223 NISAHRGIGIFILVLSILQILAFFL---RPSKDSKFRRFWNWYHHWFGRLALFFASVNIVLGIQIGYAGN 289 (334)
Q Consensus 223 ~~~~H~~lG~~~~~l~~~Q~~~g~~---r~~~~~~~r~~~~~~H~~~G~~~~~lg~~~i~~G~~~~~~~~ 289 (334)
....|..+|.++++++.+-.+.|.. +... +++..-|-|.|.++..|=.++..+.-.+....+
T Consensus 79 ~r~~H~~~g~~ll~~~~L~~lGG~~~~~~~~~-----~lf~spH~~~Gl~~~~L~~~s~al~~~i~~g~~ 143 (175)
T PF13301_consen 79 ARDRHYRLGFALLAFMGLGALGGQLGTYRQNG-----KLFWSPHLWAGLAVVGLMAFSAALVPQIQKGNR 143 (175)
T ss_pred hHHHHHHHHHHHHHHHHHHHHcchHHHHHcCC-----CCccCchHHHHHHHHHHHHHHHHHHHHHccCCc
Confidence 5688999999999999998888743 3222 255667999999999999999999888876444
No 43
>PRK11513 cytochrome b561; Provisional
Probab=89.40 E-value=5 Score=34.61 Aligned_cols=61 Identities=20% Similarity=0.149 Sum_probs=37.2
Q ss_pred CcccchhhhHHHHHHHHHHHHHhhcccCCCCCCc-ccc-cchhHHHHHHHHHHHHHHHHHhhh
Q 019892 223 NISAHRGIGIFILVLSILQILAFFLRPSKDSKFR-RFW-NWYHHWFGRLALFFASVNIVLGIQ 283 (334)
Q Consensus 223 ~~~~H~~lG~~~~~l~~~Q~~~g~~r~~~~~~~r-~~~-~~~H~~~G~~~~~lg~~~i~~G~~ 283 (334)
....|..+|+++++++++-.+..+..+.+..... +.| +..=+..-.++|++-++...+|+.
T Consensus 41 ~~~~H~s~G~~vl~L~v~Rl~~r~~~~~P~~~~~~~~~~~~~A~~~H~~LY~lli~~plsG~~ 103 (176)
T PRK11513 41 INMIHVSCGISILVLMVVRLLLRLKYPTPPIVPKPKPMMTGLAHLGHLVIYLLFIALPVIGLV 103 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578999999999999999999987543321111 112 111112225566666666666654
No 44
>COG5658 Predicted integral membrane protein [Function unknown]
Probab=88.37 E-value=3.8 Score=36.21 Aligned_cols=87 Identities=18% Similarity=0.242 Sum_probs=52.3
Q ss_pred hhHHHHHHHHHHHHHhh-cccC-C----------CCCCcccccchhHHHHHHHHHHHHHHHHHhhhhccCCCcchhhHHH
Q 019892 230 IGIFILVLSILQILAFF-LRPS-K----------DSKFRRFWNWYHHWFGRLALFFASVNIVLGIQIGYAGNEWKIGYGF 297 (334)
Q Consensus 230 lG~~~~~l~~~Q~~~g~-~r~~-~----------~~~~r~~~~~~H~~~G~~~~~lg~~~i~~G~~~~~~~~~~~~~y~~ 297 (334)
.|++.-.++++-.++.+ ++|+ + ..+.+..|+..|+++|-.+++.+.+....+........-+...+..
T Consensus 4 ~~lv~~gLvilagils~v~yp~~Pn~v~~~r~~~~~~d~~~wk~a~~~l~pl~vi~gl~~~~~~~l~~~~~~~~~~v~~~ 83 (204)
T COG5658 4 LGLVLAGLVILAGILSIVLYPKLPNEVVGHRTVDSSPDQAMWKKAGLFLGPLLVIGGLVTRYMSLLAGGQGQMLLAVALF 83 (204)
T ss_pred cccHHHHHHHHHHHHHHHcCCCCCccceeeecCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHhHHHHHHHH
Confidence 34455555555555543 3444 2 2344677999999999999999999999988777665444444444
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 019892 298 LLAVVLLAVIVLETLSWMK 316 (334)
Q Consensus 298 ~~~~~~~~~~~le~~~~~~ 316 (334)
..++++...+.+.+..+..
T Consensus 84 ~~~~Il~li~~ls~~l~~~ 102 (204)
T COG5658 84 AAVLILFLILLLSAILVAL 102 (204)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3433333333333333333
No 45
>PF01794 Ferric_reduct: Ferric reductase like transmembrane component; InterPro: IPR013130 This family includes a common region in the transmembrane proteins mammalian cytochrome b-245 heavy chain (gp91-phox), ferric reductase transmembrane component in yeast and respiratory burst oxidase from Arabidopsis thaliana. This may be a family of flavocytochromes capable of moving electrons across the plasma membrane [] that include a potential FAD binding domain. Mutations in the sequence of cytochrome b-245 heavy chain (gp91-phox) lead to the X-linked chronic granulomatous disease. The bacteriocidal ability of phagocytic cells is reduced and is characterised by the absence of a functional plasma membrane associated NADPH oxidase [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0016021 integral to membrane
Probab=87.58 E-value=2.1 Score=33.96 Aligned_cols=50 Identities=36% Similarity=0.460 Sum_probs=32.9
Q ss_pred hhHHHHHHHHHHHHHhhcccCCC----CCCcccccchhHHHHHHHHHHHHHHHHH
Q 019892 230 IGIFILVLSILQILAFFLRPSKD----SKFRRFWNWYHHWFGRLALFFASVNIVL 280 (334)
Q Consensus 230 lG~~~~~l~~~Q~~~g~~r~~~~----~~~r~~~~~~H~~~G~~~~~lg~~~i~~ 280 (334)
+|.+.++++.++.+.+ .|+..- .........+|+++|+.+++++.+=...
T Consensus 1 ~G~~a~~~l~~~~~l~-~R~~~l~~~~~~~~~~~~~~Hr~lg~~~~~~~~~H~~~ 54 (125)
T PF01794_consen 1 LGILAFALLPLVFLLG-LRNSPLARLTGISFDRLLRFHRWLGRLAFFLALLHGVL 54 (125)
T ss_pred CHHHHHHHHHHHHHHH-HhhhHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4777777888888777 554321 1111223459999999999999876543
No 46
>TIGR02125 CytB-hydogenase Ni/Fe-hydrogenase, b-type cytochrome subunit. This model describes a family of cytochrome b proteins which appear to be specific for nickel-iron hydrogenase complexes. Every genome which contains a member of this family posesses a Ni/Fe hydrogenase according to Genome Properties (GenProp0177), and most are gene clustered with other hydrogenase components. Some Ni/Fe hydrogenase-containing species lack a member of this family but contain other CytB homologs (pfam01292) which may substitute for it.
Probab=87.02 E-value=7.5 Score=34.08 Aligned_cols=27 Identities=15% Similarity=0.018 Sum_probs=22.2
Q ss_pred cchhHHHHHHHHHHHHHHHHHhhhhcc
Q 019892 260 NWYHHWFGRLALFFASVNIVLGIQIGY 286 (334)
Q Consensus 260 ~~~H~~~G~~~~~lg~~~i~~G~~~~~ 286 (334)
|..-+..-.+++++..+.+.+|+.+..
T Consensus 113 n~~~k~~~~~l~~~~~~~~lTG~~~~~ 139 (211)
T TIGR02125 113 NPLQFVAYFGFIVLILFMILTGLALYY 139 (211)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 667777788888899999999988764
No 47
>PF04238 DUF420: Protein of unknown function (DUF420); InterPro: IPR007352 This is a predicted membrane protein with four transmembrane helices.
Probab=86.15 E-value=10 Score=31.26 Aligned_cols=41 Identities=22% Similarity=0.284 Sum_probs=23.9
Q ss_pred hhHHHHHHHHHHHHhhhhhhhhhccCCCChhhhhhhHHHHHHHHHHHH
Q 019892 158 NHGALGMIGWGIILPVGAIIPRYFKHKDPLWYYLHAIIQLVGFIFGLA 205 (334)
Q Consensus 158 ~Hg~lm~~aw~~l~p~gil~aR~~k~~~~~w~~~H~~~q~~~~~~~i~ 205 (334)
....++.++..+++ .|...+|--| .+.|+-+|..++++..+
T Consensus 7 l~a~~~~~s~~ll~-~g~~~Ir~~~------~~~Hr~~Ml~a~~ls~l 47 (133)
T PF04238_consen 7 LNAVLNAISAVLLL-IGWYFIRRGR------IKLHRKLMLTAFVLSAL 47 (133)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHhCC------HHHHHHHHHHHHHHHHH
Confidence 44566666665555 5555554211 36788888776665543
No 48
>PF00033 Cytochrom_B_N: Cytochrome b(N-terminal)/b6/petB; InterPro: IPR016174 This entry represents a haem-binding domain with a 4-helical bundle structure that is found in transmembrane di-haem cytochromes. The domain contains four transmembrane helices in an up-and-down bundle, and binds two haem groups in between the helices; three of the four haem-binding residues is conserved between family members. Proteins containing this domain include: N-terminal domain of mitochondrial cytochrome b subunit, in which the domain contains an extra transmembrane linker helix that is absent in plant and cyanobacteria subunits []. Cytochrome b6 subunit of the cytochrome b6f complex, which provides the electronic connection between the photosystems I and II reaction centres of oxygenic photosynthesis, and generates a transmembrane electrochemical proton gradient for adenosine triphosphate synthesis []. Cytochrome gamma subunit of formate dehydrogenase-N (Fdn-N), which acts as a major component of Escherichia coli nitrate respiration []. ; GO: 0022904 respiratory electron transport chain, 0016020 membrane; PDB: 1KQG_C 1KQF_C.
Probab=85.94 E-value=3.7 Score=34.96 Aligned_cols=127 Identities=15% Similarity=0.115 Sum_probs=74.1
Q ss_pred hhhhHHHHHHHHHHHHhhhhhhhhh---ccC---CCChhhhhhhHHHHHHHHHHHHHHhheeee----------------
Q 019892 156 KKNHGALGMIGWGIILPVGAIIPRY---FKH---KDPLWYYLHAIIQLVGFIFGLATVLLGIQL---------------- 213 (334)
Q Consensus 156 ~~~Hg~lm~~aw~~l~p~gil~aR~---~k~---~~~~w~~~H~~~q~~~~~~~i~g~~l~~~~---------------- 213 (334)
+..| +++++++.+++..|..+... ... .....+.+|..+-.+-+++.+.=+...+..
T Consensus 9 R~~H-w~~al~~~~l~~tG~~~~~~~~~~~~~~~~~~~~~~~H~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (188)
T PF00033_consen 9 RLLH-WLNALLFILLLITGLYLMFPFWWLAGGFPGRQLLRWLHFSLGIVFLALFLLRILWRLFSRRFWKSDDIWFRQIPQ 87 (188)
T ss_dssp HHHH-HHHHHHHHHHHHHHHHHH-TTGGGGGTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHGGGT---GGGHHHHHSHHH
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHcccccccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhHHHHHHH
Confidence 4455 47778888888888877521 111 123567889888766544444333333332
Q ss_pred --cc---ccccCCCCcccchhhhHHHHHHHHHHHHHhhcc--------cCC---CCCCcccccchhHHHHHHHHHHHHHH
Q 019892 214 --YN---KLNVKNANISAHRGIGIFILVLSILQILAFFLR--------PSK---DSKFRRFWNWYHHWFGRLALFFASVN 277 (334)
Q Consensus 214 --~~---~~~~~~~~~~~H~~lG~~~~~l~~~Q~~~g~~r--------~~~---~~~~r~~~~~~H~~~G~~~~~lg~~~ 277 (334)
.. ..+.....+...+..-.++..+++++++.|+.. +.. ..........+|.+.+.+++++-.+=
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iTG~~~~~~~~~~~~~~~~~~~~~~~~~~~iH~~~~~ll~~~i~~H 167 (188)
T PF00033_consen 88 YRLFPRKPPPPSGKYNPLQKLVYWALYLLLLLMAITGLIMLWFFWWPLPPWLLPPPGLAEWARLIHFILAYLLLAFIIIH 167 (188)
T ss_dssp HHTT-HHHH----SS-HHHHHHHHHHHHHHHHHHHHHHHC-----TTTTGGGS-HHHH-HHHHHHHHHHHHHHHHHHHHH
T ss_pred hhccCCCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccchhhcCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 011112355667778888888899999999765 111 11224556788998888888777666
Q ss_pred HHHhhh
Q 019892 278 IVLGIQ 283 (334)
Q Consensus 278 i~~G~~ 283 (334)
++.++.
T Consensus 168 i~~a~~ 173 (188)
T PF00033_consen 168 IYAAIF 173 (188)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 665543
No 49
>PF13789 DUF4181: Domain of unknown function (DUF4181)
Probab=84.71 E-value=5.5 Score=31.59 Aligned_cols=65 Identities=12% Similarity=0.084 Sum_probs=41.2
Q ss_pred ccccchhHHHHHHHHHHHHHHHHHhhhhccCCCcchhhHHHHHHHHHHHHHHHHHHHHhhhCCCCCC
Q 019892 257 RFWNWYHHWFGRLALFFASVNIVLGIQIGYAGNEWKIGYGFLLAVVLLAVIVLETLSWMKKRSDKTT 323 (334)
Q Consensus 257 ~~~~~~H~~~G~~~~~lg~~~i~~G~~~~~~~~~~~~~y~~~~~~~~~~~~~le~~~~~~~r~~~~~ 323 (334)
...|..|++.-+.+++..++.++.+..+...... ..+..+..+.++....-.+-.|+.+|+.|+-
T Consensus 25 ~~vn~~h~~~e~~i~i~~ii~~~~~~~~~~~~~~--~~~~~~~~f~~~~~~~ra~mEWKy~resK~y 89 (110)
T PF13789_consen 25 KHVNKLHKKGEWIIFIIFIILIFIFLFIFIFRFF--YPYILIFLFLIILFCFRAFMEWKYDRESKEY 89 (110)
T ss_pred CchhHHHHHHHHHhhhhHHHHHHHHHHHHhcchH--HHHHHHHHHHHHHHHHHHHHHHHhcccchhh
Confidence 5568899999999999999999777666543311 1122223333333333334459999988863
No 50
>PF13706 PepSY_TM_3: PepSY-associated TM helix
Probab=84.45 E-value=1.2 Score=28.15 Aligned_cols=29 Identities=24% Similarity=0.458 Sum_probs=22.1
Q ss_pred cccccchhHHHHHHHHHHHHHHHHHhhhh
Q 019892 256 RRFWNWYHHWFGRLALFFASVNIVLGIQI 284 (334)
Q Consensus 256 r~~~~~~H~~~G~~~~~lg~~~i~~G~~~ 284 (334)
|+.+..+|+|+|.++-++-.+-+++|..+
T Consensus 1 rr~~~~~H~W~Gl~~g~~l~~~~~tG~~~ 29 (37)
T PF13706_consen 1 RRILRKLHRWLGLILGLLLFVIFLTGAVM 29 (37)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 45667789999988888888888877544
No 51
>PF01292 Ni_hydr_CYTB: Prokaryotic cytochrome b561; InterPro: IPR011577 Cytochrome b561 is an integral membrane and electron transport protein, that binds two haem groups non-covalently. This domain is also found in a number of nickel-dependent hydrogenase subunits which are also B-type cytochromes that interact with quinones and anchor the hydrogenase to the membrane. Members of the 'eukaryotic cytochrome b561' family can be found in IPR004877 from INTERPRO.; GO: 0009055 electron carrier activity, 0016021 integral to membrane
Probab=83.80 E-value=7.5 Score=33.01 Aligned_cols=94 Identities=13% Similarity=0.059 Sum_probs=57.8
Q ss_pred hhhhHHHHHHHHHHHHHHhheeeeccccccCCCC--cccchhhhHHHHHHHHHHHHHh---------------------h
Q 019892 190 YLHAIIQLVGFIFGLATVLLGIQLYNKLNVKNAN--ISAHRGIGIFILVLSILQILAF---------------------F 246 (334)
Q Consensus 190 ~~H~~~q~~~~~~~i~g~~l~~~~~~~~~~~~~~--~~~H~~lG~~~~~l~~~Q~~~g---------------------~ 246 (334)
.+|+..-+.-+++.+.|+.+-......... +.. ...|.++|++++.+.++=.+.. .
T Consensus 8 ~~HW~~a~~~i~l~~tG~~~~~~~~~~~~~-~~~~~~~~H~~~G~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (182)
T PF01292_consen 8 ILHWLNALSFIALIATGLWIHFPPPGLYFG-DFGGVRNWHVIAGLLLFALLIFRLLWRWRRLFPWSDDVFFQVKNYLYFL 86 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccccccc-ccchHHhHHHHHHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHH
Confidence 468777776677777777664433222111 111 6789999999998887766655 1
Q ss_pred cccCCCCCCcccccchhHHHHHHHHHHHHHHHHHhhhhcc
Q 019892 247 LRPSKDSKFRRFWNWYHHWFGRLALFFASVNIVLGIQIGY 286 (334)
Q Consensus 247 ~r~~~~~~~r~~~~~~H~~~G~~~~~lg~~~i~~G~~~~~ 286 (334)
.+.+ .+....++..-+..-.+.+++..+.+.+|+.++.
T Consensus 87 ~~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~iTG~~~~~ 124 (182)
T PF01292_consen 87 LRGK--PPPAGKYNPGQKIVHWVLYLLLLLLPITGLLLWF 124 (182)
T ss_pred hcCC--CCCCCcCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111 1122334555555777788888888888988743
No 52
>COG3038 CybB Cytochrome B561 [Energy production and conversion]
Probab=82.66 E-value=4.4 Score=35.21 Aligned_cols=61 Identities=25% Similarity=0.287 Sum_probs=42.5
Q ss_pred hhhhhHHHHHHHHHHHHHHhheeeeccc-cccCCCCcccchhhhHHHHHHHHHHHHHhhcccCC
Q 019892 189 YYLHAIIQLVGFIFGLATVLLGIQLYNK-LNVKNANISAHRGIGIFILVLSILQILAFFLRPSK 251 (334)
Q Consensus 189 ~~~H~~~q~~~~~~~i~g~~l~~~~~~~-~~~~~~~~~~H~~lG~~~~~l~~~Q~~~g~~r~~~ 251 (334)
..+|+..-++-+...++|...+.....+ ... .....|..+|+.++.++++-.+..+.-|.+
T Consensus 13 i~lHWl~allv~~~~~~g~~~~~~~~~~~~~~--~~~~~Hks~Gi~vl~L~v~Rl~wrl~~~~p 74 (181)
T COG3038 13 IALHWLMALLVIGAFALGELMGFLPRGPGLYF--LLYELHKSIGILVLALMVLRLLWRLRNPAP 74 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcccCchHHH--HHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 4678877666555555666665544433 111 367899999999999999999998875444
No 53
>TIGR01583 formate-DH-gamm formate dehydrogenase, gamma subunit. NiFe-hydrogenase and thiosulfate reductase contain homologous gamma subunits, and these can be found scoring in the noise of this model.
Probab=80.26 E-value=28 Score=30.58 Aligned_cols=30 Identities=13% Similarity=0.021 Sum_probs=26.3
Q ss_pred cccccchhHHHHHHHHHHHHHHHHHhhhhc
Q 019892 256 RRFWNWYHHWFGRLALFFASVNIVLGIQIG 285 (334)
Q Consensus 256 r~~~~~~H~~~G~~~~~lg~~~i~~G~~~~ 285 (334)
...+|...+..-.++++++.+.+.+|+.++
T Consensus 101 ~~kyN~~Qk~~y~~i~~~~~~~~~TGl~m~ 130 (204)
T TIGR01583 101 AGKYNAGQKSWYWILVLGGFLMIITGIFMW 130 (204)
T ss_pred CCCCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355899999999999999999999999987
No 54
>TIGR01191 ccmC heme exporter protein CcmC. This model describes the cyt c biogenesis protein encoded by ccmC in bacteria. It must be noted an arabidopsis, a tritcum and a piscum plant proteins were recognizable in the clade. Quite likely they are of organellar origin. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes, ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in the heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=80.17 E-value=20 Score=31.29 Aligned_cols=66 Identities=17% Similarity=0.138 Sum_probs=47.5
Q ss_pred ccccchhhhhHHHHHHHHHHHHhhhhhhhhhccCCCChhhhhhhHHHHHHHHHHHHHHhheeeecc
Q 019892 150 YVSSREKKNHGALGMIGWGIILPVGAIIPRYFKHKDPLWYYLHAIIQLVGFIFGLATVLLGIQLYN 215 (334)
Q Consensus 150 ~~~~~~~~~Hg~lm~~aw~~l~p~gil~aR~~k~~~~~w~~~H~~~q~~~~~~~i~g~~l~~~~~~ 215 (334)
|+..+.+..|.-.+.++.+.+.-.++....|+..+++.+-.+-..+-.+|+++..+|++.|....+
T Consensus 7 g~~~ri~yiHVp~a~~~~~~~~~~~~~s~~yL~~~~~~~D~la~~~a~iGf~f~tl~LitGaiWak 72 (184)
T TIGR01191 7 GASVRIMYVHVPAAWMAIGVYIMMAIASFIFLVWKHPLSDLAAKAAAPIGAVFTLIALVTGSLWGK 72 (184)
T ss_pred CcceeehhhHHHHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457789999999999998888777777777765444444444444455788888888888876544
No 55
>PF13630 SdpI: SdpI/YhfL protein family
Probab=79.95 E-value=2.2 Score=31.06 Aligned_cols=34 Identities=24% Similarity=0.423 Sum_probs=28.9
Q ss_pred CCcccccchhHHHHHHHHHHHHHHHHHhhhhccC
Q 019892 254 KFRRFWNWYHHWFGRLALFFASVNIVLGIQIGYA 287 (334)
Q Consensus 254 ~~r~~~~~~H~~~G~~~~~lg~~~i~~G~~~~~~ 287 (334)
+....|+..|+..|...++.|++.+..|+.....
T Consensus 18 ~s~~~W~~a~r~~g~~~~~~Gi~~~~~~~~~~~~ 51 (76)
T PF13630_consen 18 KSDENWKKAHRFAGKIFIIGGIVLLIIGIIILFL 51 (76)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4457799999999999999999999998876543
No 56
>PF01292 Ni_hydr_CYTB: Prokaryotic cytochrome b561; InterPro: IPR011577 Cytochrome b561 is an integral membrane and electron transport protein, that binds two haem groups non-covalently. This domain is also found in a number of nickel-dependent hydrogenase subunits which are also B-type cytochromes that interact with quinones and anchor the hydrogenase to the membrane. Members of the 'eukaryotic cytochrome b561' family can be found in IPR004877 from INTERPRO.; GO: 0009055 electron carrier activity, 0016021 integral to membrane
Probab=79.67 E-value=17 Score=30.76 Aligned_cols=125 Identities=14% Similarity=0.090 Sum_probs=64.6
Q ss_pred hhhhHHHHHHHHHHHHhhhhhhhhhccCC--CChh--hhhhhHHHHHHHHHHHHHHhhe--------------------e
Q 019892 156 KKNHGALGMIGWGIILPVGAIIPRYFKHK--DPLW--YYLHAIIQLVGFIFGLATVLLG--------------------I 211 (334)
Q Consensus 156 ~~~Hg~lm~~aw~~l~p~gil~aR~~k~~--~~~w--~~~H~~~q~~~~~~~i~g~~l~--------------------~ 211 (334)
+..| +++.+++.+++..|..+....+.. ...+ +.+|..+-.+-.++.+.-+... .
T Consensus 7 r~~H-W~~a~~~i~l~~tG~~~~~~~~~~~~~~~~~~~~~H~~~G~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 85 (182)
T PF01292_consen 7 RILH-WLNALSFIALIATGLWIHFPPPGLYFGDFGGVRNWHVIAGLLLFALLIFRLLWRWRRLFPWSDDVFFQVKNYLYF 85 (182)
T ss_pred HHHH-HHHHHHHHHHHHHHHHHhcccccccccccchHHhHHHHHHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHH
Confidence 3455 456667777777776554322221 1122 5779886655444333332222 0
Q ss_pred eeccccccCCCCcccchhhhHHHHHHHHHHHHHhhcc--c--C------CCCCCcccccchhHHHHHHHHHHHHHHHHHh
Q 019892 212 QLYNKLNVKNANISAHRGIGIFILVLSILQILAFFLR--P--S------KDSKFRRFWNWYHHWFGRLALFFASVNIVLG 281 (334)
Q Consensus 212 ~~~~~~~~~~~~~~~H~~lG~~~~~l~~~Q~~~g~~r--~--~------~~~~~r~~~~~~H~~~G~~~~~lg~~~i~~G 281 (334)
...++.+.....+..-.....++.+++.++++.|++. . . ...........+|.+.+..++++..+=+...
T Consensus 86 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~iTG~~~~~~~~~~~~~~~~~~~~~~~~~~vH~~~a~~~i~~i~~Hv~~a 165 (182)
T PF01292_consen 86 LLRGKPPPAGKYNPGQKIVHWVLYLLLLLLPITGLLLWFASAEGFPLFAASPGGAQIARSVHFFLAWLLIAFIILHVYAA 165 (182)
T ss_pred HhcCCCCCCCcCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0111112111122333344667777888999988653 1 1 1222345567888888888776555544443
No 57
>PF13703 PepSY_TM_2: PepSY-associated TM helix
Probab=77.90 E-value=8.6 Score=28.99 Aligned_cols=31 Identities=29% Similarity=0.344 Sum_probs=24.6
Q ss_pred CCcccccchhHHHHHHHHHHHHHHHHHhhhhc
Q 019892 254 KFRRFWNWYHHWFGRLALFFASVNIVLGIQIG 285 (334)
Q Consensus 254 ~~r~~~~~~H~~~G~~~~~lg~~~i~~G~~~~ 285 (334)
+.|+ +...|+.+|..+.+.-.+=+.+|+...
T Consensus 56 ~~r~-~~dlH~~~G~~~~~~ll~~a~TG~~~~ 86 (88)
T PF13703_consen 56 SKRR-WFDLHRVLGLWFLPFLLVIALTGLFFS 86 (88)
T ss_pred ccCh-HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444 666999999999999999888887653
No 58
>COG4858 Uncharacterized membrane-bound protein conserved in bacteria [Function unknown]
Probab=76.87 E-value=33 Score=29.94 Aligned_cols=88 Identities=17% Similarity=0.259 Sum_probs=45.5
Q ss_pred cCCCChhhhhhhHHHHHHHHHHHHHHhheeeeccccccCCCCcccchhhhHHHHHHHHHHH-----HHh--hcccCCCCC
Q 019892 182 KHKDPLWYYLHAIIQLVGFIFGLATVLLGIQLYNKLNVKNANISAHRGIGIFILVLSILQI-----LAF--FLRPSKDSK 254 (334)
Q Consensus 182 k~~~~~w~~~H~~~q~~~~~~~i~g~~l~~~~~~~~~~~~~~~~~H~~lG~~~~~l~~~Q~-----~~g--~~r~~~~~~ 254 (334)
|+.+|+|.++--.+-.++++..+-|+.. +.. +--+..|++++++..+-- ++. +.|+..+..
T Consensus 89 kNtdp~lm~lDssLl~lg~~aLlsgita-ff~-----------~nA~~~GlItlll~a~vgGfamy~my~y~yr~~ad~s 156 (226)
T COG4858 89 KNTDPWLMWLDSSLLFLGAMALLSGITA-FFQ-----------KNAQVYGLITLLLTAVVGGFAMYIMYYYAYRMRADNS 156 (226)
T ss_pred cCCCceEEEecccHHHHHHHHHHHHHHH-HHh-----------cCCcchhHHHHHHHHHhhhHHHHHHHHHHHHhhcccc
Confidence 4456777777777766666655555432 221 123467777766543211 111 125555443
Q ss_pred -CcccccchhHHHHHHHHHHHHHHHHHhh
Q 019892 255 -FRRFWNWYHHWFGRLALFFASVNIVLGI 282 (334)
Q Consensus 255 -~r~~~~~~H~~~G~~~~~lg~~~i~~G~ 282 (334)
+.+.|+++-...+-.++-+++. +.+++
T Consensus 157 qr~~~~K~~lv~~~sm~lWi~v~-i~t~~ 184 (226)
T COG4858 157 QRPGTWKYLLVAVLSMLLWIAVM-IATVF 184 (226)
T ss_pred cCCchHHHHHHHHHHHHHHHHHH-HHHhh
Confidence 3456776666655555444443 44444
No 59
>PRK10171 hydrogenase 1 b-type cytochrome subunit; Provisional
Probab=75.59 E-value=58 Score=29.34 Aligned_cols=27 Identities=11% Similarity=-0.084 Sum_probs=17.5
Q ss_pred cchhHHHHHHHHHHHHHHHHHhhhhcc
Q 019892 260 NWYHHWFGRLALFFASVNIVLGIQIGY 286 (334)
Q Consensus 260 ~~~H~~~G~~~~~lg~~~i~~G~~~~~ 286 (334)
|+.-+..=..++++..+++.+|+.++.
T Consensus 126 Nplg~~~~~~l~~l~~~~iiTGl~l~~ 152 (235)
T PRK10171 126 NPIAQAAMFGYFLMSVFMIITGFALYS 152 (235)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 444333333466778899999987764
No 60
>PRK05419 putative sulfite oxidase subunit YedZ; Reviewed
Probab=74.19 E-value=47 Score=29.43 Aligned_cols=47 Identities=17% Similarity=0.258 Sum_probs=27.5
Q ss_pred cccchhHHHHHHHHHHHHHHHHHhhhhccCCCcchhhHHHHHHHHHHHHHH
Q 019892 258 FWNWYHHWFGRLALFFASVNIVLGIQIGYAGNEWKIGYGFLLAVVLLAVIV 308 (334)
Q Consensus 258 ~~~~~H~~~G~~~~~lg~~~i~~G~~~~~~~~~~~~~y~~~~~~~~~~~~~ 308 (334)
.|+.+|+. .+.+++|+.+=.+...... ..-...|+++++.+++..+.
T Consensus 145 ~Wk~LH~l-~Y~a~~L~~~H~~~~~k~~---~~~~~~y~~~~~~ll~~R~~ 191 (205)
T PRK05419 145 RWQKLHRL-VYLIAILAPLHYLWSVKSD---SPEPLIYAAIVAVLLALRLK 191 (205)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHhccc---cccHHHHHHHHHHHHHHHHH
Confidence 68999998 5666667777755543211 11235677666555554443
No 61
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=71.71 E-value=34 Score=35.71 Aligned_cols=48 Identities=15% Similarity=0.244 Sum_probs=25.8
Q ss_pred HHHHHHHHHhhcccC-CCCCCcccccchhHHHHHHHHHHHHHHHHHhhh
Q 019892 236 VLSILQILAFFLRPS-KDSKFRRFWNWYHHWFGRLALFFASVNIVLGIQ 283 (334)
Q Consensus 236 ~l~~~Q~~~g~~r~~-~~~~~r~~~~~~H~~~G~~~~~lg~~~i~~G~~ 283 (334)
++.++|.+.|....- ..-+.+....-+-..+|+.++++|.+-..++..
T Consensus 451 ~iGvi~i~~g~~l~~~~~~~~~~~~~a~~~~~~w~l~~~g~~~~~~~~~ 499 (646)
T PRK05771 451 LIGVIHLFLGLLLGFINNVRKGDYKDAFLAQLGWLLILLGILLIVLGGF 499 (646)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 455678777753211 111112222334445788888888877776643
No 62
>PF10951 DUF2776: Protein of unknown function (DUF2776); InterPro: IPR021240 This bacterial family of proteins has no known function.
Probab=70.60 E-value=12 Score=34.82 Aligned_cols=86 Identities=21% Similarity=0.332 Sum_probs=54.3
Q ss_pred hHHHHHHHHHHHHHHhheeeecccccc-CCCCcccchhhhHHHHHHHHHHHHHhhcccCC---CCCCcccccchhHHHHH
Q 019892 193 AIIQLVGFIFGLATVLLGIQLYNKLNV-KNANISAHRGIGIFILVLSILQILAFFLRPSK---DSKFRRFWNWYHHWFGR 268 (334)
Q Consensus 193 ~~~q~~~~~~~i~g~~l~~~~~~~~~~-~~~~~~~H~~lG~~~~~l~~~Q~~~g~~r~~~---~~~~r~~~~~~H~~~G~ 268 (334)
..+-.+..++.++|++-++....+... ..++.--|-.+|+.+++-.++-.+.-+.|.-+ ..+-|+.|. .
T Consensus 155 ~~Liav~~~~~li~~iw~~~Ll~~~~~~p~y~VAGhVm~Gla~iCtsLIaLVAtI~RQirN~ys~~Er~~W~-------~ 227 (347)
T PF10951_consen 155 NILIAVPILCALIGWIWAIVLLSSSDEHPAYFVAGHVMFGLACICTSLIALVATIARQIRNTYSEKERWKWP-------K 227 (347)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCccceehhHHHhhHHHHHHHHHHHHHHHHHHHhccccHHHhhhhH-------H
Confidence 344455677777888777765433222 12355679999999988877777666665433 234455444 4
Q ss_pred HHHHHHHHHHHHhhhhc
Q 019892 269 LALFFASVNIVLGIQIG 285 (334)
Q Consensus 269 ~~~~lg~~~i~~G~~~~ 285 (334)
..+++|.+++..|+.+.
T Consensus 228 lVl~mGsi~~l~Gl~vl 244 (347)
T PF10951_consen 228 LVLVMGSISILWGLYVL 244 (347)
T ss_pred HHHHHhhHHHHhhhheE
Confidence 56677777777777665
No 63
>PF10856 DUF2678: Protein of unknown function (DUF2678); InterPro: IPR022564 This family of proteins has no known function.
Probab=69.86 E-value=14 Score=29.61 Aligned_cols=57 Identities=18% Similarity=0.225 Sum_probs=38.9
Q ss_pred CcccchhhhHHHHHHHHHHHHHhhcccCCCCCCcccccchhHHHHHHHHHHHHHHHHHhhhhc
Q 019892 223 NISAHRGIGIFILVLSILQILAFFLRPSKDSKFRRFWNWYHHWFGRLALFFASVNIVLGIQIG 285 (334)
Q Consensus 223 ~~~~H~~lG~~~~~l~~~Q~~~g~~r~~~~~~~r~~~~~~H~~~G~~~~~lg~~~i~~G~~~~ 285 (334)
..-.|-++|.++.+++++-.+.++++|.+.. ++.|.+++..+++..+.++.+=...-
T Consensus 27 ~riinliiG~vT~l~VLvtii~afvf~~~~p------~p~~iffavcI~l~~~s~~lLI~WYR 83 (118)
T PF10856_consen 27 DRIINLIIGAVTSLFVLVTIISAFVFPQDPP------KPLHIFFAVCILLICISAILLIFWYR 83 (118)
T ss_pred cEEEEeehHHHHHHHHHHHHhheEEecCCCC------CceEEehHHHHHHHHHHHHhheeehh
Confidence 3456777888888887777777777765432 24677777777777777776655544
No 64
>PF10856 DUF2678: Protein of unknown function (DUF2678); InterPro: IPR022564 This family of proteins has no known function.
Probab=68.97 E-value=6.3 Score=31.49 Aligned_cols=64 Identities=14% Similarity=0.329 Sum_probs=39.7
Q ss_pred cchhHHHHHHHHHHHHHHHHHhhhhccCC-CcchhhHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCcc
Q 019892 260 NWYHHWFGRLALFFASVNIVLGIQIGYAG-NEWKIGYGFLLAVVLLAVIVLETLSWMKKRSDKTTAPPTFQ 329 (334)
Q Consensus 260 ~~~H~~~G~~~~~lg~~~i~~G~~~~~~~-~~~~~~y~~~~~~~~~~~~~le~~~~~~~r~~~~~~~~~~~ 329 (334)
+.+|..+|-++.++-.+++..++.....+ .+.-+.+.+-+.+.++..+. ...|.|+++ +-|+||
T Consensus 28 riinliiG~vT~l~VLvtii~afvf~~~~p~p~~iffavcI~l~~~s~~l--LI~WYR~gd----l~Pkfr 92 (118)
T PF10856_consen 28 RIINLIIGAVTSLFVLVTIISAFVFPQDPPKPLHIFFAVCILLICISAIL--LIFWYRQGD----LDPKFR 92 (118)
T ss_pred EEEEeehHHHHHHHHHHHHhheEEecCCCCCceEEehHHHHHHHHHHHHh--heeehhcCC----CChhHH
Confidence 57899999999999999999999888653 33333333323222222222 234555544 456665
No 65
>PRK10179 formate dehydrogenase-N subunit gamma; Provisional
Probab=66.85 E-value=20 Score=32.01 Aligned_cols=30 Identities=17% Similarity=-0.022 Sum_probs=26.4
Q ss_pred cccccchhHHHHHHHHHHHHHHHHHhhhhc
Q 019892 256 RRFWNWYHHWFGRLALFFASVNIVLGIQIG 285 (334)
Q Consensus 256 r~~~~~~H~~~G~~~~~lg~~~i~~G~~~~ 285 (334)
...+|...+.....+++++.+.+.+|+.++
T Consensus 106 ~gk~N~~QKl~y~~i~~~~~~~i~TGl~l~ 135 (217)
T PRK10179 106 VGKYNAGQKMMFWSIMSMIFVLLVTGVIIW 135 (217)
T ss_pred ccccCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345899999999999999999999999886
No 66
>COG3247 HdeD Uncharacterized conserved protein [Function unknown]
Probab=66.77 E-value=88 Score=27.30 Aligned_cols=72 Identities=18% Similarity=0.210 Sum_probs=37.6
Q ss_pred HHHHHHHHHHhheeeeccccccCCCCcccchhhhHHHHHHHHHHHHHhhc-ccCCCCCCcccccchhHHHHHHHHHHHHH
Q 019892 198 VGFIFGLATVLLGIQLYNKLNVKNANISAHRGIGIFILVLSILQILAFFL-RPSKDSKFRRFWNWYHHWFGRLALFFASV 276 (334)
Q Consensus 198 ~~~~~~i~g~~l~~~~~~~~~~~~~~~~~H~~lG~~~~~l~~~Q~~~g~~-r~~~~~~~r~~~~~~H~~~G~~~~~lg~~ 276 (334)
.+.+..++|.+..+..... ....=..+++...+..++|.+.++- |+.+ + ..-..+.|++
T Consensus 81 ~Gil~i~~gil~~~~~~~~------~~~l~~lia~~~i~~GI~ri~~~~~~~~~~-G-------------~~w~ii~Gvl 140 (185)
T COG3247 81 SGILSILLGILAGFNPGLG------ALVLTYLIAIWFIASGILRIVVAFRLRSLP-G-------------WWWMIISGVL 140 (185)
T ss_pred HHHHHHHHHHHHHHhhhHH------HHHHHHHHHHHHHHHHHHHHHHHHHccccC-C-------------cHHHHHHHHH
Confidence 3444445555554433211 1123335555555666666666643 2222 1 1235677888
Q ss_pred HHHHhhhhccCCC
Q 019892 277 NIVLGIQIGYAGN 289 (334)
Q Consensus 277 ~i~~G~~~~~~~~ 289 (334)
.+..|+.+...|.
T Consensus 141 ~ii~g~ill~~P~ 153 (185)
T COG3247 141 GIIAGLILLFNPV 153 (185)
T ss_pred HHHHHHHHHHccH
Confidence 8888887776654
No 67
>PF03929 PepSY_TM: PepSY-associated TM helix; InterPro: IPR005625 This domain represents a conserved transmembrane (TM) helix that is found in bacterial proteins. Coil residues are significantly more conserved than other residues and are frequently found within channels and transporters, where they introduce the flexibility and polarity required for transport across the membrane []. This TM helix associates with PepSY (peptidase (M4) and YpeB of subtilis). PepSY is a repeated region first identified in Thermoanaerobacter tengcongensis. The PepSY domain functions in the control of M4 peptidases through their propeptide and in the germination of spores. It may also play a part in regulating protease activity [].
Probab=65.26 E-value=11 Score=21.97 Aligned_cols=24 Identities=33% Similarity=0.653 Sum_probs=13.3
Q ss_pred cchhHHHHHHHHHHHHHHHHHhhh
Q 019892 260 NWYHHWFGRLALFFASVNIVLGIQ 283 (334)
Q Consensus 260 ~~~H~~~G~~~~~lg~~~i~~G~~ 283 (334)
+.+|+|++-+.-++=++-+.+|+.
T Consensus 2 ~~LH~w~~~i~al~~lv~~iTGl~ 25 (27)
T PF03929_consen 2 NDLHKWFGDIFALFMLVFAITGLI 25 (27)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666665555555555555543
No 68
>PLN02631 ferric-chelate reductase
Probab=65.03 E-value=25 Score=37.17 Aligned_cols=63 Identities=17% Similarity=0.200 Sum_probs=33.5
Q ss_pred CCcccchhhhHHHHHHHHHHHHHhhcc---cCCCCCCccccc--chhHHHHHHHHHHHHHHHHHhhhhc
Q 019892 222 ANISAHRGIGIFILVLSILQILAFFLR---PSKDSKFRRFWN--WYHHWFGRLALFFASVNIVLGIQIG 285 (334)
Q Consensus 222 ~~~~~H~~lG~~~~~l~~~Q~~~g~~r---~~~~~~~r~~~~--~~H~~~G~~~~~lg~~~i~~G~~~~ 285 (334)
.+...|+++|-++++++++-.+..... .+.-. .+..|+ +.-.+.|.++++++.+-+++.+...
T Consensus 187 ~~i~yHRWlGri~~~la~iH~i~y~i~~~~~~~~~-~~~~w~~~~~~~~~GviA~v~~~lm~~~Sl~~~ 254 (699)
T PLN02631 187 SSIKYHIWLGHVSNFLFLVHTVVFLIYWAMINKLM-ETFAWNPTYVPNLAGTIAMVIGIAMWVTSLPSF 254 (699)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhh-hhhhcccccchHHHHHHHHHHHHHHHHhccHHH
Confidence 466778888888888887776654321 11100 011111 1122567777666666666555433
No 69
>PF09600 Cyd_oper_YbgE: Cyd operon protein YbgE (Cyd_oper_YbgE); InterPro: IPR011846 This entry describes a small protein of unknown function, about 100 amino acids in length, essentially always found in an operon with CydAB, subunits of the cytochrome d terminal oxidase. It appears to be an integral membrane protein. It is found so far only in the Proteobacteria [].
Probab=64.81 E-value=16 Score=27.50 Aligned_cols=52 Identities=10% Similarity=0.185 Sum_probs=36.6
Q ss_pred CCcccchhhhHHHHHHHHHHHHHhh-cccCCCCCCccccc-chhHHHHHHHHHHHHHHH
Q 019892 222 ANISAHRGIGIFILVLSILQILAFF-LRPSKDSKFRRFWN-WYHHWFGRLALFFASVNI 278 (334)
Q Consensus 222 ~~~~~H~~lG~~~~~l~~~Q~~~g~-~r~~~~~~~r~~~~-~~H~~~G~~~~~lg~~~i 278 (334)
+..+...+.+..++..++.-++.|+ ++|++ ..|+ ..+-+.++.+++.+.+..
T Consensus 27 ~~g~~~~~~~~ll~wavc~~~IhGvGF~Pr~-----~~Wr~lFsP~~a~~il~~~l~~~ 80 (82)
T PF09600_consen 27 ATGGFSHWLAPLLIWAVCAGWIHGVGFRPRS-----WIWRLLFSPLIAWIILIYGLILY 80 (82)
T ss_pred HcCCCcHHHHHHHHHHHHHHHhhccccchhH-----HHHHHHHhHHHHHHHHHHHHHHH
Confidence 3557778889999988888888776 55543 4555 356678888887776643
No 70
>TIGR02112 cyd_oper_ybgE cyd operon protein YbgE. This model describes a small protein of unknown function, about 100 amino acids in length, essentially always found in an operon with CydAB, subunits of the cytochrome d terminal oxidase. It appears to be an integral membrane protein. It is found so far only in the Proteobacteria.
Probab=64.67 E-value=15 Score=28.21 Aligned_cols=50 Identities=12% Similarity=0.303 Sum_probs=35.6
Q ss_pred CCcccchhhhHHHHHHHHHHHHHhh-cccCCCCCCccccc-chhHHHHHHHHHHHHH
Q 019892 222 ANISAHRGIGIFILVLSILQILAFF-LRPSKDSKFRRFWN-WYHHWFGRLALFFASV 276 (334)
Q Consensus 222 ~~~~~H~~lG~~~~~l~~~Q~~~g~-~r~~~~~~~r~~~~-~~H~~~G~~~~~lg~~ 276 (334)
+..+...+.|..++..++.-++.|+ +||+. ..|+ ..+-++|+.+++.+..
T Consensus 38 ~~g~~~~~~~~lliwavc~g~IhGVGF~Pr~-----~~Wq~lF~P~~a~~iLi~~l~ 89 (93)
T TIGR02112 38 AIGGFNAVLALLMIWAVCILWIHGVGFRPRS-----TLWQLLFSPILGYIILIYLLI 89 (93)
T ss_pred HcCCccHHHHHHHHHHHHHHHHhhccccchH-----HHHHHHHhhHHHHHHHHHHHH
Confidence 3557778999999998888888886 56544 4555 4566788877765543
No 71
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=64.08 E-value=9.7 Score=30.89 Aligned_cols=26 Identities=15% Similarity=0.376 Sum_probs=11.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhCCC
Q 019892 293 IGYGFLLAVVLLAVIVLETLSWMKKRSD 320 (334)
Q Consensus 293 ~~y~~~~~~~~~~~~~le~~~~~~~r~~ 320 (334)
|.+|+++++++++.++ .+..+|+||+
T Consensus 69 Ii~gv~aGvIg~Illi--~y~irR~~Kk 94 (122)
T PF01102_consen 69 IIFGVMAGVIGIILLI--SYCIRRLRKK 94 (122)
T ss_dssp HHHHHHHHHHHHHHHH--HHHHHHHS--
T ss_pred hhHHHHHHHHHHHHHH--HHHHHHHhcc
Confidence 4556555554444333 2334444443
No 72
>PRK10588 hypothetical protein; Provisional
Probab=62.77 E-value=19 Score=27.91 Aligned_cols=75 Identities=11% Similarity=0.178 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHhheeeeccccccCCCCcccchhhhHHHHHHHHHHHHHhh-cccCCCCCCccccc-chhHHHHHHHHH
Q 019892 195 IQLVGFIFGLATVLLGIQLYNKLNVKNANISAHRGIGIFILVLSILQILAFF-LRPSKDSKFRRFWN-WYHHWFGRLALF 272 (334)
Q Consensus 195 ~q~~~~~~~i~g~~l~~~~~~~~~~~~~~~~~H~~lG~~~~~l~~~Q~~~g~-~r~~~~~~~r~~~~-~~H~~~G~~~~~ 272 (334)
++.+++++++.=.++.+..-+..- ++..+...++|..++..++.-++.|+ ++|++ ..|+ ..|-++|+.+++
T Consensus 17 lRaLSliLAl~la~~v~w~P~~fa--~~~~~~~~~~~~lliwavc~g~IhGVGF~Pr~-----~~Wq~lFsP~~a~~iL~ 89 (97)
T PRK10588 17 LRALSLVMALLLAGCMFWDPSRFA--AKTSSLEIWHGLLLMWAVCAGVIHGVGFRPQK-----VLWQGIFCPLPADIVLI 89 (97)
T ss_pred HHHHHHHHHHHHHHHHHcCHHHHH--HHcCCccHHHHHHHHHHHHHHHhhhcccchhH-----HHHHHHHhhHHHHHHHH
Confidence 444555544433333233222222 23567788999999988888888876 55543 5565 467788888877
Q ss_pred HHHH
Q 019892 273 FASV 276 (334)
Q Consensus 273 lg~~ 276 (334)
.|..
T Consensus 90 ~g~~ 93 (97)
T PRK10588 90 VGLI 93 (97)
T ss_pred HHHH
Confidence 6654
No 73
>COG3038 CybB Cytochrome B561 [Energy production and conversion]
Probab=61.91 E-value=75 Score=27.63 Aligned_cols=62 Identities=11% Similarity=0.010 Sum_probs=45.2
Q ss_pred cchhhhHHHHHHHHHHHHHhhcccCC--CCCCcccccchhHHHHHHHHHHHHHHHHHhhhhccC
Q 019892 226 AHRGIGIFILVLSILQILAFFLRPSK--DSKFRRFWNWYHHWFGRLALFFASVNIVLGIQIGYA 287 (334)
Q Consensus 226 ~H~~lG~~~~~l~~~Q~~~g~~r~~~--~~~~r~~~~~~H~~~G~~~~~lg~~~i~~G~~~~~~ 287 (334)
.=..+=..+.++++.|...|+++... ....|.....+|+.+|.++++|.+.=++..+....+
T Consensus 11 ~~i~lHWl~allv~~~~~~g~~~~~~~~~~~~~~~~~~~Hks~Gi~vl~L~v~Rl~wrl~~~~p 74 (181)
T COG3038 11 VQIALHWLMALLVIGAFALGELMGFLPRGPGLYFLLYELHKSIGILVLALMVLRLLWRLRNPAP 74 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 33444566677788888888775332 222455667899999999999999999998887654
No 74
>KOG2082 consensus K+/Cl- cotransporter KCC1 and related transporters [Inorganic ion transport and metabolism]
Probab=59.96 E-value=42 Score=35.64 Aligned_cols=23 Identities=17% Similarity=0.375 Sum_probs=16.7
Q ss_pred CCCCcccccchhHHHHHHHHHHH
Q 019892 252 DSKFRRFWNWYHHWFGRLALFFA 274 (334)
Q Consensus 252 ~~~~r~~~~~~H~~~G~~~~~lg 274 (334)
..++||.|+++||.+-.+-..|-
T Consensus 596 tPnWRPRfkyyHW~LSflG~sLC 618 (1075)
T KOG2082|consen 596 TPNWRPRFKYYHWSLSFLGASLC 618 (1075)
T ss_pred CCCCCccchhhhhHHHHHHHHHH
Confidence 56799999999997755443333
No 75
>CHL00070 petB cytochrome b6
Probab=58.96 E-value=43 Score=29.95 Aligned_cols=86 Identities=12% Similarity=0.079 Sum_probs=58.7
Q ss_pred HHHHHHHHhheeeecccccc----------C----CCCcccchhhhHHHHHHHHHHHHHhhcccCCCCCCcccccchhHH
Q 019892 200 FIFGLATVLLGIQLYNKLNV----------K----NANISAHRGIGIFILVLSILQILAFFLRPSKDSKFRRFWNWYHHW 265 (334)
Q Consensus 200 ~~~~i~g~~l~~~~~~~~~~----------~----~~~~~~H~~lG~~~~~l~~~Q~~~g~~r~~~~~~~r~~~~~~H~~ 265 (334)
++..+.|+.+++.+..+... + .-..+.|.+-.-+.++++.+..+-+++...=+.+ | ..-+.
T Consensus 45 ~iqiiTGi~L~~~Y~p~~~~Af~Sv~~I~~ev~~Gwl~R~~H~~gas~~~~~~~lH~~r~~~~gsYk~p-r----e~~W~ 119 (215)
T CHL00070 45 LVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGFKKP-R----ELTWV 119 (215)
T ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC-c----ccCcH
Confidence 44555788888755432110 0 1245789888888888888888888764322111 1 23478
Q ss_pred HHHHHHHHHHHHHHHhhhhccCCCc
Q 019892 266 FGRLALFFASVNIVLGIQIGYAGNE 290 (334)
Q Consensus 266 ~G~~~~~lg~~~i~~G~~~~~~~~~ 290 (334)
.|.+++++.++..++|..+.-+..+
T Consensus 120 ~Gv~l~~l~m~~af~GY~Lpw~q~s 144 (215)
T CHL00070 120 TGVVLAVLTVSFGVTGYSLPWDQIG 144 (215)
T ss_pred HHHHHHHHHHHHHHccccCCcchhh
Confidence 9999999999999999999876554
No 76
>PRK03735 cytochrome b6; Provisional
Probab=58.59 E-value=32 Score=30.91 Aligned_cols=86 Identities=15% Similarity=0.142 Sum_probs=57.6
Q ss_pred HHHHHHHHhheeeeccccc----------cC----CCCcccchhhhHHHHHHHHHHHHHhhcccCCCCCCcccccchhHH
Q 019892 200 FIFGLATVLLGIQLYNKLN----------VK----NANISAHRGIGIFILVLSILQILAFFLRPSKDSKFRRFWNWYHHW 265 (334)
Q Consensus 200 ~~~~i~g~~l~~~~~~~~~----------~~----~~~~~~H~~lG~~~~~l~~~Q~~~g~~r~~~~~~~r~~~~~~H~~ 265 (334)
++..+.|+.+++.+..+.. .+ .-..+.|.+-.-+.++++.++..-+++...=+.+ | ..-++
T Consensus 53 ~iqi~TGi~L~~~Y~P~~~~A~~Sv~~I~~ev~~GwliR~~H~~gas~~~~~~~lH~~r~~~~gsYk~p-r----e~~W~ 127 (223)
T PRK03735 53 VIQILSGMFLTMYYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRVFFTGGYKKP-R----ELNWV 127 (223)
T ss_pred HHHHHHHHHHHHHHCCCchhHHHHHHHHHcccccHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHcCC-C----CceeH
Confidence 4445578888876543211 00 1245788888888888888888877664221111 1 23467
Q ss_pred HHHHHHHHHHHHHHHhhhhccCCCc
Q 019892 266 FGRLALFFASVNIVLGIQIGYAGNE 290 (334)
Q Consensus 266 ~G~~~~~lg~~~i~~G~~~~~~~~~ 290 (334)
.|.+++++.+...++|..+.-+..+
T Consensus 128 ~Gv~l~~l~~~~af~GY~Lpw~q~s 152 (223)
T PRK03735 128 VGVLIFFVTVGLGFTGYLLPWDQKA 152 (223)
T ss_pred HHHHHHHHHHHHHhccccCCcccch
Confidence 9999999999999999999776554
No 77
>PLN02844 oxidoreductase/ferric-chelate reductase
Probab=58.52 E-value=36 Score=36.10 Aligned_cols=24 Identities=13% Similarity=0.198 Sum_probs=18.5
Q ss_pred CCcccchhhhHHHHHHHHHHHHHh
Q 019892 222 ANISAHRGIGIFILVLSILQILAF 245 (334)
Q Consensus 222 ~~~~~H~~lG~~~~~l~~~Q~~~g 245 (334)
++...|.++|-+++++.++-.+..
T Consensus 190 ~~i~fHrWlGr~~~llallH~i~~ 213 (722)
T PLN02844 190 ASVRYHVWLGTSMIFFATVHGAST 213 (722)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456789999988888888877644
No 78
>PRK10639 formate dehydrogenase-O subunit gamma; Provisional
Probab=57.51 E-value=49 Score=29.24 Aligned_cols=30 Identities=20% Similarity=0.198 Sum_probs=25.3
Q ss_pred cccccchhHHHHHHHHHHHHHHHHHhhhhc
Q 019892 256 RRFWNWYHHWFGRLALFFASVNIVLGIQIG 285 (334)
Q Consensus 256 r~~~~~~H~~~G~~~~~lg~~~i~~G~~~~ 285 (334)
...+|...+..-.++++++.+.+.+|+.+.
T Consensus 104 ~~kyN~~qk~~y~~~~~~~~~~~iTGl~l~ 133 (211)
T PRK10639 104 TGRYNFGQKCVFWAAIIFLVLLLVSGVIIW 133 (211)
T ss_pred CCCcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345788899888889998999999999875
No 79
>PRK10209 acid-resistance membrane protein; Provisional
Probab=55.39 E-value=96 Score=26.95 Aligned_cols=75 Identities=15% Similarity=0.230 Sum_probs=34.8
Q ss_pred hhhhHHHHHHHHHHHHHhhcccCCCCCCcccccchhHHHHHHHHHHHHHHHHHhhhhccCCCcchhhHHHHHHHHHHHHH
Q 019892 228 RGIGIFILVLSILQILAFFLRPSKDSKFRRFWNWYHHWFGRLALFFASVNIVLGIQIGYAGNEWKIGYGFLLAVVLLAVI 307 (334)
Q Consensus 228 ~~lG~~~~~l~~~Q~~~g~~r~~~~~~~r~~~~~~H~~~G~~~~~lg~~~i~~G~~~~~~~~~~~~~y~~~~~~~~~~~~ 307 (334)
..+|..+++..++|.+..+ +.+++ + . +.....+++|+..+..|+.....|..-......+++.++++.-
T Consensus 51 ~~~g~~ll~~Gi~~l~~~~-~~~~~---~----~---~~~~~~ll~Gil~ii~Gil~l~~P~~~~~~l~~l~g~~~iv~G 119 (190)
T PRK10209 51 TVVGILLICSGIALIVGLF-ANRSH---N----F---WPMLSGILLGVAYLVLGYFFIRNPEVGMFSLAAFIAGLFCVGG 119 (190)
T ss_pred HHHHHHHHHHHHHHHHHHH-Hcccc---c----h---HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 4677777777777766433 22111 0 0 1111224455555666655544443222333344444444444
Q ss_pred HHHHHH
Q 019892 308 VLETLS 313 (334)
Q Consensus 308 ~le~~~ 313 (334)
+.++..
T Consensus 120 i~~i~~ 125 (190)
T PRK10209 120 IIRLMS 125 (190)
T ss_pred HHHHHH
Confidence 444444
No 80
>PF13706 PepSY_TM_3: PepSY-associated TM helix
Probab=55.28 E-value=12 Score=23.54 Aligned_cols=24 Identities=21% Similarity=0.203 Sum_probs=20.3
Q ss_pred CcccchhhhHHHHHHHHHHHHHhh
Q 019892 223 NISAHRGIGIFILVLSILQILAFF 246 (334)
Q Consensus 223 ~~~~H~~lG~~~~~l~~~Q~~~g~ 246 (334)
....|.++|+++-.++++-.+.|.
T Consensus 4 ~~~~H~W~Gl~~g~~l~~~~~tG~ 27 (37)
T PF13706_consen 4 LRKLHRWLGLILGLLLFVIFLTGA 27 (37)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhH
Confidence 457899999999999998888874
No 81
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter. Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain.
Probab=53.08 E-value=1.1e+02 Score=30.51 Aligned_cols=30 Identities=10% Similarity=-0.278 Sum_probs=15.0
Q ss_pred CcccccchhHHHHHHHHHHHHHHHHHhhhh
Q 019892 255 FRRFWNWYHHWFGRLALFFASVNIVLGIQI 284 (334)
Q Consensus 255 ~r~~~~~~H~~~G~~~~~lg~~~i~~G~~~ 284 (334)
.|++.-+.+.+.++.+-.++++-+...+.+
T Consensus 390 ~rpf~~p~g~~g~~~~~~~~~~~~~~~~~~ 419 (474)
T TIGR03813 390 PRPYRIPGGLAGMWFIGGLGFVGSALAFVL 419 (474)
T ss_pred CCCeEecCCccchhHHHHHHHHHHHHHHhe
Confidence 344444455554555555555555554443
No 82
>PF01654 Bac_Ubq_Cox: Bacterial Cytochrome Ubiquinol Oxidase; InterPro: IPR002585 These proteins are cytochrome bd type terminal oxidases that catalyse quinol dependent, Na+ independent oxygen uptake []. Members of this family are integral membrane proteins and contain a protoheame IX centre B558. Cytochrome bd may play an important role in microaerobic nitrogen fixation in the enteric bacterium Klebsiella pneumoniae, where it is expressed under all conditions that permit diazotrophy []. Subunit I binds a single b-haem, through ligands at His186 and Met393 (using P0ABJ9 from SWISSPROT numbering). In addition His19 is a ligand for the haem b found in subunit II (IPR003317 from INTERPRO).; GO: 0016020 membrane
Probab=53.04 E-value=1.2e+02 Score=30.11 Aligned_cols=155 Identities=15% Similarity=0.095 Sum_probs=73.6
Q ss_pred hhhhHHHHHHHHHHHHhhhhhhhhhccCCCChhhhhhhHHHHHHHHHHHH----HHhheeeeccccccCCCCcccchhhh
Q 019892 156 KKNHGALGMIGWGIILPVGAIIPRYFKHKDPLWYYLHAIIQLVGFIFGLA----TVLLGIQLYNKLNVKNANISAHRGIG 231 (334)
Q Consensus 156 ~~~Hg~lm~~aw~~l~p~gil~aR~~k~~~~~w~~~H~~~q~~~~~~~i~----g~~l~~~~~~~~~~~~~~~~~H~~lG 231 (334)
...|-++-.++-++-+=+.++=.++.|..++.|.++=+...-+-.+...+ |.++.+.....+++ .-..+|
T Consensus 10 ~~~Hi~fv~~tiGl~~~~~i~e~~~~rt~d~~y~~lar~w~k~~~i~fa~GvvtG~~~~f~~g~~wp~------f~~~~g 83 (436)
T PF01654_consen 10 AGFHILFVPLTIGLALLLAILETLYYRTGDPRYDRLARFWGKLFAINFAVGVVTGTVMEFQFGTNWPR------FSRFVG 83 (436)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH------HHHHHH
Confidence 34666665544444444445555778887776654433322221222223 33333333333331 222333
Q ss_pred HHHHHH--------HHHHHH-Hhhc-ccCCCCCCcccccchhHHHHHHHHHHHHHHHHH------------hhhhc-cCC
Q 019892 232 IFILVL--------SILQIL-AFFL-RPSKDSKFRRFWNWYHHWFGRLALFFASVNIVL------------GIQIG-YAG 288 (334)
Q Consensus 232 ~~~~~l--------~~~Q~~-~g~~-r~~~~~~~r~~~~~~H~~~G~~~~~lg~~~i~~------------G~~~~-~~~ 288 (334)
=+.... ++++.. +|++ .... +.-+..|..+|...-+-+....+. |..+. .++
T Consensus 84 ~vfg~pla~E~l~aFflE~~flgiy~fgW~-----rl~~~~H~~~~~~vaig~~~Sa~~I~~~nswM~tP~G~~~~~~~g 158 (436)
T PF01654_consen 84 DVFGPPLAIEGLFAFFLEATFLGIYLFGWD-----RLSPKVHLFIGWLVAIGAWLSAFWILAANSWMQTPVGFELNPVNG 158 (436)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-----hccHHHHHHHHHHHHHHHHHHHHHHHHhchhccCCCeeEEEcCCC
Confidence 333333 333432 3332 2111 224568999998877666544432 33331 011
Q ss_pred C--------------cc-hhhHHHHHHHHHHHHHHHHHHHHhhhCCCC
Q 019892 289 N--------------EW-KIGYGFLLAVVLLAVIVLETLSWMKKRSDK 321 (334)
Q Consensus 289 ~--------------~~-~~~y~~~~~~~~~~~~~le~~~~~~~r~~~ 321 (334)
+ .| .....+..+..+..++++-+..|+..|++.
T Consensus 159 ~~~~~~~~~~~~NP~~~~~~~H~~~aa~~~g~f~v~~v~A~~llr~~~ 206 (436)
T PF01654_consen 159 RAELTDFWAAFFNPSFWPRFLHMLLAAYLTGGFVVAGVSAYYLLRGRD 206 (436)
T ss_pred eEEeccHHHHhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 1 01 123345556666777777788888777553
No 83
>PF10129 OpgC_C: OpgC protein; InterPro: IPR014550 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=52.06 E-value=1.2e+02 Score=29.30 Aligned_cols=54 Identities=6% Similarity=0.137 Sum_probs=39.1
Q ss_pred hhhHHHHHHHHHHHHhhhhhhhhhccCCCChhhhhhhHHHHHHHHHHHHHHhhee
Q 019892 157 KNHGALGMIGWGIILPVGAIIPRYFKHKDPLWYYLHAIIQLVGFIFGLATVLLGI 211 (334)
Q Consensus 157 ~~Hg~lm~~aw~~l~p~gil~aR~~k~~~~~w~~~H~~~q~~~~~~~i~g~~l~~ 211 (334)
.-+..+.-.||-+++-+|+....+.+.. +.++..|..+..++.+..+.++....
T Consensus 186 ~~~w~FNP~aWQllFv~G~~~g~~~~~~-~~~~~~~~~l~~la~~~~l~~~~~~~ 239 (358)
T PF10129_consen 186 GGGWFFNPFAWQLLFVLGLWLGWGWRRG-RRFLPRRRWLVWLAVAYVLFAFFWRL 239 (358)
T ss_pred ccccccChHHHHHHHHHHHHHhcccccc-ccccccchHHHHHHHHHHHHHHHHHH
Confidence 3467888899999999999888766553 34557788888877766665555543
No 84
>cd00284 Cytochrome_b_N Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.
Probab=51.54 E-value=65 Score=28.42 Aligned_cols=87 Identities=15% Similarity=0.120 Sum_probs=56.9
Q ss_pred HHHHHHHHHhheeeeccccc----------cC----CCCcccchhhhHHHHHHHHHHHHHhhcccCCCCCCcccccchhH
Q 019892 199 GFIFGLATVLLGIQLYNKLN----------VK----NANISAHRGIGIFILVLSILQILAFFLRPSKDSKFRRFWNWYHH 264 (334)
Q Consensus 199 ~~~~~i~g~~l~~~~~~~~~----------~~----~~~~~~H~~lG~~~~~l~~~Q~~~g~~r~~~~~~~r~~~~~~H~ 264 (334)
-.+..+.|+.+++....+.. .+ .-..+.|.+-.-..++++.+..+-+++...-+++ | ..-|
T Consensus 33 ~~iqiiTGi~La~~Y~p~~~~A~~Sv~~i~~ev~~G~liR~~H~~gas~~~~~~~lH~~r~~~~gsY~~p-r----e~~W 107 (200)
T cd00284 33 LVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFLMLYLHIFRGLYYGSYKKP-R----ELTW 107 (200)
T ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch-h----HHHH
Confidence 34455678888876543311 00 1245678777777777788887777654221111 1 2457
Q ss_pred HHHHHHHHHHHHHHHHhhhhccCCCc
Q 019892 265 WFGRLALFFASVNIVLGIQIGYAGNE 290 (334)
Q Consensus 265 ~~G~~~~~lg~~~i~~G~~~~~~~~~ 290 (334)
+.|.+++++.++..++|..+.-+..+
T Consensus 108 ~~G~~l~~l~~~~af~GY~Lpw~q~s 133 (200)
T cd00284 108 VIGVILLLLTMATAFMGYVLPWGQMS 133 (200)
T ss_pred HHHHHHHHHHHHHHHcccccCchhhh
Confidence 89999999999999999988866544
No 85
>KOG1608 consensus Protein transporter of the TRAM (translocating chain-associating membrane) superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=51.40 E-value=93 Score=29.21 Aligned_cols=59 Identities=19% Similarity=0.241 Sum_probs=37.3
Q ss_pred hhhHHHHHH-HHHHHHHhhcc-----cCCCCCCcccccchhHHHHHHHHHHHHHHHHHhhhhccC
Q 019892 229 GIGIFILVL-SILQILAFFLR-----PSKDSKFRRFWNWYHHWFGRLALFFASVNIVLGIQIGYA 287 (334)
Q Consensus 229 ~lG~~~~~l-~~~Q~~~g~~r-----~~~~~~~r~~~~~~H~~~G~~~~~lg~~~i~~G~~~~~~ 287 (334)
-+|++++.| .+.|.+.-..| ..+..|.+..|+-.-...-..++++|+.+++.|+.-..+
T Consensus 217 rlgLvLl~LhYftellfHi~rlfyf~dek~~k~fslwa~vF~l~Rl~tliiaVlt~gfgla~~en 281 (374)
T KOG1608|consen 217 RLGLVLLTLHYFTELLFHIARLFYFSDEKYQKLFSLWAAVFVLGRLGTLIIAVLTVGFGLAGAEN 281 (374)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHheecccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccc
Confidence 467777666 34555433222 233345567777666555567888999999999887654
No 86
>PF03729 DUF308: Short repeat of unknown function (DUF308); InterPro: IPR005325 This represents a group of short repeats that occurs in a limited number of membrane proteins. It may divide further in short repeats of around 7-10 residues of the pattern G-#-X(2)-#(2)-X (#=hydrophobic).
Probab=50.45 E-value=25 Score=24.63 Aligned_cols=20 Identities=5% Similarity=0.129 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHhhh
Q 019892 264 HWFGRLALFFASVNIVLGIQ 283 (334)
Q Consensus 264 ~~~G~~~~~lg~~~i~~G~~ 283 (334)
..+|...++-|+.++..++.
T Consensus 26 ~i~g~~~i~~Gi~~l~~~~~ 45 (72)
T PF03729_consen 26 IILGIWLIISGIFQLISAFR 45 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 44444444444444444444
No 87
>PF08507 COPI_assoc: COPI associated protein; InterPro: IPR013714 Proteins in this family co-localise with COPI vesicle coat proteins []. In yeast it is a Golgi membrane protein involved in vesicular trafficking, interacting with TVP18 [].
Probab=49.67 E-value=1.3e+02 Score=24.48 Aligned_cols=53 Identities=23% Similarity=0.396 Sum_probs=33.0
Q ss_pred CcccccchhHHHHHHHHHHHHHHHHHhhhhccCCCcchhhHHHHHHHHHHHHHHHHHHH
Q 019892 255 FRRFWNWYHHWFGRLALFFASVNIVLGIQIGYAGNEWKIGYGFLLAVVLLAVIVLETLS 313 (334)
Q Consensus 255 ~r~~~~~~H~~~G~~~~~lg~~~i~~G~~~~~~~~~~~~~y~~~~~~~~~~~~~le~~~ 313 (334)
.++.+..+..+.||.++.+=+..+.++.. .....-++++.+..++++.+....
T Consensus 57 i~~~~~FL~~~~GRGlfyif~G~l~~~~~------~~~~i~g~~~~~~G~~~i~l~~~~ 109 (136)
T PF08507_consen 57 IRKYFGFLYSYIGRGLFYIFLGTLCLGQS------ILSIIIGLLLFLVGVIYIILGFFC 109 (136)
T ss_pred HHHhHhHHHhHHHHHHHHHHHHHHHHhhH------HHHHHHHHHHHHHHHHHHHHHHHc
Confidence 66778888999999998776666666551 111233444445556666665444
No 88
>PF08114 PMP1_2: ATPase proteolipid family; InterPro: IPR012589 This family consists of small proteolipids associated with the plasma membrane H+ ATPase. Two proteolipids (PMP1 and PMP2) are associated with the ATPase and both genes are similarly expressed in the wild-type strain of yeast. No modification of the level of transcription of one PMP gene is detected in a strain deleted of the other. Though both proteolipids show similarity with other small proteolipids associated with other cation -transporting ATPases, their functions remain unclear [].
Probab=49.27 E-value=21 Score=23.02 Aligned_cols=14 Identities=7% Similarity=0.209 Sum_probs=9.8
Q ss_pred HHHHHhhhCCCCCC
Q 019892 310 ETLSWMKKRSDKTT 323 (334)
Q Consensus 310 e~~~~~~~r~~~~~ 323 (334)
-+++|..|+.+++|
T Consensus 29 iYRKw~aRkr~l~r 42 (43)
T PF08114_consen 29 IYRKWQARKRALQR 42 (43)
T ss_pred HHHHHHHHHHHHhc
Confidence 36788888766654
No 89
>PF11377 DUF3180: Protein of unknown function (DUF3180); InterPro: IPR021517 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently there is no known function.
Probab=49.20 E-value=1e+02 Score=25.38 Aligned_cols=26 Identities=12% Similarity=0.281 Sum_probs=11.9
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHh
Q 019892 290 EWKIGYGFLLAVVLLAVIVLETLSWM 315 (334)
Q Consensus 290 ~~~~~y~~~~~~~~~~~~~le~~~~~ 315 (334)
+|......++...+..++...+++++
T Consensus 30 p~~~~~~l~~la~~~~~~a~~vr~~~ 55 (138)
T PF11377_consen 30 PWTAGVTLLVLAAVELWLAWQVRRRI 55 (138)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34433333333444445555555555
No 90
>PF10361 DUF2434: Protein of unknown function (DUF2434); InterPro: IPR018830 This entry represents a family of proteins conserved in fungi. Their function is not known.
Probab=49.19 E-value=1.3e+02 Score=28.10 Aligned_cols=63 Identities=13% Similarity=0.317 Sum_probs=44.0
Q ss_pred CcccchhhhHHHHHHHHHHHHHhh--c-ccCC-----CCCCcccccchhHHHHHHHHHHHHHHHHHhhhhc
Q 019892 223 NISAHRGIGIFILVLSILQILAFF--L-RPSK-----DSKFRRFWNWYHHWFGRLALFFASVNIVLGIQIG 285 (334)
Q Consensus 223 ~~~~H~~lG~~~~~l~~~Q~~~g~--~-r~~~-----~~~~r~~~~~~H~~~G~~~~~lg~~~i~~G~~~~ 285 (334)
.-..|..+|++.-++..+-.++=+ + +|++ +++.+++=+..-++....+.++|.+.++..++.-
T Consensus 42 ~ig~rg~vGI~fav~f~i~lvltLvnL~KHG~~~lp~eKRf~~iGRRwqWyW~~fv~a~~~iS~f~~IDVD 112 (296)
T PF10361_consen 42 PIGTRGSVGIAFAVLFAIALVLTLVNLRKHGRLYLPLEKRFYPIGRRWQWYWMLFVCACGLISLFMSIDVD 112 (296)
T ss_pred cccccchhHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhcccccchhHHHHHHHHHHHHHHHhhheeeeec
Confidence 457899999988877655544332 2 3332 3334455566778899999999999999998874
No 91
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=47.11 E-value=19 Score=33.82 Aligned_cols=11 Identities=27% Similarity=0.214 Sum_probs=6.5
Q ss_pred HHHHhhhCCCC
Q 019892 311 TLSWMKKRSDK 321 (334)
Q Consensus 311 ~~~~~~~r~~~ 321 (334)
++-||+||++|
T Consensus 276 YLILRYRRKKK 286 (299)
T PF02009_consen 276 YLILRYRRKKK 286 (299)
T ss_pred HHHHHHHHHhh
Confidence 44566677555
No 92
>MTH00086 CYTB cytochrome b; Provisional
Probab=46.27 E-value=94 Score=30.04 Aligned_cols=84 Identities=11% Similarity=0.019 Sum_probs=55.1
Q ss_pred HHHHHHHHhheeeeccccc----------cC----CCCcccchhhhHHHHHHHHHHHHHhhcccCCCCCCcccccchhHH
Q 019892 200 FIFGLATVLLGIQLYNKLN----------VK----NANISAHRGIGIFILVLSILQILAFFLRPSKDSKFRRFWNWYHHW 265 (334)
Q Consensus 200 ~~~~i~g~~l~~~~~~~~~----------~~----~~~~~~H~~lG~~~~~l~~~Q~~~g~~r~~~~~~~r~~~~~~H~~ 265 (334)
++-.+.|+.+++....+.. .+ .-.+..|..-.-..++++.+...-|++...-+ |+ .=|.
T Consensus 31 ~iQiiTGi~L~~~Y~p~~~~Af~Sv~~I~~~v~~GwliR~~H~~gas~~f~~~ylHi~R~~~ygsy~---~~----~~W~ 103 (355)
T MTH00086 31 VFQILTGTFLAFYYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFFIFLYLHIFKGLFMMSYR---LK----KVWI 103 (355)
T ss_pred HHHHHHHHHHHhhhcCCchhHHHHHHHHhCcccccHHHHHHHHhHHHHHHHHHHHHHHHHHHHcccC---Cc----hHHH
Confidence 3345578888876543211 00 12346788777777777788777776542211 11 1278
Q ss_pred HHHHHHHHHHHHHHHhhhhccCCCc
Q 019892 266 FGRLALFFASVNIVLGIQIGYAGNE 290 (334)
Q Consensus 266 ~G~~~~~lg~~~i~~G~~~~~~~~~ 290 (334)
.|.+++++.+++.++|..+.-.+.+
T Consensus 104 ~Gv~l~~l~m~~af~GYvLpw~qms 128 (355)
T MTH00086 104 SGLTIYLLVMMEAFMGYVLVWAQMS 128 (355)
T ss_pred HhHHHHHHHHHHHHhhhhcccCchh
Confidence 9999999999999999999766544
No 93
>PF14358 DUF4405: Domain of unknown function (DUF4405)
Probab=45.70 E-value=58 Score=22.74 Aligned_cols=47 Identities=23% Similarity=0.445 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHhhc---ccCC----CCCCcccccchhHHHHHHHHHHHHHHH
Q 019892 232 IFILVLSILQILAFFL---RPSK----DSKFRRFWNWYHHWFGRLALFFASVNI 278 (334)
Q Consensus 232 ~~~~~l~~~Q~~~g~~---r~~~----~~~~r~~~~~~H~~~G~~~~~lg~~~i 278 (334)
+.+++.++.-.+.|++ .+.+ .+..|..|+.+|.+.|+..+++..+=+
T Consensus 7 ~~l~~~~~~~~iSGi~l~~~~~~~~~~~~~~~~~~~~iH~~~g~~~~~l~~~Hl 60 (64)
T PF14358_consen 7 LLLLVSFLVLAISGILLSFVPFPGLPFLGLNKHFWRNIHLWAGYLFLILIILHL 60 (64)
T ss_pred HHHHHHHHHHHHHHHHHhhhccccccccCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555566643 1222 234467888899999998888776543
No 94
>PRK03735 cytochrome b6; Provisional
Probab=45.57 E-value=51 Score=29.62 Aligned_cols=92 Identities=13% Similarity=0.137 Sum_probs=52.9
Q ss_pred hhhhHHHHHHHHHHHHhhhhhhhhhccCC---------------CChh--hhhhhHHHHHHHHHHHHHHhheeeeccccc
Q 019892 156 KKNHGALGMIGWGIILPVGAIIPRYFKHK---------------DPLW--YYLHAIIQLVGFIFGLATVLLGIQLYNKLN 218 (334)
Q Consensus 156 ~~~Hg~lm~~aw~~l~p~gil~aR~~k~~---------------~~~w--~~~H~~~q~~~~~~~i~g~~l~~~~~~~~~ 218 (334)
...=|.+..+++.+.+-.|++.+-++.+. .--| ..+|..--.+-++++.+=..=++. .+..+
T Consensus 41 ~~~~G~l~~~~~~iqi~TGi~L~~~Y~P~~~~A~~Sv~~I~~ev~~GwliR~~H~~gas~~~~~~~lH~~r~~~-~gsYk 119 (223)
T PRK03735 41 VYCFGGLTFFCFVIQILSGMFLTMYYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRVFF-TGGYK 119 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCchhHHHHHHHHHcccccHHHHHHHHhhhhHHHHHHHHHHHHHHHH-HHHHc
Confidence 34448899999999999999988766542 1123 244443221111111111111111 12222
Q ss_pred cCCCCcccchhhhHHHHHHHHHHHHHhhcccCC
Q 019892 219 VKNANISAHRGIGIFILVLSILQILAFFLRPSK 251 (334)
Q Consensus 219 ~~~~~~~~H~~lG~~~~~l~~~Q~~~g~~r~~~ 251 (334)
+ ....-=++|++++++.+...+.|++-|..
T Consensus 120 ~---pre~~W~~Gv~l~~l~~~~af~GY~Lpw~ 149 (223)
T PRK03735 120 K---PRELNWVVGVLIFFVTVGLGFTGYLLPWD 149 (223)
T ss_pred C---CCCceeHHHHHHHHHHHHHHhccccCCcc
Confidence 1 23445689999999999999999887765
No 95
>PF14358 DUF4405: Domain of unknown function (DUF4405)
Probab=44.98 E-value=58 Score=22.76 Aligned_cols=41 Identities=12% Similarity=0.198 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHhhhhhhhhhccC-------CCChhhhhhhHHHHHHHH
Q 019892 161 ALGMIGWGIILPVGAIIPRYFKH-------KDPLWYYLHAIIQLVGFI 201 (334)
Q Consensus 161 ~lm~~aw~~l~p~gil~aR~~k~-------~~~~w~~~H~~~q~~~~~ 201 (334)
.++++++.+++-.|++..+...+ .++.|..+|...-...++
T Consensus 7 ~~l~~~~~~~~iSGi~l~~~~~~~~~~~~~~~~~~~~iH~~~g~~~~~ 54 (64)
T PF14358_consen 7 LLLLVSFLVLAISGILLSFVPFPGLPFLGLNKHFWRNIHLWAGYLFLI 54 (64)
T ss_pred HHHHHHHHHHHHHHHHHhhhccccccccCCcHHHHHHHHHHHHHHHHH
Confidence 34556666666666666544322 124566666555544333
No 96
>TIGR00353 nrfE c-type cytochrome biogenesis protein CcmF. The product of this gene is required for the biogenesis of C-type cytochromes. This gene is thought to have eleven transmembrane helices. Disruption of this gene in Paracoccus denitrificans, encoding a putative transporter, results in formation of an unstable apocytochrome c and deficiency in siderophore production.
Probab=44.42 E-value=3.6e+02 Score=27.94 Aligned_cols=63 Identities=14% Similarity=0.008 Sum_probs=42.2
Q ss_pred ccchhhhhHHHHHHHHHHHHhhhhhhhhhc-cC-CCChhhhhhhHHHHHHHHHHHHHHhheeeec
Q 019892 152 SSREKKNHGALGMIGWGIILPVGAIIPRYF-KH-KDPLWYYLHAIIQLVGFIFGLATVLLGIQLY 214 (334)
Q Consensus 152 ~~~~~~~Hg~lm~~aw~~l~p~gil~aR~~-k~-~~~~w~~~H~~~q~~~~~~~i~g~~l~~~~~ 214 (334)
.+.....|.-+..++...+.-..++...++ +. ....|-+.=+....++.++..+|+++|-...
T Consensus 113 q~~~l~iH~p~~~lgya~~~v~f~~a~~~L~~~~~~~~~~~~~~~~~~~g~~flt~Gi~~G~~WA 177 (576)
T TIGR00353 113 QDPGLIFHPPLLYMGYVGFSVAFAFALASLLRGELDSACARICRPWTLAAWSFLTLGIVLGSWWA 177 (576)
T ss_pred cCCChhhhHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 566789999999998866544333333343 32 1345655556667788999999999986544
No 97
>MTH00033 CYTB cytochrome b; Provisional
Probab=44.39 E-value=1e+02 Score=30.10 Aligned_cols=84 Identities=14% Similarity=0.106 Sum_probs=53.8
Q ss_pred HHHHHHHHhheeeecccccc----------C----CCCcccchhhhHHHHHHHHHHHHHhhcccCCCCCCcccccchhHH
Q 019892 200 FIFGLATVLLGIQLYNKLNV----------K----NANISAHRGIGIFILVLSILQILAFFLRPSKDSKFRRFWNWYHHW 265 (334)
Q Consensus 200 ~~~~i~g~~l~~~~~~~~~~----------~----~~~~~~H~~lG~~~~~l~~~Q~~~g~~r~~~~~~~r~~~~~~H~~ 265 (334)
++-.+.|+.+++.+..+... + .-....|..=.-..++++.+...-|++...-+ | ..=|.
T Consensus 39 ~~qiiTGi~La~~Y~p~~~~Af~Sv~~i~~~v~~Gw~iR~~H~~gAs~~f~~~ylHi~R~~~~gsY~---r----~~~W~ 111 (383)
T MTH00033 39 GIQILTGVLLAMHYRSDVSLAFSSVAHIVRDVNYGWILRYVHANGASLFFICVYCHIGRGLYYGGYS---R----VLTWI 111 (383)
T ss_pred HHHHHHHHHHHhhhcCCCcchHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccc---C----hHHHH
Confidence 34456788888876543211 0 11345676666666666777776676542211 2 22477
Q ss_pred HHHHHHHHHHHHHHHhhhhccCCCc
Q 019892 266 FGRLALFFASVNIVLGIQIGYAGNE 290 (334)
Q Consensus 266 ~G~~~~~lg~~~i~~G~~~~~~~~~ 290 (334)
.|.+++++.+++.++|..+.-++.+
T Consensus 112 ~Gv~ll~l~m~~aF~GYvLpw~qms 136 (383)
T MTH00033 112 VGVLIFFIMMLTAFIGYVLPWGQMS 136 (383)
T ss_pred HhHHHHHHHHHHHHhhhcccccchh
Confidence 9999999999999999998766544
No 98
>COG3790 Predicted membrane protein [Function unknown]
Probab=44.14 E-value=62 Score=24.70 Aligned_cols=30 Identities=13% Similarity=0.174 Sum_probs=24.0
Q ss_pred CCcccchhhhHHHHHHHHHHHHHhh-cccCC
Q 019892 222 ANISAHRGIGIFILVLSILQILAFF-LRPSK 251 (334)
Q Consensus 222 ~~~~~H~~lG~~~~~l~~~Q~~~g~-~r~~~ 251 (334)
...++-.++|+.++...+.-++.|+ +||..
T Consensus 42 ~~~s~~a~~~llmiWavca~~IhGVGFrpr~ 72 (97)
T COG3790 42 RTSSLEAWHGLLMIWAVCAGVIHGVGFRPRS 72 (97)
T ss_pred HhcCchHHHHHHHHHHHHHHHHhcccCchHH
Confidence 4668888999999999998888887 56643
No 99
>PRK11281 hypothetical protein; Provisional
Probab=43.26 E-value=1.7e+02 Score=32.83 Aligned_cols=12 Identities=17% Similarity=0.515 Sum_probs=6.6
Q ss_pred hhhhHHHHHHHH
Q 019892 228 RGIGIFILVLSI 239 (334)
Q Consensus 228 ~~lG~~~~~l~~ 239 (334)
-.+|-+++++.+
T Consensus 650 d~lg~~~~i~~~ 661 (1113)
T PRK11281 650 DVIGQAVIIIAL 661 (1113)
T ss_pred hhHHHHHHHHHH
Confidence 466666665433
No 100
>CHL00070 petB cytochrome b6
Probab=43.20 E-value=65 Score=28.81 Aligned_cols=92 Identities=11% Similarity=0.108 Sum_probs=54.1
Q ss_pred hhhhHHHHHHHHHHHHhhhhhhhhhccCC---------------CChh--hhhhhHHHHHHHHHHHHHHhheeeeccccc
Q 019892 156 KKNHGALGMIGWGIILPVGAIIPRYFKHK---------------DPLW--YYLHAIIQLVGFIFGLATVLLGIQLYNKLN 218 (334)
Q Consensus 156 ~~~Hg~lm~~aw~~l~p~gil~aR~~k~~---------------~~~w--~~~H~~~q~~~~~~~i~g~~l~~~~~~~~~ 218 (334)
...=|.+..+++.+.+-.|++.+=|+.+. .--| ..+|..--.+-++++.+=+.=++. .+..+
T Consensus 33 ~~~~G~ll~~~~~iqiiTGi~L~~~Y~p~~~~Af~Sv~~I~~ev~~Gwl~R~~H~~gas~~~~~~~lH~~r~~~-~gsYk 111 (215)
T CHL00070 33 FYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFRVYL-TGGFK 111 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hhhhc
Confidence 34458888899999999999998766642 1123 245543222111111111111111 12222
Q ss_pred cCCCCcccchhhhHHHHHHHHHHHHHhhcccCC
Q 019892 219 VKNANISAHRGIGIFILVLSILQILAFFLRPSK 251 (334)
Q Consensus 219 ~~~~~~~~H~~lG~~~~~l~~~Q~~~g~~r~~~ 251 (334)
+ ....-=++|++++++.....+.|++-|..
T Consensus 112 ~---pre~~W~~Gv~l~~l~m~~af~GY~Lpw~ 141 (215)
T CHL00070 112 K---PRELTWVTGVVLAVLTVSFGVTGYSLPWD 141 (215)
T ss_pred C---CcccCcHHHHHHHHHHHHHHHccccCCcc
Confidence 1 23445689999999999999999988765
No 101
>COG4657 RnfA Predicted NADH:ubiquinone oxidoreductase, subunit RnfA [Energy production and conversion]
Probab=43.19 E-value=69 Score=27.33 Aligned_cols=99 Identities=17% Similarity=0.305 Sum_probs=60.1
Q ss_pred ccchhhhHHHHHHHHHHHHHhhcccCCCCCCcccccchhHHHHHHHHHHHHHHHHHhhhhccCCCc--c--hhhHHHHHH
Q 019892 225 SAHRGIGIFILVLSILQILAFFLRPSKDSKFRRFWNWYHHWFGRLALFFASVNIVLGIQIGYAGNE--W--KIGYGFLLA 300 (334)
Q Consensus 225 ~~H~~lG~~~~~l~~~Q~~~g~~r~~~~~~~r~~~~~~H~~~G~~~~~lg~~~i~~G~~~~~~~~~--~--~~~y~~~~~ 300 (334)
..-+.+.+++++....|..--+.|.... .+-+.+|..+-++-.=-..+|..+.+.... . .+.||.-.+
T Consensus 70 ~yLRtiafIlVIAv~VQf~Em~v~KtsP--------~LYr~LGIfLPLITTNCaVLgvaLln~~~~~~f~qsv~~gf~a~ 141 (193)
T COG4657 70 EYLRTIAFILVIAVVVQFTEMVVRKTSP--------TLYRLLGIFLPLITTNCAVLGVALLNINEGHNFLQSVVYGFGAA 141 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccCH--------HHHHHHHHhhhhHhhchHHHHHHHHHhhhhhhHHHHHHHHhhhH
Confidence 3456888999999999998777663221 234467776655544444567666543221 1 145654444
Q ss_pred HHHHHHHHHHHHHHhhhCCCCCCCCCCcccCCC
Q 019892 301 VVLLAVIVLETLSWMKKRSDKTTAPPTFQMNPV 333 (334)
Q Consensus 301 ~~~~~~~~le~~~~~~~r~~~~~~~~~~~~~~~ 333 (334)
+-+...++ .....|.|-+--+.++.||..|.
T Consensus 142 lGfslvmv--lfA~iRER~~~advP~~frG~~i 172 (193)
T COG4657 142 LGFSLVMV--LFAAIRERLALADVPAPFRGAAI 172 (193)
T ss_pred hhHHHHHH--HHHHHHHHHHHhcCCCCCCCcch
Confidence 43333222 46677888666677889998773
No 102
>PF15176 LRR19-TM: Leucine-rich repeat family 19 TM domain
Probab=42.62 E-value=67 Score=25.05 Aligned_cols=40 Identities=18% Similarity=0.394 Sum_probs=21.9
Q ss_pred CCcchhhHHHHHHHHHH---HHHHHHHHHHhhhC--CCCCCCCCC
Q 019892 288 GNEWKIGYGFLLAVVLL---AVIVLETLSWMKKR--SDKTTAPPT 327 (334)
Q Consensus 288 ~~~~~~~y~~~~~~~~~---~~~~le~~~~~~~r--~~~~~~~~~ 327 (334)
++.|..+-|++++.+++ ++++..-..|++-| =+++++.|+
T Consensus 14 g~sW~~LVGVv~~al~~SlLIalaaKC~~~~k~~~SY~H~rL~e~ 58 (102)
T PF15176_consen 14 GRSWPFLVGVVVTALVTSLLIALAAKCPVWYKYLASYRHHRLPET 58 (102)
T ss_pred CcccHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHhccccccCCcc
Confidence 56788777766655543 33333333466654 345665554
No 103
>PF02628 COX15-CtaA: Cytochrome oxidase assembly protein; InterPro: IPR003780 This entry represents 2 activities required for heme biosynthesis: Protoheme IX farnesyltransferase converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group. Heme A synthase catalyzes the oxidation of the C8 methyl side group on heme O porphyrin ring into a formyl group. The entry contains CtaA, which is required for cytochrome aa3 biosynthesis and sporulation in Bacillus subtilis [] and in Saccharomyces cerevisiae (Baker's yeast) the COX15 protein is required for cytochrome c oxidase assembly.; GO: 0016627 oxidoreductase activity, acting on the CH-CH group of donors, 0006461 protein complex assembly, 0055114 oxidation-reduction process, 0016020 membrane
Probab=42.31 E-value=1.4e+02 Score=27.80 Aligned_cols=90 Identities=14% Similarity=-0.013 Sum_probs=57.1
Q ss_pred hhhhhhhHHHHHHHHHHHHHHhheeeeccccccCCCCcccchhhhHHHHHHHHHHHHHhhcccCCCCCCcccccchhHHH
Q 019892 187 LWYYLHAIIQLVGFIFGLATVLLGIQLYNKLNVKNANISAHRGIGIFILVLSILQILAFFLRPSKDSKFRRFWNWYHHWF 266 (334)
Q Consensus 187 ~w~~~H~~~q~~~~~~~i~g~~l~~~~~~~~~~~~~~~~~H~~lG~~~~~l~~~Q~~~g~~r~~~~~~~r~~~~~~H~~~ 266 (334)
.+-+.|+.+-.+.-++.++.++..+...+. .+.=.+.....++++.+|.++|...-...- ..+..--.|-.+
T Consensus 66 ~~E~~HR~~~~~~gl~~l~~~~~~~~~~~~-------~~~~~~~~~~~~~l~~~Q~~lG~~~V~~~l-~~~~~~~~Hl~~ 137 (302)
T PF02628_consen 66 WIEWGHRLLAGLVGLLILALAVWAWRKRRI-------RRRLRWLALLALVLVILQGLLGAWTVLSGL-VSPYVVTLHLLL 137 (302)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhccc-------CcchHHHHHHHHHHHHHHHHHHHHHHHhcc-cchHHHHHHHHH
Confidence 456889987766555555555554432222 122337777788889999998865432221 135556789999
Q ss_pred HHHHHHHHHHHHHHhhhh
Q 019892 267 GRLALFFASVNIVLGIQI 284 (334)
Q Consensus 267 G~~~~~lg~~~i~~G~~~ 284 (334)
+.+++.+-......-...
T Consensus 138 a~~~~~~l~~~~~~~~~~ 155 (302)
T PF02628_consen 138 ALLIFALLVWLALRARRP 155 (302)
T ss_pred HHHHHHHHHHHHHHhcCc
Confidence 998888877776665444
No 104
>PF05568 ASFV_J13L: African swine fever virus J13L protein; InterPro: IPR008385 This family consists of several African swine fever virus (ASFV) j13L proteins [, , ].
Probab=42.27 E-value=23 Score=29.51 Aligned_cols=29 Identities=28% Similarity=0.498 Sum_probs=14.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhCCCCC
Q 019892 294 GYGFLLAVVLLAVIVLETLSWMKKRSDKT 322 (334)
Q Consensus 294 ~y~~~~~~~~~~~~~le~~~~~~~r~~~~ 322 (334)
.|.+++++.+.+.++.-.+.|-.+|++|+
T Consensus 31 m~tILiaIvVliiiiivli~lcssRKkKa 59 (189)
T PF05568_consen 31 MYTILIAIVVLIIIIIVLIYLCSSRKKKA 59 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 34454544443333332345666666664
No 105
>PF02508 Rnf-Nqr: Rnf-Nqr subunit, membrane protein; InterPro: IPR003667 The rnf genes of Rhodobacter capsulatus, essential for nitrogen fixation, are thought to encode a system for electron transport to nitrogenase. The rnfABCDGEH operon comprises seven genes that show similarities in gene arrangement and deduced protein sequences to homologous regions in the genomes of Haemophilus influenzae and Escherichia coli. Four of the rnf gene products were found to be similar in sequence to components of an Na+-dependent NADH:ubiquinone oxidoreductase (NQR) from Vibrio alginolyticus []. The NQR-type enzyme of Klebsiella pneumoniae was shown to catalyse sodium-dependent NADH oxidation in the respiratory chain [].; GO: 0016020 membrane
Probab=41.85 E-value=2.4e+02 Score=24.64 Aligned_cols=23 Identities=4% Similarity=0.101 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHhhhhhhhhhcc
Q 019892 160 GALGMIGWGIILPVGAIIPRYFK 182 (334)
Q Consensus 160 g~lm~~aw~~l~p~gil~aR~~k 182 (334)
+.-|.+|..+.+-.+..+....+
T Consensus 38 a~~mGlav~~V~~~s~~~~~~l~ 60 (190)
T PF02508_consen 38 ALGMGLAVTFVLTLSSVLISLLR 60 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33355555444444444443333
No 106
>PF12811 BaxI_1: Bax inhibitor 1 like ; InterPro: IPR010539 Bax inhibitor-1 (BI1) family contains six known genes in human. Some members of BI1 family have been proved to play important roles in cell death [, ].
Probab=41.76 E-value=1.7e+02 Score=27.21 Aligned_cols=54 Identities=24% Similarity=0.351 Sum_probs=33.4
Q ss_pred chhHHHHHHHHHHHHHHHHHhhhhcc------CCC--cchhhHHHHHHHHHHHHHHHHHHHHhhh
Q 019892 261 WYHHWFGRLALFFASVNIVLGIQIGY------AGN--EWKIGYGFLLAVVLLAVIVLETLSWMKK 317 (334)
Q Consensus 261 ~~H~~~G~~~~~lg~~~i~~G~~~~~------~~~--~~~~~y~~~~~~~~~~~~~le~~~~~~~ 317 (334)
++=..++.+++++|..|..+=++..+ .|+ +|..++++ ..-++++++|+++=..+
T Consensus 209 plgI~~slv~v~iAa~sLllDFd~Ie~~v~~gaPk~~eW~~AfGL---~vTLVWLYlEILRLL~~ 270 (274)
T PF12811_consen 209 PLGIGFSLVVVGIAALSLLLDFDFIEQGVRQGAPKKMEWYAAFGL---LVTLVWLYLEILRLLSK 270 (274)
T ss_pred hHHHHHHHHHHHHHHHHHHhhHHHHHHHHHcCCChhhHHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 45556666666667777776665543 232 35555554 44588999998875543
No 107
>PRK15006 thiosulfate reductase cytochrome B subunit; Provisional
Probab=41.67 E-value=2e+02 Score=26.41 Aligned_cols=94 Identities=11% Similarity=0.041 Sum_probs=51.4
Q ss_pred hhhHHHHHHHHHHHHHHhheeeeccccccCCCCcccchhhhHHHHHHHHHHHHHhhc----ccC---C------------
Q 019892 191 LHAIIQLVGFIFGLATVLLGIQLYNKLNVKNANISAHRGIGIFILVLSILQILAFFL----RPS---K------------ 251 (334)
Q Consensus 191 ~H~~~q~~~~~~~i~g~~l~~~~~~~~~~~~~~~~~H~~lG~~~~~l~~~Q~~~g~~----r~~---~------------ 251 (334)
.|+..-+.-+++.+.|+.+.+-..+ ..........|.+.|++.++..++-.+..++ |+. .
T Consensus 76 ~HW~~A~~fl~L~lTGl~i~~p~~~-~~~~~~~~~iH~~~G~vf~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (261)
T PRK15006 76 WHWSNALLFVLLLLSGLINHFALVG-ATAVKSLVAVHEVCGFLLLACWLGFVLINAVGGNGHHYRIRRQGWLERCAKQTR 154 (261)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCccc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhccCcHHHHHHHHHHHHH
Confidence 3776666667777778777442211 0100123467999998888775555444222 110 0
Q ss_pred -------CCC-------CcccccchhHHHHHHH-HHHHHHHHHHhhhhc
Q 019892 252 -------DSK-------FRRFWNWYHHWFGRLA-LFFASVNIVLGIQIG 285 (334)
Q Consensus 252 -------~~~-------~r~~~~~~H~~~G~~~-~~lg~~~i~~G~~~~ 285 (334)
+++ ....+|...+..-.++ ++++.+.+.+|+.+.
T Consensus 155 ~yl~g~~~g~~~p~~~~~~~k~Npgqkl~y~~v~~~~~~~livTGl~l~ 203 (261)
T PRK15006 155 FYLFGIMQGEEHPFPATTQSKFNPLQQLAYLGVMYGLVPLLLLTGLLCL 203 (261)
T ss_pred HHHHHHhcCCCCCCCCccccccCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000 1114566666666654 355568899998864
No 108
>PRK05151 electron transport complex protein RsxA; Provisional
Probab=41.47 E-value=1.8e+02 Score=25.62 Aligned_cols=98 Identities=17% Similarity=0.293 Sum_probs=57.2
Q ss_pred cchhhhHHHHHHHHHHHHHhhcccCCCCCCcccccchhHHHHHHHHHHHHHHHHHhhhhccCC--Ccch--hhHHHHHHH
Q 019892 226 AHRGIGIFILVLSILQILAFFLRPSKDSKFRRFWNWYHHWFGRLALFFASVNIVLGIQIGYAG--NEWK--IGYGFLLAV 301 (334)
Q Consensus 226 ~H~~lG~~~~~l~~~Q~~~g~~r~~~~~~~r~~~~~~H~~~G~~~~~lg~~~i~~G~~~~~~~--~~~~--~~y~~~~~~ 301 (334)
..+.+-+++.+..+.|.+--+++... ...++.+|..+-++..=.+.+|..+.... ..+. +.+++-.++
T Consensus 71 ~lr~~~fIlvIA~~V~~ve~~l~~~~--------p~Ly~~LGiflpLI~tNCaVLG~al~~~~~~~~~~~s~~~glg~Gl 142 (193)
T PRK05151 71 YLRTLAFILVIAVVVQFTEMVVRKTS--------PTLYRLLGIFLPLITTNCAVLGVALLNINLGHNFLQSALYGFGAAV 142 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh--------HHHHHHHhhhhhHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Confidence 35677777777788888766665222 23566777776666655566787665532 2222 344443333
Q ss_pred HHHHHHHHHHHHHhhhCCCCCCCCCCcccCCC
Q 019892 302 VLLAVIVLETLSWMKKRSDKTTAPPTFQMNPV 333 (334)
Q Consensus 302 ~~~~~~~le~~~~~~~r~~~~~~~~~~~~~~~ 333 (334)
-+...+. ..+-.|+|=+..+-++.||.-|.
T Consensus 143 Gf~lal~--lla~iRErl~~~~vP~~~~G~pI 172 (193)
T PRK05151 143 GFSLVLV--LFAAIRERLAVADVPAPFRGAAI 172 (193)
T ss_pred HHHHHHH--HHHHHHHHHcCCCCCcccCCccH
Confidence 3332222 34556666444566999999883
No 109
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=41.44 E-value=1.7e+02 Score=32.87 Aligned_cols=15 Identities=13% Similarity=0.222 Sum_probs=8.6
Q ss_pred hhhhHHHHHHHHHHH
Q 019892 228 RGIGIFILVLSILQI 242 (334)
Q Consensus 228 ~~lG~~~~~l~~~Q~ 242 (334)
..+|-+++++.++-.
T Consensus 629 ~~lgr~~~i~~~~~l 643 (1109)
T PRK10929 629 GTLGRLCFILLCGAL 643 (1109)
T ss_pred ccHHHHHHHHHHHHH
Confidence 367766666555433
No 110
>PF02322 Cyto_ox_2: Cytochrome oxidase subunit II; InterPro: IPR003317 These proteins are cytochrome bd type terminal oxidases that catalyse quinol dependent, Na+ independent oxygen uptake []. Members of this family are integral membrane proteins and contain a protoheame IX centre B558. Cytochrome bd may play an important role in microaerobic nitrogen fixation in the enteric bacterium Klebsiella pneumoniae, where it is expressed under all conditions that permit diazotrophy []. ; GO: 0055114 oxidation-reduction process, 0016020 membrane
Probab=40.96 E-value=3.2e+02 Score=25.93 Aligned_cols=54 Identities=19% Similarity=0.106 Sum_probs=30.3
Q ss_pred ccchhhhHHHHHHHHHHHHHhhcccCCCCCCcccccchhHHHHHHHHHHHHHHH
Q 019892 225 SAHRGIGIFILVLSILQILAFFLRPSKDSKFRRFWNWYHHWFGRLALFFASVNI 278 (334)
Q Consensus 225 ~~H~~lG~~~~~l~~~Q~~~g~~r~~~~~~~r~~~~~~H~~~G~~~~~lg~~~i 278 (334)
++.++++-+..+..+.+.-.-++.-+.++..|...+...+..+....++..+..
T Consensus 157 ~pf~ll~Gl~~v~~~~~~GA~~l~~kt~g~l~~rar~~a~~~~~~~~~~~~~~~ 210 (328)
T PF02322_consen 157 SPFSLLGGLAVVALFALHGAVFLALKTEGELRERARRWALRLGLAALVLFLAFA 210 (328)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666555555444554444444455555566666666666555544
No 111
>PRK15097 cytochrome d terminal oxidase subunit 1; Provisional
Probab=40.79 E-value=4.1e+02 Score=27.11 Aligned_cols=158 Identities=9% Similarity=-0.006 Sum_probs=78.1
Q ss_pred hhhHHHHHHHHHHHHhhhhhhhhhccCCCChhhhhhhHHHHHHHHHHHHHHhheeeeccccccCCCCcccchhhhHHHHH
Q 019892 157 KNHGALGMIGWGIILPVGAIIPRYFKHKDPLWYYLHAIIQLVGFIFGLATVLLGIQLYNKLNVKNANISAHRGIGIFILV 236 (334)
Q Consensus 157 ~~Hg~lm~~aw~~l~p~gil~aR~~k~~~~~w~~~H~~~q~~~~~~~i~g~~l~~~~~~~~~~~~~~~~~H~~lG~~~~~ 236 (334)
..|-++-.++-++-+=++++=.+|.|..++.|.++=+...-+-.+...+|++.|+...=+.+. +....-...|=+.-.
T Consensus 17 ~fH~lFvpltiGL~~llai~E~~~~rtg~~~y~~larFW~Klf~InFavGVvTGivmeFqFG~--nWs~ys~~vGdifG~ 94 (522)
T PRK15097 17 MYHFLFVPLTLGMAFLLAIMETVYVLSGKQIYKDMTKFWGKLFGINFALGVATGLTMEFQFGT--NWSYYSHYVGDIFGA 94 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhhcchheeeccc--ccHHHHHHHHHHHhh
Confidence 456655555555555556666688888888887766655544333344566665543212111 122333344444433
Q ss_pred HHHHHHH---------HhhcccCCCCCCcccccchhHHHHHHHHHHHHHHHH------------Hhhhhcc-CCC-----
Q 019892 237 LSILQIL---------AFFLRPSKDSKFRRFWNWYHHWFGRLALFFASVNIV------------LGIQIGY-AGN----- 289 (334)
Q Consensus 237 l~~~Q~~---------~g~~r~~~~~~~r~~~~~~H~~~G~~~~~lg~~~i~------------~G~~~~~-~~~----- 289 (334)
.+.++.+ +|++.=. ++++-+..|....+.+.+-+....+ .|+++.. +++
T Consensus 95 pLa~E~l~AFFlEstFlGl~~FG----W~rl~~~~H~~~~~lVaiGt~lSA~wIl~ANsWMQtP~G~~~~~~~gr~~~~d 170 (522)
T PRK15097 95 PLAIEGLMAFFLESTFVGLFFFG----WDRLGKVQHMCVTWLVALGSNLSALWILVANGWMQNPIASDFNFETMRMEMVS 170 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh----hhhcchHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCceEEecCCCeEEeCC
Confidence 3333333 3432211 1123356887776655444333322 3422210 111
Q ss_pred c----------chhhHHHHHHHHHHHHHHHHHHHHhhhCCC
Q 019892 290 E----------WKIGYGFLLAVVLLAVIVLETLSWMKKRSD 320 (334)
Q Consensus 290 ~----------~~~~y~~~~~~~~~~~~~le~~~~~~~r~~ 320 (334)
. +...-.+..+.+...++++.+..|.-.|++
T Consensus 171 ~~a~~~NP~~~~~f~H~~~aa~~tg~f~v~gvsA~~llr~r 211 (522)
T PRK15097 171 FSELVLNPVAQVKFVHTVASGYVTGAMFILGISAYYMLKGR 211 (522)
T ss_pred HHHHHcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 0 112334555666777777777888776654
No 112
>PRK05419 putative sulfite oxidase subunit YedZ; Reviewed
Probab=40.43 E-value=1.5e+02 Score=26.14 Aligned_cols=54 Identities=17% Similarity=0.268 Sum_probs=38.2
Q ss_pred CcccchhhhHHHHHHHHHHHHHhhcccCCCCCCcccccchhHHHHHHHHHHHHHHHH
Q 019892 223 NISAHRGIGIFILVLSILQILAFFLRPSKDSKFRRFWNWYHHWFGRLALFFASVNIV 279 (334)
Q Consensus 223 ~~~~H~~lG~~~~~l~~~Q~~~g~~r~~~~~~~r~~~~~~H~~~G~~~~~lg~~~i~ 279 (334)
....-...|...+.+++++.+.+-++...+ .......|+.+|..+++++..=..
T Consensus 40 ~~~~~~~tG~~Al~llll~l~l~pL~~l~~---~~~l~~~RR~LGl~af~~a~lH~~ 93 (205)
T PRK05419 40 VKDIEHFTGLWALVFLLATLAVTPLRRLTG---QPLLIRTRRLLGLWAFFYATLHLL 93 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcC---CcHHHHHHHHHHHHHHHHHHHHHH
Confidence 445567889999999888888775542211 123456899999999998877663
No 113
>PF10966 DUF2768: Protein of unknown function (DUF2768); InterPro: IPR020076 This entry contains proteins with no known function.
Probab=40.36 E-value=1.1e+02 Score=21.30 Aligned_cols=45 Identities=27% Similarity=0.426 Sum_probs=26.7
Q ss_pred HHHHHHHHHHhhhhhhhhh-ccCCCChhhhhhhHHHHHHHHHHHHHHhhee
Q 019892 162 LGMIGWGIILPVGAIIPRY-FKHKDPLWYYLHAIIQLVGFIFGLATVLLGI 211 (334)
Q Consensus 162 lm~~aw~~l~p~gil~aR~-~k~~~~~w~~~H~~~q~~~~~~~i~g~~l~~ 211 (334)
+-.++++++.-.-+..+|+ .|+ .|+ -..+-.+|++|.++|..+.+
T Consensus 6 ~~~iglMfisv~~i~~sR~Klk~---~~l--k~i~~~vAy~lli~~gli~~ 51 (58)
T PF10966_consen 6 FGAIGLMFISVILIYFSRYKLKG---KFL--KFIVSLVAYILLIVSGLIMF 51 (58)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhC---hHH--HHHHHHHHHHHHHHHHHheE
Confidence 3455666666677778886 222 233 34566678777777554443
No 114
>MTH00131 CYTB cytochrome b; Provisional
Probab=40.35 E-value=1e+02 Score=30.01 Aligned_cols=84 Identities=13% Similarity=0.103 Sum_probs=54.6
Q ss_pred HHHHHHHHhheeeecccccc----------C----CCCcccchhhhHHHHHHHHHHHHHhhcccCCCCCCcccccchhHH
Q 019892 200 FIFGLATVLLGIQLYNKLNV----------K----NANISAHRGIGIFILVLSILQILAFFLRPSKDSKFRRFWNWYHHW 265 (334)
Q Consensus 200 ~~~~i~g~~l~~~~~~~~~~----------~----~~~~~~H~~lG~~~~~l~~~Q~~~g~~r~~~~~~~r~~~~~~H~~ 265 (334)
++-.+.|+.+++.+..+... + ....+.|..=.-..++++.+...-+++...-+.+ | =|+
T Consensus 42 ~~qiitG~~L~~~Y~p~~~~a~~Sv~~i~~ev~~G~~iR~~H~~gas~~~~~~~lH~~r~~~~gsy~~~-~------~W~ 114 (380)
T MTH00131 42 ITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNLHANGASFFFICIYLHIGRGLYYGSYLYK-E------TWN 114 (380)
T ss_pred HHHHHHHHHHHHHHhCCchhHHHHHHHHHccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc-h------HHH
Confidence 33466789888876543110 1 1235678876666777777777766553211111 1 378
Q ss_pred HHHHHHHHHHHHHHHhhhhccCCCc
Q 019892 266 FGRLALFFASVNIVLGIQIGYAGNE 290 (334)
Q Consensus 266 ~G~~~~~lg~~~i~~G~~~~~~~~~ 290 (334)
.|.+++++.++..++|..+.-+..+
T Consensus 115 ~G~~l~~l~~~~~f~Gy~Lpw~q~s 139 (380)
T MTH00131 115 IGVVLLLLVMMTAFVGYVLPWGQMS 139 (380)
T ss_pred HhHHHHHHHHHHHHHhccCccccch
Confidence 9999999999999999999876554
No 115
>COG2717 Predicted membrane protein [Function unknown]
Probab=39.86 E-value=36 Score=30.27 Aligned_cols=44 Identities=18% Similarity=0.393 Sum_probs=34.0
Q ss_pred cchhhhhHHHHHHHHHHHHhhhhhhhhhccC-CCChhhhhhhHHH
Q 019892 153 SREKKNHGALGMIGWGIILPVGAIIPRYFKH-KDPLWYYLHAIIQ 196 (334)
Q Consensus 153 ~~~~~~Hg~lm~~aw~~l~p~gil~aR~~k~-~~~~w~~~H~~~q 196 (334)
+.....=..+-++||.+++|.++-+.+..+. -.+.|.++|...=
T Consensus 110 d~~~rpyitiG~iaflll~pLalTS~k~~~rrlG~rW~~LHrLvY 154 (209)
T COG2717 110 DLLKRPYITIGMIAFLLLIPLALTSFKWVRRRLGKRWKKLHRLVY 154 (209)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 4445556778899999999999999887654 2468999998754
No 116
>PRK15035 cytochrome bd-II oxidase subunit 1; Provisional
Probab=39.46 E-value=4.3e+02 Score=26.94 Aligned_cols=159 Identities=12% Similarity=0.069 Sum_probs=78.5
Q ss_pred hhhHHHHHHHHHHHHhhhhhhhhhccCCCChhhhhhhHHHHHHHHHHHHHHhheeeeccccccCCCCcccchhhhHHHHH
Q 019892 157 KNHGALGMIGWGIILPVGAIIPRYFKHKDPLWYYLHAIIQLVGFIFGLATVLLGIQLYNKLNVKNANISAHRGIGIFILV 236 (334)
Q Consensus 157 ~~Hg~lm~~aw~~l~p~gil~aR~~k~~~~~w~~~H~~~q~~~~~~~i~g~~l~~~~~~~~~~~~~~~~~H~~lG~~~~~ 236 (334)
..|-++-.+.-++-+=++++=.+|.|..++.|.++=+...=+-.+...+|++.|+...=+.+. +....-..+|=+.-.
T Consensus 17 ~fH~lFvpltiGL~~~lai~E~~~~rtg~~~y~~larFw~Klf~InFavGVvTGivmeFqFG~--nWs~ys~~vGdvfG~ 94 (514)
T PRK15035 17 LYHFLFVPLTLGLIFLLAIMETIYVVTGKTIYRDMTRFWGKLFGINFALGVATGLTMEFQFGT--NWSFYSNYVGDIFGA 94 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhhc--chHHHHHHHHHHhhH
Confidence 467666666666655566667788888888776665554433333333456565543212111 122333344444443
Q ss_pred HHHHHHH---------HhhcccCCCCCCcccccchhHHHHHHHHHHHHHHHH------------Hhhhhc-cCCC----c
Q 019892 237 LSILQIL---------AFFLRPSKDSKFRRFWNWYHHWFGRLALFFASVNIV------------LGIQIG-YAGN----E 290 (334)
Q Consensus 237 l~~~Q~~---------~g~~r~~~~~~~r~~~~~~H~~~G~~~~~lg~~~i~------------~G~~~~-~~~~----~ 290 (334)
.+.++.+ +|++.=. +++.-+..|....+.+-+-+....+ .|+.+. .+++ .
T Consensus 95 pLa~E~l~AFFlEstFlGl~lFG----w~rl~~~~H~~~~~lVaiGt~lSA~wIl~ANsWMQtP~G~~~~~~~gr~~~~d 170 (514)
T PRK15035 95 PLAMEALMAFFLESTFVGLFFFG----WQRLNKYQHLLVTWLVAFGSNLSALWILNANGWMQYPTGAHFDIDTLRMEMTS 170 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh----hhhcchHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCeeEEecCCCeEEeCc
Confidence 3344433 3432111 1122346787665544433222222 232221 0111 0
Q ss_pred -----------chhhHHHHHHHHHHHHHHHHHHHHhhhCCCC
Q 019892 291 -----------WKIGYGFLLAVVLLAVIVLETLSWMKKRSDK 321 (334)
Q Consensus 291 -----------~~~~y~~~~~~~~~~~~~le~~~~~~~r~~~ 321 (334)
+...-.+..+++...++++.+..|.-.|++.
T Consensus 171 ~~avi~NP~~~~~f~H~~~aa~~tg~~~v~gvsA~~lLr~r~ 212 (514)
T PRK15035 171 FSELVFNPVSQVKFVHTVMAGYVTGAMFIMAISAWYLLRGRE 212 (514)
T ss_pred HHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 1123345666777777888888887776554
No 117
>TIGR01943 rnfA electron transport complex, RnfABCDGE type, A subunit. The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the A subunit.
Probab=39.38 E-value=2.6e+02 Score=24.47 Aligned_cols=97 Identities=16% Similarity=0.272 Sum_probs=56.4
Q ss_pred chhhhHHHHHHHHHHHHHhhcccCCCCCCcccccchhHHHHHHHHHHHHHHHHHhhhhccC--CCcch--hhHHHHHHHH
Q 019892 227 HRGIGIFILVLSILQILAFFLRPSKDSKFRRFWNWYHHWFGRLALFFASVNIVLGIQIGYA--GNEWK--IGYGFLLAVV 302 (334)
Q Consensus 227 H~~lG~~~~~l~~~Q~~~g~~r~~~~~~~r~~~~~~H~~~G~~~~~lg~~~i~~G~~~~~~--~~~~~--~~y~~~~~~~ 302 (334)
.+.+-+++.+..+.|.+--+++... ...|+-+|..+-++..=.+.+|..+... +..+. ..+++-.++-
T Consensus 71 lr~~~filvIA~~V~~ve~~l~~~~--------p~ly~~LGiflpLI~tNCaVLG~a~~~~~~~~~~~~s~~~glg~GlG 142 (190)
T TIGR01943 71 LRTIVFILVIAALVQFVEMVVRKTS--------PDLYRALGIFLPLITTNCAVLGVALLNIQLDYNLLQSIVYAVGAGLG 142 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhC--------hHHHHHHhhhhhHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHH
Confidence 5667777777778888766664222 1356667877766666666678666542 22332 3444433333
Q ss_pred HHHHHHHHHHHHhhhCCCCCCCCCCcccCCC
Q 019892 303 LLAVIVLETLSWMKKRSDKTTAPPTFQMNPV 333 (334)
Q Consensus 303 ~~~~~~le~~~~~~~r~~~~~~~~~~~~~~~ 333 (334)
+...+. ...-.|+|=+..+-++.||..|.
T Consensus 143 f~lal~--l~a~iRE~l~~~~vP~~~~G~pI 171 (190)
T TIGR01943 143 FTLAMV--IFAGIRERLDLSDVPKAFRGSPI 171 (190)
T ss_pred HHHHHH--HHHHHHHHHccCCCCccccCcCH
Confidence 322222 34555666445566999999884
No 118
>COG4146 Predicted symporter [General function prediction only]
Probab=39.35 E-value=81 Score=30.84 Aligned_cols=49 Identities=14% Similarity=0.270 Sum_probs=29.2
Q ss_pred HHHHHHHhhcccCCCC-----C-CcccccchhHHHHHHHHHHHHHHHHHhhhhcc
Q 019892 238 SILQILAFFLRPSKDS-----K-FRRFWNWYHHWFGRLALFFASVNIVLGIQIGY 286 (334)
Q Consensus 238 ~~~Q~~~g~~r~~~~~-----~-~r~~~~~~H~~~G~~~~~lg~~~i~~G~~~~~ 286 (334)
+....+.|+++|...+ + .--.-+|-|.=.-.+-++++.+.+.+|+...+
T Consensus 472 VvVMLviGflKpr~t~f~~~~a~~VDltpWk~ak~~sa~ill~migvylGlAe~~ 526 (571)
T COG4146 472 VVVMLVIGFLKPRATPFTFKDAFAVDLTPWKNAKIASAGILLAMIGVYLGLAEFG 526 (571)
T ss_pred hHHHHhhhcccCCCCccccCccccccCcccccchhhHHHHHHHHHHHHhhhhhcC
Confidence 3445567888776421 1 11122344555566777888888888887654
No 119
>MTH00034 CYTB cytochrome b; Validated
Probab=38.99 E-value=1.3e+02 Score=29.34 Aligned_cols=84 Identities=8% Similarity=0.073 Sum_probs=55.0
Q ss_pred HHHHHHHHhheeeecccccc----------C----CCCcccchhhhHHHHHHHHHHHHHhhcccCCCCCCcccccchhHH
Q 019892 200 FIFGLATVLLGIQLYNKLNV----------K----NANISAHRGIGIFILVLSILQILAFFLRPSKDSKFRRFWNWYHHW 265 (334)
Q Consensus 200 ~~~~i~g~~l~~~~~~~~~~----------~----~~~~~~H~~lG~~~~~l~~~Q~~~g~~r~~~~~~~r~~~~~~H~~ 265 (334)
++..+.|+.+++.+..+... + .-..+.|.+-.-..++++.+..+-+++...-+ |+ .=|+
T Consensus 42 ~~qiiTG~~L~~~Y~p~~~~A~~Sv~~i~~~v~~Gw~iR~~H~~gas~~f~~~~lH~~r~~~~gsy~---~~----~~W~ 114 (379)
T MTH00034 42 IIQIITGIFLAMHYTADISLAFSSVSHICRDVNYGWLLRNIHANGASLFFICLYFHIGRGLYYGSYV---NI----ETWN 114 (379)
T ss_pred HHHHHHHHHHHHHHcCCccchHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC---Cc----hHHH
Confidence 44466799998876543211 0 12356788766666677777777676542211 11 1277
Q ss_pred HHHHHHHHHHHHHHHhhhhccCCCc
Q 019892 266 FGRLALFFASVNIVLGIQIGYAGNE 290 (334)
Q Consensus 266 ~G~~~~~lg~~~i~~G~~~~~~~~~ 290 (334)
.|.+++++.++..++|..+.-+..+
T Consensus 115 ~G~~l~~l~~~~af~Gy~Lpw~q~s 139 (379)
T MTH00034 115 IGVILFLLTMLTAFVGYVLPWGQMS 139 (379)
T ss_pred HhHHHHHHHHHHHHhhcCcchhhhh
Confidence 9999999999999999999866544
No 120
>PRK10369 heme lyase subunit NrfE; Provisional
Probab=38.94 E-value=4.6e+02 Score=27.13 Aligned_cols=63 Identities=16% Similarity=0.164 Sum_probs=41.6
Q ss_pred ccchhhhhHHHHHHHHH-HHHhhhhhhhhhccC-CCChhhhhhhHHHHHHHHHHHHHHhheeeec
Q 019892 152 SSREKKNHGALGMIGWG-IILPVGAIIPRYFKH-KDPLWYYLHAIIQLVGFIFGLATVLLGIQLY 214 (334)
Q Consensus 152 ~~~~~~~Hg~lm~~aw~-~l~p~gil~aR~~k~-~~~~w~~~H~~~q~~~~~~~i~g~~l~~~~~ 214 (334)
.+.....|+.+.+++.+ +.+|.+.-++-..+. ....|-++=+-...++.++..+|+++|-...
T Consensus 167 q~~wl~iHpp~l~lgYa~~~v~fa~a~~~Ll~~~~~~~~~~~~~~~~~~gw~fLT~GI~lG~~WA 231 (571)
T PRK10369 167 QHPGLIFHPPLLYLGYGGLMVAASVALASLLRGEFDAACARICWRWALPGWSALTAGIILGSWWA 231 (571)
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56778999999999998 555666555433332 1233434444456678888889999986543
No 121
>PRK15049 L-asparagine permease; Provisional
Probab=38.93 E-value=2.7e+02 Score=27.99 Aligned_cols=22 Identities=18% Similarity=-0.017 Sum_probs=10.9
Q ss_pred cccccchhHHHHHHHHHHHHHH
Q 019892 256 RRFWNWYHHWFGRLALFFASVN 277 (334)
Q Consensus 256 r~~~~~~H~~~G~~~~~lg~~~ 277 (334)
|++..+...+..++.++.....
T Consensus 415 ~pf~~~~~p~~~~~~l~~~~~~ 436 (499)
T PRK15049 415 VSFKLPGAPFTSWLTLLFLLSV 436 (499)
T ss_pred CCCcccCccHHHHHHHHHHHHH
Confidence 3444444556665555544333
No 122
>PF09990 DUF2231: Predicted membrane protein (DUF2231); InterPro: IPR019251 This domain, found in various hypothetical bacterial proteins, has no known function.
Probab=38.64 E-value=99 Score=23.82 Aligned_cols=48 Identities=19% Similarity=0.224 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHhheeeecccc-c--cCCCCcccchhhhHHHHHHHHHHH
Q 019892 195 IQLVGFIFGLATVLLGIQLYNKL-N--VKNANISAHRGIGIFILVLSILQI 242 (334)
Q Consensus 195 ~q~~~~~~~i~g~~l~~~~~~~~-~--~~~~~~~~H~~lG~~~~~l~~~Q~ 242 (334)
+-.++.+.++.+...|+...... + .....-..|..+|..++.+..+-.
T Consensus 8 ll~~G~l~~~~A~~~G~~d~~~~~~~~~~~~~~~~H~~~~~~~~~l~~~l~ 58 (104)
T PF09990_consen 8 LLVLGLLGAIVAVLTGFVDLLTVERGPPAHRVAWLHAILGLVALGLFLLLA 58 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCcCcchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555433221 1 111234678888888887776633
No 123
>MTH00016 CYTB cytochrome b; Validated
Probab=38.02 E-value=1.4e+02 Score=29.12 Aligned_cols=84 Identities=14% Similarity=0.104 Sum_probs=55.1
Q ss_pred HHHHHHHHhheeeecccccc----------C----CCCcccchhhhHHHHHHHHHHHHHhhcccCCCCCCcccccchhHH
Q 019892 200 FIFGLATVLLGIQLYNKLNV----------K----NANISAHRGIGIFILVLSILQILAFFLRPSKDSKFRRFWNWYHHW 265 (334)
Q Consensus 200 ~~~~i~g~~l~~~~~~~~~~----------~----~~~~~~H~~lG~~~~~l~~~Q~~~g~~r~~~~~~~r~~~~~~H~~ 265 (334)
++-.+.|+.+++.+..+... + .-..+.|..-.-..++++.+...-|++...=+.+ | -|.
T Consensus 43 ~~qiitG~~L~~~Y~p~~~~Af~Sv~~i~~~v~~Gw~iR~~H~~gas~~f~~~ylHi~R~~~~gsy~~~-~------~W~ 115 (378)
T MTH00016 43 VIQILTGLFLSMHYTPHIDLAFSSVAHISRDVNYGWLLRNLHANGASFFFICLYLHIGRGIYYGSYFLM-E------TWN 115 (378)
T ss_pred HHHHHHHHHHHhhhcCCcchhHHHHHHHHccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc-h------HHH
Confidence 34456799888765432110 0 1234678876666777777777777654221111 1 478
Q ss_pred HHHHHHHHHHHHHHHhhhhccCCCc
Q 019892 266 FGRLALFFASVNIVLGIQIGYAGNE 290 (334)
Q Consensus 266 ~G~~~~~lg~~~i~~G~~~~~~~~~ 290 (334)
.|.+++++.+++.++|..+.-...+
T Consensus 116 ~Gv~l~~l~m~~af~GYvLpw~q~s 140 (378)
T MTH00016 116 IGVILLLLTMATAFLGYVLPWGQMS 140 (378)
T ss_pred hhHHHHHHHHHHHHhhhccchhhhh
Confidence 9999999999999999999765543
No 124
>MTH00046 CYTB cytochrome b; Validated
Probab=37.87 E-value=1.1e+02 Score=29.55 Aligned_cols=83 Identities=14% Similarity=0.050 Sum_probs=55.9
Q ss_pred HHHHHHHhheeeeccccc--------------cCCCCcccchhhhHHHHHHHHHHHHHhhcccCCCCCCcccccchhHHH
Q 019892 201 IFGLATVLLGIQLYNKLN--------------VKNANISAHRGIGIFILVLSILQILAFFLRPSKDSKFRRFWNWYHHWF 266 (334)
Q Consensus 201 ~~~i~g~~l~~~~~~~~~--------------~~~~~~~~H~~lG~~~~~l~~~Q~~~g~~r~~~~~~~r~~~~~~H~~~ 266 (334)
+-.+.|+.+++.+..+.. ...-.+..|+.-.-..++++.+...-|++...-+ |+ .=|+.
T Consensus 34 iQiiTGi~La~~Y~p~~~~Af~Sv~~I~~~v~~GwliR~~H~~gAs~~f~~~ylHi~R~~~~gsY~---~~----~~W~~ 106 (355)
T MTH00046 34 IQVLTGVLLSLLYVADSLCSFFCVMSLSNDSFFTWCVRYWHIWGVNVLFILLFIHMGRALYYSSYS---KK----GVWNV 106 (355)
T ss_pred HHHHHHHHHHHHHcCCchHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---Cc----hhHHH
Confidence 445578888876543211 0012356788888888888888888776642211 11 13789
Q ss_pred HHHHHHHHHHHHHHhhhhccCCCc
Q 019892 267 GRLALFFASVNIVLGIQIGYAGNE 290 (334)
Q Consensus 267 G~~~~~lg~~~i~~G~~~~~~~~~ 290 (334)
|.+++++-+++.++|..+.-.+.+
T Consensus 107 Gv~l~~l~m~~aF~GYvLpwgqms 130 (355)
T MTH00046 107 GFILYLLVMVEAFLGYILPWHQMS 130 (355)
T ss_pred hHHHHHHHHHHHHeeeecCccchh
Confidence 999999999999999999766544
No 125
>MTH00145 CYTB cytochrome b; Provisional
Probab=37.73 E-value=1.6e+02 Score=28.71 Aligned_cols=84 Identities=15% Similarity=0.069 Sum_probs=53.7
Q ss_pred HHHHHHHHhheeeecccccc----------C----CCCcccchhhhHHHHHHHHHHHHHhhcccCCCCCCcccccchhHH
Q 019892 200 FIFGLATVLLGIQLYNKLNV----------K----NANISAHRGIGIFILVLSILQILAFFLRPSKDSKFRRFWNWYHHW 265 (334)
Q Consensus 200 ~~~~i~g~~l~~~~~~~~~~----------~----~~~~~~H~~lG~~~~~l~~~Q~~~g~~r~~~~~~~r~~~~~~H~~ 265 (334)
++-.+.|+.+++.+..+... + .-.+..|..-.-..++++.+...-|++...-+ |+ .=|.
T Consensus 43 ~~qiitG~~L~~~Y~p~~~~Af~Sv~~i~~~v~~Gw~iR~~H~~gas~~f~~~~lH~~r~~~~gsy~---~~----~~W~ 115 (379)
T MTH00145 43 GIQILTGLFLSMHYTAHVDLAFSSVIHIMRDVNYGWLLRSLHANGASFFFICIYLHIGRGLYYGSYL---MQ----HTWN 115 (379)
T ss_pred HHHHHHHHHHHHHHcCCCchhHHHHHHHHccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHccccc---Cc----hHHH
Confidence 33456788888765432110 0 12345787766666666677776666542211 11 2378
Q ss_pred HHHHHHHHHHHHHHHhhhhccCCCc
Q 019892 266 FGRLALFFASVNIVLGIQIGYAGNE 290 (334)
Q Consensus 266 ~G~~~~~lg~~~i~~G~~~~~~~~~ 290 (334)
.|.+++++.+++.++|..+.-...+
T Consensus 116 ~Gv~l~~l~~~~af~GYvLpw~q~s 140 (379)
T MTH00145 116 IGVTLLLLSMGTAFLGYVLPWGQMS 140 (379)
T ss_pred HhHHHHHHHHHHHHHhhccCccccc
Confidence 9999999999999999999876554
No 126
>PLN02292 ferric-chelate reductase
Probab=37.54 E-value=81 Score=33.43 Aligned_cols=62 Identities=16% Similarity=0.152 Sum_probs=34.2
Q ss_pred CCcccchhhhHHHHHHHHHHHHHhhc---ccCCCCCCcccc-cchhHHHHHHHHHHHHHHHHHhhh
Q 019892 222 ANISAHRGIGIFILVLSILQILAFFL---RPSKDSKFRRFW-NWYHHWFGRLALFFASVNIVLGIQ 283 (334)
Q Consensus 222 ~~~~~H~~lG~~~~~l~~~Q~~~g~~---r~~~~~~~r~~~-~~~H~~~G~~~~~lg~~~i~~G~~ 283 (334)
++...|.++|-++++++++-.+.-.. +.+...+....+ ...-.+.|.++++++.+-+++.+.
T Consensus 204 ~f~~yHRWlGrii~ll~~lH~i~y~i~~~~~~~~~~~~~w~~~~~~~i~G~iAlv~~~il~v~Sl~ 269 (702)
T PLN02292 204 SSIKYHIWLGHLVMTLFTSHGLCYIIYWISMNQVSQMLEWDRTGVSNLAGEIALVAGLVMWATTYP 269 (702)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhhccccchHHHHHHHHHHHHHHHHHHhhH
Confidence 47788999999998888887765432 211111110100 011225677777766665555543
No 127
>cd01663 Cyt_c_Oxidase_I Cytochrome C oxidase subunit I. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Only subunits I and II are essential for function, but subunit III, which is also conserved, may play a role in assembly or oxygen delivery to the active site. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Subunit I contains a heme-copper binuclear center (the active site where O2 is reduced to water) formed by a high-spin heme (heme a3) and a copper ion (CuB). It also contains a low-spin heme (heme a), believ
Probab=37.50 E-value=4.5e+02 Score=26.56 Aligned_cols=58 Identities=12% Similarity=0.031 Sum_probs=38.7
Q ss_pred ccchhhhhHHHHHHHHHHHH-hhhh---hhhhhccCC---CChhhhhhhHHHHHHHHHHHHHHhh
Q 019892 152 SSREKKNHGALGMIGWGIIL-PVGA---IIPRYFKHK---DPLWYYLHAIIQLVGFIFGLATVLL 209 (334)
Q Consensus 152 ~~~~~~~Hg~lm~~aw~~l~-p~gi---l~aR~~k~~---~~~w~~~H~~~q~~~~~~~i~g~~l 209 (334)
.++++..||.+|...|..-. ..|. ++.|..+.. .|..-.++..+..++.+++++++..
T Consensus 45 y~~~~t~Hg~~mif~~~~p~~~~g~~~~lvP~~~g~~dl~~prln~~s~wl~~~g~~l~~~s~~~ 109 (488)
T cd01663 45 YNVIVTAHALIMIFFMVMPALIGGFGNWLVPLMIGAPDMAFPRLNNLSFWLLPPSLLLLLLSALV 109 (488)
T ss_pred hhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHHHHHHHHhc
Confidence 78889999999998887632 2222 344555432 3444466777888888887777766
No 128
>PF15048 OSTbeta: Organic solute transporter subunit beta protein
Probab=37.40 E-value=75 Score=25.77 Aligned_cols=37 Identities=24% Similarity=0.223 Sum_probs=19.8
Q ss_pred CCCcchhhHHHHHHHHHHHHHHHHHHHHhhhCCCCCC
Q 019892 287 AGNEWKIGYGFLLAVVLLAVIVLETLSWMKKRSDKTT 323 (334)
Q Consensus 287 ~~~~~~~~y~~~~~~~~~~~~~le~~~~~~~r~~~~~ 323 (334)
++++|-...-++.++.+++-++|=.+.-+.+|.+|..
T Consensus 31 D~tpWNysiL~Ls~vvlvi~~~LLgrsi~ANRnrK~~ 67 (125)
T PF15048_consen 31 DATPWNYSILALSFVVLVISFFLLGRSIQANRNRKMQ 67 (125)
T ss_pred CCCCcchHHHHHHHHHHHHHHHHHHHHhHhccccccc
Confidence 4556654433344444445555545667777766544
No 129
>PF15183 MRAP: Melanocortin-2 receptor accessory protein family
Probab=37.14 E-value=80 Score=23.74 Aligned_cols=34 Identities=21% Similarity=0.324 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHhhhCCCCCCCCCCcccCCC
Q 019892 299 LAVVLLAVIVLETLSWMKKRSDKTTAPPTFQMNPV 333 (334)
Q Consensus 299 ~~~~~~~~~~le~~~~~~~r~~~~~~~~~~~~~~~ 333 (334)
++++++.+++|-..+|.-.-+. +.....++++||
T Consensus 47 A~FV~~lF~iL~~ms~sgspq~-~~~~k~~~~~p~ 80 (90)
T PF15183_consen 47 AAFVVFLFLILLYMSWSGSPQM-RNSEKHHPMCPW 80 (90)
T ss_pred HHHHHHHHHHHHHHhccCCCCc-CCccccCCCCCc
Confidence 3445555666656666654444 333667888887
No 130
>TIGR03145 cyt_nit_nrfE cytochrome c nitrate reductase biogenesis protein NrfE. Members of this protein family closely resemble the CcmF protein of the CcmABCDEFGH system, or system I, for c-type cytochrome biogenesis (GenProp0678). Members are found, as a rule, next to closely related paralogs of CcmG and CcmH and always located near other genes associated with the cytochrome c nitrite reductase enzyme complex. As a rule, members are found in species that also encode bona fide members of the CcmF, CcmG, and CcmH families.
Probab=37.02 E-value=5e+02 Score=27.25 Aligned_cols=63 Identities=13% Similarity=0.108 Sum_probs=42.0
Q ss_pred ccchhhhhHHHHHHHHH-HHHhhhhhhhhhccCC-CChhhhhhhHHHHHHHHHHHHHHhheeeec
Q 019892 152 SSREKKNHGALGMIGWG-IILPVGAIIPRYFKHK-DPLWYYLHAIIQLVGFIFGLATVLLGIQLY 214 (334)
Q Consensus 152 ~~~~~~~Hg~lm~~aw~-~l~p~gil~aR~~k~~-~~~w~~~H~~~q~~~~~~~i~g~~l~~~~~ 214 (334)
.+.....|+-+.+++.+ +.+|++.-++-..+.. +..|-++=+.+..++.++..+|+++|-...
T Consensus 165 q~~~l~iHpp~l~lgya~~~v~f~~a~~~L~~~~~~~~~~~~~~~~~~~g~~~LT~GI~~G~~WA 229 (628)
T TIGR03145 165 QDIGLIFHPPLLYLGYVGFAVNFAMALAALISGHLDAAVARWSRPWVLLSWVFLTGGIMLGSWWA 229 (628)
T ss_pred cCCChhhhHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788999999999996 4555554444333321 224655555667788888889999986543
No 131
>PF03729 DUF308: Short repeat of unknown function (DUF308); InterPro: IPR005325 This represents a group of short repeats that occurs in a limited number of membrane proteins. It may divide further in short repeats of around 7-10 residues of the pattern G-#-X(2)-#(2)-X (#=hydrophobic).
Probab=36.98 E-value=63 Score=22.46 Aligned_cols=67 Identities=22% Similarity=0.367 Sum_probs=37.6
Q ss_pred HHHHHHHHHhheeeeccccccCCCCcccchhhhHHHHHHHHHHHHHhhcccCCCCCCcccccchhHHHHHHHHHHHHH
Q 019892 199 GFIFGLATVLLGIQLYNKLNVKNANISAHRGIGIFILVLSILQILAFFLRPSKDSKFRRFWNWYHHWFGRLALFFASV 276 (334)
Q Consensus 199 ~~~~~i~g~~l~~~~~~~~~~~~~~~~~H~~lG~~~~~l~~~Q~~~g~~r~~~~~~~r~~~~~~H~~~G~~~~~lg~~ 276 (334)
+.++.++|+.+-..-... ....-..+|+.+++..+.|...++-+ +++. ..+..+...|.+.+++|+.
T Consensus 3 Gil~iv~Gi~~l~~p~~~------~~~~~~i~g~~~i~~Gi~~l~~~~~~-~~~~----~~~~~~l~~gi~~i~~Gi~ 69 (72)
T PF03729_consen 3 GILFIVLGILLLFNPDAS------LAALAIILGIWLIISGIFQLISAFRR-RKGS----KGWWWSLLSGILSIVLGII 69 (72)
T ss_pred HHHHHHHHHHHHHhHHHH------HHHHHHHHHHHHHHHHHHHHHHHHhc-cccc----hhhHHHHHHHHHHHHHHHH
Confidence 455566666554322211 22334577777777777777766542 2211 1235677777777777765
No 132
>MTH00100 CYTB cytochrome b; Provisional
Probab=36.51 E-value=1.6e+02 Score=28.66 Aligned_cols=84 Identities=11% Similarity=0.054 Sum_probs=54.7
Q ss_pred HHHHHHHHhheeeeccccc--------------cCCCCcccchhhhHHHHHHHHHHHHHhhcccCCCCCCcccccchhHH
Q 019892 200 FIFGLATVLLGIQLYNKLN--------------VKNANISAHRGIGIFILVLSILQILAFFLRPSKDSKFRRFWNWYHHW 265 (334)
Q Consensus 200 ~~~~i~g~~l~~~~~~~~~--------------~~~~~~~~H~~lG~~~~~l~~~Q~~~g~~r~~~~~~~r~~~~~~H~~ 265 (334)
++-.+.|+.+++.+..+.. ........|..-.-..++++.+..+-+++...=+. .| =|.
T Consensus 42 ~~qiiTG~~L~~~Y~p~~~~a~~Sv~~i~~~v~~G~~iR~~H~~gas~~~~~~~~H~~r~~~~gsy~~-~~------~W~ 114 (379)
T MTH00100 42 ILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHANGASMFFICLFLHVGRGLYYGSYLF-LE------TWN 114 (379)
T ss_pred HHHHHHHHHHHHHHcCChhhHHHHHHHHHccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccC-ch------HHH
Confidence 4456679988876543311 00124567887666666677777776665422111 11 278
Q ss_pred HHHHHHHHHHHHHHHhhhhccCCCc
Q 019892 266 FGRLALFFASVNIVLGIQIGYAGNE 290 (334)
Q Consensus 266 ~G~~~~~lg~~~i~~G~~~~~~~~~ 290 (334)
.|.+++++.++..++|..+.-+..+
T Consensus 115 ~G~~l~~l~~~~af~Gy~Lpw~q~s 139 (379)
T MTH00100 115 IGIILLFTVMATAFMGYVLPWGQMS 139 (379)
T ss_pred HHHHHHHHHHHHHHHHhccChhhhh
Confidence 9999999999999999999866543
No 133
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=36.20 E-value=52 Score=24.97 Aligned_cols=13 Identities=23% Similarity=0.161 Sum_probs=6.6
Q ss_pred HHHHhhhCCCCCC
Q 019892 311 TLSWMKKRSDKTT 323 (334)
Q Consensus 311 ~~~~~~~r~~~~~ 323 (334)
.+.|-++|+++|+
T Consensus 51 wfvCC~kRkrsRr 63 (94)
T PF05393_consen 51 WFVCCKKRKRSRR 63 (94)
T ss_pred HHHHHHHhhhccC
Confidence 3445555555554
No 134
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=36.10 E-value=3e+02 Score=24.09 Aligned_cols=9 Identities=22% Similarity=0.290 Sum_probs=5.1
Q ss_pred HHHHhhhCC
Q 019892 311 TLSWMKKRS 319 (334)
Q Consensus 311 ~~~~~~~r~ 319 (334)
++.|.+||-
T Consensus 193 ~~~~lkkk~ 201 (206)
T PF06570_consen 193 LRFYLKKKY 201 (206)
T ss_pred HHHHHHHHh
Confidence 355666663
No 135
>PF09323 DUF1980: Domain of unknown function (DUF1980); InterPro: IPR015402 Members of this occur in gene pairs with members of PF03773 from PFAM. The N-terminal region contains several predicted transmembrane helix regions while the few invariant residues (G, CxxD, and W) occur in the C-terminal region. Members of this family are found in a set of prokaryotic hypothetical proteins. Their exact function has not, as yet, been defined.
Probab=35.85 E-value=1.9e+02 Score=24.88 Aligned_cols=22 Identities=23% Similarity=0.369 Sum_probs=11.0
Q ss_pred hhHHHHHHHHHHHHHhhcccCC
Q 019892 230 IGIFILVLSILQILAFFLRPSK 251 (334)
Q Consensus 230 lG~~~~~l~~~Q~~~g~~r~~~ 251 (334)
-.....+++++=.+.|++-|.+
T Consensus 72 ~~~~~y~l~~iPll~g~l~p~~ 93 (182)
T PF09323_consen 72 KKLWSYFLFLIPLLIGFLFPPA 93 (182)
T ss_pred cccHHHHHHHHHHHHHHcCCCc
Confidence 3333444444445567665543
No 136
>PTZ00127 cytochrome c oxidase assembly protein; Provisional
Probab=35.80 E-value=4.4e+02 Score=25.91 Aligned_cols=61 Identities=13% Similarity=-0.031 Sum_probs=36.4
Q ss_pred ccchhhhHHHHHHHHHHHHHhhcccCCCCCCcccccchhHHHHHHHHHHHHHHHHHhhhhcc
Q 019892 225 SAHRGIGIFILVLSILQILAFFLRPSKDSKFRRFWNWYHHWFGRLALFFASVNIVLGIQIGY 286 (334)
Q Consensus 225 ~~H~~lG~~~~~l~~~Q~~~g~~r~~~~~~~r~~~~~~H~~~G~~~~~lg~~~i~~G~~~~~ 286 (334)
..|-.+|++++.+++...+.-..+..+....++.-. --+.+++++.++..+++.+|-...+
T Consensus 219 a~Hll~al~i~~~l~~~~~~l~~~~~~~~~~~~~~~-~lr~l~~~~~~l~~lqI~lGa~Vag 279 (403)
T PTZ00127 219 AAHLFNAFVIYSLLLWNGLTLILFALPSIAPFPELL-KMRLLARGLFALVFLTAMSGAFVAG 279 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccccccccccccch-hHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 589999999988877776432222111111111111 1245677778888899999976654
No 137
>PRK13673 hypothetical protein; Provisional
Probab=35.66 E-value=2.3e+02 Score=22.78 Aligned_cols=24 Identities=25% Similarity=0.307 Sum_probs=17.5
Q ss_pred hhhhHHHHHHHHHHHHHHhheeee
Q 019892 190 YLHAIIQLVGFIFGLATVLLGIQL 213 (334)
Q Consensus 190 ~~H~~~q~~~~~~~i~g~~l~~~~ 213 (334)
.+|..+-+.-++..+.|+.+-+..
T Consensus 32 i~hMilRLfyil~iiTG~~l~~~~ 55 (118)
T PRK13673 32 ILHMILRLFYILIIITGFWLLIRS 55 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 688888887777777787765543
No 138
>cd01661 cbb3_Oxidase_I Cytochrome cbb3 oxidase subunit I. Cytochrome cbb3 oxidase, the terminal oxidase in the respiratory chains of proteobacteria, is a multi-chain transmembrane protein located in the cell membrane. Like other cytochrome oxidases, it catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. Found mainly in proteobacteria, cbb3 is believed to be a modern enzyme that has evolved independently to perform a specialized function in microaerobic energy metabolism. Subunit I contains a heme-copper binuclear center (the active site where O2 is reduced to water) formed by a high-spin heme and a copper ion. It also contains a low-spin heme, believed to participate in the transfer of electrons to the binuclear center. The cbb3 operon contains four genes (ccoNOQP or fixNOQP), with ccoN coding for subunit I. Instead of a CuA-containing subunit II analogous to other cytochrome oxidases, cbb3 utilizes subunits ccoO and ccoP, which contain one and two
Probab=35.65 E-value=4.7e+02 Score=26.42 Aligned_cols=60 Identities=15% Similarity=0.154 Sum_probs=39.7
Q ss_pred ccchhhhhHHHHHHHHHHHHhhhh---hhhhhccCC--CChhhhhhhHHHHHHHHHHHHHHhhee
Q 019892 152 SSREKKNHGALGMIGWGIILPVGA---IIPRYFKHK--DPLWYYLHAIIQLVGFIFGLATVLLGI 211 (334)
Q Consensus 152 ~~~~~~~Hg~lm~~aw~~l~p~gi---l~aR~~k~~--~~~w~~~H~~~q~~~~~~~i~g~~l~~ 211 (334)
..+.+.+|+.+|..+|....-+|. ++.|..+.. .+.+-.....+-.++.+++++++..+.
T Consensus 86 f~~~rt~H~~~~if~w~~~~~~g~~~ylvp~~~g~~l~~~~l~~~~~w~~~~g~~l~~~~~~~G~ 150 (493)
T cd01661 86 FGRLRPLHTNAVIFGFGGNALIATSFYVVQRTCRARLAGGNLAWFVFWGYNLFIVLAATGYLLGI 150 (493)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHHHHHHHHHHHccc
Confidence 778899999999999987665554 234555432 233334455555666777777777664
No 139
>PF13703 PepSY_TM_2: PepSY-associated TM helix
Probab=35.62 E-value=67 Score=24.03 Aligned_cols=25 Identities=20% Similarity=0.379 Sum_probs=20.1
Q ss_pred CcccchhhhHHHHHHHHHHHHHhhc
Q 019892 223 NISAHRGIGIFILVLSILQILAFFL 247 (334)
Q Consensus 223 ~~~~H~~lG~~~~~l~~~Q~~~g~~ 247 (334)
..+.|..+|+......++-.+.|..
T Consensus 60 ~~dlH~~~G~~~~~~ll~~a~TG~~ 84 (88)
T PF13703_consen 60 WFDLHRVLGLWFLPFLLVIALTGLF 84 (88)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4569999999999888887777753
No 140
>TIGR02901 QoxD cytochrome aa3 quinol oxidase, subunit IV. This family (QoxD) encodes subunit IV of the aa3-type quinone oxidase, one of several bacterial terminal oxidases. This complex couples oxidation of reduced quinones with the reduction of molecular oxygen to water and the pumping of protons to form a proton gradient utilized for ATP production. aa3-type oxidases contain two heme a cofactors as well as copper atoms in the active site.
Probab=35.40 E-value=2.1e+02 Score=22.06 Aligned_cols=71 Identities=8% Similarity=0.157 Sum_probs=40.1
Q ss_pred hhhHHHHHHHHHHHHHHhheeeeccccccCCCCcccchhhhHHHHHHHHHHHHHh---hcccCCCCCCcccccchhHHHH
Q 019892 191 LHAIIQLVGFIFGLATVLLGIQLYNKLNVKNANISAHRGIGIFILVLSILQILAF---FLRPSKDSKFRRFWNWYHHWFG 267 (334)
Q Consensus 191 ~H~~~q~~~~~~~i~g~~l~~~~~~~~~~~~~~~~~H~~lG~~~~~l~~~Q~~~g---~~r~~~~~~~r~~~~~~H~~~G 267 (334)
-|..-.+++++++++.|.+... +..+. ...-.++++++++|.+.= |++-+. +.+..||...-++|
T Consensus 8 ~yviGFiLSiiLT~i~F~~v~~--~~~~~--------~~~~~~i~~lA~iQi~VqL~~FLHm~~--~~~~~~n~~~l~ft 75 (94)
T TIGR02901 8 KHVNGFILSLLLTFLALWVALY--SDLPL--------AMGLTIIIIFAFIQAGLQLIMFMHAGE--SEDGKVQIYNIYYS 75 (94)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--ccCCh--------hHHHHHHHHHHHHHHHHHHHHheeecC--CcccchHHHHHHHH
Confidence 4566667778888888777432 22221 133445667788898754 233332 22345777766666
Q ss_pred HHHHHH
Q 019892 268 RLALFF 273 (334)
Q Consensus 268 ~~~~~l 273 (334)
.++.++
T Consensus 76 ~~i~~i 81 (94)
T TIGR02901 76 AFIALV 81 (94)
T ss_pred HHHHHH
Confidence 555443
No 141
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=35.33 E-value=58 Score=21.57 Aligned_cols=24 Identities=13% Similarity=0.249 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhCCCC
Q 019892 296 GFLLAVVLLAVIVLETLSWMKKRSDK 321 (334)
Q Consensus 296 ~~~~~~~~~~~~~le~~~~~~~r~~~ 321 (334)
++...++++++++ +.-|..++++|
T Consensus 12 ~~~~v~~~~~F~g--i~~w~~~~~~k 35 (49)
T PF05545_consen 12 SIGTVLFFVFFIG--IVIWAYRPRNK 35 (49)
T ss_pred HHHHHHHHHHHHH--HHHHHHcccch
Confidence 3334444444444 34444444444
No 142
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=35.19 E-value=1.9e+02 Score=30.02 Aligned_cols=28 Identities=25% Similarity=0.540 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHhhhhccCC-Ccch
Q 019892 265 WFGRLALFFASVNIVLGIQIGYAG-NEWK 292 (334)
Q Consensus 265 ~~G~~~~~lg~~~i~~G~~~~~~~-~~~~ 292 (334)
|+|.++++.|.+-..+|+...+.+ .+|.
T Consensus 241 ~IG~~L~~~Gl~LfLlgl~wgG~~~~~W~ 269 (599)
T PF06609_consen 241 WIGIFLFIAGLALFLLGLSWGGYPYYPWK 269 (599)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCCCCCC
Confidence 799999999999999999998875 4564
No 143
>MTH00156 CYTB cytochrome b; Provisional
Probab=35.03 E-value=1.3e+02 Score=29.10 Aligned_cols=84 Identities=14% Similarity=0.146 Sum_probs=54.5
Q ss_pred HHHHHHHHhheeeecccccc----------C----CCCcccchhhhHHHHHHHHHHHHHhhcccCCCCCCcccccchhHH
Q 019892 200 FIFGLATVLLGIQLYNKLNV----------K----NANISAHRGIGIFILVLSILQILAFFLRPSKDSKFRRFWNWYHHW 265 (334)
Q Consensus 200 ~~~~i~g~~l~~~~~~~~~~----------~----~~~~~~H~~lG~~~~~l~~~Q~~~g~~r~~~~~~~r~~~~~~H~~ 265 (334)
++..+.|+.+++.+..+... + .-.++.|..-.-..++++.+..+-+++...-+ |+ .-|+
T Consensus 32 ~~qiiTG~~L~~~Y~p~~~~A~~Sv~~i~~~v~~Gw~iR~~H~~gas~~~~~~~lH~~r~~~~gsy~---~~----~~W~ 104 (356)
T MTH00156 32 MIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFFFICIYLHIGRGIYYGSYK---LK----HTWM 104 (356)
T ss_pred HHHHHHHHHHHHHhcCCchhHHHHHHHHHccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC---Cc----chhH
Confidence 44566799888876542110 0 12346777666666666677776665542211 11 1478
Q ss_pred HHHHHHHHHHHHHHHhhhhccCCCc
Q 019892 266 FGRLALFFASVNIVLGIQIGYAGNE 290 (334)
Q Consensus 266 ~G~~~~~lg~~~i~~G~~~~~~~~~ 290 (334)
.|.+++++.++..++|..+.-+..+
T Consensus 105 ~G~~l~~~~~~~af~GY~Lpw~q~s 129 (356)
T MTH00156 105 SGVIILFLVMATAFLGYVLPWGQMS 129 (356)
T ss_pred hhHHHHHHHHHHHHeeeeccccchh
Confidence 9999999999999999999876554
No 144
>PRK11513 cytochrome b561; Provisional
Probab=34.20 E-value=85 Score=26.92 Aligned_cols=55 Identities=20% Similarity=0.186 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHhhcccCCCCCCcccccchhHHHHHHHHHHHHHHHHHhhhhcc
Q 019892 232 IFILVLSILQILAFFLRPSKDSKFRRFWNWYHHWFGRLALFFASVNIVLGIQIGY 286 (334)
Q Consensus 232 ~~~~~l~~~Q~~~g~~r~~~~~~~r~~~~~~H~~~G~~~~~lg~~~i~~G~~~~~ 286 (334)
..+.++++.|.+.|..........+..+..+|..+|.++++|.+.=+...+....
T Consensus 14 Wl~a~li~~~~~~~~~~~~~~~~~~~~~~~~H~s~G~~vl~L~v~Rl~~r~~~~~ 68 (176)
T PRK11513 14 WLVFLLVIVAYCAMEFRGFFPRSDRPLINMIHVSCGISILVLMVVRLLLRLKYPT 68 (176)
T ss_pred HHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 3445555566666654321111123344568999999999999999998887543
No 145
>PF06341 DUF1056: Protein of unknown function (DUF1056); InterPro: IPR009406 This entry is represented by Bacteriophage bIL286, Orf42. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several putative head-tail joining bacteriophage proteins.
Probab=33.38 E-value=1.6e+02 Score=20.91 Aligned_cols=31 Identities=13% Similarity=0.279 Sum_probs=24.9
Q ss_pred cccccchhHHHHHHHHHHHHHHHHHhhhhcc
Q 019892 256 RRFWNWYHHWFGRLALFFASVNIVLGIQIGY 286 (334)
Q Consensus 256 r~~~~~~H~~~G~~~~~lg~~~i~~G~~~~~ 286 (334)
|+.++.+-+++..+++++|.+.+-.+..+.+
T Consensus 4 K~~fk~iW~~~DIi~Fila~i~i~it~F~~n 34 (63)
T PF06341_consen 4 KKFFKTIWKYFDIILFILAMIFINITAFLIN 34 (63)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677779999999999999998877654
No 146
>PF14800 DUF4481: Domain of unknown function (DUF4481)
Probab=33.20 E-value=1.2e+02 Score=28.38 Aligned_cols=34 Identities=12% Similarity=0.170 Sum_probs=29.3
Q ss_pred chhHHHHHHHHHHHHHHHHHhhhhccCCCcchhh
Q 019892 261 WYHHWFGRLALFFASVNIVLGIQIGYAGNEWKIG 294 (334)
Q Consensus 261 ~~H~~~G~~~~~lg~~~i~~G~~~~~~~~~~~~~ 294 (334)
+.|..+-.++++.-|++++.|+.+...+.-|...
T Consensus 64 ~fr~~~a~I~yivlw~~l~Stl~l~slg~~wv~~ 97 (308)
T PF14800_consen 64 YFRLLVAVIFYIVLWANLYSTLQLFSLGSHWVGW 97 (308)
T ss_pred HHHHHHHHHHHHHHHHHHHccchhhhcccHHHHH
Confidence 6899999999999999999999999777777543
No 147
>MTH00022 CYTB cytochrome b; Validated
Probab=32.90 E-value=1.7e+02 Score=28.53 Aligned_cols=84 Identities=7% Similarity=0.018 Sum_probs=52.0
Q ss_pred HHHHHHHHhheeeeccccc----------cC----CCCcccchhhhHHHHHHHHHHHHHhhcccCCCCCCcccccchhHH
Q 019892 200 FIFGLATVLLGIQLYNKLN----------VK----NANISAHRGIGIFILVLSILQILAFFLRPSKDSKFRRFWNWYHHW 265 (334)
Q Consensus 200 ~~~~i~g~~l~~~~~~~~~----------~~----~~~~~~H~~lG~~~~~l~~~Q~~~g~~r~~~~~~~r~~~~~~H~~ 265 (334)
++-.+.|+.+++.+..+.. .+ .-....|..=--..++++.+...-|++...=+. +. =|.
T Consensus 41 ~~qiiTG~~La~~Y~p~~~~Af~Sv~~i~~~v~~Gw~iR~~H~~gas~~f~~~~lHi~r~~~~gsy~~--~~-----~W~ 113 (379)
T MTH00022 41 VIQIITGCFLSMHYCSDVSLAFASVGHIMRDVNYGFLLRYLHANGASLFFLCLYIHIGRGLYYGGYLK--FH-----VWN 113 (379)
T ss_pred HHHHHHHHHHHhhhcCChhhHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC--cc-----hhh
Confidence 3345678888876543311 00 124567888444444556666666665421111 11 267
Q ss_pred HHHHHHHHHHHHHHHhhhhccCCCc
Q 019892 266 FGRLALFFASVNIVLGIQIGYAGNE 290 (334)
Q Consensus 266 ~G~~~~~lg~~~i~~G~~~~~~~~~ 290 (334)
.|.+++++.+++.++|..+.-...+
T Consensus 114 ~Gv~l~~l~~~~af~GyvLpw~q~s 138 (379)
T MTH00022 114 VGVVIFLLTMATAFMGYVLPWGQMS 138 (379)
T ss_pred hcHHHHHHHHHHHHheeeecccccc
Confidence 9999999999999999998766544
No 148
>TIGR02125 CytB-hydogenase Ni/Fe-hydrogenase, b-type cytochrome subunit. This model describes a family of cytochrome b proteins which appear to be specific for nickel-iron hydrogenase complexes. Every genome which contains a member of this family posesses a Ni/Fe hydrogenase according to Genome Properties (GenProp0177), and most are gene clustered with other hydrogenase components. Some Ni/Fe hydrogenase-containing species lack a member of this family but contain other CytB homologs (pfam01292) which may substitute for it.
Probab=32.78 E-value=2.2e+02 Score=24.59 Aligned_cols=47 Identities=15% Similarity=0.089 Sum_probs=23.4
Q ss_pred hhhHHHHHHHHHHHHhhhhhhhhhccCC---------CChhhhhhhHHHHHHHHHHH
Q 019892 157 KNHGALGMIGWGIILPVGAIIPRYFKHK---------DPLWYYLHAIIQLVGFIFGL 204 (334)
Q Consensus 157 ~~Hg~lm~~aw~~l~p~gil~aR~~k~~---------~~~w~~~H~~~q~~~~~~~i 204 (334)
..| +++.+++.+++..|..+....... ......+|..+-.+-+++.+
T Consensus 9 ~~H-W~~a~~~i~l~~tG~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~G~~~~~l~l 64 (211)
T TIGR02125 9 LFH-WVRALAIFVLIVTGFYIAYPFLSPPSGEAVHFLQGYIRFVHFAAGFVLIAVLL 64 (211)
T ss_pred HHH-HHHHHHHHHHHHHHHHHcCCCcCCCcccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 344 466677777776666543221110 01234678776655443333
No 149
>PF15330 SIT: SHP2-interacting transmembrane adaptor protein, SIT
Probab=32.48 E-value=87 Score=24.74 Aligned_cols=22 Identities=32% Similarity=0.529 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhC
Q 019892 297 FLLAVVLLAVIVLETLSWMKKR 318 (334)
Q Consensus 297 ~~~~~~~~~~~~le~~~~~~~r 318 (334)
+++++++++-+++.+..|+.+|
T Consensus 5 ~il~llLll~l~asl~~wr~~~ 26 (107)
T PF15330_consen 5 GILALLLLLSLAASLLAWRMKQ 26 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3456666777777788888855
No 150
>PRK10263 DNA translocase FtsK; Provisional
Probab=31.93 E-value=2.2e+02 Score=32.43 Aligned_cols=11 Identities=36% Similarity=0.558 Sum_probs=5.9
Q ss_pred HHHHHHHHHHH
Q 019892 264 HWFGRLALFFA 274 (334)
Q Consensus 264 ~~~G~~~~~lg 274 (334)
+++|.++++++
T Consensus 115 RliGlLLLLLa 125 (1355)
T PRK10263 115 RIIGVLALILT 125 (1355)
T ss_pred HHHHHHHHHHH
Confidence 45566555544
No 151
>PRK09546 zntB zinc transporter; Reviewed
Probab=31.86 E-value=1.3e+02 Score=28.27 Aligned_cols=44 Identities=11% Similarity=0.289 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHhhhhccCC-CcchhhHHHHHHHHHHHHHH
Q 019892 265 WFGRLALFFASVNIVLGIQIGYAG-NEWKIGYGFLLAVVLLAVIV 308 (334)
Q Consensus 265 ~~G~~~~~lg~~~i~~G~~~~~~~-~~~~~~y~~~~~~~~~~~~~ 308 (334)
.+..+.+.+.+++.+.|+...+-| ..|..+|-+++++++++.++
T Consensus 269 ilt~IflPlT~IaGiyGMNf~~mPel~~~~gy~~~l~im~~i~~~ 313 (324)
T PRK09546 269 LMAMVFLPTTFLTGLFGVNLGGIPGGGWPFGFSIFCLLLVVLIGG 313 (324)
T ss_pred HHHHHHHHHHHHHhhhccccCCCCCcCCcchHHHHHHHHHHHHHH
Confidence 445556667777778888866433 44666666555555555444
No 152
>PF12794 MscS_TM: Mechanosensitive ion channel inner membrane domain 1
Probab=31.67 E-value=3.8e+02 Score=25.53 Aligned_cols=58 Identities=17% Similarity=0.150 Sum_probs=24.4
Q ss_pred hhhhHHHHHHHHHHH---HHhhcccCCCCCCc---ccccchhHHHHHHH---HHHHHHHHHHhhhhc
Q 019892 228 RGIGIFILVLSILQI---LAFFLRPSKDSKFR---RFWNWYHHWFGRLA---LFFASVNIVLGIQIG 285 (334)
Q Consensus 228 ~~lG~~~~~l~~~Q~---~~g~~r~~~~~~~r---~~~~~~H~~~G~~~---~~lg~~~i~~G~~~~ 285 (334)
..+|-+.+++.++-. +.-++||....... ...+..|.....++ -+.-++-+..|+...
T Consensus 156 d~LGrl~~ii~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~li~~Pl~li~la~~GY~yT 222 (340)
T PF12794_consen 156 DVLGRLAFIILLLLLAVFLWRLLRPGWGLYQPKPDSWIHRLRYLWWPLLILAPLALIVLALLGYYYT 222 (340)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHccccccccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 356655554443333 23345554322111 22233444433333 333444455565554
No 153
>PF02628 COX15-CtaA: Cytochrome oxidase assembly protein; InterPro: IPR003780 This entry represents 2 activities required for heme biosynthesis: Protoheme IX farnesyltransferase converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group. Heme A synthase catalyzes the oxidation of the C8 methyl side group on heme O porphyrin ring into a formyl group. The entry contains CtaA, which is required for cytochrome aa3 biosynthesis and sporulation in Bacillus subtilis [] and in Saccharomyces cerevisiae (Baker's yeast) the COX15 protein is required for cytochrome c oxidase assembly.; GO: 0016627 oxidoreductase activity, acting on the CH-CH group of donors, 0006461 protein complex assembly, 0055114 oxidation-reduction process, 0016020 membrane
Probab=31.60 E-value=4.2e+02 Score=24.52 Aligned_cols=20 Identities=20% Similarity=0.383 Sum_probs=10.2
Q ss_pred cccchhhhHHHHHHHHHHHH
Q 019892 224 ISAHRGIGIFILVLSILQIL 243 (334)
Q Consensus 224 ~~~H~~lG~~~~~l~~~Q~~ 243 (334)
...|-.++++++.+++...+
T Consensus 131 ~~~Hl~~a~~~~~~l~~~~~ 150 (302)
T PF02628_consen 131 VTLHLLLALLIFALLVWLAL 150 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555444443
No 154
>TIGR00383 corA magnesium Mg(2+) and cobalt Co(2+) transport protein (corA). The article in Microb Comp Genomics 1998;3(3):151-69 (Medline:98448512) discusses this family and suggests that some members may have functions other than Mg2+ transport.
Probab=31.38 E-value=1.5e+02 Score=27.71 Aligned_cols=43 Identities=16% Similarity=0.373 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHhhhhccCC-CcchhhHHHHHHHHHHHHHH
Q 019892 266 FGRLALFFASVNIVLGIQIGYAG-NEWKIGYGFLLAVVLLAVIV 308 (334)
Q Consensus 266 ~G~~~~~lg~~~i~~G~~~~~~~-~~~~~~y~~~~~~~~~~~~~ 308 (334)
+-.+.+.+.+++.+.|+...+-| ..|..+|.+++++++++.++
T Consensus 264 vt~IflP~t~IaGiyGMNf~~mP~l~~~~gy~~~l~~m~~i~~~ 307 (318)
T TIGR00383 264 VSTIFIPLTFIAGIYGMNFKFMPELNWKYGYPAVLIVMAVIALG 307 (318)
T ss_pred HHHHHHHHHHHHHHHhCCcccCccccchhHHHHHHHHHHHHHHH
Confidence 34444455556666666655333 45666776666666655554
No 155
>MTH00191 CYTB cytochrome b; Provisional
Probab=31.32 E-value=2.2e+02 Score=27.60 Aligned_cols=85 Identities=14% Similarity=0.094 Sum_probs=55.9
Q ss_pred HHHHHHHHHhheeeecccccc----------C----CCCcccchhhhHHHHHHHHHHHHHhhcccCCCCCCcccccchhH
Q 019892 199 GFIFGLATVLLGIQLYNKLNV----------K----NANISAHRGIGIFILVLSILQILAFFLRPSKDSKFRRFWNWYHH 264 (334)
Q Consensus 199 ~~~~~i~g~~l~~~~~~~~~~----------~----~~~~~~H~~lG~~~~~l~~~Q~~~g~~r~~~~~~~r~~~~~~H~ 264 (334)
-++..+.|+.+++....+... + .-..+.|.+-.-..++++.+..+-+++...=+. .| -|
T Consensus 38 ~~~q~itG~~L~~~Y~p~~~~a~~Sv~~i~~~v~~G~~~R~~H~~gas~~~~~~~~H~~r~~~~gsy~~-~~------~W 110 (365)
T MTH00191 38 LIIQILTGLFLAMHYTADISLAFSSVVHICRDVNYGWLLRNIHANGASFFFICIYLHIGRGLYYGSYLN-KE------TW 110 (365)
T ss_pred HHHHHHHHHHHHhhhcCCchHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhheecc-ch------hh
Confidence 344566799888765432110 0 124567887777777777777776665422111 11 47
Q ss_pred HHHHHHHHHHHHHHHHhhhhccCCCc
Q 019892 265 WFGRLALFFASVNIVLGIQIGYAGNE 290 (334)
Q Consensus 265 ~~G~~~~~lg~~~i~~G~~~~~~~~~ 290 (334)
+.|.+++++.+++.++|..+.-+..+
T Consensus 111 ~~G~~l~~l~~~~~f~Gy~Lpw~q~s 136 (365)
T MTH00191 111 NVGVILLILSMATAFLGYVLPWGQMS 136 (365)
T ss_pred HhhHHHHHHHHHHHHhhcccccccch
Confidence 89999999999999999999866544
No 156
>MTH00053 CYTB cytochrome b; Provisional
Probab=31.17 E-value=2.4e+02 Score=27.55 Aligned_cols=84 Identities=11% Similarity=0.095 Sum_probs=54.4
Q ss_pred HHHHHHHHhheeeecccccc----------C----CCCcccchhhhHHHHHHHHHHHHHhhcccCCCCCCcccccchhHH
Q 019892 200 FIFGLATVLLGIQLYNKLNV----------K----NANISAHRGIGIFILVLSILQILAFFLRPSKDSKFRRFWNWYHHW 265 (334)
Q Consensus 200 ~~~~i~g~~l~~~~~~~~~~----------~----~~~~~~H~~lG~~~~~l~~~Q~~~g~~r~~~~~~~r~~~~~~H~~ 265 (334)
.+-.+.|+.+++.+..+... + .-.++.|..-.-..++++.+...-|++...=+ | ..=|.
T Consensus 43 ~~qiiTGi~L~~~Y~p~~~~Af~Sv~~i~~~v~~Gw~iR~~H~~gas~~f~~~ylHi~R~~~~gsy~---~----~~~W~ 115 (381)
T MTH00053 43 IIQIITGIFLAMHYCADVNLAFSSVAHITRDVNYGFILRYLHANGASMFFLCVYFHIGRGIYYGSYT---K----IIVWN 115 (381)
T ss_pred HHHHHHHHHHHheccCChHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC---C----chHHH
Confidence 34456799888865433110 0 12356788666666666777776676542211 1 12378
Q ss_pred HHHHHHHHHHHHHHHhhhhccCCCc
Q 019892 266 FGRLALFFASVNIVLGIQIGYAGNE 290 (334)
Q Consensus 266 ~G~~~~~lg~~~i~~G~~~~~~~~~ 290 (334)
.|.+++++.+++.++|..+.-.+.+
T Consensus 116 ~Gv~l~~l~m~~af~GYvLpw~qms 140 (381)
T MTH00053 116 VGVLIFLLMILTAFIGYVLPWGQMS 140 (381)
T ss_pred hhHHHHHHHHHHHHHHhccchhhhh
Confidence 9999999999999999998765543
No 157
>MTH00074 CYTB cytochrome b; Provisional
Probab=31.10 E-value=2e+02 Score=28.08 Aligned_cols=84 Identities=12% Similarity=0.117 Sum_probs=54.4
Q ss_pred HHHHHHHHhheeeeccccc--------------cCCCCcccchhhhHHHHHHHHHHHHHhhcccCCCCCCcccccchhHH
Q 019892 200 FIFGLATVLLGIQLYNKLN--------------VKNANISAHRGIGIFILVLSILQILAFFLRPSKDSKFRRFWNWYHHW 265 (334)
Q Consensus 200 ~~~~i~g~~l~~~~~~~~~--------------~~~~~~~~H~~lG~~~~~l~~~Q~~~g~~r~~~~~~~r~~~~~~H~~ 265 (334)
++-.+.|+.+++....+.. ...-....|..=--..++++.+...-|++...-+ +++ =|+
T Consensus 43 ~~qiitG~~L~~~Y~p~~~~a~~Sv~~i~~~v~~Gw~~R~~H~~gas~~f~~~~lH~~r~~~~gsy~--~~~-----~W~ 115 (380)
T MTH00074 43 IAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLMRNIHANGASFFFICIYLHIGRGLYYGSYM--YKE-----TWN 115 (380)
T ss_pred HHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--Cch-----HHH
Confidence 3446679988876543211 0012456788766666677777776665532111 111 277
Q ss_pred HHHHHHHHHHHHHHHhhhhccCCCc
Q 019892 266 FGRLALFFASVNIVLGIQIGYAGNE 290 (334)
Q Consensus 266 ~G~~~~~lg~~~i~~G~~~~~~~~~ 290 (334)
.|.+++++.+++.++|..+.-+..+
T Consensus 116 ~G~~l~~l~~~~af~Gy~Lpw~q~s 140 (380)
T MTH00074 116 IGVILLFLVMATAFVGYVLPWGQMS 140 (380)
T ss_pred hhHHHHHHHHHHHHHhccccccccc
Confidence 9999999999999999999876554
No 158
>PF02508 Rnf-Nqr: Rnf-Nqr subunit, membrane protein; InterPro: IPR003667 The rnf genes of Rhodobacter capsulatus, essential for nitrogen fixation, are thought to encode a system for electron transport to nitrogenase. The rnfABCDGEH operon comprises seven genes that show similarities in gene arrangement and deduced protein sequences to homologous regions in the genomes of Haemophilus influenzae and Escherichia coli. Four of the rnf gene products were found to be similar in sequence to components of an Na+-dependent NADH:ubiquinone oxidoreductase (NQR) from Vibrio alginolyticus []. The NQR-type enzyme of Klebsiella pneumoniae was shown to catalyse sodium-dependent NADH oxidation in the respiratory chain [].; GO: 0016020 membrane
Probab=31.03 E-value=3.2e+02 Score=23.82 Aligned_cols=100 Identities=20% Similarity=0.235 Sum_probs=58.3
Q ss_pred cccchhhhHHHHHHHHHHHHHhhcccCCCCCCcccccchhHHHHHHHHHHHHHHHHHhhhhccCCC--cc--hhhHHHHH
Q 019892 224 ISAHRGIGIFILVLSILQILAFFLRPSKDSKFRRFWNWYHHWFGRLALFFASVNIVLGIQIGYAGN--EW--KIGYGFLL 299 (334)
Q Consensus 224 ~~~H~~lG~~~~~l~~~Q~~~g~~r~~~~~~~r~~~~~~H~~~G~~~~~lg~~~i~~G~~~~~~~~--~~--~~~y~~~~ 299 (334)
....+.+-.++.+..+.|.+--+++.. ....|+-+|..+-++..=.+.+|..+....+ .. .+.+++..
T Consensus 67 ~~~lr~~~~ilviA~~v~~v~~~l~~~--------~p~l~~~LgiylpLi~~Nc~VLg~~~~~~~~~~~~~~s~~~glg~ 138 (190)
T PF02508_consen 67 PSYLRIIVFILVIASLVQLVEMVLRAY--------FPSLYKALGIYLPLITVNCAVLGRAEFFASKGYSFLESLVDGLGA 138 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--------CHHHHHHHHHhhhHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 355677888888888888877666522 2246777888777766666667766554333 21 13344333
Q ss_pred HHHHHHHHHHHHHHHhhhCCCCCCCCCCcccCCC
Q 019892 300 AVVLLAVIVLETLSWMKKRSDKTTAPPTFQMNPV 333 (334)
Q Consensus 300 ~~~~~~~~~le~~~~~~~r~~~~~~~~~~~~~~~ 333 (334)
++-+.+. +-.....|+|-+..+-++.||..|.
T Consensus 139 glGf~la--l~l~a~iRE~l~~g~ip~~~~g~pi 170 (190)
T PF02508_consen 139 GLGFTLA--LVLLAGIRERLGSGTIPESFRGLPI 170 (190)
T ss_pred HHHHHHH--HHHHHHHHHHHhcCCCCcccCCCch
Confidence 3322222 2244556666444445788888773
No 159
>MTH00119 CYTB cytochrome b; Provisional
Probab=30.79 E-value=2.1e+02 Score=27.82 Aligned_cols=84 Identities=11% Similarity=0.025 Sum_probs=55.3
Q ss_pred HHHHHHHHhheeeecccccc----------C----CCCcccchhhhHHHHHHHHHHHHHhhcccCCCCCCcccccchhHH
Q 019892 200 FIFGLATVLLGIQLYNKLNV----------K----NANISAHRGIGIFILVLSILQILAFFLRPSKDSKFRRFWNWYHHW 265 (334)
Q Consensus 200 ~~~~i~g~~l~~~~~~~~~~----------~----~~~~~~H~~lG~~~~~l~~~Q~~~g~~r~~~~~~~r~~~~~~H~~ 265 (334)
.+..+.|+.+++....+... + .-..+.|.+-.-..++++.+..+-+++...=+ | ..-++
T Consensus 43 ~~qiitG~~L~~~Y~p~~~~a~~Sv~~i~~~v~~G~~iR~~H~~ga~~~~~~~~lH~~r~~~~gsy~---~----~~~W~ 115 (380)
T MTH00119 43 ITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLHANGASMFFICIYLHIGRGLYYGSYL---Y----KETWN 115 (380)
T ss_pred HHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhceec---c----cchhh
Confidence 44566799888776543110 0 12456788666666666777776666542211 1 12488
Q ss_pred HHHHHHHHHHHHHHHhhhhccCCCc
Q 019892 266 FGRLALFFASVNIVLGIQIGYAGNE 290 (334)
Q Consensus 266 ~G~~~~~lg~~~i~~G~~~~~~~~~ 290 (334)
.|.+++++.+...++|..+.-+..+
T Consensus 116 ~Gv~l~~l~~~~~f~Gy~Lpw~q~s 140 (380)
T MTH00119 116 TGVILLLLLMATAFVGYVLPWGQMS 140 (380)
T ss_pred hhhHHHHHHHHHHHHhcccchhhhh
Confidence 9999999999999999999866544
No 160
>PRK10847 hypothetical protein; Provisional
Probab=30.64 E-value=1.5e+02 Score=26.32 Aligned_cols=11 Identities=27% Similarity=0.607 Sum_probs=6.0
Q ss_pred HHhhhCCCCCC
Q 019892 313 SWMKKRSDKTT 323 (334)
Q Consensus 313 ~~~~~r~~~~~ 323 (334)
.|+++|+++++
T Consensus 207 ~~r~~~~~~~~ 217 (219)
T PRK10847 207 IWRHKRAAARA 217 (219)
T ss_pred HHHHHhhhhhc
Confidence 45556555544
No 161
>PF14007 YtpI: YtpI-like protein
Probab=30.56 E-value=1.5e+02 Score=22.57 Aligned_cols=18 Identities=28% Similarity=0.534 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHhhh
Q 019892 266 FGRLALFFASVNIVLGIQ 283 (334)
Q Consensus 266 ~G~~~~~lg~~~i~~G~~ 283 (334)
+|.+.+++|..|++.|+.
T Consensus 62 V~~ifl~lG~~n~~~G~r 79 (89)
T PF14007_consen 62 VGAIFLVLGLFNLFAGIR 79 (89)
T ss_pred HHHHHHHHhHHHHHHHHH
Confidence 444444444444444443
No 162
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=30.00 E-value=17 Score=33.74 Aligned_cols=13 Identities=15% Similarity=-0.130 Sum_probs=0.0
Q ss_pred hhhhHHHHHHHHH
Q 019892 156 KKNHGALGMIGWG 168 (334)
Q Consensus 156 ~~~Hg~lm~~aw~ 168 (334)
-..|..|.+-+-.
T Consensus 19 p~~~a~l~~~~ll 31 (381)
T PF05297_consen 19 PQPHASLLFGLLL 31 (381)
T ss_dssp -------------
T ss_pred CCcchhHHHHHHH
Confidence 3556665554433
No 163
>MTH00224 CYTB cytochrome b; Provisional
Probab=29.51 E-value=1.3e+02 Score=29.42 Aligned_cols=84 Identities=12% Similarity=0.103 Sum_probs=56.1
Q ss_pred HHHHHHHHhheeeecccccc----------C----CCCcccchhhhHHHHHHHHHHHHHhhcccCCCCCCcccccchhHH
Q 019892 200 FIFGLATVLLGIQLYNKLNV----------K----NANISAHRGIGIFILVLSILQILAFFLRPSKDSKFRRFWNWYHHW 265 (334)
Q Consensus 200 ~~~~i~g~~l~~~~~~~~~~----------~----~~~~~~H~~lG~~~~~l~~~Q~~~g~~r~~~~~~~r~~~~~~H~~ 265 (334)
++-.+.|+.+++.+..+... + .-..+.|..-.-..++++.+...-+++...=+. .| =++
T Consensus 43 ~~qiiTGi~L~~~Y~p~~~~Af~Sv~~i~~ev~~Gw~iR~~H~~gas~~f~~~~lH~~R~~~~gsy~~-~~------~W~ 115 (379)
T MTH00224 43 VIQVLTGLFLSMHYAPNIEMAFSSVAHISRDVNYGWLLRSIHANGASMFFLFIYLHVGRGLYYGSFNL-SE------TWN 115 (379)
T ss_pred HHHHHHHHHHHHHHcCCchHHHHHHHHHHccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccC-HH------HHH
Confidence 34466789888766442110 0 124567888887777778888777765422111 11 267
Q ss_pred HHHHHHHHHHHHHHHhhhhccCCCc
Q 019892 266 FGRLALFFASVNIVLGIQIGYAGNE 290 (334)
Q Consensus 266 ~G~~~~~lg~~~i~~G~~~~~~~~~ 290 (334)
.|.+++++.++..++|..+.-+..+
T Consensus 116 ~Gv~l~~l~~~~af~GY~Lpw~q~s 140 (379)
T MTH00224 116 IGVILFILTMATAFLGYVLPWGQMS 140 (379)
T ss_pred HhHHHHHHHHHHHHeEeeeccccch
Confidence 9999999999999999999866554
No 164
>PF04238 DUF420: Protein of unknown function (DUF420); InterPro: IPR007352 This is a predicted membrane protein with four transmembrane helices.
Probab=29.43 E-value=3e+02 Score=22.61 Aligned_cols=86 Identities=16% Similarity=0.162 Sum_probs=51.6
Q ss_pred ccchhhhhHHHHHHHHHHHHhhhh-hhhhhccC-----CCC--------hhhhhhhHHHHHHHHHHHHHHhheeeecccc
Q 019892 152 SSREKKNHGALGMIGWGIILPVGA-IIPRYFKH-----KDP--------LWYYLHAIIQLVGFIFGLATVLLGIQLYNKL 217 (334)
Q Consensus 152 ~~~~~~~Hg~lm~~aw~~l~p~gi-l~aR~~k~-----~~~--------~w~~~H~~~q~~~~~~~i~g~~l~~~~~~~~ 217 (334)
++.....|-.+|..|+++..-+=+ ...|..-. ..+ .+.-.|..+-++++.+.+..+..|+..
T Consensus 27 r~~~~~~Hr~~Ml~a~~ls~lFlv~Yl~~~~~~g~~~f~g~~~ir~~Y~~iL~~Hi~LA~~~~pL~l~tl~~a~~~---- 102 (133)
T PF04238_consen 27 RRGRIKLHRKLMLTAFVLSALFLVSYLYYHFLGGSTPFGGPGWIRPVYLFILISHIILAIVALPLVLYTLYRALRG---- 102 (133)
T ss_pred HhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc----
Confidence 456678999999999876543221 22222111 011 234567777666666666666555532
Q ss_pred ccCCCCcccchhhhHHHHHHHHHHHHHhh
Q 019892 218 NVKNANISAHRGIGIFILVLSILQILAFF 246 (334)
Q Consensus 218 ~~~~~~~~~H~~lG~~~~~l~~~Q~~~g~ 246 (334)
....|+.+|-.++.+.+.-.+.|+
T Consensus 103 -----~~~~Hrki~r~t~piWlyvsvTGv 126 (133)
T PF04238_consen 103 -----RFTRHRKIGRWTFPIWLYVSVTGV 126 (133)
T ss_pred -----ChHHHHHHHHHHHHHHHHHHHHHH
Confidence 235688888888877766666664
No 165
>PRK12456 Na(+)-translocating NADH-quinone reductase subunit E; Provisional
Probab=28.80 E-value=3.4e+02 Score=23.94 Aligned_cols=94 Identities=16% Similarity=0.214 Sum_probs=53.2
Q ss_pred hhhHHHHHHHHHHHHHhhcccCCCCCCcccccchhHHHHHHHHHHHHHHHHHhhhhccCCC--cch--hhHHHHHHHHHH
Q 019892 229 GIGIFILVLSILQILAFFLRPSKDSKFRRFWNWYHHWFGRLALFFASVNIVLGIQIGYAGN--EWK--IGYGFLLAVVLL 304 (334)
Q Consensus 229 ~lG~~~~~l~~~Q~~~g~~r~~~~~~~r~~~~~~H~~~G~~~~~lg~~~i~~G~~~~~~~~--~~~--~~y~~~~~~~~~ 304 (334)
.+-+++.+..+.|.+--+++.. ....|+.+|..+-+...=.+.+|-.+....+ .+. +.+++-.++-+.
T Consensus 81 ~~~fIlvIA~~V~~ve~~l~a~--------~p~Ly~~LGiflpLI~tNCaVLG~al~~~~~~~~~~~s~~~glg~GlGft 152 (199)
T PRK12456 81 FITFIGVLAALVQILEMVLERF--------LPSLHHTLGAFLPLLTIHCAIFGATIFMVQREYTFTESFVYGTGCGLGWM 152 (199)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHhhhHhHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Confidence 3555555666777766665422 2236667777776665555567866654322 221 345544443333
Q ss_pred HHHHHHHHHHhhhCCCCCCCCCCcccCC
Q 019892 305 AVIVLETLSWMKKRSDKTTAPPTFQMNP 332 (334)
Q Consensus 305 ~~~~le~~~~~~~r~~~~~~~~~~~~~~ 332 (334)
..+. ...-.|+|=+..+-++.||.-|
T Consensus 153 lal~--l~a~iRE~l~~~~iP~~~~G~p 178 (199)
T PRK12456 153 LAII--SMAGLREKMKYSNIPKGLQGLG 178 (199)
T ss_pred HHHH--HHHHHHHHHccCCCCcccCCcc
Confidence 3222 4556666756777788888766
No 166
>PF11158 DUF2938: Protein of unknown function (DUF2938); InterPro: IPR021329 This bacterial family of proteins has no known function. Some members are thought to be membrane proteins however this cannot be confirmed.
Probab=28.68 E-value=62 Score=27.21 Aligned_cols=49 Identities=18% Similarity=-0.029 Sum_probs=31.3
Q ss_pred hhhhHHHHH--HHHHHHHHhh--cc--cCCCCCCcccccchhHHHHHHHHHHHHH
Q 019892 228 RGIGIFILV--LSILQILAFF--LR--PSKDSKFRRFWNWYHHWFGRLALFFASV 276 (334)
Q Consensus 228 ~~lG~~~~~--l~~~Q~~~g~--~r--~~~~~~~r~~~~~~H~~~G~~~~~lg~~ 276 (334)
-++|+++.+ ..+.||.+|. .- .++..+.|-.--..|..+|..+++.+.+
T Consensus 95 li~G~~tvl~p~~imqP~lG~G~aas~tP~p~~~r~~sl~aH~vfG~gLyl~~~~ 149 (150)
T PF11158_consen 95 LIFGLVTVLAPFFIMQPALGAGIAASKTPNPWKARLRSLIAHLVFGLGLYLSALA 149 (150)
T ss_pred HHHHHHHHHHHHHHHHHHHhcchhhccCCCchHHHHHHHHHHHHHHHHHHHHhhc
Confidence 367777665 4689999875 32 2222223433456799999999887753
No 167
>COG4329 Predicted membrane protein [Function unknown]
Probab=28.62 E-value=60 Score=26.66 Aligned_cols=20 Identities=30% Similarity=0.446 Sum_probs=9.7
Q ss_pred hhHHHHHHHHHHHHHHHHHh
Q 019892 262 YHHWFGRLALFFASVNIVLG 281 (334)
Q Consensus 262 ~H~~~G~~~~~lg~~~i~~G 281 (334)
.|.|.|-+.+-.|..|++-|
T Consensus 92 a~~~~G~ll~GaGlFnl~eG 111 (160)
T COG4329 92 AKYWWGGLLLGAGLFNLYEG 111 (160)
T ss_pred hhhhhhhhhhcccchheeeh
Confidence 44444554444444444444
No 168
>TIGR01940 nqrE NADH:ubiquinone oxidoreductase, Na(+)-translocating, E subunit. This model represents the NqrE subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.
Probab=28.32 E-value=3.2e+02 Score=24.15 Aligned_cols=95 Identities=17% Similarity=0.198 Sum_probs=54.0
Q ss_pred hhhhHHHHHHHHHHHHHhhcccCCCCCCcccccchhHHHHHHHHHHHHHHHHHhhhhccCCCc--c--hhhHHHHHHHHH
Q 019892 228 RGIGIFILVLSILQILAFFLRPSKDSKFRRFWNWYHHWFGRLALFFASVNIVLGIQIGYAGNE--W--KIGYGFLLAVVL 303 (334)
Q Consensus 228 ~~lG~~~~~l~~~Q~~~g~~r~~~~~~~r~~~~~~H~~~G~~~~~lg~~~i~~G~~~~~~~~~--~--~~~y~~~~~~~~ 303 (334)
+.+-+++.+..+.|.+--+++... ...|+-+|..+-+...=.+.+|-.+....+. + .+.+++-.++-+
T Consensus 82 r~~~fIlvIA~~V~~vem~l~a~~--------p~ly~~LGiflpLI~tNCaVLG~a~~~a~~~~~~~~S~~~glg~GlGf 153 (200)
T TIGR01940 82 ELITFIGVIAALVQILEMVLERFS--------PSLYNALGIFLPLITVNCAIFGGVLFMVQREYNFGESVVYGFGSGLGW 153 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHhhhHhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 566777777778888766654211 2356677777766655555678666543322 2 134444343333
Q ss_pred HHHHHHHHHHHhhhCCCCCCCCCCcccCC
Q 019892 304 LAVIVLETLSWMKKRSDKTTAPPTFQMNP 332 (334)
Q Consensus 304 ~~~~~le~~~~~~~r~~~~~~~~~~~~~~ 332 (334)
...+. ..+-.|+|-+..+-++.||.-|
T Consensus 154 ~lal~--l~a~iRE~l~~~~iP~~~~g~p 180 (200)
T TIGR01940 154 MLAIV--ALAGIREKLKYSDVPKGLQGLG 180 (200)
T ss_pred HHHHH--HHHHHHHHHccCCCCccccchh
Confidence 32222 3455566655667788888665
No 169
>PRK02830 Na(+)-translocating NADH-quinone reductase subunit E; Provisional
Probab=28.31 E-value=3.5e+02 Score=23.97 Aligned_cols=95 Identities=15% Similarity=0.163 Sum_probs=53.3
Q ss_pred hhhhHHHHHHHHHHHHHhhcccCCCCCCcccccchhHHHHHHHHHHHHHHHHHhhhhccCCCc--ch--hhHHHHHHHHH
Q 019892 228 RGIGIFILVLSILQILAFFLRPSKDSKFRRFWNWYHHWFGRLALFFASVNIVLGIQIGYAGNE--WK--IGYGFLLAVVL 303 (334)
Q Consensus 228 ~~lG~~~~~l~~~Q~~~g~~r~~~~~~~r~~~~~~H~~~G~~~~~lg~~~i~~G~~~~~~~~~--~~--~~y~~~~~~~~ 303 (334)
+.+-+++.+..+.|.+--+++... ...++-+|..+-+...=.+.+|..+....+. +. +.+++-.++-+
T Consensus 83 r~~vfIlvIA~~V~~ve~~l~~~~--------p~Ly~~LGiflpLI~~NCaVLG~al~~a~~~~~~~~s~~~glg~GlGf 154 (202)
T PRK02830 83 GFITFIGVIAALVQILEMVLDKYF--------PALYNALGIFLPLITVNCAIFGGVLFMVQRDYNFGESVVYGFGSGIGW 154 (202)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHhhhhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 566777777778888766665222 1345667777666655555677666443322 21 23333333322
Q ss_pred HHHHHHHHHHHhhhCCCCCCCCCCcccCC
Q 019892 304 LAVIVLETLSWMKKRSDKTTAPPTFQMNP 332 (334)
Q Consensus 304 ~~~~~le~~~~~~~r~~~~~~~~~~~~~~ 332 (334)
...+. ..+-.|+|=+..+-++.||.-|
T Consensus 155 ~lal~--l~a~iRE~l~~~~iP~~~~g~p 181 (202)
T PRK02830 155 ALAIV--ALAGIREKMKYSDVPAGLRGLG 181 (202)
T ss_pred HHHHH--HHHHHHHHHccCCCCcccCCcc
Confidence 22222 3455556655677788888766
No 170
>PF01578 Cytochrom_C_asm: Cytochrome C assembly protein; InterPro: IPR002541 This entry consists of various proteins involved in cytochrome c assembly from mitochondria and bacteria; CycK from Rhizobium leguminosarum [], CcmC from Escherichia coli and Paracoccus denitrificans [, ] and orf240 from Triticum aestivum (Wheat) mitochondria []. The members of this family are probably integral membrane proteins with six predicted transmembrane helices that may comprise the membrane component of an ABC (ATP binding cassette) transporter complex. This transporter may be necessary for transport of some component needed for cytochrome c assembly. One member, R. leguminosarum CycK, contains a putative haem-binding motif []. Wheat orf240 also contains a putative haem-binding motif and is a proposed ABC transporter with c-type haem as its proposed substrate []. However it seems unlikely that all members of this family transport haem or c-type apocytochromes because P. denitrificans CcmC transports neither [].; GO: 0006461 protein complex assembly, 0008535 respiratory chain complex IV assembly, 0016020 membrane
Probab=28.26 E-value=2.4e+02 Score=24.61 Aligned_cols=23 Identities=17% Similarity=0.149 Sum_probs=12.4
Q ss_pred cchhhhhHHHHHHHHHHHHhhhh
Q 019892 153 SREKKNHGALGMIGWGIILPVGA 175 (334)
Q Consensus 153 ~~~~~~Hg~lm~~aw~~l~p~gi 175 (334)
+..+.+|..+..++.+.+.=.++
T Consensus 69 ~~~l~iHv~~~~~~ya~~~ia~~ 91 (214)
T PF01578_consen 69 SPWLYIHVPLALLGYAAFAIAAL 91 (214)
T ss_pred cccchhhHHHHHHHHHHHHHHHH
Confidence 34555666666666555554333
No 171
>PF14387 DUF4418: Domain of unknown function (DUF4418)
Probab=28.24 E-value=1.1e+02 Score=24.89 Aligned_cols=27 Identities=15% Similarity=0.065 Sum_probs=17.3
Q ss_pred ChhhhhhhHHHHH---HHHHHHHHHhheee
Q 019892 186 PLWYYLHAIIQLV---GFIFGLATVLLGIQ 212 (334)
Q Consensus 186 ~~w~~~H~~~q~~---~~~~~i~g~~l~~~ 212 (334)
..|.+.|+.-|.. +.++++.|.+..+.
T Consensus 29 g~~M~Ch~tg~a~~~ig~vi~~~~li~~~~ 58 (124)
T PF14387_consen 29 GGHMKCHWTGQAVTGIGAVIAVLSLIMLFV 58 (124)
T ss_pred CCeeeehhHHHHHHHHHHHHHHHHHHHHHh
Confidence 3589999988865 45555555554443
No 172
>COG4097 Predicted ferric reductase [Inorganic ion transport and metabolism]
Probab=27.89 E-value=5.9e+02 Score=25.02 Aligned_cols=24 Identities=13% Similarity=0.185 Sum_probs=20.4
Q ss_pred CCCcccchhhhHHHHHHHHHHHHH
Q 019892 221 NANISAHRGIGIFILVLSILQILA 244 (334)
Q Consensus 221 ~~~~~~H~~lG~~~~~l~~~Q~~~ 244 (334)
+..+..|.+.|+..+++.++-.+.
T Consensus 73 D~~Y~~HK~~sIlailL~l~H~~~ 96 (438)
T COG4097 73 DKIYRFHKYTSILAILLLLAHNFI 96 (438)
T ss_pred hHHhHHHHHHHHHHHHHHHHHHHH
Confidence 457789999999999999888765
No 173
>PF01794 Ferric_reduct: Ferric reductase like transmembrane component; InterPro: IPR013130 This family includes a common region in the transmembrane proteins mammalian cytochrome b-245 heavy chain (gp91-phox), ferric reductase transmembrane component in yeast and respiratory burst oxidase from Arabidopsis thaliana. This may be a family of flavocytochromes capable of moving electrons across the plasma membrane [] that include a potential FAD binding domain. Mutations in the sequence of cytochrome b-245 heavy chain (gp91-phox) lead to the X-linked chronic granulomatous disease. The bacteriocidal ability of phagocytic cells is reduced and is characterised by the absence of a functional plasma membrane associated NADPH oxidase [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0016021 integral to membrane
Probab=27.68 E-value=1.4e+02 Score=23.10 Aligned_cols=80 Identities=15% Similarity=0.173 Sum_probs=39.7
Q ss_pred hhhhhhHHHHHHHHHHHHHHhh-ee--eecc----ccccCCCCcccchhhhHHHHHHHHHHHHHh--hcccCCCCCCccc
Q 019892 188 WYYLHAIIQLVGFIFGLATVLL-GI--QLYN----KLNVKNANISAHRGIGIFILVLSILQILAF--FLRPSKDSKFRRF 258 (334)
Q Consensus 188 w~~~H~~~q~~~~~~~i~g~~l-~~--~~~~----~~~~~~~~~~~H~~lG~~~~~l~~~Q~~~g--~~r~~~~~~~r~~ 258 (334)
....|+.+-..+++++++=.+. .. ...+ .........+.-...|++.+.++++-.+.. .+|. .+.-..
T Consensus 33 ~~~~Hr~lg~~~~~~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~a~~~l~~l~~tS~~~~R~---r~~ye~ 109 (125)
T PF01794_consen 33 LLRFHRWLGRLAFFLALLHGVLYLINWLRFGGWDWQEWFNAWLTGPYNLTGIIALLLLLILAVTSFPWIRR---RRNYEI 109 (125)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH---hCcHHH
Confidence 3458888777766665542111 11 1100 000001233444567887777766665554 3331 222367
Q ss_pred ccchhHHHHHHH
Q 019892 259 WNWYHHWFGRLA 270 (334)
Q Consensus 259 ~~~~H~~~G~~~ 270 (334)
|.+.|...-.+.
T Consensus 110 f~~~H~~~~~~~ 121 (125)
T PF01794_consen 110 FYYLHILFYIAF 121 (125)
T ss_pred HHHHHHHHHHHH
Confidence 788888744433
No 174
>COG4097 Predicted ferric reductase [Inorganic ion transport and metabolism]
Probab=27.45 E-value=76 Score=30.92 Aligned_cols=56 Identities=18% Similarity=0.192 Sum_probs=37.0
Q ss_pred ccchhhhHHHHHHHHHHHHHhhcccCCCCCCc--ccccchhHHHHHHHHHHHHHHHHH
Q 019892 225 SAHRGIGIFILVLSILQILAFFLRPSKDSKFR--RFWNWYHHWFGRLALFFASVNIVL 280 (334)
Q Consensus 225 ~~H~~lG~~~~~l~~~Q~~~g~~r~~~~~~~r--~~~~~~H~~~G~~~~~lg~~~i~~ 280 (334)
..-+.+|.+.++++.+|.++..=.|..+.... -..-.+|+|+|.++++|+++-=++
T Consensus 39 ~~~qf~g~iaL~~msl~~~LA~R~~~iE~~~~GlD~~Y~~HK~~sIlailL~l~H~~~ 96 (438)
T COG4097 39 EFSQFLGFIALALMSLIFLLATRLPLIEAWFNGLDKIYRFHKYTSILAILLLLAHNFI 96 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhchHHHhhhhhhhhHHhHHHHHHHHHHHHHHHHHHHH
Confidence 45567888888888888887743232222111 112358999999999999875443
No 175
>PF00115 COX1: Cytochrome C and Quinol oxidase polypeptide I This family corresponds to chains a and n.; InterPro: IPR000883 Cytochrome c oxidase (1.9.3.1 from EC) is a key enzyme in aerobic metabolism. Proton pumping haem-copper oxidases represent the terminal, energy-transfer enzymes of respiratory chains in prokaryotes and eukaryotes. The CuB-haem a3 (or haem o) binuclear centre, associated with the largest subunit I of cytochrome c and ubiquinol oxidases (1.10.3 from EC), is directly involved in the coupling between dioxygen reduction and proton pumping [, ]. Some terminal oxidases generate a transmembrane proton gradient across the plasma membrane (prokaryotes) or the mitochondrial inner membrane (eukaryotes). The enzyme complex consists of 3-4 subunits (prokaryotes) up to 13 polypeptides (mammals) of which only the catalytic subunit (equivalent to mammalian subunit I (CO I) is found in all haem-copper respiratory oxidases. The presence of a bimetallic centre (formed by a high-spin haem and copper B) as well as a low-spin haem, both ligated to six conserved histidine residues near the outer side of four transmembrane spans within CO I is common to all family members [, , ]. In contrast to eukaryotes the respiratory chain of prokaryotes is branched to multiple terminal oxidases. The enzyme complexes vary in haem and copper composition, substrate type and substrate affinity. The different respiratory oxidases allow the cells to customize their respiratory systems according to a variety of environmental growth conditions []. It has been shown that eubacterial quinol oxidase was derived from cytochrome c oxidase in Gram-positive bacteria and that archaebacterial quinol oxidase has an independent origin. A considerable amount of evidence suggests that proteobacteria (Purple bacteria) acquired quinol oxidase through a lateral gene transfer from Gram-positive bacteria []. Nitric oxide reductase (NOR) (1.7.99.7 from EC) exists in denitrifying species of archae and eubacteria and is a heterodimer of cytochromes b and c. Phenazine methosulphate can act as acceptor.; GO: 0004129 cytochrome-c oxidase activity, 0005506 iron ion binding, 0009055 electron carrier activity, 0020037 heme binding, 0009060 aerobic respiration, 0055114 oxidation-reduction process, 0016021 integral to membrane; PDB: 3O0R_B 3FYI_C 2GSM_A 3FYE_C 3DTU_C 1M57_A 1M56_G 3ABK_N 2Y69_N 1V55_A ....
Probab=27.41 E-value=92 Score=30.89 Aligned_cols=61 Identities=21% Similarity=0.410 Sum_probs=40.7
Q ss_pred ccchhhhhHHHHHHHHHHHHhhh---hhhhhhccCC---CChhhhhhhHHHHHHHHHHHHHHhheee
Q 019892 152 SSREKKNHGALGMIGWGIILPVG---AIIPRYFKHK---DPLWYYLHAIIQLVGFIFGLATVLLGIQ 212 (334)
Q Consensus 152 ~~~~~~~Hg~lm~~aw~~l~p~g---il~aR~~k~~---~~~w~~~H~~~q~~~~~~~i~g~~l~~~ 212 (334)
.+..+.+||.+|...|....-.| .++.|..+.. .|..-.+...+..++.+++++++.++..
T Consensus 42 y~~~~t~Hg~~mif~~~~~~~~g~~~y~~p~~~g~~d~~~prl~~~~fwl~~~~~~~~~~s~~~g~~ 108 (447)
T PF00115_consen 42 YNQLRTVHGNLMIFWFAMPFIIGFGNYLIPRMIGARDLAFPRLNWLSFWLLPIGVVLALVSIFLGGG 108 (447)
T ss_pred eeeeehhhheeeeeeccCchHHHHHheechhhcCCCCchhhhhhhEEEeehhhHHHHHhhccccccc
Confidence 67889999999998887666555 1233444432 2444556666777777777777777654
No 176
>PF15099 PIRT: Phosphoinositide-interacting protein family
Probab=27.26 E-value=38 Score=27.51 Aligned_cols=22 Identities=18% Similarity=0.181 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHhhhhcc
Q 019892 265 WFGRLALFFASVNIVLGIQIGY 286 (334)
Q Consensus 265 ~~G~~~~~lg~~~i~~G~~~~~ 286 (334)
-+|-+++++|++--.+.+....
T Consensus 54 pfG~vili~GvvvT~vays~n~ 75 (129)
T PF15099_consen 54 PFGVVILIAGVVVTAVAYSFNS 75 (129)
T ss_pred EehHHHHHHhhHhheeeEeecC
Confidence 4788888888776555555533
No 177
>PHA03049 IMV membrane protein; Provisional
Probab=27.01 E-value=1.3e+02 Score=21.64 Aligned_cols=31 Identities=16% Similarity=0.324 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHH-HhhhCCCCCCC--CCCc-ccCC
Q 019892 302 VLLAVIVLETLS-WMKKRSDKTTA--PPTF-QMNP 332 (334)
Q Consensus 302 ~~~~~~~le~~~-~~~~r~~~~~~--~~~~-~~~~ 332 (334)
++++.++|-+++ +.|+|...++. .|.+ +||+
T Consensus 10 ICVaIi~lIvYgiYnkk~~~q~~~p~~e~ye~~e~ 44 (68)
T PHA03049 10 ICVVIIGLIVYGIYNKKTTTSQNPPSQEKYEKMED 44 (68)
T ss_pred HHHHHHHHHHHHHHhcccccCCCCCChhhccCchh
Confidence 344444444454 55555444332 2455 5554
No 178
>PF12650 DUF3784: Domain of unknown function (DUF3784); InterPro: IPR017259 This group represents an uncharacterised conserved protein.
Probab=26.83 E-value=1.9e+02 Score=21.90 Aligned_cols=28 Identities=11% Similarity=0.292 Sum_probs=22.6
Q ss_pred cchhHHHHHHHHHHHHHHHHHhhhhccC
Q 019892 260 NWYHHWFGRLALFFASVNIVLGIQIGYA 287 (334)
Q Consensus 260 ~~~H~~~G~~~~~lg~~~i~~G~~~~~~ 287 (334)
+.+=+..|+..++.|++.+..++...-.
T Consensus 40 ~~l~r~~g~~~~~~~i~~li~~l~~~~~ 67 (97)
T PF12650_consen 40 KKLCRFMGKFMLIIGIILLIGGLLSFFQ 67 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4677899999999999999998854433
No 179
>COG4244 Predicted membrane protein [Function unknown]
Probab=26.78 E-value=4e+02 Score=22.68 Aligned_cols=116 Identities=11% Similarity=0.146 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHhhhhhhhhhccCCCChhhhhhhHHHHHHHHHHHHHHhheeeecccccc---CCCCcccchhhhHHH
Q 019892 158 NHGALGMIGWGIILPVGAIIPRYFKHKDPLWYYLHAIIQLVGFIFGLATVLLGIQLYNKLNV---KNANISAHRGIGIFI 234 (334)
Q Consensus 158 ~Hg~lm~~aw~~l~p~gil~aR~~k~~~~~w~~~H~~~q~~~~~~~i~g~~l~~~~~~~~~~---~~~~~~~H~~lG~~~ 234 (334)
+|=-+-.+...+...+.-+..+-.+ |+..-+.....+.++..+.++.++...-.... .......|..+|.++
T Consensus 22 VhFpI~l~v~ali~D~~~~~~~~~~-----~~~vs~wn~~~a~i~~~~A~~~g~~e~lla~~~~~a~~~a~wh~~lG~il 96 (160)
T COG4244 22 VHFPIGLFVAALIFDLVGFLTGKDR-----WFDVSWWNLFAALIAGFFAVIAGLFEFLLARPGGAAKQAAEWHHVLGNIL 96 (160)
T ss_pred cchHHHHHHHHHHHHHHHHhhhhHH-----HHHhHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHhhcccCCCCCCcccccchhHHHHHHHHHHHHHHHHHh
Q 019892 235 LVLSILQILAFFLRPSKDSKFRRFWNWYHHWFGRLALFFASVNIVLG 281 (334)
Q Consensus 235 ~~l~~~Q~~~g~~r~~~~~~~r~~~~~~H~~~G~~~~~lg~~~i~~G 281 (334)
.+++.+--+.-+.+ ..+......+.=-+++.++.+|=.++..+|
T Consensus 97 ~~~la~~~~~r~~~---~~~~~~~v~~~~L~lsl~~~~Lv~l~g~lG 140 (160)
T COG4244 97 LIVLAILTAWRYVH---RNDAVAAVSPAGLLLSLATVLLVALQGYLG 140 (160)
T ss_pred HHHHHHHHHHHHHH---HcCChhhccHHHHHHHHHHHHHHHHHHHHh
No 180
>PF15099 PIRT: Phosphoinositide-interacting protein family
Probab=26.60 E-value=66 Score=26.15 Aligned_cols=27 Identities=19% Similarity=0.258 Sum_probs=19.9
Q ss_pred ccchhhhHHHHHHHHHHHHHh-h-cccCC
Q 019892 225 SAHRGIGIFILVLSILQILAF-F-LRPSK 251 (334)
Q Consensus 225 ~~H~~lG~~~~~l~~~Q~~~g-~-~r~~~ 251 (334)
+.-+++|.+++.+.++-.+.| + ++|..
T Consensus 78 si~~~~G~vlLs~GLmlL~~~alcW~~~~ 106 (129)
T PF15099_consen 78 SIISIFGPVLLSLGLMLLACSALCWKPII 106 (129)
T ss_pred chhhhehHHHHHHHHHHHHhhhheehhhh
Confidence 456789999999888888877 3 35543
No 181
>PRK12585 putative monovalent cation/H+ antiporter subunit G; Reviewed
Probab=26.42 E-value=1.2e+02 Score=26.70 Aligned_cols=23 Identities=17% Similarity=0.124 Sum_probs=15.8
Q ss_pred hhhhhhhH--HHHHHHHHHHHHHhh
Q 019892 187 LWYYLHAI--IQLVGFIFGLATVLL 209 (334)
Q Consensus 187 ~w~~~H~~--~q~~~~~~~i~g~~l 209 (334)
..-++|+. ...+|+.+.++|.++
T Consensus 33 ~YtRLHAATKa~TLGv~LILlgv~l 57 (197)
T PRK12585 33 VYTRTHAAGISNTFGVSLLLFATVG 57 (197)
T ss_pred HHHHhhccccchhhhHHHHHHHHHH
Confidence 45689986 556677777777655
No 182
>COG3658 Cytochrome b [Energy production and conversion]
Probab=26.30 E-value=4.2e+02 Score=22.77 Aligned_cols=59 Identities=17% Similarity=0.093 Sum_probs=38.1
Q ss_pred ccchhhhHHHHHHHHHHHHHhhcccC----------CC---------CCCcccccchhHHHHHHH----HHHHHHHHHHh
Q 019892 225 SAHRGIGIFILVLSILQILAFFLRPS----------KD---------SKFRRFWNWYHHWFGRLA----LFFASVNIVLG 281 (334)
Q Consensus 225 ~~H~~lG~~~~~l~~~Q~~~g~~r~~----------~~---------~~~r~~~~~~H~~~G~~~----~~lg~~~i~~G 281 (334)
.+|.++|++++.++.+-...|++-+. +. -+.|.-...-|--+|-++ +.+-.+++.+|
T Consensus 35 ~~H~wvGyav~allalRL~WG~igs~~ARf~af~pspa~a~~~lke~~~gr~~~h~gHNPlGAlmv~Amw~~l~~~v~TG 114 (192)
T COG3658 35 QLHTWVGYAVLALLALRLCWGIIGSDTARFSAFVPSPAGAREYLKEGIPGREHIHPGHNPLGALMVVAMWALLLAQVGTG 114 (192)
T ss_pred ChhHHHHHHHHHHHHHHHHhcccccchhhhhccCCChHHHHHHHHhhccCCccCCCCCCchhHHHHHHHHHHHHHHHhhh
Confidence 78999999999999999998875332 10 122333345566666544 34445566677
Q ss_pred hh
Q 019892 282 IQ 283 (334)
Q Consensus 282 ~~ 283 (334)
..
T Consensus 115 ~l 116 (192)
T COG3658 115 WL 116 (192)
T ss_pred hh
Confidence 54
No 183
>COG1276 PcoD Putative copper export protein [Inorganic ion transport and metabolism]
Probab=26.25 E-value=5.3e+02 Score=24.16 Aligned_cols=88 Identities=15% Similarity=0.053 Sum_probs=46.5
Q ss_pred ccchhhhhHHHHHHHHHHHHhhhhhhhhhccCC-CChhhhhhh----HHHHHHHHHHHHHHhheeeeccccccCCCCccc
Q 019892 152 SSREKKNHGALGMIGWGIILPVGAIIPRYFKHK-DPLWYYLHA----IIQLVGFIFGLATVLLGIQLYNKLNVKNANISA 226 (334)
Q Consensus 152 ~~~~~~~Hg~lm~~aw~~l~p~gil~aR~~k~~-~~~w~~~H~----~~q~~~~~~~i~g~~l~~~~~~~~~~~~~~~~~ 226 (334)
.......|...+.+=.+-|.|+....+ +-|.. .+.=.+.|+ .....-..+.+.|.++......+.. ...
T Consensus 143 ~~~~~~lHllaaa~W~GgLl~ll~~~~-~~~~r~~~~a~~~~rRFS~~~~~aVa~llvsGll~~~~~I~~~~-----~l~ 216 (289)
T COG1276 143 HQTLHFLHLLAAAFWVGGLLPLLLCLA-PDKARPATEAIEVLRRFSLYGHFAVAVLLVSGLLLNVLLIQGFS-----PLF 216 (289)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHh-hccccCchHHHHHHHHHHhHHHHHHHHHHHHHHHhHhheecccc-----hhh
Confidence 455678999999887889999766553 22221 111112222 2222223334567667666655543 255
Q ss_pred chhhhHHHHH---HHHHHHHHh
Q 019892 227 HRGIGIFILV---LSILQILAF 245 (334)
Q Consensus 227 H~~lG~~~~~---l~~~Q~~~g 245 (334)
|..-|-.++. ++.+....|
T Consensus 217 tT~YGqlLL~K~~Lfv~ml~la 238 (289)
T COG1276 217 TTAYGQLLLVKLILFVLMLALA 238 (289)
T ss_pred hhHhhHHHHHHHHHHHHHHHHH
Confidence 6666665553 334444444
No 184
>PRK01061 Na(+)-translocating NADH-quinone reductase subunit E; Provisional
Probab=26.14 E-value=2.9e+02 Score=25.19 Aligned_cols=95 Identities=14% Similarity=0.102 Sum_probs=50.6
Q ss_pred hhhhHHHHHHHHHHHHHhhcccCCCCCCcccccchhHHHHHHHHHHHHHHHHHhhhhcc--CCCcch--hhHHHHHHHHH
Q 019892 228 RGIGIFILVLSILQILAFFLRPSKDSKFRRFWNWYHHWFGRLALFFASVNIVLGIQIGY--AGNEWK--IGYGFLLAVVL 303 (334)
Q Consensus 228 ~~lG~~~~~l~~~Q~~~g~~r~~~~~~~r~~~~~~H~~~G~~~~~lg~~~i~~G~~~~~--~~~~~~--~~y~~~~~~~~ 303 (334)
+.+-+++++..+.|.+--+++... ...++-+|..+-++..=.+.+|..+.. .+..+. +.|++-.++-+
T Consensus 92 r~ivfIlvIA~~Vq~vem~L~a~~--------p~Ly~aLGifLPLIttNCaVLG~al~~~~~~~~~~~S~~~Glg~GlGf 163 (244)
T PRK01061 92 ELIIFIVVIAAFTQILELLLEKVS--------RNLYLSLGIFLPLIAVNCAILGGVLFGITRNYPFIPMMIFSLGAGCGW 163 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh--------HHHHHHHhcchhHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHH
Confidence 345555666667777766554211 134556776666555555556765432 222222 34544444333
Q ss_pred HHHHHHHHHHHhhhCCCCCCCCCCcccCC
Q 019892 304 LAVIVLETLSWMKKRSDKTTAPPTFQMNP 332 (334)
Q Consensus 304 ~~~~~le~~~~~~~r~~~~~~~~~~~~~~ 332 (334)
.+.+. ...-.|+|=+..+-++.||.-|
T Consensus 164 tLALv--l~a~iRErL~~~~iP~~~~G~p 190 (244)
T PRK01061 164 WLAIV--LFATIREKLAYSDVPKNLQGMG 190 (244)
T ss_pred HHHHH--HHHHHHHHhccCCCCccccchh
Confidence 33222 3456666655667788888766
No 185
>TIGR00930 2a30 K-Cl cotransporter.
Probab=26.07 E-value=3.5e+02 Score=29.87 Aligned_cols=28 Identities=21% Similarity=0.553 Sum_probs=19.9
Q ss_pred CCCcccccchhHHHHHHHHHHHHHHHHH
Q 019892 253 SKFRRFWNWYHHWFGRLALFFASVNIVL 280 (334)
Q Consensus 253 ~~~r~~~~~~H~~~G~~~~~lg~~~i~~ 280 (334)
...|+.|+++|++++.+..++..+-++.
T Consensus 489 p~~RP~fk~~~~~~sllG~l~c~~lmf~ 516 (953)
T TIGR00930 489 PGWRPRFKYYHWWLSLLGASLCCAIMFL 516 (953)
T ss_pred CCCCCccccchHHHHHHHHHHHHHHHHH
Confidence 3468888999998877776666555444
No 186
>PF10002 DUF2243: Predicted membrane protein (DUF2243); InterPro: IPR018719 This entry includes membrane proteins of unknown function.
Probab=25.97 E-value=3.3e+02 Score=22.72 Aligned_cols=51 Identities=12% Similarity=0.131 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHhheeeeccccccCCCCcccchhhhHHHHHHHHHHHHHhhc
Q 019892 194 IIQLVGFIFGLATVLLGIQLYNKLNVKNANISAHRGIGIFILVLSILQILAFFL 247 (334)
Q Consensus 194 ~~q~~~~~~~i~g~~l~~~~~~~~~~~~~~~~~H~~lG~~~~~l~~~Q~~~g~~ 247 (334)
.++....+++++|+.+-+-...... ..-+.-...|-+++....+|.+=|++
T Consensus 50 LFHa~~~~~~~~Gl~lL~r~~~r~~---~~~~~~~~~g~~l~G~G~Fnl~dG~v 100 (143)
T PF10002_consen 50 LFHAFTWVATVAGLFLLWRADRRRR---RPWSGRRLWGGVLLGWGLFNLVDGVV 100 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhccc---cCccchhhHHHHHHHhhHHHHHHHHH
Confidence 3444556666666655442111111 13355667777777777777776654
No 187
>PF14898 DUF4491: Domain of unknown function (DUF4491)
Probab=25.44 E-value=1.3e+02 Score=23.21 Aligned_cols=8 Identities=38% Similarity=0.418 Sum_probs=5.7
Q ss_pred CCcccCCC
Q 019892 326 PTFQMNPV 333 (334)
Q Consensus 326 ~~~~~~~~ 333 (334)
-=||+||-
T Consensus 85 GWFP~NPk 92 (94)
T PF14898_consen 85 GWFPKNPK 92 (94)
T ss_pred CCCCCCCC
Confidence 34888885
No 188
>PF05745 CRPA: Chlamydia 15 kDa cysteine-rich outer membrane protein (CRPA); InterPro: IPR008436 Chlamydia is a genus of bacteria, which causes the most common bacterial sexually transmitted diseases. They are obligate intracellular bacterial pathogens. Members of this genus lack a peptidoglycan layer, but as a substitute, it has been proposed that they have several cysteine rich membrane proteins. This includes the major outer membrane protein (MOMP). These form disulphide bonds to provide rigidity to the cell wall. The alignment of the amino acid sequences of the MOMP from various serovars of Chlamydia show that they have between seven and ten cysteine residues; seven of which are highly conserved []. The MOMP has been the focus of efforts to produce a vaccine for Chlamydia trachomatis []. The 15 kDa cysteine-rich protein in this entry is a multi-pass outer membrane protein. They are associated with the differentiation of reticulate bodies (RBs) into elementary bodies (EBs) []. They immunolocalise to the inclusion membrane, which is the membrane that surrounds the intracellular parasite. These proteins are recognised by CD8+ T cells in both human and mouse infections, suggesting they gain access to the host cytoplasm.; GO: 0019867 outer membrane
Probab=24.52 E-value=1.2e+02 Score=24.94 Aligned_cols=28 Identities=21% Similarity=0.336 Sum_probs=22.0
Q ss_pred hhHHHHHHHHHHHHHHhheeeecccccc
Q 019892 192 HAIIQLVGFIFGLATVLLGIQLYNKLNV 219 (334)
Q Consensus 192 H~~~q~~~~~~~i~g~~l~~~~~~~~~~ 219 (334)
...+.++++++.++|+++-|........
T Consensus 65 qItl~VlGiiLviagl~l~fil~~~lg~ 92 (150)
T PF05745_consen 65 QITLVVLGIILVIAGLALTFILHSQLGN 92 (150)
T ss_pred hhhHHHHHHHHHHHHHHHHhhehhhhcC
Confidence 4567778999999999999888766543
No 189
>PF04277 OAD_gamma: Oxaloacetate decarboxylase, gamma chain ; InterPro: IPR005899 This family comprises distantly related, low complexity, hydrophobic small subunits of several related sodium ion-pumping decarboxylases. These include oxaloacetate decarboxylase gamma subunit and methylmalonyl-CoA decarboxylase delta subunit [].; GO: 0008948 oxaloacetate decarboxylase activity, 0015081 sodium ion transmembrane transporter activity, 0071436 sodium ion export, 0016020 membrane
Probab=24.49 E-value=1.6e+02 Score=21.38 Aligned_cols=25 Identities=24% Similarity=0.614 Sum_probs=13.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhC
Q 019892 294 GYGFLLAVVLLAVIVLETLSWMKKR 318 (334)
Q Consensus 294 ~y~~~~~~~~~~~~~le~~~~~~~r 318 (334)
+++++..++++++++....++..+|
T Consensus 11 Gm~iVF~~L~lL~~~i~l~~~~~~~ 35 (79)
T PF04277_consen 11 GMGIVFLVLILLILVISLMSKLIRK 35 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4555555555666666666655433
No 190
>PF01578 Cytochrom_C_asm: Cytochrome C assembly protein; InterPro: IPR002541 This entry consists of various proteins involved in cytochrome c assembly from mitochondria and bacteria; CycK from Rhizobium leguminosarum [], CcmC from Escherichia coli and Paracoccus denitrificans [, ] and orf240 from Triticum aestivum (Wheat) mitochondria []. The members of this family are probably integral membrane proteins with six predicted transmembrane helices that may comprise the membrane component of an ABC (ATP binding cassette) transporter complex. This transporter may be necessary for transport of some component needed for cytochrome c assembly. One member, R. leguminosarum CycK, contains a putative haem-binding motif []. Wheat orf240 also contains a putative haem-binding motif and is a proposed ABC transporter with c-type haem as its proposed substrate []. However it seems unlikely that all members of this family transport haem or c-type apocytochromes because P. denitrificans CcmC transports neither [].; GO: 0006461 protein complex assembly, 0008535 respiratory chain complex IV assembly, 0016020 membrane
Probab=24.48 E-value=4.7e+02 Score=22.69 Aligned_cols=25 Identities=24% Similarity=0.568 Sum_probs=13.6
Q ss_pred hhhhhhhHHHHHHHHHHHHHHhhee
Q 019892 187 LWYYLHAIIQLVGFIFGLATVLLGI 211 (334)
Q Consensus 187 ~w~~~H~~~q~~~~~~~i~g~~l~~ 211 (334)
.|+.+|..+-.++..+..++++.+.
T Consensus 70 ~~l~iHv~~~~~~ya~~~ia~~~al 94 (214)
T PF01578_consen 70 PWLYIHVPLALLGYAAFAIAALAAL 94 (214)
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHH
Confidence 4566666666555555555544443
No 191
>PRK12405 electron transport complex RsxE subunit; Provisional
Probab=24.35 E-value=5.3e+02 Score=23.31 Aligned_cols=69 Identities=17% Similarity=0.217 Sum_probs=36.2
Q ss_pred hHHHHHHHHHHHHhhhhhhhhhccCCCChhhhhhhHHHHHHHHHHHHHHhheeeec-cccccCCCCcccchhhhHHHHHH
Q 019892 159 HGALGMIGWGIILPVGAIIPRYFKHKDPLWYYLHAIIQLVGFIFGLATVLLGIQLY-NKLNVKNANISAHRGIGIFILVL 237 (334)
Q Consensus 159 Hg~lm~~aw~~l~p~gil~aR~~k~~~~~w~~~H~~~q~~~~~~~i~g~~l~~~~~-~~~~~~~~~~~~H~~lG~~~~~l 237 (334)
.++-|.+|..+.+-.+.......|+.-+.+ ++...+++.++.++...... +.. ....|+.+|+.+=..
T Consensus 37 nalgmGlA~~~Vl~~S~~~~sllr~~i~~~------lRi~v~IlvIA~~V~~v~~~L~a~-----~p~l~~~LGiflpLI 105 (231)
T PRK12405 37 NALGLGLATTLVLVCSNLTVSLLRKWIPKE------IRIPIFVMIIASFVTVVQLLMNAY-----AYGLYQSLGIFIPLI 105 (231)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHH------HHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHhhhhhhHH
Confidence 477788888777666666665555432333 44444444444444332211 221 335666777665544
Q ss_pred H
Q 019892 238 S 238 (334)
Q Consensus 238 ~ 238 (334)
.
T Consensus 106 v 106 (231)
T PRK12405 106 V 106 (231)
T ss_pred H
Confidence 3
No 192
>KOG4293 consensus Predicted membrane protein, contains DoH and Cytochrome b-561/ferric reductase transmembrane domains [Signal transduction mechanisms]
Probab=24.31 E-value=18 Score=35.62 Aligned_cols=112 Identities=21% Similarity=0.243 Sum_probs=59.8
Q ss_pred cchhhhhHHHHHHHHH-HHHhhhhhhhhhccCC--CChhhhhhhHHHHHHHHHHHHHHhheeeecc---ccccCCCCccc
Q 019892 153 SREKKNHGALGMIGWG-IILPVGAIIPRYFKHK--DPLWYYLHAIIQLVGFIFGLATVLLGIQLYN---KLNVKNANISA 226 (334)
Q Consensus 153 ~~~~~~Hg~lm~~aw~-~l~p~gil~aR~~k~~--~~~w~~~H~~~q~~~~~~~i~g~~l~~~~~~---~~~~~~~~~~~ 226 (334)
.....+|..++...+. -++....+++|-.|.. ++.|=+.|...--...++.++-...++...+ ++.. -.....
T Consensus 278 ~~~~~~h~~~G~~~~~l~~lQ~~~~l~Rp~~~~k~R~~~nwyH~~~g~~~~~~~~~~i~~~~~l~~~~~~w~~-~~~~~~ 356 (403)
T KOG4293|consen 278 GTVYSAHTDLGIILLVLAFLQPLALLLRPLPESKIRRYWNWYHHLVGRLSIILGIVNIFDGLELLYPGQSWIK-LGYGSI 356 (403)
T ss_pred ceeeeecccchhHHHHHHHHHHHHHHhcCCcccCceeccceeeeecCcceeeehhhHHhhhHhhhcCCCceEE-eeeeeE
Confidence 3456677777776665 2233444556654432 3455566665543333333333333332221 1210 124567
Q ss_pred chhhhHHHHHHHHHHHHHhhcccCCCCCCcccccchhHH
Q 019892 227 HRGIGIFILVLSILQILAFFLRPSKDSKFRRFWNWYHHW 265 (334)
Q Consensus 227 H~~lG~~~~~l~~~Q~~~g~~r~~~~~~~r~~~~~~H~~ 265 (334)
|..+|.+..++-.+|.....-|+++++..|...++.|+-
T Consensus 357 ~~~~~~~~~~le~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (403)
T KOG4293|consen 357 LAVLGLIAVILEILSWRITIERPSPSSMSRTSTNAPSRG 395 (403)
T ss_pred EEEechhhhhhhhheeeeeecccCcccccccccCccccc
Confidence 788888887777777666666666666566666665553
No 193
>COG0598 CorA Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]
Probab=24.13 E-value=1.5e+02 Score=27.98 Aligned_cols=44 Identities=20% Similarity=0.353 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHhhhhccC-CCcchhhHHHHHHHHHHHHHHH
Q 019892 266 FGRLALFFASVNIVLGIQIGYA-GNEWKIGYGFLLAVVLLAVIVL 309 (334)
Q Consensus 266 ~G~~~~~lg~~~i~~G~~~~~~-~~~~~~~y~~~~~~~~~~~~~l 309 (334)
+..+.+.+.+++.+.|+....- ...|..+|.+++++++++.+++
T Consensus 268 ~s~iflPpTlIagiyGMNf~~mPel~~~~Gy~~~l~~m~~~~~~~ 312 (322)
T COG0598 268 VSTIFLPPTLITGFYGMNFKGMPELDWPYGYPIALILMLLLALLL 312 (322)
T ss_pred HHHHHHhhHHHHcccccCCCCCcCCCCcccHHHHHHHHHHHHHHH
Confidence 3444444555555566666653 3456667766666666666664
No 194
>PF15110 TMEM141: TMEM141 protein family; PDB: 2LOR_A.
Probab=24.08 E-value=1.5e+02 Score=22.75 Aligned_cols=51 Identities=10% Similarity=0.077 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHhhhhccCCCcchhhHHHHHHHHHHHHHHHHHHHHh
Q 019892 265 WFGRLALFFASVNIVLGIQIGYAGNEWKIGYGFLLAVVLLAVIVLETLSWM 315 (334)
Q Consensus 265 ~~G~~~~~lg~~~i~~G~~~~~~~~~~~~~y~~~~~~~~~~~~~le~~~~~ 315 (334)
.-|.+.+++|....+.+=.+....-++..-+.++++.++.....-.+-+++
T Consensus 29 ~kG~~tFv~G~~~~f~~Q~~iqrrlpYp~q~~~LVS~v~~sv~sY~vT~~e 79 (94)
T PF15110_consen 29 MKGLFTFVLGTGATFFLQKAIQRRLPYPFQWNILVSVVVASVASYQVTRVE 79 (94)
T ss_dssp HHHHHHHHGGGGHHHHHHHHHHTTSSSSS-HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhCCCCCCchhHHHHHHhhhhhhhhhhHH
Confidence 458888888888888776666554444444445555544443333333333
No 195
>PF04247 SirB: Invasion gene expression up-regulator, SirB; InterPro: IPR007360 SirB up-regulates Salmonella typhimurium invasion gene transcription. It is, however, not essential for the expression of these genes. Its function is unknown [].
Probab=23.79 E-value=3.9e+02 Score=21.52 Aligned_cols=21 Identities=19% Similarity=0.077 Sum_probs=9.2
Q ss_pred ccchhHHHHHHHHHHHHHHHH
Q 019892 259 WNWYHHWFGRLALFFASVNIV 279 (334)
Q Consensus 259 ~~~~H~~~G~~~~~lg~~~i~ 279 (334)
.+......-.++++.|+.=+.
T Consensus 39 ~ki~pHiiDTlLL~sgi~L~~ 59 (123)
T PF04247_consen 39 VKILPHIIDTLLLLSGIGLMV 59 (123)
T ss_pred eeeehhHHHHHHHHHHHHHHH
Confidence 344444444444444443333
No 196
>COG2322 Predicted membrane protein [Function unknown]
Probab=23.78 E-value=4.7e+02 Score=22.49 Aligned_cols=28 Identities=14% Similarity=0.093 Sum_probs=23.1
Q ss_pred cchhHHHHHHHHHHHHHHHHHhhhhccC
Q 019892 260 NWYHHWFGRLALFFASVNIVLGIQIGYA 287 (334)
Q Consensus 260 ~~~H~~~G~~~~~lg~~~i~~G~~~~~~ 287 (334)
-..|..+..+...|+..++.+|.....+
T Consensus 119 L~~Hi~LA~i~vPLal~al~~a~~~~~~ 146 (177)
T COG2322 119 LITHIILAAINVPLALYALILAWKGLYE 146 (177)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHhcchhh
Confidence 3579999999999999999999877643
No 197
>cd00284 Cytochrome_b_N Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.
Probab=23.50 E-value=2.2e+02 Score=25.02 Aligned_cols=91 Identities=19% Similarity=0.231 Sum_probs=52.6
Q ss_pred hhhHHHHHHHHHHHHhhhhhhhhhccCC---------------CChh--hhhhhHHHHHHHHHHHHHHhheeeecccccc
Q 019892 157 KNHGALGMIGWGIILPVGAIIPRYFKHK---------------DPLW--YYLHAIIQLVGFIFGLATVLLGIQLYNKLNV 219 (334)
Q Consensus 157 ~~Hg~lm~~aw~~l~p~gil~aR~~k~~---------------~~~w--~~~H~~~q~~~~~~~i~g~~l~~~~~~~~~~ 219 (334)
..=|.+..+++.+..-.|++.+-|+.+. .--| ..+|..--..-++++.+=..=++. .+...+
T Consensus 23 ~~~G~ll~~~~~iqiiTGi~La~~Y~p~~~~A~~Sv~~i~~ev~~G~liR~~H~~gas~~~~~~~lH~~r~~~-~gsY~~ 101 (200)
T cd00284 23 WNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFLMLYLHIFRGLY-YGSYKK 101 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhcc
Confidence 3448888899999999999988776642 1123 345543221111111111111111 122211
Q ss_pred CCCCcccchhhhHHHHHHHHHHHHHhhcccCC
Q 019892 220 KNANISAHRGIGIFILVLSILQILAFFLRPSK 251 (334)
Q Consensus 220 ~~~~~~~H~~lG~~~~~l~~~Q~~~g~~r~~~ 251 (334)
....-=++|++++++.+.....|+.-|..
T Consensus 102 ---pre~~W~~G~~l~~l~~~~af~GY~Lpw~ 130 (200)
T cd00284 102 ---PRELTWVIGVILLLLTMATAFMGYVLPWG 130 (200)
T ss_pred ---hhHHHHHHHHHHHHHHHHHHHcccccCch
Confidence 23445689999999999999999887755
No 198
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=23.24 E-value=4.9e+02 Score=22.71 Aligned_cols=24 Identities=21% Similarity=0.290 Sum_probs=12.3
Q ss_pred chhHHHHHHHHHHHHHHHHHhhhh
Q 019892 261 WYHHWFGRLALFFASVNIVLGIQI 284 (334)
Q Consensus 261 ~~H~~~G~~~~~lg~~~i~~G~~~ 284 (334)
+...++--+++++|+.++..|+..
T Consensus 78 ~~~~~ld~~L~~~~if~~~~gi~~ 101 (206)
T PF06570_consen 78 PWLMALDNSLLFFGIFSLLFGIMG 101 (206)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555443
No 199
>TIGR02891 CtaD_CoxA cytochrome c oxidase, subunit I. These families, as well as archaeal and eukaryotic cytochrome c subunit I's are included within the superfamily model, pfam00115.
Probab=23.04 E-value=7.9e+02 Score=24.82 Aligned_cols=59 Identities=17% Similarity=0.254 Sum_probs=36.4
Q ss_pred ccchhhhhHHHHHHHHHHHHhhh--h-hhhhhccCC---CChhhhhhhHHHHHHHHHHHHHHhhe
Q 019892 152 SSREKKNHGALGMIGWGIILPVG--A-IIPRYFKHK---DPLWYYLHAIIQLVGFIFGLATVLLG 210 (334)
Q Consensus 152 ~~~~~~~Hg~lm~~aw~~l~p~g--i-l~aR~~k~~---~~~w~~~H~~~q~~~~~~~i~g~~l~ 210 (334)
..+.+..||..|...|..-+-.| . ++.|..+.. .|..-.+...+...+++++++++..+
T Consensus 49 y~~~~T~Hg~~mif~~~~p~~~g~~~~lvp~~lg~~dl~~prln~~sfwl~~~~~~l~~~s~~~g 113 (506)
T TIGR02891 49 YNQLFTMHGTIMIFLFAVPILAGFGNYLLPLMIGARDMAFPRLNAFSYWLYLFGGLLLLASFFTG 113 (506)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccchhHHHHHHHHHHHHHHHHHHHhccC
Confidence 67889999999997776543222 1 333444332 23334555666677777777776554
No 200
>PF11014 DUF2852: Protein of unknown function (DUF2852); InterPro: IPR021273 This bacterial family of proteins has no known function.
Probab=22.94 E-value=77 Score=25.41 Aligned_cols=21 Identities=24% Similarity=0.452 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHhhhhhhhhh
Q 019892 160 GALGMIGWGIILPVGAIIPRY 180 (334)
Q Consensus 160 g~lm~~aw~~l~p~gil~aR~ 180 (334)
..+|+++|+++-|+|..+.-|
T Consensus 12 Ia~mVlGFi~fWPlGla~Lay 32 (115)
T PF11014_consen 12 IAAMVLGFIVFWPLGLALLAY 32 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 578999999999999766644
No 201
>TIGR00780 ccoN cytochrome c oxidase, cbb3-type, subunit I. Gene symbols ccoN and fixN are synonymous.
Probab=22.80 E-value=6.6e+02 Score=25.30 Aligned_cols=82 Identities=10% Similarity=0.137 Sum_probs=55.1
Q ss_pred ccchhhhhHHHHHHHHHHHHhhhhh---hhhhccCC--CChhhhhhhHHHHHHHHHHHHHHhheeeeccccccCCCCccc
Q 019892 152 SSREKKNHGALGMIGWGIILPVGAI---IPRYFKHK--DPLWYYLHAIIQLVGFIFGLATVLLGIQLYNKLNVKNANISA 226 (334)
Q Consensus 152 ~~~~~~~Hg~lm~~aw~~l~p~gil---~aR~~k~~--~~~w~~~H~~~q~~~~~~~i~g~~l~~~~~~~~~~~~~~~~~ 226 (334)
-.+++.+|-=.++.+|+...-.|.. +.|-+|.. .+..-+++..+-.++.+++++++.++.....+. ...
T Consensus 50 fgr~R~~Htn~~i~~~~~~~~~g~~yy~~~r~~~~~l~~~~la~~~~~~~~~~~~~a~~~~~~G~~~g~eY------~e~ 123 (474)
T TIGR00780 50 FGRLRPLHTNAVIFAFGGGGLIATSYYVVQRTYHQRLFGGIVGLFHFWGWQILIVLAVISLFAGLTQSKEY------AEL 123 (474)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHHHHHHHHHhccCccCccc------ccc
Confidence 5677899999999999888877763 44666542 334456777777778888888888877443222 223
Q ss_pred chhhhHHHHHHHH
Q 019892 227 HRGIGIFILVLSI 239 (334)
Q Consensus 227 H~~lG~~~~~l~~ 239 (334)
--.+++.+++..+
T Consensus 124 ~~~~~~~i~v~~l 136 (474)
T TIGR00780 124 EWPLDIIVTVVWV 136 (474)
T ss_pred hHHHHHHHHHHHH
Confidence 4677777776433
No 202
>PF11239 DUF3040: Protein of unknown function (DUF3040); InterPro: IPR021401 Some members in this family of proteins with unknown function are annotated as membrane proteins however this cannot be confirmed.
Probab=22.56 E-value=2.8e+02 Score=20.42 Aligned_cols=28 Identities=14% Similarity=0.216 Sum_probs=22.2
Q ss_pred cchhHHHHHHHHHHHHHHHHHhhhhccC
Q 019892 260 NWYHHWFGRLALFFASVNIVLGIQIGYA 287 (334)
Q Consensus 260 ~~~H~~~G~~~~~lg~~~i~~G~~~~~~ 287 (334)
..-+...|.+.+++|++-+..|......
T Consensus 38 ~~r~~~~~~~~~v~gl~llv~G~~~~~~ 65 (82)
T PF11239_consen 38 SRRRRVLGVLLVVVGLALLVAGVVLSQP 65 (82)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3445589999999999999999887754
No 203
>KOG4663 consensus Cytochrome b [Energy production and conversion]
Probab=22.18 E-value=1.1e+02 Score=26.87 Aligned_cols=59 Identities=22% Similarity=0.294 Sum_probs=43.1
Q ss_pred CcccchhhhHHHHHHHHHHHHHhhcccCCCCCCcccccchhHHHHHHHHHHHHHHHHHhhhhcc
Q 019892 223 NISAHRGIGIFILVLSILQILAFFLRPSKDSKFRRFWNWYHHWFGRLALFFASVNIVLGIQIGY 286 (334)
Q Consensus 223 ~~~~H~~lG~~~~~l~~~Q~~~g~~r~~~~~~~r~~~~~~H~~~G~~~~~lg~~~i~~G~~~~~ 286 (334)
....|+.=.-..++.+.+...=|++.-+-+.++|..|+ .|.++++|-+++.++|..+.-
T Consensus 78 lR~~HanGAS~ffi~m~LHi~rglyygsy~~pr~~~Wn-----~Gvii~lLt~~tAflGYvl~w 136 (210)
T KOG4663|consen 78 LRYLHANGASFFFIVMYLHIFRGLYYGSYRSPRETVWN-----KGVIILLLTIVTAFLGYVLPW 136 (210)
T ss_pred EeehhhcCCcHHHHHHHHHHhhhheEeeecccchhhhh-----hhHHHHHHHHHHhHhcccCch
Confidence 34566654455556666777777765555566778888 899999999999999988753
No 204
>PF11297 DUF3098: Protein of unknown function (DUF3098); InterPro: IPR021448 This bacterial family of proteins has no known function.
Probab=22.15 E-value=3e+02 Score=19.97 Aligned_cols=22 Identities=14% Similarity=0.116 Sum_probs=16.4
Q ss_pred hhhHHHHHHHHHHHHHHhheee
Q 019892 191 LHAIIQLVGFIFGLATVLLGIQ 212 (334)
Q Consensus 191 ~H~~~q~~~~~~~i~g~~l~~~ 212 (334)
....+..+++++.++|+++.--
T Consensus 6 ~Nyill~iG~~vIilGfilMsg 27 (69)
T PF11297_consen 6 KNYILLAIGIAVIILGFILMSG 27 (69)
T ss_pred HHHHHHHHHHHHHHHHHHheeC
Confidence 3556778888888999888543
No 205
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]
Probab=22.12 E-value=4.8e+02 Score=26.16 Aligned_cols=15 Identities=20% Similarity=-0.013 Sum_probs=8.2
Q ss_pred cccchhHHHHHHHHH
Q 019892 258 FWNWYHHWFGRLALF 272 (334)
Q Consensus 258 ~~~~~H~~~G~~~~~ 272 (334)
+..+...+..+++++
T Consensus 399 fkm~~~p~~~~l~l~ 413 (462)
T COG1113 399 FKMPLYPFTNYLTLA 413 (462)
T ss_pred cccccccHHHHHHHH
Confidence 334566666665543
No 206
>KOG4841 consensus Dolichol-phosphate mannosyltransferase, subunit 3 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=21.56 E-value=2.5e+02 Score=21.27 Aligned_cols=29 Identities=17% Similarity=0.109 Sum_probs=22.9
Q ss_pred cchhHHHHHHHHHHHHHHHHHhhhhccCC
Q 019892 260 NWYHHWFGRLALFFASVNIVLGIQIGYAG 288 (334)
Q Consensus 260 ~~~H~~~G~~~~~lg~~~i~~G~~~~~~~ 288 (334)
+.+|+.+|+.+.+..++.+..|+.-.+.+
T Consensus 8 ~~ah~~~~~~V~l~~~~~vt~~l~~Leep 36 (95)
T KOG4841|consen 8 KLAHWLWGLAVLLSTWVAVTTGLLGLEEP 36 (95)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCccc
Confidence 46899999999999988888776655544
No 207
>PF02322 Cyto_ox_2: Cytochrome oxidase subunit II; InterPro: IPR003317 These proteins are cytochrome bd type terminal oxidases that catalyse quinol dependent, Na+ independent oxygen uptake []. Members of this family are integral membrane proteins and contain a protoheame IX centre B558. Cytochrome bd may play an important role in microaerobic nitrogen fixation in the enteric bacterium Klebsiella pneumoniae, where it is expressed under all conditions that permit diazotrophy []. ; GO: 0055114 oxidation-reduction process, 0016020 membrane
Probab=21.35 E-value=4.5e+02 Score=24.98 Aligned_cols=58 Identities=31% Similarity=0.477 Sum_probs=36.3
Q ss_pred hhhHHHHHHHHHHHHHhhcccCC-CCCCcccccchhHHHHHHH-HHH--HHHHHHHhhhhcc
Q 019892 229 GIGIFILVLSILQILAFFLRPSK-DSKFRRFWNWYHHWFGRLA-LFF--ASVNIVLGIQIGY 286 (334)
Q Consensus 229 ~lG~~~~~l~~~Q~~~g~~r~~~-~~~~r~~~~~~H~~~G~~~-~~l--g~~~i~~G~~~~~ 286 (334)
...+++++..++..+.--+|.+. +.+.|+.|+..-...+.+. +++ ...|+..|+....
T Consensus 83 lpl~liL~~li~RgvafefR~~~~~~~~r~~wd~~~~~gSll~~~~~G~~~g~~~~G~p~~~ 144 (328)
T PF02322_consen 83 LPLFLILLGLILRGVAFEFRHKADSPRWRRFWDWVFFIGSLLPPFLLGVALGNLVSGLPIDA 144 (328)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcccc
Confidence 44444555566677666788776 4567888887665555432 233 3558888877765
No 208
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=20.87 E-value=1.1e+02 Score=28.64 Aligned_cols=9 Identities=22% Similarity=0.704 Sum_probs=5.5
Q ss_pred HHHHhhhCC
Q 019892 311 TLSWMKKRS 319 (334)
Q Consensus 311 ~~~~~~~r~ 319 (334)
.+-|.+||.
T Consensus 278 LYiWlyrrR 286 (295)
T TIGR01478 278 LYIWLYRRR 286 (295)
T ss_pred HHHHHHHhh
Confidence 346877663
No 209
>PF06679 DUF1180: Protein of unknown function (DUF1180); InterPro: IPR009565 This entry consists of several hypothetical eukaryotic proteins thought to be membrane proteins. Their function is unknown.
Probab=20.61 E-value=1.3e+02 Score=25.64 Aligned_cols=9 Identities=22% Similarity=0.575 Sum_probs=5.5
Q ss_pred CCCcccCCC
Q 019892 325 PPTFQMNPV 333 (334)
Q Consensus 325 ~~~~~~~~~ 333 (334)
.|.-+|.|.
T Consensus 136 ~~~~Em~pL 144 (163)
T PF06679_consen 136 AENVEMAPL 144 (163)
T ss_pred cccceeccc
Confidence 356677764
No 210
>PTZ00370 STEVOR; Provisional
Probab=20.55 E-value=1.1e+02 Score=28.61 Aligned_cols=9 Identities=22% Similarity=0.704 Sum_probs=5.4
Q ss_pred HHHHhhhCC
Q 019892 311 TLSWMKKRS 319 (334)
Q Consensus 311 ~~~~~~~r~ 319 (334)
.+-|.+||.
T Consensus 274 lYiwlyrrR 282 (296)
T PTZ00370 274 LYIWLYRRR 282 (296)
T ss_pred HHHHHHHhh
Confidence 346777663
No 211
>PRK10582 cytochrome o ubiquinol oxidase subunit IV; Provisional
Probab=20.35 E-value=4.4e+02 Score=20.85 Aligned_cols=67 Identities=21% Similarity=0.222 Sum_probs=31.7
Q ss_pred hhhHHHHHHHHHHHHHHhheeeeccccccCCCCcccchhhhHHHHHHHHHHHHHh---hcccCCCCCCcccccchhHHHH
Q 019892 191 LHAIIQLVGFIFGLATVLLGIQLYNKLNVKNANISAHRGIGIFILVLSILQILAF---FLRPSKDSKFRRFWNWYHHWFG 267 (334)
Q Consensus 191 ~H~~~q~~~~~~~i~g~~l~~~~~~~~~~~~~~~~~H~~lG~~~~~l~~~Q~~~g---~~r~~~~~~~r~~~~~~H~~~G 267 (334)
-|..-.+++++++++.|.+... +..+ .- ..-.++++++++|.+.= |++-+ .+.+..||..--+++
T Consensus 17 ~yviGFiLSliLT~i~F~lv~~--~~~~-------~~-~~~~~i~~lA~vQi~VqL~~FLHl~--~~~~~~wn~~al~Ft 84 (109)
T PRK10582 17 TYMTGFILSIILTVIPFWMVMT--GAAS-------PA-VILGTILAMAVVQILVHLVCFLHMN--TKSDEGWNMTAFVFT 84 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--ccCC-------hh-HHHHHHHHHHHHHHHHHHHHHhccc--CCcccchHHHHHHHH
Confidence 3455555666677666665432 2211 11 22233445566777643 23322 223345665555544
Q ss_pred HH
Q 019892 268 RL 269 (334)
Q Consensus 268 ~~ 269 (334)
..
T Consensus 85 ~~ 86 (109)
T PRK10582 85 VL 86 (109)
T ss_pred HH
Confidence 44
No 212
>PRK03557 zinc transporter ZitB; Provisional
Probab=20.16 E-value=7.2e+02 Score=23.22 Aligned_cols=9 Identities=11% Similarity=-0.145 Sum_probs=3.7
Q ss_pred cchhhhHHH
Q 019892 226 AHRGIGIFI 234 (334)
Q Consensus 226 ~H~~lG~~~ 234 (334)
.|...-++.
T Consensus 52 ~hsl~D~~~ 60 (312)
T PRK03557 52 GHMLTDAAA 60 (312)
T ss_pred HHHHHHHHH
Confidence 344444333
No 213
>PRK12586 putative monovalent cation/H+ antiporter subunit G; Reviewed
Probab=20.14 E-value=2e+02 Score=24.06 Aligned_cols=47 Identities=19% Similarity=0.231 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHhhhhhhhhhccCCCChhhhhhhH--HHHHHHHHHHHHHhhee
Q 019892 161 ALGMIGWGIILPVGAIIPRYFKHKDPLWYYLHAI--IQLVGFIFGLATVLLGI 211 (334)
Q Consensus 161 ~lm~~aw~~l~p~gil~aR~~k~~~~~w~~~H~~--~q~~~~~~~i~g~~l~~ 211 (334)
+++.++=.+++-.++-+.|+ ....-++|.. .+.+|+.+.++|..+-+
T Consensus 14 ill~lG~~f~ligaIGllRf----PD~ytRlHAatKa~TlG~~liLlg~~l~~ 62 (145)
T PRK12586 14 IMILLGSIIALISAIGIVKF----QDVFLRSHAATKSSTLSVLLTLIGVLIYF 62 (145)
T ss_pred HHHHHHHHHHHHHHHHHHhC----CcHHHHccccccchhhHHHHHHHHHHHHH
Confidence 44444444444333334453 2345689985 56678888888877743
No 214
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter. Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009
Probab=20.10 E-value=8.9e+02 Score=24.30 Aligned_cols=22 Identities=0% Similarity=-0.372 Sum_probs=10.0
Q ss_pred hhHHHHHHHHHHHHHHHHHhhh
Q 019892 262 YHHWFGRLALFFASVNIVLGIQ 283 (334)
Q Consensus 262 ~H~~~G~~~~~lg~~~i~~G~~ 283 (334)
...+.+.++-+++.+-+..++.
T Consensus 400 g~~~~~~i~~~~~~~~~~~~~v 421 (507)
T TIGR00910 400 GGIGGKLIIAGIGFLLSIFAFF 421 (507)
T ss_pred CCccchhhHHHHHHHHHHHHHh
Confidence 4444344454555444444433
Done!