Query 019892
Match_columns 334
No_of_seqs 171 out of 1097
Neff 7.9
Searched_HMMs 29240
Date Mon Mar 25 08:40:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019892.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019892hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1d7b_A Cellobiose dehydrogenas 99.7 4.2E-16 1.4E-20 134.6 13.7 136 5-146 22-178 (186)
2 1kqf_C FDH-N gamma, formate de 84.6 2.1 7.1E-05 36.7 6.8 96 190-286 16-136 (217)
3 4gd3_A NI/Fe-hydrogenase 1 B-t 83.9 3 0.0001 36.2 7.6 58 190-247 20-83 (235)
4 2ks1_B Epidermal growth factor 68.1 9.6 0.00033 24.1 4.5 26 293-318 13-38 (44)
5 2jwa_A Receptor tyrosine-prote 68.0 6.6 0.00023 24.9 3.7 25 297-321 17-41 (44)
6 2l2t_A Receptor tyrosine-prote 63.5 18 0.00062 22.8 5.1 29 293-321 12-41 (44)
7 1vf5_A Cytochrome B6; photosyn 57.4 46 0.0016 28.5 8.4 84 200-288 45-142 (215)
8 1vf5_A Cytochrome B6; photosyn 39.9 1.2E+02 0.0041 25.9 8.2 90 158-251 35-141 (215)
9 2qjy_A Cytochrome B; cytochrom 39.2 1.1E+02 0.0037 29.2 8.6 84 200-288 56-153 (445)
10 4gd3_A NI/Fe-hydrogenase 1 B-t 38.8 1.8E+02 0.0061 24.6 10.8 56 153-209 16-80 (235)
11 3cx5_C Cytochrome B-C1 complex 36.6 1.3E+02 0.0045 28.0 8.6 83 201-288 42-138 (385)
12 2l8s_A Integrin alpha-1; trans 33.2 96 0.0033 20.4 5.0 34 290-323 9-43 (54)
13 1pp9_C Cytochrome B; cytochrom 33.0 1.1E+02 0.0039 28.4 7.5 80 202-288 44-137 (379)
14 4ev6_A Magnesium transport pro 28.7 69 0.0024 29.0 5.3 40 269-308 288-328 (339)
15 2k21_A Potassium voltage-gated 28.1 1.2E+02 0.0041 23.7 5.6 40 291-330 51-92 (138)
16 2klu_A T-cell surface glycopro 24.2 83 0.0028 21.6 3.5 15 293-307 12-26 (70)
17 4djk_A Probable glutamate/gamm 23.1 3E+02 0.01 25.7 8.9 9 268-276 413-421 (511)
18 4gmn_B 60S ribosomal protein L 22.5 26 0.0009 22.3 0.7 12 312-323 18-29 (49)
19 2qjy_A Cytochrome B; cytochrom 21.9 2.1E+02 0.0073 27.1 7.3 89 159-251 47-152 (445)
20 2nr1_A NR1 M2, M2; receptor, s 21.7 59 0.002 18.1 2.0 16 160-175 10-25 (27)
21 3l1l_A Arginine/agmatine antip 21.0 4.7E+02 0.016 23.7 10.0 11 262-272 386-396 (445)
No 1
>1d7b_A Cellobiose dehydrogenase; B-type cytochrome, Met/His ligation, beta sandwich, Fe(II)- protoporphyrin IX, oxidoreductase; HET: NAG BMA HEM 1PG; 1.90A {Phanerochaete chrysosporium} SCOP: b.1.9.1 PDB: 1d7d_A* 1d7c_A* 1pl3_A*
Probab=99.68 E-value=4.2e-16 Score=134.61 Aligned_cols=136 Identities=15% Similarity=0.209 Sum_probs=104.0
Q ss_pred ccceEEEEEeC-------CCcEEEEEEEEcCCCcEEEEEECCCCCCCCCcEEEEEEcCCCCeEEEEEEeecccccccccC
Q 019892 5 NQHSLLQYAQR-------DDHVMTIILSAIYTTGWVGMGFSKDGMMAGSSAMVGWFNKKGQPRIKQYYLQGTRSSQVIHD 77 (334)
Q Consensus 5 ~~~~~l~W~~~-------~~~~i~f~l~a~~~~gWvaiGfs~~~~M~gsd~vI~~~~~~G~~~v~~~~~~g~~~p~v~~~ 77 (334)
..++.+.|..+ +.++++|+|++|.+.||+|||++ ++|.|++|+|+|+++ |++++++|+.+||.+|++...
T Consensus 22 ~~~~~f~~alP~~~~s~~~s~d~~~qi~~p~~~gW~g~g~G--g~M~gs~l~v~w~~~-~~v~~S~R~a~g~~~P~~y~~ 98 (186)
T 1d7b_A 22 VHDVTYGFVFPPLATSGAQSTEFIGEVVAPIASKWIGIALG--GAMNNDLLLVAWANG-NQIVSSTRWATGYVQPTAYTG 98 (186)
T ss_dssp TTTEEEEEEBCCCCSSSCCCCCEEEEEEEETTCCEEEEETT--SSSSSSCEEEEEEET-TEEEEEEEECSSSSCCEECCS
T ss_pred CCCEEEEEECCCcccCCCCCccEEEEEEccCCCCEEEEecC--CCCCCCcEEEEEeCC-CEEEEEEEEecCccCCCccCC
Confidence 45677777742 12579999999978899999996 599999999999975 889999999999999984333
Q ss_pred CCCccccCCCceEEEeCcEEEEEEEEe----c-CC----CCCcccEEEccCCCCCC-----CCCcccccCCCceeEeecC
Q 019892 78 KGELPLTNVPPVVAIHGAMIYMAFQLK----F-EN----HLRQQPIILAFGSRYPK-----HFHLTHHVDKRTIMFDFSG 143 (334)
Q Consensus 78 ~~~l~~~~~~~~~~~~~g~~~~~F~r~----~-~~----~~~~~~~IwA~G~~~~~-----~~~l~~H~~~g~~~ldL~~ 143 (334)
+-+++++.++ .++++++++.|+++ . .. ......++||+++..|. +..+.+|+.+|.+++||..
T Consensus 99 ~~~~~lL~gs---~vn~t~~~~~f~C~~C~~w~~~g~~~~ts~~~~iwA~~~~~p~~~~~~~a~~~~H~~~G~~~~dL~~ 175 (186)
T 1d7b_A 99 TATLTTLPET---TINSTHWKWVFRCQGCTEWNNGGGIDVTSQGVLAWAFSNVAVDDPSDPQSTFSEHTDFGFFGIDYST 175 (186)
T ss_dssp SCEEEECTTC---EECSSEEEEEEEEETTTBCTTSCBCCTTSEEEEEEEEESSCCSCTTCTTCCCCCCSEEEEEEEEGGG
T ss_pred CceEEEcccc---cEeCCEEEEEEEeCCCcccCCCCccccCCCCeEEEEECCCCCCCCCCCcccchhhhCcceEEEEccc
Confidence 3346666553 47889999999885 1 10 11223899999876432 4689999999999999996
Q ss_pred CCc
Q 019892 144 GSS 146 (334)
Q Consensus 144 g~~ 146 (334)
+..
T Consensus 176 a~~ 178 (186)
T 1d7b_A 176 AHS 178 (186)
T ss_dssp CBC
T ss_pred ccc
Confidence 543
No 2
>1kqf_C FDH-N gamma, formate dehydrogenase, nitrate-inducible, cytochr B556(FDN) subunit; oxidoreductase, selenium, selenocysteine, seCys, molybdenum; HET: MGD HEM CDL; 1.60A {Escherichia coli} SCOP: f.21.1.1 PDB: 1kqg_C*
Probab=84.61 E-value=2.1 Score=36.68 Aligned_cols=96 Identities=17% Similarity=0.138 Sum_probs=54.4
Q ss_pred hhhhHHHHHHHHHHHHHHhheeeecc---c-cccCCCCcccchhhhHHHHHHHHHHHHHhhcc---cCCCC---------
Q 019892 190 YLHAIIQLVGFIFGLATVLLGIQLYN---K-LNVKNANISAHRGIGIFILVLSILQILAFFLR---PSKDS--------- 253 (334)
Q Consensus 190 ~~H~~~q~~~~~~~i~g~~l~~~~~~---~-~~~~~~~~~~H~~lG~~~~~l~~~Q~~~g~~r---~~~~~--------- 253 (334)
-+|+..-++-+++.+.|+.+.+-... + .+........|..+|+++++++++-.+ .+.| |.+..
T Consensus 16 ~~HW~~a~~ii~l~~tG~~i~~p~~~~l~~~~g~~~~~~~~H~~~G~~~~~l~~~r~~-r~~r~~~p~~~~~~~~~~~~~ 94 (217)
T 1kqf_C 16 ACHWTVVICFFLVALSGISFFFPTLQWLTQTFGTPQMGRILHPFFGIAIFVALMFMFV-RFVHHNIPDKKDIPWLLNIVE 94 (217)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCTTCGGGGGTTSSHHHHHHHHHHHHHHHHHHHHHHHH-HHGGGSCCCGGGHHHHHSHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHchhHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHH-HHHHHhCCChhHHHHHHHHHH
Confidence 45666555555555566654321000 0 000001346799999888887776443 2222 22110
Q ss_pred ---------CCcccccchhHHHHHHHHHHHHHHHHHhhhhcc
Q 019892 254 ---------KFRRFWNWYHHWFGRLALFFASVNIVLGIQIGY 286 (334)
Q Consensus 254 ---------~~r~~~~~~H~~~G~~~~~lg~~~i~~G~~~~~ 286 (334)
+....+|...+..=.+++++..+.+.+|+.+..
T Consensus 95 yl~~~~~~~p~~~~~n~~~~~~~~~l~~l~~~~~~TG~~~~~ 136 (217)
T 1kqf_C 95 VLKGNEHKVADVGKYNAGQKMMFWSIMSMIFVLLVTGVIIWR 136 (217)
T ss_dssp HHTTCHHHHCCCCSSCHHHHHHHHHHHHHHHHHHHHHHHTCT
T ss_pred HHcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 112346677777778888889999999998875
No 3
>4gd3_A NI/Fe-hydrogenase 1 B-type cytochrome subunit; O2-tolerant H2:quinone oxidoreductase, membrane-bound, NI-Fe hydrogenase-cytochrome B complex; HET: LMT HEM; 3.30A {Escherichia coli}
Probab=83.87 E-value=3 Score=36.23 Aligned_cols=58 Identities=16% Similarity=0.162 Sum_probs=34.0
Q ss_pred hhhhHHHHHHHHHHHHHHhheeeec---cccccC---CCCcccchhhhHHHHHHHHHHHHHhhc
Q 019892 190 YLHAIIQLVGFIFGLATVLLGIQLY---NKLNVK---NANISAHRGIGIFILVLSILQILAFFL 247 (334)
Q Consensus 190 ~~H~~~q~~~~~~~i~g~~l~~~~~---~~~~~~---~~~~~~H~~lG~~~~~l~~~Q~~~g~~ 247 (334)
-+|+..-++-+++.+.|+.+..... ++.... ......|..+|+++++++++-.+.++.
T Consensus 20 ~~HW~~a~~ii~l~~tG~~~~~~~~~~~g~~~~~~~~~~~~~~H~~~G~~~~~l~~~Rl~w~~~ 83 (235)
T 4gd3_A 20 IWHWLTVLCMAVLMVTGYFIGKPLPSVSGEATYLFYMGYIRLIHFSAGMVFTVVLLMRIYWAFV 83 (235)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCCCCCCSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHhcCccccccCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677665555555556665543211 110000 001247999999999999998888765
No 4
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=68.11 E-value=9.6 Score=24.13 Aligned_cols=26 Identities=35% Similarity=0.535 Sum_probs=12.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhC
Q 019892 293 IGYGFLLAVVLLAVIVLETLSWMKKR 318 (334)
Q Consensus 293 ~~y~~~~~~~~~~~~~le~~~~~~~r 318 (334)
|+-+++.++.+++.+.+-+.-+.+||
T Consensus 13 IA~gVVgGv~~~~ii~~~~~~~~RRr 38 (44)
T 2ks1_B 13 IATGMVGALLLLLVVALGIGLFMRRR 38 (44)
T ss_dssp STHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred EEeehhHHHHHHHHHHHHHHHHhhhh
Confidence 44455554555444444444444433
No 5
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=67.97 E-value=6.6 Score=24.89 Aligned_cols=25 Identities=20% Similarity=0.317 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhCCCC
Q 019892 297 FLLAVVLLAVIVLETLSWMKKRSDK 321 (334)
Q Consensus 297 ~~~~~~~~~~~~le~~~~~~~r~~~ 321 (334)
+++++++++.+.+-+.-|.|||+-+
T Consensus 17 ~vVGvll~vi~~l~~~~~~RRR~~~ 41 (44)
T 2jwa_A 17 AVVGILLVVVLGVVFGILIKRRQQK 41 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCSC
T ss_pred HHHHHHHHHHHHHHHHhheehhhhh
Confidence 3444444444455455566666433
No 6
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=63.45 E-value=18 Score=22.85 Aligned_cols=29 Identities=21% Similarity=0.259 Sum_probs=12.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHH-HhhhCCCC
Q 019892 293 IGYGFLLAVVLLAVIVLETLS-WMKKRSDK 321 (334)
Q Consensus 293 ~~y~~~~~~~~~~~~~le~~~-~~~~r~~~ 321 (334)
++=+++.++.+++.+.+-+.- ||+||+.+
T Consensus 12 IA~gVVgGv~~v~ii~~~~~~~~RRRr~~~ 41 (44)
T 2l2t_A 12 IAAGVIGGLFILVIVGLTFAVYVRRKSIKK 41 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCSSC
T ss_pred EEEeehHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 444444444444444444333 44444333
No 7
>1vf5_A Cytochrome B6; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: f.21.1.2 PDB: 2d2c_A* 2e74_A* 2e75_A* 2e76_A* 2zt9_A* 1q90_B*
Probab=57.37 E-value=46 Score=28.49 Aligned_cols=84 Identities=12% Similarity=0.056 Sum_probs=53.5
Q ss_pred HHHHHHHHhheeeecccccc----------C----CCCcccchhhhHHHHHHHHHHHHHhhcccCCCCCCcccccchhHH
Q 019892 200 FIFGLATVLLGIQLYNKLNV----------K----NANISAHRGIGIFILVLSILQILAFFLRPSKDSKFRRFWNWYHHW 265 (334)
Q Consensus 200 ~~~~i~g~~l~~~~~~~~~~----------~----~~~~~~H~~lG~~~~~l~~~Q~~~g~~r~~~~~~~r~~~~~~H~~ 265 (334)
++-.+.|+.+++.+..+... + .-....|+.=.-..++++.+...-|++...=+.++ ..=+.
T Consensus 45 ~iqi~TG~~Lam~Y~p~~~~Af~Sv~~I~~dv~~GwliR~~H~~gAs~ffi~~ylHi~Rglyygsy~~p~-----~~~W~ 119 (215)
T 1vf5_A 45 LIQFATGFAMTFYYKPTVTEAYASVQYIMNEVSFGWLIRSIHRWSASMMVLMMILHVFRVYLTGGFKKPR-----ELTWI 119 (215)
T ss_dssp HHHHHHHHHHTTTCCCSTTTHHHHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSSSC-----SHHHH
T ss_pred HHHHHHHHHHHhHhcCChhHHHHHHHHHHhhcccchhhccchHHHHHHHHHHHHHHHHHHHHhhhcccCC-----CceeH
Confidence 33455788887754432110 0 11345688777777778888887777653222221 23367
Q ss_pred HHHHHHHHHHHHHHHhhhhccCC
Q 019892 266 FGRLALFFASVNIVLGIQIGYAG 288 (334)
Q Consensus 266 ~G~~~~~lg~~~i~~G~~~~~~~ 288 (334)
.|.+++++.+++.++|..+.-..
T Consensus 120 ~Gv~l~~l~m~~aF~GYvLPwgq 142 (215)
T 1vf5_A 120 SGVILAVITVSFGVTGYSLPWDQ 142 (215)
T ss_dssp HHHHHHHHHHHHHHHHTTTTCBH
T ss_pred hHHHHHHHHHHHHHcccccCCCc
Confidence 99999999999999998887543
No 8
>1vf5_A Cytochrome B6; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: f.21.1.2 PDB: 2d2c_A* 2e74_A* 2e75_A* 2e76_A* 2zt9_A* 1q90_B*
Probab=39.90 E-value=1.2e+02 Score=25.89 Aligned_cols=90 Identities=12% Similarity=0.125 Sum_probs=53.1
Q ss_pred hhHHHHHHHHHHHHhhhhhhhhhccCC---------------CChh--hhhhhHHHHHHHHHHHHHHhheeeeccccccC
Q 019892 158 NHGALGMIGWGIILPVGAIIPRYFKHK---------------DPLW--YYLHAIIQLVGFIFGLATVLLGIQLYNKLNVK 220 (334)
Q Consensus 158 ~Hg~lm~~aw~~l~p~gil~aR~~k~~---------------~~~w--~~~H~~~q~~~~~~~i~g~~l~~~~~~~~~~~ 220 (334)
.=|.+..+++.+..-.|++.+=++.+. .--| ..+|..--..-++|..+=+.=++.. +....
T Consensus 35 ~fGsll~~~l~iqi~TG~~Lam~Y~p~~~~Af~Sv~~I~~dv~~GwliR~~H~~gAs~ffi~~ylHi~Rglyy-gsy~~- 112 (215)
T 1vf5_A 35 CLGGITLTCFLIQFATGFAMTFYYKPTVTEAYASVQYIMNEVSFGWLIRSIHRWSASMMVLMMILHVFRVYLT-GGFKK- 112 (215)
T ss_dssp GHHHHHHHHHHHHHHHHHHHTTTCCCSTTTHHHHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TSSSS-
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHhcCChhHHHHHHHHHHhhcccchhhccchHHHHHHHHHHHHHHHHHHHHh-hhccc-
Confidence 359999999999999999888665542 1234 2455543222222222211112221 22111
Q ss_pred CCCcccchhhhHHHHHHHHHHHHHhhcccCC
Q 019892 221 NANISAHRGIGIFILVLSILQILAFFLRPSK 251 (334)
Q Consensus 221 ~~~~~~H~~lG~~~~~l~~~Q~~~g~~r~~~ 251 (334)
....==.+|++++++.......|+.-|..
T Consensus 113 --p~~~~W~~Gv~l~~l~m~~aF~GYvLPwg 141 (215)
T 1vf5_A 113 --PRELTWISGVILAVITVSFGVTGYSLPWD 141 (215)
T ss_dssp --SCSHHHHHHHHHHHHHHHHHHHHTTTTCB
T ss_pred --CCCceeHhHHHHHHHHHHHHHcccccCCC
Confidence 22333579999999999999999988765
No 9
>2qjy_A Cytochrome B; cytochrome B, 8 TM helixces cytochrome C1, 1 C-TERM TM helix 1 N-TERM TM helix; HET: BGL HEM SMA LOP UQ2; 2.40A {Rhodobacter sphaeroides} PDB: 2fyn_A* 2qjk_A* 2qjp_A* 1zrt_C* 2yiu_A*
Probab=39.22 E-value=1.1e+02 Score=29.19 Aligned_cols=84 Identities=10% Similarity=0.077 Sum_probs=53.9
Q ss_pred HHHHHHHHhheeeecccccc----------C----CCCcccchhhhHHHHHHHHHHHHHhhcccCCCCCCcccccchhHH
Q 019892 200 FIFGLATVLLGIQLYNKLNV----------K----NANISAHRGIGIFILVLSILQILAFFLRPSKDSKFRRFWNWYHHW 265 (334)
Q Consensus 200 ~~~~i~g~~l~~~~~~~~~~----------~----~~~~~~H~~lG~~~~~l~~~Q~~~g~~r~~~~~~~r~~~~~~H~~ 265 (334)
++..+.|+.+++.+..+... + .-.+..|+.=.-..++++.+-..-|++...=+.++ ..=|.
T Consensus 56 ~iQilTGifLam~Y~p~~~~Af~Sv~~I~rdV~~GwliR~~H~~gAs~ffi~iylHi~RglyygsY~~Pr-----~~~W~ 130 (445)
T 2qjy_A 56 VLQIVTGIVLAMHYTPHVDLAFASVEHIMRNVNGGFMLRYLHANGASLFFIAVYLHIFRGLYYGSYKAPR-----EVTWI 130 (445)
T ss_dssp HHHHHHHHHHHTTCCCSTTTHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSTTC-----HHHHH
T ss_pred HHHHHHHHHHHeeccCCcHHHHHHHHHHHhhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCc-----cceee
Confidence 33445788888765433210 0 11346788766666677777777776653221112 23467
Q ss_pred HHHHHHHHHHHHHHHhhhhccCC
Q 019892 266 FGRLALFFASVNIVLGIQIGYAG 288 (334)
Q Consensus 266 ~G~~~~~lg~~~i~~G~~~~~~~ 288 (334)
.|.+++++.+++.++|..+.-..
T Consensus 131 ~Gv~l~ll~m~taF~GYvLPwgQ 153 (445)
T 2qjy_A 131 VGMLIYLAMMATAFMGYVLPWGQ 153 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCBH
T ss_pred ehHHHHHHHHHHHHHheeccCCc
Confidence 99999999999999999998654
No 10
>4gd3_A NI/Fe-hydrogenase 1 B-type cytochrome subunit; O2-tolerant H2:quinone oxidoreductase, membrane-bound, NI-Fe hydrogenase-cytochrome B complex; HET: LMT HEM; 3.30A {Escherichia coli}
Probab=38.83 E-value=1.8e+02 Score=24.60 Aligned_cols=56 Identities=13% Similarity=0.144 Sum_probs=31.1
Q ss_pred cchhhhhHHHHHHHHHHHHhhhhhhhhhccC--CCC------hh-hhhhhHHHHHHHHHHHHHHhh
Q 019892 153 SREKKNHGALGMIGWGIILPVGAIIPRYFKH--KDP------LW-YYLHAIIQLVGFIFGLATVLL 209 (334)
Q Consensus 153 ~~~~~~Hg~lm~~aw~~l~p~gil~aR~~k~--~~~------~w-~~~H~~~q~~~~~~~i~g~~l 209 (334)
...+..| +++++++.+++..|..+...... ..+ .| ..+|..+-.+-++++++=++.
T Consensus 16 ~~~R~~H-W~~a~~ii~l~~tG~~~~~~~~~~~g~~~~~~~~~~~~~~H~~~G~~~~~l~~~Rl~w 80 (235)
T 4gd3_A 16 APVRIWH-WLTVLCMAVLMVTGYFIGKPLPSVSGEATYLFYMGYIRLIHFSAGMVFTVVLLMRIYW 80 (235)
T ss_dssp CCTTHHH-HHHHHHHHHHHHHHHHHHSCCCCCCSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHH-HHHHHHHHHHHHHHHHhcCccccccCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566 67888888888888655422110 111 11 247988876655555443333
No 11
>3cx5_C Cytochrome B-C1 complex subunit 8; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: f.32.1.1 f.21.1.2 PDB: 3cxh_C* 1ezv_C* 1kb9_C* 1kyo_C* 1p84_C* 2ibz_C*
Probab=36.58 E-value=1.3e+02 Score=28.01 Aligned_cols=83 Identities=11% Similarity=0.102 Sum_probs=51.7
Q ss_pred HHHHHHHhheeeecccccc----------C----CCCcccchhhhHHHHHHHHHHHHHhhcccCCCCCCcccccchhHHH
Q 019892 201 IFGLATVLLGIQLYNKLNV----------K----NANISAHRGIGIFILVLSILQILAFFLRPSKDSKFRRFWNWYHHWF 266 (334)
Q Consensus 201 ~~~i~g~~l~~~~~~~~~~----------~----~~~~~~H~~lG~~~~~l~~~Q~~~g~~r~~~~~~~r~~~~~~H~~~ 266 (334)
+..+.|+.+++.+..+... + .-.+..|+.=.-..++++.+-..-|++...=+.++ ..=|..
T Consensus 42 iqi~TGifLam~Y~p~~~~Af~Sv~~I~~dV~~GwliR~~H~~gAs~ffi~iylHi~Rglyygsy~~Pr-----~~~W~~ 116 (385)
T 3cx5_C 42 IQIVTGIFMAMHYSSNIELAFSSVEHIMRDVHNGYILRYLHANGASFFFMVMFMHMAKGLYYGSYRSPR-----VTLWNV 116 (385)
T ss_dssp HHHHHHHHHHTTCCCSTTTHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSTTC-----HHHHHH
T ss_pred HHHHHHHHHHeeeeCCchHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCC-----cceeee
Confidence 3445788887765433210 0 01345677766666777777777676653221112 234668
Q ss_pred HHHHHHHHHHHHHHhhhhccCC
Q 019892 267 GRLALFFASVNIVLGIQIGYAG 288 (334)
Q Consensus 267 G~~~~~lg~~~i~~G~~~~~~~ 288 (334)
|.+++++.+++.++|..+.-..
T Consensus 117 Gv~l~ll~m~~aF~GYvLPwgQ 138 (385)
T 3cx5_C 117 GVIIFILTIATAFLGYCCVYGQ 138 (385)
T ss_dssp HHHHHHHHHHHHHHHHHHHCBH
T ss_pred cHHHHHHHHHHHHHhhhccCCc
Confidence 9999999999999998887543
No 12
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=33.21 E-value=96 Score=20.39 Aligned_cols=34 Identities=24% Similarity=0.281 Sum_probs=17.5
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHhh-hCCCCCC
Q 019892 290 EWKIGYGFLLAVVLLAVIVLETLSWMK-KRSDKTT 323 (334)
Q Consensus 290 ~~~~~y~~~~~~~~~~~~~le~~~~~~-~r~~~~~ 323 (334)
.|++.-+++.++++++.+++-..++-= +|++++.
T Consensus 9 ~WiIi~svl~GLLLL~Lii~~LwK~GFFKR~~~~~ 43 (54)
T 2l8s_A 9 LWVILLSAFAGLLLLMLLILALWKIGFFKRPLKKK 43 (54)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCSCC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHcCcccCCCcch
Confidence 366666666666666555543443222 4544433
No 13
>1pp9_C Cytochrome B; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: f.32.1.1 f.21.1.2 PDB: 1bgy_C* 1be3_C* 1l0n_C* 1ntk_C* 1ntm_C* 1ntz_C* 1nu1_C* 1l0l_C* 1ppj_C* 1sqb_C* 1sqp_C* 1sqq_C* 1sqv_C* 1sqx_C* 2a06_C* 2fyu_C* 2ybb_C* 1qcr_C* 3l70_C* 2bcc_C* ...
Probab=33.03 E-value=1.1e+02 Score=28.41 Aligned_cols=80 Identities=10% Similarity=0.071 Sum_probs=48.8
Q ss_pred HHHHHHhheeeecccccc----------C----CCCcccchhhhHHHHHHHHHHHHHhhcccCCCCCCcccccchhHHHH
Q 019892 202 FGLATVLLGIQLYNKLNV----------K----NANISAHRGIGIFILVLSILQILAFFLRPSKDSKFRRFWNWYHHWFG 267 (334)
Q Consensus 202 ~~i~g~~l~~~~~~~~~~----------~----~~~~~~H~~lG~~~~~l~~~Q~~~g~~r~~~~~~~r~~~~~~H~~~G 267 (334)
..+.|+.+++....+... + .-.+..|+.=.-..++++.+-..-|++...=+ +++ =|..|
T Consensus 44 qi~TGi~Lam~Y~p~~~~Af~Sv~~I~~dV~~GwliR~~H~~gAs~ffi~~ylHi~Rglyygsy~--~~~-----~W~~G 116 (379)
T 1pp9_C 44 QILTGLFLAMHYTSDTTTAFSSVTHICRDVNYGWIIRYMHANGASMFFICLYMHVGRGLYYGSYT--FLE-----TWNIG 116 (379)
T ss_dssp HHHHHHHHHTTCCCCTTTHHHHHHHHHHHSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTGGG--SHH-----HHHHH
T ss_pred HHHHHHHHheeeeCCchHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHheec--Ccc-----eehhh
Confidence 445688777665433210 0 01345677755555666666666666542211 111 46799
Q ss_pred HHHHHHHHHHHHHhhhhccCC
Q 019892 268 RLALFFASVNIVLGIQIGYAG 288 (334)
Q Consensus 268 ~~~~~lg~~~i~~G~~~~~~~ 288 (334)
.+++++..++.++|..+.-..
T Consensus 117 v~l~ll~m~~aF~GYvLPwgQ 137 (379)
T 1pp9_C 117 VILLLTVMATAFMGYVLPWGQ 137 (379)
T ss_dssp HHHHHHHHHHHHHHHHTTCBH
T ss_pred HHHHHHHHHHHheeeeccCcc
Confidence 999999999999999887543
No 14
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=28.69 E-value=69 Score=29.01 Aligned_cols=40 Identities=10% Similarity=0.279 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHhhhhccC-CCcchhhHHHHHHHHHHHHHH
Q 019892 269 LALFFASVNIVLGIQIGYA-GNEWKIGYGFLLAVVLLAVIV 308 (334)
Q Consensus 269 ~~~~lg~~~i~~G~~~~~~-~~~~~~~y~~~~~~~~~~~~~ 308 (334)
+.+.+..++.+.|+...+- ...|..+|.+++++++++.++
T Consensus 288 IflP~T~IaGiyGMNf~~mPel~~~~gy~~~l~~m~~~~~~ 328 (339)
T 4ev6_A 288 IFAVPMWITGIYGMNFSYLPLANNPQGFWLVMALMVVIIMI 328 (339)
T ss_dssp HSSHHHHHHHHTTCCCSCCTTSSCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhccCcCCCCCCccCchHHHHHHHHHHHHHHH
Confidence 3344566666677776543 345666666666665555554
No 15
>2k21_A Potassium voltage-gated channel subfamily E member; KCNE1, membrane protein, potassium channel, MINK, auxilliary subunit, micelles, ION transport; NMR {Homo sapiens}
Probab=28.14 E-value=1.2e+02 Score=23.67 Aligned_cols=40 Identities=10% Similarity=0.047 Sum_probs=21.6
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHhh--hCCCCCCCCCCccc
Q 019892 291 WKIGYGFLLAVVLLAVIVLETLSWMK--KRSDKTTAPPTFQM 330 (334)
Q Consensus 291 ~~~~y~~~~~~~~~~~~~le~~~~~~--~r~~~~~~~~~~~~ 330 (334)
..++|.+++..++.++++--++++.| ||++|.+.-+.|..
T Consensus 51 ~~ylYIL~vmgffgff~~GImLsYiRSKk~E~s~DPy~~YIe 92 (138)
T 2k21_A 51 LEALYVLMVLGFFGFFTLGIMLSYIRSKKLEHSNDPFNVYIE 92 (138)
T ss_dssp STTCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCTTTTTSC
T ss_pred ceeehHHHHHHHHHHHHHHHHHHHhHhhhccccCCcHHHHHH
Confidence 44566655544444444433445444 44777776677643
No 16
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=24.15 E-value=83 Score=21.62 Aligned_cols=15 Identities=20% Similarity=0.257 Sum_probs=7.1
Q ss_pred hhHHHHHHHHHHHHH
Q 019892 293 IGYGFLLAVVLLAVI 307 (334)
Q Consensus 293 ~~y~~~~~~~~~~~~ 307 (334)
++.|..+++++++.+
T Consensus 12 ivlGg~~~lll~~gl 26 (70)
T 2klu_A 12 IVLGGVAGLLLFIGL 26 (70)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHH
Confidence 345555555444433
No 17
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=23.14 E-value=3e+02 Score=25.65 Aligned_cols=9 Identities=0% Similarity=-0.005 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q 019892 268 RLALFFASV 276 (334)
Q Consensus 268 ~~~~~lg~~ 276 (334)
+.+-+++.+
T Consensus 413 ~~~~~~~~~ 421 (511)
T 4djk_A 413 LVVAIVGLL 421 (511)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 18
>4gmn_B 60S ribosomal protein L5-like protein; ARM, heat, solenoid, linear motif, nuclear transport, chaper ribosome assembly, RPL11, KAP104; 2.95A {Chaetomium thermophilum}
Probab=22.54 E-value=26 Score=22.31 Aligned_cols=12 Identities=25% Similarity=0.476 Sum_probs=9.7
Q ss_pred HHHhhhCCCCCC
Q 019892 312 LSWMKKRSDKTT 323 (334)
Q Consensus 312 ~~~~~~r~~~~~ 323 (334)
.++++|||+||+
T Consensus 18 vkfRRRREGKTD 29 (49)
T 4gmn_B 18 TKFKRRRQGKTD 29 (49)
T ss_pred hHHhhhhcccch
Confidence 368999999975
No 19
>2qjy_A Cytochrome B; cytochrome B, 8 TM helixces cytochrome C1, 1 C-TERM TM helix 1 N-TERM TM helix; HET: BGL HEM SMA LOP UQ2; 2.40A {Rhodobacter sphaeroides} PDB: 2fyn_A* 2qjk_A* 2qjp_A* 1zrt_C* 2yiu_A*
Probab=21.94 E-value=2.1e+02 Score=27.15 Aligned_cols=89 Identities=13% Similarity=0.174 Sum_probs=53.0
Q ss_pred hHHHHHHHHHHHHhhhhhhhhhccCC---------------CChh--hhhhhHHHHHHHHHHHHHHhheeeeccccccCC
Q 019892 159 HGALGMIGWGIILPVGAIIPRYFKHK---------------DPLW--YYLHAIIQLVGFIFGLATVLLGIQLYNKLNVKN 221 (334)
Q Consensus 159 Hg~lm~~aw~~l~p~gil~aR~~k~~---------------~~~w--~~~H~~~q~~~~~~~i~g~~l~~~~~~~~~~~~ 221 (334)
=|.+..+++++.+-.|++.+=++.+. .--| ..+|..--..-++|+-+=+.=++.. +...+
T Consensus 47 fGsll~~~l~iQilTGifLam~Y~p~~~~Af~Sv~~I~rdV~~GwliR~~H~~gAs~ffi~iylHi~Rglyy-gsY~~-- 123 (445)
T 2qjy_A 47 WGVVLAFCLVLQIVTGIVLAMHYTPHVDLAFASVEHIMRNVNGGFMLRYLHANGASLFFIAVYLHIFRGLYY-GSYKA-- 123 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCSTTTHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTTST--
T ss_pred hHHHHHHHHHHHHHHHHHHHeeccCCcHHHHHHHHHHHhhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cccCC--
Confidence 59999999999999999888665542 1124 3555542222122221111111221 22211
Q ss_pred CCcccchhhhHHHHHHHHHHHHHhhcccCC
Q 019892 222 ANISAHRGIGIFILVLSILQILAFFLRPSK 251 (334)
Q Consensus 222 ~~~~~H~~lG~~~~~l~~~Q~~~g~~r~~~ 251 (334)
....==.+|++++++.......|+.-|..
T Consensus 124 -Pr~~~W~~Gv~l~ll~m~taF~GYvLPwg 152 (445)
T 2qjy_A 124 -PREVTWIVGMLIYLAMMATAFMGYVLPWG 152 (445)
T ss_dssp -TCHHHHHHHHHHHHHHHHHHHHHHHTTCB
T ss_pred -CccceeeehHHHHHHHHHHHHHheeccCC
Confidence 23344578999999999999999988765
No 20
>2nr1_A NR1 M2, M2; receptor, signal, postsynaptic membrane; NMR {Homo sapiens} SCOP: j.35.1.1
Probab=21.73 E-value=59 Score=18.10 Aligned_cols=16 Identities=25% Similarity=0.663 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHhhhh
Q 019892 160 GALGMIGWGIILPVGA 175 (334)
Q Consensus 160 g~lm~~aw~~l~p~gi 175 (334)
..-|..+|++|+-.|+
T Consensus 10 ~aa~wF~WGvllnsgi 25 (27)
T 2nr1_A 10 SSAMWFSWGVLLNSGI 25 (27)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred hhhHHHhhHhheeccc
Confidence 3567889999988775
No 21
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=21.03 E-value=4.7e+02 Score=23.68 Aligned_cols=11 Identities=9% Similarity=-0.055 Sum_probs=4.7
Q ss_pred hhHHHHHHHHH
Q 019892 262 YHHWFGRLALF 272 (334)
Q Consensus 262 ~H~~~G~~~~~ 272 (334)
.+.+++.+..+
T Consensus 386 ~~~~~~~~~~~ 396 (445)
T 3l1l_A 386 AYLAVTTIAFL 396 (445)
T ss_dssp TTHHHHHHHHH
T ss_pred hhHHHHHHHHH
Confidence 44444443333
Done!