BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 019893
         (334 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1VBV|A Chain A, Crystal Structure Of Hypothetical Protein From Esherichia
           Coli
          Length = 105

 Score = 35.8 bits (81), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 29/89 (32%), Positives = 46/89 (51%), Gaps = 12/89 (13%)

Query: 208 FRLGQKVNHKIFGYRAVICGMDPVCCES-SSWMEIAQVEKLQQGPSQPFYQVLVDVHADP 266
           F +GQ+V H + GY  V+  +DPV   S  S  E+A  ++L+   + P+Y V+++   D 
Sbjct: 6   FGIGQQVRHSLLGYLGVVVDIDPVYSLSEPSPDELAVNDELR---AAPWYHVVME---DD 59

Query: 267 NILV--AYVAEENL---LASDQPDMARFD 290
           N L    Y+AE  L   L  + P+    D
Sbjct: 60  NGLPVHTYLAEAQLSSELQDEHPEQPSMD 88


>pdb|1DP4|A Chain A, Dimerized Hormone Binding Domain Of The Atrial Natriuretic
           Peptide Receptor
 pdb|1DP4|C Chain C, Dimerized Hormone Binding Domain Of The Atrial Natriuretic
           Peptide Receptor
 pdb|1T34|A Chain A, Rotation Mechanism For Transmembrane Signaling By The
           Atrial Natriuretic Peptide Receptor
 pdb|1T34|B Chain B, Rotation Mechanism For Transmembrane Signaling By The
           Atrial Natriuretic Peptide Receptor
 pdb|3A3K|A Chain A, Reversibly Bound Chloride In The Atrial Natriuretic
           Peptide Receptor Hormone-Binding Domain
 pdb|3A3K|B Chain B, Reversibly Bound Chloride In The Atrial Natriuretic
           Peptide Receptor Hormone-Binding Domain
          Length = 435

 Score = 30.8 bits (68), Expect = 0.99,   Method: Compositional matrix adjust.
 Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 2/32 (6%)

Query: 25  WRRHFKLLEKSRIGIDRPCFCHQFVQGLHLRV 56
           W     +L   R+G DRPCF    V+GL++RV
Sbjct: 146 WEHQALVLYADRLGDDRPCFF--IVEGLYMRV 175


>pdb|2I1Y|A Chain A, Crystal Structure Of The Phosphatase Domain Of Human Ptp
           Ia-2
 pdb|2I1Y|B Chain B, Crystal Structure Of The Phosphatase Domain Of Human Ptp
           Ia-2
          Length = 301

 Score = 29.6 bits (65), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 14/53 (26%), Positives = 22/53 (41%)

Query: 256 YQVLVDVHADPNILVAYVAEENLLASDQPDMARFDHPYISFLFYGTDTAGDFI 308
           +Q L    A+PN       E N+  +  PD   +DH  I      + +  D+I
Sbjct: 35  WQALCAYQAEPNTCATAQGEGNIKKNRHPDFLPYDHARIKLKVESSPSRSDYI 87


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.137    0.405 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,955,751
Number of Sequences: 62578
Number of extensions: 335007
Number of successful extensions: 673
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 665
Number of HSP's gapped (non-prelim): 16
length of query: 334
length of database: 14,973,337
effective HSP length: 99
effective length of query: 235
effective length of database: 8,778,115
effective search space: 2062857025
effective search space used: 2062857025
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)