Query 019893
Match_columns 334
No_of_seqs 230 out of 583
Neff 4.6
Searched_HMMs 29240
Date Mon Mar 25 08:41:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019893.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019893hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vbv_A Hypothetical protein B0 100.0 3E-33 1E-37 231.5 6.5 100 205-310 3-102 (105)
2 1e52_A Excinuclease ABC subuni 97.8 2.8E-05 9.6E-10 58.8 4.9 39 153-191 21-59 (63)
3 2d7d_A Uvrabc system protein B 95.6 0.0066 2.3E-07 62.8 3.7 38 153-190 623-660 (661)
4 1c4o_A DNA nucleotide excision 94.5 0.0065 2.2E-07 62.9 0.0 39 153-191 608-646 (664)
5 3pxg_A Negative regulator of g 75.8 7.4 0.00025 38.1 8.1 45 149-193 394-438 (468)
6 3he5_B Synzip2; heterodimeric 71.0 14 0.00049 26.0 6.3 27 157-191 21-47 (52)
7 3ghg_A Fibrinogen alpha chain; 56.4 30 0.001 35.6 8.0 20 118-137 109-128 (562)
8 3hht_B NitrIle hydratase beta 55.4 20 0.00069 32.9 6.1 54 204-263 138-204 (229)
9 3fx7_A Putative uncharacterize 50.8 95 0.0032 24.9 8.9 70 121-191 15-86 (94)
10 1e52_A Excinuclease ABC subuni 47.0 12 0.0004 27.9 2.6 33 102-134 26-58 (63)
11 3lay_A Zinc resistance-associa 45.2 1.2E+02 0.0042 26.4 9.3 38 155-192 91-130 (175)
12 4a4z_A Antiviral helicase SKI2 44.9 33 0.0011 37.1 6.7 73 154-229 552-633 (997)
13 2dig_A Lamin-B receptor; tudor 44.3 60 0.002 24.7 6.0 53 204-282 9-65 (68)
14 2pih_A Protein YMCA; regulate 44.1 45 0.0015 28.2 6.1 74 117-191 9-82 (151)
15 3mlq_E Transcription-repair co 44.0 9.4 0.00032 28.7 1.7 55 207-282 2-56 (71)
16 4a4f_A SurviVal of motor neuro 40.6 75 0.0026 22.8 6.1 56 202-282 3-62 (64)
17 3qyh_B CO-type nitrIle hydrata 40.3 20 0.00069 32.7 3.5 55 203-263 126-193 (219)
18 2lf0_A Uncharacterized protein 39.7 46 0.0016 27.9 5.3 43 150-192 11-53 (123)
19 1ez3_A Syntaxin-1A; three heli 33.2 1.7E+02 0.0059 22.8 7.8 67 116-192 9-78 (127)
20 4fm4_B NitrIle hydratase beta 31.5 36 0.0012 30.7 3.7 53 205-263 116-181 (206)
21 2zzd_A Thiocyanate hydrolase s 31.0 48 0.0017 27.9 4.1 55 203-263 32-99 (126)
22 1pjr_A PCRA; DNA repair, DNA r 30.9 10 0.00035 39.1 0.0 24 206-230 671-694 (724)
23 3vlc_E Golgi to ER traffic pro 30.6 86 0.003 25.1 5.4 47 146-192 27-73 (94)
24 1ed7_A Chitinase A1, (CHBD-CHI 27.1 11 0.00037 25.9 -0.5 28 204-231 4-36 (45)
25 3sja_C Golgi to ER traffic pro 27.1 1.4E+02 0.0047 22.4 5.6 40 153-192 10-49 (65)
26 1khc_A DNA cytosine-5 methyltr 27.0 1.6E+02 0.0053 24.9 6.7 60 204-282 8-70 (147)
27 1s94_A S-syntaxin; three helix 26.8 2.6E+02 0.0087 23.5 8.2 67 116-192 40-109 (180)
28 2fzt_A Hypothetical protein TM 26.4 72 0.0025 24.8 4.0 30 158-187 4-33 (79)
29 1mhn_A SurviVal motor neuron p 25.5 1.7E+02 0.006 20.4 6.0 51 207-282 3-57 (59)
30 1ugp_B NitrIle hydratase beta 25.0 57 0.0019 29.8 3.8 55 203-263 134-201 (226)
31 3r8n_P 30S ribosomal protein S 24.9 32 0.0011 26.9 1.8 12 250-261 11-22 (82)
32 2l8d_A Lamin-B receptor; DNA b 24.4 57 0.0019 24.7 3.0 52 204-281 6-61 (66)
33 3sjb_C Golgi to ER traffic pro 23.9 99 0.0034 24.8 4.5 41 152-192 26-66 (93)
34 3a8g_B NitrIle hydratase subun 23.7 1.1E+02 0.0037 27.7 5.3 50 205-263 120-187 (212)
35 2xhe_B Syntaxin1; exocytosis, 22.9 4.2E+02 0.014 23.8 10.2 29 113-141 42-73 (279)
36 3lay_A Zinc resistance-associa 22.4 3.6E+02 0.012 23.4 8.3 19 121-139 87-105 (175)
37 3pxi_A Negative regulator of g 21.9 1E+02 0.0034 31.7 5.4 42 151-192 396-437 (758)
38 2rh2_A Dihydrofolate reductase 21.9 61 0.0021 23.6 2.7 26 204-229 4-30 (62)
No 1
>1vbv_A Hypothetical protein B0966; protein degradation, structural genomics, unknown function; 2.70A {Escherichia coli} SCOP: b.34.17.1
Probab=99.98 E-value=3e-33 Score=231.47 Aligned_cols=100 Identities=24% Similarity=0.338 Sum_probs=69.0
Q ss_pred ccccccccEEEEecCCeeEEEEcccccccCChhhHHHhhhhhcCCCCCCCeEEEEeecCCCCCceeeeecccCccccCCC
Q 019893 205 RFAFRLGQKVNHKIFGYRAVICGMDPVCCESSSWMEIAQVEKLQQGPSQPFYQVLVDVHADPNILVAYVAEENLLASDQP 284 (334)
Q Consensus 205 ~VkFrVGQVVrHrrygYrGVIvGWD~~c~a~eeW~~~~~v~~l~~g~~QPFY~VLvd~~d~~~~~~~YVAEENLe~~~~p 284 (334)
.++|+|||||+||+|||+|||+||||.|+++++|+..+..+ ..+++|||||||++++| +.+.++||||+||++.+.+
T Consensus 3 ~~kf~IGqvvrHr~~gyrGVI~d~Dp~~~~~eew~~~~~~~--~~~~~QPfYhVL~e~~~-~~~~~~YVaEenL~~~~s~ 79 (105)
T 1vbv_A 3 ASKFGIGQQVRHSLLGYLGVVVDIDPVYSLSEPSPDELAVN--DELRAAPWYHVVMEDDN-GLPVHTYLAEAQLSSELQD 79 (105)
T ss_dssp CCSSCTTCEEEETTTCCEEEEEEEECC--------------------CCCEEEEEEECSS-CCEEEEEEEGGGEEECCCS
T ss_pred cceecCCCEEEecccCCCEEEEeECcccCCCHHHHHhcccc--CccCCCCceEEEEeCCC-CceeeeEEcHHhccccCCC
Confidence 57999999999999999999999999999999999999766 46899999999999764 3344599999999998754
Q ss_pred CCCccCchhhhhhccccCCCCceeeC
Q 019893 285 DMARFDHPYISFLFYGTDTAGDFIPI 310 (334)
Q Consensus 285 ~~~pI~HP~ig~yF~rFD~~grYvPn 310 (334)
.+|.||.++.||++|++ |+|+||
T Consensus 80 --~~i~HP~i~~~F~~f~~-~~y~p~ 102 (105)
T 1vbv_A 80 --EHPEQPSMDELAQTIRK-QLQAPR 102 (105)
T ss_dssp --CCTTCHHHHHHHHHHTT-C-----
T ss_pred --CCcCCCCHHHHhHhhcC-Cccccc
Confidence 78999999999999986 589997
No 2
>1e52_A Excinuclease ABC subunit; DNA excision repair, UVRB, DNA repair, UVRC binding domain; NMR {Escherichia coli} SCOP: a.2.9.1 PDB: 1qoj_A
Probab=97.76 E-value=2.8e-05 Score=58.82 Aligned_cols=39 Identities=21% Similarity=0.218 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHhhchhchhHHHHHHHHHHHHHHHH
Q 019893 153 DKALSIIRLRADLQKAIDSENYALAADLRDQICKLEAES 191 (334)
Q Consensus 153 d~a~qL~~Lk~~Lq~aI~~E~yE~AA~LRD~Ik~LE~~~ 191 (334)
+....|.+|+.+|++|.+..+||+||.+||+|+.|+.++
T Consensus 21 ~~~~~i~~Le~~M~~AA~~leFE~AA~lRD~I~~L~~~l 59 (63)
T 1e52_A 21 ALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQLRELF 59 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHH
Confidence 345568889999999999999999999999999998764
No 3
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=95.57 E-value=0.0066 Score=62.79 Aligned_cols=38 Identities=24% Similarity=0.467 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHhhchhchhHHHHHHHHHHHHHHH
Q 019893 153 DKALSIIRLRADLQKAIDSENYALAADLRDQICKLEAE 190 (334)
Q Consensus 153 d~a~qL~~Lk~~Lq~aI~~E~yE~AA~LRD~Ik~LE~~ 190 (334)
+....|.+|+++|++|.++++||+||+|||+|++|+++
T Consensus 623 ~~~~~i~~l~~~m~~aa~~~~fe~Aa~~Rd~i~~l~~~ 660 (661)
T 2d7d_A 623 ERQKVVEQMEHEMKEAAKALDFERAAELRDLLLELKAE 660 (661)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHC------
T ss_pred HHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHhc
Confidence 45566888999999999999999999999999999753
No 4
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=94.51 E-value=0.0065 Score=62.88 Aligned_cols=39 Identities=33% Similarity=0.378 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhhchhchhHHHHHHHHHHHHHHHH
Q 019893 153 DKALSIIRLRADLQKAIDSENYALAADLRDQICKLEAES 191 (334)
Q Consensus 153 d~a~qL~~Lk~~Lq~aI~~E~yE~AA~LRD~Ik~LE~~~ 191 (334)
+....|.+|+.+|++|.++++||+||.|||+|++|++++
T Consensus 608 ~~~~~i~~l~~~m~~aa~~l~fe~Aa~lRd~i~~l~~~~ 646 (664)
T 1c4o_A 608 DLRERIAELELAMWQAAEALDFERAARLRDEIRALEARL 646 (664)
T ss_dssp ---------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHH
Confidence 345567889999999999999999999999999998765
No 5
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=75.85 E-value=7.4 Score=38.08 Aligned_cols=45 Identities=20% Similarity=0.296 Sum_probs=38.6
Q ss_pred hhHHHHHHHHHHHHHHHHHhhchhchhHHHHHHHHHHHHHHHHHH
Q 019893 149 SEAQDKALSIIRLRADLQKAIDSENYALAADLRDQICKLEAESLA 193 (334)
Q Consensus 149 ~~a~d~a~qL~~Lk~~Lq~aI~~E~yE~AA~LRD~Ik~LE~~~~a 193 (334)
.+-.+...+|.++..+...++..++|++|+.|++++.+|+++++.
T Consensus 394 ~~i~~l~~~i~~l~~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~~ 438 (468)
T 3pxg_A 394 PNLKELEQKLDEVRKEKDAAVQSQEFEKAASLRDTEQRLREQVED 438 (468)
T ss_dssp SSTHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHH
Confidence 344566777888999999999999999999999999999988863
No 6
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=70.99 E-value=14 Score=25.99 Aligned_cols=27 Identities=44% Similarity=0.646 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHhhchhchhHHHHHHHHHHHHHHHH
Q 019893 157 SIIRLRADLQKAIDSENYALAADLRDQICKLEAES 191 (334)
Q Consensus 157 qL~~Lk~~Lq~aI~~E~yE~AA~LRD~Ik~LE~~~ 191 (334)
||++-.+.|.+.| |-|||+|..||.+.
T Consensus 21 qlerdeqnlekii--------anlrdeiarlenev 47 (52)
T 3he5_B 21 QLERDEQNLEKII--------ANLRDEIARLENEV 47 (52)
T ss_dssp HHHHHHHHHHHHH--------HHHHHHHHHHHHHH
T ss_pred hhhhhHhhHHHHH--------HHHHHHHHHHHHHH
Confidence 4555555666666 88999999998654
No 7
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=56.38 E-value=30 Score=35.58 Aligned_cols=20 Identities=10% Similarity=0.410 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 019893 118 YDIAQQLRNKLTEVEEEISR 137 (334)
Q Consensus 118 y~~a~~l~~~l~~i~~e~~~ 137 (334)
++.+.+||..|+.|..+|+.
T Consensus 109 nE~S~ELRRrIqyLKekVdn 128 (562)
T 3ghg_A 109 NRVSEDLRSRIEVLKRKVIE 128 (562)
T ss_dssp HHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33344888888888777543
No 8
>3hht_B NitrIle hydratase beta subunit; alpha and beta proteins (A+B), lyase; 1.16A {Geobacillus pallidus} SCOP: b.34.4.4 PDB: 2dpp_B 1v29_B
Probab=55.36 E-value=20 Score=32.91 Aligned_cols=54 Identities=19% Similarity=0.218 Sum_probs=33.5
Q ss_pred cccccccccEEEEe--------c-----CCeeEEEEcccccccCChhhHHHhhhhhcCCCCCCCeEEEEeecC
Q 019893 204 ARFAFRLGQKVNHK--------I-----FGYRAVICGMDPVCCESSSWMEIAQVEKLQQGPSQPFYQVLVDVH 263 (334)
Q Consensus 204 ~~VkFrVGQVVrHr--------r-----ygYrGVIvGWD~~c~a~eeW~~~~~v~~l~~g~~QPFY~VLvd~~ 263 (334)
...+|+||+.|+-| | -|.+|+|+-....+-.++. .. +. .....||+|+|-++..
T Consensus 138 ~~~~F~vGd~Vrv~~~~~~~HtR~P~Y~RG~~G~I~~~~g~~~~pd~----~a-~g-~~~~p~~lY~V~F~~~ 204 (229)
T 3hht_B 138 ASPRFKVGERIKTKNIHPTGHTRFPRYARDKYGVIDEVYGAHVFPDD----AA-HR-KGENPQYLYRVRFEAE 204 (229)
T ss_dssp SCCSCCTTCEEEECCCCCSSCCSCCGGGTTCEEEEEEEEEEECCHHH----HT-TT-SCCCCEEEEEEEEEHH
T ss_pred CCCCCCCCCEEEECCCCCCCcccCcHHHCCCeeEEEEEecCccCccc----cc-CC-CCCCCceeEEEEecch
Confidence 45789999999843 2 2348999866544433322 10 11 1224599999999754
No 9
>3fx7_A Putative uncharacterized protein; double helix, unknown function; 1.65A {Helicobacter pylori} SCOP: a.25.5.1 PDB: 2gts_A
Probab=50.81 E-value=95 Score=24.87 Aligned_cols=70 Identities=17% Similarity=0.131 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCchhH--HHHHHHHHHHHHHHHHhhchhchhHHHHHHHHHHHHHHHH
Q 019893 121 AQQLRNKLTEVEEEISRQLEAKRGLSSKSEA--QDKALSIIRLRADLQKAIDSENYALAADLRDQICKLEAES 191 (334)
Q Consensus 121 a~~l~~~l~~i~~e~~~~~~~K~~~~~~~~a--~d~a~qL~~Lk~~Lq~aI~~E~yE~AA~LRD~Ik~LE~~~ 191 (334)
|++|..=+..+.+++..++..=...++|... ....-.+++|...|+..++ .--+..+-|+.+|+.||..-
T Consensus 15 a~~L~~F~d~Lq~~~~~L~~~f~~L~sWqDqkr~kFee~fe~l~s~l~~f~e-~a~e~vp~L~~~i~vle~~~ 86 (94)
T 3fx7_A 15 VGHLERFKELLREEVNSLSNHFHNLESWRDARRDKFSEVLDNLKSTFNEFDE-AAQEQIAWLKERIRVLEEDY 86 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCSCCSHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchHhhHHHHHHHHHHHHHHHHHHHHHH-hhHHHhHHHHHHHHHhHHHH
Confidence 3478777777777766665554444555544 4556667888888888876 55677889999999998754
No 10
>1e52_A Excinuclease ABC subunit; DNA excision repair, UVRB, DNA repair, UVRC binding domain; NMR {Escherichia coli} SCOP: a.2.9.1 PDB: 1qoj_A
Probab=47.02 E-value=12 Score=27.90 Aligned_cols=33 Identities=21% Similarity=0.251 Sum_probs=30.3
Q ss_pred HhhhhhhhhhccchHHHHHHHHHHHHHHHHHHH
Q 019893 102 QLDLATRVQCALNMEEYDIAQQLRNKLTEVEEE 134 (334)
Q Consensus 102 ~~~~~~rlq~~~~~~~y~~a~~l~~~l~~i~~e 134 (334)
+.+|..+.+.+..-..||.|.++|.+|..++..
T Consensus 26 i~~Le~~M~~AA~~leFE~AA~lRD~I~~L~~~ 58 (63)
T 1e52_A 26 IHELEGLMMQHAQNLEFEEAAQIRDQLHQLREL 58 (63)
T ss_dssp HHHHHHHHHHHHHTTCHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 578999999999999999999999999998755
No 11
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=45.21 E-value=1.2e+02 Score=26.43 Aligned_cols=38 Identities=8% Similarity=0.055 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHhhchhchh--HHHHHHHHHHHHHHHHH
Q 019893 155 ALSIIRLRADLQKAIDSENYA--LAADLRDQICKLEAESL 192 (334)
Q Consensus 155 a~qL~~Lk~~Lq~aI~~E~yE--~AA~LRD~Ik~LE~~~~ 192 (334)
..+|...+.+|+.++..++|. ++..|.++|.+|.+++.
T Consensus 91 r~ql~akr~EL~aL~~a~~~DeakI~aL~~Ei~~Lr~qL~ 130 (175)
T 3lay_A 91 RQQLISKRYEYNALLTASSPDTAKINAVAKEMESLGQKLD 130 (175)
T ss_dssp HHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 346777888999999888775 55567788888876665
No 12
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=44.94 E-value=33 Score=37.12 Aligned_cols=73 Identities=10% Similarity=0.013 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHhhch------hchhHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccccEEEEecC--Ce-eEE
Q 019893 154 KALSIIRLRADLQKAIDS------ENYALAADLRDQICKLEAESLAASATALAFENARFAFRLGQKVNHKIF--GY-RAV 224 (334)
Q Consensus 154 ~a~qL~~Lk~~Lq~aI~~------E~yE~AA~LRD~Ik~LE~~~~aas~~~l~~r~~~VkFrVGQVVrHrry--gY-rGV 224 (334)
...+|..+.+++..+-.. +++++++.+|++|++++.+..... ..+......++.|.||.-+.- ++ .||
T Consensus 552 ~~~~l~~l~~~~~~~~~~~c~~c~~~~~~~~~~r~~~~~~~~~~~~~~---~~~~~~~~~l~~gr~v~~~~~~~~~~~~~ 628 (997)
T 4a4z_A 552 HEKQIKVLQEELQTIEYKSCEICDNDIEKFLELMLAYKEATVNLMQEM---VKSPSILHILKEGRLVAFRDPNDCLKLGF 628 (997)
T ss_dssp HHHHHHHHHHHHHC--------------CHHHHHHHHHHHHHHHHHHH---TTSTTHHHHTCTTEEEEEECTTCCEEEEE
T ss_pred HHHHHHHHHHHHHHhhhhccccccccHHHHHHHHHHHHHHHHHHHHHH---hcCHhHHhhCCCCCEEEEecCCCCeeEEE
Confidence 344455566665542222 489999999999999987764322 222233347899999976542 32 689
Q ss_pred EEccc
Q 019893 225 ICGMD 229 (334)
Q Consensus 225 IvGWD 229 (334)
|+..+
T Consensus 629 v~~~~ 633 (997)
T 4a4z_A 629 VFKVS 633 (997)
T ss_dssp EEEEE
T ss_pred EEeec
Confidence 98754
No 13
>2dig_A Lamin-B receptor; tudor domain, integral nuclear envelope inner membrane protein, nuclear protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=44.29 E-value=60 Score=24.67 Aligned_cols=53 Identities=19% Similarity=0.221 Sum_probs=39.7
Q ss_pred cccccccccEEEEecCC----eeEEEEcccccccCChhhHHHhhhhhcCCCCCCCeEEEEeecCCCCCceeeeecccCcc
Q 019893 204 ARFAFRLGQKVNHKIFG----YRAVICGMDPVCCESSSWMEIAQVEKLQQGPSQPFYQVLVDVHADPNILVAYVAEENLL 279 (334)
Q Consensus 204 ~~VkFrVGQVVrHrryg----YrGVIvGWD~~c~a~eeW~~~~~v~~l~~g~~QPFY~VLvd~~d~~~~~~~YVAEENLe 279 (334)
+.++|.||+.|+-|+-| |.+-|++.| ...|-|.|+..++ ...=+.+.+|.
T Consensus 9 p~~~f~vgd~VmaRW~Gd~~yYparItSit---------------------s~~~~Y~VkfKdg-----T~e~L~~kDIK 62 (68)
T 2dig_A 9 PSRKFADGEVVRGRWPGSSLYYEVEILSHD---------------------STSQLYTVKYKDG-----TELELKENDIK 62 (68)
T ss_dssp CCCSSCSSCEEEEECTTTCCEEEEEEEEEE---------------------TTTTEEEEECTTS-----CEEEEETTTEE
T ss_pred CceEeecCCEEEEEccCCccceEEEEEEec---------------------cCCceEEEEecCC-----CEEEechhccc
Confidence 56799999999999877 788888876 1347799998662 34556777777
Q ss_pred ccC
Q 019893 280 ASD 282 (334)
Q Consensus 280 ~~~ 282 (334)
+++
T Consensus 63 p~~ 65 (68)
T 2dig_A 63 SGP 65 (68)
T ss_dssp CCC
T ss_pred cCC
Confidence 665
No 14
>2pih_A Protein YMCA; regulate community development, structural genomics, PSI-2, protein structure initiative; 2.10A {Bacillus subtilis} SCOP: a.281.1.1
Probab=44.15 E-value=45 Score=28.16 Aligned_cols=74 Identities=16% Similarity=0.135 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHhhchhchhHHHHHHHHHHHHHHHH
Q 019893 117 EYDIAQQLRNKLTEVEEEISRQLEAKRGLSSKSEAQDKALSIIRLRADLQKAIDSENYALAADLRDQICKLEAES 191 (334)
Q Consensus 117 ~y~~a~~l~~~l~~i~~e~~~~~~~K~~~~~~~~a~d~a~qL~~Lk~~Lq~aI~~E~yE~AA~LRD~Ik~LE~~~ 191 (334)
-|+.|.+|-..|.+-+ |+....+++.-....+++...-.+..+++.+++..-....++.......++++|+.++
T Consensus 9 I~d~A~eL~~aI~ese-eyk~yk~A~~~i~~D~eaq~li~eF~~~Q~~~~~~q~~Gk~~~~~e~~~el~~l~~~l 82 (151)
T 2pih_A 9 IVQQARNLAKMISETE-EVDFFKRAEAQINENDKVSTIVNQIKALQKQAVNLKHYEKHEALKQVEAKIDALQEEL 82 (151)
T ss_dssp HHHHHHHHHHHHTTBH-HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCH-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHcCCccchHHHHHHHHHHHHHH
Confidence 3555555555444421 2223333333222233444444444444444444332233333344444444444333
No 15
>3mlq_E Transcription-repair coupling factor; tudor, transferase-transcription complex; 2.91A {Thermus thermophilus}
Probab=44.04 E-value=9.4 Score=28.72 Aligned_cols=55 Identities=15% Similarity=0.093 Sum_probs=22.6
Q ss_pred ccccccEEEEecCCeeEEEEcccccccCChhhHHHhhhhhcCCCCCCCeEEEEeecCCCCCceeeeecccCccccC
Q 019893 207 AFRLGQKVNHKIFGYRAVICGMDPVCCESSSWMEIAQVEKLQQGPSQPFYQVLVDVHADPNILVAYVAEENLLASD 282 (334)
Q Consensus 207 kFrVGQVVrHrrygYrGVIvGWD~~c~a~eeW~~~~~v~~l~~g~~QPFY~VLvd~~d~~~~~~~YVAEENLe~~~ 282 (334)
.|++|+.|.|..+| .|.|.|.-..- -.+..+-||.+-..+ ....|||-+|+..+.
T Consensus 2 ~l~~GD~VVh~~hG-iG~~~gi~~~~---------------v~g~~~ey~~l~y~~-----~~~l~VPv~~~~~i~ 56 (71)
T 3mlq_E 2 PHMPGDYLIHPEHG-VGQYLGLETRE---------------VLGVKRDYLVLRYKG-----EGKLYLPVEQLPLLK 56 (71)
T ss_dssp ---------------CEEEEEEEEEE---------------ETTEEEEEEEEEETT-----TEEEEEESSSCC---
T ss_pred cCCCCCEEEECCCe-eEEEeEEEEEE---------------eCCeeEEEEEEEECC-----CCEEEEEhhhhccee
Confidence 48899999999987 46666653211 123345667666553 247899999998764
No 16
>4a4f_A SurviVal of motor neuron-related-splicing factor; RNA binding protein; HET: 2MR; NMR {Homo sapiens} PDB: 4a4h_A*
Probab=40.64 E-value=75 Score=22.84 Aligned_cols=56 Identities=16% Similarity=0.097 Sum_probs=38.2
Q ss_pred hccccccccccEEEEecC--C--eeEEEEcccccccCChhhHHHhhhhhcCCCCCCCeEEEEeecCCCCCceeeeecccC
Q 019893 202 ENARFAFRLGQKVNHKIF--G--YRAVICGMDPVCCESSSWMEIAQVEKLQQGPSQPFYQVLVDVHADPNILVAYVAEEN 277 (334)
Q Consensus 202 r~~~VkFrVGQVVrHrry--g--YrGVIvGWD~~c~a~eeW~~~~~v~~l~~g~~QPFY~VLvd~~d~~~~~~~YVAEEN 277 (334)
.++...+++|+.+.=+.. | |+++|.+.+.. ..-|.|+..+. +...-|+-.+
T Consensus 3 ~~~~~~~~vGd~c~A~~s~Dg~wYrA~I~~v~~~---------------------~~~~~V~fvdY----Gn~e~V~~~~ 57 (64)
T 4a4f_A 3 TQPTHSWKVGDKCMAVWSEDGQCYEAEIEEIDEE---------------------NGTAAITFAGY----GNAEVTPLLN 57 (64)
T ss_dssp SCCSSCCCTTCEEEEECTTTSSEEEEEEEEEETT---------------------TTEEEEEETTT----TEEEEEEGGG
T ss_pred CCcCCCCCCCCEEEEEECCCCCEEEEEEEEEcCC---------------------CCEEEEEEEec----CCEEEEeHHH
Confidence 356778999999985542 2 89999876531 12377877653 3456788888
Q ss_pred ccccC
Q 019893 278 LLASD 282 (334)
Q Consensus 278 Le~~~ 282 (334)
|.+++
T Consensus 58 Lrpl~ 62 (64)
T 4a4f_A 58 LKPVE 62 (64)
T ss_dssp EECCS
T ss_pred cEeCC
Confidence 87765
No 17
>3qyh_B CO-type nitrIle hydratase beta subunit; cobalt, cysteine sulfinic acid, lyase; 2.00A {Pseudomonas putida} SCOP: b.34.4.0 PDB: 3qxe_B 3qz5_B 3qyg_B 3qz9_B
Probab=40.30 E-value=20 Score=32.67 Aligned_cols=55 Identities=22% Similarity=0.173 Sum_probs=34.1
Q ss_pred ccccccccccEEEEe--------c-----CCeeEEEEcccccccCChhhHHHhhhhhcCCCCCCCeEEEEeecC
Q 019893 203 NARFAFRLGQKVNHK--------I-----FGYRAVICGMDPVCCESSSWMEIAQVEKLQQGPSQPFYQVLVDVH 263 (334)
Q Consensus 203 ~~~VkFrVGQVVrHr--------r-----ygYrGVIvGWD~~c~a~eeW~~~~~v~~l~~g~~QPFY~VLvd~~ 263 (334)
....+|+||+.|+-+ | -|.+|+|.-....+-.++. .. +. .....||+|+|-++..
T Consensus 126 ~~~~~F~vGd~Vrv~~~~~~~HtR~P~Y~RG~~G~I~~~~g~~~~pd~----~a-~g-~~~~p~~lY~V~F~~~ 193 (219)
T 3qyh_B 126 GARARFAVGDKVRVLNKNPVGHTRMPRYTRGKVGTVVIDHGVFVTPDT----AA-HG-KGEHPQHVYTVSFTSV 193 (219)
T ss_dssp CSCCCCCTTCEEEECCCCCSSCCCSCGGGTTCEEEEEEEEEEECCHHH----HT-TT-SCCCCEEEEEEEEEHH
T ss_pred CCCCCCCCCCEEEECCCCCCCcccccHHHCCCeeEEEEEecCccCccc----cc-cC-CCCCCceeEEEEecch
Confidence 345799999999842 2 2348999866544443322 10 11 1235699999999753
No 18
>2lf0_A Uncharacterized protein YIBL; two-domain protein, structural genomics, PSI-biology, protei structure initiative; NMR {Shigella flexneri}
Probab=39.73 E-value=46 Score=27.90 Aligned_cols=43 Identities=21% Similarity=0.102 Sum_probs=36.5
Q ss_pred hHHHHHHHHHHHHHHHHHhhchhchhHHHHHHHHHHHHHHHHH
Q 019893 150 EAQDKALSIIRLRADLQKAIDSENYALAADLRDQICKLEAESL 192 (334)
Q Consensus 150 ~a~d~a~qL~~Lk~~Lq~aI~~E~yE~AA~LRD~Ik~LE~~~~ 192 (334)
|-.....+|..++.+|..|+...+-+.-+.+.++|.+|+.++.
T Consensus 11 Eiq~L~drLD~~~rKlaaa~~rgd~~~i~qf~~E~~~l~k~I~ 53 (123)
T 2lf0_A 11 EIKRLSDRLDAIRHQQADLSLVEAADKYAELEKEKATLEAEIA 53 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTTCTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHH
Confidence 3344556788889999999999999999999999999988775
No 19
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=33.16 E-value=1.7e+02 Score=22.85 Aligned_cols=67 Identities=15% Similarity=0.313 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHhhchhchhHHHHHHHHHHHHHHHHH
Q 019893 116 EEYDIAQQLRNKLTEVEEE---ISRQLEAKRGLSSKSEAQDKALSIIRLRADLQKAIDSENYALAADLRDQICKLEAESL 192 (334)
Q Consensus 116 ~~y~~a~~l~~~l~~i~~e---~~~~~~~K~~~~~~~~a~d~a~qL~~Lk~~Lq~aI~~E~yE~AA~LRD~Ik~LE~~~~ 192 (334)
++|+..++|+..|..|... |..+|..=-- +...+. .++.+|...+. +-=-.|-.+++.|+.|++...
T Consensus 9 ~F~~~v~~I~~~i~~i~~~v~~l~~~~~~~L~-~~~~~~--------~~~~~l~~l~~-~i~~~a~~ik~~Lk~l~~~~~ 78 (127)
T 1ez3_A 9 EFFEQVEEIRGFIDKIAENVEEVKRKHSAILA-SPNPDE--------KTKEELEELMS-DIKKTANKVRSKLKSIEQSIE 78 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CSSCCH--------HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCccH--------HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 4678888899888888655 4444432111 111111 24445554442 222467888999999876554
No 20
>4fm4_B NitrIle hydratase beta subunit; iron type hydratase, hydrolysis, sulfinic acid, lyase; 2.38A {Comamonas testosteroni}
Probab=31.47 E-value=36 Score=30.66 Aligned_cols=53 Identities=30% Similarity=0.442 Sum_probs=31.4
Q ss_pred ccccccccEEEEe--------c-----CCeeEEEEcccccccCChhhHHHhhhhhcCCCCCCCeEEEEeecC
Q 019893 205 RFAFRLGQKVNHK--------I-----FGYRAVICGMDPVCCESSSWMEIAQVEKLQQGPSQPFYQVLVDVH 263 (334)
Q Consensus 205 ~VkFrVGQVVrHr--------r-----ygYrGVIvGWD~~c~a~eeW~~~~~v~~l~~g~~QPFY~VLvd~~ 263 (334)
..+|+|||.|+-+ | -|..|+|+--.-..--|+. . .+. .....||.|.|-++..
T Consensus 116 ~~~F~vGd~Vrv~~~~~~gHtRlP~Y~rg~~G~I~~~~g~~v~Pd~----~-A~g-~ge~p~~lY~V~F~~~ 181 (206)
T 4fm4_B 116 EGGFKLGQRVHVKNEFVPGHTRFPAYIRGKAGVVVGISPAYPYPDA----A-AHG-EYGFSEPTYDVCFKSK 181 (206)
T ss_dssp TTCCCTTCEEEECCCCCSSCCSSCGGGTTCEEEEEEECCCEECHHH----H-TTT-CCSCEECEEEEEEEHH
T ss_pred CCCCcCCCEEEeCCCCCCCcccccHhhcCCeeEEEEEecCcCCccc----c-cCC-CCCCcceeEEEEEecc
Confidence 4579999999843 2 2348999865433322221 1 111 1223489999998754
No 21
>2zzd_A Thiocyanate hydrolase subunit alpha; scnase, cobalt, metalloprotein, sulfenic acid, sulfinic acid, nitrIle hydratase, carbonyl sulfide; HET: FRU TLA BGC; 1.78A {Thiobacillus thioparus} PDB: 2dd4_A 2dxb_A 2dd5_A* 2dxc_A*
Probab=31.00 E-value=48 Score=27.90 Aligned_cols=55 Identities=15% Similarity=0.172 Sum_probs=33.9
Q ss_pred ccccccccccEEEEec-------------CCeeEEEEcccccccCChhhHHHhhhhhcCCCCCCCeEEEEeecC
Q 019893 203 NARFAFRLGQKVNHKI-------------FGYRAVICGMDPVCCESSSWMEIAQVEKLQQGPSQPFYQVLVDVH 263 (334)
Q Consensus 203 ~~~VkFrVGQVVrHrr-------------ygYrGVIvGWD~~c~a~eeW~~~~~v~~l~~g~~QPFY~VLvd~~ 263 (334)
....+|+||+.|+-+. -|.+|+|.-.-..+-.++. .. .. .....||+|.|-++..
T Consensus 32 ~~~prF~vGDrVrvr~~~p~gHtRlP~YvRGk~G~I~~~~G~~v~Pd~----~A-~G-~ge~p~~lY~VrF~~~ 99 (126)
T 2zzd_A 32 AGKSKFNVGDRVRIKDLPDLFYTRTMTYTRGATGTIVRLVYESPAAED----EA-FG-NEENVEWFYSIVFAQK 99 (126)
T ss_dssp TCSCSSCTTCEEEECCCCCSSCCSSCGGGTTCEEEEEEEEEEECCHHH----HT-TT-CCSCCEEEEEEEEEHH
T ss_pred CCCCccCCCCEEEEccCCCCCceeccHHhCCCEEEEEEEecccCCcch----hc-cC-CCCCcceeEEEEecch
Confidence 4467899999999432 2348999755443333322 10 11 1335699999999754
No 22
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=30.91 E-value=10 Score=39.14 Aligned_cols=24 Identities=17% Similarity=0.527 Sum_probs=0.0
Q ss_pred cccccccEEEEecCCeeEEEEcccc
Q 019893 206 FAFRLGQKVNHKIFGYRAVICGMDP 230 (334)
Q Consensus 206 VkFrVGQVVrHrrygYrGVIvGWD~ 230 (334)
..|++|+.|+|+.||. |+|+..+.
T Consensus 671 ~~~~~g~~v~h~~fg~-g~v~~~~~ 694 (724)
T 1pjr_A 671 GSWKVGDRANHRKWGI-GTVVSVRG 694 (724)
T ss_dssp -------------------------
T ss_pred cccccCCEeeccCCCC-ceEEEEec
Confidence 4699999999999996 99988653
No 23
>3vlc_E Golgi to ER traffic protein 1; ATPase, membrane protein insertion, ATP binding, membrane PR binding; HET: ADP; 4.50A {Saccharomyces cerevisiae}
Probab=30.65 E-value=86 Score=25.14 Aligned_cols=47 Identities=15% Similarity=0.040 Sum_probs=39.5
Q ss_pred CCchhHHHHHHHHHHHHHHHHHhhchhchhHHHHHHHHHHHHHHHHH
Q 019893 146 SSKSEAQDKALSIIRLRADLQKAIDSENYALAADLRDQICKLEAESL 192 (334)
Q Consensus 146 ~~~~~a~d~a~qL~~Lk~~Lq~aI~~E~yE~AA~LRD~Ik~LE~~~~ 192 (334)
....+-.....++++|+.+|...=...+|.+=|+||-++-+|-.+++
T Consensus 27 ~~~~~~~~lk~E~~~lk~E~~stSaQDEFAKWAKL~Rk~DKl~~ele 73 (94)
T 3vlc_E 27 ELSKKYLAKVKERHELKEFNNSISAQDNYAKWTKNNRKLDSLDKEIN 73 (94)
T ss_dssp CTTHHHHHHHHHHHHHHHHHTTSCTTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HhHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444567788899999999999999999999999999999977776
No 24
>1ed7_A Chitinase A1, (CHBD-CHIA1); twisted beta-sandwich, hydrolase; NMR {Bacillus circulans} SCOP: b.72.2.1
Probab=27.14 E-value=11 Score=25.90 Aligned_cols=28 Identities=25% Similarity=0.332 Sum_probs=21.4
Q ss_pred cccccccccEEEEecCCeeEEEE-----ccccc
Q 019893 204 ARFAFRLGQKVNHKIFGYRAVIC-----GMDPV 231 (334)
Q Consensus 204 ~~VkFrVGQVVrHrrygYrGVIv-----GWD~~ 231 (334)
+...|.+|++|.|.-..|+++.- ||+|.
T Consensus 4 ~~~~Y~~Gd~Vty~G~~Y~c~q~hts~~~w~P~ 36 (45)
T 1ed7_A 4 VNTAYTAGQLVTYNGKTYKCLQPHTSLAGWEPS 36 (45)
T ss_dssp SSEEECTTCCEEETTEEECBCSCEEECTTCSSC
T ss_pred CCceEcCCCEEEECCeEEEEEecCcCcCCcccC
Confidence 35689999999997777877653 67764
No 25
>3sja_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.00A {Saccharomyces cerevisiae} PDB: 3sjc_C
Probab=27.05 E-value=1.4e+02 Score=22.44 Aligned_cols=40 Identities=18% Similarity=0.082 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHhhchhchhHHHHHHHHHHHHHHHHH
Q 019893 153 DKALSIIRLRADLQKAIDSENYALAADLRDQICKLEAESL 192 (334)
Q Consensus 153 d~a~qL~~Lk~~Lq~aI~~E~yE~AA~LRD~Ik~LE~~~~ 192 (334)
....++.+|+.++...=...+|.+=|+||-++-+|..+++
T Consensus 10 ~l~~E~~~lk~E~~stSaQDeFAKWaKL~Rk~DKl~~ele 49 (65)
T 3sja_C 10 AKVKERHELKEFNNSISAQDNYAKWTKNNRKLDSLDKEIN 49 (65)
T ss_dssp HHHHHHHHHHHHHTTSCTTTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556778888888888888999999999999999977776
No 26
>1khc_A DNA cytosine-5 methyltransferase 3B2; five beta-sheets barrel followed by five-helix bundle; HET: DNA; 1.80A {Mus musculus} SCOP: b.34.9.2 PDB: 3flg_A* 3qkj_A*
Probab=27.03 E-value=1.6e+02 Score=24.87 Aligned_cols=60 Identities=17% Similarity=0.109 Sum_probs=42.6
Q ss_pred cccccccccEEEEecCCe---eEEEEcccccccCChhhHHHhhhhhcCCCCCCCeEEEEeecCCCCCceeeeecccCccc
Q 019893 204 ARFAFRLGQKVNHKIFGY---RAVICGMDPVCCESSSWMEIAQVEKLQQGPSQPFYQVLVDVHADPNILVAYVAEENLLA 280 (334)
Q Consensus 204 ~~VkFrVGQVVrHrrygY---rGVIvGWD~~c~a~eeW~~~~~v~~l~~g~~QPFY~VLvd~~d~~~~~~~YVAEENLe~ 280 (334)
....|.+|++|-=|.-|| .|.|+.+...... ......|+|..-+. ...++|...+|.+
T Consensus 8 ~~~~~~~GDlVWaKvkGyPwWPa~V~~~~~~~~~---------------~~~~~~~~V~FFG~----~~~awv~~~~L~p 68 (147)
T 1khc_A 8 DDKEFGIGDLVWGKIKGFSWWPAMVVSWKATSKR---------------QAMPGMRWVQWFGD----GKFSEISADKLVA 68 (147)
T ss_dssp SSSSCCTTCEEEEEETTTEEEEEEEECGGGTTSC---------------CCCTTEEEEEETTT----CCEEEEEGGGCEE
T ss_pred CCccCcCCCEEEEecCCcCCCCEEeccchhhhcc---------------cCCCCeEEEEEecC----CCEEEEcHHHCcc
Confidence 345899999998888776 6999887542211 11234799987542 3579999999998
Q ss_pred cC
Q 019893 281 SD 282 (334)
Q Consensus 281 ~~ 282 (334)
+.
T Consensus 69 ~~ 70 (147)
T 1khc_A 69 LG 70 (147)
T ss_dssp TT
T ss_pred ch
Confidence 75
No 27
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1
Probab=26.84 E-value=2.6e+02 Score=23.52 Aligned_cols=67 Identities=9% Similarity=0.244 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHhhchhchhHHHHHHHHHHHHHHHHH
Q 019893 116 EEYDIAQQLRNKLTEVEEE---ISRQLEAKRGLSSKSEAQDKALSIIRLRADLQKAIDSENYALAADLRDQICKLEAESL 192 (334)
Q Consensus 116 ~~y~~a~~l~~~l~~i~~e---~~~~~~~K~~~~~~~~a~d~a~qL~~Lk~~Lq~aI~~E~yE~AA~LRD~Ik~LE~~~~ 192 (334)
.+|+..+.|+..|..|... |.++|..--. +.. . ...++.+|...+ .+---.|..++..|+.|++...
T Consensus 40 ~F~~~v~~I~~~i~~i~~~v~~l~~~~~~~L~--~~~-~------~~~~k~~le~l~-~~i~~~a~~ik~~Lk~l~~~~~ 109 (180)
T 1s94_A 40 EFFEQVEEIRAMIDKISDNVDAVKKKHSDILS--APQ-T------DDQMKEELEELM-TDIKRTANKVRGKLKTIELNIE 109 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC----------------CHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCC-c------hHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 4788999999999998755 4444433111 111 1 113444555444 2223367788888888876543
No 28
>2fzt_A Hypothetical protein TM0693; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.05A {Thermotoga maritima} SCOP: a.46.3.1 PDB: 2g42_A
Probab=26.45 E-value=72 Score=24.79 Aligned_cols=30 Identities=23% Similarity=0.376 Sum_probs=20.7
Q ss_pred HHHHHHHHHHhhchhchhHHHHHHHHHHHH
Q 019893 158 IIRLRADLQKAIDSENYALAADLRDQICKL 187 (334)
Q Consensus 158 L~~Lk~~Lq~aI~~E~yE~AA~LRD~Ik~L 187 (334)
|..+..+..+||+.|+||.--.|-++-.+|
T Consensus 4 I~EIEk~ID~aIE~edyE~L~~LL~kREkL 33 (79)
T 2fzt_A 4 IDEIERKIDEAIEKEDYETLLSLLNKRKEL 33 (79)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 455666788889999998666665555444
No 29
>1mhn_A SurviVal motor neuron protein; SMN, SMA, spinal muscular atrophy, RNA binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 PDB: 4a4e_A* 4a4g_A*
Probab=25.49 E-value=1.7e+02 Score=20.37 Aligned_cols=51 Identities=18% Similarity=0.092 Sum_probs=34.7
Q ss_pred ccccccEEEEecCC----eeEEEEcccccccCChhhHHHhhhhhcCCCCCCCeEEEEeecCCCCCceeeeecccCccccC
Q 019893 207 AFRLGQKVNHKIFG----YRAVICGMDPVCCESSSWMEIAQVEKLQQGPSQPFYQVLVDVHADPNILVAYVAEENLLASD 282 (334)
Q Consensus 207 kFrVGQVVrHrryg----YrGVIvGWD~~c~a~eeW~~~~~v~~l~~g~~QPFY~VLvd~~d~~~~~~~YVAEENLe~~~ 282 (334)
+|++|+.+.=+... |||+|.+.++. ..-|.|+..+- +...-|+-.+|.+++
T Consensus 3 ~~~~G~~c~A~~s~Dg~wYrA~I~~i~~~---------------------~~~~~V~f~DY----Gn~e~v~~~~Lr~~~ 57 (59)
T 1mhn_A 3 QWKVGDKCSAIWSEDGCIYPATIASIDFK---------------------RETCVVVYTGY----GNREEQNLSDLLSPI 57 (59)
T ss_dssp CCCTTCEEEEECTTTSCEEEEEEEEEETT---------------------TTEEEEEETTT----TEEEEEEGGGCBCTT
T ss_pred cCCcCCEEEEEECCCCCEEEEEEEEEcCC---------------------CCEEEEEEEcC----CCEEEEcHHHeeCCC
Confidence 58999988765432 89999875421 13478887553 345678888887764
No 30
>1ugp_B NitrIle hydratase beta subunit; complex, N-butyric acid, non-corrin cobalt, hydration, lyase; HET: BUA; 1.63A {Pseudonocardia thermophila} SCOP: b.34.4.4 PDB: 1ire_B 1ugq_B 1ugr_B 1ugs_B
Probab=25.03 E-value=57 Score=29.82 Aligned_cols=55 Identities=13% Similarity=0.116 Sum_probs=33.8
Q ss_pred ccccccccccEEEEe---------cC----CeeEEEEcccccccCChhhHHHhhhhhcCCCCCCCeEEEEeecC
Q 019893 203 NARFAFRLGQKVNHK---------IF----GYRAVICGMDPVCCESSSWMEIAQVEKLQQGPSQPFYQVLVDVH 263 (334)
Q Consensus 203 ~~~VkFrVGQVVrHr---------ry----gYrGVIvGWD~~c~a~eeW~~~~~v~~l~~g~~QPFY~VLvd~~ 263 (334)
....+|+||+.|+-| .- |.+|+|+-.-..+--++. .. +. .....||+|+|-++..
T Consensus 134 ~~~~~F~vGd~Vrv~~~~~~~HtR~P~Y~Rgk~G~I~~~~g~~~~pd~----~a-~g-~~~~p~~lY~V~F~~~ 201 (226)
T 1ugp_B 134 DRPPKFKEGDVVRFSTASPKGHARRARYVRGKTGTVVKHHGAYIYPDT----AG-NG-LGECPEHLYTVRFTAQ 201 (226)
T ss_dssp SSCCSCCTTCEEEECCCCCSSCCCCCGGGTTCEEEEEEEEEEECCHHH----HT-TT-SCCCCEEEEEEEEEHH
T ss_pred CCCCcCCCCCeEEEccCCCCCcccccHHhCCCeEEEEEEecCCCCcch----hc-cC-CCCCCceeEEEEechh
Confidence 346789999999943 22 348999855443333332 10 11 2345689999999753
No 31
>3r8n_P 30S ribosomal protein S16; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 1p6g_P 1p87_P* 1vs7_P* 2avy_P 2aw7_P 1vs5_P 2i2u_P 2i2p_P* 2qan_P* 2qb9_P* 2qbb_P* 2qbd_P 2qbf_P 2qbh_P* 2qbj_P* 2qou_P* 2qow_P* 2qoy_P* 2qp0_P* 2vho_P ...
Probab=24.87 E-value=32 Score=26.92 Aligned_cols=12 Identities=50% Similarity=0.969 Sum_probs=9.8
Q ss_pred CCCCCeEEEEee
Q 019893 250 GPSQPFYQVLVD 261 (334)
Q Consensus 250 g~~QPFY~VLvd 261 (334)
.+++|||+|.|-
T Consensus 11 ~kk~PfYrIVva 22 (82)
T 3r8n_P 11 AKKRPFYQVVVA 22 (82)
T ss_dssp CTTSCCEEEEEE
T ss_pred CCCCCEEEEEEe
Confidence 467999999874
No 32
>2l8d_A Lamin-B receptor; DNA binding protein; NMR {Gallus gallus}
Probab=24.40 E-value=57 Score=24.66 Aligned_cols=52 Identities=15% Similarity=0.181 Sum_probs=37.8
Q ss_pred cccccccccEEEEecCC----eeEEEEcccccccCChhhHHHhhhhhcCCCCCCCeEEEEeecCCCCCceeeeecccCcc
Q 019893 204 ARFAFRLGQKVNHKIFG----YRAVICGMDPVCCESSSWMEIAQVEKLQQGPSQPFYQVLVDVHADPNILVAYVAEENLL 279 (334)
Q Consensus 204 ~~VkFrVGQVVrHrryg----YrGVIvGWD~~c~a~eeW~~~~~v~~l~~g~~QPFY~VLvd~~d~~~~~~~YVAEENLe 279 (334)
+.++|.||+.|.-|+-| |.+-|++.|. ..|-|.|+..++ ...=+.+.+|.
T Consensus 6 p~~~~~vgd~VmaRW~Gd~~yYparI~Si~s---------------------~~~~Y~V~fKdg-----T~e~L~~kDIk 59 (66)
T 2l8d_A 6 PNRKYADGEVVMGRWPGSVLYYEVQVTSYDD---------------------ASHLYTVKYKDG-----TELALKESDIR 59 (66)
T ss_dssp SSSSSCSSCEEEEECTTSSCEEEEEEEEEET---------------------TTTEEEEEETTS-----CEEEEEGGGEE
T ss_pred CceEeecCCEEEEEcCCCccceEEEEEEecc---------------------CCceEEEEecCC-----CEEeechhccc
Confidence 56799999999999877 7888888761 346799998762 33445556665
Q ss_pred cc
Q 019893 280 AS 281 (334)
Q Consensus 280 ~~ 281 (334)
+.
T Consensus 60 p~ 61 (66)
T 2l8d_A 60 LQ 61 (66)
T ss_dssp CS
T ss_pred cc
Confidence 54
No 33
>3sjb_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.30A {Saccharomyces cerevisiae}
Probab=23.90 E-value=99 Score=24.76 Aligned_cols=41 Identities=17% Similarity=0.067 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHhhchhchhHHHHHHHHHHHHHHHHH
Q 019893 152 QDKALSIIRLRADLQKAIDSENYALAADLRDQICKLEAESL 192 (334)
Q Consensus 152 ~d~a~qL~~Lk~~Lq~aI~~E~yE~AA~LRD~Ik~LE~~~~ 192 (334)
.....++.+|+.++...=...+|.+=|+||-++.+|-.+++
T Consensus 26 ~~lk~E~~~lk~E~~stSaQDeFAKWaKL~Rk~DKl~~ele 66 (93)
T 3sjb_C 26 LAKVKERHELKEFNNSISAQDNYAKWTKNNRKLDSLDKEIN 66 (93)
T ss_dssp HHHHHHHHHHHHHHTTSCTTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666788899999988888999999999999999976665
No 34
>3a8g_B NitrIle hydratase subunit beta; Fe, iron, lyase, metal-binding, oxidation; 1.11A {Rhodococcus erythropolis} PDB: 2ahj_B 2cyz_B* 2cz0_B 2cz6_B 2cz7_B 2d0q_B 2cz1_B 2zcf_B 2zpb_B 2zpe_B 2zpf_B 2zpg_B 2zph_B 2zpi_B 2qdy_B 3a8h_B 3a8l_B 3a8o_B 3a8m_B 1ahj_B
Probab=23.74 E-value=1.1e+02 Score=27.74 Aligned_cols=50 Identities=20% Similarity=0.289 Sum_probs=30.6
Q ss_pred ccccccccEEEEe---------cC----CeeEEE-EcccccccCChhhHHHhhhhhcCCC----CCCCeEEEEeecC
Q 019893 205 RFAFRLGQKVNHK---------IF----GYRAVI-CGMDPVCCESSSWMEIAQVEKLQQG----PSQPFYQVLVDVH 263 (334)
Q Consensus 205 ~VkFrVGQVVrHr---------ry----gYrGVI-vGWD~~c~a~eeW~~~~~v~~l~~g----~~QPFY~VLvd~~ 263 (334)
..+|+||+.|+-| .- |-+|+| .-.-..+--|+ +...| ..+|.|+|-++..
T Consensus 120 ~~~F~vGd~Vrv~~~~~~gHtR~P~YvRGk~G~I~~~~~g~~~~Pd---------~~a~g~~~~~~~p~Y~V~F~~~ 187 (212)
T 3a8g_B 120 TTTFEVGQRVRVRDEYVPGHIRMPAYCRGRVGTISHRTTEKWPFPD---------AIGHGRNDAGEEPTYHVKFAAE 187 (212)
T ss_dssp CCCCCTTCEEEECCCCCSSCCSCCGGGTTCEEEEEEECSSCBCCHH---------HHTTTCSCCCCBCEEEEEEEHH
T ss_pred CcccCCCCeEEEecCCCCCcccccHHHCCCeEEEEEEeccCccCcc---------hhccCcccCCCCCeEEEEechH
Confidence 5789999999943 22 348999 43332222221 12223 5689999999753
No 35
>2xhe_B Syntaxin1; exocytosis, exocytosis complex, snare, neuro fusion, SM PROT choanoflagellates; 2.80A {Monosiga brevicollis}
Probab=22.95 E-value=4.2e+02 Score=23.83 Aligned_cols=29 Identities=10% Similarity=0.383 Sum_probs=20.7
Q ss_pred cchHHHHHHHHHHHHHHHHHHHH---HHHHHh
Q 019893 113 LNMEEYDIAQQLRNKLTEVEEEI---SRQLEA 141 (334)
Q Consensus 113 ~~~~~y~~a~~l~~~l~~i~~e~---~~~~~~ 141 (334)
.--++|+.++.|+..|..|..-| .++|..
T Consensus 42 ~~~~F~~~~~~I~~~I~~i~~~l~~L~~l~~~ 73 (279)
T 2xhe_B 42 FMADFFNRVKRIRDNIEDIEQAIEQVAQLHTE 73 (279)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34457889999999999987554 444443
No 36
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=22.43 E-value=3.6e+02 Score=23.41 Aligned_cols=19 Identities=26% Similarity=0.294 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 019893 121 AQQLRNKLTEVEEEISRQL 139 (334)
Q Consensus 121 a~~l~~~l~~i~~e~~~~~ 139 (334)
-++||..+...+.|+..+-
T Consensus 87 ~~~Lr~ql~akr~EL~aL~ 105 (175)
T 3lay_A 87 TSALRQQLISKRYEYNALL 105 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344544455555544433
No 37
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=21.92 E-value=1e+02 Score=31.74 Aligned_cols=42 Identities=21% Similarity=0.310 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHhhchhchhHHHHHHHHHHHHHHHHH
Q 019893 151 AQDKALSIIRLRADLQKAIDSENYALAADLRDQICKLEAESL 192 (334)
Q Consensus 151 a~d~a~qL~~Lk~~Lq~aI~~E~yE~AA~LRD~Ik~LE~~~~ 192 (334)
..+...++.+++.+...++..++|+.|+.+++++..++++++
T Consensus 396 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~ 437 (758)
T 3pxi_A 396 LKELEQKLDEVRKEKDAAVQSQEFEKAASLRDTEQRLREQVE 437 (758)
T ss_dssp THHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHH
Confidence 345556778888899999999999999999999999977665
No 38
>2rh2_A Dihydrofolate reductase type 2; folate metabolism, plasmid-encoded R67 DHFR, TMP-resistant DHFR, antibiotic resistance, methotrexate resistance; 0.96A {Escherichia coli} SCOP: b.34.4.1 PDB: 1vif_A* 1vie_A 2gqv_A 2rk1_A* 2rk2_A* 3sfm_A 2p4t_A*
Probab=21.86 E-value=61 Score=23.59 Aligned_cols=26 Identities=23% Similarity=0.437 Sum_probs=19.4
Q ss_pred cccccccccEEEEec-CCeeEEEEccc
Q 019893 204 ARFAFRLGQKVNHKI-FGYRAVICGMD 229 (334)
Q Consensus 204 ~~VkFrVGQVVrHrr-ygYrGVIvGWD 229 (334)
.+..|.-|+-||.|. -.|.|-|+||=
T Consensus 4 ~~atf~~gdrvrkksgaawqg~ivgwy 30 (62)
T 2rh2_A 4 SNATFGMGDRVRKKSGAAWQGQIVGWY 30 (62)
T ss_dssp --CCCCTTCEEEESSSSCCEEEEEEEE
T ss_pred ccceeccchhhhhccCccccceEeEEE
Confidence 345799999999654 23899999994
Done!