Query 019894
Match_columns 334
No_of_seqs 244 out of 1451
Neff 5.9
Searched_HMMs 46136
Date Fri Mar 29 05:23:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019894.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019894hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02498 omega-3 fatty acid de 100.0 4.9E-76 1.1E-80 586.1 26.1 323 1-334 1-327 (450)
2 PLN02505 omega-6 fatty acid de 100.0 3.5E-48 7.7E-53 382.3 22.1 233 101-334 23-271 (381)
3 PLN02598 omega-6 fatty acid de 100.0 5.9E-47 1.3E-51 377.8 22.5 257 56-334 39-296 (421)
4 PF11960 DUF3474: Domain of un 100.0 6.9E-39 1.5E-43 270.8 10.2 130 1-145 1-135 (136)
5 cd03507 Delta12-FADS-like The 100.0 6.6E-28 1.4E-32 222.5 14.9 115 125-239 1-115 (222)
6 COG3239 DesA Fatty acid desatu 99.9 4.6E-26 1E-30 222.8 15.6 209 109-333 16-225 (343)
7 cd03511 Rhizopine-oxygenase-li 99.9 1.9E-25 4.1E-30 212.4 18.0 204 121-334 8-213 (285)
8 cd03508 Delta4-sphingolipid-FA 99.8 1.9E-19 4.1E-24 172.6 17.9 113 116-230 3-119 (289)
9 cd03513 CrtW_beta-carotene-ket 99.8 3.3E-19 7.1E-24 165.4 15.4 76 156-232 31-108 (225)
10 cd03514 CrtR_beta-carotene-hyd 99.8 3.6E-19 7.9E-24 162.9 13.2 78 152-229 19-96 (207)
11 PLN02579 sphingolipid delta-4 99.8 3.5E-17 7.7E-22 159.1 19.8 116 110-229 26-147 (323)
12 cd03509 DesA_FADS-like Fatty a 99.7 3.3E-17 7.1E-22 157.1 16.9 84 160-244 30-115 (288)
13 PLN03198 delta6-acyl-lipid des 99.7 2.2E-17 4.7E-22 169.8 16.4 122 110-231 188-316 (526)
14 PLN03199 delta6-acyl-lipid des 99.7 2.3E-16 5E-21 161.0 20.8 118 111-228 114-240 (485)
15 cd03510 Rhizobitoxine-FADS-lik 99.7 1E-17 2.2E-22 149.6 8.7 91 138-229 2-93 (175)
16 PF00487 FA_desaturase: Fatty 99.7 1.7E-17 3.7E-22 149.2 8.7 78 154-231 3-80 (257)
17 cd03506 Delta6-FADS-like The D 99.7 3.3E-17 7.3E-22 148.8 9.4 72 160-231 3-74 (204)
18 cd01060 Membrane-FADS-like The 99.3 1.6E-12 3.4E-17 107.1 6.7 60 170-229 14-73 (122)
19 KOG4232 Delta 6-fatty acid des 99.3 4.6E-11 9.9E-16 118.4 12.7 114 110-228 100-215 (430)
20 cd03512 Alkane-hydroxylase Alk 99.1 1.4E-10 3.1E-15 112.6 6.9 153 153-334 68-224 (314)
21 KOG2987 Fatty acid desaturase 99.1 4.5E-10 9.7E-15 105.1 8.0 120 109-230 21-146 (324)
22 COG1398 OLE1 Fatty-acid desatu 96.3 0.097 2.1E-06 50.3 13.2 51 175-226 66-117 (289)
23 PLN02220 delta-9 acyl-lipid de 96.1 0.042 9.1E-07 53.5 9.9 47 179-226 81-127 (299)
24 cd03505 Delta9-FADS-like The D 94.1 0.21 4.6E-06 45.2 7.6 47 179-226 28-74 (178)
25 KOG1600 Fatty acid desaturase 90.1 1.4 3.1E-05 43.2 8.2 48 178-226 91-138 (321)
26 PLN02601 beta-carotene hydroxy 49.3 49 0.0011 32.1 6.3 82 121-217 176-259 (303)
27 PF13829 DUF4191: Domain of un 49.2 47 0.001 31.3 6.1 63 110-174 9-71 (224)
28 PF09396 Thrombin_light: Throm 47.4 8.1 0.00018 27.7 0.6 9 7-15 20-28 (49)
29 PF05313 Pox_P21: Poxvirus P21 35.5 39 0.00084 30.9 3.1 50 86-136 18-70 (189)
30 PF04298 Zn_peptidase_2: Putat 34.4 13 0.00028 34.9 -0.1 11 171-181 90-100 (222)
31 PLN02434 fatty acid hydroxylas 31.7 2.8E+02 0.006 26.3 8.4 12 210-221 121-132 (237)
32 PLN02505 omega-6 fatty acid de 24.8 1.7E+02 0.0036 29.7 5.9 37 162-198 260-296 (381)
33 cd03509 DesA_FADS-like Fatty a 21.6 6.7E+02 0.015 24.1 9.2 12 210-221 230-241 (288)
34 cd03512 Alkane-hydroxylase Alk 20.5 3.8E+02 0.0082 26.2 7.4 11 211-221 265-275 (314)
No 1
>PLN02498 omega-3 fatty acid desaturase
Probab=100.00 E-value=4.9e-76 Score=586.12 Aligned_cols=323 Identities=78% Similarity=1.359 Sum_probs=282.6
Q ss_pred CccccccccCCCCCCCCCCCCCCCCC---C-CccccccCccccccCCCCCcccCCCCCccCcceeEEeeccccCCCCCch
Q 019894 1 MASWVLSECGLKPLPHIFPRPRTGIN---P-SKARFLHSKKSITDLKLPSVKCSGDFSRDRNWGLKVSAPLRVAPLEGED 76 (334)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (334)
||+|||||||+||||++|++||+++. | ++.++.+.++..+...+. ..++++.|+|+|+++||+|++.+.+++|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 77 (450)
T PLN02498 1 MASWVLSECGLRPLPRIYPRPRTGFISKNNLSKFRFLPSSKSYKRLPFD--LFSRGCSRERNWALNVSAPLTVPSGEEE- 77 (450)
T ss_pred CchhhhhhccCcccccccCCCccccccCCCccccccccccccccccccc--cccccccccccceeeecccCcccCCCcc-
Confidence 99999999999999999999998862 2 245555554332122222 2346778999999999999986556554
Q ss_pred HHhhhhccCCCCCCCCcccccCCCCCCCCCCCCCHHHHHHhccccccccCchhHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 019894 77 EEERINGVNGIGNNKGVEEEEGSEFDPGAPPPFKLADIRAAIPKHCWVKDPWKSMSYVVRDVVVVFGLAAAAAYLNNWVV 156 (334)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~p~tl~dIr~aiPk~~f~~~~~rsl~~l~~d~~ii~~l~~la~~~~~w~l 156 (334)
|+++.+...| .+++.++++.+|||+|++|||++||+|||++|++|++.|+++|+++++++++++.++++|++
T Consensus 78 ~~~~~~~~~~--------~~~~~~~~~~~~p~~tl~dir~aIP~hcF~~s~~rs~~yv~~d~~vi~~l~~~a~~~~~w~~ 149 (450)
T PLN02498 78 EDEEGVNGVG--------EDEEGEFDPGAPPPFNLADIRAAIPKHCWVKNPWRSMSYVVRDVAVVFGLAAAAAYFNNWVV 149 (450)
T ss_pred hhhhhhhhcc--------cccccccCCCCCCCCCHHHHHHhCCHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 2221111222 12245589999999999999999999999999999999999999999888888887888999
Q ss_pred HHHHHHHHHHHHHHHHhhhhcccCCCCCCCchHHHHHHHHHHhhccCChhhhhHHHHhhccCCCCCCCCCccccCcHHHH
Q 019894 157 WPLYWAAQGTMFWALFVLGHDCGHGSFSNDHKLNSVVGHLLHSSILVPYHGWRISHRTHHQNHGHVENDESWHPLSEKIY 236 (334)
Q Consensus 157 w~l~~~l~G~~~~~lfvl~HDc~Hgs~fksk~lN~~vG~i~~~~ll~p~~~wr~~H~~HH~~tn~~~~D~~~~p~t~~~y 236 (334)
|+++|++||++++++++++|||||+++|+++++|+++|++++.++++||..||.+|+.||++||+.++||+|+|.++++|
T Consensus 150 wpl~w~~~G~~~~gL~vl~HDcgHgsf~~~k~lNd~vG~ll~~~ll~py~~Wr~sH~~HH~~Tn~~e~D~~~~P~t~~~y 229 (450)
T PLN02498 150 WPLYWFAQGTMFWALFVLGHDCGHGSFSNNPKLNSVVGHLLHSSILVPYHGWRISHRTHHQNHGHVENDESWHPLSEKIY 229 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccccccChHHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCCCCCCcchHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhhhhhHhhcccchhhhHHHHHhcCCCCCccCcCCCCCCCCcccchHHHHHHHHHHHHHHHHHHHHHHhchHHHHH
Q 019894 237 RTLDSATRFLRFKIPFPLLAYPFYLWSRSPGKTGSHFDPNSDLFVPSERKDVITSTVCWTAMAALLVGLSFVMGPMQLLK 316 (334)
Q Consensus 237 ~~l~~~~~~l~~~lp~~l~g~p~Yl~~r~~g~~~shF~p~s~lF~p~er~~Vi~S~~~~~a~~all~~ls~~~G~~~~L~ 316 (334)
+.++..++.+++.++++++|||+|++.+++++.++||+|++++|.++||.+|++|++|+++++++++.+++.+|++.+++
T Consensus 230 ~~l~~~~~~~~~~~~~~~~g~p~YL~~~~~g~~~sHF~p~s~lF~~~er~~V~~S~~~~~~~~~~l~~l~~~~G~~~~l~ 309 (450)
T PLN02498 230 KSLDKVTRTLRFTLPFPMLAYPFYLWSRSPGKKGSHFHPDSDLFVPKERKDVITSTACWTAMAALLVCLSFVMGPIQMLK 309 (450)
T ss_pred HhccccchHHHHHHHHHHHHHHHHHhhhccCCcCcccCCCcccCChhhhhheeeehHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 99887777777777888899999999999998899999999999999999999999999999999999999999999999
Q ss_pred HHHhhHHHhhheeEEEEC
Q 019894 317 LYGLPYWVNFFHLSFICF 334 (334)
Q Consensus 317 ~yliP~lv~~~WL~~vTy 334 (334)
+|++||+++|+||++|||
T Consensus 310 ~Y~vP~lv~~~WL~~iTy 327 (450)
T PLN02498 310 LYGIPYWIFVMWLDFVTY 327 (450)
T ss_pred HHHHHHHHHHHHHHHhhh
Confidence 999999999999999998
No 2
>PLN02505 omega-6 fatty acid desaturase
Probab=100.00 E-value=3.5e-48 Score=382.30 Aligned_cols=233 Identities=36% Similarity=0.663 Sum_probs=202.4
Q ss_pred CCCCCCCCCCHHHHHHhccccccccCchhHHHHHHHHHHHHHHHHHHHH-HH---h---HHHHHHHHHHHHHHHHHHHHh
Q 019894 101 FDPGAPPPFKLADIRAAIPKHCWVKDPWKSMSYVVRDVVVVFGLAAAAA-YL---N---NWVVWPLYWAAQGTMFWALFV 173 (334)
Q Consensus 101 ~~~~~p~p~tl~dIr~aiPk~~f~~~~~rsl~~l~~d~~ii~~l~~la~-~~---~---~w~lw~l~~~l~G~~~~~lfv 173 (334)
..|.++||+|++|||++||+||||+|++||+.++++|+++++++++++. +. + .|++|+++|+++|++++++|+
T Consensus 23 ~~~~~~p~~tl~~ir~aiP~~~f~~s~~rs~~~v~~d~~~i~~~~~~a~~~~~~~p~~~~~~l~~~~~~~~G~~~~~l~v 102 (381)
T PLN02505 23 RVPSSKPPFTLGDIKKAIPPHCFKRSVLRSFSYLVYDLLIAALLYYVATNYIPLLPGPLSYVAWPLYWAAQGCVLTGVWV 102 (381)
T ss_pred cCCCCCCCccHHHHHHhCCHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577889999999999999999999999999999999999988777655 22 2 356788999999999999999
Q ss_pred hhhcccCCCCCCCchHHHHHHHHHHhhccCChhhhhHHHHhhccCCCCCCCCCccccCcHHHHHhhhh-----hhhhhHh
Q 019894 174 LGHDCGHGSFSNDHKLNSVVGHLLHSSILVPYHGWRISHRTHHQNHGHVENDESWHPLSEKIYRTLDS-----ATRFLRF 248 (334)
Q Consensus 174 l~HDc~Hgs~fksk~lN~~vG~i~~~~ll~p~~~wr~~H~~HH~~tn~~~~D~~~~p~t~~~y~~l~~-----~~~~l~~ 248 (334)
++|||||+++|+++++|+++|++++.++++|+..||.+|+.||++||+.++|++|+|.++++++...+ ..+ +..
T Consensus 103 l~HDcgH~s~~~~~~lN~~vG~i~~~~ll~p~~~Wr~~H~~HH~~tn~~~~D~~~~P~~~~~~~~~~~~~~~p~~~-~~~ 181 (381)
T PLN02505 103 IAHECGHHAFSDYQWLDDTVGLVLHSALLVPYFSWKYSHRRHHSNTGSLERDEVFVPKKKSALPWYSKYLNNPPGR-LLH 181 (381)
T ss_pred HHHhhcchhhhCChHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCCCccccCcCHHHHhHHHHHhcChHHH-HHH
Confidence 99999999999999999999999998999999999999999999999999999999998877653211 122 122
Q ss_pred hcccchhhhHHHHHhcCCC----CCccCcCCCCCCCCcccchHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHhhHHH
Q 019894 249 KIPFPLLAYPFYLWSRSPG----KTGSHFDPNSDLFVPSERKDVITSTVCWTAMAALLVGLSFVMGPMQLLKLYGLPYWV 324 (334)
Q Consensus 249 ~lp~~l~g~p~Yl~~r~~g----~~~shF~p~s~lF~p~er~~Vi~S~~~~~a~~all~~ls~~~G~~~~L~~yliP~lv 324 (334)
......+|||+|++.+..+ ..++||+|.+++|.++||.+|++|++++++++++++.++..+|++.++++|++|+++
T Consensus 182 ~~~~~~~G~p~yl~~~~~g~~~~~~~~hf~p~s~lf~~~er~~v~~S~~~i~~~~~~l~~~~~~~G~~~~l~~y~vP~lv 261 (381)
T PLN02505 182 IVVQLTLGWPLYLAFNVSGRPYDRFACHFDPYSPIFNDRERLQIYISDAGILAVSFGLYRLAAAKGLAWVLCVYGVPLLI 261 (381)
T ss_pred HHHHHHhHHHHHHHhhhcCCCCCcccccCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 2223457899999865544 347999999999999999999999999999988888888889999999999999999
Q ss_pred hhheeEEEEC
Q 019894 325 NFFHLSFICF 334 (334)
Q Consensus 325 ~~~WL~~vTy 334 (334)
+++||+++||
T Consensus 262 ~~~wlv~ity 271 (381)
T PLN02505 262 VNAFLVLITY 271 (381)
T ss_pred HHHHHHHHHH
Confidence 9999999997
No 3
>PLN02598 omega-6 fatty acid desaturase
Probab=100.00 E-value=5.9e-47 Score=377.80 Aligned_cols=257 Identities=27% Similarity=0.477 Sum_probs=212.5
Q ss_pred cCcceeEEeeccccCCCCCchHHhhhhccCCCCCCCCcccccCCCCCCCCCCCCCHHHHHHhccccccccCchhHHHHHH
Q 019894 56 DRNWGLKVSAPLRVAPLEGEDEEERINGVNGIGNNKGVEEEEGSEFDPGAPPPFKLADIRAAIPKHCWVKDPWKSMSYVV 135 (334)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~p~tl~dIr~aiPk~~f~~~~~rsl~~l~ 135 (334)
.+.-.-+|++|++.+++ | |..|++|+|| |+|-+++ .||++|++||+++||+||||+|++|++.+++
T Consensus 39 ~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~------~~~~~~~-----~~~~~tl~~i~~aiP~~~F~~s~~rs~~~l~ 104 (421)
T PLN02598 39 RQGNIQAVAVPVAPPSA--E-ERKQLAESYG------FTQIGEP-----LPDNVTLKDVVKTLPKEVFEIDDFKAWKTVA 104 (421)
T ss_pred ccccceeeeecCCCCCH--H-HHHHHHHhhC------hhhcCCc-----CCCCcCHHHHHHhCCHHHcCCCHHHHHHHHH
Confidence 34455678889877654 2 4448999999 5673222 3577999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCchHHHHHHHHHHhhccCChhhhhHHHHhh
Q 019894 136 RDVVVVFGLAAAAAYLNNWVVWPLYWAAQGTMFWALFVLGHDCGHGSFSNDHKLNSVVGHLLHSSILVPYHGWRISHRTH 215 (334)
Q Consensus 136 ~d~~ii~~l~~la~~~~~w~lw~l~~~l~G~~~~~lfvl~HDc~Hgs~fksk~lN~~vG~i~~~~ll~p~~~wr~~H~~H 215 (334)
.+++++++.++ +....+|++|+++|+++|++++++|+++|||||+++|+++++|+++|+++++++++||..||.+|..|
T Consensus 105 ~~i~~~~~~~~-~~~~~~w~~~~l~~~~~G~~~~~l~vl~Hec~H~s~~~~~~lN~~vG~~~~~~ll~p~~~wr~~H~~H 183 (421)
T PLN02598 105 ITVTSYALGLA-AIAVAPWYLLPLAWAWLGTAITGFFVIGHDCGHNSFSKNQLVEDIVGTIAFTPLIYPFEPWRIKHNTH 183 (421)
T ss_pred HHHHHHHHHHH-HHHHhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 99988744433 33345688899999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCCccccCcHHHHHhhhhhhhhhHhhcccchhhhHHHHHhcCCCCCccCcCCCCCCCCcccchHHHHHHHHH
Q 019894 216 HQNHGHVENDESWHPLSEKIYRTLDSATRFLRFKIPFPLLAYPFYLWSRSPGKTGSHFDPNSDLFVPSERKDVITSTVCW 295 (334)
Q Consensus 216 H~~tn~~~~D~~~~p~t~~~y~~l~~~~~~l~~~lp~~l~g~p~Yl~~r~~g~~~shF~p~s~lF~p~er~~Vi~S~~~~ 295 (334)
|++||+.++|++++|.++++|++.+...+.+ +. .++| |.|++.+..+...+||+|+ .|+++||.++++|++++
T Consensus 184 H~~tn~~~~D~~~~p~t~~e~~~~~~~~r~l-~~---~~~G-P~yl~~~~~~~~~~hf~~~--~f~~~er~~v~~S~~~v 256 (421)
T PLN02598 184 HAHTNKLVMDTAWQPFRPHQFDNADPLRKAM-MR---AGMG-PLWWWASIGHWLFWHFDLN--KFRPQEVPRVKISLAAV 256 (421)
T ss_pred ccCcCCCCCCCCcCCcCHHHHhhcCHHHHHH-HH---HhHh-HHHHHHhhhcceeeccCcc--cCChhhhHHHHHHHHHH
Confidence 9999999999999999999998766544422 11 2456 8888876655567899886 49999999999999998
Q ss_pred HHHHH-HHHHHHHHhchHHHHHHHHhhHHHhhheeEEEEC
Q 019894 296 TAMAA-LLVGLSFVMGPMQLLKLYGLPYWVNFFHLSFICF 334 (334)
Q Consensus 296 ~a~~a-ll~~ls~~~G~~~~L~~yliP~lv~~~WL~~vTy 334 (334)
+++++ ++..+.+..|.+.++++|++||+++++||+++||
T Consensus 257 ~~~~~~~l~~~~~~~G~~~~~~~ylvP~Lv~~~wl~~it~ 296 (421)
T PLN02598 257 FAFMALGLPPLLYTTGPVGFVKWWLMPWLGYHFWMSTFTM 296 (421)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77543 3334566789999999999999999999999886
No 4
>PF11960 DUF3474: Domain of unknown function (DUF3474); InterPro: IPR021863 This presumed domain is functionally uncharacterised. This domain is found in bacteria and eukaryotes. This domain is typically between 126 to 140 amino acids in length. This domain is found associated with PF00487 from PFAM. ; GO: 0016717 oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water, 0055114 oxidation-reduction process
Probab=100.00 E-value=6.9e-39 Score=270.77 Aligned_cols=130 Identities=72% Similarity=1.204 Sum_probs=105.3
Q ss_pred CccccccccCCCCCCCCCCCCCCCC----CCCccccccCccccc-cCCCCCcccCCCCCccCcceeEEeeccccCCCCCc
Q 019894 1 MASWVLSECGLKPLPHIFPRPRTGI----NPSKARFLHSKKSIT-DLKLPSVKCSGDFSRDRNWGLKVSAPLRVAPLEGE 75 (334)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (334)
||+||||||||||||++|++||+++ +++++++.+++.... ++. ...+.+.++|+|+++||+|++++++++|
T Consensus 1 MAswVLSECGlrPLp~iy~~pr~~~~s~~~~~~~r~~~~~~~~~~~~~----~~~~~~~~~r~w~l~VsaP~~~~~~~~e 76 (136)
T PF11960_consen 1 MASWVLSECGLRPLPRIYPRPRTGFISSTNPSKLRFLPSSKSVNLDSS----SPSSSGFRRRNWALNVSAPLRVPSVEEE 76 (136)
T ss_pred CcceeecccCCCcCccccCCCCCcccccCCCCccccCCcccccccccc----ccccccccccCcceeeeccCcccccccc
Confidence 9999999999999999999999997 466777776654432 222 1234567889999999999999998777
Q ss_pred hHHhhhhccCCCCCCCCcccccCCCCCCCCCCCCCHHHHHHhccccccccCchhHHHHHHHHHHHHHHHH
Q 019894 76 DEEERINGVNGIGNNKGVEEEEGSEFDPGAPPPFKLADIRAAIPKHCWVKDPWKSMSYVVRDVVVVFGLA 145 (334)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~p~tl~dIr~aiPk~~f~~~~~rsl~~l~~d~~ii~~l~ 145 (334)
|++. ... .++++.+|||++||||||+|||++||+|||++|+|||++|+++|++++++|+
T Consensus 77 -~~~~--~~~--------~~~~~~~fdp~apPPFtL~dIraAIPkHCf~k~~~rS~sYv~rDv~iv~gLA 135 (136)
T PF11960_consen 77 -EEEV--SSN--------KEEEEEEFDPGAPPPFTLADIRAAIPKHCFVKSPWRSMSYVVRDVAIVFGLA 135 (136)
T ss_pred -hhhc--ccc--------ccccccccCCCCCCCcCHHHHHhhcChhhcCCChHHHHHHHHHHHHHHHHhc
Confidence 4331 111 1334677999999999999999999999999999999999999999988764
No 5
>cd03507 Delta12-FADS-like The Delta12 Fatty Acid Desaturase (Delta12-FADS)-like CD includes the integral-membrane enzymes, delta-12 acyl-lipid desaturases, oleate 12-hydroxylases, omega3 and omega6 fatty acid desaturases, and other related proteins, found in a wide range of organisms including higher plants, green algae, diatoms, nematodes, fungi, and bacteria. The expression of these proteins appears to be temperature dependent: decreases in temperature result in increased levels of fatty acid desaturation within membrane lipids subsequently altering cell membrane fluidity. An important enzyme for the production of polyunsaturates in plants is the oleate delta-12 desaturase (Arabidopsis FAD2) of the endoplasmic reticulum. This enzyme accepts l-acyl-2-oleoyl-sn-glycero-3-phosphocholine as substrate and requires NADH:cytochrome b oxidoreductase, cytochrome b, and oxygen for activity. FAD2 converts oleate(18:1) to linoleate (18:2) and is closely related to oleate 12-hydroxylase which cat
Probab=99.95 E-value=6.6e-28 Score=222.55 Aligned_cols=115 Identities=52% Similarity=1.081 Sum_probs=105.3
Q ss_pred cCchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCchHHHHHHHHHHhhccCC
Q 019894 125 KDPWKSMSYVVRDVVVVFGLAAAAAYLNNWVVWPLYWAAQGTMFWALFVLGHDCGHGSFSNDHKLNSVVGHLLHSSILVP 204 (334)
Q Consensus 125 ~~~~rsl~~l~~d~~ii~~l~~la~~~~~w~lw~l~~~l~G~~~~~lfvl~HDc~Hgs~fksk~lN~~vG~i~~~~ll~p 204 (334)
+|+++++.++++|+++++++++++....+|++++++++++|+.++++++++|||+|++++|+|++|+++|.++++++++|
T Consensus 1 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~l~He~~H~~~~~~~~~N~~~g~~~~~~~~~p 80 (222)
T cd03507 1 RSLFRSLSYLAPDILLLALLALAASLLLSWWLWPLYWIVQGLFLTGLFVLGHDCGHGSFSDNRRLNDIVGHILHSPLLVP 80 (222)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhhccCCcccccchhHHHHHHHHHHHHHhCC
Confidence 57899999999999998887777655567888999999999999999999999999999999999999999999999999
Q ss_pred hhhhhHHHHhhccCCCCCCCCCccccCcHHHHHhh
Q 019894 205 YHGWRISHRTHHQNHGHVENDESWHPLSEKIYRTL 239 (334)
Q Consensus 205 ~~~wr~~H~~HH~~tn~~~~D~~~~p~t~~~y~~l 239 (334)
+..||..|..||++||+.++|+|+.|.+++++.+.
T Consensus 81 ~~~w~~~H~~HH~~~~~~~~D~~~~p~~~~~~~~~ 115 (222)
T cd03507 81 YHSWRISHNRHHAHTGNLEGDEVWVPVTEEEYAEL 115 (222)
T ss_pred hHHHHHHHHHHHhccCCCCCCCcccCcCHHHhhcc
Confidence 99999999999999999999999999888776543
No 6
>COG3239 DesA Fatty acid desaturase [Lipid metabolism]
Probab=99.94 E-value=4.6e-26 Score=222.83 Aligned_cols=209 Identities=27% Similarity=0.402 Sum_probs=141.3
Q ss_pred CCHHHHHHhccccccccCchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCch
Q 019894 109 FKLADIRAAIPKHCWVKDPWKSMSYVVRDVVVVFGLAAAAAYLNNWVVWPLYWAAQGTMFWALFVLGHDCGHGSFSNDHK 188 (334)
Q Consensus 109 ~tl~dIr~aiPk~~f~~~~~rsl~~l~~d~~ii~~l~~la~~~~~w~lw~l~~~l~G~~~~~lfvl~HDc~Hgs~fksk~ 188 (334)
.+++++++.+|++|+++|..+....++...++++.+.....++.+|+.+++.++++|++++++++++|||+||+++|++|
T Consensus 16 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~l~~~~~~~~l~~~~~v~Hd~~Hgs~~~~r~ 95 (343)
T COG3239 16 APLDSIRARLPKPRTRRDAIAILITFLALAGLWALLALSLAYWPSWWLLPLALLLAGLLLTGLFSVGHDCGHGSFFKNRW 95 (343)
T ss_pred cchhhHHhhCccccccccHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhhccccchhhhhh
Confidence 46889999999999999988888887777777666666666666688889999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccCChhhhhHHHHhhccCCCCCCCCCccccCcHHHHHhhhhhhhhhHhhcccchhhhHHHHHhcCCCC
Q 019894 189 LNSVVGHLLHSSILVPYHGWRISHRTHHQNHGHVENDESWHPLSEKIYRTLDSATRFLRFKIPFPLLAYPFYLWSRSPGK 268 (334)
Q Consensus 189 lN~~vG~i~~~~ll~p~~~wr~~H~~HH~~tn~~~~D~~~~p~t~~~y~~l~~~~~~l~~~lp~~l~g~p~Yl~~r~~g~ 268 (334)
+||++|++++++.+.|+..||.+|.+||++||+.++|++. |+...+..+... +.+.++-.+.+.+.....+
T Consensus 96 iNd~ig~l~~~~~~~p~~~wR~~H~~HH~~t~~~~~d~~~-------~~~~~~~~~~~~--l~~~~i~~~~~~~~~~~~~ 166 (343)
T COG3239 96 INDLIGHLAAALLLAPPVFWRISHNQHHAHTNILDDDPET-------YVSYPEQLRRGP--LRFQLIRLPWLAFGFGPRW 166 (343)
T ss_pred HHHHHHHHHHHHHhcChhhhhhhHHHhhcccCCCCCCHHH-------HHhCchhhhhhh--HHHHHHHHHHHHHhhhhhh
Confidence 9999999999998899999999999999999999988542 222211111000 0001111222222333333
Q ss_pred CccCcCCCCCCCCcccchHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHH-HhhHHHhhheeEEEE
Q 019894 269 TGSHFDPNSDLFVPSERKDVITSTVCWTAMAALLVGLSFVMGPMQLLKLY-GLPYWVNFFHLSFIC 333 (334)
Q Consensus 269 ~~shF~p~s~lF~p~er~~Vi~S~~~~~a~~all~~ls~~~G~~~~L~~y-liP~lv~~~WL~~vT 333 (334)
...++...+..+.+.++.+.....+...+.+.+...+.. ..+| ++|+++++.|++.+|
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l-------~~~~~~~p~l~~~~~~~~~~ 225 (343)
T COG3239 167 ALLHFELLEKLFKRSGKAPKAAALATLLAAIGLAALLAL-------AFFWGLIPLLLVGLWLVLVL 225 (343)
T ss_pred hhhhhhhhhhccCCcccchHHHHHHHHHHHHHHHHHHHH-------HHHHhHhHHHHHHHHHHHHH
Confidence 344555545556665555555555555444332222111 2223 466666666655443
No 7
>cd03511 Rhizopine-oxygenase-like This CD includes the putative hydrocarbon oxygenase, MocD, a bacterial rhizopine (3-O-methyl-scyllo-inosamine, 3-O-MSI) oxygenase, and other related proteins. It has been proposed that MocD, MocE (Rieske-like ferredoxin), and MocF (ferredoxin reductase) under the regulation of MocR, act in concert to form a ferredoxin oxygenase system that demethylates 3-O-MSI to form scyllo-inosamine. This domain family appears to be structurally related to the membrane fatty acid desaturases and the alkane hydroxylases. They all share in common extensive hydrophobic regions that would be capable of spanning the membrane bilayer at least twice. Comparison of sequences also reveals the existence of three regions of conserved histidine cluster motifs that contain eight histidine residues: HXXXH, HXXHH, and HXXHH. These histidine residues are reported to be catalytically essential and proposed to be the ligands for the iron atoms contained within homologs, stearoyl CoA d
Probab=99.93 E-value=1.9e-25 Score=212.40 Aligned_cols=204 Identities=21% Similarity=0.273 Sum_probs=141.8
Q ss_pred cccccCchhHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCchHHHHHHHHHHh
Q 019894 121 HCWVKDPWKSMSYVVRDVVVVFGLAAAAAYL-NNWVVWPLYWAAQGTMFWALFVLGHDCGHGSFSNDHKLNSVVGHLLHS 199 (334)
Q Consensus 121 ~~f~~~~~rsl~~l~~d~~ii~~l~~la~~~-~~w~lw~l~~~l~G~~~~~lfvl~HDc~Hgs~fksk~lN~~vG~i~~~ 199 (334)
++.|+|+++++..++.++++++++.+++... ++|+.++ ..+++|+.+.++++++|||+|++++++|++|+++|.+++.
T Consensus 8 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~He~~H~~~~~~~~~N~~~g~l~~~ 86 (285)
T cd03511 8 QLMQRSDAPGLLDTALWLGALAVSGILIAWTWGSWWALP-AFLVYGVLYAALFARWHECVHGTAFATRWLNDAVGQIAGL 86 (285)
T ss_pred HHhCCcchhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH-HHHHHHHHHHHHHHHHHHhhcccccCCchHHHHHHHHHHH
Confidence 5678999999999999998876665554433 4444444 4477899999999999999999999999999999999999
Q ss_pred hccCChhhhhHHHHhhccCCCCCCCCCccc-cCcHHHHHhhhhhhhhhHhhcccchhhhHHHHHhcCCCCCccCcCCCCC
Q 019894 200 SILVPYHGWRISHRTHHQNHGHVENDESWH-PLSEKIYRTLDSATRFLRFKIPFPLLAYPFYLWSRSPGKTGSHFDPNSD 278 (334)
Q Consensus 200 ~ll~p~~~wr~~H~~HH~~tn~~~~D~~~~-p~t~~~y~~l~~~~~~l~~~lp~~l~g~p~Yl~~r~~g~~~shF~p~s~ 278 (334)
+++.|+..||..|..||+++|+.++|||.. +.++...+.+....+ .+. .......++....+ .....+ ..
T Consensus 87 ~~~~~~~~~~~~H~~HH~~~~~~~~Dpd~~~~~~~~~~~~~~~~~g-----~~~-~~~~l~~~~~~~~~--~~~~~~-~~ 157 (285)
T cd03511 87 MILLPPDFFRWSHARHHRYTQIPGRDPELAVPRPPTLREYLLALSG-----LPY-WWGKLRTVFRHAFG--AVSEAE-KP 157 (285)
T ss_pred HhcCChHHHHHHHHHHhcCcCCCCCCCCCCCCCchHHHHHHHHHhC-----hHH-HHHHHHHHHHHHhc--cccccc-CC
Confidence 999999999999999999999999999853 333222111111000 000 00000000000000 011111 12
Q ss_pred CCCcccchHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHhhHHHhhheeEEEEC
Q 019894 279 LFVPSERKDVITSTVCWTAMAALLVGLSFVMGPMQLLKLYGLPYWVNFFHLSFICF 334 (334)
Q Consensus 279 lF~p~er~~Vi~S~~~~~a~~all~~ls~~~G~~~~L~~yliP~lv~~~WL~~vTy 334 (334)
.+.++++++++.+.++++++.++++++++..|++.++++|++|+++++.|+.++||
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~wllP~l~~~~~~~~~~~ 213 (285)
T cd03511 158 FIPAEERPKVVREARAMLAVYAGLIALSLYLGSPLLVLVWGLPLLLGQPILRLFLL 213 (285)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22335677888888888777777777777889999999999999999888876554
No 8
>cd03508 Delta4-sphingolipid-FADS-like The Delta4-sphingolipid Fatty Acid Desaturase (Delta4-sphingolipid-FADS)-like CD includes the integral-membrane enzymes, dihydroceramide Delta-4 desaturase, involved in the synthesis of sphingosine; and the human membrane fatty acid (lipid) desaturase (MLD), reported to modulate biosynthesis of the epidermal growth factor receptor; and other related proteins. These proteins are found in various eukaryotes including vertebrates, higher plants, and fungi. Studies show that MLD is localized to the endoplasmic reticulum. As with other members of this superfamily, this domain family has extensive hydrophobic regions that would be capable of spanning the membrane bilayer at least twice. Comparison of sequences also reveals the existence of three regions of conserved histidine cluster motifs that contain eight histidine residues: HXXXH, HXXHH, and HXXHH. These histidine residues are reported to be catalytically essential and proposed to be the ligands for
Probab=99.83 E-value=1.9e-19 Score=172.58 Aligned_cols=113 Identities=20% Similarity=0.238 Sum_probs=90.4
Q ss_pred Hhcc--ccccccCchhHHHHHHHHHHHHHHHHHHHHHHhHHHHH-HHHHHHHHHHHHHHHhhhhcccCCCCCCCchHHHH
Q 019894 116 AAIP--KHCWVKDPWKSMSYVVRDVVVVFGLAAAAAYLNNWVVW-PLYWAAQGTMFWALFVLGHDCGHGSFSNDHKLNSV 192 (334)
Q Consensus 116 ~aiP--k~~f~~~~~rsl~~l~~d~~ii~~l~~la~~~~~w~lw-~l~~~l~G~~~~~lfvl~HDc~Hgs~fksk~lN~~ 192 (334)
++-| |++|++|+......++..+++++++.++ ...+|+.. ++.+++.|+.+.++++++|||+|+++||++++|++
T Consensus 3 ~~~pei~~L~~~~~~~~~~~~~~v~~~~~~~~~l--~~~sw~~~ll~a~vi~~~~~~~l~~l~Hd~~H~~~f~~~~~N~~ 80 (289)
T cd03508 3 AKYPEIKKLFGPDPLTKWVVLGVVLLQIITAYLL--RDSSWWKILLVAYFFGGTINHSLFLAIHEISHNLAFGKPLWNRL 80 (289)
T ss_pred ccchHHHHhcCCCcchHHHHHHHHHHHHHHHHHH--hcCcHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhcCChHHHHH
Confidence 4455 5889999998877766666555443222 12355443 45556777888999999999999999999999999
Q ss_pred HHHHHHhhccCChh-hhhHHHHhhccCCCCCCCCCcccc
Q 019894 193 VGHLLHSSILVPYH-GWRISHRTHHQNHGHVENDESWHP 230 (334)
Q Consensus 193 vG~i~~~~ll~p~~-~wr~~H~~HH~~tn~~~~D~~~~p 230 (334)
+|.+++++++.|+. .||..|..||+++|..+.|||+.+
T Consensus 81 ~g~~~~~~~g~p~~~~~r~~H~~HH~~~n~~~~DpDi~~ 119 (289)
T cd03508 81 FGIFANLPIGVPYSISFKKYHLEHHRYLGEDGLDTDIPT 119 (289)
T ss_pred HHHHHHHHhcCChhhHHHHHHHHhccCCCCCCCCCCcch
Confidence 99999899999999 699999999999999899999865
No 9
>cd03513 CrtW_beta-carotene-ketolase Beta-carotene ketolase/oxygenase (CrtW, also known as CrtO), the carotenoid astaxanthin biosynthetic enzyme, initially catalyzes the addition of two keto groups to carbons C4 and C4' of beta-carotene. Carotenoids are important natural pigments produced by many microorganisms and plants. Astaxanthin is reported to be an antioxidant, an anti-cancer agent, and an immune system stimulant. A number of bacteria and green algae can convert beta-carotene into astaxanthin by using several ketocarotenoids as intermediates and CrtW and a beta-carotene hydroxylase (CrtZ). CrtW initially converts beta-carotene to canthaxanthin via echinenone, and CrtZ initially mediates the conversion of beta-carotene to zeaxanthin via beta-cryptoxanthin. After a few more intermediates are formed, CrtW and CrtZ act in combination to produce astaxanthin. Sequences of this domain family appear to be structurally related to membrane fatty acid desaturases and alkane hydroxylases. Th
Probab=99.81 E-value=3.3e-19 Score=165.38 Aligned_cols=76 Identities=25% Similarity=0.385 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcccCCCCC-CCchHHHHHHHHHH-hhccCChhhhhHHHHhhccCCCCCCCCCccccCc
Q 019894 156 VWPLYWAAQGTMFWALFVLGHDCGHGSFS-NDHKLNSVVGHLLH-SSILVPYHGWRISHRTHHQNHGHVENDESWHPLS 232 (334)
Q Consensus 156 lw~l~~~l~G~~~~~lfvl~HDc~Hgs~f-ksk~lN~~vG~i~~-~~ll~p~~~wr~~H~~HH~~tn~~~~D~~~~p~t 232 (334)
+.++.++++|+..+++|+++|||+|++++ +++++|+++|.++. ++.+.|+..||.+|.+||+++|+. +|||+.+.+
T Consensus 31 ~~~~~~~~~g~l~~glfi~~HDa~Hg~~~~~~~~~N~~iG~~~~~l~~g~~~~~~~~~H~~HH~~~~~~-~DpD~~~~~ 108 (225)
T cd03513 31 LIAAVVLLQTFLHTGLFIIAHDAMHGSLAPGNPRLNRAIGRLCLFLYAGFSYDRLLRKHHLHHRHPGTA-KDPDFHKGN 108 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhccccCCchHHHHHHHHHHHHhhcCCHHHHHHHHHHHcCCCCCC-CCCCCCCCC
Confidence 34455678999999999999999999999 79999999999995 778999999999999999999997 999987754
No 10
>cd03514 CrtR_beta-carotene-hydroxylase Beta-carotene hydroxylase (CrtR), the carotenoid zeaxanthin biosynthetic enzyme catalyzes the addition of hydroxyl groups to the beta-ionone rings of beta-carotene to form zeaxanthin and is found in bacteria and red algae. Carotenoids are important natural pigments; zeaxanthin and lutein are the only dietary carotenoids that accumulate in the macular region of the retina and lens. It is proposed that these carotenoids protect ocular tissues against photooxidative damage. CrtR does not show overall amino acid sequence similarity to the beta-carotene hydroxylases similar to CrtZ, an astaxanthin biosynthetic beta-carotene hydroxylase. However, CrtR does show sequence similarity to the green alga, Haematococcus pluvialis, beta-carotene ketolase (CrtW), which converts beta-carotene to canthaxanthin. Sequences of the CrtR_beta-carotene-hydroxylase domain family, as well as, the CrtW_beta-carotene-ketolase domain family appear to be structurally related
Probab=99.80 E-value=3.6e-19 Score=162.86 Aligned_cols=78 Identities=18% Similarity=0.249 Sum_probs=70.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCchHHHHHHHHHHhhccCChhhhhHHHHhhccCCCCCCCCCccc
Q 019894 152 NNWVVWPLYWAAQGTMFWALFVLGHDCGHGSFSNDHKLNSVVGHLLHSSILVPYHGWRISHRTHHQNHGHVENDESWH 229 (334)
Q Consensus 152 ~~w~lw~l~~~l~G~~~~~lfvl~HDc~Hgs~fksk~lN~~vG~i~~~~ll~p~~~wr~~H~~HH~~tn~~~~D~~~~ 229 (334)
..|+.+++.+++.|+...++++++|||+|++++++|++|+++|.+++++++.|+..||.+|..||+++|+.++|||..
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~Hda~H~~~~~~~~~N~~~g~~~~~~~~~~~~~w~~~H~~HH~~~~~~~~DpD~~ 96 (207)
T cd03514 19 ISYLPLWVCFILNTLSLHLAGTVIHDASHKAASRNRWINELIGHVSAFFLGFPFPVFRRVHMQHHAHTNDPEKDPDHF 96 (207)
T ss_pred HccchHHHHHHHHHHHHHHHHHHHHHcccccccCCccHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCcCcCCcCccHH
Confidence 345555666677888999999999999999999999999999999999999999999999999999999999999863
No 11
>PLN02579 sphingolipid delta-4 desaturase
Probab=99.76 E-value=3.5e-17 Score=159.13 Aligned_cols=116 Identities=23% Similarity=0.315 Sum_probs=86.1
Q ss_pred CHHHHHHhcc--ccccccCchhHHHHHHHHHHHHHHHHHHHHHH--hHHHHHHH-HHHHHHHHHHHHHhhhhcccCCCCC
Q 019894 110 KLADIRAAIP--KHCWVKDPWKSMSYVVRDVVVVFGLAAAAAYL--NNWVVWPL-YWAAQGTMFWALFVLGHDCGHGSFS 184 (334)
Q Consensus 110 tl~dIr~aiP--k~~f~~~~~rsl~~l~~d~~ii~~l~~la~~~--~~w~lw~l-~~~l~G~~~~~lfvl~HDc~Hgs~f 184 (334)
..|+|.++.| ++++..|+..-...++ ++++.+ +++.++ .+|+.+++ .+++.|+...++|+++|||+|+++|
T Consensus 26 rr~~il~~ype~~~l~~~d~~~~~k~~~---~v~~~~-~~~~l~~~~~w~~~l~~a~~~~g~~~~~lf~~~HD~~Hg~~f 101 (323)
T PLN02579 26 RRREILSKYPQIKELFGPDPWAFPKIAA---VVLLQL-CTATLLHDAGWPKILLVAYFFGGFLNHNLFLAIHELSHNLAF 101 (323)
T ss_pred HHHHHHHhchHhhcccCCCchHHHHHHH---HHHHHH-HHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhc
Confidence 4567767778 4678666653322211 111112 222222 46766555 4567788888999999999999999
Q ss_pred CCchHHHHHHHHHHhhccCChh-hhhHHHHhhccCCCCCCCCCccc
Q 019894 185 NDHKLNSVVGHLLHSSILVPYH-GWRISHRTHHQNHGHVENDESWH 229 (334)
Q Consensus 185 ksk~lN~~vG~i~~~~ll~p~~-~wr~~H~~HH~~tn~~~~D~~~~ 229 (334)
|++++|+++|.+++++++.|+. .||..|..||+++|..+.|+|..
T Consensus 102 ~~~~~N~~lg~~~~l~~g~~~~~~~~~~H~~HH~~~n~~~~D~Di~ 147 (323)
T PLN02579 102 KTPVYNRWLGIFANLPIGIPMSVTFQKYHLEHHRFQGVDGIDMDIP 147 (323)
T ss_pred CCHHHHHHHHHHHHHhhcCCHhHHHHHHHHHHccCCCCCCCCCCCC
Confidence 9999999999999999999998 69999999999999989999953
No 12
>cd03509 DesA_FADS-like Fatty acid desaturase protein family subgroup, a delta-12 acyl-lipid desaturase-like, DesA-like, yet uncharacterized subgroup of membrane fatty acid desaturase proteins found in alpha-, beta-, and gamma-proteobacteria. Sequences of this domain family appear to be structurally related to membrane fatty acid desaturases and alkane hydroxylases. They all share in common extensive hydrophobic regions that would be capable of spanning the membrane bilayer at least twice. Comparison of these sequences also reveals three regions of conserved histidine cluster motifs that contain eight histidine residues: HXXXH, HXXHH, and HXXHH. These histidine residues are reported to be catalytically essential and proposed to be the ligands for the iron atoms contained within homologs, stearoyl CoA desaturase and alkane hydroxylase.
Probab=99.75 E-value=3.3e-17 Score=157.12 Aligned_cols=84 Identities=20% Similarity=0.201 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHHHhhhhcccCCCCCCCchHHHHHHHHHHhhccCChhhhhHHHHhhccCCC--CCCCCCccccCcHHHHH
Q 019894 160 YWAAQGTMFWALFVLGHDCGHGSFSNDHKLNSVVGHLLHSSILVPYHGWRISHRTHHQNHG--HVENDESWHPLSEKIYR 237 (334)
Q Consensus 160 ~~~l~G~~~~~lfvl~HDc~Hgs~fksk~lN~~vG~i~~~~ll~p~~~wr~~H~~HH~~tn--~~~~D~~~~p~t~~~y~ 237 (334)
+.+++|......++++|||+|+++||+|++|+++|.++ +.++.|+..||.+|..||++|| +.++|||....++++++
T Consensus 30 ~~~~~~~~~~~~~~l~Hd~~Hg~~~~~~~~N~~~g~~~-~~l~~p~~~wr~~H~~HH~~~nl~~~~~Dpd~~~~~~~~~~ 108 (288)
T cd03509 30 ATLLLIPLAALHSSLQHELLHGHPTRSRWVNEALGYPP-LALWYPYTRYRDTHLAHHRDEDLTDPGDDPESNYLSPEQWA 108 (288)
T ss_pred HHHHHHHHHHHHHHHHHHhhccCcccChHHHHHHHHHH-HHHhcCHHHHHHHHHHHcCCCCCCCCCCCCccceecHHHHh
Confidence 34667777777789999999999999999999999885 4566999999999999999999 44689998777778887
Q ss_pred hhhhhhh
Q 019894 238 TLDSATR 244 (334)
Q Consensus 238 ~l~~~~~ 244 (334)
.+....+
T Consensus 109 ~~~~~~r 115 (288)
T cd03509 109 RLPRWQR 115 (288)
T ss_pred hCcHHHH
Confidence 7665544
No 13
>PLN03198 delta6-acyl-lipid desaturase; Provisional
Probab=99.75 E-value=2.2e-17 Score=169.79 Aligned_cols=122 Identities=18% Similarity=0.177 Sum_probs=98.0
Q ss_pred CHHHHHHhcc-ccccccCchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCch
Q 019894 110 KLADIRAAIP-KHCWVKDPWKSMSYVVRDVVVVFGLAAAAAYLNNWVVWPLYWAAQGTMFWALFVLGHDCGHGSFSNDHK 188 (334)
Q Consensus 110 tl~dIr~aiP-k~~f~~~~~rsl~~l~~d~~ii~~l~~la~~~~~w~lw~l~~~l~G~~~~~lfvl~HDc~Hgs~fksk~ 188 (334)
.++++|+.+- ..+|++++.+....++..++++++++++.+...+++...+..+++|+++..+++++|||+|++++++++
T Consensus 188 dy~~Lr~~~~~~G~fk~~~~~y~~~l~~~i~l~a~~~~~~~~~~~~~~~ll~a~llgl~~~q~g~l~HD~~H~s~~~~~~ 267 (526)
T PLN03198 188 DFRDLRALFLREQLFKSSKLYYVFKLLTNIAIFAASIAIICCSKSISAVLASACMMALCFQQCGWLSHDFLHNQVFETRW 267 (526)
T ss_pred hHHHHHHHHHhccccccCcceeHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCcH
Confidence 4678888865 589999998877777766666555554443333333345556778999999999999999999999999
Q ss_pred HHHHHHHHHH-hhccCChhhhhHHHHhhccCCCCCC-----CCCccccC
Q 019894 189 LNSVVGHLLH-SSILVPYHGWRISHRTHHQNHGHVE-----NDESWHPL 231 (334)
Q Consensus 189 lN~~vG~i~~-~~ll~p~~~wr~~H~~HH~~tn~~~-----~D~~~~p~ 231 (334)
+|+++|.+++ ++++.|+..||..|+.||.+||..+ .|||....
T Consensus 268 ~n~~~g~~~~~~~~G~s~~~W~~~Hn~HH~~tN~~~~~~~~~DpDI~~~ 316 (526)
T PLN03198 268 LNEVVGYLIGNAVLGFSTGWWKEKHNLHHAAPNECDQLYQPIDEDIDTL 316 (526)
T ss_pred HHHHHHHHHHHhhcCCCHHHHHHHHHHhccCCCCCCccCCCCCCCcCcc
Confidence 9999999976 6789999999999999999999987 69996444
No 14
>PLN03199 delta6-acyl-lipid desaturase-like protein; Provisional
Probab=99.73 E-value=2.3e-16 Score=161.01 Aligned_cols=118 Identities=15% Similarity=0.117 Sum_probs=95.8
Q ss_pred HHHHHHhcc-ccccccCchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCchH
Q 019894 111 LADIRAAIP-KHCWVKDPWKSMSYVVRDVVVVFGLAAAAAYLNNWVVWPLYWAAQGTMFWALFVLGHDCGHGSFSNDHKL 189 (334)
Q Consensus 111 l~dIr~aiP-k~~f~~~~~rsl~~l~~d~~ii~~l~~la~~~~~w~lw~l~~~l~G~~~~~lfvl~HDc~Hgs~fksk~l 189 (334)
++++++.+. ..+|++++......++..++++++.+++..+..++++..+.++++|+.+.+++.++|||+|+++++++++
T Consensus 114 y~~L~~~v~~~g~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~aillg~~~~~~g~l~HDa~H~~~~~~~~~ 193 (485)
T PLN03199 114 YRDLRAKLIMMGMFKSNKMFYAYKCLFNMAIWAAACALVFYSDRFAMHIASALLLGLFFQQCGWLAHDFLHHQVFKKRKH 193 (485)
T ss_pred HHHHHHHHHHcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhCCchH
Confidence 678898887 4889999877655555555555554444444456666667778899999999899999999999999999
Q ss_pred HHHHHHHHH-hhccCChhhhhHHHHhhccCCCCC-------CCCCcc
Q 019894 190 NSVVGHLLH-SSILVPYHGWRISHRTHHQNHGHV-------ENDESW 228 (334)
Q Consensus 190 N~~vG~i~~-~~ll~p~~~wr~~H~~HH~~tn~~-------~~D~~~ 228 (334)
|+++|.+++ ++++.+...||..|+.||.+||.. +.|||.
T Consensus 194 N~~~g~~~g~l~~G~S~~wW~~~Hn~HH~~tN~~~~~~~~~~~DPDI 240 (485)
T PLN03199 194 GDLGGIFWGDLMQGFSMQWWKNKHNGHHAVPNLHCSSADAQDGDPDI 240 (485)
T ss_pred HHHHHHHHHHhccCCChHHHHHHHhhhhcCcCcCccccCCCCCCCCC
Confidence 999998886 678999999999999999999973 689986
No 15
>cd03510 Rhizobitoxine-FADS-like This CD includes the dihydrorhizobitoxine fatty acid desaturase (RtxC) characterized in Bradyrhizobium japonicum USDA110, and other related proteins. Dihydrorhizobitoxine desaturase is reported to be involved in the final step of rhizobitoxine biosynthesis. This domain family appears to be structurally related to the membrane fatty acid desaturases and the alkane hydroxylases. They all share in common extensive hydrophobic regions that would be capable of spanning the membrane bilayer at least twice. Comparison of sequences also reveals the existence of three regions of conserved histidine cluster motifs that contain eight histidine residues: HXXXH, HXX(X)HH, and HXXHH. These histidine residues are reported to be catalytically essential and proposed to be the ligands for the iron atoms contained within homologs, stearoyl CoA desaturase and alkane hydroxylase.
Probab=99.72 E-value=1e-17 Score=149.62 Aligned_cols=91 Identities=30% Similarity=0.438 Sum_probs=80.9
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCchHHHHHHHHH-HhhccCChhhhhHHHHhhc
Q 019894 138 VVVVFGLAAAAAYLNNWVVWPLYWAAQGTMFWALFVLGHDCGHGSFSNDHKLNSVVGHLL-HSSILVPYHGWRISHRTHH 216 (334)
Q Consensus 138 ~~ii~~l~~la~~~~~w~lw~l~~~l~G~~~~~lfvl~HDc~Hgs~fksk~lN~~vG~i~-~~~ll~p~~~wr~~H~~HH 216 (334)
++++++.++++.+.++|+++++.++++|..+.++++++|||+|++++|++++|+++|.++ +++++.|+..||..|..||
T Consensus 2 w~~i~~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~~l~Hea~H~~l~~~~~~N~~~g~~~~~~p~~~~~~~~r~~H~~HH 81 (175)
T cd03510 2 WLVIAAAVALALAWPNWLAYLLAVLLIGARQRALAILMHDAAHGLLFRNRRLNDFLGNWLAAVPIFQSLAAYRRSHLKHH 81 (175)
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHhhhhCCHHHHHHHHHHHh
Confidence 455556666666678888888888999999999999999999999999999999999876 4789999999999999999
Q ss_pred cCCCCCCCCCccc
Q 019894 217 QNHGHVENDESWH 229 (334)
Q Consensus 217 ~~tn~~~~D~~~~ 229 (334)
+++|+ ++|||..
T Consensus 82 ~~~~~-~~Dpd~~ 93 (175)
T cd03510 82 RHLGT-EDDPDLA 93 (175)
T ss_pred CccCC-CCCCcHH
Confidence 99999 8999974
No 16
>PF00487 FA_desaturase: Fatty acid desaturase This entry is only a subset of the Pfam family.; InterPro: IPR005804 Fatty acid desaturases are enzymes that catalyse the insertion of a double bond at the delta position of fatty acids. There seem to be two distinct families of fatty acid desaturases which do not seem to be evolutionary related. Family 1 is composed of: Stearoyl-CoA desaturase (SCD) (1.14.19.1 from EC) []. Family 2 is composed of: Bacterial fatty acid desaturases. Plant stearoyl-acyl-carrier-protein desaturase (1.14.19.1 from EC) [], this enzyme catalyzes the introduction of a double bond at the delta(9) position of steraoyl-ACP to produce oleoyl-ACP. This enzyme is responsible for the conversion of saturated fatty acids to unsaturated fatty acids in the synthesis of vegetable oils. Cyanobacterial DesA [], an enzyme that can introduce a second cis double bond at the delta(12) position of fatty acid bound to membranes glycerolipids. DesA is involved in chilling tolerance; the phase transition temperature of lipids of cellular membranes being dependent on the degree of unsaturation of fatty acids of the membrane lipids. This entry contains fatty acid desaturases belonging to Family 1. ; GO: 0006629 lipid metabolic process
Probab=99.71 E-value=1.7e-17 Score=149.16 Aligned_cols=78 Identities=38% Similarity=0.643 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCchHHHHHHHHHHhhccCChhhhhHHHHhhccCCCCCCCCCccccC
Q 019894 154 WVVWPLYWAAQGTMFWALFVLGHDCGHGSFSNDHKLNSVVGHLLHSSILVPYHGWRISHRTHHQNHGHVENDESWHPL 231 (334)
Q Consensus 154 w~lw~l~~~l~G~~~~~lfvl~HDc~Hgs~fksk~lN~~vG~i~~~~ll~p~~~wr~~H~~HH~~tn~~~~D~~~~p~ 231 (334)
|+.++++.++.|..+.+++.++|||+|+++++++++|+++|.+++.+++.|+..||..|..||+++|+.++|||..+.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~H~~~H~~~~~~~~~n~~l~~~~~~~~~~~~~~wr~~H~~HH~~~~~~~~Dpd~~~~ 80 (257)
T PF00487_consen 3 WWWWLLALLLLGLSFARLFGLAHDAGHGAFFRSRWLNDLLGRLLGLPIGGPYSSWRISHNRHHHYTNNPDRDPDSWTR 80 (257)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccChHHHHHHHHHHHHhcCCHhHhheeeeccccccCCccccCccchh
Confidence 455566677788899999999999999999999999999999999999999999999999999999998889987554
No 17
>cd03506 Delta6-FADS-like The Delta6 Fatty Acid Desaturase (Delta6-FADS)-like CD includes the integral-membrane enzymes: delta-4, delta-5, delta-6, delta-8, delta-8-sphingolipid, and delta-11 desaturases found in vertebrates, higher plants, fungi, and bacteria. These desaturases are required for the synthesis of highly unsaturated fatty acids (HUFAs), which are mainly esterified into phospholipids and contribute to maintaining membrane fluidity. While HUFAs may be required for cold tolerance in bacteria, plants and fish, the primary role of HUFAs in mammals is cell signaling. These enzymes are described as front-end desaturases because they introduce a double bond between the pre-exiting double bond and the carboxyl (front) end of the fatty acid. Various substrates are involved, with both acyl-coenzyme A (CoA) and acyl-lipid desaturases present in this CD. Acyl-lipid desaturases are localized in the membranes of cyanobacterial thylakoid, plant endoplasmic reticulum (ER), and plastid; an
Probab=99.71 E-value=3.3e-17 Score=148.85 Aligned_cols=72 Identities=22% Similarity=0.308 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHHHhhhhcccCCCCCCCchHHHHHHHHHHhhccCChhhhhHHHHhhccCCCCCCCCCccccC
Q 019894 160 YWAAQGTMFWALFVLGHDCGHGSFSNDHKLNSVVGHLLHSSILVPYHGWRISHRTHHQNHGHVENDESWHPL 231 (334)
Q Consensus 160 ~~~l~G~~~~~lfvl~HDc~Hgs~fksk~lN~~vG~i~~~~ll~p~~~wr~~H~~HH~~tn~~~~D~~~~p~ 231 (334)
.++++|+....++.++|||+|+++++++++|+++|.+++.+++.|+..||..|+.||++||..++|||+.+.
T Consensus 3 ~ai~~g~~~~~~~~~~Hd~~H~~~~~~~~~n~~~g~~~~~~~g~s~~~w~~~H~~HH~~tn~~~~Dpd~~~~ 74 (204)
T cd03506 3 LAILLGLFWAQGGFLAHDAGHGQVFKNRWLNKLLGLTVGNLLGASAGWWKNKHNVHHAYTNILGHDPDIDTL 74 (204)
T ss_pred HHHHHHHHHHHHHHHHHhccCccccCCchHHHHHHHHHHhccCCCHHHHHHHHhhhcCcCCCCCCCCCCCcC
Confidence 346678888888899999999999999999999999999999999999999999999999999999998654
No 18
>cd01060 Membrane-FADS-like The membrane fatty acid desaturase (Membrane_FADS)-like CD includes membrane FADSs, alkane hydroxylases, beta carotene ketolases (CrtW-like), hydroxylases (CrtR-like), and other related proteins. They are present in all groups of organisms with the exception of archaea. Membrane FADSs are non-heme, iron-containing, oxygen-dependent enzymes involved in regioselective introduction of double bonds in fatty acyl aliphatic chains. They play an important role in the maintenance of the proper structure and functioning of biological membranes. Alkane hydroxylases are bacterial, integral-membrane di-iron enzymes that share a requirement for iron and oxygen for activity similar to that of membrane FADSs, and are involved in the initial oxidation of inactivated alkanes. Beta-carotene ketolase and beta-carotene hydroxylase are carotenoid biosynthetic enzymes for astaxanthin and zeaxanthin, respectively. This superfamily domain has extensive hydrophobic regions that would
Probab=99.35 E-value=1.6e-12 Score=107.08 Aligned_cols=60 Identities=37% Similarity=0.521 Sum_probs=56.5
Q ss_pred HHHhhhhcccCCCCCCCchHHHHHHHHHHhhccCChhhhhHHHHhhccCCCCCCCCCccc
Q 019894 170 ALFVLGHDCGHGSFSNDHKLNSVVGHLLHSSILVPYHGWRISHRTHHQNHGHVENDESWH 229 (334)
Q Consensus 170 ~lfvl~HDc~Hgs~fksk~lN~~vG~i~~~~ll~p~~~wr~~H~~HH~~tn~~~~D~~~~ 229 (334)
++.+++|||+|+++++++++|+++|.+++.+.+.|+..|+..|..||+++++.++||+..
T Consensus 14 ~~~~~~H~~~H~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~H~~HH~~~~~~~~D~~~~ 73 (122)
T cd01060 14 GLTVLAHELGHRSFFRSRWLNRLLGALLGLALGGSYGWWRRSHRRHHRYTNTPGKDPDSA 73 (122)
T ss_pred HHHHHHHHHhhhhhhccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCcCCCCCCCccc
Confidence 677899999999999999999999999999999999999999988999999988998864
No 19
>KOG4232 consensus Delta 6-fatty acid desaturase/delta-8 sphingolipid desaturase [Lipid transport and metabolism]
Probab=99.26 E-value=4.6e-11 Score=118.43 Aligned_cols=114 Identities=13% Similarity=0.116 Sum_probs=89.8
Q ss_pred CHHHHHHhccc-cccccCchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCch
Q 019894 110 KLADIRAAIPK-HCWVKDPWKSMSYVVRDVVVVFGLAAAAAYLNNWVVWPLYWAAQGTMFWALFVLGHDCGHGSFSNDHK 188 (334)
Q Consensus 110 tl~dIr~aiPk-~~f~~~~~rsl~~l~~d~~ii~~l~~la~~~~~w~lw~l~~~l~G~~~~~lfvl~HDc~Hgs~fksk~ 188 (334)
+.+++|+++++ .++..++...+...+.+++..+.++.+. |.+.++..+++|..+.....++||.||.+.+|+++
T Consensus 100 ~f~klr~~~~~~gl~~~~~~ffl~~~l~~i~~~~~a~~~i-----~~~~l~~a~Ll~~a~~Qs~~l~Hd~gH~~i~~~~~ 174 (430)
T KOG4232|consen 100 SFRKLREKLEDMGLMDLNKTFFLHLLLLIILYLVLAWLLI-----YLLSLISAVLLGLAWAQSGWLQHDYGHLSIFKNSK 174 (430)
T ss_pred HHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHhccccccccccccc
Confidence 46788888885 6677766666555544444332222221 22246667888999999999999999999999999
Q ss_pred HHHHHHHHHH-hhccCChhhhhHHHHhhccCCCCCCCCCcc
Q 019894 189 LNSVVGHLLH-SSILVPYHGWRISHRTHHQNHGHVENDESW 228 (334)
Q Consensus 189 lN~~vG~i~~-~~ll~p~~~wr~~H~~HH~~tn~~~~D~~~ 228 (334)
+|+++..+.+ ...+.+-.+|+..|++||.++|..++|||.
T Consensus 175 wN~~~~~fv~n~L~G~sa~WW~~~H~~HHa~pN~~~~DpDi 215 (430)
T KOG4232|consen 175 WNHLAQKFVGNHLKGFSAAWWKSHHNQHHAAPNSLDKDPDI 215 (430)
T ss_pred HHHHHHHHHhhhcccccHHHHHHHHhhhhccCccCCCCccc
Confidence 9999999988 788999999999999999999999999985
No 20
>cd03512 Alkane-hydroxylase Alkane hydroxylase is a bacterial, integral-membrane di-iron enzyme that shares a requirement for iron and oxygen for activity similar to that of the non-heme integral-membrane acyl coenzyme A (CoA) desaturases and acyl lipid desaturases. The alk genes in Pseudomonas oleovorans encode conversion of alkanes to acyl CoA. The alkane omega-hydroxylase (AlkB) system is responsible for the initial oxidation of inactivated alkanes. It is a three-component system comprising a soluble NADH-rubredoxin reductase (AlkT), a soluble rubredoxin (AlkG), and the integral membrane oxygenase (AlkB). AlkB utilizes the oxygen rebound mechanism to hydroxylate alkanes. This mechanism involves homolytic cleavage of the C-H bond by an electrophilic metal-oxo intermediate to generate a substrate-based radical. As with other members of this superfamily, this domain family has extensive hydrophobic regions that would be capable of spanning the membrane bilayer at least twice. The active
Probab=99.09 E-value=1.4e-10 Score=112.61 Aligned_cols=153 Identities=20% Similarity=0.229 Sum_probs=89.7
Q ss_pred HHHHHHHHHHHHHHHHHHH-HhhhhcccCCCCCCCchHHHHHHHHHHhhccCChhhhhHHHH-hhccCCCCCCCCCcccc
Q 019894 153 NWVVWPLYWAAQGTMFWAL-FVLGHDCGHGSFSNDHKLNSVVGHLLHSSILVPYHGWRISHR-THHQNHGHVENDESWHP 230 (334)
Q Consensus 153 ~w~lw~l~~~l~G~~~~~l-fvl~HDc~Hgs~fksk~lN~~vG~i~~~~ll~p~~~wr~~H~-~HH~~tn~~~~D~~~~p 230 (334)
+|+..+..++..|++..++ ...+|||+| |++++|+++|.++..+. .+..|+..|. .||+++++ ++||+-..
T Consensus 68 ~~~~~~~~~~~~G~~~g~i~~~~aHel~H----r~~~lnr~lg~~~~~~~--~~~~~~~~H~~~HH~~v~t-p~DP~tar 140 (314)
T cd03512 68 SALEKVGLILSLGLLSGVIGINTAHELIH----RRSRLERWLGKLLLASL--LYGHFAIEHVRGHHRYVAT-PEDPATAR 140 (314)
T ss_pred cHHHHHHHHHHHHHHHHHhhHHHHHhccC----CCChHHHHHHHHHHHHh--cccceeeeecccCCCCCCC-CCCccccc
Confidence 4555555556777777644 478888888 67999999999986554 5666999995 89999998 78998665
Q ss_pred CcHHHHHhhhh-hhhhhHhhcccchhhhHHHHH-hcCCCCCccCcCCCCCCCCcccchHHHHHHHHHHHHHHHHHHHHHH
Q 019894 231 LSEKIYRTLDS-ATRFLRFKIPFPLLAYPFYLW-SRSPGKTGSHFDPNSDLFVPSERKDVITSTVCWTAMAALLVGLSFV 308 (334)
Q Consensus 231 ~t~~~y~~l~~-~~~~l~~~lp~~l~g~p~Yl~-~r~~g~~~shF~p~s~lF~p~er~~Vi~S~~~~~a~~all~~ls~~ 308 (334)
..+..|+.+.. ..+.++ -+|-..-- .+..++ +. + +-+++++...++. ++++++++.
T Consensus 141 ~ge~~y~f~~r~~~g~~~-------~aw~~e~~rl~~~g~--~~-------~--~~~n~~l~~~~~~----~a~~~~~~~ 198 (314)
T cd03512 141 RGESFYRFLPRALVGSFR-------SAWKLEKKRLRRKGR--SP-------W--SPRNEVLRYLALA----VALLALAAA 198 (314)
T ss_pred cCccHHHHHHHHHHHHHH-------HHHHHHHHHHHhcCC--CC-------C--ccchHHHHHHHHH----HHHHHHHHH
Confidence 55566654311 111000 01110000 011111 00 1 1233444444443 333444455
Q ss_pred hchHHHHHHHHhhHHHhhheeEEEEC
Q 019894 309 MGPMQLLKLYGLPYWVNFFHLSFICF 334 (334)
Q Consensus 309 ~G~~~~L~~yliP~lv~~~WL~~vTy 334 (334)
.|.+..+.++++|.++....+.++.|
T Consensus 199 ~~g~~~l~~~l~~~~~g~~~l~~~nY 224 (314)
T cd03512 199 LGGLAGLLFLLIQAFYAKSLLELVNY 224 (314)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566677899999888766655544
No 21
>KOG2987 consensus Fatty acid desaturase [Lipid transport and metabolism]
Probab=99.05 E-value=4.5e-10 Score=105.12 Aligned_cols=120 Identities=18% Similarity=0.159 Sum_probs=89.0
Q ss_pred CCHHHHHHhcc--ccccccCchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHHHhhhhcccCCCCCC
Q 019894 109 FKLADIRAAIP--KHCWVKDPWKSMSYVVRDVVVVFGLAAAAAYLNNWVVWPL-YWAAQGTMFWALFVLGHDCGHGSFSN 185 (334)
Q Consensus 109 ~tl~dIr~aiP--k~~f~~~~~rsl~~l~~d~~ii~~l~~la~~~~~w~lw~l-~~~l~G~~~~~lfvl~HDc~Hgs~fk 185 (334)
=+.+||.++.| |.+|.+|++.-+..+..-++.+.++ ++. .-..|...+. +.++-|++...++...||-+|+..|+
T Consensus 21 sRR~eIL~kyPeIk~Lfg~dp~~kwvv~~~Vi~Q~~~~-~ll-~dl~W~~il~~AYf~gg~iNhsl~LAIHeiSHN~aFg 98 (324)
T KOG2987|consen 21 SRRKEILAKYPEIKSLFGPDPNLKWVVLGMVILQILAA-YLL-RDLDWKWILFIAYFFGGFINHSLTLAIHEISHNLAFG 98 (324)
T ss_pred hHHHHHHHhChHHHHHhCCCcchHHHHHHHHHHHHHHH-HHH-hcccHHHHHHHHHHhhhhhchhHHHHHHHhhhhhhcc
Confidence 46789999999 6999999887654333222222111 111 0123432222 23567788889998999999999998
Q ss_pred C--chHHHHHHHHHHhhccCChh-hhhHHHHhhccCCCCCCCCCcccc
Q 019894 186 D--HKLNSVVGHLLHSSILVPYH-GWRISHRTHHQNHGHVENDESWHP 230 (334)
Q Consensus 186 s--k~lN~~vG~i~~~~ll~p~~-~wr~~H~~HH~~tn~~~~D~~~~p 230 (334)
+ +..|+++|.++.+|+++|+. ++|+.|.+||++.+.++-|.|...
T Consensus 99 ~~rpl~NR~~g~fANLPigvP~siSFkkYHleHHry~G~DgiDtDvPT 146 (324)
T KOG2987|consen 99 TNRPLYNRIFGFFANLPIGVPMSISFKKYHLEHHRYLGVDGIDTDVPT 146 (324)
T ss_pred cCchHHHHHHHHhhcCcccCceeeeehhhhhHHhHhcCCccccCCCCc
Confidence 8 67899999999999999998 899999999999999888988743
No 22
>COG1398 OLE1 Fatty-acid desaturase [Lipid metabolism]
Probab=96.29 E-value=0.097 Score=50.26 Aligned_cols=51 Identities=24% Similarity=0.313 Sum_probs=42.5
Q ss_pred hhcc-cCCCCCCCchHHHHHHHHHHhhccCChhhhhHHHHhhccCCCCCCCCC
Q 019894 175 GHDC-GHGSFSNDHKLNSVVGHLLHSSILVPYHGWRISHRTHHQNHGHVENDE 226 (334)
Q Consensus 175 ~HDc-~Hgs~fksk~lN~~vG~i~~~~ll~p~~~wr~~H~~HH~~tn~~~~D~ 226 (334)
.|-| +|.++.-.+++.-++-....+....|...|-..|+.||+++.+ +.||
T Consensus 66 ~HRl~sHRa~~~~k~Le~~la~~g~l~~~G~~~~W~~~HR~HHr~tDT-d~DP 117 (289)
T COG1398 66 LHRLWSHRAFKAHKWLEYVLAFWGALTTQGPAIEWVGIHRKHHRKTDT-DQDP 117 (289)
T ss_pred hhhhhhhhhcccchHHHHHHHHHHHhhcCCCceeHHHHHHHhhcccCC-CCCC
Confidence 4666 7888888888888887777788899999999999999999944 6666
No 23
>PLN02220 delta-9 acyl-lipid desaturase
Probab=96.08 E-value=0.042 Score=53.51 Aligned_cols=47 Identities=23% Similarity=0.227 Sum_probs=37.3
Q ss_pred cCCCCCCCchHHHHHHHHHHhhccCChhhhhHHHHhhccCCCCCCCCC
Q 019894 179 GHGSFSNDHKLNSVVGHLLHSSILVPYHGWRISHRTHHQNHGHVENDE 226 (334)
Q Consensus 179 ~Hgs~fksk~lN~~vG~i~~~~ll~p~~~wr~~H~~HH~~tn~~~~D~ 226 (334)
+|.++--++++.-++..+..+..-.+...|-..|+.||+++.+ ++||
T Consensus 81 sHrsfka~~~l~~~la~~g~~a~Qgs~~~Wv~~HR~HH~~sDt-~~DP 127 (299)
T PLN02220 81 AHRSFKLPKWLEYPFAYSALFALQGDPIDWVSTHRFHHQFTDS-DRDP 127 (299)
T ss_pred HhhcCcCcHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCC-CCCc
Confidence 7888877777776666666666777888999999999999976 5565
No 24
>cd03505 Delta9-FADS-like The Delta9 Fatty Acid Desaturase (Delta9-FADS)-like CD includes the delta-9 and delta-11 acyl CoA desaturases found in various eukaryotes including vertebrates, insects, higher plants, and fungi. The delta-9 acyl-lipid desaturases are found in a wide range of bacteria. These enzymes play essential roles in fatty acid metabolism and the regulation of cell membrane fluidity. Acyl-CoA desaturases are the enzymes involved in the CoA-bound desaturation of fatty acids. Mammalian stearoyl-CoA delta-9 desaturase is a key enzyme in the biosynthesis of monounsaturated fatty acids, and in yeast, the delta-9 acyl-CoA desaturase (OLE1) reaction accounts for all de nova unsaturated fatty acid production in Saccharomyces cerevisiae. These non-heme, iron-containing, ER membrane-bound enzymes are part of a three-component enzyme system involving cytochrome b5, cytochrome b5 reductase, and the delta-9 fatty acid desaturase. This complex catalyzes the NADH- and oxygen-dependent i
Probab=94.13 E-value=0.21 Score=45.16 Aligned_cols=47 Identities=23% Similarity=0.266 Sum_probs=40.4
Q ss_pred cCCCCCCCchHHHHHHHHHHhhccCChhhhhHHHHhhccCCCCCCCCC
Q 019894 179 GHGSFSNDHKLNSVVGHLLHSSILVPYHGWRISHRTHHQNHGHVENDE 226 (334)
Q Consensus 179 ~Hgs~fksk~lN~~vG~i~~~~ll~p~~~wr~~H~~HH~~tn~~~~D~ 226 (334)
.|+++--++.+..++..+..+....+...|...|+.||+++.+ ++||
T Consensus 28 aHrsfk~~~~l~~~l~~~g~~a~qgs~~~W~~~HR~HH~~sDt-~~DP 74 (178)
T cd03505 28 AHRSFKAPKPLRIFLAILGSLAGQGSPLWWVADHRLHHRYSDT-DGDP 74 (178)
T ss_pred hhccCcCcHHHHHHHHHHHHHHcCcCHHHHHHHHHHhhcccCC-CCCC
Confidence 7999988888888887777777888999999999999999987 4565
No 25
>KOG1600 consensus Fatty acid desaturase [Lipid transport and metabolism]
Probab=90.09 E-value=1.4 Score=43.20 Aligned_cols=48 Identities=19% Similarity=0.263 Sum_probs=37.1
Q ss_pred ccCCCCCCCchHHHHHHHHHHhhccCChhhhhHHHHhhccCCCCCCCCC
Q 019894 178 CGHGSFSNDHKLNSVVGHLLHSSILVPYHGWRISHRTHHQNHGHVENDE 226 (334)
Q Consensus 178 c~Hgs~fksk~lN~~vG~i~~~~ll~p~~~wr~~H~~HH~~tn~~~~D~ 226 (334)
=+|.|+--++++--++-..-.+.+=.....|-..|+.||++|.+ ++||
T Consensus 91 wsHRSyKa~kpLr~fla~~~~~A~Qg~~~~WvrdHR~HHk~tdT-D~DP 138 (321)
T KOG1600|consen 91 WSHRSYKAPKPLRYFLAYCNTLAFQGDIIDWVRDHRVHHKFTDT-DADP 138 (321)
T ss_pred cccccccCCccHHHHHHHHHHHhccCChhHHHhhhhhhcccccc-CCCC
Confidence 37899888888877776666555555555899999999999988 6676
No 26
>PLN02601 beta-carotene hydroxylase
Probab=49.27 E-value=49 Score=32.14 Aligned_cols=82 Identities=15% Similarity=0.146 Sum_probs=41.8
Q ss_pred cccccCchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH-Hhhhhcc-cCCCCCCCchHHHHHHHHHH
Q 019894 121 HCWVKDPWKSMSYVVRDVVVVFGLAAAAAYLNNWVVWPLYWAAQGTMFWAL-FVLGHDC-GHGSFSNDHKLNSVVGHLLH 198 (334)
Q Consensus 121 ~~f~~~~~rsl~~l~~d~~ii~~l~~la~~~~~w~lw~l~~~l~G~~~~~l-fvl~HDc-~Hgs~fksk~lN~~vG~i~~ 198 (334)
.-|++|+...+.+-+-.++++ +.......++.+.++++-.|+...|+ +.+.||. .|+.+--.+..|.-
T Consensus 176 g~FE~NDlFaVifAvpAIaL~----~~G~~~~g~~p~~~fgiGlGITlYGiaYffVHDgLVHqRfp~~~~a~~~------ 245 (303)
T PLN02601 176 GAFELNDVFAIVNAVPAIGLL----YYGFFNKGLVPGLCFGAGLGITVFGMAYMFVHDGLVHKRFPVGPIANVP------ 245 (303)
T ss_pred CCcccccchhhhhHHHHHHHH----HHhhccccccHHHHHHHHHhHHHHHHHHHHHhhhhhccccccCCCCCCH------
Confidence 558888877655433222211 11111112222233455567766666 4889995 57765322221111
Q ss_pred hhccCChhhhhHHHHhhcc
Q 019894 199 SSILVPYHGWRISHRTHHQ 217 (334)
Q Consensus 199 ~~ll~p~~~wr~~H~~HH~ 217 (334)
-...-+.-|..||+
T Consensus 246 -----Y~rrl~~AHklHHa 259 (303)
T PLN02601 246 -----YLRKVAAAHQLHHT 259 (303)
T ss_pred -----HHHHHHHHHHhhcc
Confidence 11244678999999
No 27
>PF13829 DUF4191: Domain of unknown function (DUF4191)
Probab=49.24 E-value=47 Score=31.30 Aligned_cols=63 Identities=16% Similarity=0.165 Sum_probs=30.9
Q ss_pred CHHHHHHhccccccccCchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhh
Q 019894 110 KLADIRAAIPKHCWVKDPWKSMSYVVRDVVVVFGLAAAAAYLNNWVVWPLYWAAQGTMFWALFVL 174 (334)
Q Consensus 110 tl~dIr~aiPk~~f~~~~~rsl~~l~~d~~ii~~l~~la~~~~~w~lw~l~~~l~G~~~~~lfvl 174 (334)
++++|+++.- ---+.|++-.++-++.-++.++....+.+.+++|+.|.+..++.|... +++++
T Consensus 9 ~~~Qi~q~y~-~trk~dp~l~~~ml~a~l~~~~v~v~ig~l~~~~~~~~i~gi~~g~l~-am~vl 71 (224)
T PF13829_consen 9 RRKQIWQAYK-MTRKEDPKLPWLMLGAFLGPIAVFVLIGLLFGSWWYWLIIGILLGLLA-AMIVL 71 (224)
T ss_pred HHHHHHHHHH-HHHHHCcchHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHH-HHHHH
Confidence 5677777663 112234444433333333333333334444567777776666655543 33344
No 28
>PF09396 Thrombin_light: Thrombin light chain; InterPro: IPR018992 Thrombin is a Na+-activated, allosteric serine protease that functions in blood homeostasis, inflammation and wound healing []. Thrombin (or coagulation factor II) is an enzyme that cleaves bonds after Arg and Lys, converts fibrinogen to fibrin and activates factors V, VII, VIII, and (in complex with thrombomodulin) protein C []. Sodium binding is the major driving force behind the procoagulant, prothrombotic and signaling functions of the enzyme, but is dispensable for cleavage of the anticoagulant protein C []. Prothrombin is activated on the surface of a phospholipid membrane where factor Xa removes the activation peptide and cleaves the remaining part into light and heavy chains. This domain corresponds to the light chain of thrombin. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis, 0007596 blood coagulation, 0005576 extracellular region; PDB: 3HKI_D 2OCV_A 3EDX_A 3HK6_C 2PV9_A 2PUX_A 3HK3_A 1HRT_L 1TOC_G 1ETT_L ....
Probab=47.43 E-value=8.1 Score=27.72 Aligned_cols=9 Identities=56% Similarity=1.346 Sum_probs=5.2
Q ss_pred cccCCCCCC
Q 019894 7 SECGLKPLP 15 (334)
Q Consensus 7 ~~~~~~~~~ 15 (334)
.+||+|||=
T Consensus 20 adCG~RPlF 28 (49)
T PF09396_consen 20 ADCGLRPLF 28 (49)
T ss_dssp TTTT--TTT
T ss_pred cccCcchhh
Confidence 369999984
No 29
>PF05313 Pox_P21: Poxvirus P21 membrane protein; InterPro: IPR007977 The p21 membrane protein of vaccinia virus, encoded by the A17L (or A18L) gene, has been reported to localise on the inner of the two membranes of the intracellular mature virus (IMV). It has also been shown that p21 acts as a membrane anchor for the externally located fusion protein P14 (A27L gene) [].; GO: 0016021 integral to membrane
Probab=35.47 E-value=39 Score=30.86 Aligned_cols=50 Identities=18% Similarity=0.282 Sum_probs=29.2
Q ss_pred CCCCCCCcccccCCCCCCCCCCCCC---HHHHHHhccccccccCchhHHHHHHH
Q 019894 86 GIGNNKGVEEEEGSEFDPGAPPPFK---LADIRAAIPKHCWVKDPWKSMSYVVR 136 (334)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~p~p~t---l~dIr~aiPk~~f~~~~~rsl~~l~~ 136 (334)
|+..++-|++||++.|-|-++-..+ .-.++...| ..+++++.|++..++.
T Consensus 18 GV~D~ELFT~EEq~sFlPk~~~~~~~~~~~~~~~~~~-~Il~~nDir~LiglIl 70 (189)
T PF05313_consen 18 GVSDEELFTEEEQESFLPKDGGGPGGPDFPGIKNLFP-NILMNNDIRSLIGLIL 70 (189)
T ss_pred CCChhhhcCHHHHHccCCCCCCCCCCCCCccccccch-HHHhcccHHHHHHHHH
Confidence 3333444555555555544333211 236777777 7789999999876653
No 30
>PF04298 Zn_peptidase_2: Putative neutral zinc metallopeptidase; InterPro: IPR007395 Members of this family of bacterial proteins are described as hypothetical proteins or zinc-dependent proteases. The majority have a HExxH zinc-binding motif characteristic of neutral zinc metallopeptidases, however there is no evidence to support their function as metallopeptidases.
Probab=34.40 E-value=13 Score=34.93 Aligned_cols=11 Identities=36% Similarity=0.727 Sum_probs=8.2
Q ss_pred HHhhhhcccCC
Q 019894 171 LFVLGHDCGHG 181 (334)
Q Consensus 171 lfvl~HDc~Hg 181 (334)
..+-+|||||-
T Consensus 90 vaVAAHEvGHA 100 (222)
T PF04298_consen 90 VAVAAHEVGHA 100 (222)
T ss_pred HHHHHHHHhHH
Confidence 33568999996
No 31
>PLN02434 fatty acid hydroxylase
Probab=31.72 E-value=2.8e+02 Score=26.33 Aligned_cols=12 Identities=25% Similarity=0.437 Sum_probs=9.4
Q ss_pred HHHHhhccCCCC
Q 019894 210 ISHRTHHQNHGH 221 (334)
Q Consensus 210 ~~H~~HH~~tn~ 221 (334)
..|..||.++.+
T Consensus 121 llHg~HH~~P~D 132 (237)
T PLN02434 121 LLHGCHHKHPMD 132 (237)
T ss_pred HHHHHhhcCCCC
Confidence 358999998865
No 32
>PLN02505 omega-6 fatty acid desaturase
Probab=24.81 E-value=1.7e+02 Score=29.65 Aligned_cols=37 Identities=11% Similarity=0.057 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHhhhhcccCCCCCCCchHHHHHHHHHH
Q 019894 162 AAQGTMFWALFVLGHDCGHGSFSNDHKLNSVVGHLLH 198 (334)
Q Consensus 162 ~l~G~~~~~lfvl~HDc~Hgs~fksk~lN~~vG~i~~ 198 (334)
++.+.....++.++|---.--..+.+.+|-.-|.+.+
T Consensus 260 lv~~~wlv~itylqHt~~~ip~~~~~~W~~~rgAl~t 296 (381)
T PLN02505 260 LIVNAFLVLITYLQHTHPALPHYDSSEWDWLRGALAT 296 (381)
T ss_pred HHHHHHHHHHHHHhccCCCCCccCCCCcChhhcccee
Confidence 3444455556678997766677788889988887754
No 33
>cd03509 DesA_FADS-like Fatty acid desaturase protein family subgroup, a delta-12 acyl-lipid desaturase-like, DesA-like, yet uncharacterized subgroup of membrane fatty acid desaturase proteins found in alpha-, beta-, and gamma-proteobacteria. Sequences of this domain family appear to be structurally related to membrane fatty acid desaturases and alkane hydroxylases. They all share in common extensive hydrophobic regions that would be capable of spanning the membrane bilayer at least twice. Comparison of these sequences also reveals three regions of conserved histidine cluster motifs that contain eight histidine residues: HXXXH, HXXHH, and HXXHH. These histidine residues are reported to be catalytically essential and proposed to be the ligands for the iron atoms contained within homologs, stearoyl CoA desaturase and alkane hydroxylase.
Probab=21.62 E-value=6.7e+02 Score=24.11 Aligned_cols=12 Identities=25% Similarity=0.138 Sum_probs=9.8
Q ss_pred HHHHhhccCCCC
Q 019894 210 ISHRTHHQNHGH 221 (334)
Q Consensus 210 ~~H~~HH~~tn~ 221 (334)
-.|..||.++..
T Consensus 230 nyH~~HH~~P~v 241 (288)
T cd03509 230 NLHVVHHDLPTL 241 (288)
T ss_pred CchHhhcCCCCC
Confidence 458999998876
No 34
>cd03512 Alkane-hydroxylase Alkane hydroxylase is a bacterial, integral-membrane di-iron enzyme that shares a requirement for iron and oxygen for activity similar to that of the non-heme integral-membrane acyl coenzyme A (CoA) desaturases and acyl lipid desaturases. The alk genes in Pseudomonas oleovorans encode conversion of alkanes to acyl CoA. The alkane omega-hydroxylase (AlkB) system is responsible for the initial oxidation of inactivated alkanes. It is a three-component system comprising a soluble NADH-rubredoxin reductase (AlkT), a soluble rubredoxin (AlkG), and the integral membrane oxygenase (AlkB). AlkB utilizes the oxygen rebound mechanism to hydroxylate alkanes. This mechanism involves homolytic cleavage of the C-H bond by an electrophilic metal-oxo intermediate to generate a substrate-based radical. As with other members of this superfamily, this domain family has extensive hydrophobic regions that would be capable of spanning the membrane bilayer at least twice. The active
Probab=20.51 E-value=3.8e+02 Score=26.16 Aligned_cols=11 Identities=27% Similarity=0.516 Sum_probs=8.8
Q ss_pred HHHhhccCCCC
Q 019894 211 SHRTHHQNHGH 221 (334)
Q Consensus 211 ~H~~HH~~tn~ 221 (334)
.|..||.++..
T Consensus 265 rHsdHH~~p~~ 275 (314)
T cd03512 265 RHSDHHAHPTR 275 (314)
T ss_pred hhhhhccCCCC
Confidence 57899998764
Done!