Query 019900
Match_columns 334
No_of_seqs 143 out of 1026
Neff 7.6
Searched_HMMs 46136
Date Fri Mar 29 05:25:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019900.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019900hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02491 carotenoid 9,10(9',10 100.0 1.3E-88 2.9E-93 682.2 36.8 334 1-334 212-545 (545)
2 PLN02258 9-cis-epoxycarotenoid 100.0 3.1E-83 6.8E-88 645.2 35.5 309 1-331 275-589 (590)
3 COG3670 Lignostilbene-alpha,be 100.0 1.3E-81 2.7E-86 598.4 28.7 308 2-326 170-489 (490)
4 PF03055 RPE65: Retinal pigmen 100.0 1.1E-78 2.4E-83 608.1 29.3 308 2-325 156-486 (486)
5 PLN02969 9-cis-epoxycarotenoid 100.0 2.3E-73 5E-78 579.1 34.0 302 10-325 254-610 (610)
6 KOG1285 Beta, beta-carotene 15 100.0 1.7E-47 3.7E-52 381.1 19.6 308 1-331 269-581 (582)
7 KOG1285 Beta, beta-carotene 15 99.6 2E-14 4.4E-19 144.4 18.2 204 3-213 179-414 (582)
8 PF02239 Cytochrom_D1: Cytochr 49.3 1.2E+02 0.0027 29.4 9.4 74 204-311 46-119 (369)
9 PF06433 Me-amine-dh_H: Methyl 39.9 3.6E+02 0.0078 26.1 16.9 38 275-314 249-291 (342)
10 PF09843 DUF2070: Predicted me 32.9 45 0.00097 29.0 3.1 50 249-303 39-88 (179)
11 PF02239 Cytochrom_D1: Cytochr 29.6 81 0.0018 30.7 4.6 80 206-312 280-359 (369)
12 PF08262 Lem_TRP: Leucophaea m 27.7 26 0.00056 15.7 0.3 7 315-321 3-9 (10)
13 PF14839 DOR: DOR family 24.3 72 0.0016 28.8 2.9 14 271-284 3-16 (216)
14 KOG0303 Actin-binding protein 24.2 7.1E+02 0.015 24.8 9.6 37 96-136 271-308 (472)
15 COG4393 Predicted membrane pro 23.5 1.8E+02 0.0039 28.1 5.4 53 92-146 304-358 (405)
16 TIGR02276 beta_rpt_yvtn 40-res 21.3 2E+02 0.0042 17.5 3.9 27 288-317 12-38 (42)
17 PF02736 Myosin_N: Myosin N-te 20.8 44 0.00095 21.7 0.6 26 260-292 3-28 (42)
No 1
>PLN02491 carotenoid 9,10(9',10')-cleavage dioxygenase
Probab=100.00 E-value=1.3e-88 Score=682.21 Aligned_cols=334 Identities=89% Similarity=1.424 Sum_probs=293.9
Q ss_pred CCCCCCCCCCCCCCCCeecCCCCcEEEEEeecCCCcEEEEEEcCCCCeEeeEEEEcCCCccccccccCCCEEEEEeCCee
Q 019900 1 MLDYDKRLQHSFTAHPKVDPYTGEMFTFGYAHTPPYITYRVISKDGFMHDPVPITVSDPIMMHDFAITENYAIFMDLPLY 80 (334)
Q Consensus 1 ~~d~~g~l~~~~tAHPk~Dp~tG~l~~fg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~iHdfa~Teny~V~~~~P~~ 80 (334)
++||+|+|..+||||||+||.||||+||||+..+++++|++++++|++.+.+++++|.++|||||||||||+||+++|++
T Consensus 212 ~~df~g~l~~~~TAHPk~DP~TGel~~fgy~~~~p~~~y~~~~~~G~~~~~v~i~l~~~~~~HDFaiTeny~Vf~~~Pl~ 291 (545)
T PLN02491 212 LLDYDKRLKHSFTAHPKVDPFTGEMFTFGYSHEPPYITYRVISKDGAMHDPVPITISEPIMMHDFAITENYAIFMDLPLY 291 (545)
T ss_pred ecccCCccCcccccCccCcCCCCCEEEEEecCCCCcEEEEEECCCCcCcceeEeecCCCceeeeeEecCCEEEEEECCcc
Confidence 47899999989999999999999999999998778999999999999999899999999999999999999999999999
Q ss_pred cCHHHHhhcCceeeEEcCCCCcEEEEEeCCCCCCCceEEEEcCCeeEEcccceeecCCeEEEEEEecCCCCcccccchhh
Q 019900 81 FRPKEMVKENKLIFTFDDTKKARFGILPRYAKNEAQMKWFELPNCFIFHNANAWEEEDEVVLITCRLDKPDLDMVNGAVK 160 (334)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~tr~~vipR~~~~~~~v~~~~~~~~f~fH~~NAyE~~~~ivvd~~~~~~~~~~~~~~~~~ 160 (334)
+|+.+|+++++.++.|+|++++||+||||++++.+.++||++|+||+||++|||||+|+||+|.|+++++.+....+...
T Consensus 292 ~~~~~~~~~~~~~~~~d~~~~~r~gVipR~~~~~~~irw~e~~~~f~fH~~NA~Ee~~~Ivvd~~~~~~~~~~~~~~~~~ 371 (545)
T PLN02491 292 FRPKEMVKEKKFIYTFDATKKARFGVLPRYAKDELMIRWFELPNCFIFHNANAWEEEDEVVLITCRLENPDLDMVNGKVK 371 (545)
T ss_pred cCHHHHhhCCCceeEECCCCCcEEEEEECCCCCCCceEEEEcCCceEeecCCccccCCeEEEEEeccCCCcccccccccc
Confidence 99999988777889999999999999999875556899999999999999999999999999999998765432222222
Q ss_pred hccccCcceEEEEEEeCCCCceeEEeccCCCccCcccCCCCCCCCcceEEEeccCCCCCcCeEEEEEcCCCCccccceec
Q 019900 161 EKLENFSNELYEMRFNLKTGLASQKRLSASAVDFPRVNECYTGRKQRYVYGTILDSIAKVTGIIKFDLHAEPDEEKTKLE 240 (334)
Q Consensus 161 ~~~~~~~~~l~R~~idl~~g~~~~~~l~~~~~EfP~in~~~~G~~yry~y~~~~~~~~~~~~l~k~D~~t~~~~~~~~~~ 240 (334)
+......++|+|||||+++|+++++.|++.++|||+||+++.||+|||+|++..++.+.+++|+|+|++++..+++.+.+
T Consensus 372 ~~~~~~~~~l~r~ridl~tg~~~~~~l~~~~~EfP~In~~~~Grk~ry~Y~~~~~~~~~~~gl~K~D~~t~~~~g~~~~~ 451 (545)
T PLN02491 372 EKLENFGNELYEMRFNMKTGAASQKKLSASAVDFPRVNESYTGRKQRYVYGTILDSIAKVTGIIKFDLHAEPETGKKKLE 451 (545)
T ss_pred ccccccCceEEEEEEECCCCceeeeccCCcccccCccCHHHCCCcccEEEEeccCCccCcCeEEEEEecccccCCccccc
Confidence 22223468999999999999999999999999999999999999999999998876667899999999975322322222
Q ss_pred cCCceeeEEEcCCCCcccceEEeeCCCCCCCCCCCeEEEEEEEeCCCCCcEEEEEeCCCCCCCceEEEEcCCcCCCCcCc
Q 019900 241 VGGNVRGIFDLGPGRFGSEAVFVPREPGTSSEEDVGYLIFFSHDEKTGKSSVNVIDAKTMSADPVAVVELPHRVPYGFHA 320 (334)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~EPvFVPr~~~~~~~EDDG~lL~~v~d~~~~~s~L~VlDA~~l~~gpvAr~~Lp~~iP~gfHG 320 (334)
.|++..+.|++++++|+|||+||||+++.+++|||||||++|+|..+++|+|+||||++|++|||||++||++||+||||
T Consensus 452 ~~~~~~~~~~~g~~~~~~EPvFVPr~~~~~~~EDDG~ll~~V~d~~~~~S~l~VlDAk~~~~~pVA~v~LP~rVP~GfHG 531 (545)
T PLN02491 452 VGGNVKGIFDLGPGRFGSEAIFVPREPGTTSEEDDGYLIFFVHDENTGKSSVNVIDAKTMSADPVAVVELPHRVPYGFHA 531 (545)
T ss_pred cccceeEEEEcCCCccccCCEEecCCCCCCcccCCcEEEEEEEcCCCCcceEEEEeCCCCCCCeeEEEECCCCCCCCccc
Confidence 34444467999999999999999996542258999999999999999999999999999999999999999999999999
Q ss_pred cCcChhhHHHhhcC
Q 019900 321 FFVSEEQLEEQAKL 334 (334)
Q Consensus 321 ~w~~~~~~~~~~~~ 334 (334)
+|+++++|.+|+.+
T Consensus 532 ~fv~~~~l~~~~~~ 545 (545)
T PLN02491 532 FFVTEEQLQEQAKL 545 (545)
T ss_pred cCcCHHHHHHhhcC
Confidence 99999999998754
No 2
>PLN02258 9-cis-epoxycarotenoid dioxygenase NCED
Probab=100.00 E-value=3.1e-83 Score=645.24 Aligned_cols=309 Identities=42% Similarity=0.744 Sum_probs=276.9
Q ss_pred CCCCCCCCCCCCCCCCeecCCCCcEEEEEeec-CCCcEEEEEEcCCCCeEeeEEEEcCCCccccccccCCCEEEEEeCCe
Q 019900 1 MLDYDKRLQHSFTAHPKVDPYTGEMFTFGYAH-TPPYITYRVISKDGFMHDPVPITVSDPIMMHDFAITENYAIFMDLPL 79 (334)
Q Consensus 1 ~~d~~g~l~~~~tAHPk~Dp~tG~l~~fg~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~iHdfa~Teny~V~~~~P~ 79 (334)
++||+|.|..+||||||+||.||||+||+|+. ..++++|+++|++|++.+.+++++|.++|||||||||||+||+++|+
T Consensus 275 ~~df~g~l~~~ftAHPKvDP~TGel~~f~y~~~~~p~l~~~~~d~~G~~~~~~~i~lp~p~~~HDFaiTenY~Vf~d~Pl 354 (590)
T PLN02258 275 RYDFDGQLDSSMIAHPKVDPVTGELFALSYDVVKKPYLKYFRFSPDGEKSPDVEIPLDQPTMMHDFAITENFVVIPDQQV 354 (590)
T ss_pred ccccCCccCcccccCceEcCCCCeEEEEEEeccCCCcEEEEEECCCCCEEeeEEeeCCCCccccceeccCceEEEEccCc
Confidence 47899999889999999999999999999985 45889999999999999999999999999999999999999999999
Q ss_pred ecCHHHHhhcCceeeEEcCCCCcEEEEEeCCCCCCCceEEEEcCCeeEEcccceeec--CCeEEEEEEecCCCCcccccc
Q 019900 80 YFRPKEMVKENKLIFTFDDTKKARFGILPRYAKNEAQMKWFELPNCFIFHNANAWEE--EDEVVLITCRLDKPDLDMVNG 157 (334)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~tr~~vipR~~~~~~~v~~~~~~~~f~fH~~NAyE~--~~~ivvd~~~~~~~~~~~~~~ 157 (334)
.+|+.+|+.|+ .++.|+|++++||+||||++++...++||++|+||+||++||||+ +|+||+|.|++.+....+
T Consensus 355 ~~~~~~~~~g~-~~~~~d~~~~srfgVipR~~~~~~~irwfe~p~~f~fH~~NA~Ee~~~~~VVvd~~~~~~~~~~~--- 430 (590)
T PLN02258 355 VFKLSEMIRGG-SPVVYDKNKTSRFGVLPKNATDASEIQWVEVPDCFCFHLWNAWEEPETDEVVVIGSCMTPPDSIF--- 430 (590)
T ss_pred eEcHHHHhhCC-CceEECCCCCcEEEEEECCCCCCCceEEEecCCcEEEecccccccCCCCeEEEEEecccChhhhc---
Confidence 99999998764 789999999999999999976556899999999999999999996 467999999987643211
Q ss_pred hhhhccccCcceEEEEEEeCCCCceeEEeccC---CCccCcccCCCCCCCCcceEEEeccCCCCCcCeEEEEEcCCCCcc
Q 019900 158 AVKEKLENFSNELYEMRFNLKTGLASQKRLSA---SAVDFPRVNECYTGRKQRYVYGTILDSIAKVTGIIKFDLHAEPDE 234 (334)
Q Consensus 158 ~~~~~~~~~~~~l~R~~idl~~g~~~~~~l~~---~~~EfP~in~~~~G~~yry~y~~~~~~~~~~~~l~k~D~~t~~~~ 234 (334)
........++|+||+|||++|+++++.+.+ .++|||+||+++.||+|||+|+++.++...+++|+|+|+++|+.
T Consensus 431 --~~~~~~~~~~L~r~ridl~tg~~~~~~l~~~~~~~~EFP~In~~~~Grk~Ry~Y~~~~~~~~~~~givK~Dl~tg~~- 507 (590)
T PLN02258 431 --NESDESLRSVLSEIRLNLRTGESTRRPIISGEQVNLEAGMVNRNLLGRKTRYAYLAIAEPWPKVSGFAKVDLSTGEV- 507 (590)
T ss_pred --ccccccccceEEEEEEECCCCceeeeEeecCCCcccccceECHHHCCCccceEEEeccCCCCCCCeEEEEECCCCcE-
Confidence 011123568999999999999998888766 79999999999999999999999877667799999999998763
Q ss_pred ccceeccCCceeeEEEcCCCCcccceEEeeCCCCCCCCCCCeEEEEEEEeCCCCCcEEEEEeCCCCCCCceEEEEcCCcC
Q 019900 235 EKTKLEVGGNVRGIFDLGPGRFGSEAVFVPREPGTSSEEDVGYLIFFSHDEKTGKSSVNVIDAKTMSADPVAVVELPHRV 314 (334)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~EPvFVPr~~~~~~~EDDG~lL~~v~d~~~~~s~L~VlDA~~l~~gpvAr~~Lp~~i 314 (334)
+.|++|+++|+|||+||||+++ +++|||||||++|+|..+++|+|+||||++|++ |||++||++|
T Consensus 508 ------------~~~~~g~g~~~gEPvFVPr~~~-~~~EDDGylls~V~d~~~~~SeL~IlDA~~l~~--VArv~LP~rV 572 (590)
T PLN02258 508 ------------KKYIYGEGRYGGEPFFVPRGSG-SEAEDDGYILAFVHDEEKGKSELQVVNAVNLEL--EATVKLPSRV 572 (590)
T ss_pred ------------EEEECCCCccccCCEeccCCCC-CcccCCcEEEEEEEECCCCceEEEEEeCCCCcc--cEEEECCCCC
Confidence 5699999999999999999643 335999999999999999999999999999984 9999999999
Q ss_pred CCCcCccCcChhhHHHh
Q 019900 315 PYGFHAFFVSEEQLEEQ 331 (334)
Q Consensus 315 P~gfHG~w~~~~~~~~~ 331 (334)
|+||||+|+++.+|.+|
T Consensus 573 P~GFHG~wv~~~~l~~q 589 (590)
T PLN02258 573 PYGFHGTFISAEDLLKQ 589 (590)
T ss_pred CCcccccccCHHHHhhc
Confidence 99999999999999887
No 3
>COG3670 Lignostilbene-alpha,beta-dioxygenase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=1.3e-81 Score=598.39 Aligned_cols=308 Identities=39% Similarity=0.672 Sum_probs=269.0
Q ss_pred CCCCCC-CCCCCCCCCeecCCCCcEEEEEeecCCCcEEEEEEcCCCCeEeeEEEEcCCCccccccccCCCEEEEEeCCee
Q 019900 2 LDYDKR-LQHSFTAHPKVDPYTGEMFTFGYAHTPPYITYRVISKDGFMHDPVPITVSDPIMMHDFAITENYAIFMDLPLY 80 (334)
Q Consensus 2 ~d~~g~-l~~~~tAHPk~Dp~tG~l~~fg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~iHdfa~Teny~V~~~~P~~ 80 (334)
.+|+|. +..+||||||+||.||||+|||++...++++|++++++|++++.+.+++|.++|||||++|+||+||+++|+.
T Consensus 170 ~~~~g~~~g~~fsAHPkvDp~tgel~~fg~s~~~~~l~~~~v~~~G~l~r~~~i~lpg~~~~HDFa~T~~y~If~~~Pv~ 249 (490)
T COG3670 170 EDFGGDPLGGPFSAHPKVDPDTGELFNFGYSFALPYLTYYVVDADGELRRTVDIPLPGPPMMHDFAITENYLIFFDLPVT 249 (490)
T ss_pred hhcCCCCCCCccccCccCCCCCceEEEEEeccCCCeeEEEEECCCCcEEEeeeeecCCCccceeeeecCceEEEEeCccc
Confidence 467774 4468999999999999999999999878999999999999999999999999999999999999999999999
Q ss_pred cCH-HHHhhc--CceeeEEcCCCCcEEEEEeCCCCCCCceEEEEcCCeeEEcccceeecC-CeEEEEEEecCCCCccc-c
Q 019900 81 FRP-KEMVKE--NKLIFTFDDTKKARFGILPRYAKNEAQMKWFELPNCFIFHNANAWEEE-DEVVLITCRLDKPDLDM-V 155 (334)
Q Consensus 81 ~~~-~~~~~~--~~~~~~~~~~~~tr~~vipR~~~~~~~v~~~~~~~~f~fH~~NAyE~~-~~ivvd~~~~~~~~~~~-~ 155 (334)
+|+ .++|.. ...++.|+|+.||||+||||.+ + +++||||+++||+||+.||||++ +.|.+|.+++++..... .
T Consensus 250 ~d~~p~ll~~~~~~~~~~~~pe~ptri~V~pR~g-~-~~irwfE~~p~fvfH~~NAye~~d~~v~~d~~~~~~~~~~~~~ 327 (490)
T COG3670 250 FDPVPRLLGRPADGHAMRWRPELPTRILVLPREG-D-SEIRWFEAEPGFVFHFLNAYEEGDEVVLVDFLRYDDFSQTLDT 327 (490)
T ss_pred ccchhHHhcCcccccceeecCCCCcEEEEEccCC-C-CceeEEecCCeEEEEecceeecCCCcEEEEEEeeccccccccc
Confidence 995 444432 3468999999999999999996 3 68999999999999999999996 67889999998764321 1
Q ss_pred cchhhhc--cccCcceEEEEEEeCCCCceeEEeccCCCccCcccCCCCCCCCcceEEEeccCC-CCCc---CeEEEEEcC
Q 019900 156 NGAVKEK--LENFSNELYEMRFNLKTGLASQKRLSASAVDFPRVNECYTGRKQRYVYGTILDS-IAKV---TGIIKFDLH 229 (334)
Q Consensus 156 ~~~~~~~--~~~~~~~l~R~~idl~~g~~~~~~l~~~~~EfP~in~~~~G~~yry~y~~~~~~-~~~~---~~l~k~D~~ 229 (334)
.+..... .....++|+||+|||++|++.++.+.++.+|||+||+++.|++|||+|++...+ ...+ +.|+|+|++
T Consensus 328 ~~~~~~g~~~~~a~~~L~R~~lnl~tg~v~~~~~~~r~~EFP~in~~~~G~p~RY~Y~~~~rp~~~l~~g~~~l~k~D~~ 407 (490)
T COG3670 328 LGEGPGGDFRTLAPPRLHRWTLNLKTGKVAEEQLDDRACEFPRINPRYVGQPYRYTYMSGARPGTFLFQGLQTLAKHDLE 407 (490)
T ss_pred ccccccccccccCCCcceEEEEccccchhHHHhhhhhhcccCccChhhcCCceEEEEEecccCCccchhhcceeEEEecc
Confidence 1111110 112369999999999999999999999999999999999999999999997653 2334 449999999
Q ss_pred CCCccccceeccCCceeeEEEcCCCCcccceEEeeCCCCCCCCCCCeEEEEEEEeCCCCCcEEEEEeCCCCCCCceEEEE
Q 019900 230 AEPDEEKTKLEVGGNVRGIFDLGPGRFGSEAVFVPREPGTSSEEDVGYLIFFSHDEKTGKSSVNVIDAKTMSADPVAVVE 309 (334)
Q Consensus 230 t~~~~~~~~~~~~~~~~~~~~~~~~~~~~EPvFVPr~~~~~~~EDDG~lL~~v~d~~~~~s~L~VlDA~~l~~gpvAr~~ 309 (334)
|++. +.+.+++++|+|||+||||+ | +++|||||||++|+|.+.++|+|+||||+++++|||||++
T Consensus 408 tg~~-------------~~~~~g~~~y~~E~vfvPrp-g-~~~EdDGwLl~~vyd~~~~~Sel~v~DA~~~~~epIa~l~ 472 (490)
T COG3670 408 TGTS-------------QVYSFGPRGYGSEPVFVPRP-G-SSAEDDGWLLTLVYDGDRHASELLVFDAQRVTAEPIARLA 472 (490)
T ss_pred CCcE-------------EEEecCCCCcccccccccCC-C-CCcCCCcEEEEEEEecCCCcceEEEEecccCCCCcceEEe
Confidence 9874 57999999999999999996 5 6799999999999999999999999999999999999999
Q ss_pred cCCcCCCCcCccCcChh
Q 019900 310 LPHRVPYGFHAFFVSEE 326 (334)
Q Consensus 310 Lp~~iP~gfHG~w~~~~ 326 (334)
||++||+||||+|++.+
T Consensus 473 Lp~~vP~gfHG~w~~~~ 489 (490)
T COG3670 473 LPQRVPYGFHGNWVPTE 489 (490)
T ss_pred ccccccccccccccccc
Confidence 99999999999999875
No 4
>PF03055 RPE65: Retinal pigment epithelial membrane protein; InterPro: IPR004294 Carotenoids such as beta-carotene, lycopene, lutein and beta-cryptoxanthine are produced in plants and certain bacteria, algae and fungi, where they function as accessory photosynthetic pigments and as scavengers of oxygen radicals for photoprotection. They are also essential dietary nutrients in animals. Carotenoid oxygenases cleave a variety of carotenoids into a range of biologically important products, including apocarotenoids in plants that function as hormones, pigments, flavours, floral scents and defence compounds, and retinoids in animals that function as vitamins, visual pigments and signalling molecules []. Examples of carotenoid oxygenases include: Beta-carotene-15,15'-monooxygenase (BCDO1; 1.14.99.36 from EC) from animals, which cleaves beta-carotene symmetrically at the central double bond to yield two molecules of retinal []. Beta-carotene-9',10'-dioxygenase (BCDO2) from animals, which cleaves beta-carotene asymmetrically to apo-10'-beta-carotenal and beta-ionone, the latter being converted to retinoic acid. Lycopene is also oxidatively cleaved []. 9-cis-epoxycarotenoid dioxygenase from plants, which cleaves 9-cis xanthophylls to xanthoxin, a precursor of the hormone abscisic acid []. Apocarotenoid-15,15'-oxygenase from bacteria and cyanobacteria, which converts beta-apocarotenals rather than beta-carotene into retinal. This protein has a seven-bladed beta-propeller structure with four hisitidines that hold the iron active centre []. Retinal pigment RPE65 from animals, which in its soluble form binds all-trans retinol, and in its membrane-bound form binds all-trans retinyl esters. RPE65 is important for the production of 11-cis retinal during visual pigment regeneration []. ; PDB: 3NPE_A 2BIX_B 2BIW_A 3KVC_B 3FSN_B.
Probab=100.00 E-value=1.1e-78 Score=608.08 Aligned_cols=308 Identities=41% Similarity=0.751 Sum_probs=238.9
Q ss_pred CCCCCCCC-CCCCCCCeecCCCCcEEEEEeecCC---CcEEEEEEcCCCCeEeeEEE-EcCCCccccccccCCCEEEEEe
Q 019900 2 LDYDKRLQ-HSFTAHPKVDPYTGEMFTFGYAHTP---PYITYRVISKDGFMHDPVPI-TVSDPIMMHDFAITENYAIFMD 76 (334)
Q Consensus 2 ~d~~g~l~-~~~tAHPk~Dp~tG~l~~fg~~~~~---~~~~~~~~~~~g~~~~~~~~-~~~~~~~iHdfa~Teny~V~~~ 76 (334)
+||+|.|. ..||||||+||+||++||||++.++ +.+++++++++|++++..+. ++|.++|||||+|||||+||++
T Consensus 156 ~~~~~~l~~~~~tAHp~~Dp~tg~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iHdf~vT~~Y~V~~~ 235 (486)
T PF03055_consen 156 FDFDGKLPGQPFTAHPKIDPETGELYNFGYSLGPEGSPKLTVYEIDPDGKKIHRVPSFPLPRPSYIHDFAVTENYVVFPD 235 (486)
T ss_dssp EEGGGTSSTS---S--EEETTTTTEEEEEEECSSTTSEEEEEEEE-TTSEEEEEEEESCCCS-B-----EE-SSEEEEEE
T ss_pred ccccccccCcccccCceEcccCCcEEEEEEEeccCCCCcEEEEEEcCccceeEEeeeccCCCCcccccccccCceEEEEE
Confidence 57899998 6899999999999999999998643 68999999999988877776 8999999999999999999999
Q ss_pred CCeecCHHHHhhcCc--eeeEEcCCCCcEEEEEeCCCCCCCceEEEEcCCeeEEcccceeecCC---eEEEEEEecCCCC
Q 019900 77 LPLYFRPKEMVKENK--LIFTFDDTKKARFGILPRYAKNEAQMKWFELPNCFIFHNANAWEEED---EVVLITCRLDKPD 151 (334)
Q Consensus 77 ~P~~~~~~~~~~~~~--~~~~~~~~~~tr~~vipR~~~~~~~v~~~~~~~~f~fH~~NAyE~~~---~ivvd~~~~~~~~ 151 (334)
+|+.+|+.+++++.. .++.|+|+++++|+||||++++ ..++|+++|+||+||++||||++| +||+|+|+|++..
T Consensus 236 ~P~~~~~~~~~~g~~~~~~~~~~p~~~t~~~VipR~~~~-~~v~~~~~~~~~~~H~~NAyE~~dg~~~iv~d~~~~~~~~ 314 (486)
T PF03055_consen 236 NPLRFDPERLLLGGSPIDCLKWDPERPTRFHVIPRDGGK-SPVRWFEAPPFFVFHFVNAYEDDDGGGEIVLDACRYDDPE 314 (486)
T ss_dssp -SEEE-HHHHHTTCCTGGCEEE-TTS-EEEEEEETTTSC-CCEEEEEETTCEEEEEEEEEEETTT-TEEEEEEEEECSSS
T ss_pred CCeEECHHHHhhCCcccceEEECCCCCeEEEEEECcCCC-ceeEEEecCChhhccccceeecCCCceEEEEEEeecCCcc
Confidence 999999999987542 6899999999999999999754 689999999999999999999976 9999999999876
Q ss_pred ccc--ccchhhh----ccccCcceEEEEEEeCC--CCceeEEeccCC-CccCcccCCCCCCCCcceEEEeccCC----CC
Q 019900 152 LDM--VNGAVKE----KLENFSNELYEMRFNLK--TGLASQKRLSAS-AVDFPRVNECYTGRKQRYVYGTILDS----IA 218 (334)
Q Consensus 152 ~~~--~~~~~~~----~~~~~~~~l~R~~idl~--~g~~~~~~l~~~-~~EfP~in~~~~G~~yry~y~~~~~~----~~ 218 (334)
+.. ..+++.. ......++|+||+||+. +++++.+.|.+. ++|||+||+++.|++|||+|+++... ..
T Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~l~R~~idl~~~~~~~~~~~l~~~~~~EfP~in~~~~g~~~ry~Y~~~~~~~~~~~~ 394 (486)
T PF03055_consen 315 FLDSFYLDNLRPDGMDFNSDSPGRLRRYRIDLDSKTGRVSEEPLDDGNPCEFPRINPRYSGRPYRYVYAVGMDPERSPGF 394 (486)
T ss_dssp -CGCSCHHHHCC-HHHCCCS-EEEEEEEEEETT--TCEEEEEEEETTEEEEEEEE-GGGTTS--SEEEEEEECSCTS---
T ss_pred cccccchhcccccccccccCCCceEEEEEEccccccceeEHhHhccCCCcccceeCcccCCCcccEEEEEeecccCCcCc
Confidence 532 1122221 22346799999999999 888888888887 69999999999999999999876543 24
Q ss_pred CcCeEEEEEcCCCCccccceeccCCceeeEEEcCCCCcccceEEeeCCCCCCCCCCCeEEEEEEEeCCCCCcEEEEEeCC
Q 019900 219 KVTGIIKFDLHAEPDEEKTKLEVGGNVRGIFDLGPGRFGSEAVFVPREPGTSSEEDVGYLIFFSHDEKTGKSSVNVIDAK 298 (334)
Q Consensus 219 ~~~~l~k~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~EPvFVPr~~~~~~~EDDG~lL~~v~d~~~~~s~L~VlDA~ 298 (334)
++++|+|+|++|++. +.|.++++++++||+||||+ + +.+|||||||++|+|..+++|+|+||||+
T Consensus 395 ~~~~l~k~D~~tg~~-------------~~~~~~~~~~~~EpvFVPr~-~-~~~EdDG~Ll~~v~~~~~~~s~l~VlDA~ 459 (486)
T PF03055_consen 395 PFNGLVKVDLETGEV-------------QRWSFGPGCFPGEPVFVPRP-G-GAEEDDGYLLSVVYDSDTNRSELLVLDAK 459 (486)
T ss_dssp EEEEEEEEETTTTEE-------------EEEE-TTTEEE--EEEEE-T-T-S-STT-EEEEEEEEETTTTCEEEEEEETT
T ss_pred CCCEEEEEecccccc-------------eEEECCCCceecceEeccCC-C-CCCCCceEEEEEEEECCCCccEEEEEeCC
Confidence 689999999998763 57999999999999999996 4 56899999999999999999999999999
Q ss_pred CCCCCceEEEEcCCcCCCCcCccCcCh
Q 019900 299 TMSADPVAVVELPHRVPYGFHAFFVSE 325 (334)
Q Consensus 299 ~l~~gpvAr~~Lp~~iP~gfHG~w~~~ 325 (334)
+|++|||||++||++||+||||+|+++
T Consensus 460 ~l~~GPvAr~~lP~~vP~gfHG~w~~~ 486 (486)
T PF03055_consen 460 DLEEGPVARVELPHRVPYGFHGSWVPE 486 (486)
T ss_dssp TTCE--EEEEEESS---S-SEEEEEE-
T ss_pred CCCcCceEEEECCCCCCCCccccccCC
Confidence 999999999999999999999999874
No 5
>PLN02969 9-cis-epoxycarotenoid dioxygenase
Probab=100.00 E-value=2.3e-73 Score=579.08 Aligned_cols=302 Identities=24% Similarity=0.434 Sum_probs=251.3
Q ss_pred CCCCCCCeecCCCCcEEEEEeecC-----CCcEEEEEEcCCCCeEeeEEEEcCCCccccccccCCCEEEEEeCCeecCHH
Q 019900 10 HSFTAHPKVDPYTGEMFTFGYAHT-----PPYITYRVISKDGFMHDPVPITVSDPIMMHDFAITENYAIFMDLPLYFRPK 84 (334)
Q Consensus 10 ~~~tAHPk~Dp~tG~l~~fg~~~~-----~~~~~~~~~~~~g~~~~~~~~~~~~~~~iHdfa~Teny~V~~~~P~~~~~~ 84 (334)
.+||||||+||.||+|++|+++.+ .+.+++|++|++|++.++.++++|.++|||||+|||||+||+++|+++|+.
T Consensus 254 ~~ftAHpK~DP~tg~lv~f~~~~~~~~~~~~~~~~y~~d~~G~~~~~~~~~~p~~~~iHDfaiTeny~Vf~~~P~~~d~~ 333 (610)
T PLN02969 254 KRLLSHYKIDGRRNRLLVVTCNAEDMLLPRSNFTFYEFDADFKLVQRKEFKLDDHLMIHDWAFTDTHYVLLANRVKLDVP 333 (610)
T ss_pred ccccccCCcCCCCCCEEEEEeccccccCCCceeEEEEECCCCCEecceeecCCCcceeeeeeccCCEEEEEECceecCHH
Confidence 479999999999999999999752 367999999999999999999999999999999999999999999999998
Q ss_pred HHhh---cCc---eeeEEcCCCCc-EEEEEeCCCCCC-CceEE---EEcC-CeeEEcccceeecC---C--eEEEEEEe-
Q 019900 85 EMVK---ENK---LIFTFDDTKKA-RFGILPRYAKNE-AQMKW---FELP-NCFIFHNANAWEEE---D--EVVLITCR- 146 (334)
Q Consensus 85 ~~~~---~~~---~~~~~~~~~~t-r~~vipR~~~~~-~~v~~---~~~~-~~f~fH~~NAyE~~---~--~ivvd~~~- 146 (334)
+++. |.. .+|+|+|++++ +|+||||++++. ..++| +++| +||+||++||||++ | +||+|+|.
T Consensus 334 ~~l~~~~G~~~~~~~l~wdp~~~t~~~~VipR~~~~~~~~~~W~v~~e~~~~~f~fH~~NAfEe~~~~g~~~Ivvd~~~~ 413 (610)
T PLN02969 334 GSLLAMAGLSPMISALAVDPSRPSSPVYLLPRFPEKEAGGRDWRVPVEVPSQLWLIHVGNAYEERDDRGNLRIQLHASAC 413 (610)
T ss_pred HHHHHhhcCCCchheeEECCCCCccEEEEEECcCCCcccceeeeeEEeeCCCeEEEeccceeecCCCCCceEEEEEEecc
Confidence 6542 222 36899999995 899999997542 57899 9998 59999999999963 3 59999974
Q ss_pred -cCCCCcc-c-----ccchhhhc------cccCcceEEEEEEeCC-CCce---eEEecc---CCCccCcccCCCCCCCCc
Q 019900 147 -LDKPDLD-M-----VNGAVKEK------LENFSNELYEMRFNLK-TGLA---SQKRLS---ASAVDFPRVNECYTGRKQ 206 (334)
Q Consensus 147 -~~~~~~~-~-----~~~~~~~~------~~~~~~~l~R~~idl~-~g~~---~~~~l~---~~~~EfP~in~~~~G~~y 206 (334)
|+++.+. . ....+.+. .....++|+||+||+. +|++ +.+.|. +.++|||+||+++.||+|
T Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~r~~idl~~~g~~~~~~~~~l~~~~~~~~EFP~In~~~~Gr~~ 493 (610)
T PLN02969 414 SYQWFSFHRMFGYDWQNKKLDPSVMNNAKGKELLPHLVQVSIDLDRTGDCRSCDVEPLSNQWEKPADFPVINPSFSGQKN 493 (610)
T ss_pred ccccccccccccccccccccCcchhcccCcccccceEEEEEEeCCcCCccccccceeeccccccccccCccChhHCCCcc
Confidence 6554331 0 00000100 0113579999999996 6765 346775 789999999999999999
Q ss_pred ceEEEeccCC------CCCcCeEEEEEcCCCCccccceeccCCceeeEEEcCCCCcccceEEeeCC--CCCCCCCCCeEE
Q 019900 207 RYVYGTILDS------IAKVTGIIKFDLHAEPDEEKTKLEVGGNVRGIFDLGPGRFGSEAVFVPRE--PGTSSEEDVGYL 278 (334)
Q Consensus 207 ry~y~~~~~~------~~~~~~l~k~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~EPvFVPr~--~~~~~~EDDG~l 278 (334)
||+|+++.++ ...+++|+|+|+++++. +.|++++++++||||||||+ |+ +++||||||
T Consensus 494 ry~Y~~~~~~~~~~~~~~~~~~l~K~D~~tg~~-------------~~w~~g~~~~~~EPvFVPr~~~p~-~~~EDDG~L 559 (610)
T PLN02969 494 EYTYAAAASGSRKTLPHFPFDSVVKLDVPDGSA-------------RSWSTGARRFVGEPVFVPRKSSQG-GGEEDDGYV 559 (610)
T ss_pred eEEEEeeecCCCcccccCCcCeEEEEECCCCCE-------------EEEEeCCCCcccCCEEecCCCCCC-CCccCCcEE
Confidence 9999987642 23589999999998763 56999999999999999995 23 568999999
Q ss_pred EEEEEeCCCCCcEEEEEeCCCCCCC--ceEEEEcCCcC--CCCcCccCcCh
Q 019900 279 IFFSHDEKTGKSSVNVIDAKTMSAD--PVAVVELPHRV--PYGFHAFFVSE 325 (334)
Q Consensus 279 L~~v~d~~~~~s~L~VlDA~~l~~g--pvAr~~Lp~~i--P~gfHG~w~~~ 325 (334)
|++|+|..+++|+|+||||++|++| ||||++||++| |+||||+|++.
T Consensus 560 l~~v~d~~~~~S~LvILDAk~~~eg~~PVAri~LP~~v~~P~GfHG~w~~~ 610 (610)
T PLN02969 560 LVVEYAVSDERCYLVILDAKRIGERDAVVAKLEVPKHLTFPMGFHGFWADE 610 (610)
T ss_pred EEEEEECCCCceEEEEEeCCCCcccCceeEEEECCcccCCCccccccccCC
Confidence 9999999999999999999999996 99999999998 99999999874
No 6
>KOG1285 consensus Beta, beta-carotene 15,15'-dioxygenase and related enzymes [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.7e-47 Score=381.08 Aligned_cols=308 Identities=42% Similarity=0.659 Sum_probs=263.7
Q ss_pred CCCCCCCCCCCCCCCCeecCCCCcEEEEEeecCC-CcEEEEEEcCCCCeEeeEEEEcCCCccccccccCCCEEEEEeCCe
Q 019900 1 MLDYDKRLQHSFTAHPKVDPYTGEMFTFGYAHTP-PYITYRVISKDGFMHDPVPITVSDPIMMHDFAITENYAIFMDLPL 79 (334)
Q Consensus 1 ~~d~~g~l~~~~tAHPk~Dp~tG~l~~fg~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~iHdfa~Teny~V~~~~P~ 79 (334)
+.+|+++|.....||||+||.+|+++.+.|+..+ +++.|.++++.|+....+.+....+.|+||||+|||+.|+++.++
T Consensus 269 ~~e~~~~l~~~~~a~pk~~~~~g~~~~~~yd~~~~~~l~~~~~~~~~~k~~~~~~~~~~~t~hh~na~eedg~vi~D~~~ 348 (582)
T KOG1285|consen 269 RFEFPLRLNLSKFAHPKLDPVTGEWFADFYDWVPKPYLIYHKFSKEGGKSVPVEIFPSFPTFHHDNAFEEDGCVVPDLCV 348 (582)
T ss_pred EecCCcccchhhhccCcccccccchhhhhhcccCCCcEEEEEeccccCccCcceeccCcceEEEeeeecccCceEEEEEE
Confidence 4578888888899999999999999999998754 789999999999887666665568999999999999999999999
Q ss_pred ecCHHHHhhcCceeeEEcCCCCcEEEEEeCCCCCCCceEEEEcCCeeEEcccceeecC---CeEEEEEEecCCCCccccc
Q 019900 80 YFRPKEMVKENKLIFTFDDTKKARFGILPRYAKNEAQMKWFELPNCFIFHNANAWEEE---DEVVLITCRLDKPDLDMVN 156 (334)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~tr~~vipR~~~~~~~v~~~~~~~~f~fH~~NAyE~~---~~ivvd~~~~~~~~~~~~~ 156 (334)
..++..|..++. +...+..+..|+++.++...+...++|...+.+++||..|+||+. .+++|...+....+.
T Consensus 349 ~~~~~~~~~~~~-p~~~~~~k~~rfg~~~k~~~d~~~~~~p~~~~~~~~~~~~~~e~~~~~~~~~v~~~~~s~~~~---- 423 (582)
T KOG1285|consen 349 YFDLSEMIRDTS-PLLYDNGKTLRFGLLSKTAPDARRIVWPLSPSKFAFHLWNNWEKKPYDWEVVVIGSCMSSTST---- 423 (582)
T ss_pred Eechhhhhcccc-eeecccccccccccccccCCcccceEEEeccccccccchhhhcccCCCceEEeecccCCccch----
Confidence 999998877654 788899999999999999888889999999999999999999962 245555444332211
Q ss_pred chhhhccccCcceEEEEEEeCCCCceeEEeccC-CCccCcccCCCCCCCCcceEEEeccCCCCCcCeEEEEEcCCCCccc
Q 019900 157 GAVKEKLENFSNELYEMRFNLKTGLASQKRLSA-SAVDFPRVNECYTGRKQRYVYGTILDSIAKVTGIIKFDLHAEPDEE 235 (334)
Q Consensus 157 ~~~~~~~~~~~~~l~R~~idl~~g~~~~~~l~~-~~~EfP~in~~~~G~~yry~y~~~~~~~~~~~~l~k~D~~t~~~~~ 235 (334)
...+..+....+|...++++.+|...++.+.. .++|+++||..+.||+|||+|++..++++.+++++|+|+.+|+.
T Consensus 424 -i~~~~de~~~~~l~e~r~~~~tg~~~~~~~~~~~nl~~~~in~~~~Gkk~ryvY~ai~~~~p~~~g~vKvDl~~g~~-- 500 (582)
T KOG1285|consen 424 -IFRESDELLGNRLEEIRLNLKTGLEFPRPVIPKINLDFGMINRSYLGKKYRYVYGAILDPWPKVSGIVKVDLVTGEV-- 500 (582)
T ss_pred -hhcccccchhceeeeeeecccccccccceeecccccccccccceeecccceEEEEEecCCccCCCeEEEEEecCCce--
Confidence 11122344567899999999998776665554 59999999999999999999999998888899999999999874
Q ss_pred cceeccCCceeeEEEcCCCCcccceEEeeCCCCCCCCCCCeEEEEEEEeCCCCCcEEEEEeCCCCCCCceEEEEcCCcCC
Q 019900 236 KTKLEVGGNVRGIFDLGPGRFGSEAVFVPREPGTSSEEDVGYLIFFSHDEKTGKSSVNVIDAKTMSADPVAVVELPHRVP 315 (334)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~EPvFVPr~~~~~~~EDDG~lL~~v~d~~~~~s~L~VlDA~~l~~gpvAr~~Lp~~iP 315 (334)
..|..+.+++.|||+|||++ + +.+|||||||++|++.++.+|+|+||||++|++ +||+++|.++|
T Consensus 501 -----------~~w~~~~~~~~GEP~FVP~p-~-~~eEDdG~Iv~~v~~~~~~~s~l~ildAK~l~~--~ar~~vp~rvP 565 (582)
T KOG1285|consen 501 -----------KKWREGGGRPGGEPIFVPRP-G-TLEEDDGYIVSVVHDESKEKSFLLILDAKTLEE--VARVEVPTRVP 565 (582)
T ss_pred -----------eeEecCCCccCCCceEecCC-C-CcccCCcEEEEEEEcCCCCcccEEEEeccccce--eeEEecCCCCC
Confidence 35888888888899999995 4 679999999999999999999999999999986 99999999999
Q ss_pred CCcCccCcChhhHHHh
Q 019900 316 YGFHAFFVSEEQLEEQ 331 (334)
Q Consensus 316 ~gfHG~w~~~~~~~~~ 331 (334)
+||||.|++..++..|
T Consensus 566 ~gfHG~f~~~~~~~~~ 581 (582)
T KOG1285|consen 566 YGFHGTFVSTTDLATQ 581 (582)
T ss_pred CccceeEecccccccc
Confidence 9999999999998876
No 7
>KOG1285 consensus Beta, beta-carotene 15,15'-dioxygenase and related enzymes [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.62 E-value=2e-14 Score=144.44 Aligned_cols=204 Identities=20% Similarity=0.276 Sum_probs=126.6
Q ss_pred CCCCCCC--CCCCCCCeecCCCCcEEE-EEee-cCCCc-EEEEEE--cCCCCeE----------eeEEE---EcCCCccc
Q 019900 3 DYDKRLQ--HSFTAHPKVDPYTGEMFT-FGYA-HTPPY-ITYRVI--SKDGFMH----------DPVPI---TVSDPIMM 62 (334)
Q Consensus 3 d~~g~l~--~~~tAHPk~Dp~tG~l~~-fg~~-~~~~~-~~~~~~--~~~g~~~----------~~~~~---~~~~~~~i 62 (334)
+|.+.+. ..++|||+.|+ .|+++| +|.. .+... ..+.++ ...|... +...+ ..+.|.||
T Consensus 179 ~~~k~~v~~~~~gah~~~d~-~G~~~g~~g~~~~~~~~~r~~~~~~~p~~~~~~~~~~~v~~~~~~~a~~~dd~~~p~yv 257 (582)
T KOG1285|consen 179 RFTKTLVQEHTAGAHPHPDE-IGTVYGHFGIARFGLFFARALTVLKNPANGVGLANAGLVWFHNRLLAYSEDDLPYPGYV 257 (582)
T ss_pred ccccceeeeeecccCCcccC-cccEEeeechhhccccccceeEEEecCCCccccccccceEeecceeeeccCCCccceEE
Confidence 4555333 36789999998 599999 6765 43322 222222 2222111 11011 45799999
Q ss_pred cccccCCCEEEEEeCCeecCHHHHhhcC---------ceeeEEcCCCCcEEEEEeCCCCCCCceEEEEcCCeeEEcccce
Q 019900 63 HDFAITENYAIFMDLPLYFRPKEMVKEN---------KLIFTFDDTKKARFGILPRYAKNEAQMKWFELPNCFIFHNANA 133 (334)
Q Consensus 63 Hdfa~Teny~V~~~~P~~~~~~~~~~~~---------~~~~~~~~~~~tr~~vipR~~~~~~~v~~~~~~~~f~fH~~NA 133 (334)
|+||+||||+|++++|+++++.+++... ..++.|.|....+++++.+.+....++..+ +++++|||+||
T Consensus 258 hs~G~tenyi~~~e~~~~l~~~~~a~pk~~~~~g~~~~~~yd~~~~~~l~~~~~~~~~~k~~~~~~~--~~~~t~hh~na 335 (582)
T KOG1285|consen 258 HSFGDTENYIGRFEFPLRLNLSKFAHPKLDPVTGEWFADFYDWVPKPYLIYHKFSKEGGKSVPVEIF--PSFPTFHHDNA 335 (582)
T ss_pred eecCCccceEeEecCCcccchhhhccCcccccccchhhhhhcccCCCcEEEEEeccccCccCcceec--cCcceEEEeee
Confidence 9999999999999999999999886522 125789998899999999987543333322 34999999999
Q ss_pred eecCCeEEEEEEecCCCCcccccchhhhccccCcceEEEEEEeCCCCceeEE---eccCCCccCcccCCCCCCCCcceEE
Q 019900 134 WEEEDEVVLITCRLDKPDLDMVNGAVKEKLENFSNELYEMRFNLKTGLASQK---RLSASAVDFPRVNECYTGRKQRYVY 210 (334)
Q Consensus 134 yE~~~~ivvd~~~~~~~~~~~~~~~~~~~~~~~~~~l~R~~idl~~g~~~~~---~l~~~~~EfP~in~~~~G~~yry~y 210 (334)
||+++.||+|+|++.+...-... .........+.-|+.++.++.....+ .+....+.|| ...++.-++|...+
T Consensus 336 ~eedg~vi~D~~~~~~~~~~~~~---~~p~~~~~~k~~rfg~~~k~~~d~~~~~~p~~~~~~~~~-~~~~~e~~~~~~~~ 411 (582)
T KOG1285|consen 336 FEEDGCVVPDLCVYFDLSEMIRD---TSPLLYDNGKTLRFGLLSKTAPDARRIVWPLSPSKFAFH-LWNNWEKKPYDWEV 411 (582)
T ss_pred ecccCceEEEEEEEechhhhhcc---cceeecccccccccccccccCCcccceEEEecccccccc-chhhhcccCCCceE
Confidence 99999999999999876511100 00111123444555555554432221 1233345666 33333336666554
Q ss_pred Eec
Q 019900 211 GTI 213 (334)
Q Consensus 211 ~~~ 213 (334)
.+.
T Consensus 412 ~v~ 414 (582)
T KOG1285|consen 412 VVI 414 (582)
T ss_pred Eee
Confidence 443
No 8
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=49.35 E-value=1.2e+02 Score=29.41 Aligned_cols=74 Identities=23% Similarity=0.311 Sum_probs=44.3
Q ss_pred CCcceEEEeccCCCCCcCeEEEEEcCCCCccccceeccCCceeeEEEcCCCCcccceEEeeCCCCCCCCCCCeEEEEEEE
Q 019900 204 RKQRYVYGTILDSIAKVTGIIKFDLHAEPDEEKTKLEVGGNVRGIFDLGPGRFGSEAVFVPREPGTSSEEDVGYLIFFSH 283 (334)
Q Consensus 204 ~~yry~y~~~~~~~~~~~~l~k~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~EPvFVPr~~~~~~~EDDG~lL~~v~ 283 (334)
..-||+|.++.+ ..|.++|+.+++... ....| .+|.=|.= +.|.-||++..+
T Consensus 46 ~Dgr~~yv~~rd-----g~vsviD~~~~~~v~------------~i~~G-----~~~~~i~~------s~DG~~~~v~n~ 97 (369)
T PF02239_consen 46 PDGRYLYVANRD-----GTVSVIDLATGKVVA------------TIKVG-----GNPRGIAV------SPDGKYVYVANY 97 (369)
T ss_dssp T-SSEEEEEETT-----SEEEEEETTSSSEEE------------EEE-S-----SEEEEEEE--------TTTEEEEEEE
T ss_pred CCCCEEEEEcCC-----CeEEEEECCcccEEE------------EEecC-----CCcceEEE------cCCCCEEEEEec
Confidence 446789988643 479999999876421 22222 33443332 234458877766
Q ss_pred eCCCCCcEEEEEeCCCCCCCceEEEEcC
Q 019900 284 DEKTGKSSVNVIDAKTMSADPVAVVELP 311 (334)
Q Consensus 284 d~~~~~s~L~VlDA~~l~~gpvAr~~Lp 311 (334)
.. ..+.|+|+++++ +|.++...
T Consensus 98 ~~----~~v~v~D~~tle--~v~~I~~~ 119 (369)
T PF02239_consen 98 EP----GTVSVIDAETLE--PVKTIPTG 119 (369)
T ss_dssp ET----TEEEEEETTT----EEEEEE--
T ss_pred CC----CceeEecccccc--ceeecccc
Confidence 43 589999999997 58888765
No 9
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=39.89 E-value=3.6e+02 Score=26.14 Aligned_cols=38 Identities=34% Similarity=0.421 Sum_probs=26.7
Q ss_pred CeEEEEEEEeCCCC-----CcEEEEEeCCCCCCCceEEEEcCCcC
Q 019900 275 VGYLIFFSHDEKTG-----KSSVNVIDAKTMSADPVAVVELPHRV 314 (334)
Q Consensus 275 DG~lL~~v~d~~~~-----~s~L~VlDA~~l~~gpvAr~~Lp~~i 314 (334)
.|-|.++.+..... .+|++++|.++=+. |+|+.|++.+
T Consensus 249 ~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~kr--v~Ri~l~~~~ 291 (342)
T PF06433_consen 249 SGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKR--VARIPLEHPI 291 (342)
T ss_dssp TTEEEEEEEE--TT-TTS-EEEEEEEETTTTEE--EEEEEEEEEE
T ss_pred cCeEEEEecCCCCCCccCCceEEEEEECCCCeE--EEEEeCCCcc
Confidence 34566666655432 37999999998876 9999998653
No 10
>PF09843 DUF2070: Predicted membrane protein (DUF2070); InterPro: IPR019204 This domain of unknown function is found in various bacterial and archael hypothetical proteins, as well as in prokaryotic polyketide synthase.
Probab=32.92 E-value=45 Score=28.97 Aligned_cols=50 Identities=14% Similarity=0.182 Sum_probs=37.8
Q ss_pred EEcCCCCcccceEEeeCCCCCCCCCCCeEEEEEEEeCCCCCcEEEEEeCCCCCCC
Q 019900 249 FDLGPGRFGSEAVFVPREPGTSSEEDVGYLIFFSHDEKTGKSSVNVIDAKTMSAD 303 (334)
Q Consensus 249 ~~~~~~~~~~EPvFVPr~~~~~~~EDDG~lL~~v~d~~~~~s~L~VlDA~~l~~g 303 (334)
+.++-|+..++|.+-+. . +=+++-+.+++.+....++.|+++|+.+|+.|
T Consensus 39 ~~~~~G~~~~~~~~~~~-~----~lg~~gi~~~~v~~~g~~~~lv~~DsNNm~~~ 88 (179)
T PF09843_consen 39 YPLEVGYAEAEPFLGEH-E----GLGIGGISALVVEVGGQRSALVLADSNNMEPG 88 (179)
T ss_pred cccccceEeccCCCCCC-C----CcCccccEEEEEEeCCcEEEEEEEECCCCCHH
Confidence 55566666677764433 2 35678889999998889999999999999864
No 11
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=29.61 E-value=81 Score=30.68 Aligned_cols=80 Identities=21% Similarity=0.244 Sum_probs=39.4
Q ss_pred cceEEEeccCCCCCcCeEEEEEcCCCCccccceeccCCceeeEEEcCCCCcccceEEeeCCCCCCCCCCCeEEEEEEEeC
Q 019900 206 QRYVYGTILDSIAKVTGIIKFDLHAEPDEEKTKLEVGGNVRGIFDLGPGRFGSEAVFVPREPGTSSEEDVGYLIFFSHDE 285 (334)
Q Consensus 206 yry~y~~~~~~~~~~~~l~k~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~EPvFVPr~~~~~~~EDDG~lL~~v~d~ 285 (334)
-+|+|....-.. -.+.|.-+|.++.+.. + ....+++.-+-.+-|=++ ++ +|...+++.
T Consensus 280 s~~vwvd~~~~~-~~~~v~viD~~tl~~~-~-----------~i~~~~~~~~~h~ef~~d--------G~-~v~vS~~~~ 337 (369)
T PF02239_consen 280 SRYVWVDTFLNP-DADTVQVIDKKTLKVV-K-----------TITPGPGKRVVHMEFNPD--------GK-EVWVSVWDG 337 (369)
T ss_dssp -SEEEEE-TT-S-SHT-EEEEECCGTEEE-E------------HHHHHT--EEEEEE-TT--------SS-EEEEEEE--
T ss_pred CccEEeeccCCC-CCceEEEEECcCccee-E-----------EEeccCCCcEeccEECCC--------CC-EEEEEEecC
Confidence 467887632111 2578888998875421 1 111112211112222222 22 355555554
Q ss_pred CCCCcEEEEEeCCCCCCCceEEEEcCC
Q 019900 286 KTGKSSVNVIDAKTMSADPVAVVELPH 312 (334)
Q Consensus 286 ~~~~s~L~VlDA~~l~~gpvAr~~Lp~ 312 (334)
+. .|+|+|++++++ ++|+.++.
T Consensus 338 ~~---~i~v~D~~Tl~~--~~~i~~~t 359 (369)
T PF02239_consen 338 NG---AIVVYDAKTLKE--KKRIPVPT 359 (369)
T ss_dssp TT---EEEEEETTTTEE--EEEEE--S
T ss_pred CC---EEEEEECCCcEE--EEEEEeeC
Confidence 33 999999999997 99999654
No 12
>PF08262 Lem_TRP: Leucophaea maderae tachykinin-related peptide ; InterPro: IPR013206 These peptides are designated Leucophaea maderae (Madeira cockroach) tachykinin-related peptides (Lem TRPs). Some were isolated from the midgut of L. maderae, whereas others appear to be brain specific. The Lem TRPs of the brain are myotropic and induce increases in the amplitude and frequency of spontaneous contractions and tonus of hindgut muscle in L. maderae []. They were also isolated from brain-corpora, cardiaca-corpora, allata-suboesophageal ganglion extracts of Locusta migratoria (Migratory locust). They stimulate visceral muscle contractions of the oviduct and the foregut of L. migratoria [].
Probab=27.65 E-value=26 Score=15.72 Aligned_cols=7 Identities=43% Similarity=1.042 Sum_probs=4.9
Q ss_pred CCCcCcc
Q 019900 315 PYGFHAF 321 (334)
Q Consensus 315 P~gfHG~ 321 (334)
..||||.
T Consensus 3 smgf~g~ 9 (10)
T PF08262_consen 3 SMGFHGM 9 (10)
T ss_pred ccccccc
Confidence 3688884
No 13
>PF14839 DOR: DOR family
Probab=24.33 E-value=72 Score=28.76 Aligned_cols=14 Identities=29% Similarity=0.321 Sum_probs=12.2
Q ss_pred CCCCCeEEEEEEEe
Q 019900 271 SEEDVGYLIFFSHD 284 (334)
Q Consensus 271 ~~EDDG~lL~~v~d 284 (334)
++|||||||+=+.+
T Consensus 3 e~edD~WilVD~~~ 16 (216)
T PF14839_consen 3 EEEDDEWILVDFID 16 (216)
T ss_pred ccccCCeEEEEecC
Confidence 57999999998877
No 14
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=24.21 E-value=7.1e+02 Score=24.79 Aligned_cols=37 Identities=16% Similarity=0.326 Sum_probs=25.8
Q ss_pred EcCCCCcEEEEEeCCCCCCCceEEEEcCC-eeEEcccceeec
Q 019900 96 FDDTKKARFGILPRYAKNEAQMKWFELPN-CFIFHNANAWEE 136 (334)
Q Consensus 96 ~~~~~~tr~~vipR~~~~~~~v~~~~~~~-~f~fH~~NAyE~ 136 (334)
||++ .+-++|+-|-+ +.+|+||.-+ -=.+|+.|-|..
T Consensus 271 yD~d-t~ivYl~GKGD---~~IRYyEit~d~P~~hyln~f~S 308 (472)
T KOG0303|consen 271 YDPD-TSIVYLCGKGD---SSIRYFEITNEPPFVHYLNTFSS 308 (472)
T ss_pred ecCC-CCEEEEEecCC---cceEEEEecCCCceeEEeccccc
Confidence 4554 45689998753 4799999843 235799999864
No 15
>COG4393 Predicted membrane protein [Function unknown]
Probab=23.46 E-value=1.8e+02 Score=28.07 Aligned_cols=53 Identities=21% Similarity=0.329 Sum_probs=32.6
Q ss_pred eeeEEcCC--CCcEEEEEeCCCCCCCceEEEEcCCeeEEcccceeecCCeEEEEEEe
Q 019900 92 LIFTFDDT--KKARFGILPRYAKNEAQMKWFELPNCFIFHNANAWEEEDEVVLITCR 146 (334)
Q Consensus 92 ~~~~~~~~--~~tr~~vipR~~~~~~~v~~~~~~~~f~fH~~NAyE~~~~ivvd~~~ 146 (334)
..|.|-.+ +-.||.+|+|++.+.+...-|+ +|..=--..=.++||+|+.-.|.
T Consensus 304 HRF~yIA~dGkaVRFflInk~pdr~s~~avfD--AC~iCGd~GYv~e~dqvICv~C~ 358 (405)
T COG4393 304 HRFVYIADDGKAVRFFLINKRPDRLSLGAVFD--ACDICGDQGYVMEGDQVICVRCD 358 (405)
T ss_pred EEEEEEccCCcEEEEEEEecCCCCCCceeeeh--HHHhccccceEeECCEEEEEEcc
Confidence 35777544 4489999999765444445555 35333333334678888876664
No 16
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=21.26 E-value=2e+02 Score=17.53 Aligned_cols=27 Identities=33% Similarity=0.615 Sum_probs=19.2
Q ss_pred CCcEEEEEeCCCCCCCceEEEEcCCcCCCC
Q 019900 288 GKSSVNVIDAKTMSADPVAVVELPHRVPYG 317 (334)
Q Consensus 288 ~~s~L~VlDA~~l~~gpvAr~~Lp~~iP~g 317 (334)
....|.++|+.+.+ .+.++.+. .-|.+
T Consensus 12 ~~~~v~~id~~~~~--~~~~i~vg-~~P~~ 38 (42)
T TIGR02276 12 GSNTVSVIDTATNK--VIATIPVG-GYPFG 38 (42)
T ss_pred CCCEEEEEECCCCe--EEEEEECC-CCCce
Confidence 34588889998876 48888874 55554
No 17
>PF02736 Myosin_N: Myosin N-terminal SH3-like domain; InterPro: IPR004009 This domain has an SH3-like fold. It is found at the N terminus of many but not all myosins. The function of this domain is unknown.; GO: 0003774 motor activity, 0005524 ATP binding, 0016459 myosin complex; PDB: 2EC6_A 2W4H_M 1O1E_P 1O1D_D 1O18_A 1O1C_P 1O1B_D 1O1F_A 2W4A_M 2W4G_M ....
Probab=20.81 E-value=44 Score=21.67 Aligned_cols=26 Identities=27% Similarity=0.310 Sum_probs=17.3
Q ss_pred eEEeeCCCCCCCCCCCeEEEEEEEeCCCCCcEE
Q 019900 260 AVFVPREPGTSSEEDVGYLIFFSHDEKTGKSSV 292 (334)
Q Consensus 260 PvFVPr~~~~~~~EDDG~lL~~v~d~~~~~s~L 292 (334)
-++||. +.+||+++-+.....+.-.+
T Consensus 3 ~vWvpD-------~~egfv~g~I~~~~g~~vtV 28 (42)
T PF02736_consen 3 WVWVPD-------PKEGFVKGEIIEEEGDKVTV 28 (42)
T ss_dssp EEEEEE-------SSSSEEEEEEEEEESSEEEE
T ss_pred EEEEeC-------CcccEEEEEEEEEcCCEEEE
Confidence 367876 35699999998664444333
Done!