Query 019900
Match_columns 334
No_of_seqs 143 out of 1026
Neff 7.6
Searched_HMMs 29240
Date Mon Mar 25 08:46:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019900.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019900hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2biw_A Apocarotenoid-cleaving 100.0 9.6E-83 3.3E-87 635.2 35.0 306 2-325 168-490 (490)
2 3npe_A 9-CIS-epoxycarotenoid d 100.0 5.4E-83 1.9E-87 640.7 32.5 311 1-332 209-528 (529)
3 3kvc_A Retinoid isomerohydrola 100.0 4.4E-76 1.5E-80 592.6 25.2 303 2-325 166-533 (533)
4 1qks_A Cytochrome CD1 nitrite 38.0 2.9E+02 0.01 26.9 13.7 105 172-311 179-285 (567)
5 4guc_A Protein BA_2500; virule 32.4 1.8E+02 0.006 22.6 7.4 49 20-76 34-89 (120)
6 3mbr_X Glutamine cyclotransfer 19.9 4E+02 0.014 23.0 8.3 34 274-311 105-143 (243)
7 3nol_A Glutamine cyclotransfer 18.3 3E+02 0.01 24.2 7.1 22 289-312 145-166 (262)
8 3c75_H MADH, methylamine dehyd 17.6 2.3E+02 0.0078 26.7 6.6 79 207-311 85-168 (426)
9 2xpn_B SPT6, chromatin structu 15.4 52 0.0018 18.1 0.8 11 202-212 11-21 (26)
10 3taw_A Hypothetical glycoside 14.3 2.4E+02 0.0084 25.7 5.7 51 274-325 255-320 (356)
No 1
>2biw_A Apocarotenoid-cleaving oxygenase; non-heme iron, carotenoid cleavage, retinal forma oxidoreductase, dioxygenase; HET: 3ON; 2.39A {Synechocystis SP} PDB: 2bix_A*
Probab=100.00 E-value=9.6e-83 Score=635.18 Aligned_cols=306 Identities=25% Similarity=0.413 Sum_probs=271.9
Q ss_pred CCCCCCC-C-CCCCCCCeecCC------CCcEEEEEeecCCCc-EEEEEEcCCCCeEeeEEEEcCCCccccccccCCCEE
Q 019900 2 LDYDKRL-Q-HSFTAHPKVDPY------TGEMFTFGYAHTPPY-ITYRVISKDGFMHDPVPITVSDPIMMHDFAITENYA 72 (334)
Q Consensus 2 ~d~~g~l-~-~~~tAHPk~Dp~------tG~l~~fg~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~iHdfa~Teny~ 72 (334)
+||+|.| . .+||||||+||. ||||+|||++.+++. ++|++++++|++.+..++++|.++|||||||||||+
T Consensus 168 ~d~~g~l~~~~~~tAHPk~Dp~~~~~~gtgel~~fg~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~HDfaiTeny~ 247 (490)
T 2biw_A 168 DDLGGILAEGQPLSAHPRIDPASTFDGGQPCYVTFSIKSSLSSTLTLLELDPQGKLLRQKTETFPGFAFIHDFAITPHYA 247 (490)
T ss_dssp CCTTTTSCTTCCCCSCCEEESSCTTTTTCCEEEEEEEEESSEEEEEEEEECTTSCEEEEEEEEEESCCCCCCCEECSSEE
T ss_pred eccCCcccCCcccccCceECccccccCCCCeEEEEEecCCCCcEEEEEEECCCCCEEeeEEEeCCCCceEeeeeccCCEE
Confidence 6899999 5 489999999999 999999999986544 899999999999999999999999999999999999
Q ss_pred EEEeCCeecCHHHHhhcCc---eeeEEcCCCCcEEEEEeCCCCCCCceEEEEcCCeeEEcccceeecCCeEEEEEEecCC
Q 019900 73 IFMDLPLYFRPKEMVKENK---LIFTFDDTKKARFGILPRYAKNEAQMKWFELPNCFIFHNANAWEEEDEVVLITCRLDK 149 (334)
Q Consensus 73 V~~~~P~~~~~~~~~~~~~---~~~~~~~~~~tr~~vipR~~~~~~~v~~~~~~~~f~fH~~NAyE~~~~ivvd~~~~~~ 149 (334)
||+++|+++|+.+++.+++ .++.|+|++++||+||||+ + +.++||++|+||+||++||||++|+||+|+|+|++
T Consensus 248 V~~~~P~~~~~~~~~~g~~~~~~~~~~~p~~~tr~~VipR~-~--~~v~~f~~~~~f~fH~~NA~Ee~~~Iv~d~~~~~~ 324 (490)
T 2biw_A 248 IFLQNNVTLNGLPYLFGLRGAGECVQFHPDKPAQIILVPRD-G--GEIKRIPVQAGFVFHHANAFEENGKIILDSICYNS 324 (490)
T ss_dssp EEEECCEEECCHHHHTTSSCGGGGEEECTTSCEEEEEEETT-S--CCCEEEEECCCEEEEEEEEEEETTEEEEEEEEESC
T ss_pred EEEeCCeEEcHHHHhhccCCccceeEeCCCCCcEEEEEECC-C--CccEEEecCCCeEEecccceecCCeEEEEEeccCC
Confidence 9999999999999886542 4799999999999999998 3 46899999999999999999999999999999988
Q ss_pred CCcccccchhhh--ccccCcceEEEEEEeCCCCceeEEeccCCCccCcccCCCCCCCCcceEEEeccC---CCCCcCeEE
Q 019900 150 PDLDMVNGAVKE--KLENFSNELYEMRFNLKTGLASQKRLSASAVDFPRVNECYTGRKQRYVYGTILD---SIAKVTGII 224 (334)
Q Consensus 150 ~~~~~~~~~~~~--~~~~~~~~l~R~~idl~~g~~~~~~l~~~~~EfP~in~~~~G~~yry~y~~~~~---~~~~~~~l~ 224 (334)
..+......... ......++|+||+|||++|+++++.|.+.++|||+||+++.||+|||+|+++.+ ....+++|+
T Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~l~R~~i~l~~g~v~~~~l~~~~~EfP~In~~~~G~~~Ry~Y~~~~~~~~~~~~~~~l~ 404 (490)
T 2biw_A 325 LPQVDTDGDFRSTNFDNLDPGQLWRFTIDPAAATVEKQLMVSRCCEFPVVHPQQVGRPYRYVYMGAAHHSTGNAPLQAIL 404 (490)
T ss_dssp CCCCCTTCCGGGCCGGGSCCCEEEEEEEETTTTEEEEEEEECSCEEEEECCGGGTTSCCSEEEEEECSSSSSCCCCCEEE
T ss_pred cccccccccccccccccCCCceEEEEEEECCCCceEEEeccCCcccccccChhhCCceeeeEEEEeecCCCCCCCCCeEE
Confidence 654111111111 112346899999999999999999999999999999999999999999999875 345689999
Q ss_pred EEEcCCCCccccceeccCCceeeEEEcCCCCcccceEEeeCCCCCCCCCCCeEEEEEEEeCCCCCcEEEEEeCCCCCCCc
Q 019900 225 KFDLHAEPDEEKTKLEVGGNVRGIFDLGPGRFGSEAVFVPREPGTSSEEDVGYLIFFSHDEKTGKSSVNVIDAKTMSADP 304 (334)
Q Consensus 225 k~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~EPvFVPr~~~~~~~EDDG~lL~~v~d~~~~~s~L~VlDA~~l~~gp 304 (334)
|+|++|++. +.|++++++++|||+||||+ + +++|||||||++|+|..+++|+|+||||++|++||
T Consensus 405 K~D~~tg~~-------------~~~~~g~g~~~~EPvFVPrp-~-~~~EDDG~ll~~V~d~~~~~S~l~IlDA~~~~~~p 469 (490)
T 2biw_A 405 KVDLESGTE-------------TLRSFAPHGFAGEPIFVPRP-G-GVAEDDGWLLCLIYKADLHRSELVILDAQDITAPA 469 (490)
T ss_dssp EEETTTTEE-------------EEEECTTTEECCCCEEEECT-T-CCSTTCEEEEEEEEETTTTEEEEEEEETTCTTSCC
T ss_pred EEECCCCCE-------------EEEECCCCccccCCEEecCC-C-CCCCCCcEEEEEEEeCCCCceeEEEEccCCCCcCc
Confidence 999998763 56889999999999999996 4 56899999999999999999999999999999999
Q ss_pred eEEEEcCCcCCCCcCccCcCh
Q 019900 305 VAVVELPHRVPYGFHAFFVSE 325 (334)
Q Consensus 305 vAr~~Lp~~iP~gfHG~w~~~ 325 (334)
|||++||++||+||||+|+++
T Consensus 470 vArv~lP~rvP~GfHG~wv~~ 490 (490)
T 2biw_A 470 IATLKLKHHIPYPLHGSWAQT 490 (490)
T ss_dssp SEEEECSSCCCCCCCEEEEEC
T ss_pred eEEEeCCCcCCCCccccccCC
Confidence 999999999999999999863
No 2
>3npe_A 9-CIS-epoxycarotenoid dioxygenase 1, chloroplasti; seven blade beta propeller, abscisic acid, non iron, oxidoreductase; 3.20A {Zea mays}
Probab=100.00 E-value=5.4e-83 Score=640.75 Aligned_cols=311 Identities=38% Similarity=0.693 Sum_probs=276.9
Q ss_pred CCCCCCCCCCCCCCCCeecCCCCcEEEEEeecC-CCcEEEEEEcCCCCeEeeEEEEcCCCccccccccCCCEEEEEeCCe
Q 019900 1 MLDYDKRLQHSFTAHPKVDPYTGEMFTFGYAHT-PPYITYRVISKDGFMHDPVPITVSDPIMMHDFAITENYAIFMDLPL 79 (334)
Q Consensus 1 ~~d~~g~l~~~~tAHPk~Dp~tG~l~~fg~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~iHdfa~Teny~V~~~~P~ 79 (334)
++||+|.|..+||||||+||+||||++|+|+.. .++++|++++++|++.+.+++++|.|+|||||||||||+||+++|+
T Consensus 209 ~~d~~g~l~~~~tAHPk~Dp~TGel~~f~y~~~~~p~~~~~~~~~~G~~~~~~~i~~~~p~~~HDFaiTenyvVf~~~Pl 288 (529)
T 3npe_A 209 RYDFDGQLGCAMIAHPKLDPATGELHALSYDVIKRPYLKYFYFRPDGTKSDDVEIPLEQPTMIHDFAITENLVVVPDHQV 288 (529)
T ss_dssp ECCGGGCCCSCCCSCCEECTTTCCEEEEECCSSSSCCCEEEEECTTCCBCCCEECCCSSCBCCCCCEECSSEEEEEECSE
T ss_pred eeccCCccCCcccccCcCCCCCCcEEEEEeecCCCCcEEEEEECCCCCEEEEEEEeCCCCceEeeEEecCCeEEEEeCCe
Confidence 368999999999999999999999999999975 5889999999999999888899999999999999999999999999
Q ss_pred ecCHHHHhhcCceeeEEcCCCCcEEEEEeCCCCCCCceEEEEcCCeeEEcccceeecC--CeEEEEEEecCCCCcccccc
Q 019900 80 YFRPKEMVKENKLIFTFDDTKKARFGILPRYAKNEAQMKWFELPNCFIFHNANAWEEE--DEVVLITCRLDKPDLDMVNG 157 (334)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~tr~~vipR~~~~~~~v~~~~~~~~f~fH~~NAyE~~--~~ivvd~~~~~~~~~~~~~~ 157 (334)
++|+.+|++| +.++.|+|++++||+||||++++.+.++||++|+||+||++||||++ |+||+|.|++.+.+..+.
T Consensus 289 ~~~~~~~~~g-~~~~~~~p~~~tr~~VipR~~~~~~~vrw~e~~~~f~fH~~NA~Ee~~~~~ivv~~~~~~~~~~~~~-- 365 (529)
T 3npe_A 289 VFKLQEMLRG-GSPVVLDAAKTSRFGVLPKHAADASEMAWVDVPDCFCFHLWNAWEDEATGEVVVIGSCMTPADSIFN-- 365 (529)
T ss_dssp EECGGGGTTT-CCSEEECTTSCCEEEEEETTCSSGGGCEEEECTTCEEEEEEEEEEETTTTEEEEEEEEECCCCCSCC--
T ss_pred EEcHHHHhCC-CCceEECCCCCcEEEEEECCCCCCCceEEEEcCCEEEEEecccEecCCCCeEEEEEecccCchhhhh--
Confidence 9999999875 47999999999999999999766568999999999999999999974 689998888754332110
Q ss_pred hhhhccccCcceEEEEEEeCCCCceeEEecc----CCCccCcccCCCCCCCCcceEEEeccCCCCCcCeEEEEEcCCCCc
Q 019900 158 AVKEKLENFSNELYEMRFNLKTGLASQKRLS----ASAVDFPRVNECYTGRKQRYVYGTILDSIAKVTGIIKFDLHAEPD 233 (334)
Q Consensus 158 ~~~~~~~~~~~~l~R~~idl~~g~~~~~~l~----~~~~EfP~in~~~~G~~yry~y~~~~~~~~~~~~l~k~D~~t~~~ 233 (334)
.......++|+||+||+.+|+++++.|. +.++|||+||+++.||+|||+|+++.++...+++|+|+|++||+.
T Consensus 366 ---~~~~~~~~~l~r~rl~l~~g~~~~~~l~~~~~~~~~EfP~In~~~~Gr~~Ry~Y~~~~~~~~~~~~l~K~D~~tg~~ 442 (529)
T 3npe_A 366 ---ESDERLESVLTEIRLDARTGRSTRRAVLPPSQQVNLEVGMVNRNLLGRETRYAYLAVAEPWPKVSGFAKVDLSTGEL 442 (529)
T ss_dssp ---SSSSCCCCEEEEEEECTTTCCEEEEESSCSSSCCCEEEEEECGGGTTSCCSEEEEEECCSTTSCCEEEEEETTTCCE
T ss_pred ---ccchhhccceEEEEEcCCCCCEEeEEecccccCccccCceEChhHcCCccceEEEeccCCCCCcceEEEEecCCCce
Confidence 0123456899999999999999888887 489999999999999999999999987666789999999999873
Q ss_pred cccceeccCCceeeEEEcCCCCcccceEEeeCCCC--CCCCCCCeEEEEEEEeCCCCCcEEEEEeCCCCCCCceEEEEcC
Q 019900 234 EEKTKLEVGGNVRGIFDLGPGRFGSEAVFVPREPG--TSSEEDVGYLIFFSHDEKTGKSSVNVIDAKTMSADPVAVVELP 311 (334)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~EPvFVPr~~~--~~~~EDDG~lL~~v~d~~~~~s~L~VlDA~~l~~gpvAr~~Lp 311 (334)
+.||+++++++||||||||+++ .+++|||||||++|+|..+++|+|+||||++|++ |||++||
T Consensus 443 -------------~~~~~g~~~~~~EPvFVPrp~~~~~~~~EDDG~lLs~V~d~~~~~S~LlILDA~~l~~--vArv~LP 507 (529)
T 3npe_A 443 -------------TKFEYGEGRFGGEPCFVPMDPAAAHPRGEDDGYVLTFVHDERAGTSELLVVNAADMRL--EATVQLP 507 (529)
T ss_dssp -------------EEEECCTTBCCCCCEEEECCSCSSSSCCTTCEEEEEEEEBSSCCCEEEEEEETTTTEE--EEEEEES
T ss_pred -------------EEEEcCCCccccCCEeeeCCCCCCCCCCCCCcEEEEEEEECCCCcEEEEEEeCCCCcc--ceEEECC
Confidence 4699999999999999999641 0358999999999999999999999999999985 8999999
Q ss_pred CcCCCCcCccCcChhhHHHhh
Q 019900 312 HRVPYGFHAFFVSEEQLEEQA 332 (334)
Q Consensus 312 ~~iP~gfHG~w~~~~~~~~~~ 332 (334)
++||+||||+|+++++|..|+
T Consensus 508 ~rvP~GfHG~wv~~~~l~~q~ 528 (529)
T 3npe_A 508 SRVPFGFHGTFITGQELEAQA 528 (529)
T ss_dssp SCCCCCSCEEEEEHHHHTTCC
T ss_pred CCCCCCccccccCHHHhhhhh
Confidence 999999999999999999875
No 3
>3kvc_A Retinoid isomerohydrolase; 7-bladed beta-propeller, monotopic membrane protein, sensory transduction, vision, isomerase, non-heme iron protein; 1.90A {Bos taurus} PDB: 3fsn_A 4f2z_A 4f30_A 4f3a_A 4f3d_A
Probab=100.00 E-value=4.4e-76 Score=592.61 Aligned_cols=303 Identities=19% Similarity=0.318 Sum_probs=238.8
Q ss_pred CCCCCCCC-CCCCCCCeecCCCCcEEEEEeecCCC-c--EEEEEEcCC-----CCeEe-eEEEE-----cCCCccccccc
Q 019900 2 LDYDKRLQ-HSFTAHPKVDPYTGEMFTFGYAHTPP-Y--ITYRVISKD-----GFMHD-PVPIT-----VSDPIMMHDFA 66 (334)
Q Consensus 2 ~d~~g~l~-~~~tAHPk~Dp~tG~l~~fg~~~~~~-~--~~~~~~~~~-----g~~~~-~~~~~-----~~~~~~iHdfa 66 (334)
+||+|.|. .+||||||+|| ||||||||++.+++ . +.++.++++ +.+.+ .+.++ ++.|+||||||
T Consensus 166 ~d~~g~l~~~~~tAHPk~Dp-tGel~~fg~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~p~~iHDFa 244 (533)
T 3kvc_A 166 VDLCNYVSVNGATAHPHIEN-DGTVYNIGNCFGKNFSIAYNIVKIPPLQADKEDPISKSEIVVQFPCSDRFKPSYVHSFG 244 (533)
T ss_dssp EEHHHHSSCSCCCSCCEECT-TSCEEEEEEECC---CCEEEEEEECCCCTTCCCGGGGCEEEEEEECSSTTCCBCCCCCE
T ss_pred cccCCccCCCccCCCCccCC-CCCEEEEeeccCCCCCcEEEEEEECccccccccccccceeEEeeccccCCCCceeeeee
Confidence 57888887 58999999999 99999999998753 3 444444543 22222 22223 45899999999
Q ss_pred cCCCEEEEEeCCeecCHHHHhhc----Cce---eeEEcCCCCcEEEEEeCCCCCCCceEEEEcCCeeEEcccceeecCCe
Q 019900 67 ITENYAIFMDLPLYFRPKEMVKE----NKL---IFTFDDTKKARFGILPRYAKNEAQMKWFELPNCFIFHNANAWEEEDE 139 (334)
Q Consensus 67 ~Teny~V~~~~P~~~~~~~~~~~----~~~---~~~~~~~~~tr~~vipR~~~~~~~v~~~~~~~~f~fH~~NAyE~~~~ 139 (334)
|||||+||+++|+++|+.+|+++ ++. ++.|+|++++||+||||++++ ..++|+++++||+||++||||++|+
T Consensus 245 iTeny~Vf~~~P~~~~~~~~~~g~~~~~~~~~~~~~~~p~~~tr~~VipR~~~~-~~~~~~~~~~~f~fH~~NA~Ee~~~ 323 (533)
T 3kvc_A 245 LTPNYIVFVETPVKINLFKFLSSWSLWGANYMDCFESNETMGVWLHIADKKRKK-YINNKYRTSPFNLFHHINTYEDHEF 323 (533)
T ss_dssp ECSSEEEEEECSEEEC-----------CCCSGGGEEECSSCCEEEEEEETTTTE-EEEEEEEECCEEEEEEEEEEEETTE
T ss_pred ecCCEEEEEeCCeEEcHHHHhhcccccCCChHHheeecCCCCcEEEEEECCCCC-cccEEEEeCCeeEEeeeeeEEeCCE
Confidence 99999999999999999999876 333 799999999999999999743 2357899999999999999999999
Q ss_pred EEEEEEecCC-CCcc--cccchhhhc--------cccCcceEEEEEEeCCCC------------------------c--e
Q 019900 140 VVLITCRLDK-PDLD--MVNGAVKEK--------LENFSNELYEMRFNLKTG------------------------L--A 182 (334)
Q Consensus 140 ivvd~~~~~~-~~~~--~~~~~~~~~--------~~~~~~~l~R~~idl~~g------------------------~--~ 182 (334)
||+|+|+|++ ..+. ++..+++.. .....++|+||+|||.++ + +
T Consensus 324 Iv~d~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~R~~l~l~~~~~~~~~nl~~~~~~~~~a~~~~~~~~~~ 403 (533)
T 3kvc_A 324 LIVDLCCWKGFEFVYNYLYLANLRENWEEVKKNARKAPQPEVRRYVLPLNIDKADTGKNLVTLPNTTATAILCSDETIWL 403 (533)
T ss_dssp EEEEEEEEESSSCGGGGCBHHHHTSCHHHHHHHHTTSCEEEEEEEEEESCCCGGGTTSBCCCCTTCCCEEEECTTSEEEE
T ss_pred EEEEEeeeCCchhhhhhhhhhhhcccchhccccccccCCceEEEEEEeCCcccccccccccccccccceeeeccCCceee
Confidence 9999999988 4431 112222211 113568999999999874 1 3
Q ss_pred eEEeccC--C-CccCcccCC-CCCCCCcceEEEeccCCCCCcCeEEEEEcCCCCccccceeccCCceeeEEEcCCCCccc
Q 019900 183 SQKRLSA--S-AVDFPRVNE-CYTGRKQRYVYGTILDSIAKVTGIIKFDLHAEPDEEKTKLEVGGNVRGIFDLGPGRFGS 258 (334)
Q Consensus 183 ~~~~l~~--~-~~EfP~in~-~~~G~~yry~y~~~~~~~~~~~~l~k~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (334)
+.+.|++ . ++|||+||+ ++.||+|||+|+++.+. ..+++|+|+|++||+. ..|.++++++|
T Consensus 404 ~~~~l~~~~~~~~EfP~In~~~~~Gr~~Ry~Y~~~~~~-~~~~~l~K~D~~tg~~--------------~~w~~~~~~~~ 468 (533)
T 3kvc_A 404 EPEVLFSGPRQAFEFPQINYQKYGGKPYTYAYGLGLNH-FVPDRLCKLNVKTKET--------------WVWQEPDSYPS 468 (533)
T ss_dssp ECEEEECBTTEEEEEEECCHHHHTTSCCCEEEEEEEET-TEEEEEEEEETTTCCE--------------EEECCTTCBCC
T ss_pred eeeeeccCCcccccCceECHHHhCCCcccEEEEeccCC-CCCceeEEEEcCCCCE--------------EEEeCCCcccc
Confidence 3566774 6 899999999 79999999999998653 5689999999999763 25678999999
Q ss_pred ceEEeeCCCCCCCCCCCeEEEEEEEeCCC--CCcEEEEEeCCCCCCCceEEEEcCCcCCCCcCccCcCh
Q 019900 259 EAVFVPREPGTSSEEDVGYLIFFSHDEKT--GKSSVNVIDAKTMSADPVAVVELPHRVPYGFHAFFVSE 325 (334)
Q Consensus 259 EPvFVPr~~~~~~~EDDG~lL~~v~d~~~--~~s~L~VlDA~~l~~gpvAr~~Lp~~iP~gfHG~w~~~ 325 (334)
|||||||+ + +++|||||||++|+|..+ ++|+|+||||++|++ |||++||++||+||||+|+++
T Consensus 469 EPiFVPrp-~-~~~EDDG~lLs~V~d~~~~~~~s~LlILDA~~l~~--vArv~lP~rvP~GfHG~w~~~ 533 (533)
T 3kvc_A 469 EPIFVSHP-D-ALEEDDGVVLSVVVSPGAGQKPAYLLILNAKDLSE--VARAEVEINIPVTFHGLFKKS 533 (533)
T ss_dssp CCEEEECT-T-CCSTTCEEEEEEEECCSTTSCSEEEEEEETTTCCE--EEEEEESSCCCCCCEEEEEEC
T ss_pred CceeecCC-C-CCCCCCcEEEEEEEeCCcCCCccEEEEEeCCCChh--hEEEEeCCCCCCCccccccCC
Confidence 99999996 4 568999999999999986 567999999999985 999999999999999999864
No 4
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=38.02 E-value=2.9e+02 Score=26.87 Aligned_cols=105 Identities=16% Similarity=0.078 Sum_probs=58.8
Q ss_pred EEEEeCCCCceeEEeccCCCccCcccCCCCCCCCcceEEEeccCCCCCcCeEEEEEcC--CCCccccceeccCCceeeEE
Q 019900 172 EMRFNLKTGLASQKRLSASAVDFPRVNECYTGRKQRYVYGTILDSIAKVTGIIKFDLH--AEPDEEKTKLEVGGNVRGIF 249 (334)
Q Consensus 172 R~~idl~~g~~~~~~l~~~~~EfP~in~~~~G~~yry~y~~~~~~~~~~~~l~k~D~~--t~~~~~~~~~~~~~~~~~~~ 249 (334)
-.+||+.++++..+.-.........+++ .-||+|.++. -+.|..+|+. +++.. .
T Consensus 179 V~viD~~t~~v~~~i~~g~~p~~v~~Sp-----DGr~lyv~~~-----dg~V~viD~~~~t~~~v--------------~ 234 (567)
T 1qks_A 179 IALIDGSTYEIKTVLDTGYAVHISRLSA-----SGRYLFVIGR-----DGKVNMIDLWMKEPTTV--------------A 234 (567)
T ss_dssp EEEEETTTCCEEEEEECSSCEEEEEECT-----TSCEEEEEET-----TSEEEEEETTSSSCCEE--------------E
T ss_pred EEEEECCCCeEEEEEeCCCCccceEECC-----CCCEEEEEcC-----CCeEEEEECCCCCCcEe--------------E
Confidence 4567888877665433332223344443 4468887652 2589999996 54321 1
Q ss_pred EcCCCCcccceEEeeCCCCCCCCCCCeEEEEEEEeCCCCCcEEEEEeCCCCCCCceEEEEcC
Q 019900 250 DLGPGRFGSEAVFVPREPGTSSEEDVGYLIFFSHDEKTGKSSVNVIDAKTMSADPVAVVELP 311 (334)
Q Consensus 250 ~~~~~~~~~EPvFVPr~~~~~~~EDDG~lL~~v~d~~~~~s~L~VlDA~~l~~gpvAr~~Lp 311 (334)
....| .+|.-+.=.+ -..-|.-||++.-+. ...+.|+|+.+++ ++.++.+.
T Consensus 235 ~i~~G---~~P~~ia~s~--~~~pDGk~l~v~n~~----~~~v~ViD~~t~~--~~~~i~~~ 285 (567)
T 1qks_A 235 EIKIG---SEARSIETSK--MEGWEDKYAIAGAYW----PPQYVIMDGETLE--PKKIQSTR 285 (567)
T ss_dssp EEECC---SEEEEEEECC--STTCTTTEEEEEEEE----TTEEEEEETTTCC--EEEEEECC
T ss_pred EEecC---CCCceeEEcc--ccCCCCCEEEEEEcc----CCeEEEEECCCCc--EEEEEecc
Confidence 12222 3454443320 000134477776654 3578899999987 58888764
No 5
>4guc_A Protein BA_2500; virulence, pathogenesis, vaccine candidate, center for struc genomics of infectious diseases, csgid, niaid; HET: PGE; 1.40A {Bacillus anthracis}
Probab=32.36 E-value=1.8e+02 Score=22.61 Aligned_cols=49 Identities=16% Similarity=0.204 Sum_probs=35.5
Q ss_pred CCCCcEEEEEeecCC---CcEEEEEEc----CCCCeEeeEEEEcCCCccccccccCCCEEEEEe
Q 019900 20 PYTGEMFTFGYAHTP---PYITYRVIS----KDGFMHDPVPITVSDPIMMHDFAITENYAIFMD 76 (334)
Q Consensus 20 p~tG~l~~fg~~~~~---~~~~~~~~~----~~g~~~~~~~~~~~~~~~iHdfa~Teny~V~~~ 76 (334)
-.||..+++....+. ..+..|.+. ++|.+.|-.. |||+..+.||.+|--
T Consensus 34 lktGdtf~it~~~~~~d~g~~KIyrv~~~~~~~g~L~RYkT--------I~d~~~~~~~~~f~T 89 (120)
T 4guc_A 34 LKHGDTFDVTIYTGGKDTGIVKIYQLSGNENDEINLHRYKT--------IYDSGLKHNYGRFVT 89 (120)
T ss_dssp EETTCEEEEEEECCSSBCCEEEEEEECSCTTCSCCEEEEEE--------EECCCCCTTEEEEEE
T ss_pred cccCCEEEEEEEcCCCccceEEEEEEccCCCCCcceEEEEE--------eccCCCcCCeeEEEe
Confidence 358999888886543 247788884 5788887653 488889999887643
No 6
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=19.90 E-value=4e+02 Score=22.98 Aligned_cols=34 Identities=18% Similarity=0.460 Sum_probs=23.0
Q ss_pred CCeEEEEEEEeCC-----CCCcEEEEEeCCCCCCCceEEEEcC
Q 019900 274 DVGYLIFFSHDEK-----TGKSSVNVIDAKTMSADPVAVVELP 311 (334)
Q Consensus 274 DDG~lL~~v~d~~-----~~~s~L~VlDA~~l~~gpvAr~~Lp 311 (334)
.+||=|+ .|.. .+.+.|.++|+++++. +.++.+-
T Consensus 105 ~~Gwglt--~dg~~L~vSdgs~~l~~iDp~t~~~--~~~I~V~ 143 (243)
T 3mbr_X 105 GEGWALT--SDDSHLYMSDGTAVIRKLDPDTLQQ--VGSIKVT 143 (243)
T ss_dssp SCCCEEE--ECSSCEEEECSSSEEEEECTTTCCE--EEEEECE
T ss_pred CCceEEe--eCCCEEEEECCCCeEEEEeCCCCeE--EEEEEEc
Confidence 4566555 3332 2456889999999885 8888876
No 7
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=18.28 E-value=3e+02 Score=24.20 Aligned_cols=22 Identities=9% Similarity=0.360 Sum_probs=16.5
Q ss_pred CcEEEEEeCCCCCCCceEEEEcCC
Q 019900 289 KSSVNVIDAKTMSADPVAVVELPH 312 (334)
Q Consensus 289 ~s~L~VlDA~~l~~gpvAr~~Lp~ 312 (334)
.+.|.++|+++++. ++++.+..
T Consensus 145 s~~i~~iDp~T~~v--~~~I~V~~ 166 (262)
T 3nol_A 145 TPVLRFLDPESLTP--VRTITVTA 166 (262)
T ss_dssp SSEEEEECTTTCSE--EEEEECEE
T ss_pred CCeEEEEcCCCCeE--EEEEEecc
Confidence 56788888888875 78877763
No 8
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=17.57 E-value=2.3e+02 Score=26.68 Aligned_cols=79 Identities=24% Similarity=0.166 Sum_probs=44.6
Q ss_pred ceEEEeccCCCCCcCeEEEEEcCCCCccccceeccCCceeeEEEcCCCCcccceEEeeCCCCCCCCCCCeEEEEEEEeCC
Q 019900 207 RYVYGTILDSIAKVTGIIKFDLHAEPDEEKTKLEVGGNVRGIFDLGPGRFGSEAVFVPREPGTSSEEDVGYLIFFSHDEK 286 (334)
Q Consensus 207 ry~y~~~~~~~~~~~~l~k~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~EPvFVPr~~~~~~~EDDG~lL~~v~d~~ 286 (334)
+++|-+.......-+.|..+|+.|++.++ .... |..+ .-.|=| |..+|.+.-....
T Consensus 85 ~~vyV~n~~~~~~~~~VsVID~~t~~vv~------------~I~v--G~~P-gia~Sp---------Dgk~lyVan~~~~ 140 (426)
T 3c75_H 85 RRVYIQDPAHFAAITQQFVIDGSTGRILG------------MTDG--GFLP-HPVAAE---------DGSFFAQASTVFE 140 (426)
T ss_dssp TEEEEEECTTTCSSEEEEEEETTTTEEEE------------EEEE--CSSC-EEEECT---------TSSCEEEEEEEEE
T ss_pred CEEEEECCCcCCCCCeEEEEECCCCEEEE------------EEEC--CCCC-ceEECC---------CCCEEEEEecccc
Confidence 56787764311111799999999876422 1222 3333 222222 2224444432111
Q ss_pred -----CCCcEEEEEeCCCCCCCceEEEEcC
Q 019900 287 -----TGKSSVNVIDAKTMSADPVAVVELP 311 (334)
Q Consensus 287 -----~~~s~L~VlDA~~l~~gpvAr~~Lp 311 (334)
.....+.|+|+++++. ++++.+|
T Consensus 141 ~~~~G~~~~~VsviD~~t~~v--v~~I~v~ 168 (426)
T 3c75_H 141 RIARGKRTDYVEVFDPVTFLP--IADIELP 168 (426)
T ss_dssp ETTEEEEEEEEEEECTTTCCE--EEEEEET
T ss_pred ccccCCCCCEEEEEECCCCcE--EEEEECC
Confidence 1234899999999984 9999997
No 9
>2xpn_B SPT6, chromatin structure modulator; transcription, elongation, histone chaperone, RNA polymerase mRNA export; 1.95A {Encephalitozoon cuniculi} PDB: 2xpo_B
Probab=15.40 E-value=52 Score=18.08 Aligned_cols=11 Identities=45% Similarity=0.776 Sum_probs=8.1
Q ss_pred CCCCcceEEEe
Q 019900 202 TGRKQRYVYGT 212 (334)
Q Consensus 202 ~G~~yry~y~~ 212 (334)
.|.+|||+|-.
T Consensus 11 tG~EYrYile~ 21 (26)
T 2xpn_B 11 TGEEYRYVLES 21 (26)
T ss_pred CCceEEEEeec
Confidence 47788988753
No 10
>3taw_A Hypothetical glycoside hydrolase; 5-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.70A {Parabacteroides distasonis} PDB: 3r67_A*
Probab=14.32 E-value=2.4e+02 Score=25.70 Aligned_cols=51 Identities=8% Similarity=0.201 Sum_probs=37.0
Q ss_pred CCeEEEEEEEeCCC----------C--CcEEEEEeCCCCCCCceEEEEcCCcCCCCc---CccCcCh
Q 019900 274 DVGYLIFFSHDEKT----------G--KSSVNVIDAKTMSADPVAVVELPHRVPYGF---HAFFVSE 325 (334)
Q Consensus 274 DDG~lL~~v~d~~~----------~--~s~L~VlDA~~l~~gpvAr~~Lp~~iP~gf---HG~w~~~ 325 (334)
++||||..--...+ . +-..++||..+.++ .|+|..-|.-.|..- +|.|++.
T Consensus 255 ~~Gwll~YhGv~~~~~~~~~~~~~~~Y~~g~~lld~~dp~k-vi~r~~~p~l~P~~~~E~~G~yv~n 320 (356)
T 3taw_A 255 KDGIVLLYNGKNEPGEKGDTAYPANSYCAGQALFDVNNPTK-LIGRLDKPFLQPTDDFEKSGQYPAG 320 (356)
T ss_dssp TTEEEEEEEEECCSGGGSCTTSCTTCEEEEEEEECSSSTTC-EEEECSSCSBCCCSHHHHSSSSTTC
T ss_pred CCcEEEEEeccccccccccccccCceEEEEEEEEcCCCCCE-eeecCCCCeEcCCCCcccCCcccCC
Confidence 67998865433322 1 13789999999986 799988898888875 7876653
Done!