Query 019900
Match_columns 334
No_of_seqs 143 out of 1026
Neff 7.6
Searched_HMMs 13730
Date Mon Mar 25 08:46:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019900.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/019900hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1zaka2 g.41.2.1 (A:128-158) M 55.0 2.6 0.00019 23.5 1.4 16 17-32 3-18 (31)
2 d1qksa2 b.70.2.1 (A:136-567) C 28.7 22 0.0016 30.9 4.3 33 277-311 381-413 (432)
3 d2ap1a2 c.55.1.10 (A:1-117) Pu 27.6 51 0.0037 22.6 5.5 32 25-57 1-32 (117)
4 d1m7ja2 b.92.1.6 (A:420-480) N 25.3 5.5 0.0004 25.5 -0.5 36 289-326 7-42 (61)
5 d1hzua2 b.70.2.1 (A:118-543) C 21.9 33 0.0024 29.2 4.0 33 277-311 375-407 (426)
6 d2aa4a1 c.55.1.10 (A:1-119) N- 16.6 83 0.006 21.6 4.6 32 26-57 2-33 (119)
7 d1z6ra2 c.55.1.10 (A:82-210) M 14.8 1.2E+02 0.0089 20.7 5.2 34 24-57 3-36 (129)
8 d2hoea3 c.55.1.10 (A:72-199) N 13.1 1.7E+02 0.012 19.8 5.7 32 26-57 5-36 (128)
9 d2ghsa1 b.68.6.1 (A:20-314) Re 10.9 1.2E+02 0.0087 24.3 4.6 38 18-60 206-243 (295)
10 d1pina1 b.72.1.1 (A:6-39) Mito 10.2 80 0.0058 17.1 2.1 15 17-31 9-23 (34)
No 1
>d1zaka2 g.41.2.1 (A:128-158) Microbial and mitochondrial ADK, insert "zinc finger" domain {Maize (Zea mays) [TaxId: 4577]}
Probab=55.05 E-value=2.6 Score=23.53 Aligned_cols=16 Identities=31% Similarity=0.874 Sum_probs=12.6
Q ss_pred eecCCCCcEEEEEeec
Q 019900 17 KVDPYTGEMFTFGYAH 32 (334)
Q Consensus 17 k~Dp~tG~l~~fg~~~ 32 (334)
++||.||++|-.-+..
T Consensus 3 R~DP~TG~iYH~~f~p 18 (31)
T d1zaka2 3 RLDPVTGKIYHLKYSP 18 (31)
T ss_dssp EECTTTCCEEESSSSC
T ss_pred cCCCCCCcEeEEecCC
Confidence 5799999998766653
No 2
>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}
Probab=28.74 E-value=22 Score=30.93 Aligned_cols=33 Identities=24% Similarity=0.269 Sum_probs=25.7
Q ss_pred EEEEEEEeCCCCCcEEEEEeCCCCCCCceEEEEcC
Q 019900 277 YLIFFSHDEKTGKSSVNVIDAKTMSADPVAVVELP 311 (334)
Q Consensus 277 ~lL~~v~d~~~~~s~L~VlDA~~l~~gpvAr~~Lp 311 (334)
+|++.++...+..+.++|+|+++++. ++++.-|
T Consensus 381 ~v~~S~~~~~~~~g~i~i~D~~T~k~--~~~i~~~ 413 (432)
T d1qksa2 381 EVWFSVWNGKDQESALVVVDDKTLEL--KHVIKDE 413 (432)
T ss_dssp EEEEEEECCTTSCCEEEEEETTTTEE--EEEECCT
T ss_pred EEEEEEecCCCCCCcEEEEECCCceE--EeEecCC
Confidence 56666766666778999999999986 6777665
No 3
>d2ap1a2 c.55.1.10 (A:1-117) Putative regulator protein YcfX {Salmonella typhimurium [TaxId: 90371]}
Probab=27.61 E-value=51 Score=22.57 Aligned_cols=32 Identities=13% Similarity=0.238 Sum_probs=25.8
Q ss_pred EEEEEeecCCCcEEEEEEcCCCCeEeeEEEEcC
Q 019900 25 MFTFGYAHTPPYITYRVISKDGFMHDPVPITVS 57 (334)
Q Consensus 25 l~~fg~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 57 (334)
|| +|+..++.++.+-.+|.+|+++.+..++.|
T Consensus 1 My-iGiDiGgT~i~~~l~d~~g~i~~~~~~~t~ 32 (117)
T d2ap1a2 1 MY-YGFDIGGTKIALGVFDSTRRLQWEKRVPTP 32 (117)
T ss_dssp EE-EEEEECSSEEEEEEEETTCCEEEEEEEECC
T ss_pred CE-EEEEECcceEEEEEEeCCCCEEEEEEEeec
Confidence 44 888888889999999999999876665544
No 4
>d1m7ja2 b.92.1.6 (A:420-480) N-acyl-D-aminoacid amidohydrolase {Alcaligenes faecalis [TaxId: 511]}
Probab=25.33 E-value=5.5 Score=25.53 Aligned_cols=36 Identities=25% Similarity=0.403 Sum_probs=29.6
Q ss_pred CcEEEEEeCCCCCCCceEEEEcCCcCCCCcCccCcChh
Q 019900 289 KSSVNVIDAKTMSADPVAVVELPHRVPYGFHAFFVSEE 326 (334)
Q Consensus 289 ~s~L~VlDA~~l~~gpvAr~~Lp~~iP~gfHG~w~~~~ 326 (334)
..+|+|||..++.+ -|...-|...+.|++..|+...
T Consensus 7 ~ADlvvfDp~~i~d--~~~~~~~~~~~~Gi~~v~VnG~ 42 (61)
T d1m7ja2 7 YADLVVFDPATVAD--SATFEHPTERAAGIHSVYVNGA 42 (61)
T ss_dssp BCCEEEECTTTCBC--CCCSSSTTCCCBSEEEEEETTE
T ss_pred CCCEEEECHHHccC--cccccccccccceeEEEEECCE
Confidence 36899999999876 4777888888999998888765
No 5
>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}
Probab=21.87 E-value=33 Score=29.22 Aligned_cols=33 Identities=33% Similarity=0.390 Sum_probs=25.7
Q ss_pred EEEEEEEeCCCCCcEEEEEeCCCCCCCceEEEEcC
Q 019900 277 YLIFFSHDEKTGKSSVNVIDAKTMSADPVAVVELP 311 (334)
Q Consensus 277 ~lL~~v~d~~~~~s~L~VlDA~~l~~gpvAr~~Lp 311 (334)
+|++.++......+.+.|+|+++++. ++++.-+
T Consensus 375 ~i~vs~~~~~~~~~~i~v~D~~T~k~--~~~i~~~ 407 (426)
T d1hzua2 375 EVWFSVWNGKNDSSALVVVDDKTLKL--KAVVKDP 407 (426)
T ss_dssp EEEEEECCCTTSCCEEEEEETTTTEE--EEEECCT
T ss_pred EEEEEEecCCCCCCeEEEEECCCCeE--EEEECCC
Confidence 67777777767778899999999985 6776544
No 6
>d2aa4a1 c.55.1.10 (A:1-119) N-acetylmannosamine kinase NanK {Escherichia coli [TaxId: 562]}
Probab=16.63 E-value=83 Score=21.55 Aligned_cols=32 Identities=16% Similarity=0.186 Sum_probs=25.5
Q ss_pred EEEEeecCCCcEEEEEEcCCCCeEeeEEEEcC
Q 019900 26 FTFGYAHTPPYITYRVISKDGFMHDPVPITVS 57 (334)
Q Consensus 26 ~~fg~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 57 (334)
...|+..++.++.+..+|.+|+++.+..++.+
T Consensus 2 ~~lgiDiGgT~i~~~l~d~~G~i~~~~~~~~~ 33 (119)
T d2aa4a1 2 TTLAIDIGGTKLAAALIGADGQIRDRRELPTP 33 (119)
T ss_dssp CEEEEEECSSEEEEEEECTTCCEEEEEEEECC
T ss_pred eEEEEEeCcCEEEEEEEcCCCCEEEeEEEecc
Confidence 35678888889999999999999876665544
No 7
>d1z6ra2 c.55.1.10 (A:82-210) Mlc protein {Escherichia coli [TaxId: 562]}
Probab=14.78 E-value=1.2e+02 Score=20.72 Aligned_cols=34 Identities=3% Similarity=-0.131 Sum_probs=27.4
Q ss_pred cEEEEEeecCCCcEEEEEEcCCCCeEeeEEEEcC
Q 019900 24 EMFTFGYAHTPPYITYRVISKDGFMHDPVPITVS 57 (334)
Q Consensus 24 ~l~~fg~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 57 (334)
..+..|++.+...+.+..+|.+|+++.+..++++
T Consensus 3 ~~~~l~i~i~~~~i~~~l~Dl~G~~l~~~~~~~~ 36 (129)
T d1z6ra2 3 AWHYLSLRISRGEIFLALRDLSSKLVVEESQELA 36 (129)
T ss_dssp TCEEEEEEEETTEEEEEEEETTCCEEEEEEEECC
T ss_pred ceEEEEEEECCCEEEEEEEcCCCCEEEEEEeecc
Confidence 3456788887888999999999999977666665
No 8
>d2hoea3 c.55.1.10 (A:72-199) N-acetylglucosamine kinase {Thermotoga maritima [TaxId: 2336]}
Probab=13.11 E-value=1.7e+02 Score=19.81 Aligned_cols=32 Identities=13% Similarity=0.074 Sum_probs=26.5
Q ss_pred EEEEeecCCCcEEEEEEcCCCCeEeeEEEEcC
Q 019900 26 FTFGYAHTPPYITYRVISKDGFMHDPVPITVS 57 (334)
Q Consensus 26 ~~fg~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 57 (334)
|.+|+..+...+.+..+|.+|+++.+..++++
T Consensus 5 ~~igidig~~~i~~~l~d~~G~il~~~~~~~~ 36 (128)
T d2hoea3 5 YVLGIEVTRDEIAACLIDASMNILAHEAHPLP 36 (128)
T ss_dssp EEEEEEECSSEEEEEEEETTCCEEEEEEEECC
T ss_pred EEEEEEECCCEEEEEEEcCCCCEEEEEEEecc
Confidence 56788888889999999999999877666654
No 9
>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}
Probab=10.92 E-value=1.2e+02 Score=24.34 Aligned_cols=38 Identities=11% Similarity=0.142 Sum_probs=22.3
Q ss_pred ecCCCCcEEEEEeecCCCcEEEEEEcCCCCeEeeEEEEcCCCc
Q 019900 18 VDPYTGEMFTFGYAHTPPYITYRVISKDGFMHDPVPITVSDPI 60 (334)
Q Consensus 18 ~Dp~tG~l~~fg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 60 (334)
+|.+ |.+|.=.+..+ .+.+++++|+++++..++.+.|+
T Consensus 206 vD~~-GnlWva~~~~g----~V~~~dp~G~~~~~i~lP~~~~T 243 (295)
T d2ghsa1 206 CDAE-GHIWNARWGEG----AVDRYDTDGNHIARYEVPGKQTT 243 (295)
T ss_dssp ECTT-SCEEEEEETTT----EEEEECTTCCEEEEEECSCSBEE
T ss_pred EcCC-CCEEeeeeCCC----ceEEecCCCcEeeEecCCCCceE
Confidence 4653 67664333221 47888999999866544333343
No 10
>d1pina1 b.72.1.1 (A:6-39) Mitotic rotamase PIN1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.21 E-value=80 Score=17.14 Aligned_cols=15 Identities=13% Similarity=0.439 Sum_probs=12.1
Q ss_pred eecCCCCcEEEEEee
Q 019900 17 KVDPYTGEMFTFGYA 31 (334)
Q Consensus 17 k~Dp~tG~l~~fg~~ 31 (334)
++|+.+|+.|.+...
T Consensus 9 ~~d~~~G~~YY~n~~ 23 (34)
T d1pina1 9 RMSRSSGRVYYFNHI 23 (34)
T ss_dssp EECTTSCCEEEEETT
T ss_pred EECCCCCCEEEEECC
Confidence 578888999888764
Done!