BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019902
(334 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1V32|A Chain A, Solution Structure Of The SwibMDM2 DOMAIN OF THE
Hypothetical Protein At5g08430 From Arabidopsis Thaliana
Length = 101
Score = 107 bits (268), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 50/88 (56%), Positives = 66/88 (75%)
Query: 33 SKKVKFDGWGSIPLIEFLQSLGKDTTQQISRYDVTDIINKYVNENKLVHSVKKKRVVSDE 92
K+ +F GWGS LIEFL SLGKDT++ ISRYDV+D I KY+++ L+ KK+VV D+
Sbjct: 7 GKRFEFVGWGSRQLIEFLHSLGKDTSEMISRYDVSDTIAKYISKEGLLDPSNKKKVVCDK 66
Query: 93 RLLSLFGKKSFLRIKIYDLLEAHYAENQ 120
RL+ LFG ++ R+K+YDLLE HY ENQ
Sbjct: 67 RLVLLFGTRTIFRMKVYDLLEKHYKENQ 94
>pdb|3MSV|A Chain A, The Hypoxic Regulator Of Sterol Synthesis Nro1 Is A
Nuclear Import Adaptor
pdb|3MSV|B Chain B, The Hypoxic Regulator Of Sterol Synthesis Nro1 Is A
Nuclear Import Adaptor
Length = 393
Score = 35.0 bits (79), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 54/127 (42%), Gaps = 3/127 (2%)
Query: 160 SCWAAIVPDNIKLVYLKRSLVQDLLKDSETFECKVVGSFVRVKSDPNDYLQKNSHQLLQV 219
+ W V D Y K + +L + TF + +S+ +D + K S L
Sbjct: 263 ALWLKSVVDPNTPAYYKLIAQEAVLNNYTTFAEYYMDLLDNSESNVDDLINKASSWLNNS 322
Query: 220 IGTKKVPGTDDKSTEILLKVSNFVKDIRIAT---LSDDNFSEEECEDLRQRVKDGLLKRP 276
+ T V T DKS E LLK+++ D+ S DN+ +E C +++ G+ P
Sbjct: 323 VDTWNVIYTLDKSPERLLKLADIKMDLAQIVQDEASQDNYLKEACNAIKEAQGSGVELSP 382
Query: 277 TVVELQE 283
VE E
Sbjct: 383 DYVEFVE 389
>pdb|3QTN|B Chain B, Crystal Structure Of Nro1ETT1 PROTEIN FROM S. POMBE (LOW
RESOLUTION)
Length = 346
Score = 35.0 bits (79), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 54/127 (42%), Gaps = 3/127 (2%)
Query: 160 SCWAAIVPDNIKLVYLKRSLVQDLLKDSETFECKVVGSFVRVKSDPNDYLQKNSHQLLQV 219
+ W V D Y K + +L + TF + +S+ +D + K S L
Sbjct: 216 ALWLKSVVDPNTPAYYKLIAQEAVLNNYTTFAEYYMDLLDNSESNVDDLINKASSWLNNS 275
Query: 220 IGTKKVPGTDDKSTEILLKVSNFVKDIRIAT---LSDDNFSEEECEDLRQRVKDGLLKRP 276
+ T V T DKS E LLK+++ D+ S DN+ +E C +++ G+ P
Sbjct: 276 VDTWNVIYTLDKSPERLLKLADIKMDLAQIVQDEASQDNYLKEACNAIKEAQGSGVELSP 335
Query: 277 TVVELQE 283
VE E
Sbjct: 336 DYVEFVE 342
>pdb|3QTM|A Chain A, Crystal Structure Of Nro1ETT1 PROTEIN FROM S. POMBE (HIGH
RESOLUTION)
pdb|3QTM|B Chain B, Crystal Structure Of Nro1ETT1 PROTEIN FROM S. POMBE (HIGH
RESOLUTION)
Length = 346
Score = 34.3 bits (77), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 53/127 (41%), Gaps = 3/127 (2%)
Query: 160 SCWAAIVPDNIKLVYLKRSLVQDLLKDSETFECKVVGSFVRVKSDPNDYLQKNSHQLLQV 219
+ W V D Y K + +L + TF +S+ +D + K S L
Sbjct: 216 ALWLKSVVDPNTPAYYKLIAQEAVLNNYTTFAEYYXDLLDNSESNVDDLINKASSWLNNS 275
Query: 220 IGTKKVPGTDDKSTEILLKVSNFVKDIRIAT---LSDDNFSEEECEDLRQRVKDGLLKRP 276
+ T V T DKS E LLK+++ D+ S DN+ +E C +++ G+ P
Sbjct: 276 VDTWNVIYTLDKSPERLLKLADIKXDLAQIVQDEASQDNYLKEACNAIKEAQGSGVELSP 335
Query: 277 TVVELQE 283
VE E
Sbjct: 336 DYVEFVE 342
>pdb|1ZVO|C Chain C, Semi-Extended Solution Structure Of Human Myeloma
Immunoglobulin D Determined By Constrained X-Ray
Scattering
pdb|1ZVO|D Chain D, Semi-Extended Solution Structure Of Human Myeloma
Immunoglobulin D Determined By Constrained X-Ray
Scattering
Length = 512
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/26 (61%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Query: 173 VYLKRSLVQDL-LKDSETFECKVVGS 197
VYL VQDL L+D TF C VVGS
Sbjct: 299 VYLLTPAVQDLWLRDKATFTCFVVGS 324
>pdb|3HXU|A Chain A, Crystal Structure Of Catalytic Fragment Of E. Coli Alars
In Complex With Alasa
pdb|3HXV|A Chain A, Crystal Structure Of Catalytic Fragment Of E. Coli Alars
In Complex With Glysa
pdb|3HXW|A Chain A, Crystal Structure Of Catalytic Fragment Of E. Coli Alars
In Complex With Sersa
pdb|3HXX|A Chain A, Crystal Structure Of Catalytic Fragment Of E. Coli Alars
In Complex With Amppcp
pdb|3HXY|A Chain A, Crystal Structure Of Catalytic Fragment Of E. Coli Alars
In Complex With Amppcp, Ala-Amp And Pcp
Length = 441
Score = 28.9 bits (63), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 34/67 (50%), Gaps = 6/67 (8%)
Query: 164 AIVPDNIKLVYLKRSLVQ------DLLKDSETFECKVVGSFVRVKSDPNDYLQKNSHQLL 217
++P N Y+ R +++ ++L ETF K+VG + V + L++ Q+
Sbjct: 297 GVMPSNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIDVMGSAGEDLKRQQAQVE 356
Query: 218 QVIGTKK 224
QV+ T++
Sbjct: 357 QVLKTEE 363
>pdb|3HXZ|A Chain A, Crystal Structure Of Catalytic Fragment Of E. Coli Alars
G237a In Complex With Alasa
pdb|3HXZ|B Chain B, Crystal Structure Of Catalytic Fragment Of E. Coli Alars
G237a In Complex With Alasa
pdb|3HXZ|C Chain C, Crystal Structure Of Catalytic Fragment Of E. Coli Alars
G237a In Complex With Alasa
pdb|3HXZ|D Chain D, Crystal Structure Of Catalytic Fragment Of E. Coli Alars
G237a In Complex With Alasa
pdb|3HY0|A Chain A, Crystal Structure Of Catalytic Fragment Of E. Coli Alars
G237a In Complex With Glysa
pdb|3HY0|B Chain B, Crystal Structure Of Catalytic Fragment Of E. Coli Alars
G237a In Complex With Glysa
pdb|3HY1|A Chain A, Crystal Structure Of Catalytic Fragment Of E. Coli Alars
G237a In Complex With Sersa
pdb|3HY1|B Chain B, Crystal Structure Of Catalytic Fragment Of E. Coli Alars
G237a In Complex With Sersa
Length = 441
Score = 28.9 bits (63), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 34/67 (50%), Gaps = 6/67 (8%)
Query: 164 AIVPDNIKLVYLKRSLVQ------DLLKDSETFECKVVGSFVRVKSDPNDYLQKNSHQLL 217
++P N Y+ R +++ ++L ETF K+VG + V + L++ Q+
Sbjct: 297 GVMPSNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIDVMGSAGEDLKRQQAQVE 356
Query: 218 QVIGTKK 224
QV+ T++
Sbjct: 357 QVLKTEE 363
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.133 0.377
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,845,755
Number of Sequences: 62578
Number of extensions: 343315
Number of successful extensions: 860
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 850
Number of HSP's gapped (non-prelim): 16
length of query: 334
length of database: 14,973,337
effective HSP length: 99
effective length of query: 235
effective length of database: 8,778,115
effective search space: 2062857025
effective search space used: 2062857025
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)