BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019902
(334 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9FT92|Y5843_ARATH Uncharacterized protein At5g08430 OS=Arabidopsis thaliana
GN=At5g08430 PE=1 SV=2
Length = 553
Score = 330 bits (846), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 169/294 (57%), Positives = 221/294 (75%), Gaps = 9/294 (3%)
Query: 28 KRRGRSKKVKFDGWGSIPLIEFLQSLGKDTTQQISRYDVTDIINKYVNENKLVHSVKKKR 87
KR+ R K+ +F GWGS LIEFL SLGKDT++ ISRYDV+D I KY+++ L+ KK+
Sbjct: 19 KRKARPKRFEFVGWGSRQLIEFLHSLGKDTSEMISRYDVSDTIAKYISKEGLLDPSNKKK 78
Query: 88 VVSDERLLSLFGKKSFLRIKIYDLLEAHYAENQFESDDDFLFSSDEENNLFSSEKQKSRK 147
VV D+RL+ LFG ++ R+K+YDLLE HY ENQ +SD DFL+ DE + SEK R
Sbjct: 79 VVCDKRLVLLFGTRTIFRMKVYDLLEKHYKENQDDSDFDFLY-EDEPQIICHSEKIAKRT 137
Query: 148 VPLKKLCLETPKSCWAAIVPDNIKLVYLKRSLVQDLLKDSETFECKVVGSFVRVKSDPND 207
+ K P+ +AAIV DNIKL+YL++SLVQ+LLK +TFE K++GSFVR+KSDPND
Sbjct: 138 SKVVK----KPRGTFAAIVSDNIKLLYLRKSLVQELLKSPDTFEGKMLGSFVRIKSDPND 193
Query: 208 YLQKNSHQLLQVIGTKKVPGTDDKSTEILLKVSNFVKDIRIATLSDDNFSEEECEDLRQR 267
YLQK +QL+QV G KK GTDD LL+V+N+VKD+ I+ LSDDNFS+EECEDL QR
Sbjct: 194 YLQKYPYQLVQVTGVKKEHGTDD----FLLQVTNYVKDVSISVLSDDNFSQEECEDLHQR 249
Query: 268 VKDGLLKRPTVVELQEKTQILHEDITKHWLVRELALLQKLIDRANVKGMAQRIS 321
+K+GLLK+PT+VE++EK + LH+D TKHWL RE+ LL++LIDRAN KG + +S
Sbjct: 250 IKNGLLKKPTIVEMEEKAKKLHKDQTKHWLGREIELLKRLIDRANEKGWRRELS 303
>sp|Q9SIV5|C3H19_ARATH Zinc finger CCCH domain-containing protein 19 OS=Arabidopsis thaliana
GN=NERD PE=1 SV=3
Length = 1773
Score = 113 bits (283), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 90/297 (30%), Positives = 155/297 (52%), Gaps = 27/297 (9%)
Query: 41 WGSIPLIEFLQSLGKDTTQQISRYDVTDIINKYVNENKLVHSVKKKRVVSDERLLSLFGK 100
W S L++ + + + + +V ++ Y+ L +K +V+ D RL +LFGK
Sbjct: 807 WASKELLDLVVHMRRGDRSFLPMLEVQTLLLAYIKRYNLRDPRRKSQVICDSRLQNLFGK 866
Query: 101 KSFLRIKIYDLLEAHYAENQFESDDDF---LFSSDEENNLFSSEKQKSRKVPLKKLCLET 157
++ +LL++H+ + + DD + ++E N++ E P+K +
Sbjct: 867 SHVGHFEMLNLLDSHFLKKEQNQADDIQGDIVDTEEPNHVDVDENLDH---PVKSGKDKK 923
Query: 158 PKSC--------------WAAIVPDNIKLVYLKRSLVQDLLKDSETFECKVVGSFVRVKS 203
K+ +AA+ NI L+YL+RSLV+DLL+DS FE KV +FVR++
Sbjct: 924 RKTRKKNVRKGRQSNLDDFAAVDMHNINLIYLRRSLVEDLLEDSTAFEEKVASAFVRLRI 983
Query: 204 DPNDYLQKNSHQLLQVIGTKKVP---GTDDKSTEILLKVSNFVKD--IRIATLSDDNFSE 258
N +++ ++L+QV+GT K P K+T+ +L++ N K I I +S+ +F+E
Sbjct: 984 SGNQ--KQDLYRLVQVVGTSKAPEPYKVGKKTTDYVLEILNLDKTEVISIDIISNQDFTE 1041
Query: 259 EECEDLRQRVKDGLLKRPTVVELQEKTQILHEDITKHWLVRELALLQKLIDRANVKG 315
+EC+ L+Q +K GL+ R TV ++QEK L E K+ L E+ L DRA+ G
Sbjct: 1042 DECKRLKQSIKCGLINRLTVGDIQEKAIALQEVRVKNLLEAEILRFSHLRDRASDMG 1098
>sp|Q9SD34|C3H44_ARATH Zinc finger CCCH domain-containing protein 44 OS=Arabidopsis
thaliana GN=At3g51120 PE=2 SV=3
Length = 1292
Score = 105 bits (261), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 98/320 (30%), Positives = 159/320 (49%), Gaps = 38/320 (11%)
Query: 21 SPQLTNLKRRGRS-----KKVKFD-GWGSIPLIEFLQSLGKDTTQQISRYDVTDIINKYV 74
SP L N K G++ KK D W + L+EF+ + T +S++DV ++ Y+
Sbjct: 294 SPTLPN-KLDGKNPSNILKKAPGDTSWATKELLEFVSFMKNGDTSVLSQFDVQGLLLDYI 352
Query: 75 NENKLVHSVKKKRVVSDERLLSLFGKKSFLRIKIYDLLEAHY--------AENQFESDDD 126
+ L ++K +V+ D+ L+ LFGK+ ++ LLE+H A+
Sbjct: 353 KKKNLRDPLQKSQVLCDQMLVKLFGKQRVGHFEMLKLLESHVLIQEKPKGAKTTNGETTH 412
Query: 127 FLFSSDEENNLF---------SSEKQKSRKVPLKKLCLETPKSCWAAIVPDNIKLVYLKR 177
+ S EE+++ ++ +V + L +AAI NI L+YL+R
Sbjct: 413 AVPSQIEEDSVHDPMVRDRRRKMRRKTDGRVQNENL------DAYAAIDVHNINLIYLRR 466
Query: 178 SLVQDLLKDSETFECKVVGSFVRVKSDPNDYLQK-NSHQLLQVIGTKKVPGT---DDKST 233
++ LL D + KVVG+ +R+K +D QK + H+L+QV+GT K + K+T
Sbjct: 467 KFLESLLDDINKVDEKVVGTILRIKVSGSD--QKLDIHRLVQVVGTSKAIASYQLGAKTT 524
Query: 234 EILLKVSNFVKD--IRIATLSDDNFSEEECEDLRQRVKDGLLKRPTVVELQEKTQILHED 291
+++L++ N K I I LSD N +E+EC+ LRQ +K GL KR TVV++ + L
Sbjct: 525 DVMLEILNLDKREVISIDQLSDQNITEDECKRLRQSIKCGLNKRLTVVDILKTAATLQAM 584
Query: 292 ITKHWLVRELALLQKLIDRA 311
L E+ L L DRA
Sbjct: 585 RINEALEAEILKLNHLRDRA 604
>sp|Q91FL8|VF306_IIV6 Putative SWIB domain-containing protein 306R OS=Invertebrate
iridescent virus 6 GN=IIV6-306R PE=3 SV=1
Length = 312
Score = 38.1 bits (87), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 29/47 (61%)
Query: 57 TTQQISRYDVTDIINKYVNENKLVHSVKKKRVVSDERLLSLFGKKSF 103
TT IS DV I + Y+ EN L +V K++++ D+ L SLF +SF
Sbjct: 258 TTSLISWDDVNKIFSDYIRENSLKDTVNKRKIILDDNLKSLFKSRSF 304
Score = 33.9 bits (76), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 55/118 (46%), Gaps = 4/118 (3%)
Query: 40 GWGSIPLI--EFLQSLGKDTTQQISRYDVTDIINKYVNENKLVHSVKKKRVVSDERLLSL 97
G G + +I + + LG D ++ SR DVT I K+V E KL + KK ++ D L+ L
Sbjct: 141 GLGKLRVITNDLAKFLGCDPSEMKSRNDVTKAICKHVEEKKLQNQENKKIIMCDTMLIDL 200
Query: 98 FGKKSFLRIKIYDLLEAHYAENQFESDDDF-LFSSDEENNLFSSEKQKSRKVPLKKLC 154
+ + + Y +++H E + L+ S+E + ++S + K C
Sbjct: 201 LRLEPNAQ-RTYTEIQSHLNHLFIEKTSELTLYPSEELIKFYDEHSKQSSSIGTNKWC 257
>sp|Q5UQ74|YR508_MIMIV Putative SWIB domain-containing protein R508 OS=Acanthamoeba
polyphaga mimivirus GN=MIMI_R508 PE=4 SV=1
Length = 335
Score = 37.0 bits (84), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 37/63 (58%), Gaps = 3/63 (4%)
Query: 61 ISRYDVTDIINKYVNENKLVHSVKKKRVVSDERLLSLFGKKSFLRIKIYDL---LEAHYA 117
+SR VT+++ KY +NK+ +S K+ ++ + ++ LFG K I Y++ L+ Y
Sbjct: 266 LSRSKVTELMYKYFTDNKMYNSKTKREIIPNSKIKKLFGMKEGDIITFYNMQTWLKKVYN 325
Query: 118 ENQ 120
ENQ
Sbjct: 326 ENQ 328
>sp|Q9USJ7|ETT1_SCHPO Negative regulator of ofd1 OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=nro1 PE=1 SV=1
Length = 393
Score = 35.4 bits (80), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 54/127 (42%), Gaps = 3/127 (2%)
Query: 160 SCWAAIVPDNIKLVYLKRSLVQDLLKDSETFECKVVGSFVRVKSDPNDYLQKNSHQLLQV 219
+ W V D Y K + +L + TF + +S+ +D + K S L
Sbjct: 263 ALWLKSVVDPNTPAYYKLIAQEAVLNNYTTFAEYYMDLLDNSESNVDDLINKASSWLNNS 322
Query: 220 IGTKKVPGTDDKSTEILLKVSNFVKDIRIAT---LSDDNFSEEECEDLRQRVKDGLLKRP 276
+ T V T DKS E LLK+++ D+ S DN+ +E C +++ G+ P
Sbjct: 323 VDTWNVIYTLDKSPERLLKLADIKMDLAQIVQDEASQDNYLKEACNAIKEAQGSGVELSP 382
Query: 277 TVVELQE 283
VE E
Sbjct: 383 DYVEFVE 389
>sp|Q96MI9|CBPC4_HUMAN Cytosolic carboxypeptidase 4 OS=Homo sapiens GN=AGBL1 PE=2 SV=2
Length = 1066
Score = 35.4 bits (80), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 68/155 (43%), Gaps = 15/155 (9%)
Query: 169 NIKLVYLKRSLVQDLLKDSETFECKVVGSFVRVKSDPNDYLQKNSHQLLQVIGTKKVPGT 228
N+K VY ++ ++ L + C +V +S+ +++L++ H+ QVI + PG
Sbjct: 705 NLKEVYFRQDVLCQTLGGNP---CPLVTITAMPESNSDEHLEQFRHRPYQVITARVHPGE 761
Query: 229 DDKSTEILLKVSNFVKDIRIATLSDDNFSEEECEDLRQRVKDGLLKRPTVVELQEKTQIL 288
+ S + + V +A L +NF + L DG V+ + +
Sbjct: 762 SNASWVMKGTLEFLVSSDPVARLLRENFIFKIIPMLN---PDG------VINGNHRCSLS 812
Query: 289 HEDITKHWLVRELALLQKLIDRANVKGMAQRISSI 323
ED+ + WL A LQ I A KG+ +SSI
Sbjct: 813 GEDLNRQWLSPS-AHLQPTIYHA--KGLLYHLSSI 844
>sp|Q5FQL0|KUP_GLUOX Probable potassium transport system protein kup OS=Gluconobacter
oxydans (strain 621H) GN=kup PE=3 SV=1
Length = 675
Score = 33.9 bits (76), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 37/84 (44%)
Query: 12 WVPEYDEPLSPQLTNLKRRGRSKKVKFDGWGSIPLIEFLQSLGKDTTQQISRYDVTDIIN 71
WVP +S + +RGRS S+P+ FL L + T ++ V N
Sbjct: 477 WVPLAIGIISTIIMTTWKRGRSLIAARQQADSMPMGSFLARLPQSRTIRVPGLAVFLTAN 536
Query: 72 KYVNENKLVHSVKKKRVVSDERLL 95
+ N L+H++K +V+ D L
Sbjct: 537 PDIVPNSLLHNLKHNKVLHDHILF 560
>sp|Q58125|HMDX_METJA H(2)-forming methylenetetrahydromethanopterin dehydrogenase-related
protein MJ0715 OS=Methanocaldococcus jannaschii (strain
ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
GN=MJ0715 PE=3 SV=1
Length = 338
Score = 33.1 bits (74), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 46/192 (23%), Positives = 89/192 (46%), Gaps = 25/192 (13%)
Query: 134 ENNLFSSEKQKSRKVPLKKLCLETPKSCWAAIVPDNIKLVYLKRSLVQDLLKDSETFECK 193
E +++E Q ++ V L K + P A +VP + L ++ + D +
Sbjct: 165 EGKEYATEDQINKLVELVKSVGKIPYVTPADVVPAVADMGALVTAVALVGVLDYYRVGTQ 224
Query: 194 VVGSFVRVKSDPNDYLQKNSHQLLQVIGTKKVPGTDDKSTEILLKVSNFVKDIRIATLSD 253
++ + P D ++K LQ I + + E L+KV N KD +++ +
Sbjct: 225 IINA-------PKDMIEKQILISLQTIASI----IETSGMEGLMKVFN--KDALLSS-AK 270
Query: 254 DNFSEEECEDLRQRVKDGLLKRPTVVELQEKTQILHEDITKHWLVRELALLQK---LIDR 310
+ +E EDL +K ++E +K+ I +DI++ +LV AL+++ LI +
Sbjct: 271 NMLIDERQEDLNLALK--------IIEEFDKSTIGEKDISQTYLVAPQALIKEAVSLIGK 322
Query: 311 ANVKGMAQRISS 322
+ V+GM +R S+
Sbjct: 323 SAVEGMIRRSSN 334
>sp|Q05024|TRI1_YEAST Protein TRI1 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=TRI1 PE=1 SV=1
Length = 226
Score = 32.7 bits (73), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 55/115 (47%), Gaps = 23/115 (20%)
Query: 43 SIPLIEFLQSLGKDTTQQISRYDVTDIINKYVNENKLVHSVKKKRVVSDERLLSLFGKKS 102
S PL +FL S +++ R V +I +Y+ E+ L + ++ ++ DE++ +FGKK
Sbjct: 127 SAPLQKFLGS------EELPRTQVVKMIWQYIKEHDLQNPKDRREILCDEKMEPIFGKKM 180
Query: 103 FLRIKIYDLLEAHYAENQFESDDDFLFSSDEENNLFSSEKQKSRKVPLKKLCLET 157
+ + LL H LF+ DE +++ ++ P K++ LE
Sbjct: 181 TM-FSMNKLLTKH------------LFNPDE----IVKHEEEQKQTPEKEIKLEN 218
>sp|Q5GSS5|SYA_WOLTR Alanine--tRNA ligase OS=Wolbachia sp. subsp. Brugia malayi (strain
TRS) GN=alaS PE=3 SV=1
Length = 875
Score = 32.7 bits (73), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 21/31 (67%), Positives = 21/31 (67%), Gaps = 4/31 (12%)
Query: 228 TDDKSTEILLKVSNFVKD--IRIATLSDDNF 256
TDDKS EI KVS F D IRIAT DDNF
Sbjct: 131 TDDKSYEIWRKVSGFSNDKIIRIAT--DDNF 159
>sp|A4WDQ6|SYA_ENT38 Alanine--tRNA ligase OS=Enterobacter sp. (strain 638) GN=alaS PE=3
SV=1
Length = 875
Score = 32.3 bits (72), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 35/67 (52%), Gaps = 6/67 (8%)
Query: 164 AIVPDNIKLVYLKRSLVQ------DLLKDSETFECKVVGSFVRVKSDPNDYLQKNSHQLL 217
++P N Y+ R +++ ++L +TF K+VG V V D + L++ Q+
Sbjct: 298 GVIPSNENRGYVLRRIIRRAVRHGNMLGAKDTFFYKLVGPLVGVMGDAGEELKRQQSQVE 357
Query: 218 QVIGTKK 224
QV+ T++
Sbjct: 358 QVLKTEE 364
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.134 0.377
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 119,843,959
Number of Sequences: 539616
Number of extensions: 5069608
Number of successful extensions: 16105
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 40
Number of HSP's that attempted gapping in prelim test: 16072
Number of HSP's gapped (non-prelim): 59
length of query: 334
length of database: 191,569,459
effective HSP length: 118
effective length of query: 216
effective length of database: 127,894,771
effective search space: 27625270536
effective search space used: 27625270536
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (28.1 bits)