BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019903
(334 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2J1P|A Chain A, Geranylgeranyl Diphosphate Synthase From Sinapis Alba In
Complex With Ggpp
pdb|2J1P|B Chain B, Geranylgeranyl Diphosphate Synthase From Sinapis Alba In
Complex With Ggpp
Length = 293
Score = 214 bits (545), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 112/292 (38%), Positives = 166/292 (56%), Gaps = 22/292 (7%)
Query: 44 TYWTTLITEIDQNLEKAITVKYPEQIYESMRYSVLAKGTKRAPPVMCVAACELFGVNRIA 103
+Y +++ L+ A+ ++ P +I+E+ RYS+LA G KR PV+C+AACEL G
Sbjct: 15 SYIIRKADSVNKALDSAVPLREPLKIHEAXRYSLLA-GGKRVRPVLCIAACELVGGEESL 73
Query: 104 AFPTACALEMVHAASLIHDDLPCMDDDPSRRGQPSNHTVYGVDIAILAGDALFPLGFQHI 163
A P ACA+E +H SLIHDDLPC D+D RRG+P+NH VYG D+A+LAGDAL F+H+
Sbjct: 74 AXPAACAVEXIHTXSLIHDDLPCXDNDDLRRGKPTNHKVYGEDVAVLAGDALLSFAFEHL 133
Query: 164 VSHTPPHLVPEPRVLRVIAEIARAVGSTGMAAGQFLDLEGEP--------NLVEFVQEKK 215
S T + P RV+R + E+A+A+G+ G+ AGQ +D+ E ++F+ K
Sbjct: 134 ASATSSEVSP-ARVVRAVGELAKAIGTEGLVAGQVVDISSEGLDLNNVGLEHLKFIHLHK 192
Query: 216 FGEMSECSAVCGGFLAGADDDEIQSLRRYGRAVGVLYQVVDDILEAKAQTPRDEEXXXXX 275
+ E SAV GG + G D+EI+ LR++ R +G+L+QVVDDIL+ +
Sbjct: 193 TAALLEASAVLGGIIGGGSDEEIERLRKFARCIGLLFQVVDDILDVTKSSK--------- 243
Query: 276 XXSYVAFYGVEKAMXXXXXXXXXXXXXXDRFKKYGDNVLPLYSFIDYAADRE 327
+Y G+EK+ F D V PL + +Y A+R+
Sbjct: 244 -LTYPKLXGLEKSREFAEKLNTEARDQLLGFDS--DKVAPLLALANYIANRQ 292
>pdb|3KRA|A Chain A, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Magnesium
pdb|3KRA|D Chain D, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Magnesium
pdb|3KRC|A Chain A, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Ipp
pdb|3KRC|D Chain D, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Ipp
pdb|3KRF|A Chain A, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Magnesium, Ipp, And Dmaspp (I)
pdb|3KRF|D Chain D, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Magnesium, Ipp, And Dmaspp (I)
pdb|3KRO|A Chain A, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Magnesium, Ipp, And Dmaspp (Ii)
pdb|3KRO|D Chain D, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Magnesium, Ipp, And Dmaspp (Ii)
pdb|3KRP|A Chain A, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Magnesium And Gpp
pdb|3KRP|D Chain D, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Magnesium And Gpp
pdb|3OAB|A Chain A, Mint Deletion Mutant Of Heterotetrameric Geranyl
Pyrophosphate Synthase In Complex With Ligands
pdb|3OAB|D Chain D, Mint Deletion Mutant Of Heterotetrameric Geranyl
Pyrophosphate Synthase In Complex With Ligands
pdb|3OAC|A Chain A, Mint Deletion Mutant Of Heterotetrameric Geranyl
Pyrophosphate Synthase In Complex With Ligands
pdb|3OAC|D Chain D, Mint Deletion Mutant Of Heterotetrameric Geranyl
Pyrophosphate Synthase In Complex With Ligands
Length = 295
Score = 207 bits (526), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 99/227 (43%), Positives = 146/227 (64%), Gaps = 9/227 (3%)
Query: 40 FDLKTYWTTLITEIDQNLEKAITVKYPEQIYESMRYSVLAKGTKRAPPVMCVAACELFGV 99
FD Y +++ LE A+ +K P +I+ESMRYS+LA G KR P++C+AACEL G
Sbjct: 2 FDFDGYMLRKAKSVNKALEAAVQMKEPLKIHESMRYSLLA-GGKRVRPMLCIAACELVGG 60
Query: 100 NRIAAFPTACALEMVHAASLIHDDLPCMDDDPSRRGQPSNHTVYGVDIAILAGDALFPLG 159
+ A P ACA+EM+H SL+HDDLPCMD+D RRG+P+NH +G +A+LAGDAL
Sbjct: 61 DESTAMPAACAVEMIHTMSLMHDDLPCMDNDDLRRGKPTNHMAFGESVAVLAGDALLSFA 120
Query: 160 FQHIVSHTPPHLVPEPRVLRVIAEIARAVGSTGMAAGQFLDL--EGEPNL----VEFVQE 213
F+H+ + T P R++RV+ E+A ++GS G+ AGQ +D+ EG + +EF+
Sbjct: 121 FEHVAAATKG--APPERIVRVLGELAVSIGSEGLVAGQVVDVCSEGMAEVGLDHLEFIHH 178
Query: 214 KKFGEMSECSAVCGGFLAGADDDEIQSLRRYGRAVGVLYQVVDDILE 260
K + + S V G L G ++E+ LR++ +G+L+QVVDDIL+
Sbjct: 179 HKTAALLQGSVVLGAILGGGKEEEVAKLRKFANCIGLLFQVVDDILD 225
>pdb|2J1O|A Chain A, Geranylgeranyl Diphosphate Synthase From Sinapis Alba
Length = 268
Score = 179 bits (454), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 106/286 (37%), Positives = 157/286 (54%), Gaps = 35/286 (12%)
Query: 44 TYWTTLITEIDQNLEKAITVKYPEQIYESMRYSVLAKGTKRAPPVMCVAACELFGVNRIA 103
+Y +++ L+ A+ ++ P +I+E+MRYS+LA G KR PV+C+AACEL G
Sbjct: 15 SYIIRKADSVNKALDSAVPLREPLKIHEAMRYSLLA-GGKRVRPVLCIAACELVGGEESL 73
Query: 104 AFPTACALEMVHAASLIHDDLPCMDDDPSRRGQPSNHTVYGVDIAILAGDALFPLGFQHI 163
A P ACA+EM+H SLIHDD VYG D+A+LAGDAL F+H+
Sbjct: 74 AMPAACAVEMIHTMSLIHDD------------------VYGEDVAVLAGDALLSFAFEHL 115
Query: 164 VSHTPPHLVPEPRVLRVIAEIARAVGSTGMAAGQFLDLE--GEPNLVEFVQEKKFGEMSE 221
S T + P RV+R + E+A+A+G+ G+ AGQ +D+ G +L +F+ K + E
Sbjct: 116 ASATSSEVSP-ARVVRAVGELAKAIGTEGLVAGQVVDISNVGLEHL-KFIHLHKTAALLE 173
Query: 222 CSAVCGGFLAGADDDEIQSLRRYGRAVGVLYQVVDDILEAKAQTPRDEEXXXXXXXSYVA 281
SAV GG + G D+EI+ LR++ R +G+L+QVVDDIL+ T D+ +Y
Sbjct: 174 ASAVLGGIIGGGSDEEIERLRKFARCIGLLFQVVDDILDV---TIADK-------LTYPK 223
Query: 282 FYGVEKAMXXXXXXXXXXXXXXDRFKKYGDNVLPLYSFIDYAADRE 327
G+EK+ F D V PL + +Y A+R+
Sbjct: 224 LMGLEKSREFAEKLNTEARDQLLGFDS--DKVAPLLALANYIANRQ 267
>pdb|3UCA|A Chain A, Crystal Structure Of Isoprenoid Synthase (Target
Efi-501974) From Clostridium Perfringens
pdb|3UCA|B Chain B, Crystal Structure Of Isoprenoid Synthase (Target
Efi-501974) From Clostridium Perfringens
Length = 324
Score = 145 bits (366), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 88/264 (33%), Positives = 140/264 (53%), Gaps = 16/264 (6%)
Query: 36 RSTQFDLKTYWTTLITEIDQNLEKAITV--KYPEQIYESMRYSVLAKGTKRAPPVMCVAA 93
R T D +L E+DQ+L+ +Y + +Y+SM YS+ G KR P++ + +
Sbjct: 27 RKTLEDTAMNINSLKEEVDQSLKAYFNKDREYNKVLYDSMAYSINV-GGKRIRPILMLLS 85
Query: 94 CELFGVNRIAAFPTACALEMVHAASLIHDDLPCMDDDPSRRGQPSNHTVYGVDIAILAGD 153
++ + A A+EM+H SLIHDDLPCMD+D RRG+P+NH V+G IA+LAGD
Sbjct: 86 YYIYKSDYKKILTPAMAIEMIHTYSLIHDDLPCMDNDDLRRGKPTNHKVFGEAIAVLAGD 145
Query: 154 ALFPLGFQHIVSHTPPHLVPEPRVLRVIAEIARAVGSTGMAAGQFLDLEGEP------NL 207
AL + +V ++ L L+ IA A GS GM GQ +D+ E
Sbjct: 146 ALLNEAMKILVDYS---LEEGKSALKATKIIADAAGSDGMIGGQIVDIINEDKEEISLKE 202
Query: 208 VEFVQEKKFGEMSECSAVCGGFLAGADDDEIQSLRRYGRAVGVLYQVVDDILE----AKA 263
++++ KK GE+ + S + G LA A + +I+ L +G +G+ +Q+ DDIL+ AK
Sbjct: 203 LDYMHLKKTGELIKASIMSGAVLAEASEGDIKKLEGFGYKLGLAFQIKDDILDVVGNAKD 262
Query: 264 QTPRDEEXXXXXXXSYVAFYGVEK 287
+ +Y+ +G+E+
Sbjct: 263 LGKNVHKDQESNKNNYITIFGLEE 286
>pdb|3KRA|B Chain B, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Magnesium
pdb|3KRA|C Chain C, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Magnesium
pdb|3KRC|B Chain B, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Ipp
pdb|3KRC|C Chain C, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Ipp
pdb|3KRF|B Chain B, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Magnesium, Ipp, And Dmaspp (I)
pdb|3KRF|C Chain C, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Magnesium, Ipp, And Dmaspp (I)
pdb|3KRO|B Chain B, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Magnesium, Ipp, And Dmaspp (Ii)
pdb|3KRO|C Chain C, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Magnesium, Ipp, And Dmaspp (Ii)
pdb|3KRP|B Chain B, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Magnesium And Gpp
pdb|3KRP|C Chain C, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Magnesium And Gpp
Length = 274
Score = 140 bits (352), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 83/244 (34%), Positives = 133/244 (54%), Gaps = 17/244 (6%)
Query: 42 LKTYWTTLITEIDQNLEKAITVKYPEQIYESMRYSVLAKGTKRAPPVMCVAACELFGVNR 101
++ YW + +I++ L+K+IT++ PE ++ M + A A +C+AACEL G +R
Sbjct: 1 MQPYWAAIEADIERYLKKSITIRPPETVFGPMHHLTFA-APATAASTLCLAACELVGGDR 59
Query: 102 IAAFPTACALEMVHAASLIHDDLPCMDDDPSRRGQPSNHTVYGVDIAILAGDALFPLGFQ 161
A A A+ +VHAA+ +H+ LP + D +P+ YG ++ +L GD + P GF+
Sbjct: 60 SQAMAAAAAIHLVHAAAYVHEHLP-LTDGSRPVSKPAIQHKYGPNVELLTGDGIVPFGFE 118
Query: 162 HIVSHTPPHLVPEP-RVLRVIAEIARAVGSTGMAAG-----QFLDLEGEPNLVEFVQEKK 215
+ P +P R+LRVI EI+RA G GM +G + +D + +E+V +KK
Sbjct: 119 LLAGSVDPARTDDPDRILRVIIEISRAGGPEGMISGLHREEEIVDGNTSLDFIEYVCKKK 178
Query: 216 FGEMSECSAVCGGFLAGADDDEIQSLRRYGRAVGVL---------YQVVDDILEAKAQTP 266
+GEM C A CG L GA ++EIQ LR +G G L +Q++D+ + K +
Sbjct: 179 YGEMHACGAACGAILGGAAEEEIQKLRNFGLYQGTLRGMMEMKNSHQLIDENIIGKLKEL 238
Query: 267 RDEE 270
EE
Sbjct: 239 ALEE 242
>pdb|3OAB|B Chain B, Mint Deletion Mutant Of Heterotetrameric Geranyl
Pyrophosphate Synthase In Complex With Ligands
pdb|3OAB|C Chain C, Mint Deletion Mutant Of Heterotetrameric Geranyl
Pyrophosphate Synthase In Complex With Ligands
pdb|3OAC|B Chain B, Mint Deletion Mutant Of Heterotetrameric Geranyl
Pyrophosphate Synthase In Complex With Ligands
pdb|3OAC|C Chain C, Mint Deletion Mutant Of Heterotetrameric Geranyl
Pyrophosphate Synthase In Complex With Ligands
Length = 264
Score = 135 bits (341), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 82/244 (33%), Positives = 130/244 (53%), Gaps = 27/244 (11%)
Query: 42 LKTYWTTLITEIDQNLEKAITVKYPEQIYESMRYSVLAKGTKRAPPVMCVAACELFGVNR 101
++ YW + +I++ L+K+IT++ PE ++ M + A A +C+AACEL G +R
Sbjct: 1 MQPYWAAIEADIERYLKKSITIRPPETVFGPMHHLTFA-APATAASTLCLAACELVGGDR 59
Query: 102 IAAFPTACALEMVHAASLIHDDLPCMDDDPSRRGQPSNHTVYGVDIAILAGDALFPLGFQ 161
A A A+ +VHAA+ +H+ LP P+ YG ++ +L GD + P GF+
Sbjct: 60 SQAMAAAAAIHLVHAAAYVHEHLP-----------PAIQHKYGPNVELLTGDGIVPFGFE 108
Query: 162 HIVSHTPPHLVPEP-RVLRVIAEIARAVGSTGMAAG-----QFLDLEGEPNLVEFVQEKK 215
+ P +P R+LRVI EI+RA G GM +G + +D + +E+V +KK
Sbjct: 109 LLAGSVDPARTDDPDRILRVIIEISRAGGPEGMISGLHREEEIVDGNTSLDFIEYVCKKK 168
Query: 216 FGEMSECSAVCGGFLAGADDDEIQSLRRYGRAVGVL---------YQVVDDILEAKAQTP 266
+GEM C A CG L GA ++EIQ LR +G G L +Q++D+ + K +
Sbjct: 169 YGEMHACGAACGAILGGAAEEEIQKLRNFGLYQGTLRGMMEMKNSHQLIDENIIGKLKEL 228
Query: 267 RDEE 270
EE
Sbjct: 229 ALEE 232
>pdb|1RTR|A Chain A, Crystal Structure Of S. Aureus Farnesyl Pyrophosphate
Synthase
pdb|1RTR|B Chain B, Crystal Structure Of S. Aureus Farnesyl Pyrophosphate
Synthase
Length = 301
Score = 130 bits (328), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 81/218 (37%), Positives = 118/218 (54%), Gaps = 10/218 (4%)
Query: 49 LITEIDQNLEKAITVKYPE-QIYESMRYSVLAKGTKRAPPVMCVAACELFGVNRIAAFPT 107
LI E++ L AI + Q+ ESM YS+ A G KR PV+ + + +
Sbjct: 9 LIDEVNNELSVAINKSVMDTQLEESMLYSLNA-GGKRIRPVLLLLTLDSLNTEYELGMKS 67
Query: 108 ACALEMVHAASLIHDDLPCMDDDPSRRGQPSNHTVYGVDIAILAGDALFPLGFQHIVSHT 167
A ALEM+H SLIHDDLP MD+D RRG+ +NH VYG AILAGDAL F+ I S
Sbjct: 68 AIALEMIHTYSLIHDDLPAMDNDDYRRGKLTNHKVYGEWTAILAGDALLTKAFELISS-- 125
Query: 168 PPHLVPEPRVLRVIAEIARAVGSTGMAAGQFLDL--EGEP---NLVEFVQEKKFGEMSEC 222
L E ++ +V+ ++ A G GM GQ LD+ EG+P +E + + K G +
Sbjct: 126 DDRLTDEVKI-KVLQRLSIASGHVGMVGGQMLDMQSEGQPIDLETLEMIHKTKTGALLTF 184
Query: 223 SAVCGGFLAGADDDEIQSLRRYGRAVGVLYQVVDDILE 260
+ + +A DD + L Y +G+++Q+ DD+L+
Sbjct: 185 AVMSAADIANVDDTTKEHLESYSYHLGMMFQIKDDLLD 222
>pdb|4F62|A Chain A, Crystal Structure Of A Putative Farnesyl-Diphosphate
Synthase From Marinomonas Sp. Med121 (Target Efi-501980)
pdb|4F62|B Chain B, Crystal Structure Of A Putative Farnesyl-Diphosphate
Synthase From Marinomonas Sp. Med121 (Target Efi-501980)
Length = 317
Score = 128 bits (321), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 95/304 (31%), Positives = 144/304 (47%), Gaps = 24/304 (7%)
Query: 40 FDLKTYWTTLITEIDQNLEKAITVKYP-EQIYESMRYSVLAKGTKRAPPVMCVAACELFG 98
+LK + T + +DQ LE+ ++ P Q++ +MRYS+ G KR P++ A+ +L G
Sbjct: 3 MNLKQFSTYTQSRVDQYLEQQLSDYAPANQLHNAMRYSLF-NGGKRIRPMLTYASAQLVG 61
Query: 99 VNRIAAFPTACALEMVHAASLIHDDLPCMDDDPSRRGQPSNHTVYGVDIAILAGDALFPL 158
+A ALE +HA SLIHDDLP MD+D RRG+P+ H + AILAGDAL
Sbjct: 62 DISSLTDASAAALESIHAYSLIHDDLPAMDNDELRRGKPTCHIQFDEATAILAGDALQTF 121
Query: 159 GFQHIVSHTPPHLVPEPRVLRVIAEIARAVGSTGMAAGQFLDLEGEP---NLVEFVQE-- 213
F+ + + P PE +++I E+ A G GM GQ +DL E +L E Q
Sbjct: 122 AFELLSN--PTSAQPE-LAIKLIQELVVASGRNGMITGQMIDLSSENKNISLAELEQMHV 178
Query: 214 KKFGEMSECSAVCGGFLAG-ADDDEIQSLRRYGRAVGVLYQVVDDILEAKAQTP------ 266
K G + + S G G +++ L Y A+G+ +QV DDI++ + T
Sbjct: 179 HKTGALIKASVRMGALSTGQVKPEQLAKLDAYAHAIGLAFQVQDDIIDLTSDTETLGKTQ 238
Query: 267 -RDEEXXXXXXXSYVAFYGVEKAMXXXXXXXXXXXXXXDRFKKYGDNVLPLYSFIDYAAD 325
D E +Y G++ A + ++GD PL +Y D
Sbjct: 239 FSDAE---ANKATYPKLLGLDGAKALVVRLHEQAIA---QISEFGDKSQPLTDLANYIID 292
Query: 326 REFS 329
R +
Sbjct: 293 RNHA 296
>pdb|3QKC|B Chain B, Crystal Structure Of Geranyl Diphosphate Synthase Small
Subunit From Antirrhinum Majus
pdb|3QKC|A Chain A, Crystal Structure Of Geranyl Diphosphate Synthase Small
Subunit From Antirrhinum Majus
Length = 273
Score = 126 bits (317), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 72/213 (33%), Positives = 119/213 (55%), Gaps = 8/213 (3%)
Query: 43 KTYWTTLITEIDQNLEKAITVKYPEQIYESMRYSVLAKGTKRAPPVMCVAACELFGVNRI 102
+TY T+ ++I+ L+KAI ++ PE ++E M + A + + +CVAACEL G +R
Sbjct: 7 QTYRATIESDIESYLKKAIPIRAPESVFEPMHHLTFA-APRTSASALCVAACELVGGDRS 65
Query: 103 AAFPTACALEMVHAASLIHDDLPCMDDDPSRRGQPSNHTVYGVDIAILAGDALFPLGFQH 162
A A A+ ++H A+ H++LP + D P + + + + +I +L GD + P G +
Sbjct: 66 DAMAAAAAVHLMHVAAYTHENLP-LTDGPMSKSEIQHK--FDPNIELLTGDGIIPFGLEL 122
Query: 163 IVSHTPPHLVPEPRVLRVIAEIARAVGSTGMAAGQFLDLE----GEPNLVEFVQEKKFGE 218
+ P R+LR I E+ R +GS G+ GQ+ +L + L+E+V +KK G
Sbjct: 123 MARSMDPTRNNPDRILRAIIELTRVMGSEGIVEGQYHELGLNQLNDLELIEYVCKKKEGT 182
Query: 219 MSECSAVCGGFLAGADDDEIQSLRRYGRAVGVL 251
+ C A CG L G D+D+I+ LRR+G VG +
Sbjct: 183 LHACGAACGAILGGCDEDKIEKLRRFGLYVGTV 215
>pdb|1WY0|A Chain A, Crystal Structure Of Geranylgeranyl Pyrophosphate
Synthetase From Pyrococcus Horikoshii Ot3
Length = 342
Score = 125 bits (313), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 77/215 (35%), Positives = 121/215 (56%), Gaps = 17/215 (7%)
Query: 53 IDQNLEKAITVKYPEQIYESMRYSVLAKGTKRAPPVMCVAACELFGVNRIAAFPTACALE 112
ID+ + + I K P +YE+ R+ LA G KR P + + + E G + + A A A+E
Sbjct: 18 IDEKIFELIPEKDPRVLYEAARHYPLA-GGKRVRPFVVLTSTEAVGGDPLRAIYPAVAIE 76
Query: 113 MVHAASLIHDDLPCMDDDPSRRGQPSNHTVYGVDIAILAGDALFPLGFQHIV-SHTPPHL 171
++H SL+HDD+ MD D +RRG+P+ H ++GV++AILAGD LF F+ + + PP
Sbjct: 77 LIHNYSLVHDDI--MDMDETRRGKPTVHRIWGVNMAILAGDLLFSKAFEAVARAEIPPE- 133
Query: 172 VPEPRVLRVIAEIARAVGSTGMAAGQFLDLEGEPNLVEFVQE------KKFGEMSECSAV 225
+ RVL VI + S + GQ DLE E ++E K G + E SA
Sbjct: 134 -KKARVLEVIVK-----ASNELCEGQARDLEFEKKSTVTIEEYMEMISGKTGALFEASAK 187
Query: 226 CGGFLAGADDDEIQSLRRYGRAVGVLYQVVDDILE 260
GG + +++ I++L +GR VG+ +Q+ DD+L+
Sbjct: 188 VGGIIGTDNEEYIKALSSWGRNVGIAFQIWDDVLD 222
>pdb|3P8R|A Chain A, Crystal Structure Of Polyprenyl Synthase From Vibrio
Cholerae
Length = 302
Score = 118 bits (296), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 89/260 (34%), Positives = 124/260 (47%), Gaps = 20/260 (7%)
Query: 42 LKTYWTTLITEIDQNLEKAITVKYPEQIYESMRYSVLAKGTKRAPPVMCVAACELFGVNR 101
L +Y ++DQ L + P + E+MRY +L G KRA P + ++ G
Sbjct: 13 LSSYQQRNNQQLDQWLNRIPFQTLP--LIEAMRYGLLLGG-KRARPYLVYITGQMLGCEL 69
Query: 102 IAAFPTACALEMVHAASLIHDDLPCMDDDPSRRGQPSNHTVYGVDIAILAGDALFPLGFQ 161
A A+E +HA SLIHDDLP MDDD RRG+P+ H + AIL GDAL L F
Sbjct: 70 SDLDTPASAVECIHAYSLIHDDLPAMDDDELRRGKPTCHIQFDEATAILTGDALQTLAFT 129
Query: 162 HIVSHTPPHLVPEPRVLRVIAEIARAVGSTGMAAGQFLDLEGEPNLV-----EFVQEKKF 216
I++ E + + ++ +A A G+ GM GQ LDL E L+ E + K
Sbjct: 130 -ILAEGDLSAAGETQRVAMLQALAEASGAQGMCLGQALDLAAENRLISLEELETIHRNKT 188
Query: 217 GEMSECSAVCGGFLAGADDDE-IQSLRRYGRAVGVLYQVVDDILEAKAQTP-------RD 268
G + C+ G AG + L RY AVG+ +QV DDIL+ + T D
Sbjct: 189 GALMRCAIRLGALAAGEKGRAMLPHLDRYAEAVGLAFQVQDDILDIISDTETLGKPQGSD 248
Query: 269 EEXXXXXXXSYVAFYGVEKA 288
+E +Y A G+E A
Sbjct: 249 QE---LNKSTYPALLGLEGA 265
>pdb|3M9U|A Chain A, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Lactobacillus Brevis Atcc 367
pdb|3M9U|B Chain B, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Lactobacillus Brevis Atcc 367
pdb|3M9U|C Chain C, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Lactobacillus Brevis Atcc 367
pdb|3M9U|D Chain D, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Lactobacillus Brevis Atcc 367
pdb|3PDE|A Chain A, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Lactobacillus Brevis Atcc 367 Complexed With
Isoprenyl Diphosphate And Magnesium
pdb|3PDE|B Chain B, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Lactobacillus Brevis Atcc 367 Complexed With
Isoprenyl Diphosphate And Magnesium
pdb|3PDE|C Chain C, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Lactobacillus Brevis Atcc 367 Complexed With
Isoprenyl Diphosphate And Magnesium
pdb|3PDE|D Chain D, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Lactobacillus Brevis Atcc 367 Complexed With
Isoprenyl Diphosphate And Magnesium
Length = 309
Score = 117 bits (293), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 71/200 (35%), Positives = 109/200 (54%), Gaps = 12/200 (6%)
Query: 68 QIYESMRYSVLAKGTKRAPPVMCVAACELFGVNRIAA--FPTACALEMVHAASLIHDDLP 125
Q+ +M YSVLA G KR P++ VA + GV + + ALE++H SLIHDDLP
Sbjct: 35 QLAAAMTYSVLAGG-KRLRPLLTVATMQSLGVTFVPERHWRPVMALELLHTYSLIHDDLP 93
Query: 126 CMDDDPSRRGQPSNHTVYGVDIAILAGDALFPLGFQHIVSHTPPHLVPEPRVLRVIAEIA 185
MD+D RRG+P+NH +G +A LAGD L L FQ + + +P ++ +A
Sbjct: 94 AMDNDALRRGEPTNHVKFGAGMATLAGDGLLTLAFQWLTATD----LPATMQAALVQALA 149
Query: 186 RAVGSTGMAAGQFLDLEGEP-NL----VEFVQEKKFGEMSECSAVCGGFLAGADDDEIQS 240
A G +GM AGQ D++ E NL + + ++K G + + G L A + + +
Sbjct: 150 TAAGPSGMVAGQAKDIQSEHVNLPLSQLRVLHKEKTGALLHYAVQAGLILGQAPEAQWPA 209
Query: 241 LRRYGRAVGVLYQVVDDILE 260
++ A G+ +Q+ DDIL+
Sbjct: 210 YLQFADAFGLAFQIYDDILD 229
>pdb|3P41|A Chain A, Crystal Structure Of Polyprenyl Synthetase From
Pseudomonas Fluorescens Pf-5 Complexed With Magnesium
And Isoprenyl Pyrophosphate
Length = 303
Score = 110 bits (276), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 85/232 (36%), Positives = 122/232 (52%), Gaps = 10/232 (4%)
Query: 42 LKTYWTTLITEIDQNLEKAITVKYPE--QIYESMRYSVLAKGTKRAPPVMCVAACELFGV 99
L Y + +D T PE ++YE+ RYSV G KR P++ AACE G
Sbjct: 10 LTAYQASSQARVDAAXHTLFTAPSPELARLYEAXRYSV-XNGGKRVRPLLAYAACEALGG 68
Query: 100 NRIAAFPTACALEMVHAASLIHDDLPCMDDDPSRRGQPSNHTVYGVDIAILAGDALFPLG 159
A ACA+E++HA SL+HDDLP DDD RRGQP+ H + AILAGD L L
Sbjct: 69 KPEQANGAACAVELIHAYSLVHDDLPAXDDDDLRRGQPTTHKAFDEAXAILAGDGLQSLA 128
Query: 160 FQHIVSHTPPHLVPEPRVLRVIAEIARAVGSTGMAAGQFLDLEG-----EPNLVEFVQEK 214
F ++ E R LR + +A+A G G GQ +DL + +E+
Sbjct: 129 FSALLDPALSDASAEIR-LRXVTTLAQAAGPAGXVGGQAIDLGSVGLKLDQQALEYXHRH 187
Query: 215 KFGEMSECSAVCGGFLAG-ADDDEIQSLRRYGRAVGVLYQVVDDILEAKAQT 265
K G + E S + G +G A+ E+++L+ Y +A+G+ +QV DDIL+ ++ T
Sbjct: 188 KTGALIEASVILGALASGRAEKGELKALQTYAQAIGLAFQVQDDILDVESDT 239
>pdb|3LJI|A Chain A, Crystal Structure Of Putative Geranyltranstransferase From
Pseudomonas Fluorescens Pf-5
pdb|3LSN|A Chain A, Crystal Structure Of Putative Geranyltranstransferase From
Pseudomonas Fluorescens Pf-5 Complexed With Magnesium
Length = 304
Score = 110 bits (275), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 85/232 (36%), Positives = 122/232 (52%), Gaps = 10/232 (4%)
Query: 42 LKTYWTTLITEIDQNLEKAITVKYPE--QIYESMRYSVLAKGTKRAPPVMCVAACELFGV 99
L Y + +D T PE ++YE+ RYSV G KR P++ AACE G
Sbjct: 3 LTAYQASSQARVDAAXHTLFTAPSPELARLYEAXRYSV-XNGGKRVRPLLAYAACEALGG 61
Query: 100 NRIAAFPTACALEMVHAASLIHDDLPCMDDDPSRRGQPSNHTVYGVDIAILAGDALFPLG 159
A ACA+E++HA SL+HDDLP DDD RRGQP+ H + AILAGD L L
Sbjct: 62 KPEQANGAACAVELIHAYSLVHDDLPAXDDDDLRRGQPTTHKAFDEACAILAGDGLQSLA 121
Query: 160 FQHIVSHTPPHLVPEPRVLRVIAEIARAVGSTGMAAGQFLDLEG-----EPNLVEFVQEK 214
F ++ E R LR + +A+A G G GQ +DL + +E+
Sbjct: 122 FSALLDPALSDASAEIR-LRXVTTLAQAAGPAGXVGGQAIDLGSVGLKLDQQALEYXHRH 180
Query: 215 KFGEMSECSAVCGGFLAG-ADDDEIQSLRRYGRAVGVLYQVVDDILEAKAQT 265
K G + E S + G +G A+ E+++L+ Y +A+G+ +QV DDIL+ ++ T
Sbjct: 181 KTGALIEASVILGALASGRAEKGELKALQTYAQAIGLAFQVQDDILDVESDT 232
>pdb|3LVS|A Chain A, Crystal Structure Of Farnesyl Diphosphate Synthase From
Rhodobacter Capsulatus Sb1003
pdb|3LVS|B Chain B, Crystal Structure Of Farnesyl Diphosphate Synthase From
Rhodobacter Capsulatus Sb1003
Length = 298
Score = 106 bits (264), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 76/228 (33%), Positives = 120/228 (52%), Gaps = 19/228 (8%)
Query: 44 TYWTTLITEIDQNLEKAITV---KYPE-QIYESMRYSVLAKGTKRAPPVMCVAACELFGV 99
+ ++ + EI +E A+ + P + ++M Y+ A+G KR + + + + G+
Sbjct: 2 SLFSERLKEIQDAVETAMAAAIGRLPAGDLRDAMAYA--AQGGKRLRAFLAIESAAIHGI 59
Query: 100 NRIAAFPTACALEMVHAASLIHDDLPCMDDDPSRRGQPSNHTVYGVDIAILAGDALFPLG 159
+ A P A A+E +HA SL+HDD+PCMD+D RRG P+ H + A+LAGDAL L
Sbjct: 60 SMAQAMPAALAVEALHAYSLVHDDMPCMDNDDLRRGLPTVHKKWDDATAVLAGDALQTLA 119
Query: 160 FQHIVSHTPPHLVPEPRVLRVIAEIARAVGSTGMAAGQFLDLEGEPNLVEF-------VQ 212
F+ T P L + ++A +A+A G+ GM GQ LD+ E V +Q
Sbjct: 120 FELC---TDPVLGSAENRVALVAALAQASGAEGMVYGQALDIAAETAAVPLTLDEIIRLQ 176
Query: 213 EKKFGEMSECSAVCGGFLAGADDDEIQSLRRYGRAVGVLYQVVDDILE 260
K G + +A G LAGAD + + Y A+G+ +Q+ DDIL+
Sbjct: 177 AGKTGALISFAAQAGAILAGADRGPLTA---YATALGLAFQIADDILD 221
>pdb|3P8L|A Chain A, Crystal Structure Of Polyprenyl Synthase From Enterococcus
Faecalis V583
pdb|3P8L|B Chain B, Crystal Structure Of Polyprenyl Synthase From Enterococcus
Faecalis V583
Length = 302
Score = 105 bits (263), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 85/235 (36%), Positives = 124/235 (52%), Gaps = 21/235 (8%)
Query: 67 EQIYESMRYSVLAKGTKRAPPVMCVAACELFGVN-RIAAFPTACALEMVHAASLIHDDLP 125
E++ E+M YS+ A G KR P++ + F + A +LEM+H SLIHDDLP
Sbjct: 36 ERLKEAMLYSIHAGG-KRLRPLLVLTTVAAFQKEMETQDYQVAASLEMIHTYSLIHDDLP 94
Query: 126 CMDDDPSRRGQPSNHTVYGVDIAILAGDALFPLGFQHIVSHTPPHLVPEPRVLRVIAEIA 185
MDDD RRG+P+NH V+G AILAGD L FQ + +VL ++ ++A
Sbjct: 95 AMDDDDLRRGKPTNHKVFGEATAILAGDGLLTGAFQLLSLSQLG---LSEKVL-LMQQLA 150
Query: 186 RAVGSTGMAAGQFLDLEGEP---NLVEF--VQEKKFGEMSECSAVCGGFLAGADDDEIQS 240
+A G+ GM +GQ D+EGE L E V EKK G + E + + GG LA ++ I
Sbjct: 151 KAAGNQGMVSGQMGDIEGEKVSLTLEELAAVHEKKTGALIEFALIAGGVLANQTEEVIGL 210
Query: 241 LRRYGRAVGVLYQVVDDILEAKA-------QTPRDEEXXXXXXXSYVAFYGVEKA 288
L ++ G+ +Q+ DD+L+A + + RDE +Y A G+ A
Sbjct: 211 LTQFAHHYGLAFQIRDDLLDATSTEADLGKKVGRDE---ALNKSTYPALLGIAGA 262
>pdb|3LOM|A Chain A, Crystal Structure Of Geranyltransferase From Legionella
Pneumophila
pdb|3LOM|B Chain B, Crystal Structure Of Geranyltransferase From Legionella
Pneumophila
Length = 313
Score = 103 bits (256), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 70/205 (34%), Positives = 111/205 (54%), Gaps = 9/205 (4%)
Query: 68 QIYESMRYSVLAKGTKRAPPVMCVAACELFGVNRIAAFPTACALEMVHAASLIHDDLPCM 127
QI ++ Y++ + G KR P++ A +L V++ A ALE+ H SLIHDDLP M
Sbjct: 37 QIRSALHYALFSGG-KRIRPILVYLAGDLIDVDQGVLDIIAAALELTHCYSLIHDDLPAM 95
Query: 128 DDDPSRRGQPSNHTVYGVDIAILAGDALFPLGFQHIVSHTPPHLVPEPRVLRVIAEIARA 187
D+D RRG+PS H + AIL GD + L + ++ P L+P +V+ + + A
Sbjct: 96 DNDDLRRGKPSCHKAFDEATAILVGDGMQALAIEVLLMRLSP-LLPAAQVVAITQVLVNA 154
Query: 188 VGSTGMAAGQFLDL-EGEPNLV--EFVQEKKFGEMSECSAVCGGFLAGAD---DDEIQS- 240
G +GM +GQ LDL E + V E ++E + + C + A ++I+S
Sbjct: 155 SGISGMVSGQSLDLSELAKSSVTEEQLREIHLLKTGKLILACFEMVLAAQHEVSEQIKSA 214
Query: 241 LRRYGRAVGVLYQVVDDILEAKAQT 265
LR YG+ +G+++Q+ DD L+ A T
Sbjct: 215 LRTYGKHIGLVFQMQDDYLDLYAPT 239
>pdb|3TS7|A Chain A, Crystal Structure Of Farnesyl Diphosphate Synthase (Target
Efi-501951) From Methylococcus Capsulatus
pdb|3TS7|B Chain B, Crystal Structure Of Farnesyl Diphosphate Synthase (Target
Efi-501951) From Methylococcus Capsulatus
Length = 324
Score = 100 bits (249), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 77/209 (36%), Positives = 111/209 (53%), Gaps = 10/209 (4%)
Query: 64 KYPEQIYESMRYSVLAKGTKRAPPVMCVAACELFGVNRIAAFPTACALEMVHAASLIHDD 123
+ PE+++++MRYSVL G KR P++ A + GV ACA+E +H SLIHDD
Sbjct: 33 RMPERLHQAMRYSVLG-GGKRMRPLLTYATGQTIGVAADLLDGPACAVEFIHVYSLIHDD 91
Query: 124 LPCMDDDPSRRGQPSNHTVYGVDIAILAGDALFPLGFQHIVSHTPPHLVPEPRVLRVIAE 183
LP MDDD RRG+P+ H Y AILAGD L L F H+++ P VP + +I
Sbjct: 92 LPAMDDDDLRRGKPTCHKAYDEATAILAGDGLQALAF-HVLAQDPSIAVPAENRIAMIET 150
Query: 184 IARAVGSTGMAAGQFLDLEGE------PNLVEFVQEKKFGEMSECSAVCGGFLA-GADDD 236
+A+A G GM GQ +DL P L E + +K G + S G +
Sbjct: 151 LAKASGPAGMVGGQAIDLASVGKKLDLPGL-ENMHIRKTGALIRASVRLACLARPGLPAE 209
Query: 237 EIQSLRRYGRAVGVLYQVVDDILEAKAQT 265
+ L Y + +G+ +Q+ DDIL+ ++ T
Sbjct: 210 QFDRLDHYAKCIGLAFQIQDDILDEESDT 238
>pdb|3Q1O|A Chain A, Crystal Structure Of Geranyltransferase From Helicobacter
Pylori Complexed With Magnesium And Isoprenyl
Diphosphate
pdb|3Q1O|B Chain B, Crystal Structure Of Geranyltransferase From Helicobacter
Pylori Complexed With Magnesium And Isoprenyl
Diphosphate
pdb|3Q1O|C Chain C, Crystal Structure Of Geranyltransferase From Helicobacter
Pylori Complexed With Magnesium And Isoprenyl
Diphosphate
pdb|3Q1O|D Chain D, Crystal Structure Of Geranyltransferase From Helicobacter
Pylori Complexed With Magnesium And Isoprenyl
Diphosphate
Length = 310
Score = 99.4 bits (246), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 75/241 (31%), Positives = 117/241 (48%), Gaps = 28/241 (11%)
Query: 65 YPEQIYESMRYSVLAKGTKRAPPVMCVAACELFGV-----NRIAAFPTACALEMVHAASL 119
Y E+ + M VL G + P + C L G + F A ++E +H SL
Sbjct: 42 YLEKAFFEM---VLNGGKRFRPKLFLAVLCALVGQKDYSNQQTEYFKIALSIECLHTYSL 98
Query: 120 IHDDLPCMDDDPSRRGQPSNHTVYGVDIAILAGDALFPLGFQHIVSHTPPHLVPEPRVLR 179
IHDDLPCMD+ RR P+ H Y A+L GDAL F+ ++S+ L+ ++
Sbjct: 99 IHDDLPCMDNAALRRNHPTLHAKYDETTAVLIGDALNTYSFE-LLSNA---LLESHIIVE 154
Query: 180 VIAEIARAVGSTGMAAGQFLD--LEGEP-NL--VEFVQEKKFGEMSECSAVCGGFLAGAD 234
+I ++ G GM GQ LD E P NL + F+ E K ++ S + G +G
Sbjct: 155 LIKILSANGGIKGMILGQALDCYFENTPLNLEQLTFLHEHKTAKLISASLIMGLVASGIK 214
Query: 235 DDEI-QSLRRYGRAVGVLYQVVDDILEAKAQTPRDEEXXXXXX------XSYVAFYGVEK 287
D+E+ + L+ +G +G+ +QV+DDI++ +DEE S+V G+E+
Sbjct: 215 DEELFKWLQAFGLKMGLCFQVLDDIID----VTQDEEESGKTTHLDSAKNSFVNLLGLER 270
Query: 288 A 288
A
Sbjct: 271 A 271
>pdb|2FOR|A Chain A, Crystal Structure Of The Shigella Flexneri Farnesyl
Pyrophosphate Synthase Complex With An Isopentenyl
Pyrophosphate
pdb|2FOR|B Chain B, Crystal Structure Of The Shigella Flexneri Farnesyl
Pyrophosphate Synthase Complex With An Isopentenyl
Pyrophosphate
Length = 323
Score = 99.0 bits (245), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 90/266 (33%), Positives = 125/266 (46%), Gaps = 16/266 (6%)
Query: 36 RSTQFDLKTYWTTLITEIDQNLEKAITVKYPEQ---IYESMRYSVLAKGTKRAPPVMCVA 92
+S D + + +Q L + I P Q + E+M+Y L G KR P + A
Sbjct: 21 QSNAMDFPQQLEACVKQANQALSRFI-APLPFQNTPVVETMQYGALLGG-KRLRPFLVYA 78
Query: 93 ACELFGVNRIAAFPTACALEMVHAASLIHDDLPCMDDDPSRRGQPSNHTVYGVDIAILAG 152
+FGV+ A A+E +HA SLIHDDLP MDDD RRG P+ H +G AILAG
Sbjct: 79 TGHMFGVSTNTLDAPAAAVECIHAYSLIHDDLPAMDDDDLRRGLPTCHVKFGEANAILAG 138
Query: 153 DALFPLGFQHIVSHTPPHLVPEPRVLRVIAEIARAVGSTGMAAGQFLDLEGEPNLV---- 208
DAL L F + P + R+ +I+E+A A G GM GQ LDL+ E V
Sbjct: 139 DALQTLAFSILSDANMPEVSDRDRI-SMISELASASGIAGMCGGQALDLDAEGKHVPLDA 197
Query: 209 -EFVQEKKFGEMSECSAVCGGFLAGADDDE-IQSLRRYGRAVGVLYQVVDDILEAKAQT- 265
E + K G + + G AG + L +Y ++G+ +QV DDIL+ T
Sbjct: 198 LERIHRHKTGALIRAAVRLGALSAGDKGRRALPVLDKYAESIGLAFQVQDDILDVVGDTA 257
Query: 266 ---PRDEEXXXXXXXSYVAFYGVEKA 288
R +Y A G+E+A
Sbjct: 258 TLGKRQGADQQLGKSTYPALLGLEQA 283
>pdb|3LLW|A Chain A, Crystal Structure Of Geranyltransferase From Helicobacter
Pylori 26695
pdb|3LLW|B Chain B, Crystal Structure Of Geranyltransferase From Helicobacter
Pylori 26695
pdb|3LLW|C Chain C, Crystal Structure Of Geranyltransferase From Helicobacter
Pylori 26695
pdb|3LLW|D Chain D, Crystal Structure Of Geranyltransferase From Helicobacter
Pylori 26695
Length = 311
Score = 99.0 bits (245), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 75/241 (31%), Positives = 117/241 (48%), Gaps = 28/241 (11%)
Query: 65 YPEQIYESMRYSVLAKGTKRAPPVMCVAACELFGV-----NRIAAFPTACALEMVHAASL 119
Y E+ + M VL G + P + C L G + F A ++E +H SL
Sbjct: 35 YLEKAFFEM---VLNGGKRFRPKLFLAVLCALVGQKDYSNQQTEYFKIALSIECLHTYSL 91
Query: 120 IHDDLPCMDDDPSRRGQPSNHTVYGVDIAILAGDALFPLGFQHIVSHTPPHLVPEPRVLR 179
IHDDLPCMD+ RR P+ H Y A+L GDAL F+ ++S+ L+ ++
Sbjct: 92 IHDDLPCMDNAALRRNHPTLHAKYDETTAVLIGDALNTYSFE-LLSNA---LLESHIIVE 147
Query: 180 VIAEIARAVGSTGMAAGQFLD--LEGEP-NL--VEFVQEKKFGEMSECSAVCGGFLAGAD 234
+I ++ G GM GQ LD E P NL + F+ E K ++ S + G +G
Sbjct: 148 LIKILSANGGIKGMILGQALDCYFENTPLNLEQLTFLHEHKTAKLISASLIMGLVASGIK 207
Query: 235 DDEI-QSLRRYGRAVGVLYQVVDDILEAKAQTPRDEEXXXXXX------XSYVAFYGVEK 287
D+E+ + L+ +G +G+ +QV+DDI++ +DEE S+V G+E+
Sbjct: 208 DEELFKWLQAFGLKMGLCFQVLDDIIDV----TQDEEESGKTTHLDSAKNSFVNLLGLER 263
Query: 288 A 288
A
Sbjct: 264 A 264
>pdb|1RQJ|A Chain A, Active Conformation Of Farnesyl Pyrophosphate Synthase
Bound To Isopentyl Pyrophosphate And Risedronate
pdb|1RQJ|B Chain B, Active Conformation Of Farnesyl Pyrophosphate Synthase
Bound To Isopentyl Pyrophosphate And Risedronate
Length = 299
Score = 98.6 bits (244), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 83/230 (36%), Positives = 113/230 (49%), Gaps = 12/230 (5%)
Query: 69 IYESMRYSVLAKGTKRAPPVMCVAACELFGVNRIAAFPTACALEMVHAASLIHDDLPCMD 128
+ E+M+Y L G KR P + A +FGV+ A A+E +HA SLIHDDLP MD
Sbjct: 32 VVETMQYGALL-GGKRLRPFLVYATGHMFGVSTNTLDAPAAAVECIHAYSLIHDDLPAMD 90
Query: 129 DDPSRRGQPSNHTVYGVDIAILAGDALFPLGFQHIVSHTPPHLVPEPRVLRVIAEIARAV 188
DD RRG P+ H +G AILAGDAL L F + P + R+ +I+E+A A
Sbjct: 91 DDDLRRGLPTCHVKFGEANAILAGDALQTLAFSILSDADMPEVSDRDRI-SMISELASAS 149
Query: 189 GSTGMAAGQFLDLEGEPNLV-----EFVQEKKFGEMSECSAVCGGFLAGADDDE-IQSLR 242
G GM GQ LDL+ E V E + K G + + G AG + L
Sbjct: 150 GIAGMCGGQALDLDAEGKHVPLDALERIHRHKTGALIRAAVRLGALSAGDKGRRALPVLD 209
Query: 243 RYGRAVGVLYQVVDDILEAKAQT----PRDEEXXXXXXXSYVAFYGVEKA 288
+Y ++G+ +QV DDIL+ T R +Y A G+E+A
Sbjct: 210 KYAESIGLAFQVQDDILDVVGDTATLGKRQGADQQLGKSTYPALLGLEQA 259
>pdb|1RQI|A Chain A, Active Conformation Of Farnesyl Pyrophosphate Synthase
Bound To Isopentyl Pyrophosphate And Dimethylallyl S-
Thiolodiphosphate
pdb|1RQI|B Chain B, Active Conformation Of Farnesyl Pyrophosphate Synthase
Bound To Isopentyl Pyrophosphate And Dimethylallyl S-
Thiolodiphosphate
Length = 300
Score = 98.2 bits (243), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 83/230 (36%), Positives = 113/230 (49%), Gaps = 12/230 (5%)
Query: 69 IYESMRYSVLAKGTKRAPPVMCVAACELFGVNRIAAFPTACALEMVHAASLIHDDLPCMD 128
+ E+M+Y L G KR P + A +FGV+ A A+E +HA SLIHDDLP MD
Sbjct: 33 VVETMQYGALL-GGKRLRPFLVYATGHMFGVSTNTLDAPAAAVECIHAYSLIHDDLPAMD 91
Query: 129 DDPSRRGQPSNHTVYGVDIAILAGDALFPLGFQHIVSHTPPHLVPEPRVLRVIAEIARAV 188
DD RRG P+ H +G AILAGDAL L F + P + R+ +I+E+A A
Sbjct: 92 DDDLRRGLPTCHVKFGEANAILAGDALQTLAFSILSDADMPEVSDRDRI-SMISELASAS 150
Query: 189 GSTGMAAGQFLDLEGEPNLV-----EFVQEKKFGEMSECSAVCGGFLAGADDDE-IQSLR 242
G GM GQ LDL+ E V E + K G + + G AG + L
Sbjct: 151 GIAGMCGGQALDLDAEGKHVPLDALERIHRHKTGALIRAAVRLGALSAGDKGRRALPVLD 210
Query: 243 RYGRAVGVLYQVVDDILEAKAQT----PRDEEXXXXXXXSYVAFYGVEKA 288
+Y ++G+ +QV DDIL+ T R +Y A G+E+A
Sbjct: 211 KYAESIGLAFQVQDDILDVVGDTATLGKRQGADQQLGKSTYPALLGLEQA 260
>pdb|2H8O|A Chain A, The 1.6a Crystal Structure Of The Geranyltransferase From
Agrobacterium Tumefaciens
Length = 335
Score = 90.1 bits (222), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 81/210 (38%), Positives = 113/210 (53%), Gaps = 8/210 (3%)
Query: 59 KAITVKYPEQIYESMRYSVLAKGTKRAPPVMCVAACELFGVNRIAAFPTACALEMVHAAS 118
+A + P+ + E+MR+ VL G KR P + + + L G + A ALE +H S
Sbjct: 63 RADEITRPQNLLEAMRHGVL-NGGKRLRPFLVIESVALLGGDAEAGLHVGAALECLHCYS 121
Query: 119 LIHDDLPCMDDDPSRRGQPSNHTVYGVDIAILAGDALFPLGFQHIVSHTPPHLVPEPRVL 178
L+HDDLP MDDD RRGQP+ H + AILAGD+L L F I S P L E +
Sbjct: 122 LVHDDLPAMDDDDLRRGQPTVHRKFDEATAILAGDSLLTLAFDIIASDDNP-LAAERKAA 180
Query: 179 RVIAEIARAVGSTGMAAGQFLDLEGEPNL-----VEFVQEKKFGEMSECSAVCGGFLAGA 233
VI+ +ARA G GMA GQ LDL E + +Q K G + + G +AG+
Sbjct: 181 LVIS-LARAAGIGGMAGGQALDLAAEKKAPDEDGIITLQAMKTGALLRFACEAGAIIAGS 239
Query: 234 DDDEIQSLRRYGRAVGVLYQVVDDILEAKA 263
+ E Q LR +G +G+ +Q+ DD+L+ A
Sbjct: 240 NQAERQRLRLFGEKIGLSFQLADDLLDLTA 269
>pdb|3MZV|A Chain A, Crystal Structure Of A Decaprenyl Diphosphate Synthase
From Rhodobacter Capsulatus
pdb|3MZV|B Chain B, Crystal Structure Of A Decaprenyl Diphosphate Synthase
From Rhodobacter Capsulatus
Length = 341
Score = 88.6 bits (218), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 58/190 (30%), Positives = 96/190 (50%), Gaps = 19/190 (10%)
Query: 77 VLAKGTKRAPPVMCVAACELFGVNRIAAFPTACALEMVHAASLIHDDLPCMDDDPSRRGQ 136
++ G KR P++ +AA L G A +E +H A+L+HDD +D+ RRG+
Sbjct: 48 LIEAGGKRLRPMLTLAAARLVGYGGPFHVHLAATVEFIHTATLLHDD--VVDESRQRRGR 105
Query: 137 PSNHTVYGVDIAILAGDALFPLGFQHIVSHTPPHLVPEPRVLRVIAEIARAVGSTGMAAG 196
P+ + ++ ++L GD LF FQ L+ + +RV+ +A A S +A G
Sbjct: 106 PTANLLWDNKSSVLVGDYLFARSFQ---------LMTDTGNMRVMEILANA--SAVIAEG 154
Query: 197 QFLDLEGEPNLVEF------VQEKKFGEMSECSAVCGGFLAGADDDEIQSLRRYGRAVGV 250
+ L L NL V K + + GG + GA +D++Q+L YG A+G+
Sbjct: 155 EVLQLTAAQNLATTEDIYLRVIRGKTAALFSAATEVGGIIGGAPEDQVQALFDYGDALGI 214
Query: 251 LYQVVDDILE 260
+Q+VDD+L+
Sbjct: 215 AFQIVDDLLD 224
>pdb|3NPK|A Chain A, The Crystal Structure Of Geranyltranstransferase From
Campylobacter Jejuni
pdb|3NPK|B Chain B, The Crystal Structure Of Geranyltranstransferase From
Campylobacter Jejuni
Length = 291
Score = 85.9 bits (211), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 59/193 (30%), Positives = 92/193 (47%), Gaps = 11/193 (5%)
Query: 104 AFPTACALEMVHAASLIHDDLPCMDDDPSRRGQPSNHTVYGVDIAILAGDALFPLGFQHI 163
A A ALE +H SLIHDDLP D+ RRG P+ H Y AIL GDAL F +
Sbjct: 62 ALDVALALEFIHTYSLIHDDLPAXDNADFRRGIPTLHKSYDETTAILVGDALNTEAFL-V 120
Query: 164 VSHTPPHLVPEPRVLRVIAEIARAVGSTGMAAGQ-----FLDLEGEPNLVEFVQEKKFGE 218
+SH HL E ++ ++I +A G G GQ F D N +EF+ K
Sbjct: 121 LSH--AHLKDEIKI-KLIKTLAFNAGLNGXVIGQAIDCFFEDKRLSLNELEFLHTHKTAR 177
Query: 219 MSECSAVCGGFLAGADDDEIQSLRRYGRAVGVLYQVVDDILEAKAQTPRDEE--XXXXXX 276
+ + G + +++E + + G +G+++Q+ DDI++ + +
Sbjct: 178 LIAAALKXGCEICELNNEESNQIYKLGLKLGLIFQINDDIIDVTTSQEQSGKPTNNDIHK 237
Query: 277 XSYVAFYGVEKAM 289
S+V G+E+A+
Sbjct: 238 NSFVNLLGLEQAI 250
>pdb|2FTZ|A Chain A, Crystal Structure Of Geranyltranstransferase (Ec 2.5.1.10)
(Tm0161) From Thermotoga Maritima At 1.90 A Resolution
Length = 284
Score = 84.7 bits (208), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 64/195 (32%), Positives = 87/195 (44%), Gaps = 22/195 (11%)
Query: 71 ESMRYSVLAKGTKRAPPVMCVAACELFGVNRIAAFPTACALEMVHAASLIHDDLPCMDDD 130
E+M YS G R P++ + E GV A A+E+ H ASLIHDDLP +D+
Sbjct: 36 EAMLYSATVGGX-RIRPLLVLTLGEDLGVEEEXLLDVAVAVELFHTASLIHDDLPPIDNA 94
Query: 131 PSRRGQPSNHTVYGVDIAILAGDALFPLGFQHIVSHTPPHLVPEPRVLRVIAEIARAVGS 190
RRG PS H YG DIA+LAGD LF L F I + + +E A
Sbjct: 95 DFRRGXPSCHRTYGEDIALLAGDGLFFLAFSQI------SXIGNSXIFEEFSETAYX--- 145
Query: 191 TGMAAGQFLDLEGEPNLVEFVQEKKFGEMSECSAVCGGF-------LAGADDDEIQSLRR 243
+ G+ +D+E E +E QE + + F L G D + L
Sbjct: 146 --LLLGEAMDVEFERRXMEVSQEMVERMYAFXTGALFAFCFSAPFILXGXDHTXMXLL-- 201
Query: 244 YGRAVGVLYQVVDDI 258
G GV +Q+ DD+
Sbjct: 202 -GEXFGVAFQIYDDL 215
>pdb|3OYR|A Chain A, Crystal Structure Of Polyprenyl Synthase From Caulobacter
Crescentus Cb15 Complexed With Calcium And Isoprenyl
Diphosphate
pdb|3OYR|B Chain B, Crystal Structure Of Polyprenyl Synthase From Caulobacter
Crescentus Cb15 Complexed With Calcium And Isoprenyl
Diphosphate
Length = 345
Score = 84.3 bits (207), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 64/195 (32%), Positives = 96/195 (49%), Gaps = 29/195 (14%)
Query: 77 VLAKGTKRAPPVMCVAACELFGVNRIAAFPTACALEMVHAASLIHDDLPCMDDDPSRRGQ 136
++A G KR P+M VAA L G + A A+E +H A+L+HDD +D RRG+
Sbjct: 60 LIAAGGKRLRPLMTVAAARLAGADNDHFQKLAAAVEFIHTATLLHDD--VVDGSQLRRGK 117
Query: 137 PSNHTVYGVDIAILAGDALFPLGFQHIV-SHTPPHLVPEPRVLRVIAEIARAVGSTGMAA 195
+ H ++G ++L GD LF F+ +V +++ L R RVIAE
Sbjct: 118 VAAHLIWGGAQSVLVGDFLFARAFELMVETNSMKALEILARASRVIAE------------ 165
Query: 196 GQFLDLEGEPNL-------VEFVQEKK---FGEMSECSAVCGGFLAGADDDEIQSLRRYG 245
G+ L L +L +E +Q K F SE AV AG D + ++LR YG
Sbjct: 166 GEVLQLMRSHDLNLSQAVYLEIIQAKTAELFAAASEAGAVS----AGVDVAKSEALRDYG 221
Query: 246 RAVGVLYQVVDDILE 260
+G+ +Q+ DD L+
Sbjct: 222 LNLGLAFQLADDALD 236
>pdb|3NF2|A Chain A, Crystal Structure Of Polyprenyl Synthetase From
Streptomyces Coelicolor A3(2)
Length = 352
Score = 82.4 bits (202), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 61/185 (32%), Positives = 90/185 (48%), Gaps = 16/185 (8%)
Query: 81 GTKRAPPVMCVAACELFGVNRIAAFPTACALEMVHAASLIHDDLPCMDDDPSRRGQPSNH 140
G K P + V + E+ G P A A+E+VH SL+HDDL MD D RR + +
Sbjct: 53 GGKAVRPALAVLSAEVTGAAPEVGVPGAVAVELVHNFSLLHDDL--MDGDEQRRHRDTVW 110
Query: 141 TVYGVDIAILAGDALFPLGFQHIVSHTPPHLVPEPRVLRVIAEIARAVGSTGMAAGQFLD 200
V+G AIL GDALF L + ++ V R R + + +R+ + GQ D
Sbjct: 111 KVHGPAQAILVGDALFALANEVLLELGT---VEAGRATRRLTKASRS-----LIDGQAQD 162
Query: 201 LEGEPNLVEFVQE------KKFGEMSECSAVCGGFLAGADDDEIQSLRRYGRAVGVLYQV 254
+ E V+E K G + C++ G L GAD+ +L +YG +G+ +Q
Sbjct: 163 ISYEHRDRVSVEECLEMEGNKTGALLACASSIGAVLGGADERTADTLEKYGYHLGLAFQA 222
Query: 255 VDDIL 259
VDD+L
Sbjct: 223 VDDLL 227
>pdb|3IPI|A Chain A, Crystal Structure Of A Geranyltranstransferase From The
Methanosarcina Mazei
Length = 295
Score = 74.7 bits (182), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 59/190 (31%), Positives = 87/190 (45%), Gaps = 21/190 (11%)
Query: 77 VLAKGTKRAPPVMCVAACELFGVNRIAAFPTACALEMVHAASLIHDDLPCMDDDPSRRGQ 136
V G KR P++ + E+ + + A A+E H+ASLIHDDL +D RR
Sbjct: 37 VCHSGGKRIRPIILLLVSEICSGSYSRSLNAALAVEXXHSASLIHDDL--LDQGLVRRNL 94
Query: 137 PSNHTVYGVDIAILAGDALFPLGFQHIVSHTPPHLVPEPRVLRVIAEIARAVGSTGMAAG 196
PS +G A+L GD L I P +VI + +A A G
Sbjct: 95 PSAPEKFGPSGALLCGDYLIAKSIAFI----------SPYGEKVIQDFGKA--GXDXAEG 142
Query: 197 QFLDLE------GEPNLVEFVQEKKFGEMSECSAVCGGFLAGADDDEIQSLRRYGRAVGV 250
+ LDL+ GE + + + KK + SA G + GA+++ + +G A+G
Sbjct: 143 EVLDLKLEDESFGENDYFKCIY-KKTASLFAISASIGAYTGGAEEELAERFSHFGNALGT 201
Query: 251 LYQVVDDILE 260
YQ+VDDILE
Sbjct: 202 AYQIVDDILE 211
>pdb|3AQB|B Chain B, M. Luteus B-P 26 Heterodimeric Hexaprenyl Diphosphate
Synthase In Complex With Magnesium
pdb|3AQB|D Chain D, M. Luteus B-P 26 Heterodimeric Hexaprenyl Diphosphate
Synthase In Complex With Magnesium
pdb|3AQC|B Chain B, M. Luteus B-P 26 Heterodimeric Hexaprenyl Diphosphate
Synthase In Complex With Magnesium And Fpp Analogue
pdb|3AQC|D Chain D, M. Luteus B-P 26 Heterodimeric Hexaprenyl Diphosphate
Synthase In Complex With Magnesium And Fpp Analogue
Length = 325
Score = 74.7 bits (182), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 57/226 (25%), Positives = 99/226 (43%), Gaps = 25/226 (11%)
Query: 43 KTYWTTLITEIDQNLEKAITVKYPEQIYESMRYSVLAKGTKRAPPVMCVAACELFGVNRI 102
K + I E+++ L + I + + + +L+ G KR P+ + + L +
Sbjct: 7 KAFLNPYIIEVEKRLYECI--QSDSETINKAAHHILSSGGKRVRPMFVLLSGFLNDTQKD 64
Query: 103 AAFPTACALEMVHAASLIHDDLPCMDDDPSRRGQPSNHTVYGVDIAILAGDALFPLGFQH 162
TA +LE+VH ASL+HDD +D+ RRG S H + D AI G L Q+
Sbjct: 65 DLIRTAVSLELVHMASLVHDDY--IDNSDMRRGNTSVHIAFDKDTAIRTGHFLLARALQN 122
Query: 163 I--VSHTPPHLVPEPRVLRVIAEIARAVGSTGMAAGQFLDLEGEPNL-VEFVQ-----EK 214
I ++++ H + +L V G+F + N V F +
Sbjct: 123 IATINNSKFHQIFSKTILEV-------------CFGEFDQMADRFNYPVSFTAYLRRINR 169
Query: 215 KFGEMSECSAVCGGFLAGADDDEIQSLRRYGRAVGVLYQVVDDILE 260
K + E S G + D+ ++++G +G+ YQ++DDIL+
Sbjct: 170 KTAILIEASCHLGALSSQLDEQSTYHIKQFGHCIGMSYQIIDDILD 215
>pdb|3M0G|A Chain A, Crystal Structure Of Putative Farnesyl Diphosphate
Synthase From Rhodobacter Capsulatus
pdb|3M0G|B Chain B, Crystal Structure Of Putative Farnesyl Diphosphate
Synthase From Rhodobacter Capsulatus
Length = 297
Score = 68.6 bits (166), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 67/189 (35%), Positives = 99/189 (52%), Gaps = 13/189 (6%)
Query: 79 AKGTKRAPPVMCVAACELFGVNRIAAFPTACALEMVHAASLIHDDLPCMDDDPSRRGQPS 138
A+G KR + + + + G++ A P A A+E +HA SL+HDD PC D+D RRG P+
Sbjct: 38 AQGGKRLRAFLAIESAAIHGISXAQAXPAALAVEALHAYSLVHDDXPCXDNDDLRRGLPT 97
Query: 139 NHTVYGVDIAILAGDALFPLGFQHIVSHTPPHLVPEPRVLRVIAEIARAVGSTGMAAGQF 198
H + A+LAGDAL L F+ T P L + ++A +A+A G+ G GQ
Sbjct: 98 VHKKWDDATAVLAGDALQTLAFELC---TDPVLGSAENRVALVAALAQASGAEGXVYGQA 154
Query: 199 LDLEGEPNLVEF-------VQEKKFGEMSECSAVCGGFLAGADDDEIQSLRRYGRAVGVL 251
LD+ E V +Q K G + +A G LAGAD + + Y A+G+
Sbjct: 155 LDIAAETAAVPLTLDEIIRLQAGKTGALISFAAQAGAILAGADRGPLTA---YATALGLA 211
Query: 252 YQVVDDILE 260
+Q+ DDIL+
Sbjct: 212 FQIADDILD 220
>pdb|3RMG|A Chain A, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Bacteroides Thetaiotaomicron
pdb|3RMG|B Chain B, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Bacteroides Thetaiotaomicron
Length = 334
Score = 67.8 bits (164), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 53/201 (26%), Positives = 88/201 (43%), Gaps = 25/201 (12%)
Query: 69 IYESMRYSVLAKGTKRAPPVMCVAACELFGVNRIAAFPTACALEMVHAASLIHDDLPCMD 128
+ +S+ + + K P++ + L+G A A +LE++H ASL+HDD+ +D
Sbjct: 34 LLDSVITHIRKRNGKMMRPILVLLVARLYGAVTPATLHAAVSLELLHTASLVHDDV--VD 91
Query: 129 DDPSRRGQPSNHTVYGVDIAILAGDALFPLGFQHIVSHTPPHLVPEPRVLRVIAEIARAV 188
+ RRGQ S + ++ +++LAGD L H T + EI R V
Sbjct: 92 ESTERRGQLSVNAIFNNKVSVLAGDYLLATSLVH-AEQTNNY------------EIIRLV 138
Query: 189 GSTG--MAAGQFLDLEGEPNLVEFVQE-------KKFGEMSECSAVCGGFLAGADDDEIQ 239
S G +A G+ L L N F +E KK + A ++E+
Sbjct: 139 SSLGQKLAEGELLQLSNVSNH-SFSEEVYFDVIRKKTAALFAACAEAAALSVQVGEEEVA 197
Query: 240 SLRRYGRAVGVLYQVVDDILE 260
R G +G+ +Q+ DDI +
Sbjct: 198 FARLLGEYIGICFQIKDDIFD 218
>pdb|3LMD|A Chain A, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Corynebacterium Glutamicum Atcc 13032
pdb|3Q2Q|A Chain A, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Corynebacterium Glutamicum Complexed With Calcium
And Isoprenyl Diphosphate
Length = 360
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 68/260 (26%), Positives = 113/260 (43%), Gaps = 29/260 (11%)
Query: 18 RKFPVRCSSL-----PVSAASQLRSTQFDLKTYWTTLITEIDQNLEKAITVKYPEQIYES 72
R P R L + ASQ+ +L + ++++ L ++ E
Sbjct: 7 RTVPTRSHGLGKEGVSTTGASQVEFGDPELTARINDAMVQVEELLHTELS--SGEDFLVD 64
Query: 73 MRYSVLAKGTKRAPPVMCVAACELFGVNRIA--AFPTACALEMVHAASLIHDDLPCMDDD 130
+ + G KR P+ + A E FG ++ A +E+ H A+L HDD MD+
Sbjct: 65 IVMHLTRAGGKRFRPMFALLASE-FGEKPLSENVIKAAVVVEITHLATLYHDD--VMDEA 121
Query: 131 PSRRGQPSNHTVYGVDIAILAGDALFPLGFQHIVSHTPPHLVPEPRVLRVIAEIARAVGS 190
RRG PS + + +AILAGD L S L + +A A G
Sbjct: 122 SMRRGVPSANARWDNSVAILAGDILLAH-----ASGLMSQLGTD-----TVAHFAETFGE 171
Query: 191 TGMAAGQFLDLEG--EPNLVEF---VQEKKFGEMSECSAVCGGFLAGADDDEIQSLRRYG 245
+ GQ + G + + +E V +K G + + G AGA + I +L+ +G
Sbjct: 172 --LVTGQMRETVGPRDTDPIEHYTNVIREKTGVLIASAGYLGAMHAGAAPEHIDALKNFG 229
Query: 246 RAVGVLYQVVDDILEAKAQT 265
AVG+++Q+VDDI++ ++T
Sbjct: 230 AAVGMIFQIVDDIIDIFSET 249
>pdb|3PKO|A Chain A, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Lactobacillus Brevis Atcc 367 Complexed With
Citrate
pdb|3PKO|B Chain B, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Lactobacillus Brevis Atcc 367 Complexed With
Citrate
Length = 334
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 52/171 (30%), Positives = 77/171 (45%), Gaps = 22/171 (12%)
Query: 108 ACALEMVHAASLIHDDLPCMDDDPSRRGQPSNHTVYGVDIAILAGDALFPLGFQHIVSHT 167
A A+E++H +LIHDD +DD P+RRG + YG AI AGD +F + F ++ T
Sbjct: 82 AAAIEILHVGTLIHDD--VIDDSPTRRGVRTIQMTYGQRNAIYAGDFMFTVYFDQVLKST 139
Query: 168 PP------HLVPEPRVLRVIAEIARAVGSTGMAAGQFLDLEGEPNLVEFVQE--KKFGEM 219
H+ R+L+ G L+ + L ++ E K E+
Sbjct: 140 TDRSLIQNHIDAMHRILQ------------GELHQMDLNYREDITLDAYLNEIAGKTAEL 187
Query: 220 SECSAVCGGFLAGADDDEIQSLRRYGRAVGVLYQVVDDILEAKAQTPRDEE 270
S G LAGA I R G A+G YQ++DDIL+ R ++
Sbjct: 188 FALSCYQGAQLAGAPQSVIDRTRDIGIAIGCAYQMLDDILDYAGDPKRTQK 238
>pdb|3N3D|A Chain A, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Lactobacillus Brevis Atcc 367
pdb|3N3D|B Chain B, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Lactobacillus Brevis Atcc 367
Length = 335
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 52/171 (30%), Positives = 77/171 (45%), Gaps = 22/171 (12%)
Query: 108 ACALEMVHAASLIHDDLPCMDDDPSRRGQPSNHTVYGVDIAILAGDALFPLGFQHIVSHT 167
A A+E++H +LIHDD +DD P+RRG + YG AI AGD +F + F ++ T
Sbjct: 75 AAAIEILHVGTLIHDD--VIDDSPTRRGVRTIQMTYGQRNAIYAGDFMFTVYFDQVLKST 132
Query: 168 PP------HLVPEPRVLRVIAEIARAVGSTGMAAGQFLDLEGEPNLVEFVQE--KKFGEM 219
H+ R+L+ G L+ + L ++ E K E+
Sbjct: 133 TDRSLIQNHIDAMHRILQ------------GELHQMDLNYREDITLDAYLNEIAGKTAEL 180
Query: 220 SECSAVCGGFLAGADDDEIQSLRRYGRAVGVLYQVVDDILEAKAQTPRDEE 270
S G LAGA I R G A+G YQ++DDIL+ R ++
Sbjct: 181 FALSCYQGAQLAGAPQSVIDRTRDIGIAIGCAYQMLDDILDYAGDPKRTQK 231
>pdb|4DHD|A Chain A, Crystal Structure Of Isoprenoid Synthase A3msh1 (Target
Efi-501992) From Pyrobaculum Calidifontis
pdb|4GP1|A Chain A, Crystal Structure Of Isoprenoid Synthase A3msh1 (Target
Efi-501992) From Pyrobaculum Calidifontis Complexed With
Dmapp
pdb|4GP2|A Chain A, Crystal Structure Of Isoprenoid Synthase A3msh1 (Target
Efi-501992) From Pyrobaculum Calidifontis Complexed With
Dmapp And Magnesium
pdb|4GP2|B Chain B, Crystal Structure Of Isoprenoid Synthase A3msh1 (Target
Efi-501992) From Pyrobaculum Calidifontis Complexed With
Dmapp And Magnesium
Length = 358
Score = 65.1 bits (157), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 61/232 (26%), Positives = 103/232 (44%), Gaps = 39/232 (16%)
Query: 51 TEIDQNLEKAITVKYPEQIYESMRYSVLAKGTKRAPPVMCVAACELFGVNRIAAFPTACA 110
E+++ L + +++ E E++ Y V G KR P++ +AA E A P A
Sbjct: 15 AEVEKALVRYLSIGLAEDFREAVLYQV-KTGGKRLRPLLTLAAAEAVSGQWRPALPAAAI 73
Query: 111 LEMVHAASLIHDDLPCMDDDPSRRGQPSNHTVYGVDIAILAGDALFPLGFQHIVSHTP-P 169
+E++H SLI+DD+ +D RRG P+ +G + AIL G + + V TP P
Sbjct: 74 VELIHNYSLIYDDI--IDRGDVRRGLPTVRKAFGDNAAILVG-IWYREAIEEAVLDTPKP 130
Query: 170 HLVPEPRVLRVIAEIARAVGSTGMAAGQFLDL------EGEPNLVEFVQEK--------- 214
L + +AE+ +A+ G+ LD+ +P FVQ +
Sbjct: 131 TLFAKE-----VAEVIKAIDE-----GERLDILFEAAGRSDPY---FVQARWREVTLDDY 177
Query: 215 ------KFGEMSECSAVCGGFLAGADDDEIQSLRRYGRAVGVLYQVVDDILE 260
K G + +A G D ++ +G A GV +Q++DD+L+
Sbjct: 178 IKMVSLKTGALIAAAAKWGVLSVSDDRGLAEAAWNFGMAAGVAFQIIDDVLD 229
>pdb|1VG7|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima
F132aL128AI123AD62A MUTANT
Length = 299
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 56/220 (25%), Positives = 97/220 (44%), Gaps = 33/220 (15%)
Query: 50 ITEIDQNLEKAITVKYPEQIYESM---------RYSVLAKGTKRAPPVMCVAACELFGVN 100
+ ++ + +E+ ++ +PEQI + + R S+L+ + V E
Sbjct: 13 LEKVKERIEQILSQFFPEQIMKDLPLYGKMLRVRLSILSFKNR------GVEIGE----- 61
Query: 101 RIAAFPTACALEMVHAASLIHDDLPCMDDDPSRRGQPSNHTVYGVDIAILAGDALFPLGF 160
AA + ALE+VH ASL+HDD +D RRG+ + + +YG A+ AGD + F
Sbjct: 62 --AAISSLAALELVHLASLLHDD--VIDGARFRRGKETINFMYGDKAAVAAGDLVLVSAF 117
Query: 161 QHIVSHTPPHLVPEPRVLRVIAEIARAVGSTGMAAGQFLDLEGEPNLVEFVQEKKFGEMS 220
H V + L VI +++ A ++ + + E +VE FG
Sbjct: 118 -HTVEEAGNNKARRA-ALNVIGKMSEAELIEQLSRYKPITKEEYLRIVEGKSGALFGLAL 175
Query: 221 ECSAVCGGFLAGADDDEIQSLRRYGRAVGVLYQVVDDILE 260
+ A+ G L + L G +G +YQ+ DDI++
Sbjct: 176 QLPALLEGELG-------EDLYNLGVTIGTIYQMFDDIMD 208
>pdb|3APZ|A Chain A, Apo Form Of Arabidopsis MediumLONG-Chain Length Prenyl
Pyrophosphate Synthase
pdb|3APZ|B Chain B, Apo Form Of Arabidopsis MediumLONG-Chain Length Prenyl
Pyrophosphate Synthase
Length = 348
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 75/155 (48%), Gaps = 19/155 (12%)
Query: 112 EMVHAASLIHDDLPCMDDDPSRRGQPSNHTVYGVDIAILAGDALFPLGFQHIVSHTPPHL 171
EM+H ASL+HDD+ +DD +RRG S + V G +++LAGD L + +
Sbjct: 97 EMIHVASLLHDDV--LDDADTRRGVGSLNVVMGNKMSVLAGDFLLSRACGALAALKNTE- 153
Query: 172 VPEPRVLRVIAEIARAVGSTGMAAGQFLDL----EGEPNLVEFVQEKKFGEMSECSAVCG 227
V+A +A AV + G+ +++ E ++ ++Q+ + S S C
Sbjct: 154 --------VVALLATAV--EHLVTGETMEITSSTEQRYSMDYYMQKTYYKTASLISNSCK 203
Query: 228 --GFLAGADDDEIQSLRRYGRAVGVLYQVVDDILE 260
L G + YGR +G+ +Q++DDIL+
Sbjct: 204 AVAVLTGQTAEVAVLAFEYGRNLGLAFQLIDDILD 238
>pdb|3AQ0|A Chain A, Ligand-Bound Form Of Arabidopsis MediumLONG-Chain Length
Prenyl Pyrophosphate Synthase (Surface Polar Residue
Mutant)
pdb|3AQ0|B Chain B, Ligand-Bound Form Of Arabidopsis MediumLONG-Chain Length
Prenyl Pyrophosphate Synthase (Surface Polar Residue
Mutant)
pdb|3AQ0|C Chain C, Ligand-Bound Form Of Arabidopsis MediumLONG-Chain Length
Prenyl Pyrophosphate Synthase (Surface Polar Residue
Mutant)
pdb|3AQ0|D Chain D, Ligand-Bound Form Of Arabidopsis MediumLONG-Chain Length
Prenyl Pyrophosphate Synthase (Surface Polar Residue
Mutant)
pdb|3AQ0|E Chain E, Ligand-Bound Form Of Arabidopsis MediumLONG-Chain Length
Prenyl Pyrophosphate Synthase (Surface Polar Residue
Mutant)
pdb|3AQ0|F Chain F, Ligand-Bound Form Of Arabidopsis MediumLONG-Chain Length
Prenyl Pyrophosphate Synthase (Surface Polar Residue
Mutant)
pdb|3AQ0|G Chain G, Ligand-Bound Form Of Arabidopsis MediumLONG-Chain Length
Prenyl Pyrophosphate Synthase (Surface Polar Residue
Mutant)
pdb|3AQ0|H Chain H, Ligand-Bound Form Of Arabidopsis MediumLONG-Chain Length
Prenyl Pyrophosphate Synthase (Surface Polar Residue
Mutant)
Length = 348
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 74/155 (47%), Gaps = 19/155 (12%)
Query: 112 EMVHAASLIHDDLPCMDDDPSRRGQPSNHTVYGVDIAILAGDALFPLGFQHIVSHTPPHL 171
EM+H ASL+HDD+ +DD +RRG S + V G +++LAGD L + +
Sbjct: 97 EMIHVASLLHDDV--LDDADTRRGVGSLNVVMGNKMSVLAGDFLLSRACGALAALKNTE- 153
Query: 172 VPEPRVLRVIAEIARAVGSTGMAAGQFLDLEGEP----NLVEFVQEKKFGEMSECSAVCG 227
V+A +A AV + G+ +++ ++ ++Q+ + S S C
Sbjct: 154 --------VVALLATAV--EHLVTGETMEITSSTAARYSMDYYMQKTYYKTASLISNSCK 203
Query: 228 --GFLAGADDDEIQSLRRYGRAVGVLYQVVDDILE 260
L G + YGR +G+ +Q++DDIL+
Sbjct: 204 AVAVLTGQTAEVAVLAFEYGRNLGLAFQLIDDILD 238
>pdb|1V4H|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima F52a Mutant
Length = 299
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 55/220 (25%), Positives = 97/220 (44%), Gaps = 33/220 (15%)
Query: 50 ITEIDQNLEKAITVKYPEQIYESM---------RYSVLAKGTKRAPPVMCVAACELFGVN 100
+ ++ + +E+ ++ +PEQI + + R S+L+ + V E
Sbjct: 13 LEKVKERIEQILSQFFPEQIMKDLPLYGKMLRVRLSILSAKNR------GVEIGE----- 61
Query: 101 RIAAFPTACALEMVHAASLIHDDLPCMDDDPSRRGQPSNHTVYGVDIAILAGDALFPLGF 160
A + ALE+VH ASL+HDD +D RRG+ + + +YG A+ AGD + F
Sbjct: 62 --DAISSLAALELVHLASLLHDD--VIDGARFRRGKETINFMYGDKAAVAAGDLVLVSAF 117
Query: 161 QHIVSHTPPHLVPEPRVLRVIAEIARAVGSTGMAAGQFLDLEGEPNLVEFVQEKKFGEMS 220
H V + + L VI +++ A ++ + + E +VE FG
Sbjct: 118 -HTVEEIGNNKLRRA-FLNVIGKMSEAELIEQLSRYKPITKEEYLRIVEGKSGALFGLAL 175
Query: 221 ECSAVCGGFLAGADDDEIQSLRRYGRAVGVLYQVVDDILE 260
+ A+ G L + L G +G +YQ+ DDI++
Sbjct: 176 QLPALLEGELG-------EDLYNLGVTIGTIYQMFDDIMD 208
>pdb|1V4I|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima F132a Mutant
Length = 299
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 45/157 (28%), Positives = 73/157 (46%), Gaps = 11/157 (7%)
Query: 104 AFPTACALEMVHAASLIHDDLPCMDDDPSRRGQPSNHTVYGVDIAILAGDALFPLGFQHI 163
A + ALE+VH ASL+HDD +D RRG+ + + +YG A+ AGD + F H
Sbjct: 63 AISSLAALELVHLASLLHDD--VIDGARFRRGKETINFMYGDKAAVAAGDLVLVSAF-HT 119
Query: 164 VSHTPPHLVPEPRVLRVIAEIARAVGSTGMAAGQFLDLEGEPNLVEFVQEKKFGEMSECS 223
V + + L VI +++ A ++ + + E +VE FG +
Sbjct: 120 VEEIGNNKLRRA-ALNVIGKMSEAELIEQLSRYKPITKEEYLRIVEGKSGALFGLALQLP 178
Query: 224 AVCGGFLAGADDDEIQSLRRYGRAVGVLYQVVDDILE 260
A+ G L + L G +G +YQ+ DDI++
Sbjct: 179 ALLEGELG-------EDLYNLGVTIGTIYQMFDDIMD 208
>pdb|4FP4|A Chain A, Crystal Structure Of Isoprenoid Synthase A3mx09 (Target
Efi-501993) From Pyrobaculum Calidifontis
pdb|4FP4|B Chain B, Crystal Structure Of Isoprenoid Synthase A3mx09 (Target
Efi-501993) From Pyrobaculum Calidifontis
Length = 285
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 74/162 (45%), Gaps = 18/162 (11%)
Query: 105 FPTACALEMVHAASLIHDDLPCMDDDPSRRGQPSNHTVYGVDIAILAGDALFPLGFQHIV 164
A +E++H SL+ DD MD RRG + +YG AI+A D L + V
Sbjct: 71 LEAAAIVELLHVVSLLQDD--VMDQHDQRRGIKTPRAMYGDGRAIVASDWLIAESIKMAV 128
Query: 165 SHTPPHLVPEPRVLRVIAEIARAVGSTGMAAGQFLDLEGEPNLVEFVQEKKFGEMSECSA 224
+ V+ +A++A+ ++ GQ LDLEGE + E K + E +
Sbjct: 129 NLGAD-------VVTYLADVAQR-----LSVGQALDLEGERD---KAAEFKTAPLIEAAL 173
Query: 225 VCGGFLAGADDDEIQSLRRYGRAVGVLYQVVDDILEAKAQTP 266
V + G + I++ ++ G +G+LYQ DD + + P
Sbjct: 174 VMPLVILGRRE-LIETAKKLGTKLGILYQYSDDYSDENVERP 214
>pdb|1WL0|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima R44a Mutant
pdb|1WL0|B Chain B, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima R44a Mutant
Length = 299
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 45/157 (28%), Positives = 73/157 (46%), Gaps = 11/157 (7%)
Query: 104 AFPTACALEMVHAASLIHDDLPCMDDDPSRRGQPSNHTVYGVDIAILAGDALFPLGFQHI 163
A + ALE+VH ASL+HDD +D RRG+ + + +YG A+ AGD + F H
Sbjct: 63 AISSLAALELVHLASLLHDD--VIDGARFRRGKETINFMYGDKAAVAAGDLVLVSAF-HT 119
Query: 164 VSHTPPHLVPEPRVLRVIAEIARAVGSTGMAAGQFLDLEGEPNLVEFVQEKKFGEMSECS 223
V + + L VI +++ A ++ + + E +VE FG +
Sbjct: 120 VEEIGNNKLRRA-FLNVIGKMSEAELIEQLSRYKPITKEEYLRIVEGKSGALFGLALQLP 178
Query: 224 AVCGGFLAGADDDEIQSLRRYGRAVGVLYQVVDDILE 260
A+ G L + L G +G +YQ+ DDI++
Sbjct: 179 ALLEGELG-------EDLYNLGVTIGTIYQMFDDIMD 208
>pdb|1V4E|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima
pdb|1V4E|B Chain B, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima
Length = 299
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 45/157 (28%), Positives = 73/157 (46%), Gaps = 11/157 (7%)
Query: 104 AFPTACALEMVHAASLIHDDLPCMDDDPSRRGQPSNHTVYGVDIAILAGDALFPLGFQHI 163
A + ALE+VH ASL+HDD +D RRG+ + + +YG A+ AGD + F H
Sbjct: 63 AISSLAALELVHLASLLHDD--VIDGARFRRGKETINFMYGDKAAVAAGDLVLVSAF-HT 119
Query: 164 VSHTPPHLVPEPRVLRVIAEIARAVGSTGMAAGQFLDLEGEPNLVEFVQEKKFGEMSECS 223
V + + L VI +++ A ++ + + E +VE FG +
Sbjct: 120 VEEIGNNKLRRA-FLNVIGKMSEAELIEQLSRYKPITKEEYLRIVEGKSGALFGLALQLP 178
Query: 224 AVCGGFLAGADDDEIQSLRRYGRAVGVLYQVVDDILE 260
A+ G L + L G +G +YQ+ DDI++
Sbjct: 179 ALLEGELG-------EDLYNLGVTIGTIYQMFDDIMD 208
>pdb|1WKZ|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima K41a Mutant
pdb|1WKZ|B Chain B, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima K41a Mutant
Length = 299
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 45/157 (28%), Positives = 73/157 (46%), Gaps = 11/157 (7%)
Query: 104 AFPTACALEMVHAASLIHDDLPCMDDDPSRRGQPSNHTVYGVDIAILAGDALFPLGFQHI 163
A + ALE+VH ASL+HDD +D RRG+ + + +YG A+ AGD + F H
Sbjct: 63 AISSLAALELVHLASLLHDD--VIDGARFRRGKETINFMYGDKAAVAAGDLVLVSAF-HT 119
Query: 164 VSHTPPHLVPEPRVLRVIAEIARAVGSTGMAAGQFLDLEGEPNLVEFVQEKKFGEMSECS 223
V + + L VI +++ A ++ + + E +VE FG +
Sbjct: 120 VEEIGNNKLRRA-FLNVIGKMSEAELIEQLSRYKPITKEEYLRIVEGKSGALFGLALQLP 178
Query: 224 AVCGGFLAGADDDEIQSLRRYGRAVGVLYQVVDDILE 260
A+ G L + L G +G +YQ+ DDI++
Sbjct: 179 ALLEGELG-------EDLYNLGVTIGTIYQMFDDIMD 208
>pdb|2AZK|A Chain A, Crystal Structure For The Mutant W136e Of Sulfolobus
Solfataricus Hexaprenyl Pyrophosphate Synthase
pdb|2AZK|B Chain B, Crystal Structure For The Mutant W136e Of Sulfolobus
Solfataricus Hexaprenyl Pyrophosphate Synthase
Length = 289
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 45/189 (23%), Positives = 82/189 (43%), Gaps = 15/189 (7%)
Query: 76 SVLAKGTKRAPPVMCVAACELFGVNRIAAFPTACALEMVHAASLIHDDLPCMDDDPSRRG 135
S + K KR + + G + ++ A A+E++H+ASL DD+ +D D +RRG
Sbjct: 43 SYILKDGKRFRGTLNMFFTVALGGDIKDSYGGALAIEILHSASLALDDI--VDLDATRRG 100
Query: 136 QPSNHTVYGVDIAILAGDALFPLGFQHIVSHTPPHLVPEPRVLRVIAEIARAVGSTGMAA 195
+ VYG I + L P + I + L E+ + +
Sbjct: 101 DKAAWVVYGNRKVIFITNYLIPTALRIIQTSYGDD------ALNTSIELEKDT-----SV 149
Query: 196 GQFLDLEGEPNLVEFVQEKKFGEMSECSAVCGGFLAGADDDEIQSLRRYGRAVGVLYQVV 255
G D+ + + + E K G + + S V + A + Q + G+ +G++YQV+
Sbjct: 150 GALRDMYDNSDYIRTI-ELKTGSLFKLSTVLSAY-ASKHYNTKQQMLDVGKYLGIIYQVI 207
Query: 256 DDILEAKAQ 264
DD ++ K +
Sbjct: 208 DDFVDYKTK 216
>pdb|1VG6|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima
F132aL128AI123A MUTANT
Length = 299
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 45/157 (28%), Positives = 72/157 (45%), Gaps = 11/157 (7%)
Query: 104 AFPTACALEMVHAASLIHDDLPCMDDDPSRRGQPSNHTVYGVDIAILAGDALFPLGFQHI 163
A + ALE+VH ASL+HDD +D RRG+ + + +YG A+ AGD + F H
Sbjct: 63 AISSLAALELVHLASLLHDD--VIDGARFRRGKETINFMYGDKAAVAAGDLVLVSAF-HT 119
Query: 164 VSHTPPHLVPEPRVLRVIAEIARAVGSTGMAAGQFLDLEGEPNLVEFVQEKKFGEMSECS 223
V + L VI +++ A ++ + + E +VE FG +
Sbjct: 120 VEEAGNNKARRA-ALNVIGKMSEAELIEQLSRYKPITKEEYLRIVEGKSGALFGLALQLP 178
Query: 224 AVCGGFLAGADDDEIQSLRRYGRAVGVLYQVVDDILE 260
A+ G L + L G +G +YQ+ DDI++
Sbjct: 179 ALLEGELG-------EDLYNLGVTIGTIYQMFDDIMD 208
>pdb|2AZL|A Chain A, Crystal Structure For The Mutant F117e Of Thermotoga
Maritima Octaprenyl Pyrophosphate Synthase
Length = 299
Score = 51.6 bits (122), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 45/157 (28%), Positives = 74/157 (47%), Gaps = 11/157 (7%)
Query: 104 AFPTACALEMVHAASLIHDDLPCMDDDPSRRGQPSNHTVYGVDIAILAGDALFPLGFQHI 163
A + ALE+VH ASL+HDD +D RRG+ + + +YG A+ AGD L + +H
Sbjct: 63 AISSLAALELVHLASLLHDD--VIDGARFRRGKETINFMYGDKAAVAAGD-LVLVSAEHT 119
Query: 164 VSHTPPHLVPEPRVLRVIAEIARAVGSTGMAAGQFLDLEGEPNLVEFVQEKKFGEMSECS 223
V + + L VI +++ A ++ + + E +VE FG +
Sbjct: 120 VEEIGNNKLRRA-FLNVIGKMSEAELIEQLSRYKPITKEEYLRIVEGKSGALFGLALQLP 178
Query: 224 AVCGGFLAGADDDEIQSLRRYGRAVGVLYQVVDDILE 260
A+ G L + L G +G +YQ+ DDI++
Sbjct: 179 ALLEGELG-------EDLYNLGVTIGTIYQMFDDIMD 208
>pdb|1VG4|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima F132aL128A
MUTANT
pdb|1VG4|B Chain B, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima F132aL128A
MUTANT
Length = 299
Score = 51.6 bits (122), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 45/157 (28%), Positives = 72/157 (45%), Gaps = 11/157 (7%)
Query: 104 AFPTACALEMVHAASLIHDDLPCMDDDPSRRGQPSNHTVYGVDIAILAGDALFPLGFQHI 163
A + ALE+VH ASL+HDD +D RRG+ + + +YG A+ AGD + F H
Sbjct: 63 AISSLAALELVHLASLLHDD--VIDGARFRRGKETINFMYGDKAAVAAGDLVLVSAF-HT 119
Query: 164 VSHTPPHLVPEPRVLRVIAEIARAVGSTGMAAGQFLDLEGEPNLVEFVQEKKFGEMSECS 223
V + L VI +++ A ++ + + E +VE FG +
Sbjct: 120 VEEIGNNKARRA-ALNVIGKMSEAELIEQLSRYKPITKEEYLRIVEGKSGALFGLALQLP 178
Query: 224 AVCGGFLAGADDDEIQSLRRYGRAVGVLYQVVDDILE 260
A+ G L + L G +G +YQ+ DDI++
Sbjct: 179 ALLEGELG-------EDLYNLGVTIGTIYQMFDDIMD 208
>pdb|1WMW|A Chain A, Crystal Structure Of Geranulgeranyl Diphosphate Synthase
From Thermus Thermophilus
pdb|1WMW|B Chain B, Crystal Structure Of Geranulgeranyl Diphosphate Synthase
From Thermus Thermophilus
pdb|1WMW|C Chain C, Crystal Structure Of Geranulgeranyl Diphosphate Synthase
From Thermus Thermophilus
pdb|1WMW|D Chain D, Crystal Structure Of Geranulgeranyl Diphosphate Synthase
From Thermus Thermophilus
Length = 330
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 55/218 (25%), Positives = 90/218 (41%), Gaps = 21/218 (9%)
Query: 53 IDQNLEKAITVK--YPEQIYESMRYSVLAKGTKRAPPVMCVAACELFGVNRIAAFPTACA 110
I Q L++ + + +P+ +Y + +G K ++ V + G A A A
Sbjct: 8 IRQALQERLLARLDHPDPLYRDLLQDYPRRGGKMLRGLLTVYSALAHGAPLEAGLEAATA 67
Query: 111 LEMVHAASLIHDDLPCMDDDPSRRGQPSNHTVYGVDIAILAGDALFPLGFQHIVSHTPPH 170
LE+ L+HDD+ D RRG+P+ H ++ + +A+ AGDA+ + +
Sbjct: 68 LELFQNWVLVHDDIE--DGSEERRGRPALHRLHPMPLALNAGDAMHAEMWGLLAEGLARG 125
Query: 171 LVPEPRVLRVIAEIARAVGSTGMAAGQFLDLEGEPNLVEFVQEKKFGEMSECSAV----- 225
L P P VL E+ R A GQ LDL ++ + + M A
Sbjct: 126 LFP-PEVLLEFHEVVRRT-----AYGQHLDLLWTLGGTFDLRPEDYFRMVAHKAAYYTAV 179
Query: 226 ----CGGFLAGADDDEIQSLRRYGRAVGVLYQVVDDIL 259
G LAG + G +G +Q+VDD+L
Sbjct: 180 APLRLGALLAGKTPP--AAYEEGGLRLGTAFQIVDDVL 215
>pdb|1V4J|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima V73y Mutant
pdb|1V4J|B Chain B, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima V73y Mutant
Length = 299
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 72/157 (45%), Gaps = 11/157 (7%)
Query: 104 AFPTACALEMVHAASLIHDDLPCMDDDPSRRGQPSNHTVYGVDIAILAGDALFPLGFQHI 163
A + ALE+ H ASL+HDD +D RRG+ + + +YG A+ AGD + F H
Sbjct: 63 AISSLAALELYHLASLLHDD--VIDGARFRRGKETINFMYGDKAAVAAGDLVLVSAF-HT 119
Query: 164 VSHTPPHLVPEPRVLRVIAEIARAVGSTGMAAGQFLDLEGEPNLVEFVQEKKFGEMSECS 223
V + + L VI +++ A ++ + + E +VE FG +
Sbjct: 120 VEEIGNNKLRRA-FLNVIGKMSEAELIEQLSRYKPITKEEYLRIVEGKSGALFGLALQLP 178
Query: 224 AVCGGFLAGADDDEIQSLRRYGRAVGVLYQVVDDILE 260
A+ G L + L G +G +YQ+ DDI++
Sbjct: 179 ALLEGELG-------EDLYNLGVTIGTIYQMFDDIMD 208
>pdb|1VG2|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima A76y Mutant
Length = 299
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 72/157 (45%), Gaps = 11/157 (7%)
Query: 104 AFPTACALEMVHAASLIHDDLPCMDDDPSRRGQPSNHTVYGVDIAILAGDALFPLGFQHI 163
A + ALE+VH SL+HDD +D RRG+ + + +YG A+ AGD + F H
Sbjct: 63 AISSLAALELVHLYSLLHDD--VIDGARFRRGKETINFMYGDKAAVAAGDLVLVSAF-HT 119
Query: 164 VSHTPPHLVPEPRVLRVIAEIARAVGSTGMAAGQFLDLEGEPNLVEFVQEKKFGEMSECS 223
V + + L VI +++ A ++ + + E +VE FG +
Sbjct: 120 VEEIGNNKLRRA-FLNVIGKMSEAELIEQLSRYKPITKEEYLRIVEGKSGALFGLALQLP 178
Query: 224 AVCGGFLAGADDDEIQSLRRYGRAVGVLYQVVDDILE 260
A+ G L + L G +G +YQ+ DDI++
Sbjct: 179 ALLEGELG-------EDLYNLGVTIGTIYQMFDDIMD 208
>pdb|1V4K|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima S77f Mutant
Length = 299
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 72/157 (45%), Gaps = 11/157 (7%)
Query: 104 AFPTACALEMVHAASLIHDDLPCMDDDPSRRGQPSNHTVYGVDIAILAGDALFPLGFQHI 163
A + ALE+VH A L+HDD +D RRG+ + + +YG A+ AGD + F H
Sbjct: 63 AISSLAALELVHLAFLLHDD--VIDGARFRRGKETINFMYGDKAAVAAGDLVLVSAF-HT 119
Query: 164 VSHTPPHLVPEPRVLRVIAEIARAVGSTGMAAGQFLDLEGEPNLVEFVQEKKFGEMSECS 223
V + + L VI +++ A ++ + + E +VE FG +
Sbjct: 120 VEEIGNNKLRRA-FLNVIGKMSEAELIEQLSRYKPITKEEYLRIVEGKSGALFGLALQLP 178
Query: 224 AVCGGFLAGADDDEIQSLRRYGRAVGVLYQVVDDILE 260
A+ G L + L G +G +YQ+ DDI++
Sbjct: 179 ALLEGELG-------EDLYNLGVTIGTIYQMFDDIMD 208
>pdb|1WL2|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima R90a Mutant
Length = 299
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 72/157 (45%), Gaps = 11/157 (7%)
Query: 104 AFPTACALEMVHAASLIHDDLPCMDDDPSRRGQPSNHTVYGVDIAILAGDALFPLGFQHI 163
A + ALE+VH ASL+HDD +D RG+ + + +YG A+ AGD + F H
Sbjct: 63 AISSLAALELVHLASLLHDD--VIDGARFARGKETINFMYGDKAAVAAGDLVLVSAF-HT 119
Query: 164 VSHTPPHLVPEPRVLRVIAEIARAVGSTGMAAGQFLDLEGEPNLVEFVQEKKFGEMSECS 223
V + + L VI +++ A ++ + + E +VE FG +
Sbjct: 120 VEEIGNNKLRRA-FLNVIGKMSEAELIEQLSRYKPITKEEYLRIVEGKSGALFGLALQLP 178
Query: 224 AVCGGFLAGADDDEIQSLRRYGRAVGVLYQVVDDILE 260
A+ G L + L G +G +YQ+ DDI++
Sbjct: 179 ALLEGELG-------EDLYNLGVTIGTIYQMFDDIMD 208
>pdb|1WL3|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima R91a Mutant
pdb|1WL3|B Chain B, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima R91a Mutant
Length = 299
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 72/157 (45%), Gaps = 11/157 (7%)
Query: 104 AFPTACALEMVHAASLIHDDLPCMDDDPSRRGQPSNHTVYGVDIAILAGDALFPLGFQHI 163
A + ALE+VH ASL+HDD +D R G+ + + +YG A+ AGD + F H
Sbjct: 63 AISSLAALELVHLASLLHDD--VIDGARFRAGKETINFMYGDKAAVAAGDLVLVSAF-HT 119
Query: 164 VSHTPPHLVPEPRVLRVIAEIARAVGSTGMAAGQFLDLEGEPNLVEFVQEKKFGEMSECS 223
V + + L VI +++ A ++ + + E +VE FG +
Sbjct: 120 VEEIGNNKLRRA-FLNVIGKMSEAELIEQLSRYKPITKEEYLRIVEGKSGALFGLALQLP 178
Query: 224 AVCGGFLAGADDDEIQSLRRYGRAVGVLYQVVDDILE 260
A+ G L + L G +G +YQ+ DDI++
Sbjct: 179 ALLEGELG-------EDLYNLGVTIGTIYQMFDDIMD 208
>pdb|2AZJ|A Chain A, Crystal Structure For The Mutant D81c Of Sulfolobus
Solfataricus Hexaprenyl Pyrophosphate Synthase
pdb|2AZJ|B Chain B, Crystal Structure For The Mutant D81c Of Sulfolobus
Solfataricus Hexaprenyl Pyrophosphate Synthase
Length = 289
Score = 47.8 bits (112), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 44/190 (23%), Positives = 81/190 (42%), Gaps = 17/190 (8%)
Query: 76 SVLAKGTKRAPPVMCVAACELFGVNRIAAFPTACALEMVHAASLIHDDLPCMDDDPSRRG 135
S + K KR + + G + ++ A A+E++H+ASL D+ +D D +RRG
Sbjct: 43 SYILKDGKRFRGTLNMFFTVALGGDIKDSYGGALAIEILHSASLALCDI--VDLDATRRG 100
Query: 136 QPSNHTVYGVDIAILAGDALFPLGFQHI-VSHTPPHLVPEPRVLRVIAEIARAVGSTGMA 194
+ VYG I + L P + I S+ L + + +
Sbjct: 101 DKAAWVVYGNRKVIFITNYLIPTALRIIQTSYGDDALNTSIELWK------------DTS 148
Query: 195 AGQFLDLEGEPNLVEFVQEKKFGEMSECSAVCGGFLAGADDDEIQSLRRYGRAVGVLYQV 254
G D+ + + + E K G + + S V + A + Q + G+ +G++YQV
Sbjct: 149 VGALRDMYDNSDYIRTI-ELKTGSLFKLSTVLSAY-ASKHYNTKQQMLDVGKYLGIIYQV 206
Query: 255 VDDILEAKAQ 264
+DD ++ K +
Sbjct: 207 IDDFVDYKTK 216
>pdb|1VG3|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima A76yS77F
MUTANT
Length = 299
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 71/157 (45%), Gaps = 11/157 (7%)
Query: 104 AFPTACALEMVHAASLIHDDLPCMDDDPSRRGQPSNHTVYGVDIAILAGDALFPLGFQHI 163
A + ALE+VH L+HDD +D RRG+ + + +YG A+ AGD + F H
Sbjct: 63 AISSLAALELVHLYFLLHDD--VIDGARFRRGKETINFMYGDKAAVAAGDLVLVSAF-HT 119
Query: 164 VSHTPPHLVPEPRVLRVIAEIARAVGSTGMAAGQFLDLEGEPNLVEFVQEKKFGEMSECS 223
V + + L VI +++ A ++ + + E +VE FG +
Sbjct: 120 VEEIGNNKLRRA-FLNVIGKMSEAELIEQLSRYKPITKEEYLRIVEGKSGALFGLALQLP 178
Query: 224 AVCGGFLAGADDDEIQSLRRYGRAVGVLYQVVDDILE 260
A+ G L + L G +G +YQ+ DDI++
Sbjct: 179 ALLEGELG-------EDLYNLGVTIGTIYQMFDDIMD 208
>pdb|3LK5|A Chain A, Crystal Structure Of Putative Geranylgeranyl Pyrophosphate
Synthase From Corynebacterium Glutamicum
pdb|3QQV|A Chain A, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Corynebacterium Glutamicum Complexed With Isoprenyl
Diphosphate And Magnesium
Length = 380
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 72/178 (40%), Gaps = 31/178 (17%)
Query: 105 FPTACALEMVHAASLIHDDLPCMDDDPSRRGQPSNHTV----------------YGVDIA 148
A +LE + A +LIHDD+ +D +RRG P+ H +GV ++
Sbjct: 91 LDAAASLEFIQACALIHDDI--IDSSDTRRGAPTVHRAVEADHRANNFEGDPEHFGVSVS 148
Query: 149 ILAGDALFPLGFQHIVSHTPPHLVPEPRVLRVIAEIARAVGSTGMAAGQFLDLEGEPNLV 208
ILAGD + L E L + R T + GQ LD+ E +
Sbjct: 149 ILAGDXALVWAEDXL---QDSGLSAE--ALARTRDAWRGX-RTEVIGGQLLDIYLESHAN 202
Query: 209 EFVQEKKFGEMSECSAVC-------GGFLAGADDDEIQSLRRYGRAVGVLYQVVDDIL 259
E V+ + +A G +AG I +L YG +G+ +Q+ DD+L
Sbjct: 203 ESVELADSVNRFKTAAYTIARPLHLGASIAGGSPQLIDALLHYGHDIGIAFQLRDDLL 260
>pdb|2DH4|A Chain A, Geranylgeranyl Pyrophosphate Synthase
pdb|2DH4|B Chain B, Geranylgeranyl Pyrophosphate Synthase
pdb|2E8T|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium, Fspp And Ipp
pdb|2E8T|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium, Fspp And Ipp
pdb|2E8U|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Ipp (P21)
pdb|2E8U|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Ipp (P21)
pdb|2E8V|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Product Ggpp (P21)
pdb|2E8V|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Product Ggpp (P21)
pdb|2E8W|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Ipp
pdb|2E8W|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Ipp
pdb|2E8X|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Gpp
pdb|2E8X|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Gpp
pdb|2E90|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium, Pyrophosphate And Fpp
pdb|2E90|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium, Pyrophosphate And Fpp
pdb|2E91|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-91
pdb|2E91|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-91
pdb|2E92|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-261
pdb|2E92|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-261
pdb|2E93|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Bph-629
pdb|2E93|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Bph-629
pdb|2E94|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-364
pdb|2E94|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-364
pdb|2E95|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-675
pdb|2E95|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-675
pdb|2Z7H|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Inhibitor Bph-210
pdb|2Z7H|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Inhibitor Bph-210
pdb|2Z4V|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Ggpp (Inhibitory Site)
pdb|2Z4V|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Ggpp (Inhibitory Site)
pdb|2Z4W|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-749
pdb|2Z4W|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-749
pdb|2Z4X|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-252 (P21)
pdb|2Z4X|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-252 (P21)
pdb|2Z4Y|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-252
pdb|2Z4Y|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-252
pdb|2Z4Z|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-Sc01
pdb|2Z4Z|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-Sc01
pdb|2Z50|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Bph-28
pdb|2Z50|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Bph-28
pdb|2Z52|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-23
pdb|2Z52|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-23
pdb|2Z78|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Bph-806
pdb|2Z78|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Bph-806
pdb|2Z7I|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Inhibitor Bph-742
pdb|2Z7I|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Inhibitor Bph-742
pdb|2ZEU|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Bph-715
pdb|2ZEU|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Bph-715
pdb|2ZEV|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium, Ipp And Bph-715
pdb|2ZEV|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium, Ipp And Bph-715
Length = 340
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/179 (22%), Positives = 73/179 (40%), Gaps = 24/179 (13%)
Query: 99 VNRIAAFP------TACALEMVHAASLIHDDLPCMDDDPSRRGQPSNHTVYGVDIAILAG 152
+NR+ P + +E++H +SL+ DD+ D+ P RRGQ ++H ++GV I
Sbjct: 51 INRVMNLPKDQLAIVSQIVELLHNSSLLIDDIE--DNAPLRRGQTTSHLIFGVPSTINTA 108
Query: 153 DALFPLGFQHIVSHTPPHLVPEPRVLRVIAEIARAVGSTGMAAGQFLDLEGEPNLVEFVQ 212
+ ++ Q + T EP +I + + GQ LD+ L E +
Sbjct: 109 NYMYFRAMQLVSQLT----TKEPLYHNLITIFNEEL--INLHRGQGLDIYWRDFLPEIIP 162
Query: 213 EKKFGEMSECSAVCGGFL---------AGADDDEIQSLRRYGRAVGVLYQVVDDILEAK 262
++ ++ GG SL + +G++YQ+ DD L K
Sbjct: 163 TQEM-YLNMVMNKTGGLFRLTLRLMEALSPSSHHGHSLVPFINLLGIIYQIRDDYLNLK 220
>pdb|2Q80|A Chain A, Crystal Structure Of Human Geranylgeranyl Pyrophosphate
Synthase Bound To Ggpp
pdb|2Q80|B Chain B, Crystal Structure Of Human Geranylgeranyl Pyrophosphate
Synthase Bound To Ggpp
pdb|2Q80|C Chain C, Crystal Structure Of Human Geranylgeranyl Pyrophosphate
Synthase Bound To Ggpp
pdb|2Q80|D Chain D, Crystal Structure Of Human Geranylgeranyl Pyrophosphate
Synthase Bound To Ggpp
pdb|2Q80|E Chain E, Crystal Structure Of Human Geranylgeranyl Pyrophosphate
Synthase Bound To Ggpp
pdb|2Q80|F Chain F, Crystal Structure Of Human Geranylgeranyl Pyrophosphate
Synthase Bound To Ggpp
Length = 301
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 67/149 (44%), Gaps = 16/149 (10%)
Query: 112 EMVHAASLIHDDLPCMDDDPSRRGQPSNHTVYGVDIAILAGDALFPLGFQHIVSHTPPHL 171
EM+H ASL+ DD+ D+ RRG P H++YG+ I + + ++ LG + +++ P
Sbjct: 55 EMLHNASLLIDDIE--DNSKLRRGFPVAHSIYGIPSVINSANYVYFLGLEKVLTLDHPDA 112
Query: 172 VPEPRVLRVIAEIARAVGSTGMAAGQFLDLEGEPNLVEFVQEKKFGEMSECSAVCGGFLA 231
V R + E+ + GQ LD+ N +E+ + + + G
Sbjct: 113 V--KLFTRQLLELHQ---------GQGLDIYWRDNYTCPTEEEYKAMVLQKTGGLFGLAV 161
Query: 232 GADD---DEIQSLRRYGRAVGVLYQVVDD 257
G D + L+ +G+ +Q+ DD
Sbjct: 162 GLMQLFSDYKEDLKPLLNTLGLFFQIRDD 190
>pdb|3TC1|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Helicobacter Pylori
pdb|3TC1|B Chain B, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Helicobacter Pylori
Length = 315
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Query: 104 AFPTACALEMVHAASLIHDDLPCMDDDPSRRGQPSNHTVYGVDIAILAGDALFPLGF 160
A +EM+ ASL+HDD +D RR PS + ++G A++ GD + F
Sbjct: 59 ALNLCTIVEMIQTASLLHDD--VIDKATMRRKLPSINALFGNFNAVMLGDVFYSKAF 113
>pdb|1WL1|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima H74a Mutant
pdb|1WL1|B Chain B, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima H74a Mutant
Length = 299
Score = 33.1 bits (74), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 63/142 (44%), Gaps = 11/142 (7%)
Query: 119 LIHDDLPCMDDDPSRRGQPSNHTVYGVDIAILAGDALFPLGFQHIVSHTPPHLVPEPRVL 178
L+HDD +D RRG+ + + +YG A+ AGD + F H V + + L
Sbjct: 78 LLHDD--VIDGARFRRGKETINFMYGDKAAVAAGDLVLVSAF-HTVEEIGNNKLRRA-FL 133
Query: 179 RVIAEIARAVGSTGMAAGQFLDLEGEPNLVEFVQEKKFGEMSECSAVCGGFLAGADDDEI 238
VI +++ A ++ + + E +VE FG + A+ G L
Sbjct: 134 NVIGKMSEAELIEQLSRYKPITKEEYLRIVEGKSGALFGLALQLPALLEGELG------- 186
Query: 239 QSLRRYGRAVGVLYQVVDDILE 260
+ L G +G +YQ+ DDI++
Sbjct: 187 EDLYNLGVTIGTIYQMFDDIMD 208
>pdb|3U44|A Chain A, Crystal Structure Of Addab-Dna Complex
pdb|3U4Q|A Chain A, Structure Of Addab-Dna Complex At 2.8 Angstroms
Length = 1232
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 41/92 (44%), Gaps = 19/92 (20%)
Query: 102 IAAFPTACALEMVHAASLIHDDLPCMDDDPS------RRGQPSNHTVYGVDIAILAGDAL 155
I+ P A++M+H+ L+ DDL ++ S RRG+P + G
Sbjct: 942 ISGHPARFAVQMIHSYDLLDDDLEERMEEKSERLEAIRRGEP------------VPGSFA 989
Query: 156 FPLGFQHIVSHTPPHL-VPEPRVLRVIAEIAR 186
F + +S T PH V + R + ++EI R
Sbjct: 990 FDEKAREQLSWTYPHQEVTQIRTKQSVSEIKR 1021
>pdb|2EWG|A Chain A, T. Brucei Farnesyl Diphosphate Synthase Complexed With
Minodronate
pdb|2EWG|B Chain B, T. Brucei Farnesyl Diphosphate Synthase Complexed With
Minodronate
pdb|2I19|A Chain A, T. Brucei Farnesyl Diphosphate Synthase Complexed With
Bisphosphonate
pdb|2I19|B Chain B, T. Brucei Farnesyl Diphosphate Synthase Complexed With
Bisphosphonate
pdb|2OGD|A Chain A, T. Brucei Farnesyl Diphosphate Synthase Complexed With
Bisphosphonate Bph-527
pdb|2OGD|B Chain B, T. Brucei Farnesyl Diphosphate Synthase Complexed With
Bisphosphonate Bph-527
pdb|2P1C|A Chain A, T. Brucei Farnesyl Diphosphate Synthase Complexed With
Bisphosphonate Bph-210
pdb|2P1C|B Chain B, T. Brucei Farnesyl Diphosphate Synthase Complexed With
Bisphosphonate Bph-210
pdb|3DYF|A Chain A, T. Brucei Farnesyl Diphosphate Synthase Complexed With
Bisphosphonate Bph-461 And Isopentyl Diphosphate
pdb|3DYF|B Chain B, T. Brucei Farnesyl Diphosphate Synthase Complexed With
Bisphosphonate Bph-461 And Isopentyl Diphosphate
pdb|3DYG|A Chain A, T. Brucei Farnesyl Diphosphate Synthase Complexed With
Bisphosphonate Bph-461
pdb|3DYG|B Chain B, T. Brucei Farnesyl Diphosphate Synthase Complexed With
Bisphosphonate Bph-461
pdb|3DYH|A Chain A, T. Brucei Farnesyl Diphosphate Synthase Complexed With
Bisphosphonate Bph-721
pdb|3DYH|B Chain B, T. Brucei Farnesyl Diphosphate Synthase Complexed With
Bisphosphonate Bph-721
pdb|3EFQ|A Chain A, T. Brucei Farnesyl Diphosphate Synthase Complexed With
Bisphosphonate Bph-714
pdb|3EFQ|B Chain B, T. Brucei Farnesyl Diphosphate Synthase Complexed With
Bisphosphonate Bph-714
Length = 390
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 6/72 (8%)
Query: 98 GVNRIAAFPTACA----LEMVHAASLIHDDLPCMDDDPSRRGQPSNHTVYGVDIAILAGD 153
G R AC +E + A L+ DD+ MD+ +RRG+P + V + D
Sbjct: 98 GARRKRVLHDACVCGWMIEFLQAHYLVEDDI--MDNSVTRRGKPCWYRHPDVTVQCAIND 155
Query: 154 ALFPLGFQHIVS 165
L + H+++
Sbjct: 156 GLLLKSWTHMMA 167
>pdb|3EGT|A Chain A, T. Brucei Farnesyl Diphosphate Synthase Complexed With
Bisphosphonate Bph-722
pdb|3EGT|B Chain B, T. Brucei Farnesyl Diphosphate Synthase Complexed With
Bisphosphonate Bph-722
Length = 413
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 6/72 (8%)
Query: 98 GVNRIAAFPTACA----LEMVHAASLIHDDLPCMDDDPSRRGQPSNHTVYGVDIAILAGD 153
G R AC +E + A L+ DD+ MD+ +RRG+P + V + D
Sbjct: 121 GARRKRVLHDACVCGWMIEFLQAHYLVEDDI--MDNSVTRRGKPCWYRHPDVTVQCAIND 178
Query: 154 ALFPLGFQHIVS 165
L + H+++
Sbjct: 179 GLLLKSWTHMMA 190
>pdb|2PAJ|A Chain A, Crystal Structure Of An Amidohydrolase From An
Environmental Sample Of Sargasso Sea
Length = 492
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 16/72 (22%), Positives = 33/72 (45%)
Query: 187 AVGSTGMAAGQFLDLEGEPNLVEFVQEKKFGEMSECSAVCGGFLAGADDDEIQSLRRYGR 246
++G G A+ + D+ E ++ Q + G +++ + G F GA I + +G
Sbjct: 332 SIGVDGAASNEAADMISEVHMTWLAQRARLGMLAQPAYRGGSFEGGAGAASIAEVIHWGT 391
Query: 247 AVGVLYQVVDDI 258
A G +D++
Sbjct: 392 AGGARVMGLDEV 403
>pdb|4AIB|A Chain A, Crystal Structure Of Ornithine Decarboxylase From
Entamoeba Histolytica.
pdb|4AIB|B Chain B, Crystal Structure Of Ornithine Decarboxylase From
Entamoeba Histolytica.
pdb|4AIB|C Chain C, Crystal Structure Of Ornithine Decarboxylase From
Entamoeba Histolytica.
pdb|4AIB|D Chain D, Crystal Structure Of Ornithine Decarboxylase From
Entamoeba Histolytica
Length = 395
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 17/87 (19%), Positives = 42/87 (48%), Gaps = 2/87 (2%)
Query: 173 PEPRVLRVIAEIARAVGSTGMAA-GQFLDLEGEPNLVEFVQE-KKFGEMSECSAVCGGFL 230
PEP +++++ E+ + + LDL P + + Q K + ++ E S +
Sbjct: 60 PEPHLVKLLGELGCGFDCASLNEIKEVLDLGFNPEDITYSQTFKPYNQLIEASHLGINHT 119
Query: 231 AGADDDEIQSLRRYGRAVGVLYQVVDD 257
DE+Q + +Y +G++ +++++
Sbjct: 120 IVDSIDEVQKIAKYAPKMGIMIRIMEN 146
>pdb|4E1E|A Chain A, Crystal Structure Of Trypanosome Cruzi Farnesyl
Diphosphate Synthase In Complex With
[2-(n-hexylamino)ethane-1,1-diyl]bisphosphonic Acid And
Mg2+
Length = 361
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 41/173 (23%), Positives = 67/173 (38%), Gaps = 28/173 (16%)
Query: 111 LEMVHAASLIHDDLPCMDDDPSRRGQPSNHTVYGVDIAILAGDALFPLGFQHIVSHTPPH 170
+E + A L+ DD+ MD RRG+P + GV D + + I++ H
Sbjct: 86 IEFLQAHYLVEDDI--MDGSVMRRGKPCWYRFPGVTTQCAINDGIILKSWTQIMAW---H 140
Query: 171 LVPEPRVLRVI------AEIARAVGS----TGMAAGQFLDLE-GEPNLVEF--------- 210
+ L+ + + A AVG T M LD E +P +F
Sbjct: 141 YFADRPFLKDLLCLFQKVDYATAVGQMYDVTSMCDSNKLDPEVAQPMTTDFAEFTPAIYK 200
Query: 211 --VQEKKFGEMSECSAVCGGFLA-GADDDEIQSLRRYGRAVGVLYQVVDDILE 260
V+ K V G F++ A E+ + R +G +QV DD+++
Sbjct: 201 RIVKYKTTFYTYLLPLVMGLFVSEAAASVEMNLVERVAHLIGEYFQVQDDVMD 253
>pdb|4DZW|A Chain A, Crystal Structure Of Trypanosome Cruzi Farnesyl
Diphosphate Synthase In Complex With
[2-(cyclohexylamino)ethane-1,1-diyl]bisphosphonic Acid
And Mg2+
Length = 362
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 41/173 (23%), Positives = 67/173 (38%), Gaps = 28/173 (16%)
Query: 111 LEMVHAASLIHDDLPCMDDDPSRRGQPSNHTVYGVDIAILAGDALFPLGFQHIVSHTPPH 170
+E + A L+ DD+ MD RRG+P + GV D + + I++ H
Sbjct: 87 IEFLQAHYLVEDDI--MDGSVMRRGKPCWYRFPGVTTQCAINDGIILKSWTQIMAW---H 141
Query: 171 LVPEPRVLRVI------AEIARAVGS----TGMAAGQFLDLE-GEPNLVEF--------- 210
+ L+ + + A AVG T M LD E +P +F
Sbjct: 142 YFADRPFLKDLLCLFQKVDYATAVGQMYDVTSMCDSNKLDPEVAQPMTTDFAEFTPAIYK 201
Query: 211 --VQEKKFGEMSECSAVCGGFLA-GADDDEIQSLRRYGRAVGVLYQVVDDILE 260
V+ K V G F++ A E+ + R +G +QV DD+++
Sbjct: 202 RIVKYKTTFYTYLLPLVMGLFVSEAAASVEMNLVERVAHLIGEYFQVQDDVMD 254
>pdb|1YHK|A Chain A, Trypanosoma Cruzi Farnesyl Diphosphate Synthase
pdb|1YHL|A Chain A, Structure Of The Complex Of Trypanosoma Cruzi Farnesyl
Diphosphate Synthase With Risedronate, Dmapp And Mg+2
pdb|3IBA|A Chain A, Crystal Structure Of The Complex Of Trypanosoma Cruzi
Farnesyl Diphosphate Synthase With Zoledronate, Ipp And
Mg2+
pdb|3ICK|A Chain A, Trypanosoma Cruzi Farnesyl Diphosphate Synthase Homodimer
In Complex With Minodronate And Isopentenyl Disphosphate
pdb|3ICM|A Chain A, Trypanosoma Cruzi Farnesyl Diphosphate Synthase Homodimer
In Complex With Isopentenyl Pyrophosphate, Mg2+ And
1-(2-
Hydroxy-2,2-Bis-Phosphono-Ethyl)-3-Phenyl-Pyridinium
pdb|3ICN|A Chain A, Trypanosoma Cruzi Farnesyl Diphosphate Synthase Homodimer
In Complex With Isopentenyl Pyrophosphate And
3-Fluoro-1-(2-
Hydroxy-2,2-Bis-Phosphono-Ethyl)-Pyridinium
pdb|3ICZ|A Chain A, Trypanosoma Cruzi Farnesyl Diphosphate Synthase Homodimer
In Complex With
1-(2,2-Bis-Phosphono-Ethyl)-3-Butyl-Pyridinium And
Isopentenyl Pyrophosphate
pdb|3ID0|A Chain A, Trypanosoma Cruzi Farnesyl Diphosphate Synthase Homodimer
In Complex With
3-Fluoro-1-(2-Hydroxy-2,2-Bisphosphono-Ethyl) Pyridinium
pdb|4DWB|A Chain A, Crystal Structure Of Trypanosoma Cruzi Farnesyl
Diphosphate Synthase In Complex With
[2-(n-pentylamino)ethane-1,1-diyl]bisphosphonic Acid And
Mg2+
pdb|4DWG|A Chain A, Crystal Structure Of Trypanosome Cruzi Farnesyl
Diphosphate Synthase In Complex With
[2-(n-heptylamino)ethane-1,1-diyl]bisphosphonic Acid And
Mg2+
pdb|4DXJ|A Chain A, Crystal Structure Of Trypanosome Cruzi Farnesyl
Diphosphate Synthase In Complex With
[2-(n-propylamino)ethane-1,1-diyl]bisphosphonic Acid And
Mg2+
pdb|4DXJ|B Chain B, Crystal Structure Of Trypanosome Cruzi Farnesyl
Diphosphate Synthase In Complex With
[2-(n-propylamino)ethane-1,1-diyl]bisphosphonic Acid And
Mg2+
pdb|4DXJ|C Chain C, Crystal Structure Of Trypanosome Cruzi Farnesyl
Diphosphate Synthase In Complex With
[2-(n-propylamino)ethane-1,1-diyl]bisphosphonic Acid And
Mg2+
Length = 362
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 41/173 (23%), Positives = 67/173 (38%), Gaps = 28/173 (16%)
Query: 111 LEMVHAASLIHDDLPCMDDDPSRRGQPSNHTVYGVDIAILAGDALFPLGFQHIVSHTPPH 170
+E + A L+ DD+ MD RRG+P + GV D + + I++ H
Sbjct: 87 IEFLQAHYLVEDDI--MDGSVMRRGKPCWYRFPGVTTQCAINDGIILKSWTQIMAW---H 141
Query: 171 LVPEPRVLRVI------AEIARAVGS----TGMAAGQFLDLE-GEPNLVEF--------- 210
+ L+ + + A AVG T M LD E +P +F
Sbjct: 142 YFADRPFLKDLLCLFQKVDYATAVGQMYDVTSMCDSNKLDPEVAQPMTTDFAEFTPAIYK 201
Query: 211 --VQEKKFGEMSECSAVCGGFLA-GADDDEIQSLRRYGRAVGVLYQVVDDILE 260
V+ K V G F++ A E+ + R +G +QV DD+++
Sbjct: 202 RIVKYKTTFYTYLLPLVMGLFVSEAAASVEMNLVERVAHLIGEYFQVQDDVMD 254
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.137 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,112,228
Number of Sequences: 62578
Number of extensions: 348220
Number of successful extensions: 1038
Number of sequences better than 100.0: 76
Number of HSP's better than 100.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 854
Number of HSP's gapped (non-prelim): 78
length of query: 334
length of database: 14,973,337
effective HSP length: 99
effective length of query: 235
effective length of database: 8,778,115
effective search space: 2062857025
effective search space used: 2062857025
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)