BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019903
(334 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q39108|GGR_ARATH Heterodimeric geranylgeranyl pyrophosphate synthase small subunit,
chloroplastic OS=Arabidopsis thaliana GN=GGR PE=1 SV=2
Length = 326
Score = 398 bits (1022), Expect = e-110, Method: Compositional matrix adjust.
Identities = 219/337 (64%), Positives = 253/337 (75%), Gaps = 24/337 (7%)
Query: 1 MIFSSALLANPPCVCLPRK---FPVRCSSLPVSAASQLR--STQFDLKTYWTTLITEIDQ 55
M+FS + + LP K P++ S + ++S S FDL+TYWTTLITEI+Q
Sbjct: 1 MLFSGSAIPLSSFCSLPEKPHTLPMKLSPAAIRSSSSSAPGSLNFDLRTYWTTLITEINQ 60
Query: 56 NLEKAITVKYPEQIYESMRYSVLAKGTKRAPPVMCVAACELFGVNRIAAFPTACALEMVH 115
L++AI VK+P IYE+MRYSVLA+G KRAPPVMCVAACELFG +R+AAFPTACALEMVH
Sbjct: 61 KLDEAIPVKHPAGIYEAMRYSVLAQGAKRAPPVMCVAACELFGGDRLAAFPTACALEMVH 120
Query: 116 AASLIHDDLPCMDDDPSRRGQPSNHTVYGVDIAILAGDALFPLGFQHIVSHTPPHLVPEP 175
AASLIHDDLPCMDDDP RRG+PSNHTVYG +AILAGDALFPL FQHIVSHTPP LVP
Sbjct: 121 AASLIHDDLPCMDDDPVRRGKPSNHTVYGSGMAILAGDALFPLAFQHIVSHTPPDLVPRA 180
Query: 176 RVLRVIAEIARAVGSTGMAAGQFLDLEGEPNLVEFVQEKKFGEMSECSAVCGGFLAGADD 235
+LR+I EIAR VGSTGMAAGQ++DLEG P + FVQEKKFG M ECSAVCGG L GA +
Sbjct: 181 TILRLITEIARTVGSTGMAAGQYVDLEGGPFPLSFVQEKKFGAMGECSAVCGGLLGGATE 240
Query: 236 DEIQSLRRYGRAVGVLYQVVDDILEAKAQTPRDEEKKKKKGKSYVAFYGVEKA-MEVAEE 294
DE+QSLRRYGRAVG+LYQVVDDI E K KK G G EK ME+AEE
Sbjct: 241 DELQSLRRYGRAVGMLYQVVDDITEDK--------KKSYDG-------GAEKGMMEMAEE 285
Query: 295 LRAKAKEELDRF-KKY--GDNVLPLYSFIDYAADREF 328
L+ KAK+EL F KY GD ++PLY+F+DYAA R F
Sbjct: 286 LKEKAKKELQVFDNKYGGGDTLVPLYTFVDYAAHRHF 322
>sp|Q94ID7|GGPPS_HEVBR Geranylgeranyl pyrophosphate synthase, chloroplastic OS=Hevea
brasiliensis GN=GGPS PE=1 SV=1
Length = 370
Score = 251 bits (641), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 139/343 (40%), Positives = 197/343 (57%), Gaps = 35/343 (10%)
Query: 12 PCVCLPRKFPVRCSSLPVSAASQLRSTQ--------------FDLKTYWTTLITEIDQNL 57
P L F R S P+S+ S + + + FD K+Y I+Q L
Sbjct: 35 PLKSLAISFAYRKSERPISSVSAIITKEEETLQEEQNNPPPSFDFKSYMLQKGNSINQAL 94
Query: 58 EKAITVKYPEQIYESMRYSVLAKGTKRAPPVMCVAACELFGVNRIAAFPTACALEMVHAA 117
E AI ++ P +I+ESMRYS+LA G KR P +C+AACEL G N A P ACA+EM+H
Sbjct: 95 EAAIPLQEPAKIHESMRYSLLA-GGKRVRPALCLAACELVGGNDSMAMPAACAVEMIHTM 153
Query: 118 SLIHDDLPCMDDDPSRRGQPSNHTVYGVDIAILAGDALFPLGFQHIVSHTPPHLVPEPRV 177
SLIHDDLPCMD+D RRG+P+NH V+G D+A+LAGDAL F+HI T V R+
Sbjct: 154 SLIHDDLPCMDNDDLRRGKPTNHIVFGEDVAVLAGDALLAFAFEHIAVSTLN--VSSARI 211
Query: 178 LRVIAEIARAVGSTGMAAGQFLDLEGEPNL------VEFVQEKKFGEMSECSAVCGGFLA 231
+R + E+A+A+G+ G+ AGQ +D+ E + +EF+ K ++ E + V G L
Sbjct: 212 VRAVGELAKAIGAEGLVAGQVVDINSEGSSEVDLEKLEFIHIHKTAKLLEGAVVLGAILG 271
Query: 232 GADDDEIQSLRRYGRAVGVLYQVVDDILEAKAQTPRDEEKKKKKGKSYVA-------FYG 284
G D+E++ LR+Y R +G+L+QVVDDIL+ T +E K GK VA G
Sbjct: 272 GGTDEEVEKLRKYARDIGLLFQVVDDILDV---TKSSQELGKTAGKDLVADKVTYPKLLG 328
Query: 285 VEKAMEVAEELRAKAKEELDRFKKYGDNVLPLYSFIDYAADRE 327
+EK+ E AE+L +A+E+L F + PL + +Y A R+
Sbjct: 329 IEKSREFAEKLNKEAQEQLAGFDP--EKAAPLIALANYIAHRQ 369
>sp|P34802|GGPP1_ARATH Heterodimeric geranylgeranyl pyrophosphate synthase large subunit
1, chloroplastic OS=Arabidopsis thaliana GN=GGPPS1 PE=1
SV=2
Length = 371
Score = 249 bits (637), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 130/309 (42%), Positives = 188/309 (60%), Gaps = 21/309 (6%)
Query: 34 QLRSTQFDLKTYWTTLITEIDQNLEKAITVKYPEQIYESMRYSVLAKGTKRAPPVMCVAA 93
Q + FD +Y T +++ L+ A+ ++ P +I+E+MRYS+LA G KR PV+C+AA
Sbjct: 68 QSEPSSFDFMSYIITKAELVNKALDSAVPLREPLKIHEAMRYSLLAGG-KRVRPVLCIAA 126
Query: 94 CELFGVNRIAAFPTACALEMVHAASLIHDDLPCMDDDPSRRGQPSNHTVYGVDIAILAGD 153
CEL G A P ACA+EM+H SLIHDDLPCMD+D RRG+P+NH V+G D+A+LAGD
Sbjct: 127 CELVGGEESTAMPAACAVEMIHTMSLIHDDLPCMDNDDLRRGKPTNHKVFGEDVAVLAGD 186
Query: 154 ALFPLGFQHIVSHTPPHLVPEPRVLRVIAEIARAVGSTGMAAGQFLDLEGEP-------- 205
AL F+H+ S T +V RV+R + E+A+A+G+ G+ AGQ +D+ E
Sbjct: 187 ALLSFAFEHLASATSSDVVSPVRVVRAVGELAKAIGTEGLVAGQVVDISSEGLDLNDVGL 246
Query: 206 NLVEFVQEKKFGEMSECSAVCGGFLAGADDDEIQSLRRYGRAVGVLYQVVDDILEAKAQT 265
+EF+ K + E SAV G + G DDEI+ LR++ R +G+L+QVVDDIL+ T
Sbjct: 247 EHLEFIHLHKTAALLEASAVLGAIVGGGSDDEIERLRKFARCIGLLFQVVDDILDV---T 303
Query: 266 PRDEEKKKKKGKSYVA-------FYGVEKAMEVAEELRAKAKEELDRFKKYGDNVLPLYS 318
+E K GK +A G+EK+ E AE+L +A+++L F D V PL +
Sbjct: 304 KSSKELGKTAGKDLIADKLTYPKIMGLEKSREFAEKLNREARDQLLGFDS--DKVAPLLA 361
Query: 319 FIDYAADRE 327
+Y A R+
Sbjct: 362 LANYIAYRQ 370
>sp|Q43133|GGPPS_SINAL Geranylgeranyl pyrophosphate synthase, chloroplastic/chromoplastic
OS=Sinapis alba GN=GGPS1 PE=1 SV=1
Length = 366
Score = 247 bits (630), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 128/303 (42%), Positives = 188/303 (62%), Gaps = 22/303 (7%)
Query: 40 FDLKTYWTTLITEIDQNLEKAITVKYPEQIYESMRYSVLAKGTKRAPPVMCVAACELFGV 99
FD +Y +++ L+ A+ ++ P +I+E+MRYS+LA G KR PV+C+AACEL G
Sbjct: 70 FDFMSYIIRKADSVNKALDSAVPLREPLKIHEAMRYSLLAGG-KRVRPVLCIAACELVGG 128
Query: 100 NRIAAFPTACALEMVHAASLIHDDLPCMDDDPSRRGQPSNHTVYGVDIAILAGDALFPLG 159
A P CA+EM+H SLIHDDLPCMD+D RRG+P+NH VYG D+A+LAGDAL
Sbjct: 129 EESLAMPARCAVEMIHTMSLIHDDLPCMDNDDLRRGKPTNHKVYGEDVAVLAGDALLSFA 188
Query: 160 FQHIVSHTPPHLVPEPRVLRVIAEIARAVGSTGMAAGQFLDLEGE----PNL----VEFV 211
F+H+ S T + P RV+R + E+A+A+G+ G+ AGQ +D+ E N+ ++F+
Sbjct: 189 FEHLASATSSEVSP-ARVVRAVGELAKAIGTEGLVAGQVVDISSEGLDLNNVGLEHLKFI 247
Query: 212 QEKKFGEMSECSAVCGGFLAGADDDEIQSLRRYGRAVGVLYQVVDDILEAKAQTPRDEEK 271
K + E SAV GG + G D+EI+ LR++ R +G+L+QVVDDIL+ T +E
Sbjct: 248 HLHKTAALLEASAVLGGIIGGGSDEEIERLRKFARCIGLLFQVVDDILDV---TKSSQEL 304
Query: 272 KKKKGKSYVA-------FYGVEKAMEVAEELRAKAKEELDRFKKYGDNVLPLYSFIDYAA 324
K GK +A G+EK+ E AE+L +A+++L F D V PL + +Y A
Sbjct: 305 GKTAGKDLIADKLTYPKLMGLEKSREFAEKLNTEARDQLLGFDS--DKVAPLLALANYIA 362
Query: 325 DRE 327
+R+
Sbjct: 363 NRQ 365
>sp|Q42698|GGPPS_CATRO Geranylgeranyl pyrophosphate synthase, chloroplastic
OS=Catharanthus roseus GN=GGPS1 PE=3 SV=1
Length = 357
Score = 244 bits (623), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 137/341 (40%), Positives = 197/341 (57%), Gaps = 39/341 (11%)
Query: 18 RKFPVRCSSLPVSAASQLRSTQF------------------DLKTYWTTLITEIDQNLEK 59
RK CS L +SA TQ D K Y +++ LE
Sbjct: 24 RKPIFSCSRLSISAIITKEQTQEESESKSKKEVAFSSSSSFDFKAYMIGKANSVNKALED 83
Query: 60 AITVKYPEQIYESMRYSVLAKGTKRAPPVMCVAACELFGVNRIAAFPTACALEMVHAASL 119
A+ V+ P +I+ESMRYS+LA G KR P++C+AACELFG A P+ACA+EM+H SL
Sbjct: 84 AVLVREPLKIHESMRYSLLA-GGKRVRPMLCIAACELFGGTESVAMPSACAVEMIHTMSL 142
Query: 120 IHDDLPCMDDDPSRRGQPSNHTVYGVDIAILAGDALFPLGFQHIVSHTPPHLVPEPRVLR 179
+HDDLPCMD+D RRG+P+NH V+G D+A+LAGDAL F+HI + T V R++R
Sbjct: 143 MHDDLPCMDNDDLRRGKPTNHKVFGEDVAVLAGDALLAFAFEHIATATKG--VSSERIVR 200
Query: 180 VIAEIARAVGSTGMAAGQFLDL--EGEPNL----VEFVQEKKFGEMSECSAVCGGFLAGA 233
V+ E+A+ +GS G+ AGQ +D+ EG ++ +EF+ K + E S V G + GA
Sbjct: 201 VVGELAKCIGSEGLVAGQVVDVCSEGIADVGLEHLEFIHIHKTAALLEGSVVLGAIVGGA 260
Query: 234 DDDEIQSLRRYGRAVGVLYQVVDDILEAKAQTPRDEEKKKKKGKSYVA-------FYGVE 286
+D++I LR++ R +G+L+QVVDDIL+ T +E K GK VA G++
Sbjct: 261 NDEQISKLRKFARCIGLLFQVVDDILDV---TKSSQELGKTAGKDLVADKVTYPKLLGID 317
Query: 287 KAMEVAEELRAKAKEELDRFKKYGDNVLPLYSFIDYAADRE 327
K+ E AE+L +A+E+L F + PL + +Y A R+
Sbjct: 318 KSREFAEKLNREAQEQLAEFDP--EKAAPLIALANYIAYRD 356
>sp|P80042|GGPPS_CAPAN Geranylgeranyl pyrophosphate synthase, chloroplastic OS=Capsicum
annuum GN=GGPS1 PE=3 SV=1
Length = 369
Score = 242 bits (617), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 129/301 (42%), Positives = 183/301 (60%), Gaps = 21/301 (6%)
Query: 40 FDLKTYWTTLITEIDQNLEKAITVKYPEQIYESMRYSVLAKGTKRAPPVMCVAACELFGV 99
F+ K Y T +++ L++AI VK P I+E+MRYS+LA G KR P++C+AACEL G
Sbjct: 76 FNFKIYVTEKAISVNKALDEAIIVKEPHVIHEAMRYSLLA-GGKRVRPMLCLAACELVGG 134
Query: 100 NRIAAFPTACALEMVHAASLIHDDLPCMDDDPSRRGQPSNHTVYGVDIAILAGDALFPLG 159
N+ A ACA+EM+H SLIHDDLPCMD+D RRG+P+NH +YG D+A+LAGD+L
Sbjct: 135 NQENAMAAACAVEMIHTMSLIHDDLPCMDNDDLRRGKPTNHKIYGEDVAVLAGDSLLAFA 194
Query: 160 FQHIVSHTPPHLVPEPRVLRVIAEIARAVGSTGMAAGQFLDLEGEPN------LVEFVQE 213
F+HIV+ T V R++ +AE+A+++G+ G+ AGQ D++ N +EF+
Sbjct: 195 FEHIVNSTAG--VTPSRIVGAVAELAKSIGTEGLVAGQVADIKCTGNASVSLETLEFIHV 252
Query: 214 KKFGEMSECSAVCGGFLAGADDDEIQSLRRYGRAVGVLYQVVDDILEAKAQTPRDEEKKK 273
K + E S V G L G + E++ LRR+ R +G+L+QVVDDIL+ T EE K
Sbjct: 253 HKTAALLESSVVLGAILGGGTNVEVEKLRRFARCIGLLFQVVDDILDV---TKSSEELGK 309
Query: 274 KKGK-------SYVAFYGVEKAMEVAEELRAKAKEELDRFKKYGDNVLPLYSFIDYAADR 326
GK +Y G+EKA E A EL +AK++L+ F PL + DY A R
Sbjct: 310 TAGKDLVVDKTTYPKLLGLEKAKEFAAELNREAKQQLEGFDSR--KAAPLIALADYIAYR 367
Query: 327 E 327
+
Sbjct: 368 D 368
>sp|Q9ZU77|GGPP7_ARATH Geranylgeranyl pyrophosphate synthase 7, chloroplastic
OS=Arabidopsis thaliana GN=At2g18620 PE=2 SV=1
Length = 347
Score = 241 bits (616), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 125/305 (40%), Positives = 185/305 (60%), Gaps = 24/305 (7%)
Query: 38 TQFDLKTYWTTLITEIDQNLEKAITVKYPEQIYESMRYSVLAKGTKRAPPVMCVAACELF 97
FD +Y +++ L+ A++++ P +I+E++RYS+LA+G KR PV+C+AACEL
Sbjct: 51 NHFDFTSYMIGKANAVNEALDSAVSLREPIKIHEAIRYSLLARG-KRVRPVLCIAACELV 109
Query: 98 GVNRIAAFPTACALEMVHAASLIHDDLPCMDDDPSRRGQPSNHTVYGVDIAILAGDALFP 157
G A P ACA+EM+H SLIHDDLPCMD+D RRG+P+NH V+G D+A+LAGDAL
Sbjct: 110 GGEESVALPAACAVEMIHTMSLIHDDLPCMDNDDLRRGKPTNHKVFGEDVAVLAGDALIS 169
Query: 158 LGFQHIVSHTPPHLVPEPRVLRVIAEIARAVGSTGMAAGQFLDLEG---EPN-----LVE 209
F+H+ + T V RV+R I E+A+A+GS G+ AGQ +DL + N ++E
Sbjct: 170 FAFEHLATSTA---VSPARVVRAIGELAKAIGSKGLVAGQVVDLTSGGMDQNDVGLEVLE 226
Query: 210 FVQEKKFGEMSECSAVCGGFLAGADDDEIQSLRRYGRAVGVLYQVVDDILEAKAQTPRDE 269
F+ K + E + V G + G D+E++ LRR+ R +G+L+QVVDDIL+ T E
Sbjct: 227 FIHVHKTAVLLEAATVLGAIVGGGSDEEVEKLRRFARCIGLLFQVVDDILDV---TKSSE 283
Query: 270 EKKKKKGKSYVA-------FYGVEKAMEVAEELRAKAKEELDRFKKYGDNVLPLYSFIDY 322
E K GK +A G+EK+ + A++L + A E+L F V PL + +Y
Sbjct: 284 ELGKTAGKDLIADKLTYPKLMGLEKSKDFADKLLSDAHEQLHGFDS--SRVKPLLALANY 341
Query: 323 AADRE 327
A R+
Sbjct: 342 IAKRQ 346
>sp|O04046|GGPP2_ARATH Heterodimeric geranylgeranyl pyrophosphate synthase large subunit 2
OS=Arabidopsis thaliana GN=GGPPS2 PE=1 SV=2
Length = 376
Score = 219 bits (558), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 116/302 (38%), Positives = 177/302 (58%), Gaps = 25/302 (8%)
Query: 40 FDLKTYWTTLITEIDQNLEKAITVKYPEQIYESMRYSVLAKGTKRAPPVMCVAACELFGV 99
F+ Y + +++ LE+AI V P +I+E+MRY++LA G KR P++C+A+CEL G
Sbjct: 83 FEFDPYMMSKAESVNKALEEAIPVGEPLKIHEAMRYAILAAG-KRVRPILCLASCELVGG 141
Query: 100 NRIAAFPTACALEMVHAASLIHDDLPCMDDDPSRRGQPSNHTVYGVDIAILAGDALFPLG 159
AA P ACA+EM+H SLI DDLPCMD+D RRG+P+ H VYG +AIL+G AL L
Sbjct: 142 QENAAMPAACAVEMIHTMSLIKDDLPCMDNDDLRRGKPTTHKVYGEGVAILSGGALLSLA 201
Query: 160 FQHIVSHTPPHLVPEPRVLRVIAEIARAVGSTGMAAGQFLDLEGEP--------NLVEFV 211
F+H+ + + R++ + E+AR++G+ G+ AGQ +D+ E +EF+
Sbjct: 202 FEHMTTAE----ISSERMVWAVRELARSIGTRGLVAGQAMDISSEGLDLNEVGLEHLEFI 257
Query: 212 QEKKFGEMSECSAVCGGFLAGADDDEIQSLRRYGRAVGVLYQVVDDILEAKAQTPRDEEK 271
K + E +AV G + G D+EI+S+R++ R +G+L+QVVDDIL+ +T EE
Sbjct: 258 HVHKTAVLLETAAVLGAIIGGGSDEEIESVRKFARCIGLLFQVVDDILD---ETKSSEEL 314
Query: 272 KKKKGK-------SYVAFYGVEKAMEVAEELRAKAKEELDRFKKYGDNVLPLYSFIDYAA 324
K GK +Y G+EK+ E + L A++ L F + V PL + + A
Sbjct: 315 GKTAGKDQLAGKLTYPKLIGLEKSKEFVKRLTKDARQHLQGFSS--EKVAPLVALTTFIA 372
Query: 325 DR 326
+R
Sbjct: 373 NR 374
>sp|P48368|CRTE_CYAPA Geranylgeranyl pyrophosphate synthase homolog OS=Cyanophora
paradoxa GN=crtE PE=3 SV=1
Length = 300
Score = 218 bits (554), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 117/303 (38%), Positives = 178/303 (58%), Gaps = 22/303 (7%)
Query: 38 TQFDLKTYWTTLITEIDQNLEKAITVKYPEQIYESMRYSVLAKGTKRAPPVMCVAACELF 97
T F+L TY ++ L K+I P IY+S+RYS L+ G KR P++C+A+CEL
Sbjct: 6 TNFNLLTYLYERKEIVEDTLNKSIPRGNPTFIYDSIRYS-LSAGGKRIRPILCLASCELA 64
Query: 98 GVNRIAAFPTACALEMVHAASLIHDDLPCMDDDPSRRGQPSNHTVYGVDIAILAGDALFP 157
G A PTACALEM+H SLIHDDLP MD+D RRG+P+NH +YG D+AILAGDAL
Sbjct: 65 GGTMEMALPTACALEMIHTMSLIHDDLPAMDNDSYRRGKPTNHIIYGEDLAILAGDALLA 124
Query: 158 LGFQHIVSHTPPHLVPEPRVLRVIAEIARAVGSTGMAAGQFLDLEGEPN------LVEFV 211
F+ I + T VP +++VIA++A +V ++G+ GQ +DL E + F+
Sbjct: 125 YAFEFIATQTKN--VPADLIVKVIAQVAHSVTTSGLVGGQIIDLSSEGKSDTTLETLNFI 182
Query: 212 QEKKFGEMSECSAVCGGFLAGADDDEIQSLRRYGRAVGVLYQVVDDILEAKAQTPRDEEK 271
K G + E + + G LAGA + ++ RY + +G+ +Q++DD+L+ +E+
Sbjct: 183 HIHKTGALLEAAVLSGALLAGAKEKDMNRFLRYAQNIGLAFQIIDDVLDI---ISTEEKL 239
Query: 272 KKKKGK-------SYVAFYGVEKAMEVAEELRAKAKEELDRFKKYGDNVLPLYSFIDYAA 324
K GK +Y +F+GVE++++ AE L +AKEE+ F + +PL + D+
Sbjct: 240 GKSIGKDLKTQKATYPSFWGVEESIKQAELLVEEAKEEILYFD---NKAIPLIAIADFIV 296
Query: 325 DRE 327
+R
Sbjct: 297 NRN 299
>sp|Q9LJY2|GGPPA_ARATH Geranylgeranyl pyrophosphate synthase 10, mitochondrial
OS=Arabidopsis thaliana GN=At3g20160 PE=2 SV=1
Length = 344
Score = 217 bits (552), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 129/317 (40%), Positives = 182/317 (57%), Gaps = 29/317 (9%)
Query: 28 PVSAASQLRSTQFDLKTYWTTLITEIDQNLEKAITVKYPE-QIYESMRYSVLAKGTKRAP 86
P+++A+ S F +Y +++ LE+A+ ++ PE +I E+MRY++L+ G KR
Sbjct: 39 PLTSAA---SYDFKFMSYMVNKAKSVNKALEEAVPLREPELKIREAMRYTLLSDG-KRVR 94
Query: 87 PVMCVAACELFGVNRIAAFPTACALEMVHAASLIHDDLPCMDDDPSRRGQPSNHTVYGVD 146
P++C+AACEL G A ACA+EM+HA+SLI DDLPCMD+D RRG+P+NH V+G
Sbjct: 95 PMLCLAACELVGGQESTAMSAACAIEMLHASSLILDDLPCMDNDSLRRGKPTNHIVFGES 154
Query: 147 IAILAGDALFPLGFQHIVSHTPPHLVPEPRVLRVIAEIARAVGSTGMAAGQFLDLEGEP- 205
IAILA AL L Q S T + PE R+L+ + E+ +AV G+ AGQ DL GE
Sbjct: 155 IAILASQALIALAVQKTTSSTFADVPPE-RILKTVQEMVKAV--EGLVAGQQADLAGEGM 211
Query: 206 --------NLVEFVQEKKFGEMSECSAVCGGFLAGADDDEIQSLRRYGRAVGVLYQVVDD 257
+EF+ K + E +AV G + G D+EI+ LR Y R +G+++QVVDD
Sbjct: 212 RFDSDTGLEHLEFIHIHKTAALLEAAAVMGAIMGGGSDEEIERLRSYARCIGLMFQVVDD 271
Query: 258 ILEAKAQTPRDEEKKKKKGKSYVA-------FYGVEKAMEVAEELRAKAKEELDRFKKYG 310
+L+ T EE K GK +A GVEK+ E AE L +A+E L F
Sbjct: 272 VLDV---TKSSEELGKTAGKDLIAGKLTYPRLMGVEKSKEYAERLNIEAREHLLGFDI-- 326
Query: 311 DNVLPLYSFIDYAADRE 327
D V PL S DY +R+
Sbjct: 327 DKVAPLVSLADYIVNRQ 343
>sp|Q9SLG2|GGPP4_ARATH Geranylgeranyl pyrophosphate synthase 4 OS=Arabidopsis thaliana
GN=GGPP4 PE=2 SV=1
Length = 372
Score = 216 bits (551), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 123/302 (40%), Positives = 178/302 (58%), Gaps = 25/302 (8%)
Query: 40 FDLKTYWTTLITEIDQNLEKAITVKYPEQIYESMRYSVLAKGTKRAPPVMCVAACELFGV 99
FD K Y + I++ L++AI + P I+++MRY++LA G KR P++C+AACEL G
Sbjct: 79 FDFKPYMISKAETINRALDEAIPLIEPLNIHKAMRYAILA-GGKRVRPILCLAACELVGG 137
Query: 100 NRIAAFPTACALEMVHAASLIHDDLPCMDDDPSRRGQPSNHTVYGVDIAILAGDALFPLG 159
A ACA+EM+H SLI DDLPCMD+D RRG+P+ H V+G +AIL+G AL L
Sbjct: 138 EERLAIQAACAVEMIHTMSLIKDDLPCMDNDDLRRGKPTTHKVFGESVAILSGGALLALA 197
Query: 160 FQHIVSHTPPHLVPEPRVLRVIAEIARAVGSTGMAAGQFLDL--EG-EPNLV-----EFV 211
F+H+ V +++R + E+A+++G+ G+ AGQ DL EG E N V E++
Sbjct: 198 FEHLTEAD----VSSKKMVRAVKELAKSIGTKGLVAGQAKDLSSEGLEQNDVGLEDLEYI 253
Query: 212 QEKKFGEMSECSAVCGGFLAGADDDEIQSLRRYGRAVGVLYQVVDDILEAKAQTPRDEEK 271
K G + E SAV G + G + EI+ +R + R +G+L+QVVDDIL+ +T EE
Sbjct: 254 HVHKTGSLLEASAVIGAVIGGGTEKEIEKVRNFARCIGLLFQVVDDILD---ETKSSEEL 310
Query: 272 KKKKGKSYVA-------FYGVEKAMEVAEELRAKAKEELDRFKKYGDNVLPLYSFIDYAA 324
K GK VA GVEK+ E E+L+ A+E L F D V PL + ++ A
Sbjct: 311 GKTAGKDKVAGKLTYPKVIGVEKSKEFVEKLKRDAREHLQGFD--SDKVKPLIALTNFIA 368
Query: 325 DR 326
+R
Sbjct: 369 NR 370
>sp|Q9LRR0|GGPP8_ARATH Putative geranylgeranyl pyrophosphate synthase 8, chloroplastic
OS=Arabidopsis thaliana GN=At3g14510 PE=5 SV=2
Length = 361
Score = 206 bits (524), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 126/316 (39%), Positives = 187/316 (59%), Gaps = 23/316 (7%)
Query: 27 LPVSAASQLRSTQFDLKTYWTTLITEIDQNLEKAIT-VKYPEQIYESMRYSVLAKGTKRA 85
+P S ++ FD K Y ++ L+ +I ++ P + E++RYS+LA G KR
Sbjct: 51 IPPQGKSNDHNSAFDFKLYMIRKAESVNAALDVSIVPLREPLTVQEAVRYSLLAGG-KRV 109
Query: 86 PPVMCVAACELFGVNRIAAFPTACALEMVHAASLIHDDLPCMDDDPSRRGQPSNHTVYGV 145
P++C+A CEL G + A ACA+EM+H +SLIHDDLPCMD+ RRG+P+NH V+G
Sbjct: 110 RPLLCIAVCELVGGDEATAMSAACAVEMIHTSSLIHDDLPCMDNADLRRGKPTNHKVFGE 169
Query: 146 DIAILAGDALFPLGFQHIVSHTPPHLVPEPRVLRVIAEIARAVGSTGMAAGQFLDLEGE- 204
D+A+LAGDAL L F+H+ + LV R++R + E+ARA+G+ G+ AGQ +DL E
Sbjct: 170 DMAVLAGDALLALAFEHM-TVVSSGLVASERMIRAVVELARAIGTKGLVAGQVVDLSSER 228
Query: 205 --PNLV-----EFVQEKKFGEMSECSAVCGGFLAGADDDEIQSLRRYGRAVGVLYQVVDD 257
P+ V EF+ K + E +AV G + G ++EI+ LR+Y R +G+L+QVVDD
Sbjct: 229 LNPHDVGLERLEFIHLHKTAALLEAAAVIGAIMGGGTEEEIEKLRKYARCIGLLFQVVDD 288
Query: 258 ILEAKAQTPRDEEKKKKKGK-------SYVAFYGVEKAMEVAEELRAKAKEELDRFKKYG 310
IL+ T EE K GK +Y G+E++ EVAE+L +A+E+L F+
Sbjct: 289 ILDVTKST---EELGKTAGKDVMAGKLTYPRLIGLERSREVAEKLSREAEEQLLGFES-- 343
Query: 311 DNVLPLYSFIDYAADR 326
D PL + Y + R
Sbjct: 344 DKAAPLVALASYISCR 359
>sp|Q9LUD9|GGPP3_ARATH Geranylgeranyl pyrophosphate synthase 3, chloroplastic
OS=Arabidopsis thaliana GN=GGPP3 PE=2 SV=1
Length = 360
Score = 202 bits (515), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 126/305 (41%), Positives = 185/305 (60%), Gaps = 22/305 (7%)
Query: 37 STQFDLKTYWTTLITEIDQNLEKAITVKYPEQIYESMRYSVLAKGTKRAPPVMCVAACEL 96
++ FD K Y ++ L+ ++ ++ P + E++RYS+LA G KR P++C+A CEL
Sbjct: 61 NSAFDFKLYMIRKAESVNAALDVSVPLREPLTVQEAVRYSLLAGG-KRVRPLLCIAVCEL 119
Query: 97 FGVNRIAAFPTACALEMVHAASLIHDDLPCMDDDPSRRGQPSNHTVYGVDIAILAGDALF 156
G + A ACA+EM+H +SLIHDDLPCMD+ RRG+P+NH VYG D+A+LAGDAL
Sbjct: 120 VGGDEATAMSAACAVEMIHTSSLIHDDLPCMDNADLRRGKPTNHKVYGEDMAVLAGDALL 179
Query: 157 PLGFQHIVSHTPPHLVPEPRVLRVIAEIARAVGSTGMAAGQFLDLEGE---PNLV----- 208
L F+H+ + + PE R++R + E+ARA+G+TG+ AGQ +DL E P+ V
Sbjct: 180 ALAFEHMTVVSSGLVAPE-RMIRAVVELARAIGTTGLVAGQMIDLASERLNPDKVGLEHL 238
Query: 209 EFVQEKKFGEMSECSAVCGGFLAGADDDEIQSLRRYGRAVGVLYQVVDDILEAKAQTPRD 268
EF+ K + E +AV G + G ++EI+ LR+Y R +G+L+QVVDDIL+ T
Sbjct: 239 EFIHLHKTAALLEAAAVLGVIMGGGTEEEIEKLRKYARCIGLLFQVVDDILDVTKST--- 295
Query: 269 EEKKKKKGK-------SYVAFYGVEKAMEVAEELRAKAKEELDRFKKYGDNVLPLYSFID 321
EE K GK +Y G+E++ EVAE+LR +A+E+L F PL +
Sbjct: 296 EELGKTAGKDVMAGKLTYPRLIGLERSKEVAEKLRREAEEQLLGFDP--SKAAPLVALAS 353
Query: 322 YAADR 326
Y A R
Sbjct: 354 YIACR 358
>sp|Q9LUE1|GGPP9_ARATH Geranylgeranyl pyrophosphate synthase 9, chloroplastic
OS=Arabidopsis thaliana GN=GGPPS9 PE=1 SV=1
Length = 360
Score = 200 bits (509), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 128/309 (41%), Positives = 184/309 (59%), Gaps = 22/309 (7%)
Query: 33 SQLRSTQFDLKTYWTTLITEIDQNLEKAITVKYPEQIYESMRYSVLAKGTKRAPPVMCVA 92
S ++ FD K Y ++ L+ ++ + P I E++RYS+LA G KR P++C+A
Sbjct: 57 SNDNNSAFDFKLYMIRKAESVNAALDVSVPLLKPLTIQEAVRYSLLAGG-KRVRPLLCIA 115
Query: 93 ACELFGVNRIAAFPTACALEMVHAASLIHDDLPCMDDDPSRRGQPSNHTVYGVDIAILAG 152
ACEL G + A ACA+EM+H +SLIHDDLPCMD+ RRG+P+NH VYG D+A+LAG
Sbjct: 116 ACELVGGDEATAMSAACAVEMIHTSSLIHDDLPCMDNADLRRGKPTNHKVYGEDMAVLAG 175
Query: 153 DALFPLGFQHIVSHTPPHLVPEPRVLRVIAEIARAVGSTGMAAGQFLDLEGE---PNLV- 208
DAL L F+H+ + + PE +++R + E+ARA+G+TG+ AGQ +DL E P+ V
Sbjct: 176 DALLALAFEHMTVVSSGLVAPE-KMIRAVVELARAIGTTGLVAGQMIDLASERLNPDKVG 234
Query: 209 ----EFVQEKKFGEMSECSAVCGGFLAGADDDEIQSLRRYGRAVGVLYQVVDDILEAKAQ 264
EF+ K + E +AV G + G + EI+ LR+Y R +G+L+QVVDDIL+
Sbjct: 235 LEHLEFIHLHKTAALLEAAAVLGVIMGGGTEQEIEKLRKYARCIGLLFQVVDDILDVTKS 294
Query: 265 TPRDEEKKKKKGK-------SYVAFYGVEKAMEVAEELRAKAKEELDRFKKYGDNVLPLY 317
T EE K GK +Y G+E + EVAE+LR +A+E+L F PL
Sbjct: 295 T---EELGKTAGKDVMAGKLTYPRLIGLEGSREVAEKLRREAEEQLLGFDP--SKAAPLV 349
Query: 318 SFIDYAADR 326
+ Y A R
Sbjct: 350 ALASYIACR 358
>sp|Q9LHR4|GGPPC_ARATH Geranylgeranyl pyrophosphate synthase 12, chloroplastic
OS=Arabidopsis thaliana GN=At3g32040 PE=2 SV=1
Length = 360
Score = 196 bits (498), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 127/316 (40%), Positives = 184/316 (58%), Gaps = 22/316 (6%)
Query: 27 LPVSAASQLRSTQFDLKTYWTTLITEIDQNLEKAITVKYPEQIYESMRYSVLAKGTKRAP 86
+P S R+ FD K+Y + L ++ + P I E++RYS+LA G KR
Sbjct: 51 IPPKGKSNDRNFAFDFKSYMIRKAESVSMALNVSVPPQDPLAIQEAVRYSLLAGG-KRVR 109
Query: 87 PVMCVAACELFGVNRIAAFPTACALEMVHAASLIHDDLPCMDDDPSRRGQPSNHTVYGVD 146
P++C+AACEL G + A ACA+EM+H +SLIHDDLPCMDD RRG+P+NH V+G
Sbjct: 110 PLLCIAACELVGGDEATAMSAACAVEMIHTSSLIHDDLPCMDDADLRRGKPTNHKVFGEH 169
Query: 147 IAILAGDALFPLGFQHIVSHTPPHLVPEPRVLRVIAEIARAVGSTGMAAGQFLDLEGEP- 205
+A+LAGDAL L F+H+ + + PE R++R + E+A+A+G+ G+ AGQ DL +
Sbjct: 170 MAVLAGDALLALAFEHMTVVSSGLVAPE-RMIRSVTELAKAIGTKGLVAGQVSDLCSQGL 228
Query: 206 -------NLVEFVQEKKFGEMSECSAVCGGFLAGADDDEIQSLRRYGRAVGVLYQVVDDI 258
+EF+ K + E +AV G + G ++EIQ LR+YGR +G+L+QVVDDI
Sbjct: 229 NPYDVGLERLEFIHLHKTAALLEAAAVLGAIIGGGTEEEIQKLRKYGRCIGLLFQVVDDI 288
Query: 259 LEAKAQTPRDEEKKKKKGK-------SYVAFYGVEKAMEVAEELRAKAKEELDRFKKYGD 311
++ T EE K GK +Y G+E++ EVAE+LR +A E+L F +
Sbjct: 289 IDVTEST---EELGKTAGKDVMARKLTYPRLIGLERSREVAEKLRREAAEQLLGFDS--N 343
Query: 312 NVLPLYSFIDYAADRE 327
V PL + Y A R
Sbjct: 344 KVAPLVALASYIACRH 359
>sp|Q9LIA0|GGPPB_ARATH Geranylgeranyl pyrophosphate synthase 11, chloroplastic
OS=Arabidopsis thaliana GN=At3g29430 PE=2 SV=1
Length = 357
Score = 196 bits (497), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 128/315 (40%), Positives = 187/315 (59%), Gaps = 22/315 (6%)
Query: 27 LPVSAASQLRSTQFDLKTYWTTLITEIDQNLEKAITVKYPEQIYESMRYSVLAKGTKRAP 86
+P S R++ FD K+Y + L ++ ++ P I E++RYS+LA G KR
Sbjct: 48 IPPEGKSNDRNSAFDFKSYMIRKAESVSAALNVSVPLQEPLTIQEAVRYSLLAGG-KRVR 106
Query: 87 PVMCVAACELFGVNRIAAFPTACALEMVHAASLIHDDLPCMDDDPSRRGQPSNHTVYGVD 146
P++C+AACEL G + A ACA+EM+H +SLIHDDLPCMDD RRG+P+NH +G D
Sbjct: 107 PLLCIAACELVGGDEATAMSAACAVEMIHTSSLIHDDLPCMDDADLRRGKPTNHKEFGED 166
Query: 147 IAILAGDALFPLGFQHIVSHTPPHLVPEPRVLRVIAEIARAVGSTGMAAGQFLDL--EG- 203
+A+LAGDAL L F+H+ + + PE R++R + E+A+A+G+ G+ AGQ DL +G
Sbjct: 167 MAVLAGDALLALAFEHMTFVSNGLVAPE-RMIRAVMELAKAIGTKGLVAGQVTDLCSQGL 225
Query: 204 EPNLV-----EFVQEKKFGEMSECSAVCGGFLAGADDDEIQSLRRYGRAVGVLYQVVDDI 258
P+ V EF+ K + E +AV G + G ++EI+ LR+Y R +G+L+QVVDDI
Sbjct: 226 NPDDVGLERLEFIHLHKTAALLEAAAVLGAIMGGGTEEEIEKLRKYARCIGLLFQVVDDI 285
Query: 259 LEAKAQTPRDEEKKKKKGK-------SYVAFYGVEKAMEVAEELRAKAKEELDRFKKYGD 311
L+ T +E K GK +Y G+E++ EVAE+LR +A E+L F D
Sbjct: 286 LDVTEST---KELGKTAGKDVMAGKLTYPRLIGLERSREVAEKLRREAAEQLLGFDS--D 340
Query: 312 NVLPLYSFIDYAADR 326
PL + Y A R
Sbjct: 341 KAAPLVALASYIACR 355
>sp|O22043|GGPP6_ARATH Geranylgeranyl pyrophosphate synthase 6, mitochondrial
OS=Arabidopsis thaliana GN=GGPP6 PE=2 SV=2
Length = 336
Score = 195 bits (496), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 115/277 (41%), Positives = 162/277 (58%), Gaps = 24/277 (8%)
Query: 68 QIYESMRYSVLAKGTKRAPPVMCVAACELFGVNRIAAFPTACALEMVHAASLIHDDLPCM 127
+++++MRY++L G KR P++C+ ACEL G A P ACA+EM+HAASLI DDLPCM
Sbjct: 66 EVHKAMRYTLLP-GGKRVRPMLCLVACELVGGQESTAMPAACAVEMIHAASLILDDLPCM 124
Query: 128 DDDPSRRGQPSNHTVYGVDIAILAGDALFPLGFQHIVSHTPPHLVPEPRVLRVIAEIARA 187
DDD RRG+P+NH V+G +ILA +AL L + ++ T + E RVLR + E+ARA
Sbjct: 125 DDDSLRRGKPTNHKVFGEKTSILASNALRSLAVKQTLASTSLGVTSE-RVLRAVQEMARA 183
Query: 188 VGSTGMAAGQFLDLEGEP----------NLVEFVQEKKFGEMSECSAVCGGFLAGADDDE 237
VG+ G+ AGQ DL GE +E + K + E +AV G + G D+E
Sbjct: 184 VGTEGLVAGQAADLAGERMSFKNEDDELRYLELMHVHKTAVLVEAAAVVGAIMGGGSDEE 243
Query: 238 IQSLRRYGRAVGVLYQVVDDILEAKAQTPRDEEKKKKKGK-------SYVAFYGVEKAME 290
I+ L+ Y R VG+++QV+DD+L+ +T EE K GK +Y GV+ A E
Sbjct: 244 IERLKSYARCVGLMFQVMDDVLD---ETKSSEELGKTAGKDLITGKLTYPKVMGVDNARE 300
Query: 291 VAEELRAKAKEELDRFKKYGDNVLPLYSFIDYAADRE 327
A+ L +A+E L F D V+PL S DY R+
Sbjct: 301 YAKRLNREAQEHLQGFD--SDKVVPLLSLADYIVKRQ 335
>sp|Q08291|ISPA_GEOSE Farnesyl diphosphate synthase OS=Geobacillus stearothermophilus
PE=1 SV=1
Length = 297
Score = 151 bits (382), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 86/233 (36%), Positives = 129/233 (55%), Gaps = 11/233 (4%)
Query: 33 SQLRSTQFDLKTYWTTLITEIDQNLEKAITVKYPEQIYESMRYSVLAKGTKRAPPVMCVA 92
+QL QF L + T + + +E+ ++ P ++ ++M YS L G KR P++ ++
Sbjct: 2 AQLSVEQF-LNEQKQAVETALSRYIER---LEGPAKLKKAMAYS-LEAGGKRIRPLLLLS 56
Query: 93 ACELFGVNRIAAFPTACALEMVHAASLIHDDLPCMDDDPSRRGQPSNHTVYGVDIAILAG 152
G + P ACA+EM+H SLIHDDLP MD+D RRG+P+NH V+G +AILAG
Sbjct: 57 TVRALGKDPAVGLPVACAIEMIHTYSLIHDDLPSMDNDDLRRGKPTNHKVFGEAMAILAG 116
Query: 153 DALFPLGFQHIVSHTPPHLVPEPRVLRVIAEIARAVGSTGMAAGQFLDLEGEPNL----- 207
D L FQ I + P R LR+I +A+A G GM AGQ D+EGE
Sbjct: 117 DGLLTYAFQLITEIDDERIPPSVR-LRLIERLAKAAGPEGMVAGQAADMEGEGKTLTLSE 175
Query: 208 VEFVQEKKFGEMSECSAVCGGFLAGADDDEIQSLRRYGRAVGVLYQVVDDILE 260
+E++ K G+M + S G + GAD + + L + +G+ +Q+ DDIL+
Sbjct: 176 LEYIHRHKTGKMLQYSVHAGALIGGADARQTRELDEFAAHLGLAFQIRDDILD 228
>sp|O66126|ISPA_MICLU Farnesyl diphosphate synthase OS=Micrococcus luteus GN=fps PE=3
SV=1
Length = 291
Score = 145 bits (367), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 90/276 (32%), Positives = 144/276 (52%), Gaps = 20/276 (7%)
Query: 58 EKAITVKYPEQ--IYESMRYSVLAKGTKRAPPVMCVAACELFGVNRIAAFPTACALEMVH 115
E + +P Q ++E++ YS L+ G KR P++ + + G N P ALEM+H
Sbjct: 18 ESLLNKYHPAQSRLHEAINYS-LSAGGKRIRPLLVLTTLDSLGGNAHDGLPFGIALEMIH 76
Query: 116 AASLIHDDLPCMDDDPSRRGQPSNHTVYGVDIAILAGDALFPLGFQHIVSHTPPHLVPEP 175
SLIHDDLP MD+D RRG+ +NH + AILAGDAL FQ I++ L E
Sbjct: 77 TYSLIHDDLPAMDNDDYRRGKLTNHKRFDEATAILAGDALLTDAFQCILN---TQLNAEI 133
Query: 176 RVLRVIAEIARAVGSTGMAAGQFLDLEGEP-----NLVEFVQEKKFGEMSECSAVCGGFL 230
+ L +I ++ A GS GM GQ LD++GE N +E + K GE+ + V G +
Sbjct: 134 K-LSLINLLSTASGSNGMVYGQMLDMQGEHKTLTLNELERIHIHKTGELIRAAIVSAGII 192
Query: 231 AGADDDEIQSLRRYGRAVGVLYQVVDDILEAK------AQTPRDEEKKKKKGKSYVAFYG 284
+D +I+ L G+ VG+++Q+ DDIL+ + +T + K +YV+ G
Sbjct: 193 MNFNDAQIEQLNIIGKNVGLMFQIKDDILDVEGSFENIGKTVGSDLNNDK--STYVSLLG 250
Query: 285 VEKAMEVAEELRAKAKEELDRFKKYGDNVLPLYSFI 320
+E + ++ + + + L + DN+ L ++I
Sbjct: 251 LEASKQLLNDKLTETYDALKTLQPINDNLKTLITYI 286
>sp|Q8K9A0|ISPA_BUCAP Farnesyl diphosphate synthase OS=Buchnera aphidicola subsp.
Schizaphis graminum (strain Sg) GN=ispA PE=3 SV=1
Length = 294
Score = 141 bits (355), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 91/257 (35%), Positives = 139/257 (54%), Gaps = 9/257 (3%)
Query: 69 IYESMRYSVLAKGTKRAPPVMCVAACELFGVNRIAAFPTACALEMVHAASLIHDDLPCMD 128
++ +M+YS L+ G KR + A E F VN A + A+E+VH+ SLIHDDLPC+D
Sbjct: 32 LFRAMKYSTLS-GGKRLRACLIYATGETFQVNIAALDVISAAVELVHSYSLIHDDLPCID 90
Query: 129 DDPSRRGQPSNHTVYGVDIAILAGDALFPLGFQHIVSHTPPHLVPEPRVLRVIAEIARAV 188
+D RRG+ S H YG + A+LAGDAL L F + + P + R L++IAE + A+
Sbjct: 91 NDYFRRGKISCHIKYGENFALLAGDALQGLAFNILSNSNMPGVHDSIR-LKMIAEFSNAI 149
Query: 189 GSTGMAAGQFLDLEGEP---NLVEF--VQEKKFGEMSECSAVCGGFLAGADDDEIQS-LR 242
G +GM GQ LDLE E N+ E + K + CS F + E+ L
Sbjct: 150 GYSGMCIGQMLDLEKERKKINISELEKINLYKTAFLIRCSIRLAYFASNNFSKEVLFILD 209
Query: 243 RYGRAVGVLYQVVDDILEAKAQTPRDEEKKKKKGKSYVAFYGVEKAMEVAEELRAKAKEE 302
++ ++G+ +Q+ DDIL+ K + E K+ K +Y G++K+ +EL +A
Sbjct: 210 KFSVSIGLAFQIQDDILDLKNDIKKLESKRNKTKNTYPLLIGLKKSKIKIKELYKEAFFT 269
Query: 303 LDRFKK-YGDNVLPLYS 318
L+ KK + N+L L +
Sbjct: 270 LEILKKNFNVNILKLLT 286
>sp|O66952|ISPA_AQUAE Farnesyl diphosphate synthase OS=Aquifex aeolicus (strain VF5)
GN=ispA PE=3 SV=1
Length = 262
Score = 140 bits (354), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 79/213 (37%), Positives = 119/213 (55%), Gaps = 3/213 (1%)
Query: 48 TLITEIDQNLEKAITVKYPEQIYESMRYSVLAKGTKRAPPVMCVAACELFGVNRIAAFPT 107
T +I++ L + + + PE++ E+M+Y L KG KR P+ VA G N A
Sbjct: 6 TWKEKIEKRLNEILKPEGPEELIEAMKYYPLQKG-KRIRPLFTVAVASALGGNEDDAITV 64
Query: 108 ACALEMVHAASLIHDDLPCMDDDPSRRGQPSNHTVYGVDIAILAGDALFPLGFQHIVSHT 167
+E++H SLIHDDLPCMD+D RRG P+ H +G +A+LAGDAL F+ +
Sbjct: 65 GSGIELIHNYSLIHDDLPCMDNDVWRRGLPTCHIKFGEAMALLAGDALLTYTFEVLSQRE 124
Query: 168 PPHLVPEPRVLRVIAEIARAVGSTGMAAGQFLDLEGEPNLVEFVQEKKFGEMSECSAVCG 227
+ +L + IA+ GS GM GQ LD++G +L E V KK G + E +CG
Sbjct: 125 NYKTLSCEEILEINKIIAQKAGSNGMVGGQVLDIKGYEDLYE-VSVKKTGALFEACFMCG 183
Query: 228 GFLAGADDDEIQSLRRYGRAVGVLYQVVDDILE 260
+A ++++ + GR VG+L+Q+VDD L+
Sbjct: 184 AVVA-KRREKLKEMESIGRKVGLLFQMVDDYLD 215
>sp|P57537|ISPA_BUCAI Farnesyl diphosphate synthase OS=Buchnera aphidicola subsp.
Acyrthosiphon pisum (strain APS) GN=ispA PE=3 SV=1
Length = 282
Score = 133 bits (334), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 80/246 (32%), Positives = 136/246 (55%), Gaps = 8/246 (3%)
Query: 69 IYESMRYSVLAKGTKRAPPVMCVAACELFGVNRIAAFPTACALEMVHAASLIHDDLPCMD 128
+ ++M+YSV + G+KR + + ++F VN + A+E +H+ SLIHDDLPCMD
Sbjct: 32 LLKAMKYSVFS-GSKRLRSSLIYSTGDVFKVNITTLDVISTAIEFIHSYSLIHDDLPCMD 90
Query: 129 DDPSRRGQPSNHTVYGVDIAILAGDALFPLGFQHIVSHTPPHLVPEPRVLRVIAEIARAV 188
+D RRG+ S H YG ++LAGDAL L F + + P++ R+ ++I+E++ ++
Sbjct: 91 NDNFRRGKISCHVKYGESTSLLAGDALQSLAFNILSNSFMPNVSNLKRI-KMISELSYSI 149
Query: 189 GSTGMAAGQFLDLEGEP---NL--VEFVQEKKFGEMSECSAVCGGFLAGADDDEIQS-LR 242
GS+GM GQ LDLE E NL +E + K + + F + I S L
Sbjct: 150 GSSGMCMGQNLDLEAEKKDVNLSELEIINLYKTSFLMRSAVRLVYFSSNNFSKSILSILD 209
Query: 243 RYGRAVGVLYQVVDDILEAKAQTPRDEEKKKKKGKSYVAFYGVEKAMEVAEELRAKAKEE 302
+ ++G+ +Q+ DDIL+ K + + + KK K +Y G++++ + ++L K+
Sbjct: 210 LFSISIGLAFQIQDDILDFKKDSVKTDNKKIIKKHTYPLIIGLDESRKKIKQLHKKSFLA 269
Query: 303 LDRFKK 308
L+ KK
Sbjct: 270 LNSLKK 275
>sp|P54383|ISPA_BACSU Farnesyl diphosphate synthase OS=Bacillus subtilis (strain 168)
GN=ispA PE=3 SV=2
Length = 296
Score = 132 bits (333), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 87/240 (36%), Positives = 134/240 (55%), Gaps = 16/240 (6%)
Query: 46 WTTLITEIDQNLEKAITV-----KYPEQIYESMRYSVLAKGTKRAPPVMCVAACELFGVN 100
T+ + + + +E ++V P+ + +SM YS+ A G KR P++ +A +G +
Sbjct: 5 LTSFLADRKKTIENQLSVYTEKLDMPDSLKKSMLYSLQA-GGKRLRPLIVLAVLNAYGKS 63
Query: 101 RIAAFPTACALEMVHAASLIHDDLPCMDDDPSRRGQPSNHTVYGVDIAILAGDALFPLGF 160
P CA+EM+H SLIHDDLPCMDDD RRG+P+NH V+G A+LAGD L F
Sbjct: 64 EKDGIPVGCAVEMIHTYSLIHDDLPCMDDDDLRRGKPTNHKVFGEATAVLAGDGLLTESF 123
Query: 161 QHIVSHTPPHLVPEPRVLRVIAEIARAVGSTGMAAGQFLDLEGEPNLV-----EFVQEKK 215
+ I SH + E R LR++ E+ A G+ GM GQ D+E E V E + E+K
Sbjct: 124 KLITSHVSDEVSAEKR-LRLVNELISAAGTEGMVGGQVADMEAENRQVTLEELESIHERK 182
Query: 216 FGEMSECSAVCGGFLAGADDDEIQSLRRYGRAVGVLYQVVDDILEAKAQTPRDEEKKKKK 275
++ + G LA A +++I++LR + +G+ +Q+ DDIL+ + EEK K+
Sbjct: 183 TAKLLGFCVIAGAILADAPEEDIETLRTFSSHIGIGFQIRDDILDLEGS----EEKIGKR 238
>sp|P39464|GGPS_SULAC Geranylgeranyl diphosphate synthase OS=Sulfolobus acidocaldarius
(strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 /
NCIMB 11770) GN=gds PE=1 SV=1
Length = 330
Score = 110 bits (276), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 65/222 (29%), Positives = 118/222 (53%), Gaps = 14/222 (6%)
Query: 44 TYWTTLITEIDQNLEKAITVKYPEQIYESMRYSVLAKGTKRAPPVMCVAACELFGVNRIA 103
Y+ ++ ++ ++ I+ P ++YE+ Y + G KR P++ + +LFG R
Sbjct: 6 NYFNEIVNSVNDIIKSYISGDVP-KLYEA-SYHLFTSGGKRLRPLILTISSDLFGGQRER 63
Query: 104 AFPTACALEMVHAASLIHDDLPCMDDDPSRRGQPSNHTVYGVDIAILAGDALFPLGFQHI 163
A+ A+E++H +L+HDD+ MD D RRG P+ H YG+ +AILAGD L FQ +
Sbjct: 64 AYYAGAAIEVLHTFTLVHDDI--MDQDNIRRGLPTVHVKYGLPLAILAGDLLHAKAFQLL 121
Query: 164 VSHTPPHLVPEPRVLRVIAEIARAVGSTGMAAGQFLDLEGEPNLVEFVQE------KKFG 217
+P +++ R++ ++ GQ +D+E E + QE +K
Sbjct: 122 TQALRG--LPSETIIKAFDIFTRSI--IIISEGQAVDMEFEDRIDIKEQEYLDMISRKTA 177
Query: 218 EMSECSAVCGGFLAGADDDEIQSLRRYGRAVGVLYQVVDDIL 259
+ S+ G +AGA+D++++ + +G +G+ +Q+VDDIL
Sbjct: 178 ALFSASSSIGALIAGANDNDVRLMSDFGTNLGIAFQIVDDIL 219
>sp|P21684|CRTE_PANAN Geranylgeranyl pyrophosphate synthase OS=Pantoea ananas GN=crtE
PE=3 SV=1
Length = 302
Score = 109 bits (273), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 92/293 (31%), Positives = 145/293 (49%), Gaps = 20/293 (6%)
Query: 49 LITEIDQNLEKAITVKYPEQIY-ESMRYSVLAKGTKRAPPVMCVAACEL-FGVNRIAAFP 106
L+ +ID+ L++ + V+ + +MR LA G + P ++ + A +L V+
Sbjct: 19 LLADIDRRLDQLLPVEGERDVVGAAMREGALAPGKRIRPMLLLLTARDLGCAVSHDGLLD 78
Query: 107 TACALEMVHAASLIHDDLPCMDDDPSRRGQPSNHTVYGVDIAILAGDALFPLGFQHIVSH 166
ACA+EMVHAASLI DD+PCMDD RRG+P+ H+ YG +AILA AL F I
Sbjct: 79 LACAVEMVHAASLILDDMPCMDDAKLRRGRPTIHSHYGEHVAILAAVALLSKAFGVIAD- 137
Query: 167 TPPHLVPEPRVLRVIAEIARAVGSTGMAAGQFLDL-EGE-PNLVEFVQEKKFGEMSE--C 222
L P + R ++E++ A+G G+ GQF DL EG+ P E + + S C
Sbjct: 138 -ADGLTPLAKN-RAVSELSNAIGMQGLVQGQFKDLSEGDKPRSAEAILMTNHFKTSTLFC 195
Query: 223 SAV-CGGFLAGADDDEIQSLRRYGRAVGVLYQVVDDILEAKAQTPRDEEKKKKKGKSYVA 281
+++ +A A + L R+ +G +Q++DD+ + T +D + GKS +
Sbjct: 196 ASMQMASIVANASSEARDCLHRFSLDLGQAFQLLDDLTDGMTDTGKD--SNQDAGKSTLV 253
Query: 282 FYGVEKAMEVAEELRAK---AKEELDRFKKYGDNVLPLYSFIDYAADREFSVV 331
+A+E E LR A E L ++G FI D++ + V
Sbjct: 254 NLLGPRAVE--ERLRQHLQLASEHLSAACQHGHAT---QHFIQAWFDKKLAAV 301
>sp|P22939|ISPA_ECOLI Farnesyl diphosphate synthase OS=Escherichia coli (strain K12)
GN=ispA PE=1 SV=1
Length = 299
Score = 109 bits (272), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 93/269 (34%), Positives = 134/269 (49%), Gaps = 12/269 (4%)
Query: 69 IYESMRYSVLAKGTKRAPPVMCVAACELFGVNRIAAFPTACALEMVHAASLIHDDLPCMD 128
+ E+M+Y L G KR P + A +FGV+ A A+E +HA SLIHDDLP MD
Sbjct: 32 VVETMQYGALLGG-KRLRPFLVYATGHMFGVSTNTLDAPAAAVECIHAYSLIHDDLPAMD 90
Query: 129 DDPSRRGQPSNHTVYGVDIAILAGDALFPLGFQHIVSHTPPHLVPEPRVLRVIAEIARAV 188
DD RRG P+ H +G AILAGDAL L F + P + R+ +I+E+A A
Sbjct: 91 DDDLRRGLPTCHVKFGEANAILAGDALQTLAFSILSDADMPEVSDRDRI-SMISELASAS 149
Query: 189 GSTGMAAGQFLDLEGEPNLV-----EFVQEKKFGEMSECSAVCGGFLAGADDDE-IQSLR 242
G GM GQ LDL+ E V E + K G + + G AG + L
Sbjct: 150 GIAGMCGGQALDLDAEGKHVPLDALERIHRHKTGALIRAAVRLGALSAGDKGRRALPVLD 209
Query: 243 RYGRAVGVLYQVVDDILEAKAQTP---RDEEKKKKKGKS-YVAFYGVEKAMEVAEELRAK 298
+Y ++G+ +QV DDIL+ T + + ++ GKS Y A G+E+A + A +L
Sbjct: 210 KYAESIGLAFQVQDDILDVVGDTATLGKRQGADQQLGKSTYPALLGLEQARKKARDLIDD 269
Query: 299 AKEELDRFKKYGDNVLPLYSFIDYAADRE 327
A++ L + + + L + DY R
Sbjct: 270 ARQSLKQLAEQSLDTSALEALADYIIQRN 298
>sp|P45204|ISPA_HAEIN Farnesyl diphosphate synthase OS=Haemophilus influenzae (strain
ATCC 51907 / DSM 11121 / KW20 / Rd) GN=ispA PE=3 SV=1
Length = 295
Score = 106 bits (264), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 90/267 (33%), Positives = 133/267 (49%), Gaps = 24/267 (8%)
Query: 69 IYESMRYSVLAKGTKRAPPVMCVAACELFGVNRIAAFPTACALEMVHAASLIHDDLPCMD 128
+ E+M+Y++L G KR P + A ++ G + A A+E +HA SLIHDDLP MD
Sbjct: 33 LLEAMKYALLLGG-KRVRPFLVYATGQMLGAEKQTLDYAAAAIEAIHAYSLIHDDLPAMD 91
Query: 129 DDPSRRGQPSNHTVYGVDIAILAGDALFPLGFQHIVSHTPPHLVPEPRVLRVIAEIARAV 188
DD RRG P+ H + AILAGDAL F+ I++ TP + + L +I +A+
Sbjct: 92 DDNLRRGHPTCHIQFDEATAILAGDALQSFAFE-ILTKTPN--ISTEQKLALIQILAQGA 148
Query: 189 GSTGMAAGQFLDLEGEPNLV-----EFVQEKKFGEMSECSAVCGGFLAG---ADDDEIQS 240
G GM GQ LDL E + E + K G + +A+ GF+ D QS
Sbjct: 149 GVQGMCLGQSLDLISEHKQISLSELELIHRNKTGALL-IAALKLGFICSPHFTDKRLEQS 207
Query: 241 LRRYGRAVGVLYQVVDDILEAKAQTPRDEEKKKKKG-------KSYVAFYGVEKAMEVAE 293
L +Y A+G+ +QV DDIL+ + + E K+ G +Y G+ A + A+
Sbjct: 208 LTQYAEAIGLAFQVQDDILDIEGDSA---EIGKQVGADLDLDKSTYPKLLGLSGAKQKAQ 264
Query: 294 ELRAKAKEELDRFKKYGDNVLPLYSFI 320
+L A EL++ + V L FI
Sbjct: 265 DLYQSALSELEKI-PFDTTVRALAEFI 290
>sp|Q58270|IDSA_METJA Short chain isoprenyl diphosphate synthase OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=idsA PE=3 SV=1
Length = 327
Score = 104 bits (260), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 67/224 (29%), Positives = 120/224 (53%), Gaps = 23/224 (10%)
Query: 45 YWTTLITEIDQNLEKAITVKYPEQIYESMRYSVLAKGTKRAPPVMCVAACELFGVNRIAA 104
+ ++ +ID+ L+ V +++Y + ++ + A G KR P + V L +
Sbjct: 13 FDKNILQKIDEELK--TYVDKDDKLYNASKHLLFA-GGKRIRPYLTVVTYMLKKDDIEEV 69
Query: 105 FPTACALEMVHAASLIHDDLPCMDDDPSRRGQPSNHTVYGVDIAILAGDALFPLGFQ--- 161
P A A+E++H +LIHDD+ MD+D RRG+P+ H VYG +AILAGD L+ F+
Sbjct: 70 LPAAAAVELIHNYTLIHDDI--MDNDDERRGKPTVHVVYGEPMAILAGDLLYAKAFEAVS 127
Query: 162 HIVSHTPPHLVPEPRVLRVIAEIARAVGSTGMAAGQFLDLEGE---PNLVEFVQ--EKKF 216
I + H VL+++++ + GQ +D+E E P + E++ KK
Sbjct: 128 RIKDNKKAH-----EVLKILSK-----ACVEVCEGQAMDMEFENYYPTMEEYLDMIRKKT 177
Query: 217 GEMSECSAVCGGFLAGADDDEIQSLRRYGRAVGVLYQVVDDILE 260
G + E S G +A +++E ++L+ Y + +G+ +Q+ DD+L+
Sbjct: 178 GALLEASVGIGAVMADCNEEEREALKEYAKRIGLTFQIQDDVLD 221
>sp|P95999|GGPS_SULSO Geranylgeranyl diphosphate synthase OS=Sulfolobus solfataricus
(strain ATCC 35092 / DSM 1617 / JCM 11322 / P2) GN=gds
PE=3 SV=2
Length = 332
Score = 103 bits (258), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 64/225 (28%), Positives = 117/225 (52%), Gaps = 14/225 (6%)
Query: 41 DLKTYWTTLITEIDQNLEKAITVKYPEQIYESMRYSVLAKGTKRAPPVMCVAACELFGVN 100
DL Y+ ++ ++ ++ + + + E + + G KR P++ V++ +L G +
Sbjct: 5 DLSLYFNEIVNNVNFRIKNFVKSNF--KTLEEASFHLFTAGGKRLRPLVLVSSSDLIGGD 62
Query: 101 RIAAFPTACALEMVHAASLIHDDLPCMDDDPSRRGQPSNHTVYGVDIAILAGDALFPLGF 160
R A+ A A+E++H +L+HDD+ MD+D RRG P+ H +G +AILAGD L F
Sbjct: 63 RERAYKAAAAVEILHNFTLVHDDI--MDNDGLRRGLPTVHVKWGEPMAILAGDYLHAKAF 120
Query: 161 QHIVSHTPPHLVPEPRVLRVIAEIARAVGSTGMAAGQFLDLEGEPNL----VEFVQ--EK 214
+ + + + + + ++ ++ GQ +D+ E L E++Q +
Sbjct: 121 EAL--NEALKGLDGNTFYKAFSIFITSIEI--ISEGQAMDMSFENRLDVTEEEYIQMIKG 176
Query: 215 KFGEMSECSAVCGGFLAGADDDEIQSLRRYGRAVGVLYQVVDDIL 259
K + CSA GG + A+DD ++ L YG +G+ +Q+VDDIL
Sbjct: 177 KTAMLFSCSAALGGIINKANDDVVKKLTEYGLNLGISFQIVDDIL 221
>sp|Q53479|IDSA_METTM Short chain isoprenyl diphosphate synthase OS=Methanothermobacter
marburgensis (strain DSM 2133 / 14651 / NBRC 100331 /
OCM 82 / Marburg) GN=idsA PE=1 SV=3
Length = 325
Score = 101 bits (251), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 69/216 (31%), Positives = 112/216 (51%), Gaps = 22/216 (10%)
Query: 54 DQNLEKAITVKYPEQIYESMRYSVLAKGTKRAPPVMCVAACELFGVNRIAAFPTACALEM 113
D+ + + I+ P+ + ++ + + A G K+ P + + +CE G N A A A+E+
Sbjct: 16 DKRIMECISDITPDTLLKASEHLITA-GGKKIRPSLALLSCEAVGGNPEDAAGVAAAIEL 74
Query: 114 VHAASLIHDDLPCMDDDPSRRGQPSNHTVYGVDIAILAGDALFPLGFQHIVSHTPPHLVP 173
+H SLIHDD+ MDDD RRG+PS H ++G +AILAGD LF F+ ++ +
Sbjct: 75 IHTFSLIHDDI--MDDDEMRRGEPSVHVIWGEPMAILAGDVLFSKAFEAVIRNGDSE--- 129
Query: 174 EPRVLRVIAEIARAVGS-TGMAAGQFLDLEGEPNLVEFVQEKKFGEM--------SECSA 224
RV +A V S + GQ LD+ E L V E ++ EM +
Sbjct: 130 -----RVKDALAVVVDSCVKICEGQALDMGFEERL--DVTEDEYMEMIYKKTAALIAAAT 182
Query: 225 VCGGFLAGADDDEIQSLRRYGRAVGVLYQVVDDILE 260
G + GA + E+++L YG+ +G+ +Q+ DD L+
Sbjct: 183 KAGAIMGGASEREVEALEDYGKFIGLAFQIHDDYLD 218
>sp|O26156|IDSA_METTH Short chain isoprenyl diphosphate synthase OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=idsA PE=3 SV=1
Length = 325
Score = 99.8 bits (247), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 85/273 (31%), Positives = 132/273 (48%), Gaps = 31/273 (11%)
Query: 54 DQNLEKAITVKYPEQIYESMRYSVLAKGTKRAPPVMCVAACELFGVNRIAAFPTACALEM 113
D+ + ++I+ PE + + + + A G K+ P + + + E G + A A A+E+
Sbjct: 16 DERIRESISDITPETLLRASEHLITA-GGKKIRPSLALLSSEAVGGDPGDAAGVAAAIEL 74
Query: 114 VHAASLIHDDLPCMDDDPSRRGQPSNHTVYGVDIAILAGDALFPLGFQHIVSHTPPHLVP 173
+H SLIHDD+ MDDD RRG+P+ H ++G +AILAGD LF F+ ++ + +V
Sbjct: 75 IHTFSLIHDDI--MDDDEIRRGEPAVHVLWGEPMAILAGDVLFSKAFEAVIRNGDSEMVK 132
Query: 174 EPRVLRVIAEIARAVGSTGMAAGQFLDLEGEPNLVEFVQEKKFGEM--------SECSAV 225
E L V+ + + GQ LD+ E L V E+++ EM +
Sbjct: 133 EA--LAVVVD-----SCVKICEGQALDMGFEERL--DVTEEEYMEMIYKKTAALIAAATK 183
Query: 226 CGGFLAGADDDEIQSLRRYGRAVGVLYQVVDDILEAKAQTPRDEEKKKKKGKSYVA---- 281
G + G EI +L YGR +G+ +Q+ DD L+ + DEE K S +A
Sbjct: 184 AGAIMGGGSPQEIAALEDYGRCIGLAFQIHDDYLDVVS----DEESLGKPVGSDIAEGKM 239
Query: 282 FYGVEKAMEVAEELRAKAKEELDRFKKYGDNVL 314
V KA+E A E K +E L GD L
Sbjct: 240 TLMVVKALERASE---KDRERLISILGSGDEKL 269
>sp|P22873|CRTE_ESCVU Geranylgeranyl pyrophosphate synthase OS=Escherichia vulneris
GN=crtE PE=3 SV=1
Length = 307
Score = 97.1 bits (240), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 72/247 (29%), Positives = 115/247 (46%), Gaps = 23/247 (9%)
Query: 72 SMRYSVLAKGTKRAPPVMCVAACELFGVNRIAAFPT----ACALEMVHAASLIHDDLPCM 127
+MR V+A G + P +M +AA +L + PT ACA+E+ H ASL+ DD+PCM
Sbjct: 42 AMREGVMAPGKRIRPLLMLLAARDL---RYQGSMPTLLDLACAVELTHTASLMLDDMPCM 98
Query: 128 DDDPSRRGQPSNHTVYGVDIAILAGDALFPLGFQHIVSHTPPHLVPEPRVLRVIAEIARA 187
D+ RRGQP+ H +G +AILA L F I + +P R + + E++ A
Sbjct: 99 DNAELRRGQPTTHKKFGESVAILASVGLLSKAFGLIAATGD---LPGERRAQAVNELSTA 155
Query: 188 VGSTGMAAGQFLD-----LEGEPNLVEFVQEKKFGEMSECSAVCGGFLAGADDDEIQSLR 242
VG G+ GQF D L+ P+ + K G + + + ++L
Sbjct: 156 VGVQGLVLGQFRDLNDAALDRTPDAILSTNHLKTGILFSAMLQIVAIASASSPSTRETLH 215
Query: 243 RYGRAVGVLYQVVDDILEAKAQTPRDEEKKKKKGKSYVAFYGVEKAMEVAEELRAKAKEE 302
+ G +Q++DD+ + +T +D K K + V G + A R K +E
Sbjct: 216 AFALDFGQAFQLLDDLRDDHPETGKDRNKDAGK-STLVNRLGADAA-------RQKLREH 267
Query: 303 LDRFKKY 309
+D K+
Sbjct: 268 IDSADKH 274
>sp|P55539|ISPA_RHISN Probable farnesyl diphosphate synthase OS=Rhizobium sp. (strain
NGR234) GN=NGR_a02750 PE=3 SV=1
Length = 332
Score = 93.6 bits (231), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 72/209 (34%), Positives = 104/209 (49%), Gaps = 21/209 (10%)
Query: 110 ALEMVHAASLIHDDLPCMDDDPSRRGQPSNHTVYGVDIAILAGDALFPLGFQHIVSHTPP 169
A+EM+HA +L+HDDLP MDDD RRG P+ H +G AIL GDAL F + S P
Sbjct: 102 AIEMMHACTLVHDDLPAMDDDVLRRGLPTVHVKFGEATAILVGDALQAHAFLTLASLDAP 161
Query: 170 HLVPEPRVLRVIAEIARAVGSTGMAAGQFLDLEGEPNLVEF-----VQEKKFGEMSECSA 224
+ R+ ++ E+A+AV + G A GQ +DL VE + K G + S
Sbjct: 162 ---GDNRI-ALVRELAQAVSAEGAAGGQAMDLSLVGKHVELDRIVAMHRMKCGALVRASV 217
Query: 225 VCGGFLAGADDDEIQS----LRRYGRAVGVLYQVVDDILEAKA------QTPRDEEKKKK 274
G A A+D + L Y G+ QVVDDIL+A A +TP + +K
Sbjct: 218 RMGALCAIAEDAADATLYCALDHYSACFGLALQVVDDILDATADTATLGKTPGKDAAAQK 277
Query: 275 KGKSYVAFYGVEKAMEVAEELRAKAKEEL 303
+ + G++ A + A +L +A E +
Sbjct: 278 --PTCASIMGLQAARQFALDLLCEAGEAI 304
>sp|Q8PW34|GGPP_METMA Geranylgeranyl diphosphate synthase OS=Methanosarcina mazei (strain
ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM
88) GN=MM_1767 PE=3 SV=1
Length = 324
Score = 92.8 bits (229), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 76/220 (34%), Positives = 118/220 (53%), Gaps = 17/220 (7%)
Query: 51 TEIDQNLEKAITVKYPEQIYESMRYSVLAKGTKRAPPVMCVAACELFGVNRIAAFPTACA 110
+ +D +++ + V PE++Y++ RY V A G KR P + + A E G N + P A A
Sbjct: 15 SHVDAAIDELLPVTRPEELYKASRYLVDAGG-KRLRPAVLILAAEAVGSNLRSVLPAAVA 73
Query: 111 LEMVHAASLIHDDLPCMDDDPSRRGQPSNHTVYGVDIAILAGDALFPLGFQHIVSHTPPH 170
+E+VH +LIH MD D RRG P+ H +G AILAGD L+ F+ I+S
Sbjct: 74 VELVHNFTLIH--DDIMDRDDIRRGMPAVHVKWGEAGAILAGDTLYSKAFE-ILSKVENE 130
Query: 171 LVPEPRVLRVIAEIARAVGSTGMAAGQFLDLE-------GEPNLVEFVQEKKFGEMSECS 223
V RVL+ + +++ T + GQ+LD++ E +E V EKK + +
Sbjct: 131 PV---RVLKCMDVLSKT--CTEICEGQWLDMDFETRKKVTESEYLEMV-EKKTSVLYAAA 184
Query: 224 AVCGGFLAGADDDEIQSLRRYGRAVGVLYQVVDDILEAKA 263
A G L GA D+ ++L YGR +G+ +Q+ DD+L+ A
Sbjct: 185 AKIGALLGGASDEVAEALSEYGRLIGIGFQMYDDVLDMTA 224
>sp|P0AD58|ISPB_SHIFL Octaprenyl-diphosphate synthase OS=Shigella flexneri GN=ispB PE=3
SV=1
Length = 323
Score = 90.5 bits (223), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 59/202 (29%), Positives = 102/202 (50%), Gaps = 19/202 (9%)
Query: 68 QIYESMRYSVLAKGTKRAPPVMCVAACELFGVNRIAAFPTACALEMVHAASLIHDDLPCM 127
Q+ + Y +++ G KR P++ V A G A A +E +H A+L+HDD+ +
Sbjct: 30 QLINQLGYYIVSGGGKRIRPMIAVLAARAVGYEGNAHVTIAALIEFIHTATLLHDDV--V 87
Query: 128 DDDPSRRGQPSNHTVYGVDIAILAGDALFPLGFQHIVSHTPPHLVPEPRVLRVIAEIARA 187
D+ RRG+ + + +G ++L GD ++ FQ + S + +VL V++E
Sbjct: 88 DESDMRRGKATANAAFGNAASVLVGDFIYTRAFQMMTS------LGSLKVLEVMSEAVNV 141
Query: 188 VGSTGMAAGQFLDLEG--EPNLVE----FVQEKKFGEMSECSAVCGGFLAGADDDEIQSL 241
+ A G+ L L +P++ E V K + E +A C G LAG +E + L
Sbjct: 142 I-----AEGEVLQLMNVNDPDITEENYMRVIYSKTARLFEAAAQCSGILAGCTPEEEKGL 196
Query: 242 RRYGRAVGVLYQVVDDILEAKA 263
+ YGR +G +Q++DD+L+ A
Sbjct: 197 QDYGRYLGTAFQLIDDLLDYNA 218
>sp|P0AD57|ISPB_ECOLI Octaprenyl-diphosphate synthase OS=Escherichia coli (strain K12)
GN=ispB PE=1 SV=1
Length = 323
Score = 90.5 bits (223), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 59/202 (29%), Positives = 102/202 (50%), Gaps = 19/202 (9%)
Query: 68 QIYESMRYSVLAKGTKRAPPVMCVAACELFGVNRIAAFPTACALEMVHAASLIHDDLPCM 127
Q+ + Y +++ G KR P++ V A G A A +E +H A+L+HDD+ +
Sbjct: 30 QLINQLGYYIVSGGGKRIRPMIAVLAARAVGYEGNAHVTIAALIEFIHTATLLHDDV--V 87
Query: 128 DDDPSRRGQPSNHTVYGVDIAILAGDALFPLGFQHIVSHTPPHLVPEPRVLRVIAEIARA 187
D+ RRG+ + + +G ++L GD ++ FQ + S + +VL V++E
Sbjct: 88 DESDMRRGKATANAAFGNAASVLVGDFIYTRAFQMMTS------LGSLKVLEVMSEAVNV 141
Query: 188 VGSTGMAAGQFLDLEG--EPNLVE----FVQEKKFGEMSECSAVCGGFLAGADDDEIQSL 241
+ A G+ L L +P++ E V K + E +A C G LAG +E + L
Sbjct: 142 I-----AEGEVLQLMNVNDPDITEENYMRVIYSKTARLFEAAAQCSGILAGCTPEEEKGL 196
Query: 242 RRYGRAVGVLYQVVDDILEAKA 263
+ YGR +G +Q++DD+L+ A
Sbjct: 197 QDYGRYLGTAFQLIDDLLDYNA 218
>sp|P54976|CRTE_RHOS4 Geranylgeranyl pyrophosphate synthase OS=Rhodobacter sphaeroides
(strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158)
GN=crtE PE=3 SV=3
Length = 288
Score = 90.5 bits (223), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 72/233 (30%), Positives = 117/233 (50%), Gaps = 22/233 (9%)
Query: 66 PEQIYESMRYSVLAKGTKRAPPVMCVAACELFGVNRIA-AFPTACALEMVHAASLIHDDL 124
P ++ ++ Y+V G R P + ++ G +R A + A ALE++H ASL+HDDL
Sbjct: 24 PSKLATALDYAV-TPGGARIRPTLLLSVATACGDDRPALSDAAAVALELIHCASLVHDDL 82
Query: 125 PCMDDDPSRRGQPSNHTVYGVDIAILAGDALFPLGFQHIVSHTPPHLVPEPRVLRVIAEI 184
PC DD RRG+P+ H Y +AIL GD+L +GF+ + P+ R L+++ +
Sbjct: 83 PCFDDAEIRRGKPTVHRAYSEPLAILTGDSLIVMGFEVLARAAADQ--PQ-RALQLVTAL 139
Query: 185 ARAVG-STGMAAGQFLDLEGEPNLVEFVQEKK---FGEMSECSAVCGGFLAGADDDEIQS 240
A G G+ AGQ + E + NL + + K F ++ A+ G+ E +
Sbjct: 140 AVRTGMPMGICAGQGWESESQINLSAYHRAKTGALFIAATQMGAIAAGY-------EAEP 192
Query: 241 LRRYGRAVGVLYQVVDDILEA--KAQT---PRDEEKKKKKGKSYVAFYGVEKA 288
G +G +QV DD+ +A A+T P +++ + + V YGVE A
Sbjct: 193 WEELGARIGEAFQVADDLRDALCDAETLGKPAGQDEIHAR-PNAVREYGVEGA 244
>sp|Q45220|ISPA_BRAJA Probable farnesyl diphosphate synthase OS=Bradyrhizobium japonicum
(strain USDA 110) GN=fppS PE=3 SV=1
Length = 332
Score = 90.1 bits (222), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 71/222 (31%), Positives = 105/222 (47%), Gaps = 31/222 (13%)
Query: 110 ALEMVHAASLIHDDLPCMDDDPSRRGQPSNHTVYGVDIAILAGDALFPLGFQHIVSHTPP 169
A+EM+HA +L+HDDLP MDDD RRG P+ H +G AIL GDAL F + S P
Sbjct: 102 AIEMMHACTLVHDDLPAMDDDVLRRGLPTVHVKFGEATAILVGDALQAHAFLTLASLNAP 161
Query: 170 HLVPEPRVLRVIAEIARAVGSTGMAAGQFLDLEGEPNLVEF-----VQEKKFGEMSECS- 223
P + ++ E+A+AV + G A GQ +DL VE + K G + S
Sbjct: 162 GDSP----IALVRELAQAVSAEGAAGGQAIDLSLVGKHVELDRIVAMHRMKSGALVRASV 217
Query: 224 ---AVCGGFLAGADDDEIQSLRRYGRAVGVLYQVVDDILEAKA------QTPRDEEKKKK 274
A+C + A +L Y G+ QV+DDIL+ A +TP + +K
Sbjct: 218 RMGALCAVGVNAAHAALYCALDHYSACFGLALQVIDDILDVTADTAALGKTPGKDAAAQK 277
Query: 275 KGKSYVAFYGVEKAMEVAEELRAKAKEELDRFKKYGDNVLPL 316
+ + G+++A + A LD + G+ + PL
Sbjct: 278 --PTCASIMGLQEARQFA----------LDLLRDAGEAIAPL 307
>sp|P0A5H8|EFPP_MYCTU (2E,6E)-farnesyl diphosphate synthase OS=Mycobacterium tuberculosis
GN=Rv3398c PE=1 SV=1
Length = 359
Score = 88.6 bits (218), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 61/175 (34%), Positives = 93/175 (53%), Gaps = 8/175 (4%)
Query: 87 PVMCVAACELFGVNRIAAFPTACALEMVHAASLIHDDLPCMDDDPSRRGQPSNHTVYGVD 146
P + A E G + +A P A ++E+VH SL+HDDL MD D RR +P+ ++G
Sbjct: 77 PALVFVAAEAAGADPHSAIPGAVSVELVHNFSLVHDDL--MDRDEHRRHRPTVWALWGDA 134
Query: 147 IAILAGDALFPLGFQHIVSHTPPHLVPEPRVLRVIAEIARAVGSTGMAAGQFLDLEGEPN 206
+A+LAGDA+ L + ++ PH+ LR I+E R + G AA + +
Sbjct: 135 MALLAGDAMLSLAHEVLLDCDSPHVGA---ALRAISEATREL-IRGQAADTAFESRTDVA 190
Query: 207 LVEFVQ--EKKFGEMSECSAVCGGFLAGADDDEIQSLRRYGRAVGVLYQVVDDIL 259
L E ++ E K + SA G LAGA ++L YGR +G+ +Q+VDD+L
Sbjct: 191 LDECLKMAEGKTAALMAASAEVGALLAGAPRSVREALVAYGRHIGLAFQLVDDLL 245
>sp|P0A5H9|EFPP_MYCBO (2E,6E)-farnesyl diphosphate synthase OS=Mycobacterium bovis
(strain ATCC BAA-935 / AF2122/97) GN=Mb3431c PE=3 SV=1
Length = 359
Score = 88.6 bits (218), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 61/175 (34%), Positives = 93/175 (53%), Gaps = 8/175 (4%)
Query: 87 PVMCVAACELFGVNRIAAFPTACALEMVHAASLIHDDLPCMDDDPSRRGQPSNHTVYGVD 146
P + A E G + +A P A ++E+VH SL+HDDL MD D RR +P+ ++G
Sbjct: 77 PALVFVAAEAAGADPHSAIPGAVSVELVHNFSLVHDDL--MDRDEHRRHRPTVWALWGDA 134
Query: 147 IAILAGDALFPLGFQHIVSHTPPHLVPEPRVLRVIAEIARAVGSTGMAAGQFLDLEGEPN 206
+A+LAGDA+ L + ++ PH+ LR I+E R + G AA + +
Sbjct: 135 MALLAGDAMLSLAHEVLLDCDSPHVGA---ALRAISEATREL-IRGQAADTAFESRTDVA 190
Query: 207 LVEFVQ--EKKFGEMSECSAVCGGFLAGADDDEIQSLRRYGRAVGVLYQVVDDIL 259
L E ++ E K + SA G LAGA ++L YGR +G+ +Q+VDD+L
Sbjct: 191 LDECLKMAEGKTAALMAASAEVGALLAGAPRSVREALVAYGRHIGLAFQLVDDLL 245
>sp|P17060|CRTE_RHOCB Geranylgeranyl pyrophosphate synthase OS=Rhodobacter capsulatus
(strain ATCC BAA-309 / NBRC 16581 / SB1003) GN=crtE PE=3
SV=1
Length = 289
Score = 83.6 bits (205), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 66/225 (29%), Positives = 107/225 (47%), Gaps = 24/225 (10%)
Query: 48 TLITEIDQNLEKAITVKYPEQIYES-------MRYSVLAKGTKRAPPVMCVAACELFGVN 100
+L I+ L KA++ PE + ES + Y V G + P ++ A
Sbjct: 2 SLDKRIESALVKALS---PEALGESPPLLAAALPYGVFPGGARIRPTILVSVALACGDDC 58
Query: 101 RIAAFPTACALEMVHAASLIHDDLPCMDDDPSRRGQPSNHTVYGVDIAILAGDALFPLGF 160
A ALE++H ASL+HDDLP D+ RRG+PS H Y +A+LAGD+L GF
Sbjct: 59 PAVTDAAAVALELMHCASLVHDDLPAFDNADIRRGKPSLHKAYNEPLAVLAGDSLLIRGF 118
Query: 161 QHIVSHTPPHLVPEPRVLRVIAEIARAVGS-TGMAAGQFLDLEGEPNLVEFVQEKK---F 216
+ + V R L++I+++ + G+ G+ AGQ + E + +L + Q K F
Sbjct: 119 EVLADVGA---VNPDRALKLISKLGQLSGARGGICAGQAWESESKVDLAAYHQAKTGALF 175
Query: 217 GEMSECSAVCGGFLAGADDDEIQSLRRYGRAVGVLYQVVDDILEA 261
++ A+ G+ E + G +G +Q+ DD+ +A
Sbjct: 176 IAATQMGAIAAGY-------EAEPWFDLGMRIGSAFQIADDLKDA 213
>sp|Q3IPL1|GFPS_NATPD Geranylfarnesyl diphosphate synthase OS=Natronomonas pharaonis
(strain DSM 2160 / ATCC 35678) GN=idsA3 PE=1 SV=1
Length = 341
Score = 82.8 bits (203), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 70/245 (28%), Positives = 125/245 (51%), Gaps = 35/245 (14%)
Query: 53 IDQNLEKAITVKYPEQIYESMRYSVLAKGTKRAPPVMCVAACELFGVNRIAA----FPT- 107
+++ + + + V+ PE++Y + RY + A G + P ++ +AA L V ++A FP+
Sbjct: 18 VNEAVSEQLPVQKPERLYSASRYLLDAGGKRLRPTILLLAAESLADVEPLSADYRQFPSL 77
Query: 108 ----------ACALEMVHAASLIHDDLPCMDDDPSRRGQPSNHTVYGVDIAILAGDALFP 157
A ++E++ + +LIHDD+ D RRG P+ H Y ++ AILAGD L+
Sbjct: 78 PGDEVDVLSAAVSIEVIQSFTLIHDDIMDDD--DLRRGVPAVHREYDLETAILAGDTLYS 135
Query: 158 LGFQHIVSHTPPHLVPEPRVLRVIAEIARAVGSTGMAAGQFLDLEGEPNLVEFVQEKKFG 217
F++++ P R + + E+A T + GQ LD++ E V +++
Sbjct: 136 KAFEYMLDTGAPA----ERSVEALDELATTC--TEICEGQALDVDFENR--SDVTTEEYL 187
Query: 218 EMSE--------CSAVCGGFLAGADDDEIQSLRRYGRAVGVLYQVVDDILEAKAQTPRDE 269
EM E +A L G+DD+ +++L YG +G +Q+ DD+L+ A P DE
Sbjct: 188 EMVEFKTAVLYAAAASIPAILLGSDDETVEALHGYGLDIGRAFQIQDDLLDLTA--PSDE 245
Query: 270 EKKKK 274
K++
Sbjct: 246 LGKQR 250
>sp|Q8PYS1|GFPS_METMA Geranylfarnesyl diphosphate synthase OS=Methanosarcina mazei
(strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833
/ OCM 88) GN=MM_0789 PE=1 SV=1
Length = 295
Score = 81.3 bits (199), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 73/248 (29%), Positives = 112/248 (45%), Gaps = 27/248 (10%)
Query: 73 MRYSVLAKGTKRAPPVMCVAACELFGVNRIAAFPTACALEMVHAASLIHDDLPCMDDDPS 132
M V G KR P++ + E+ + + A A+EM+H+ASLIHDDL +D
Sbjct: 41 MVEHVCHSGGKRIRPIILLLVSEICSGSYSRSLNAALAVEMMHSASLIHDDL--LDQGLV 98
Query: 133 RRGQPSNHTVYGVDIAILAGDALFPLGFQHIVSHTPPHLVPEPRVLRVIAEIARAVGSTG 192
RR PS +G A+L GD L I P +VI + +A
Sbjct: 99 RRNLPSAPEKFGPSGALLCGDYLIAKSIAFI----------SPYGEKVIQDFGKA--GMD 146
Query: 193 MAAGQFLDLE------GEPNLVEFVQEKKFGEMSECSAVCGGFLAGADDDEIQSLRRYGR 246
MA G+ LDL+ GE + + + KK + SA G + GA+++ + +G
Sbjct: 147 MAEGEVLDLKLEDESFGENDYFKCIY-KKTASLFAISASIGAYTGGAEEELAERFSHFGN 205
Query: 247 AVGVLYQVVDDILEAKAQTPRDEEKKKKKG------KSYVAFYGVEKAMEVAEELRAKAK 300
A+G YQ+VDDILE E K + KS ++K+++ + A AK
Sbjct: 206 ALGTAYQIVDDILEFLEVVEGKESKFTSETLPHIYMKSTSKEEALKKSIDCVKLHVAAAK 265
Query: 301 EELDRFKK 308
E L+ F++
Sbjct: 266 ETLETFRE 273
>sp|Q75HZ9|SPS2_ORYSJ Solanesyl-diphosphate synthase 2, chloroplastic OS=Oryza sativa
subsp. japonica GN=SPS2 PE=1 SV=2
Length = 403
Score = 79.0 bits (193), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 67/268 (25%), Positives = 119/268 (44%), Gaps = 30/268 (11%)
Query: 12 PCVCL---PRKFPVRCSSLPVSAASQLRSTQF--------DLKTYWTTLITEIDQNLEKA 60
PCVC P + + +P A S R+T L + + +++ NL+
Sbjct: 43 PCVCFVASPSQPGLAAVDVPAEAISSARTTTMIPERISVSSLLEVVSDDLLKLNNNLKSL 102
Query: 61 ITVKYPEQIYESMRYSVLAKGTKRAPPVMCV----AACELFGVNRIAAFPTACA--LEMV 114
+ + P + S + G KR P + A EL G+ + A +EM+
Sbjct: 103 VGAENP--VLVSAAEQIFGAGGKRLRPALVFLVSRATAELAGLLELTTEHQRLAEIIEMI 160
Query: 115 HAASLIHDDLPCMDDDPSRRGQPSNHTVYGVDIAILAGDALFPLGFQHIVSHTPPHLVPE 174
H ASLIHDD+ +DD RRG+ + H +YG +A+LAGD +F + + +
Sbjct: 161 HTASLIHDDV--IDDSGMRRGKETIHQLYGTRVAVLAGDFMFAQSSWFLAN------LEN 212
Query: 175 PRVLRVIAEIARAVGSTGMAAGQFLDLEGEPNLVEFVQEK--KFGEMSECSAVCGGFLAG 232
V+++I+++ + S + L + + L +++ + K + S +G
Sbjct: 213 IEVIKLISQVIKDFASGEIKQASTL-FDCDVTLDDYLLKSYYKTASLLASSTRSAAIFSG 271
Query: 233 ADDDEIQSLRRYGRAVGVLYQVVDDILE 260
+ + YGR +G+ +QVVDDIL+
Sbjct: 272 VSTTICEQMYEYGRNLGLSFQVVDDILD 299
>sp|P44916|ISPB_HAEIN Octaprenyl-diphosphate synthase OS=Haemophilus influenzae (strain
ATCC 51907 / DSM 11121 / KW20 / Rd) GN=ispB PE=1 SV=1
Length = 329
Score = 77.0 bits (188), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 55/223 (24%), Positives = 107/223 (47%), Gaps = 23/223 (10%)
Query: 50 ITEIDQNLEKAITVKYPEQIYESMRYSVLAKGTKRAPPVMCVAACELFGVNRIAAFPTAC 109
+ +++QN+ + P + + + ++ G KR P++ V A G + A
Sbjct: 20 MQKVNQNILAQLNSDVP--LIGQLGFYIVQGGGKRIRPLIAVLAARSLGFEGSNSITCAT 77
Query: 110 ALEMVHAASLIHDDLPCMDDDPSRRGQPSNHTVYGVDIAILAGDALFPLGFQHIVSHTPP 169
+E +H ASL+HDD+ +D+ RRG+ + + +G ++L GD ++ FQ
Sbjct: 78 FVEFIHTASLLHDDV--VDESDMRRGRATANAEFGNAASVLVGDFIYTRAFQ-------- 127
Query: 170 HLVPEPRVLRVIAEIARAVGSTGMAAGQFLDL-------EGEPNLVEFVQEKKFGEMSEC 222
LV + L++++ +A A + +A G+ L E N + + K + E
Sbjct: 128 -LVAQLESLKILSIMADA--TNVLAEGEVQQLMNVNDPETSEANYMRVIYSKT-ARLFEV 183
Query: 223 SAVCGGFLAGADDDEIQSLRRYGRAVGVLYQVVDDILEAKAQT 265
+ +AG + + ++L+ YGR +G +Q+VDD+L+ A T
Sbjct: 184 AGQAAAIVAGGTEAQEKALQDYGRYLGTAFQLVDDVLDYSANT 226
>sp|P31114|HEPS2_BACSU Heptaprenyl diphosphate synthase component 2 OS=Bacillus subtilis
(strain 168) GN=hepT PE=1 SV=1
Length = 348
Score = 77.0 bits (188), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 60/218 (27%), Positives = 106/218 (48%), Gaps = 23/218 (10%)
Query: 50 ITEIDQNLEKAITVKYPEQIYESMRYSVLAKGTKRAPPVMCVAACELFG---VNRIAAFP 106
I I++ LE+ + YP + +L G KR PV + + +FG +N+I
Sbjct: 42 IDVIERELEQTVRSDYP--LLSEAGLHLLQAGGKRIRPVFVLLSG-MFGDYDINKIKY-- 96
Query: 107 TACALEMVHAASLIHDDLPCMDDDPSRRGQPSNHTVYGVDIAILAGDALFPLGFQHIVSH 166
A LEM+H ASL+HDD +DD RRG+P+ + IA+ GD + + +
Sbjct: 97 VAVTLEMIHMASLVHDD--VIDDAELRRGKPTIKAKWDNRIAMYTGDYMLAGSLEMMTR- 153
Query: 167 TPPHLVPEPRVLRVIAE--IARAVGSTGMAAGQFLDLEGEPNLVEFVQ--EKKFGEMSEC 222
+ EP+ R++++ + +G ++ E NL +++ ++K +
Sbjct: 154 -----INEPKAHRILSQTIVEVCLGEIEQIKDKY---NMEQNLRTYLRRIKRKTALLIAV 205
Query: 223 SAVCGGFLAGADDDEIQSLRRYGRAVGVLYQVVDDILE 260
S G +GAD+ ++L +G VG+ YQ++DDIL+
Sbjct: 206 SCQLGAIASGADEKIHKALYWFGYYVGMSYQIIDDILD 243
>sp|Q9UWR6|GFPS_AERPX Geranylfarnesyl diphosphate synthase OS=Aeropyrum pernix GN=fgs
PE=1 SV=1
Length = 318
Score = 76.3 bits (186), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 79/272 (29%), Positives = 128/272 (47%), Gaps = 17/272 (6%)
Query: 66 PEQIYESMRYSVLAKGTKRAPPVMCVAACELFGVNRIA-AFPTACALEMVHAASLIHDDL 124
P+++ + + + A G + P + + A L G+ A A P A ++E H SLIHDD+
Sbjct: 15 PDRLSGASLHLIKAGGKRLRPLITLLTARMLGGLEAEARAIPLAASIETAHTFSLIHDDI 74
Query: 125 PCMDDDPSRRGQPSNHTVYGVDIAILAGDALFPLGFQHIVSHTPPHLVPEP--RVLRVIA 182
MD D RRG P+ H VYG D AILAGD L F+ I + E R +V++
Sbjct: 75 --MDRDEVRRGVPTTHVVYGDDWAILAGDTLHAAAFKMIADSREWGMSHEQAYRAFKVLS 132
Query: 183 EIARAVGSTGMAAGQFLDLEGEPNLVEFVQ--EKKFGEMSECSAVCGGFLAGADDDEIQS 240
E A + S G A + + ++ +++ K G + E +A G AGA + +
Sbjct: 133 EAAIQI-SRGQAYDMLFEETWDVDVADYLNMVRLKTGALIEAAARIGAVAAGAGSEIEKM 191
Query: 241 LRRYGRAVGVLYQVVDDIL----EAKAQTPRDEEKKKKKGKSYVAFYGVEKA--MEVAEE 294
+ G G+ +Q+ DDIL + K ++ K+ + Y V+KA E+ +
Sbjct: 192 MGEVGMNAGIAFQIRDDILGVIGDPKVTGKPVYNDLRRGKKTLLVIYAVKKAGRREIVDL 251
Query: 295 LRAKAKEELDRFKKYGDNVLPLYSFIDYAADR 326
+ KA E D K+ +++ +DYA R
Sbjct: 252 IGPKASE--DDLKRAA-SIIVDSGALDYAESR 280
>sp|Q8S948|SPS1_ARATH Solanesyl diphosphate synthase 1 OS=Arabidopsis thaliana GN=SPS1
PE=1 SV=1
Length = 406
Score = 75.5 bits (184), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 63/253 (24%), Positives = 119/253 (47%), Gaps = 31/253 (12%)
Query: 25 SSLPVSAASQLRSTQFDLKTYWTTLITEIDQNLEKAITVKYPEQIYESMRYSVLAKGTKR 84
S P+S + DL+T L++ + E + + EQI+ G KR
Sbjct: 78 SKQPISLVTLFELVAVDLQTLNDNLLSIV--GAENPVLISAAEQIF--------GAGGKR 127
Query: 85 APP----VMCVAACELFGVNRIAAFPTACA--LEMVHAASLIHDDLPCMDDDPSRRGQPS 138
P ++ A EL G+ + A +EM+H ASLIHDD+ +D+ RRG+ +
Sbjct: 128 MRPGLVFLVSHATAELAGLKELTTEHRRLAEIIEMIHTASLIHDDV--LDESDMRRGKET 185
Query: 139 NHTVYGVDIAILAGDALFPLGFQHIVSHTPPHLVPEPRVLRVIAEIAR--AVGSTGMAAG 196
H ++G +A+LAGD +F ++ + + V+++I+++ + A G A+
Sbjct: 186 VHELFGTRVAVLAGDFMFAQASWYLAN------LENLEVIKLISQVIKDFASGEIKQASS 239
Query: 197 QFLDLEGEPNLVEFVQEKKFGEMSECSAVCGG--FLAGADDDEIQSLRRYGRAVGVLYQV 254
F + + L E++ + + S +A G + + D + + +G+ +G+ +Q+
Sbjct: 240 LF---DCDTKLDEYLLKSFYKTASLVAASTKGAAIFSRVEPDVTEQMYEFGKNLGLSFQI 296
Query: 255 VDDILEAKAQTPR 267
VDDIL+ T +
Sbjct: 297 VDDILDFTQSTEQ 309
>sp|O66129|HEXB_MICLU Hexaprenyl-diphosphate synthase large subunit
((2E,6E)-farnesyl-diphosphate specific) OS=Micrococcus
luteus GN=hexs-b PE=1 SV=1
Length = 325
Score = 75.1 bits (183), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 57/226 (25%), Positives = 99/226 (43%), Gaps = 25/226 (11%)
Query: 43 KTYWTTLITEIDQNLEKAITVKYPEQIYESMRYSVLAKGTKRAPPVMCVAACELFGVNRI 102
K + I E+++ L + I + + + +L+ G KR P+ + + L +
Sbjct: 7 KAFLNPYIIEVEKRLYECI--QSDSETINKAAHHILSSGGKRVRPMFVLLSGFLNDTQKD 64
Query: 103 AAFPTACALEMVHAASLIHDDLPCMDDDPSRRGQPSNHTVYGVDIAILAGDALFPLGFQH 162
TA +LE+VH ASL+HDD +D+ RRG S H + D AI G L Q+
Sbjct: 65 DLIRTAVSLELVHMASLVHDDY--IDNSDMRRGNTSVHIAFDKDTAIRTGHFLLARALQN 122
Query: 163 I--VSHTPPHLVPEPRVLRVIAEIARAVGSTGMAAGQFLDLEGEPNL-VEFVQ-----EK 214
I ++++ H + +L V G+F + N V F +
Sbjct: 123 IATINNSKFHQIFSKTILEV-------------CFGEFDQMADRFNYPVSFTAYLRRINR 169
Query: 215 KFGEMSECSAVCGGFLAGADDDEIQSLRRYGRAVGVLYQVVDDILE 260
K + E S G + D+ ++++G +G+ YQ++DDIL+
Sbjct: 170 KTAILIEASCHLGALSSQLDEQSTYHIKQFGHCIGMSYQIIDDILD 215
>sp|Q0INZ4|SPS3_ORYSJ Probable solanesyl-diphosphate synthase 3, chloroplastic (Fragment)
OS=Oryza sativa subsp. japonica GN=SPS3 PE=3 SV=1
Length = 372
Score = 73.2 bits (178), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 56/219 (25%), Positives = 103/219 (47%), Gaps = 19/219 (8%)
Query: 50 ITEIDQNLEKAITVKYPEQIYESMRYSVLAKGTKRAPPVMCV----AACELFGVNRIAAF 105
+ +++ NL+ + + P + S + G KR P + A EL G+ +
Sbjct: 61 LLKLNNNLKSLVGAENP--VLVSAAEQIFGAGGKRLRPALVFLVSRATAELAGLLELTTE 118
Query: 106 PTACA--LEMVHAASLIHDDLPCMDDDPSRRGQPSNHTVYGVDIAILAGDALFPLGFQHI 163
A +EM+H ASLIHDD+ +DD RRG+ + H +YG +A+LAGD +F +
Sbjct: 119 HQRLAEIIEMIHTASLIHDDV--IDDSGMRRGKETIHQLYGTRVAVLAGDFMFAQSSWFL 176
Query: 164 VSHTPPHLVPEPRVLRVIAEIARAVGSTGMAAGQFLDLEGEPNLVEFVQEK--KFGEMSE 221
+ + V+++I+++ + S + L + + L +++ + K +
Sbjct: 177 AN------LENIEVIKLISQVIKDFASGEIKQASTL-FDCDITLDDYLLKSYYKTASLIA 229
Query: 222 CSAVCGGFLAGADDDEIQSLRRYGRAVGVLYQVVDDILE 260
S +G + + YGR +G+ +QVVDDIL+
Sbjct: 230 ASTRSAAIFSGVSTAICEQMYEYGRNLGLSFQVVDDILD 268
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.136 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 125,810,747
Number of Sequences: 539616
Number of extensions: 5386406
Number of successful extensions: 18287
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 56
Number of HSP's that attempted gapping in prelim test: 18043
Number of HSP's gapped (non-prelim): 126
length of query: 334
length of database: 191,569,459
effective HSP length: 118
effective length of query: 216
effective length of database: 127,894,771
effective search space: 27625270536
effective search space used: 27625270536
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)