Query 019903
Match_columns 334
No_of_seqs 232 out of 1463
Neff 7.1
Searched_HMMs 46136
Date Fri Mar 29 05:27:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019903.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019903hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK10581 geranyltranstransfera 100.0 6.9E-64 1.5E-68 475.0 32.3 287 40-328 1-299 (299)
2 COG0142 IspA Geranylgeranyl py 100.0 1.2E-58 2.5E-63 443.8 31.6 274 42-328 3-322 (322)
3 TIGR02748 GerC3_HepT heptapren 100.0 4.7E-58 1E-62 439.3 31.4 271 42-328 5-319 (319)
4 PLN02890 geranyl diphosphate s 100.0 6.1E-58 1.3E-62 449.2 32.9 274 39-328 81-422 (422)
5 PRK10888 octaprenyl diphosphat 100.0 2E-57 4.3E-62 435.2 31.4 271 42-328 6-323 (323)
6 PLN02857 octaprenyl-diphosphat 100.0 1.6E-57 3.5E-62 446.4 31.3 273 40-328 95-416 (416)
7 TIGR02749 prenyl_cyano solanes 100.0 2.1E-57 4.6E-62 435.0 30.5 271 42-328 6-322 (322)
8 CHL00151 preA prenyl transfera 100.0 3.8E-57 8.3E-62 433.7 30.7 272 40-327 5-322 (323)
9 KOG0776 Geranylgeranyl pyropho 100.0 4.4E-57 9.5E-62 430.9 27.9 284 39-326 64-384 (384)
10 cd00685 Trans_IPPS_HT Trans-Is 100.0 3.4E-52 7.3E-57 388.1 27.3 245 67-326 4-259 (259)
11 PF00348 polyprenyl_synt: Poly 100.0 1E-49 2.3E-54 371.6 19.1 224 71-301 3-235 (260)
12 cd00867 Trans_IPPS Trans-Isopr 100.0 1.8E-38 3.8E-43 290.6 25.2 225 85-326 1-236 (236)
13 KOG0777 Geranylgeranyl pyropho 100.0 2.4E-32 5.2E-37 242.7 17.0 239 67-327 21-306 (322)
14 KOG0711 Polyprenyl synthetase 100.0 2.4E-31 5.2E-36 246.3 18.1 238 41-288 11-270 (347)
15 cd00385 Isoprenoid_Biosyn_C1 I 99.9 3.4E-19 7.4E-24 159.5 24.5 186 105-308 13-225 (243)
16 PF07307 HEPPP_synt_1: Heptapr 97.1 0.013 2.9E-07 53.1 13.4 61 100-167 31-91 (212)
17 cd00683 Trans_IPPS_HH Trans-Is 96.5 0.44 9.6E-06 44.4 18.8 112 191-308 96-226 (265)
18 TIGR03465 HpnD squalene syntha 96.1 0.85 1.8E-05 42.6 18.5 111 191-308 88-217 (266)
19 PLN02632 phytoene synthase 96.1 0.079 1.7E-06 51.4 11.8 114 192-308 144-278 (334)
20 TIGR03464 HpnC squalene syntha 95.4 0.41 9E-06 44.8 13.3 110 192-308 90-218 (266)
21 PF00494 SQS_PSY: Squalene/phy 94.3 0.53 1.2E-05 43.7 11.0 112 192-308 95-227 (267)
22 TIGR01559 squal_synth farnesyl 92.8 4.3 9.3E-05 39.5 14.8 126 177-308 102-248 (336)
23 COG1562 ERG9 Phytoene/squalene 81.0 52 0.0011 31.3 16.2 104 192-308 107-236 (288)
24 TIGR02748 GerC3_HepT heptapren 77.0 16 0.00035 35.1 9.1 71 230-308 57-127 (319)
25 PF00348 polyprenyl_synt: Poly 75.4 16 0.00034 33.9 8.3 72 228-307 25-96 (260)
26 PRK10888 octaprenyl diphosphat 73.9 16 0.00035 35.3 8.2 70 230-307 58-127 (323)
27 cd00685 Trans_IPPS_HT Trans-Is 73.5 25 0.00054 32.5 9.2 65 236-308 39-103 (259)
28 cd00687 Terpene_cyclase_nonpla 72.8 83 0.0018 29.4 14.9 58 204-264 159-221 (303)
29 PF06783 UPF0239: Uncharacteri 70.9 5.6 0.00012 30.7 3.4 22 234-255 14-35 (85)
30 PRK12882 ubiA prenyltransferas 64.1 1.3E+02 0.0027 28.1 16.8 57 106-162 42-99 (276)
31 PRK10581 geranyltranstransfera 63.4 61 0.0013 30.9 9.7 70 230-307 58-129 (299)
32 TIGR02749 prenyl_cyano solanes 60.3 48 0.001 31.9 8.5 61 239-307 70-130 (322)
33 CHL00151 preA prenyl transfera 51.2 67 0.0015 30.9 7.8 59 240-306 72-130 (323)
34 PRK13105 ubiA prenyltransferas 49.3 59 0.0013 30.8 6.9 60 104-164 162-221 (282)
35 cd00867 Trans_IPPS Trans-Isopr 48.6 1.2E+02 0.0025 27.1 8.6 36 226-261 8-43 (236)
36 PRK13105 ubiA prenyltransferas 43.8 1.8E+02 0.0039 27.6 9.2 45 248-299 172-216 (282)
37 PRK12884 ubiA prenyltransferas 39.8 3.1E+02 0.0067 25.4 18.0 162 104-292 39-204 (279)
38 PF03936 Terpene_synth_C: Terp 37.6 2.3E+02 0.0051 25.5 8.9 53 244-303 210-269 (270)
39 PRK12875 ubiA prenyltransferas 35.6 1.1E+02 0.0024 28.9 6.5 43 112-155 175-217 (282)
40 PRK12872 ubiA prenyltransferas 35.1 1.4E+02 0.003 27.8 7.1 43 247-296 172-214 (285)
41 PRK06080 1,4-dihydroxy-2-napht 33.5 1.6E+02 0.0035 27.5 7.3 59 102-161 168-226 (293)
42 PRK07566 bacteriochlorophyll/c 33.5 1.2E+02 0.0026 29.0 6.4 57 103-160 190-246 (314)
43 PF10776 DUF2600: Protein of u 31.8 58 0.0013 31.7 3.9 99 222-324 35-148 (330)
44 PLN02878 homogentisate phytylt 31.6 1.8E+02 0.0038 27.7 7.0 49 112-161 166-214 (280)
45 COG0142 IspA Geranylgeranyl py 31.4 87 0.0019 30.2 5.1 61 240-308 70-130 (322)
46 PRK13595 ubiA prenyltransferas 31.3 3.8E+02 0.0081 25.6 9.3 78 220-306 155-232 (292)
47 TIGR02056 ChlG chlorophyll syn 31.1 2E+02 0.0043 27.4 7.5 52 106-158 187-238 (306)
48 PLN02890 geranyl diphosphate s 30.6 1.6E+02 0.0035 29.7 7.0 59 240-306 165-223 (422)
49 PLN00012 chlorophyll synthetas 30.0 1.6E+02 0.0034 29.2 6.7 42 245-293 261-302 (375)
50 PRK12884 ubiA prenyltransferas 28.8 1.8E+02 0.0039 27.0 6.7 57 98-155 151-207 (279)
51 PLN02922 prenyltransferase 28.8 2.4E+02 0.0052 27.1 7.6 56 104-160 190-245 (315)
52 TIGR01476 chlor_syn_BchG bacte 27.4 2.9E+02 0.0064 25.7 7.9 52 105-157 164-215 (283)
53 PRK09573 (S)-2,3-di-O-geranylg 27.3 5.1E+02 0.011 24.0 18.6 55 105-161 40-97 (279)
54 PLN02857 octaprenyl-diphosphat 26.0 2.3E+02 0.0051 28.4 7.2 34 93-128 279-312 (416)
55 PF15476 SAP25: Histone deacet 24.4 25 0.00054 30.7 0.0 16 12-27 34-49 (204)
56 TIGR02056 ChlG chlorophyll syn 23.5 6.4E+02 0.014 23.9 14.3 50 109-160 61-113 (306)
57 PF12029 DUF3516: Domain of un 23.4 1.2E+02 0.0025 30.8 4.4 55 270-325 246-304 (461)
58 KOG0776 Geranylgeranyl pyropho 22.2 4.7E+02 0.01 26.1 8.2 68 233-308 125-194 (384)
No 1
>PRK10581 geranyltranstransferase; Provisional
Probab=100.00 E-value=6.9e-64 Score=474.99 Aligned_cols=287 Identities=33% Similarity=0.516 Sum_probs=253.7
Q ss_pred hcHHHHHHHHHHHHHHHHHHhhccC--CchhHHHHHHHhhhcCCCCcchHHHHHHHHHHhCCCchhhHHHHHHHHHHHHH
Q 019903 40 FDLKTYWTTLITEIDQNLEKAITVK--YPEQIYESMRYSVLAKGTKRAPPVMCVAACELFGVNRIAAFPTACALEMVHAA 117 (334)
Q Consensus 40 ~~~~~~~~~~~~~i~~~L~~~~~~~--~~~~l~~~~~y~~~~~gGKrlRp~l~ll~~~~~g~~~~~~~~lA~avEliH~a 117 (334)
|++..+++...+.|++.|.+.+... .++.+.++++|.+.. ||||+||+|++++++++|++++.+.++|++|||||+|
T Consensus 1 ~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~l~~~~~~~~~~-gGKrlRp~L~l~~~~~~g~~~~~~~~~A~avEliH~a 79 (299)
T PRK10581 1 MDFPQQLQACVQQANQALSRFIAPLPFQNTPVVEAMQYGALL-GGKRLRPFLVYATGQMFGVSTNTLDAPAAAVECIHAY 79 (299)
T ss_pred CCHHHHHHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHhc-CcccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 4677788888999999999988642 245699999998875 9999999999999999999888899999999999999
Q ss_pred HHHHhCCCCCCCCCCCCCCCCCCCcCChHHHHHHHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHhhhhhhhHh
Q 019903 118 SLIHDDLPCMDDDPSRRGQPSNHTVYGVDIAILAGDALFPLGFQHIVSHTPPHLVPEPRVLRVIAEIARAVGSTGMAAGQ 197 (334)
Q Consensus 118 sLIhDDIp~iD~s~~RRG~pt~h~~~G~~~Avl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~GQ 197 (334)
|||||||||||+|++|||+||+|.+||++.|||+||+|++.+|+++++.... ........+++..++.+.|..+|+.||
T Consensus 80 SLiHDDip~~D~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~GQ 158 (299)
T PRK10581 80 SLIHDDLPAMDDDDLRRGLPTCHVKFGEANAILAGDALQTLAFSILSDAPMP-EVSDRDRISMISELASASGIAGMCGGQ 158 (299)
T ss_pred HHHHcCcccccCCCccCCCcChHHHhCcchHHHHHHHHHHHHHHHHHhCCCc-cCChHHHHHHHHHHHHhcccchhhHhh
Confidence 9999999999999999999999999999999999999999999999875321 123345567777777665556799999
Q ss_pred hhhccC-----ChhHHHHHHHhhHHHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHHHHHHhHHhhHhhhhcCC----CC
Q 019903 198 FLDLEG-----EPNLVEFVQEKKFGEMSECSAVCGGFLAGADD-DEIQSLRRYGRAVGVLYQVVDDILEAKAQT----PR 267 (334)
Q Consensus 198 ~lDl~~-----~~~~y~~i~~~KTa~Lf~~a~~lGa~lag~~~-~~~~~l~~~G~~lG~afQi~DD~lD~~~~~----~~ 267 (334)
.+|+.+ +.+.|.+|+.+|||+||++||.+|++++|.++ +.++.+++||.++|+||||+||++|+++++ +.
T Consensus 159 ~ld~~~~~~~~~~~~y~~i~~~KTa~L~~~~~~~gailag~~~~~~~~~l~~~g~~lG~aFQI~DDilD~~g~~~~~GK~ 238 (299)
T PRK10581 159 ALDLEAEGKQVPLDALERIHRHKTGALIRAAVRLGALSAGDKGRRALPVLDRYAESIGLAFQVQDDILDVVGDTATLGKR 238 (299)
T ss_pred HHHHhccCCCCCHHHHHHHHHHhhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHccccCChHHHCCC
Confidence 999876 67889999999999999999999999999864 578999999999999999999999999875 34
Q ss_pred CchHHhhcCchHHHHhHHHHHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHhccc
Q 019903 268 DEEKKKKKGKSYVAFYGVEKAMEVAEELRAKAKEELDRFKKYGDNVLPLYSFIDYAADREF 328 (334)
Q Consensus 268 ~~~Dl~~~k~t~~~~~gle~a~~~a~~~~~~A~~~L~~lp~~~~~~~~L~~l~~~~~~R~~ 328 (334)
.++|+.+||.|+|.+++++++++++++|.++|++.|+.+|.++..++.|.++++|+++|.+
T Consensus 239 ~g~Dl~~gk~T~p~l~~~e~a~~~a~~~~~~A~~~l~~l~~~~~~~~~L~~l~~~~~~R~~ 299 (299)
T PRK10581 239 QGADQQLGKSTYPALLGLEQARKKARDLIDDARQSLDQLAAQSLDTSALEALANYIIQRDK 299 (299)
T ss_pred cchhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCchhHHHHHHHHHHHHhccC
Confidence 6799999999999999999999999999999999999998733347899999999999974
No 2
>COG0142 IspA Geranylgeranyl pyrophosphate synthase [Coenzyme metabolism]
Probab=100.00 E-value=1.2e-58 Score=443.76 Aligned_cols=274 Identities=33% Similarity=0.518 Sum_probs=242.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHhhhcCCCCcchHHHHHHHHHHhCCCch----hhHHHHHHHHHHHHH
Q 019903 42 LKTYWTTLITEIDQNLEKAITVKYPEQIYESMRYSVLAKGTKRAPPVMCVAACELFGVNRI----AAFPTACALEMVHAA 117 (334)
Q Consensus 42 ~~~~~~~~~~~i~~~L~~~~~~~~~~~l~~~~~y~~~~~gGKrlRp~l~ll~~~~~g~~~~----~~~~lA~avEliH~a 117 (334)
+...+....+.|++.|.+.++...++.+.+++.|.+.+ ||||+||++++++++++|.+.+ .++.+|++|||||++
T Consensus 3 ~~~~~~~~~~~i~~~l~~~l~~~~~~~l~~a~~~~~~a-GGKrlRP~l~l~~~~~~~~~~~~~~~~~~~~aaavEliH~~ 81 (322)
T COG0142 3 LLALLLKRLARIEELLSELLSGSDPELLLEAMRYLLLA-GGKRLRPLLVLLAAEALGIDLETGGNDALDLAAAIELIHTA 81 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHhc-CCccHhHHHHHHHHHHcCCCcccchhhHHHHHHHHHHHHHH
Confidence 55678888999999999999844466899999999875 9999999999999999985443 579999999999999
Q ss_pred HHHHhCCCCCCCCCCCCCCCCCCCcCChHHHHHHHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHhhhhhhhHh
Q 019903 118 SLIHDDLPCMDDDPSRRGQPSNHTVYGVDIAILAGDALFPLGFQHIVSHTPPHLVPEPRVLRVIAEIARAVGSTGMAAGQ 197 (334)
Q Consensus 118 sLIhDDIp~iD~s~~RRG~pt~h~~~G~~~Avl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~GQ 197 (334)
||||||| ||+|++|||+||+|.+||+.+||++||+|++.||+++++... +...+.+.+...+ .+|+.||
T Consensus 82 SLiHDDv--mD~s~~RRG~pt~~~~~g~~~AIlaGD~L~~~Af~~l~~~~~----~~~~~~~~~~~~~-----~~~~~GQ 150 (322)
T COG0142 82 SLIHDDL--MDDDDLRRGKPTVHAKFGEATAILAGDALLAAAFELLSKLGS----EALEAIKALAEAI-----NGLCGGQ 150 (322)
T ss_pred HHHHhhc--ccCCCccCCCCCchhHhccHHHHHHHHHHHHHHHHHHHhCCc----hhHHHHHHHHHHH-----HHHHHhH
Confidence 9999999 999999999999999999999999999999999999998642 1133444444433 5789999
Q ss_pred hhhccC-----ChhHHHHHHHhhHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHhhHhhhhcCCC----CC
Q 019903 198 FLDLEG-----EPNLVEFVQEKKFGEMSECSAVCGGFLAGADDDEIQSLRRYGRAVGVLYQVVDDILEAKAQTP----RD 268 (334)
Q Consensus 198 ~lDl~~-----~~~~y~~i~~~KTa~Lf~~a~~lGa~lag~~~~~~~~l~~~G~~lG~afQi~DD~lD~~~~~~----~~ 268 (334)
.+|+.+ +.++|.+|+++|||+||+++|++|++++|++++..+.++.||.++|+||||+||++|++++.+ ..
T Consensus 151 ~lDl~~~~~~~t~e~y~~~i~~KTa~L~~~a~~~ga~la~~~~~~~~~l~~~g~~lGlaFQi~DDiLD~~~d~~~lGK~~ 230 (322)
T COG0142 151 ALDLAFENKPVTLEEYLRVIELKTAALFAAAAVLGAILAGADEELLEALEDYGRNLGLAFQIQDDILDITGDEEELGKPV 230 (322)
T ss_pred HHHHHccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhHHHHHHHHhhcCCCChHHhCCCc
Confidence 999987 578999999999999999999999999999999999999999999999999999999998754 46
Q ss_pred chHHhhcCchHHHHhHHH---------------------------------HHHHHHHHHHHHHHHHHhhccCCCCChHH
Q 019903 269 EEKKKKKGKSYVAFYGVE---------------------------------KAMEVAEELRAKAKEELDRFKKYGDNVLP 315 (334)
Q Consensus 269 ~~Dl~~~k~t~~~~~gle---------------------------------~a~~~a~~~~~~A~~~L~~lp~~~~~~~~ 315 (334)
|+|+.++|.|+|.+++++ ++..++..|.++|++.|+.+|+ ++.++.
T Consensus 231 g~Dl~~gK~T~p~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~~~~~a~~~L~~l~~-~~~~~~ 309 (322)
T COG0142 231 GSDLKEGKPTLPVLLALEKANEDQKLLRILLEGGGEVEEALELLRKSGAIEYAKNLAKTYVEKAKEALEKLPD-SEAKEA 309 (322)
T ss_pred chHHHcCCchHHHHHHHHcCchhhHHHHHHhhcchHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHhCCC-chHHHH
Confidence 799999999999998876 4555799999999999999995 789999
Q ss_pred HHHHHHHHHhccc
Q 019903 316 LYSFIDYAADREF 328 (334)
Q Consensus 316 L~~l~~~~~~R~~ 328 (334)
|.++++|+++|.+
T Consensus 310 L~~la~~i~~R~~ 322 (322)
T COG0142 310 LLELADFIIKRKY 322 (322)
T ss_pred HHHHHHHHHhccC
Confidence 9999999999964
No 3
>TIGR02748 GerC3_HepT heptaprenyl diphosphate synthase component II. Members of this family are component II of the heterodimeric heptaprenyl diphosphate synthase. The trusted cutoff was set such that all members identified are encoded near to a recognizable gene for component I (in Pfam family pfam07307). This enzyme acts in menaquinone-7 isoprenoid side chain biosynthesis.
Probab=100.00 E-value=4.7e-58 Score=439.30 Aligned_cols=271 Identities=26% Similarity=0.401 Sum_probs=240.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHhhhcCCCCcchHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHH
Q 019903 42 LKTYWTTLITEIDQNLEKAITVKYPEQIYESMRYSVLAKGTKRAPPVMCVAACELFGVNRIAAFPTACALEMVHAASLIH 121 (334)
Q Consensus 42 ~~~~~~~~~~~i~~~L~~~~~~~~~~~l~~~~~y~~~~~gGKrlRp~l~ll~~~~~g~~~~~~~~lA~avEliH~asLIh 121 (334)
+..+++..++.|++.|++.+.... +.+.+++.|++.. ||||+||.|++++++++|++.+.++++|+++||||+|||||
T Consensus 5 ~~~~~~~~l~~v~~~l~~~~~~~~-~~l~~~~~~~~~~-gGKriRp~L~ll~~~~~~~~~~~~~~~A~aiEliH~asLiH 82 (319)
T TIGR02748 5 IYSFLQKDIDSIEKELEKAVQAEH-PVLSEASLHLLEA-GGKRIRPVFVLLAGKFGDYDLDAIKHVAVALELIHMASLVH 82 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCc-hHHHHHHHHHHhc-CCchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 456778889999999999987654 4689999998874 99999999999999998888888999999999999999999
Q ss_pred hCCCCCCCCCCCCCCCCCCCcCChHHHHHHHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHhhhhhhhHhhhhc
Q 019903 122 DDLPCMDDDPSRRGQPSNHTVYGVDIAILAGDALFPLGFQHIVSHTPPHLVPEPRVLRVIAEIARAVGSTGMAAGQFLDL 201 (334)
Q Consensus 122 DDIp~iD~s~~RRG~pt~h~~~G~~~Avl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~GQ~lDl 201 (334)
||| ||+|++|||+||+|.+||+++||++||||++.+|+.+++.. ...+.+.+.... .+++.||.+|+
T Consensus 83 DDI--~D~s~~RRg~pt~~~~~G~~~Ail~GD~L~~~a~~~l~~~~------~~~~~~~~~~~~-----~~~~~Gq~~~~ 149 (319)
T TIGR02748 83 DDV--IDDADLRRGRPTIKSKWGNRIAMYTGDYLFAKSLETMTEIK------DPRAHQILSHTI-----VEVCRGEIEQI 149 (319)
T ss_pred ccc--cCCCCCCCCCcCHHHHhChHHHHHHHHHHHHHHHHHHHhCC------cHHHHHHHHHHH-----HHHHHHHHHHH
Confidence 999 99999999999999999999999999999999999998743 234445544443 46899999997
Q ss_pred cC------ChhHHHHHHHhhHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHhhHhhhhcCCC----CCchH
Q 019903 202 EG------EPNLVEFVQEKKFGEMSECSAVCGGFLAGADDDEIQSLRRYGRAVGVLYQVVDDILEAKAQTP----RDEEK 271 (334)
Q Consensus 202 ~~------~~~~y~~i~~~KTa~Lf~~a~~lGa~lag~~~~~~~~l~~~G~~lG~afQi~DD~lD~~~~~~----~~~~D 271 (334)
.+ +.++|.+|+.+|||+||++||.+|++++|++++.++.+++||+++|+||||+||++||+++++ ..++|
T Consensus 150 ~~~~~~~~~~~~Y~~~i~~KTa~L~~~~~~~ga~~ag~~~~~~~~l~~~g~~lG~aFQI~DDilD~~~~~~~~GK~~~~D 229 (319)
T TIGR02748 150 KDKYNFDQNLRTYLRRIKRKTALLIAASCQLGAIASGANEAIVKKLYWFGYYVGMSYQITDDILDFVGTEEELGKPAGGD 229 (319)
T ss_pred HhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHhhCCChhhH
Confidence 64 678899999999999999999999999999999999999999999999999999999998753 46799
Q ss_pred HhhcCchHHHHhH----------------------------------HHHHHHHHHHHHHHHHHHHhhccCCCCChHHHH
Q 019903 272 KKKKGKSYVAFYG----------------------------------VEKAMEVAEELRAKAKEELDRFKKYGDNVLPLY 317 (334)
Q Consensus 272 l~~~k~t~~~~~g----------------------------------le~a~~~a~~~~~~A~~~L~~lp~~~~~~~~L~ 317 (334)
+.+||.|+|.+++ +++++.++++|.++|++.|+.||. ++.++.|.
T Consensus 230 l~~gk~Tlp~l~al~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~g~~~~a~~~a~~~~~~A~~~L~~lp~-~~~~~~L~ 308 (319)
T TIGR02748 230 LLQGNVTLPVLYAMEDPFLKKRIEQVLEETTAEEMEPLIEEVKKSDAIEYAYAVSDRYLKKALELLDGLPD-GRAKKPLQ 308 (319)
T ss_pred HhCCCchHHHHHHhcCcchhHHHHHHHcCCCHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHhcCCC-CHHHHHHH
Confidence 9999999987653 567999999999999999999998 67889999
Q ss_pred HHHHHHHhccc
Q 019903 318 SFIDYAADREF 328 (334)
Q Consensus 318 ~l~~~~~~R~~ 328 (334)
.+++++++|.+
T Consensus 309 ~l~~~~~~R~~ 319 (319)
T TIGR02748 309 EIAKYIGKRKY 319 (319)
T ss_pred HHHHHHHhccC
Confidence 99999999974
No 4
>PLN02890 geranyl diphosphate synthase
Probab=100.00 E-value=6.1e-58 Score=449.24 Aligned_cols=274 Identities=21% Similarity=0.317 Sum_probs=240.2
Q ss_pred hhcHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHhhhcCC--CCcchHHHHHHHHHHhCCCc---------------
Q 019903 39 QFDLKTYWTTLITEIDQNLEKAITVKYPEQIYESMRYSVLAKG--TKRAPPVMCVAACELFGVNR--------------- 101 (334)
Q Consensus 39 ~~~~~~~~~~~~~~i~~~L~~~~~~~~~~~l~~~~~y~~~~~g--GKrlRp~l~ll~~~~~g~~~--------------- 101 (334)
.-+....++..++.|++.|++.+....| .+.++++|.+.. | |||+||+|++++++++|.+.
T Consensus 81 ~~~~~~~i~~~L~~v~~~L~~~v~~~~~-~l~~a~~y~~~~-G~~GKrlRP~LvLL~a~a~g~~~~~~~~~~~~~~~~~~ 158 (422)
T PLN02890 81 QLDPFSLVADELSLLANKLRSMVVAEVP-KLASAAEYFFKV-GVEGKRFRPTVLLLMATALNVPLPESTEGGVLDIVASE 158 (422)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCCh-HHHHHHHHHHhC-CCCCccHhHHHHHHHHHHcCCCcccccccccchhhccc
Confidence 3445556777889999999999887654 699999998864 7 99999999999999998642
Q ss_pred --hhhHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCCcCChHHHHHHHHHHHHHHHHHHHhcCCCCCCChHHHHH
Q 019903 102 --IAAFPTACALEMVHAASLIHDDLPCMDDDPSRRGQPSNHTVYGVDIAILAGDALFPLGFQHIVSHTPPHLVPEPRVLR 179 (334)
Q Consensus 102 --~~~~~lA~avEliH~asLIhDDIp~iD~s~~RRG~pt~h~~~G~~~Avl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~ 179 (334)
++++.+|++|||||+|||||||| ||++++|||+||+|.+||+++||++||||++.++..++... ...+++
T Consensus 159 ~~~~~~~~AaavEliH~ASLVHDDI--iD~s~~RRG~pt~~~~~G~~~AIlaGD~Lla~A~~~l~~~~------~~~~~~ 230 (422)
T PLN02890 159 LRTRQQNIAEITEMIHVASLLHDDV--LDDADTRRGVGSLNVVMGNKLSVLAGDFLLSRACVALAALK------NTEVVS 230 (422)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHccc--ccCCCCcCCCcChhhhcChHHHHHHHHHHHHHHHHHHHcCC------cHHHHH
Confidence 34789999999999999999999 99999999999999999999999999999999999997642 345555
Q ss_pred HHHHHHHHHhhhhhhhHhhhhccC------ChhHHHHHHHhhHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHh
Q 019903 180 VIAEIARAVGSTGMAAGQFLDLEG------EPNLVEFVQEKKFGEMSECSAVCGGFLAGADDDEIQSLRRYGRAVGVLYQ 253 (334)
Q Consensus 180 l~~~~~~~~~~~~~~~GQ~lDl~~------~~~~y~~i~~~KTa~Lf~~a~~lGa~lag~~~~~~~~l~~~G~~lG~afQ 253 (334)
++.+.. ..+++||.+|+.+ ++++|.+++.+|||+||+.||++||+++|++++.++.+++||+++|+|||
T Consensus 231 ~~s~a~-----~~l~~Gq~ld~~~~~~~~~s~~~Yl~~i~~KTa~Lf~~s~~~gAilaga~~~~~~~l~~fG~~lGlAFQ 305 (422)
T PLN02890 231 LLATAV-----EHLVTGETMQITSSREQRRSMDYYMQKTYYKTASLISNSCKAVAILAGQTAEVAVLAFEYGRNLGLAFQ 305 (422)
T ss_pred HHHHHH-----HHHHHHHHHHHHhccCCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHcCcCHHHHHHHHHHHHHHHHHHH
Confidence 555543 3689999999865 67899999999999999999999999999999999999999999999999
Q ss_pred HHhhHhhhhcCCC----CCchHHhhcCchHHHHh---------------------------------HHHHHHHHHHHHH
Q 019903 254 VVDDILEAKAQTP----RDEEKKKKKGKSYVAFY---------------------------------GVEKAMEVAEELR 296 (334)
Q Consensus 254 i~DD~lD~~~~~~----~~~~Dl~~~k~t~~~~~---------------------------------gle~a~~~a~~~~ 296 (334)
|+||++||+++++ ..++|+++||.|+|.++ |++++++++++|.
T Consensus 306 I~DDiLD~~g~~~~~GK~~g~DL~eGk~TlPvl~al~~~~~l~~~l~~~~~~~~~v~~~~~~i~~~gaie~a~~la~~~~ 385 (422)
T PLN02890 306 LIDDVLDFTGTSASLGKGSLSDIRHGVITAPILFAMEEFPQLREVVDRGFDNPANVDIALEYLGKSRGIQRTRELAREHA 385 (422)
T ss_pred HHHHHHhhcCChhhhCCCchhhHhcCCccHHHHHHHhcCHHHHHHHhcccCCHHHHHHHHHHHHHcCHHHHHHHHHHHHH
Confidence 9999999998854 45699999999998653 5789999999999
Q ss_pred HHHHHHHhhccCCCC------ChHHHHHHHHHHHhccc
Q 019903 297 AKAKEELDRFKKYGD------NVLPLYSFIDYAADREF 328 (334)
Q Consensus 297 ~~A~~~L~~lp~~~~------~~~~L~~l~~~~~~R~~ 328 (334)
++|+++|+.||. ++ .++.|..+++++++|.|
T Consensus 386 ~~A~~~L~~lp~-s~~~~~~~~r~~L~~L~~~vi~R~k 422 (422)
T PLN02890 386 NLAAAAIESLPE-TDDEDVLTSRRALIDLTERVITRNK 422 (422)
T ss_pred HHHHHHHHhCCC-CccccchHHHHHHHHHHHHHHhccC
Confidence 999999999998 44 58999999999999975
No 5
>PRK10888 octaprenyl diphosphate synthase; Provisional
Probab=100.00 E-value=2e-57 Score=435.24 Aligned_cols=271 Identities=24% Similarity=0.373 Sum_probs=240.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHhhhcCCCCcchHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHH
Q 019903 42 LKTYWTTLITEIDQNLEKAITVKYPEQIYESMRYSVLAKGTKRAPPVMCVAACELFGVNRIAAFPTACALEMVHAASLIH 121 (334)
Q Consensus 42 ~~~~~~~~~~~i~~~L~~~~~~~~~~~l~~~~~y~~~~~gGKrlRp~l~ll~~~~~g~~~~~~~~lA~avEliH~asLIh 121 (334)
+..++...++.|++.|.+.+.... +.+.++.+|.+. .||||+||.|++++++++|++.+.++++|+++||||+|||||
T Consensus 6 ~~~~i~~~l~~v~~~l~~~~~~~~-~~l~~~~~~~~~-~~GKrlRp~l~ll~~~~~g~~~~~~~~~A~avEllH~asLiH 83 (323)
T PRK10888 6 INELTAQDMAGVNAAILEQLNSDV-QLINQLGYYIIS-GGGKRIRPMIAVLAARAVGYQGNAHVTIAALIEFIHTATLLH 83 (323)
T ss_pred HHHHHHHHHHHHHHHHHHHHcccc-hhHHHHHHHHHh-CCCchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHH
Confidence 455677789999999999987654 458899998876 599999999999999999998889999999999999999999
Q ss_pred hCCCCCCCCCCCCCCCCCCCcCChHHHHHHHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHhhhhhhhHhhhhc
Q 019903 122 DDLPCMDDDPSRRGQPSNHTVYGVDIAILAGDALFPLGFQHIVSHTPPHLVPEPRVLRVIAEIARAVGSTGMAAGQFLDL 201 (334)
Q Consensus 122 DDIp~iD~s~~RRG~pt~h~~~G~~~Avl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~GQ~lDl 201 (334)
||| ||++++|||+||+|.+||+++|||+||||++.+|+.+++.. ...++.++.... ..+++||.+|+
T Consensus 84 DDI--~D~s~~RRG~pt~~~~~G~~~Ail~GD~L~~~a~~~l~~~~------~~~~~~~~~~~~-----~~~~~Gq~~d~ 150 (323)
T PRK10888 84 DDV--VDESDMRRGKATANAAFGNAASVLVGDFIYTRAFQMMTSLG------SLKVLEVMSEAV-----NVIAEGEVLQL 150 (323)
T ss_pred ccc--ccCCcccCCCCCHHHHhCccHHHHHHHHHHHHHHHHHHhCC------CHHHHHHHHHHH-----HHHHHHHHHHH
Confidence 999 99999999999999999999999999999999999998642 344555554443 35789999997
Q ss_pred cC------ChhHHHHHHHhhHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHhhHhhhhcCCC----CCchH
Q 019903 202 EG------EPNLVEFVQEKKFGEMSECSAVCGGFLAGADDDEIQSLRRYGRAVGVLYQVVDDILEAKAQTP----RDEEK 271 (334)
Q Consensus 202 ~~------~~~~y~~i~~~KTa~Lf~~a~~lGa~lag~~~~~~~~l~~~G~~lG~afQi~DD~lD~~~~~~----~~~~D 271 (334)
.+ +.++|.+|+.+|||+||++||.+|++++|++++.++.+++||+++|+||||+||++||+++++ ..++|
T Consensus 151 ~~~~~~~~s~~~y~~~i~~KTa~lf~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQi~DD~ld~~~~~~~~GK~~g~D 230 (323)
T PRK10888 151 MNVNDPDITEENYMRVIYSKTARLFEAAAQCSGILAGCTPEQEKGLQDYGRYLGTAFQLIDDLLDYSADGETLGKNVGDD 230 (323)
T ss_pred HhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCChHhhCCCchhh
Confidence 54 678999999999999999999999999999999999999999999999999999999998754 36799
Q ss_pred HhhcCchHHHHh-------------------------------------HHHHHHHHHHHHHHHHHHHHhhccCCCCChH
Q 019903 272 KKKKGKSYVAFY-------------------------------------GVEKAMEVAEELRAKAKEELDRFKKYGDNVL 314 (334)
Q Consensus 272 l~~~k~t~~~~~-------------------------------------gle~a~~~a~~~~~~A~~~L~~lp~~~~~~~ 314 (334)
+.+||+|+|.++ +++++++++++|.++|++.|+.+|. ++.++
T Consensus 231 l~~gk~Tlp~l~al~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~e~~~~~a~~~~~~A~~~L~~lp~-~~~~~ 309 (323)
T PRK10888 231 LNEGKPTLPLLHAMHHGTPEQAAMIRTAIEQGNGRHLLEPVLEAMNACGSLEWTRQRAEEEADKAIAALQVLPD-TPWRE 309 (323)
T ss_pred hhcCCchHHHHHHHHhCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHhcCCC-CHHHH
Confidence 999999998543 4678888999999999999999998 67789
Q ss_pred HHHHHHHHHHhccc
Q 019903 315 PLYSFIDYAADREF 328 (334)
Q Consensus 315 ~L~~l~~~~~~R~~ 328 (334)
.|..+++++++|.+
T Consensus 310 ~L~~l~~~~~~R~~ 323 (323)
T PRK10888 310 ALIGLAHIAVQRDR 323 (323)
T ss_pred HHHHHHHHHHhCcC
Confidence 99999999999964
No 6
>PLN02857 octaprenyl-diphosphate synthase
Probab=100.00 E-value=1.6e-57 Score=446.37 Aligned_cols=273 Identities=24% Similarity=0.377 Sum_probs=240.8
Q ss_pred hcHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHhhhcCCCCcchHHHHHHHHHHhCC------CchhhHHHHHHHHH
Q 019903 40 FDLKTYWTTLITEIDQNLEKAITVKYPEQIYESMRYSVLAKGTKRAPPVMCVAACELFGV------NRIAAFPTACALEM 113 (334)
Q Consensus 40 ~~~~~~~~~~~~~i~~~L~~~~~~~~~~~l~~~~~y~~~~~gGKrlRp~l~ll~~~~~g~------~~~~~~~lA~avEl 113 (334)
.++..++...++.|++.|.+.+....| .+.++++|.+. .||||+||+|++++++++|. ..++++.+|+++||
T Consensus 95 ~~~~~~v~~~l~~v~~~l~~~~~~~~~-~l~~~~~~~~~-~gGKriRP~Lvll~a~a~g~~~g~~~~~~~~~~lAaaiEl 172 (416)
T PLN02857 95 SELFEPVADDLQQLNDNLQSIVGAENP-VLMSAAEQIFG-AGGKRMRPALVFLVSRATAELAGLKELTTEHRRLAEITEM 172 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCch-HHHHHHHHHHh-CCCccHhHHHHHHHHHHhccccCCCcchHHHHHHHHHHHH
Confidence 345566788899999999999876654 58999999887 49999999999999998852 24678999999999
Q ss_pred HHHHHHHHhCCCCCCCCCCCCCCCCCCCcCChHHHHHHHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHhhhhh
Q 019903 114 VHAASLIHDDLPCMDDDPSRRGQPSNHTVYGVDIAILAGDALFPLGFQHIVSHTPPHLVPEPRVLRVIAEIARAVGSTGM 193 (334)
Q Consensus 114 iH~asLIhDDIp~iD~s~~RRG~pt~h~~~G~~~Avl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 193 (334)
||+|||||||| ||+|++|||+||+|.+||+++|||+||||+++|++.+++.. ...+++++.++.. .+
T Consensus 173 iH~ASLIHDDI--~D~s~~RRG~pt~h~~~G~~~AIlaGD~L~a~A~~~la~~~------~~~~~~~~s~~~~-----~l 239 (416)
T PLN02857 173 IHTASLIHDDV--LDESDMRRGKETVHQLYGTRVAVLAGDFMFAQSSWYLANLD------NLEVIKLISQVIK-----DF 239 (416)
T ss_pred HHHHHHHHCcc--ccCCcccCCCCCccccCCcceeeeHHHHHHHHHHHHHHcCC------cHHHHHHHHHHHH-----HH
Confidence 99999999999 99999999999999999999999999999999999998642 3456666665543 47
Q ss_pred hhHhhhhccC------ChhHHHHHHHhhHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHhhHhhhhcCCC-
Q 019903 194 AAGQFLDLEG------EPNLVEFVQEKKFGEMSECSAVCGGFLAGADDDEIQSLRRYGRAVGVLYQVVDDILEAKAQTP- 266 (334)
Q Consensus 194 ~~GQ~lDl~~------~~~~y~~i~~~KTa~Lf~~a~~lGa~lag~~~~~~~~l~~~G~~lG~afQi~DD~lD~~~~~~- 266 (334)
+.||+.|+.+ +.++|.+++.+|||+||+.+|++|++++|++++.++.+++||+++|+||||+||++|++++++
T Consensus 240 ~~Gei~q~~~~~~~~~s~~~Yl~~i~~KTa~L~~~a~~~gallaga~~~~~~~l~~fG~~LGiAFQI~DDiLD~~~~~~~ 319 (416)
T PLN02857 240 ASGEIKQASSLFDCDVTLDEYLLKSYYKTASLIAASTKSAAIFSGVDSSVKEQMYEYGKNLGLAFQVVDDILDFTQSTEQ 319 (416)
T ss_pred HhhHHHHHhcccCCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHH
Confidence 8898887553 678999999999999999999999999999999999999999999999999999999998753
Q ss_pred ---CCchHHhhcCchHHHHh---------------------------------HHHHHHHHHHHHHHHHHHHHhhccCCC
Q 019903 267 ---RDEEKKKKKGKSYVAFY---------------------------------GVEKAMEVAEELRAKAKEELDRFKKYG 310 (334)
Q Consensus 267 ---~~~~Dl~~~k~t~~~~~---------------------------------gle~a~~~a~~~~~~A~~~L~~lp~~~ 310 (334)
..++|+.+||.|+|.++ |+++|++++++|.++|++.|+.||. +
T Consensus 320 ~GK~~g~DL~eGK~TlPli~al~~~~~l~~~l~~~~~~~~~~~~~~~lv~~~Ggie~a~~~a~~~~~~A~~~L~~Lp~-~ 398 (416)
T PLN02857 320 LGKPAGSDLAKGNLTAPVIFALEKEPELREIIESEFCEEGSLEEAIELVNEGGGIERAQELAKEKADLAIQNLECLPR-G 398 (416)
T ss_pred hCCCcchhhhcCCccHHHHHHHhcChHHHHHHhhccCCHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhCCC-C
Confidence 46799999999998765 7889999999999999999999998 6
Q ss_pred CChHHHHHHHHHHHhccc
Q 019903 311 DNVLPLYSFIDYAADREF 328 (334)
Q Consensus 311 ~~~~~L~~l~~~~~~R~~ 328 (334)
+.++.|..|++|+++|.+
T Consensus 399 ~~~~~L~~L~~~~~~R~~ 416 (416)
T PLN02857 399 AFRSSLEDMVDYNLERIY 416 (416)
T ss_pred HHHHHHHHHHHHHHhccC
Confidence 778899999999999964
No 7
>TIGR02749 prenyl_cyano solanesyl diphosphate synthase. Members of this family all are from cyanobacteria or plastid-containing eukaryotes. A member from Arabidopsis (where both plastoquinone and ubiquinone contain the C(45) prenyl moiety) was characterized by heterologous expression as a solanesyl diphosphate synthase.
Probab=100.00 E-value=2.1e-57 Score=435.01 Aligned_cols=271 Identities=23% Similarity=0.314 Sum_probs=240.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHhhhcCCCCcchHHHHHHHHHHhCCC---chhhHHHHHHHHHHHHHH
Q 019903 42 LKTYWTTLITEIDQNLEKAITVKYPEQIYESMRYSVLAKGTKRAPPVMCVAACELFGVN---RIAAFPTACALEMVHAAS 118 (334)
Q Consensus 42 ~~~~~~~~~~~i~~~L~~~~~~~~~~~l~~~~~y~~~~~gGKrlRp~l~ll~~~~~g~~---~~~~~~lA~avEliH~as 118 (334)
+..++...+..|++.|.+.+....| .+.++++|.+. .||||+||.|++++++++|+. ++..+.+|+++||||+||
T Consensus 6 ~~~~~~~~l~~v~~~l~~~~~~~~~-~l~~~~~~~~~-~gGKrlRp~l~ll~~~~~~~~~~~~~~~~~~A~avEliH~as 83 (322)
T TIGR02749 6 LFAPVEDDLYLLTDNLKSLVGARHP-ILYAAAEHLFS-AGGKRLRPAIVLLVSRATAEQQELTPRHRRLAEITEMIHTAS 83 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCh-HHHHHHHHHHH-CCCchHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHHHH
Confidence 5567788899999999999987654 58999999886 499999999999999998753 367889999999999999
Q ss_pred HHHhCCCCCCCCCCCCCCCCCCCcCChHHHHHHHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHhhhhhhhHhh
Q 019903 119 LIHDDLPCMDDDPSRRGQPSNHTVYGVDIAILAGDALFPLGFQHIVSHTPPHLVPEPRVLRVIAEIARAVGSTGMAAGQF 198 (334)
Q Consensus 119 LIhDDIp~iD~s~~RRG~pt~h~~~G~~~Avl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~GQ~ 198 (334)
|||||| ||+|++|||+||+|++||+++|||+||||++.+++.+++.. ...+.+.+.++. ..++.||+
T Consensus 84 LiHDDi--iD~s~~RRG~pt~h~~~G~~~Ail~GD~l~~~a~~~l~~~~------~~~~~~~~~~~~-----~~~~~Gq~ 150 (322)
T TIGR02749 84 LVHDDV--IDESDTRRGIETVHSLFGTRVAVLAGDFLFAQASWYLANLE------NLEVVKLISKVI-----TDFAEGEI 150 (322)
T ss_pred HHHccc--ccCccccCCCccHHHHhCcHHHHHHHHHHHHHHHHHHHhcC------CHHHHHHHHHHH-----HHHHHHHH
Confidence 999999 99999999999999999999999999999999999998642 335556665554 35789999
Q ss_pred hhccC------ChhHHHHHHHhhHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHhhHhhhhcCCC----CC
Q 019903 199 LDLEG------EPNLVEFVQEKKFGEMSECSAVCGGFLAGADDDEIQSLRRYGRAVGVLYQVVDDILEAKAQTP----RD 268 (334)
Q Consensus 199 lDl~~------~~~~y~~i~~~KTa~Lf~~a~~lGa~lag~~~~~~~~l~~~G~~lG~afQi~DD~lD~~~~~~----~~ 268 (334)
+|+.+ +.++|.+|+.+|||+||++||++|++++|++++.++.+++||+++|+||||+||++|++++++ ..
T Consensus 151 ~~~~~~~~~~~~~~~y~~~~~~KTa~L~~~~~~~ga~~ag~~~~~~~~l~~~G~~lG~aFQi~DDild~~~~~~~~GK~~ 230 (322)
T TIGR02749 151 KQGLNQFDSDLSLEDYLEKSFYKTASLVAASSKAAAVLSDVPSQVANDLYEYGKHLGLAFQVVDDILDFTGSTEQLGKPA 230 (322)
T ss_pred HHHHcccCCCCCHHHHHHHHHccHHHHHHHHHHHHHHHcCcCHHHHHHHHHHHHHHHHHHHHHHHhccCCCChHhhCCCh
Confidence 98653 678999999999999999999999999999999999999999999999999999999998753 46
Q ss_pred chHHhhcCchHHHHhH---------------------------------HHHHHHHHHHHHHHHHHHHhhccCCCCChHH
Q 019903 269 EEKKKKKGKSYVAFYG---------------------------------VEKAMEVAEELRAKAKEELDRFKKYGDNVLP 315 (334)
Q Consensus 269 ~~Dl~~~k~t~~~~~g---------------------------------le~a~~~a~~~~~~A~~~L~~lp~~~~~~~~ 315 (334)
++|+.+||.|+|.+++ ++++++++++|.++|++.|+.+|. ++.++.
T Consensus 231 g~Dl~~Gk~Tlp~l~al~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~ga~~~a~~~~~~~~~~A~~~L~~lp~-~~~~~~ 309 (322)
T TIGR02749 231 GSDLMKGNLTAPVLFALEEEPKLSELIEREFSQKGDLEQALSLVRKSGGIKKARELAKEQAQLALQSLSFLPP-SPPREA 309 (322)
T ss_pred hHHHhCCCchHHHHHHHhcChHHHHHHHhccCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHhCCC-CHHHHH
Confidence 7999999999987653 688999999999999999999998 577899
Q ss_pred HHHHHHHHHhccc
Q 019903 316 LYSFIDYAADREF 328 (334)
Q Consensus 316 L~~l~~~~~~R~~ 328 (334)
|.+|++++.+|.+
T Consensus 310 L~~l~~~~~~R~~ 322 (322)
T TIGR02749 310 LKELVHFVLSRLY 322 (322)
T ss_pred HHHHHHHHHhcCC
Confidence 9999999999974
No 8
>CHL00151 preA prenyl transferase; Reviewed
Probab=100.00 E-value=3.8e-57 Score=433.66 Aligned_cols=272 Identities=24% Similarity=0.333 Sum_probs=240.5
Q ss_pred hcHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHhhhcCCCCcchHHHHHHHHHHhCCCc---hhhHHHHHHHHHHHH
Q 019903 40 FDLKTYWTTLITEIDQNLEKAITVKYPEQIYESMRYSVLAKGTKRAPPVMCVAACELFGVNR---IAAFPTACALEMVHA 116 (334)
Q Consensus 40 ~~~~~~~~~~~~~i~~~L~~~~~~~~~~~l~~~~~y~~~~~gGKrlRp~l~ll~~~~~g~~~---~~~~~lA~avEliH~ 116 (334)
.++..++...+..|++.|.+.+....| .+.++++|.+.. ||||+||.|++++++++|++. ..++.+|+++|++|+
T Consensus 5 ~~~~~~~~~~l~~i~~~l~~~~~~~~~-~l~~~~~~~~~~-gGKr~Rp~L~ll~~~~~~~~~~~~~~~~~~A~aiEllH~ 82 (323)
T CHL00151 5 SNLLTPIEEELLILEDNLKKLIGSGHP-ILYAAAKHLFSA-GGKRIRPAIVLLVAKATGGNMEIKTSQQRLAEITEIIHT 82 (323)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCh-hHHHHHHHHHhc-CCccHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHH
Confidence 456778889999999999999887655 689999998874 999999999999999998753 456789999999999
Q ss_pred HHHHHhCCCCCCCCCCCCCCCCCCCcCChHHHHHHHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHhhhhhhhH
Q 019903 117 ASLIHDDLPCMDDDPSRRGQPSNHTVYGVDIAILAGDALFPLGFQHIVSHTPPHLVPEPRVLRVIAEIARAVGSTGMAAG 196 (334)
Q Consensus 117 asLIhDDIp~iD~s~~RRG~pt~h~~~G~~~Avl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~G 196 (334)
|||||||| ||+|++|||+||+|.+||+++|||+||||++.+|+.++... ...+.+.+.++.. .++.|
T Consensus 83 asLiHDDi--~D~s~~RRG~pt~h~~~G~~~Ail~GD~l~~~a~~~l~~~~------~~~~~~~~~~~~~-----~l~~G 149 (323)
T CHL00151 83 ASLVHDDV--IDECSIRRGIPTVHKIFGTKIAVLAGDFLFAQSSWYLANLN------NLEVVKLISKVIT-----DFAEG 149 (323)
T ss_pred HHHHHccc--ccCccccCCCccHHHHhCCcchhhhHHHHHHHHHHHHHhCC------ChHHHHHHHHHHH-----HHHHH
Confidence 99999999 99999999999999999999999999999999999998643 2344455555443 46889
Q ss_pred hhhhccC------ChhHHHHHHHhhHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHhhHhhhhcCCC----
Q 019903 197 QFLDLEG------EPNLVEFVQEKKFGEMSECSAVCGGFLAGADDDEIQSLRRYGRAVGVLYQVVDDILEAKAQTP---- 266 (334)
Q Consensus 197 Q~lDl~~------~~~~y~~i~~~KTa~Lf~~a~~lGa~lag~~~~~~~~l~~~G~~lG~afQi~DD~lD~~~~~~---- 266 (334)
|.++..+ +.+.|.+++.+|||+||++||.+|++++|.+++.++.+++||.++|+||||+||++|++++++
T Consensus 150 ~~~~~~~~~~~~~~~~~yl~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~G~~lG~aFQi~DDilD~~~~~~~~GK 229 (323)
T CHL00151 150 EIRQGLVQFDTTLSILNYIEKSFYKTASLIAASCKAAALLSDADEKDHNDFYLYGKHLGLAFQIIDDVLDITSSTESLGK 229 (323)
T ss_pred HHHHHhcCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhcccChhhhCC
Confidence 9887543 668899999999999999999999999999999999999999999999999999999998754
Q ss_pred CCchHHhhcCchHHHHhH---------------------------------HHHHHHHHHHHHHHHHHHHhhccCCCCCh
Q 019903 267 RDEEKKKKKGKSYVAFYG---------------------------------VEKAMEVAEELRAKAKEELDRFKKYGDNV 313 (334)
Q Consensus 267 ~~~~Dl~~~k~t~~~~~g---------------------------------le~a~~~a~~~~~~A~~~L~~lp~~~~~~ 313 (334)
..++|+++||.|+|.+++ ++++++++++|.++|+++|+.||. ++.+
T Consensus 230 ~~g~Dl~eGk~Tlp~l~al~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~g~~~~a~~~a~~~~~~A~~~L~~lp~-~~~~ 308 (323)
T CHL00151 230 PIGSDLKNGNLTAPVLFALTQNSKLAKLIEREFCETKDISQALQIIKETNGIEKAKDLALEHMQAAIQCLKFLPP-SSAK 308 (323)
T ss_pred CchhhHhcCchHHHHHHHHhcChHHHHHHHHhcCCHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHHHhCCC-CHHH
Confidence 367999999999998765 789999999999999999999998 6778
Q ss_pred HHHHHHHHHHHhcc
Q 019903 314 LPLYSFIDYAADRE 327 (334)
Q Consensus 314 ~~L~~l~~~~~~R~ 327 (334)
+.|..+++++++|.
T Consensus 309 ~~L~~l~~~~~~R~ 322 (323)
T CHL00151 309 DSLIEIANFIINRL 322 (323)
T ss_pred HHHHHHHHHHHhcc
Confidence 99999999999986
No 9
>KOG0776 consensus Geranylgeranyl pyrophosphate synthase/Polyprenyl synthetase [Coenzyme transport and metabolism]
Probab=100.00 E-value=4.4e-57 Score=430.87 Aligned_cols=284 Identities=35% Similarity=0.541 Sum_probs=257.7
Q ss_pred hhcHHHHHHHHHHHHHHHHHHhhccC-CchhHHHHHHHhhhcCCCCcchHHHHHHHHHHhC-CCchhhHHHHHHHHHHHH
Q 019903 39 QFDLKTYWTTLITEIDQNLEKAITVK-YPEQIYESMRYSVLAKGTKRAPPVMCVAACELFG-VNRIAAFPTACALEMVHA 116 (334)
Q Consensus 39 ~~~~~~~~~~~~~~i~~~L~~~~~~~-~~~~l~~~~~y~~~~~gGKrlRp~l~ll~~~~~g-~~~~~~~~lA~avEliH~ 116 (334)
.+|+..++....+.+.+.+...++.. .|..+.+.++|.+.. +|||+||.+|+++|+++| |....+..+|+++||||+
T Consensus 64 ~~d~~~~~~~~~~~ln~~l~~~~~~~~~~~~i~~a~ry~~la-~gKr~rP~l~~~~~e~~~~g~~~~q~~~A~i~EMIHt 142 (384)
T KOG0776|consen 64 LFDELSYMARKARSLNGALHYAVPLANEPLLISEAMRYLLLA-GGKRVRPLLCLAACELVGSGDESSQRSLAEIVEMIHT 142 (384)
T ss_pred hhhHHHHHHHHHHHHhhhhhhhcccccccchhHHHHHHHHHh-cccccCchhhhhHHHhccccccHHHHHHHHHHHHHHH
Confidence 36788889889999999999999866 677899999999886 889999999999999999 888999999999999999
Q ss_pred HHHHHhCCCCCCCCCCCCCCCCCCCcCChHHHHHHHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHhhhhhhhH
Q 019903 117 ASLIHDDLPCMDDDPSRRGQPSNHTVYGVDIAILAGDALFPLGFQHIVSHTPPHLVPEPRVLRVIAEIARAVGSTGMAAG 196 (334)
Q Consensus 117 asLIhDDIp~iD~s~~RRG~pt~h~~~G~~~Avl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~G 196 (334)
+|||||||||||++++|||+||.|+.||+++|||+||||++.|++.++.+.+. ...+.+.+++.++++..+..+...|
T Consensus 143 aSLIHDDv~~mD~~d~RRGkpt~h~vfG~k~AvLaGD~LLa~A~~~la~l~n~--~v~elm~~aI~dLv~ge~~~~~~~~ 220 (384)
T KOG0776|consen 143 ASLIHDDVPCMDDADLRRGKPTNHKVFGNKMAVLAGDALLALASEHLASLENP--VVVELMASAIADLVRGEFTQGLVAG 220 (384)
T ss_pred HHHHhcCcccccccccccCCCCcchhhcchhhhhhhHHHHHHHHHHHHhccCc--hHHHHHHHHHHHHHHhhhhcccccc
Confidence 99999999999999999999999999999999999999999999999987653 4556777888888887776777777
Q ss_pred hhhhccC-ChhHHHHHHHhhHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHhhHhhhhcCCCC----CchH
Q 019903 197 QFLDLEG-EPNLVEFVQEKKFGEMSECSAVCGGFLAGADDDEIQSLRRYGRAVGVLYQVVDDILEAKAQTPR----DEEK 271 (334)
Q Consensus 197 Q~lDl~~-~~~~y~~i~~~KTa~Lf~~a~~lGa~lag~~~~~~~~l~~~G~~lG~afQi~DD~lD~~~~~~~----~~~D 271 (334)
|.+|... ..++|+.+..+|||+|++.+|++|++++|.++++++.+++||+++|++||+.||++|++...+. .+.|
T Consensus 221 ~~~d~~~~~~e~~e~~~~~KTAsLla~Sc~~~aILgg~s~ev~e~~~~yGR~lGL~fQvvDDildftkss~elGK~ag~D 300 (384)
T KOG0776|consen 221 EGLDLDDVGLEYLEFKTLLKTASLLAKSCVAAAILGGGSEEVIEAAFEYGRCLGLAFQVVDDILDFTKSSEELGKTAGKD 300 (384)
T ss_pred cccccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhcccCcccchhhcCcchhhh
Confidence 7788877 7889999999999999999999999999999999999999999999999999999999876643 5689
Q ss_pred HhhcCchHHHHh------------------------------HHHHHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHH
Q 019903 272 KKKKGKSYVAFY------------------------------GVEKAMEVAEELRAKAKEELDRFKKYGDNVLPLYSFID 321 (334)
Q Consensus 272 l~~~k~t~~~~~------------------------------gle~a~~~a~~~~~~A~~~L~~lp~~~~~~~~L~~l~~ 321 (334)
+..|+.|+|.++ +++.|..++++|.++|++.|+.||. ++.|++|+.|+.
T Consensus 301 l~~g~lT~P~Lf~~e~~pe~~e~l~~~~~e~~~~~~~~k~v~~v~~a~~la~~~~~~Al~~l~~~p~-s~ar~aL~~l~~ 379 (384)
T KOG0776|consen 301 LKAGKLTAPVLFALEKSPELREKLEREFSEPLDGFDADKAVPGVALAKYLARRHNNKALEALQSLPR-SEARSALENLVL 379 (384)
T ss_pred hhhccccccchhhhhhChHHHHHHHHhccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC-chHHHHHHHHHH
Confidence 999999987543 5788999999999999999999999 799999999999
Q ss_pred HHHhc
Q 019903 322 YAADR 326 (334)
Q Consensus 322 ~~~~R 326 (334)
++.+|
T Consensus 380 ~~~~r 384 (384)
T KOG0776|consen 380 AVLTR 384 (384)
T ss_pred HHhcC
Confidence 99876
No 10
>cd00685 Trans_IPPS_HT Trans-Isoprenyl Diphosphate Synthases, head-to-tail. These trans-Isoprenyl Diphosphate Synthases (Trans_IPPS) catalyze head-to-tail (HT) (1'-4) condensation reactions. This CD includes all-trans (E)-isoprenyl diphosphate synthases which synthesize various chain length (C10, C15, C20, C25, C30, C35, C40, C45, and C50) linear isoprenyl diphosphates from precursors, isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). They catalyze the successive 1'-4 condensation of the 5-carbon IPP to allylic substrates geranyl-, farnesyl-, or geranylgeranyl-diphosphate. Isoprenoid chain elongation reactions proceed via electrophilic alkylations in which a new carbon-carbon single bond is generated through interaction between a highly reactive electron-deficient allylic carbocation and an electron-rich carbon-carbon double bond. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions (DDXX(XX
Probab=100.00 E-value=3.4e-52 Score=388.15 Aligned_cols=245 Identities=31% Similarity=0.496 Sum_probs=219.3
Q ss_pred hhHHHHHHHhhhcCCCCcchHHHHHHHHHHhCCCc-hhhHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCCcCCh
Q 019903 67 EQIYESMRYSVLAKGTKRAPPVMCVAACELFGVNR-IAAFPTACALEMVHAASLIHDDLPCMDDDPSRRGQPSNHTVYGV 145 (334)
Q Consensus 67 ~~l~~~~~y~~~~~gGKrlRp~l~ll~~~~~g~~~-~~~~~lA~avEliH~asLIhDDIp~iD~s~~RRG~pt~h~~~G~ 145 (334)
+.+.++++|.+. .+|||+||.+++++++++|+++ +.+..+|+++|++|+|||||||| ||+|.+|||+||+|.+||+
T Consensus 4 ~~l~~~~~~~~~-~~GK~~Rp~l~~~~~~~~g~~~~~~~~~la~aiEllh~asLIhDDI--~D~s~~RRG~p~~~~~~G~ 80 (259)
T cd00685 4 ELLREALRYLLL-AGGKRLRPLLVLLAARALGGPELEAALRLAAAIELLHTASLVHDDV--MDNSDLRRGKPTVHKVFGN 80 (259)
T ss_pred hHHHHHHHHHHH-cCCccHhHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHHHhhh--ccCCcccCCCCcHHHHhCc
Confidence 458899999876 5999999999999999999988 89999999999999999999999 9999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHhhhhhhhHhhhhccC------ChhHHHHHHHhhHHHH
Q 019903 146 DIAILAGDALFPLGFQHIVSHTPPHLVPEPRVLRVIAEIARAVGSTGMAAGQFLDLEG------EPNLVEFVQEKKFGEM 219 (334)
Q Consensus 146 ~~Avl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~GQ~lDl~~------~~~~y~~i~~~KTa~L 219 (334)
..|||+||+|++.+++.+++... + ...+++..+.+.+ .+++.||++|+.+ +++.|.+|+.+|||+|
T Consensus 81 ~~Ail~gd~l~~~a~~~l~~~~~----~--~~~~~~~~~~~~~--~~~~~GQ~~d~~~~~~~~~~~~~y~~~~~~KT~~l 152 (259)
T cd00685 81 ATAILAGDYLLARAFELLARLGN----P--YYPRALELFSEAI--LELVEGQLLDLLSEYDTDVTEEEYLRIIRLKTAAL 152 (259)
T ss_pred ccHHHHHHHHHHHHHHHHHhCCC----c--cHHHHHHHHHHHH--HHHHHHHHHHHHccCCCCCCHHHHHHHHHHhHHHH
Confidence 99999999999999999987532 1 2234444444443 4689999999876 5789999999999999
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHhhHhhhhcCCC----CCchHHhhcCchHHHHhHHHHHHHHHHHH
Q 019903 220 SECSAVCGGFLAGADDDEIQSLRRYGRAVGVLYQVVDDILEAKAQTP----RDEEKKKKKGKSYVAFYGVEKAMEVAEEL 295 (334)
Q Consensus 220 f~~a~~lGa~lag~~~~~~~~l~~~G~~lG~afQi~DD~lD~~~~~~----~~~~Dl~~~k~t~~~~~gle~a~~~a~~~ 295 (334)
|.++|.+|++++|++++.++.+++||.++|++|||+||++|++++++ ..++|+++||.|||.++++ ++.++.|
T Consensus 153 ~~~~~~~~a~l~~~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~gK~~~~Di~~gk~T~~~~~~l---~~~~~~~ 229 (259)
T cd00685 153 FAAAPLLGALLAGADEEEAEALKRFGRNLGLAFQIQDDILDLFGDPETLGKPVGSDLREGKCTLPVLLAL---RELAREY 229 (259)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCChHHHCCCcchHHHcCCchHHHHHHH---HHHHHHH
Confidence 99999999999999999999999999999999999999999998753 3579999999999999998 8899999
Q ss_pred HHHHHHHHhhccCCCCChHHHHHHHHHHHhc
Q 019903 296 RAKAKEELDRFKKYGDNVLPLYSFIDYAADR 326 (334)
Q Consensus 296 ~~~A~~~L~~lp~~~~~~~~L~~l~~~~~~R 326 (334)
.++|+..|+.+|. +..++.|.++++++.+|
T Consensus 230 ~~~a~~~l~~~~~-~~~~~~l~~~~~~~~~r 259 (259)
T cd00685 230 EEKALEALKALPE-SPAREALRALADFILER 259 (259)
T ss_pred HHHHHHHHHcCCC-cHHHHHHHHHHHHHHcC
Confidence 9999999999997 34578899999999887
No 11
>PF00348 polyprenyl_synt: Polyprenyl synthetase; InterPro: IPR000092 A variety of isoprenoid compounds are synthesized by various organisms. For example in eukaryotes the isoprenoid biosynthetic pathway is responsible for the synthesis of a variety of end products including cholesterol, dolichol, ubiquinone or coenzyme Q. In bacteria this pathway leads to the synthesis of isopentenyl tRNA, isoprenoid quinones, and sugar carrier lipids. Among the enzymes that participate in that pathway, are a number of polyprenyl synthetase enzymes which catalyze a 1'4-condensation between 5 carbon isoprene units. It has been shown [, , , , ] that all the above enzymes share some regions of sequence similarity. Two of these regions are rich in aspartic-acid residues and could be involved in the catalytic mechanism and/or the binding of the substrates.; GO: 0008299 isoprenoid biosynthetic process; PDB: 3AQC_B 3AQB_D 3Q1O_C 3LLW_B 3EFQ_A 3EGT_A 3DYG_A 2P1C_A 2OGD_A 2EWG_B ....
Probab=100.00 E-value=1e-49 Score=371.62 Aligned_cols=224 Identities=35% Similarity=0.530 Sum_probs=195.2
Q ss_pred HHHHHhhhcCCCCcchHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCCcCChHHHHH
Q 019903 71 ESMRYSVLAKGTKRAPPVMCVAACELFGVNRIAAFPTACALEMVHAASLIHDDLPCMDDDPSRRGQPSNHTVYGVDIAIL 150 (334)
Q Consensus 71 ~~~~y~~~~~gGKrlRp~l~ll~~~~~g~~~~~~~~lA~avEliH~asLIhDDIp~iD~s~~RRG~pt~h~~~G~~~Avl 150 (334)
+++.|++. .||||+||.|++++++++|++++.+..+|+++||||++||||||| ||+|++|||+||+|.+||++.|||
T Consensus 3 ~~~~~~~~-~~GK~~Rp~l~~~~~~~~~~~~~~~~~~a~avEliH~asLIhDDI--~D~s~~RRG~pt~~~~~G~~~Ail 79 (260)
T PF00348_consen 3 EPARYYIL-RGGKRIRPLLVLLAAEALGGDPEKAIPLAAAVELIHAASLIHDDI--IDNSDLRRGKPTVHKKFGNAIAIL 79 (260)
T ss_dssp HHHHHHHH-SSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHH--HTTCSEETTEECHHHHHHHHHHHH
T ss_pred HHHHHHhh-CCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhh--hcccccCCCCccccccccccchhh
Confidence 56677776 499999999999999999999999999999999999999999999 999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHhhhhhhhHhhhhccC-----ChhHHHHHHHhhHHHHHHHHHH
Q 019903 151 AGDALFPLGFQHIVSHTPPHLVPEPRVLRVIAEIARAVGSTGMAAGQFLDLEG-----EPNLVEFVQEKKFGEMSECSAV 225 (334)
Q Consensus 151 ~GD~L~~~a~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~GQ~lDl~~-----~~~~y~~i~~~KTa~Lf~~a~~ 225 (334)
+||+|++.+++.+++.... .+......++..+...+ .....||..|+.+ ++++|.+|+++|||+||++||+
T Consensus 80 ~gd~ll~~a~~~l~~~~~~--~~~~~~~~i~~~~~~~~--~~~~~~q~~d~~~~~~~~~~~~y~~i~~~KTg~l~~~~~~ 155 (260)
T PF00348_consen 80 AGDYLLALAFELLARLGHF--DPSERVLRILELFIEAL--IEGEIGQALDLANEDKDPTEEEYLEIIRLKTGSLFALACQ 155 (260)
T ss_dssp HHHHHHHHHHHHHHHHCHS--HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHTTTSSTSHHHHHHHHHHHTHHHHHHHHH
T ss_pred hchHHHHHHHHHHHHhhcc--cchHHHHHHHHHHHHhc--ccceeehhhccccccccccHHHHHHHHhhcchHHHHHHHH
Confidence 9999999999999986411 12345555665555443 2345679999875 6789999999999999999999
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHHhHHhhHhhhhcCC----CCCchHHhhcCchHHHHhHHHHHHHHHHHHHHHHHH
Q 019903 226 CGGFLAGADDDEIQSLRRYGRAVGVLYQVVDDILEAKAQT----PRDEEKKKKKGKSYVAFYGVEKAMEVAEELRAKAKE 301 (334)
Q Consensus 226 lGa~lag~~~~~~~~l~~~G~~lG~afQi~DD~lD~~~~~----~~~~~Dl~~~k~t~~~~~gle~a~~~a~~~~~~A~~ 301 (334)
+|++++|.+++.++.+++||+++|++|||+||++|+++++ +..++|+.+||+|+|.+++++.+.+..++...++..
T Consensus 156 ~ga~lag~~~~~~~~l~~~g~~lG~afQi~DD~~d~~~~~~~~gK~~~~Dl~~gk~Tlp~~~al~~~~~~~~~~l~~~~~ 235 (260)
T PF00348_consen 156 LGAILAGADEEQIEALREFGRHLGIAFQIRDDLLDLFGDEEELGKPVGSDLKEGKPTLPVLHALERAREELRELLQEAYG 235 (260)
T ss_dssp HHHHHTTSGHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHSSTTTHHHHTTTSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccchhHHHHHHHHHHHHHHHHHhhhhhhhhccCcHHHhcccchhHHhcCcccHHHHHHHHhCHHHHHHHHHHHHc
Confidence 9999999999999999999999999999999999999864 345799999999999999999988777777665543
No 12
>cd00867 Trans_IPPS Trans-Isoprenyl Diphosphate Synthases. Trans-Isoprenyl Diphosphate Synthases (Trans_IPPS) of class 1 isoprenoid biosynthesis enzymes which either synthesis geranyl/farnesyl diphosphates (GPP/FPP) or longer chained products from isoprene precursors, isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), or use geranyl (C10)-, farnesyl (C15)-, or geranylgeranyl (C20)-diphosphate as substrate. These enzymes produce a myriad of precursors for such end products as steroids, cholesterol, sesquiterpenes, heme, carotenoids, retinoids, diterpenes, ubiquinone, and archaeal ether linked lipids; and are widely distributed among archaea, bacteria, and eukareya. The enzymes in this family share the same 'isoprenoid synthase fold' and include the head-to-tail (HT) IPPS which catalyze the successive 1'-4 condensation of the 5-carbon IPP to the growing isoprene chain to form linear, all-trans, C10-, C15-, C20- C25-, C30-, C35-, C40-, C45-, or C50-isoprenoid diphosphates
Probab=100.00 E-value=1.8e-38 Score=290.59 Aligned_cols=225 Identities=30% Similarity=0.434 Sum_probs=195.3
Q ss_pred chHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCCc-CChHHHHHHHHHHHHHHHHHH
Q 019903 85 APPVMCVAACELFGVNRIAAFPTACALEMVHAASLIHDDLPCMDDDPSRRGQPSNHTV-YGVDIAILAGDALFPLGFQHI 163 (334)
Q Consensus 85 lRp~l~ll~~~~~g~~~~~~~~lA~avEliH~asLIhDDIp~iD~s~~RRG~pt~h~~-~G~~~Avl~GD~L~~~a~~~l 163 (334)
+||.+++++++++|++.+.+..+++++|+||++++||||| +|++..|||+|++|.+ ||...|+++||+++..++..+
T Consensus 1 ~r~~~~~~~~~~~~~~~~~~~~~a~ave~l~~~~li~DDI--~D~~~~rrg~~~~~~~~~g~~~ai~~gd~l~~~a~~~l 78 (236)
T cd00867 1 SRPLLVLLLARALGGDLEAALRLAAAVELLHAASLVHDDI--VDDSDLRRGKPTAHLRRFGNALAILAGDYLLARAFQLL 78 (236)
T ss_pred CcHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHccc--ccCCccCCCCccHhHHhhCHhHHHHHHHHHHHHHHHHH
Confidence 5999999999999999999999999999999999999999 9999999999999999 999999999999999999999
Q ss_pred HhcCCCCCCChHHHHHHHHHHHHHHhhhhhhhHhhhhccC------ChhHHHHHHHhhHHHHHHHHHHHHHHhcCCCHHH
Q 019903 164 VSHTPPHLVPEPRVLRVIAEIARAVGSTGMAAGQFLDLEG------EPNLVEFVQEKKFGEMSECSAVCGGFLAGADDDE 237 (334)
Q Consensus 164 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~GQ~lDl~~------~~~~y~~i~~~KTa~Lf~~a~~lGa~lag~~~~~ 237 (334)
++.. ...+.+++.+.. .+++.||.+|+.+ +.++|.+++++|||.+|..+|..|+++++.+++.
T Consensus 79 ~~~~------~~~~~~~~~~~~-----~~~~~Gq~~Dl~~~~~~~~t~~~y~~~~~~Kta~l~~~~~~~~~~~~~~~~~~ 147 (236)
T cd00867 79 ARLG------YPRALELFAEAL-----RELLEGQALDLEFERDTYETLDEYLEYCRYKTAGLVGLLCLLGAGLSGADDEQ 147 (236)
T ss_pred HhCC------hHHHHHHHHHHH-----HHHHHHHHHHHHhccCCCCCHHHHHHHHHhccHHHHHHHHHHHHHHcCcCHHH
Confidence 8742 234455554443 4689999999875 6789999999999999999999999999999989
Q ss_pred HHHHHHHHHHHHHHHhHHhhHhhhhcCCC---CCchHHhhcCchHHHHhHHHHHHHHHHHHHHHHHHHHhhccCCC-CCh
Q 019903 238 IQSLRRYGRAVGVLYQVVDDILEAKAQTP---RDEEKKKKKGKSYVAFYGVEKAMEVAEELRAKAKEELDRFKKYG-DNV 313 (334)
Q Consensus 238 ~~~l~~~G~~lG~afQi~DD~lD~~~~~~---~~~~Dl~~~k~t~~~~~gle~a~~~a~~~~~~A~~~L~~lp~~~-~~~ 313 (334)
.+.++.||.++|+||||.||++|+.++.+ +.++|+.+||+|+|...+ .+.+.++.+++.+.+..+++.. ..+
T Consensus 148 ~~~~~~~~~~lG~a~Qi~dd~~D~~~d~~~~gk~~~D~~~gr~tlp~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (236)
T cd00867 148 AEALKDYGRALGLAFQLTDDLLDVFGDAEELGKVGSDLREGRITLPVILA----RERAAEYAEEAYAALEALPPSLPRAR 223 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccCChHHHCccHHHHHcCCchHHHHHH----HHHHHHHHHHHHHHHHhCCCCchHHH
Confidence 99999999999999999999999988753 267999999999999988 5566667777777777776521 146
Q ss_pred HHHHHHHHHHHhc
Q 019903 314 LPLYSFIDYAADR 326 (334)
Q Consensus 314 ~~L~~l~~~~~~R 326 (334)
..+..++.++.+|
T Consensus 224 ~~~~~~~~~~~~r 236 (236)
T cd00867 224 RALIALADFLYRR 236 (236)
T ss_pred HHHHHHHHHHHhC
Confidence 7888898888765
No 13
>KOG0777 consensus Geranylgeranyl pyrophosphate synthase/Polyprenyl synthetase [Coenzyme transport and metabolism]
Probab=100.00 E-value=2.4e-32 Score=242.72 Aligned_cols=239 Identities=19% Similarity=0.252 Sum_probs=201.7
Q ss_pred hhHHHHHHHhhhcCCCCcchHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCCcCChH
Q 019903 67 EQIYESMRYSVLAKGTKRAPPVMCVAACELFGVNRIAAFPTACALEMVHAASLIHDDLPCMDDDPSRRGQPSNHTVYGVD 146 (334)
Q Consensus 67 ~~l~~~~~y~~~~~gGKrlRp~l~ll~~~~~g~~~~~~~~lA~avEliH~asLIhDDIp~iD~s~~RRG~pt~h~~~G~~ 146 (334)
.-+.+|..|.+. .+||.+|--|.+...+++..+.++...+..++||+|++||+.||| .|++..|||.|++|..||++
T Consensus 21 ~ill~Py~yilq-~PGKqfR~~L~~afNhwl~~P~dkLaii~~ivemLHNsSLLIDDI--EDNs~LRRG~pvaHsIyGvp 97 (322)
T KOG0777|consen 21 SILLKPYNYILQ-KPGKQFRLNLIVAFNHWLNLPKDKLAIISQIVEMLHNSSLLIDDI--EDNSPLRRGQPVAHSIYGVP 97 (322)
T ss_pred HHHhchHHHHHh-CchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhccceeeccc--cccchhhcCCcchhhhccCc
Confidence 457788899876 599999999999999999999999999999999999999999999 99999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHhhhhhhhHhhhhccC-------ChhHHHHHHHhhHHHH
Q 019903 147 IAILAGDALFPLGFQHIVSHTPPHLVPEPRVLRVIAEIARAVGSTGMAAGQFLDLEG-------EPNLVEFVQEKKFGEM 219 (334)
Q Consensus 147 ~Avl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~GQ~lDl~~-------~~~~y~~i~~~KTa~L 219 (334)
..|++++|++++|.+.+..+. .+....++.+-. .+++.||.+|+.| +++.|..|+..|||-|
T Consensus 98 StINtANY~yFlalekV~qLd------hP~a~kifteqL-----leLHrGQGldIYWRD~~tcPtee~Yk~Mv~~KTGGL 166 (322)
T KOG0777|consen 98 STINTANYMYFLALEKVSQLD------HPNAIKIFTEQL-----LELHRGQGLDIYWRDFLTCPTEEMYKNMVMNKTGGL 166 (322)
T ss_pred chhhhhHHHHHHHHHHHHhcC------CchHHHHHHHHH-----HHHhcCCCcceeeeccCcCCCHHHHHHHHHHhcccH
Confidence 999999999999999998754 345666665532 3578999999999 7889999999999999
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHhhHhhhhcC----CCCCchHHhhcCchHHHH-------------
Q 019903 220 SECSAVCGGFLAGADDDEIQSLRRYGRAVGVLYQVVDDILEAKAQ----TPRDEEKKKKKGKSYVAF------------- 282 (334)
Q Consensus 220 f~~a~~lGa~lag~~~~~~~~l~~~G~~lG~afQi~DD~lD~~~~----~~~~~~Dl~~~k~t~~~~------------- 282 (334)
|.++.++.-.++... +.+..+-.-+|+.|||+||++++... ++...+|+.+||.++|.+
T Consensus 167 F~La~rLMqlfS~~k----edl~pl~n~LGl~fQIRDDY~NL~~keysenKsFaEDlTEGKfsFP~iHA~~t~~q~~Qvl 242 (322)
T KOG0777|consen 167 FRLALRLMQLFSHHK----EDLVPLINLLGLIFQIRDDYLNLKDKEYSENKSFAEDLTEGKFSFPIIHALKTKGQTEQVL 242 (322)
T ss_pred HHHHHHHHHHHHhcc----hhHHHHHHHHhHhhhhhhhhccchhhhhhcccchhhhhccCccCCcchhhhhcCCchHHHH
Confidence 999999988888544 35667888999999999999997543 334569999999888743
Q ss_pred -----------------------hHHHHHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHhcc
Q 019903 283 -----------------------YGVEKAMEVAEELRAKAKEELDRFKKYGDNVLPLYSFIDYAADRE 327 (334)
Q Consensus 283 -----------------------~gle~a~~~a~~~~~~A~~~L~~lp~~~~~~~~L~~l~~~~~~R~ 327 (334)
++++|++...+++..+|++.++.... ++ .|.+++..+..-.
T Consensus 243 ~ILrqRT~didiKkyci~~LEd~gSf~YTrn~l~~L~a~a~~~i~~~g~-Np---yl~~L~~hl~~~~ 306 (322)
T KOG0777|consen 243 RILRQRTSDIDIKKYCIQILEDTGSFAYTRNFLNQLVAEARSMIKNDGE-NP---YLPDLASHLDTAT 306 (322)
T ss_pred HHHHHhhccchHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHhcCC-Cc---chHHHHHHHHhhh
Confidence 25789999999999999999998765 33 4666666655443
No 14
>KOG0711 consensus Polyprenyl synthetase [Coenzyme transport and metabolism]
Probab=99.97 E-value=2.4e-31 Score=246.29 Aligned_cols=238 Identities=21% Similarity=0.209 Sum_probs=183.4
Q ss_pred cHHHHHHHHHHHHHHHHHHhh-ccCCchhHHHHHHHhhhcCCCCcchHHHHHHHHHHhCCCc-------hhhHHHHHHHH
Q 019903 41 DLKTYWTTLITEIDQNLEKAI-TVKYPEQIYESMRYSVLAKGTKRAPPVMCVAACELFGVNR-------IAAFPTACALE 112 (334)
Q Consensus 41 ~~~~~~~~~~~~i~~~L~~~~-~~~~~~~l~~~~~y~~~~~gGKrlRp~l~ll~~~~~g~~~-------~~~~~lA~avE 112 (334)
+|.+.+......|.+.+.... +.+..+++.+.+.|.+ .|||..|...++.+.+++.+.. ..+..++|+||
T Consensus 11 ~f~~~f~~~vr~i~~~~~~~~~~~da~~~~~~~L~yN~--~GGK~nRgl~vv~s~~~L~~~~~l~~~~~~~a~~lGw~vE 88 (347)
T KOG0711|consen 11 DFLQVFPVLVRVLTEDLMAHGESGDATEWLKEVLDYNV--IGGKLNRGLSVVDSFKALVEPRKLDEEELQLALILGWCVE 88 (347)
T ss_pred HHHHHHHHHHHHHHHhhhccCCChHHHHHHHHHHhccC--cccccccchhHHHHHHHhcCccCCCHHHHHHHHHHHHHHH
Confidence 344455544444444333222 2122356778888886 5999999999999999987621 34678999999
Q ss_pred HHHHHHHHHhCCCCCCCCCCCCCCCCCCCcCChH-HHHHHHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHhhh
Q 019903 113 MVHAASLIHDDLPCMDDDPSRRGQPSNHTVYGVD-IAILAGDALFPLGFQHIVSHTPPHLVPEPRVLRVIAEIARAVGST 191 (334)
Q Consensus 113 liH~asLIhDDIp~iD~s~~RRG~pt~h~~~G~~-~Avl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 191 (334)
++++..||.||| ||+|.+|||+||||.+-|++ .|||-+-+|-+.-..+|.+..+ +......+.+++.++..
T Consensus 89 lLQaffLiaDDI--MDnS~tRRGqpCWy~~~gVG~~AINDA~lLea~Iy~lLkk~fr-~~~~y~~l~elf~ev~f----- 160 (347)
T KOG0711|consen 89 LLQAFFLVADDI--MDNSKTRRGQPCWYQKPGVGLDAINDAFLLEAAIYKLLKKHFR-NIYCYVDLVELFHEVTF----- 160 (347)
T ss_pred HHHHHHHHhhhh--hccccccCCCcceeecCCcchhhhhHHHHHHHHHHHHHHHhcc-CCccHHHHHHHHHHHHH-----
Confidence 999999999999 99999999999999999996 4999886666666666654433 22334566777776643
Q ss_pred hhhhHhhhhccC--------ChhHHHHHHHhhHHHH-HHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHhHHhhHhhh
Q 019903 192 GMAAGQFLDLEG--------EPNLVEFVQEKKFGEM-SECSAVCGGFLAG-ADDDEIQSLRRYGRAVGVLYQVVDDILEA 261 (334)
Q Consensus 192 ~~~~GQ~lDl~~--------~~~~y~~i~~~KTa~L-f~~a~~lGa~lag-~~~~~~~~l~~~G~~lG~afQi~DD~lD~ 261 (334)
.++.||.++... +.+.|..|+++|||.+ |.+|..+|.+++| .+.+.......+...+|..||++||++|+
T Consensus 161 ~T~lGdllt~~~~~~~ls~fsl~~y~~Iv~~KTa~YsFYLPialAl~~ag~~~~k~~~~~k~v~~~lg~~FQvQDDYLd~ 240 (347)
T KOG0711|consen 161 QTELGDLLTTPEGNKDLSKFSLEKYVFIVEYKTAYYSFYLPVALALLLAGIANLKEHACEKKVLLLLGEYFQVQDDYLDC 240 (347)
T ss_pred HHhhhccccCcccchhHhhhhHHHHHHHhhccccceeeecHHHHHHHHhhhhhHHHhhhHHHHHHHHHHHHhcchHHHHh
Confidence 456787776443 6788999999999999 9999999999998 45666778999999999999999999999
Q ss_pred hcCCCC---CchHHhhcCchHHHHhHHHHH
Q 019903 262 KAQTPR---DEEKKKKKGKSYVAFYGVEKA 288 (334)
Q Consensus 262 ~~~~~~---~~~Dl~~~k~t~~~~~gle~a 288 (334)
+++++. .|+||+.+|+||....++++|
T Consensus 241 fgDp~vtgkiGtDIqDnKCsWlv~~al~~~ 270 (347)
T KOG0711|consen 241 FGDPEVTGKIGTDIQDNKCSWLVVKALQRA 270 (347)
T ss_pred cCChhhcCCCCCccccCceeeehHHHHhhc
Confidence 998764 568999999999987665544
No 15
>cd00385 Isoprenoid_Biosyn_C1 Isoprenoid Biosynthesis enzymes, Class 1. Superfamily of trans-isoprenyl diphosphate synthases (IPPS) and class I terpene cyclases which either synthesis geranyl/farnesyl diphosphates (GPP/FPP) or longer chained products from isoprene precursors, isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), or use geranyl (C10)-, farnesyl (C15)-, or geranylgeranyl (C20)-diphosphate as substrate. These enzymes produce a myriad of precursors for such end products as steroids, cholesterol, sesquiterpenes, heme, carotenoids, retinoids, and diterpenes; and are widely distributed among archaea, bacteria, and eukaryota.The enzymes in this superfamily share the same 'isoprenoid synthase fold' and include several subgroups. The head-to-tail (HT) IPPS catalyze the successive 1'-4 condensation of the 5-carbon IPP to the growing isoprene chain to form linear, all-trans, C10-, C15-, C20- C25-, C30-, C35-, C40-, C45-, or C50-isoprenoid diphosphates. Cyclic monoter
Probab=99.85 E-value=3.4e-19 Score=159.48 Aligned_cols=186 Identities=31% Similarity=0.483 Sum_probs=153.3
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCCc---CChHHHHHHHHHHHHHHHHHHHhcCCCCCCChHHHHHHH
Q 019903 105 FPTACALEMVHAASLIHDDLPCMDDDPSRRGQPSNHTV---YGVDIAILAGDALFPLGFQHIVSHTPPHLVPEPRVLRVI 181 (334)
Q Consensus 105 ~~lA~avEliH~asLIhDDIp~iD~s~~RRG~pt~h~~---~G~~~Avl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~l~ 181 (334)
..++.++|.+|+++++|||| +|++..|+|.+++|.. +|...+++.|+.++..+++.+.... + ......+
T Consensus 13 ~~~~~~~~~~~~~~~~~DDi--~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~-~~~~~~~ 84 (243)
T cd00385 13 SRLRAAVEKLHAASLVHDDI--VDDSGTRRGLPTAHLAVAIDGLPEAILAGDLLLADAFEELAREG-----S-PEALEIL 84 (243)
T ss_pred HHHHHHHHHHHHHHHHHhhc--ccCCCCCCCchhhhhhHHhcCchHHHHHHHHHHHHHHHHHHhCC-----C-HHHHHHH
Confidence 68899999999999999999 9999999999999998 9999999999999999999887642 1 2334444
Q ss_pred HHHHHHHhhhhhhhHhhhhccC------ChhHHHHHHHhhHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHH
Q 019903 182 AEIARAVGSTGMAAGQFLDLEG------EPNLVEFVQEKKFGEMSECSAVCGGFLAGADDDEIQSLRRYGRAVGVLYQVV 255 (334)
Q Consensus 182 ~~~~~~~~~~~~~~GQ~lDl~~------~~~~y~~i~~~KTa~Lf~~a~~lGa~lag~~~~~~~~l~~~G~~lG~afQi~ 255 (334)
.+.. .+++.||..|+.+ +.++|..+...|||.++...+..++...+.+......+..++.++|++||+.
T Consensus 85 ~~~~-----~~~~~g~~~d~~~~~~~~~t~~ey~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ql~ 159 (243)
T cd00385 85 AEAL-----LDLLEGQLLDLKWRREYVPTLEEYLEYCRYKTAGLVGALCLLGAGLSGGEAELLEALRKLGRALGLAFQLT 159 (243)
T ss_pred HHHH-----HHHHHHHHHHHHhccCCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 4433 3578899998775 5688999999999999999999998888777777889999999999999999
Q ss_pred hhHhhhhcCCCCCchHHhhcCchHHHHh------------------HHHHHHHHHHHHHHHHHHHHhhccC
Q 019903 256 DDILEAKAQTPRDEEKKKKKGKSYVAFY------------------GVEKAMEVAEELRAKAKEELDRFKK 308 (334)
Q Consensus 256 DD~lD~~~~~~~~~~Dl~~~k~t~~~~~------------------gle~a~~~a~~~~~~A~~~L~~lp~ 308 (334)
||+.|+..+.+.. +++.++|..+ +++.+.+.+..+.+++.+.+..+..
T Consensus 160 nDl~~~~~e~~~~-----~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 225 (243)
T cd00385 160 NDLLDYEGDAERG-----EGKCTLPVLYALEYGVPAEDLLLVEKSGSLEEALEELAKLAEEALKELNELIL 225 (243)
T ss_pred HHHHhccCCHHHh-----CCchHHHHHHHHHhCChhhHHHHHHHCChHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 9999998665311 2567776543 5677888888888888888887765
No 16
>PF07307 HEPPP_synt_1: Heptaprenyl diphosphate synthase (HEPPP synthase) subunit 1; InterPro: IPR009920 This family contains subunit 1 of bacterial heptaprenyl diphosphate synthase (HEPPP synthase) (2.5.1.30 from EC) (approximately 230 residues long). The enzyme consists of two subunits, both of which are required for catalysis of heptaprenyl diphosphate synthesis, the precursor for the side chain of the isoprenoid quinone menaquinone-7 (MQ-7) [, ].
Probab=97.12 E-value=0.013 Score=53.06 Aligned_cols=61 Identities=25% Similarity=0.255 Sum_probs=46.7
Q ss_pred CchhhHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCCcCChHHHHHHHHHHHHHHHHHHHhcC
Q 019903 100 NRIAAFPTACALEMVHAASLIHDDLPCMDDDPSRRGQPSNHTVYGVDIAILAGDALFPLGFQHIVSHT 167 (334)
Q Consensus 100 ~~~~~~~lA~avEliH~asLIhDDIp~iD~s~~RRG~pt~h~~~G~~~Avl~GD~L~~~a~~~l~~~~ 167 (334)
.++.....+.++-++|+|...||.| |++..+.+...-. -...||+|||.-+..+.+|++.+
T Consensus 31 ~~~~~~~~~~a~~LVq~aLDtHd~V---~~~~~~~~~~~k~----RQLtVLAGDy~S~~yY~lLA~~~ 91 (212)
T PF07307_consen 31 SEEEAERYALATMLVQIALDTHDEV---DNAGDESEESSKE----RQLTVLAGDYYSGLYYQLLAESG 91 (212)
T ss_pred CHHHHHHHHHHHHHHHHHHHhhhhh---ccccccccHHHHh----hhhhhhhHHHHHHHHHHHHHhCC
Confidence 4677888999999999999999999 5533333322111 14699999999999999999864
No 17
>cd00683 Trans_IPPS_HH Trans-Isoprenyl Diphosphate Synthases, head-to-head. These trans-Isoprenyl Diphosphate Synthases (Trans_IPPS) catalyze a head-to-head (HH) (1'-1) condensation reaction. This CD includes squalene and phytoene synthases which catalyze the 1'-1 condensation of two 15-carbon (farnesyl) and 20-carbon (geranylgeranyl) isoprenyl diphosphates, respectively. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions (DXXXD) located on opposite walls. These residues mediate binding of prenyl phosphates. A two-step reaction has been proposed for squalene synthase (farnesyl-diphosphate farnesyltransferase) in which, two molecules of FPP react to form a stable cyclopropylcarbinyl diphosphate intermediate, and then the intermediate undergoes heterolysis, isomerization, and reduction with NADPH to form squalene, a precursor of cholestrol. The carotenoid biosynthesis enzyme, phytoene synthase (CrtB), catalyzes
Probab=96.45 E-value=0.44 Score=44.37 Aligned_cols=112 Identities=14% Similarity=0.096 Sum_probs=75.4
Q ss_pred hhhhhHhhhhccC----ChhHHHHHHHhhHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHhhHhhhhcCCC
Q 019903 191 TGMAAGQFLDLEG----EPNLVEFVQEKKFGEMSECSAVCGGFLAGADDDEIQSLRRYGRAVGVLYQVVDDILEAKAQTP 266 (334)
Q Consensus 191 ~~~~~GQ~lDl~~----~~~~y~~i~~~KTa~Lf~~a~~lGa~lag~~~~~~~~l~~~G~~lG~afQi~DD~lD~~~~~~ 266 (334)
.+++.|...|+.. +.++++..++.-.|++..+++.+ ++.... +....++.++|.|+|+.|=+.|+..+..
T Consensus 96 ~~li~g~~~Dl~~~~~~t~~eL~~Y~~~vAg~vg~l~~~i---~~~~~~---~~~~~~A~~lG~AlqltnilRdv~eD~~ 169 (265)
T cd00683 96 RDLLAGMAMDLDKRRYETLDELDEYCYYVAGVVGLMLLRV---FGASSD---EAALERARALGLALQLTNILRDVGEDAR 169 (265)
T ss_pred HHHHHHHHHhCCCCCCCCHHHHHHHHHHhHHHHHHHHHHH---hCCCCC---hHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4577888888875 66777777777777776655543 232111 3456899999999999998888754332
Q ss_pred C---------------CchHHhhcCchHHHHhHHHHHHHHHHHHHHHHHHHHhhccC
Q 019903 267 R---------------DEEKKKKKGKSYVAFYGVEKAMEVAEELRAKAKEELDRFKK 308 (334)
Q Consensus 267 ~---------------~~~Dl~~~k~t~~~~~gle~a~~~a~~~~~~A~~~L~~lp~ 308 (334)
. ..+|+..+..+-...-.+++--..++.+...|+..+..+|.
T Consensus 170 ~gR~YlP~d~l~~~gv~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~lp~ 226 (265)
T cd00683 170 RGRIYLPREELARFGVTLEDLLAPENSPAFRALLRRLIARARAHYREALAGLAALPR 226 (265)
T ss_pred cCCCcCCHHHHHHcCCCHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHhCCH
Confidence 1 11344444333333334666677889999999999999985
No 18
>TIGR03465 HpnD squalene synthase HpnD. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. In the organisms Zymomonas mobilis and Bradyrhizobium japonicum these genes have been characterized as squalene synthases (farnesyl-pyrophosphate ligases). Often, these genes appear in tandem with the HpnC gene which appears to have resulted from an ancient gene duplication event. Presumably these proteins form a heteromeric complex, but this has not yet been experimentally demonstrated.
Probab=96.09 E-value=0.85 Score=42.60 Aligned_cols=111 Identities=16% Similarity=0.120 Sum_probs=73.4
Q ss_pred hhhhhHhhhhccC----ChhHHHHHHHhhHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHhhHhhhhcCCC
Q 019903 191 TGMAAGQFLDLEG----EPNLVEFVQEKKFGEMSECSAVCGGFLAGADDDEIQSLRRYGRAVGVLYQVVDDILEAKAQTP 266 (334)
Q Consensus 191 ~~~~~GQ~lDl~~----~~~~y~~i~~~KTa~Lf~~a~~lGa~lag~~~~~~~~l~~~G~~lG~afQi~DD~lD~~~~~~ 266 (334)
..++.|+..|+.. |.++++..++.-.|++..+.+.+ ++..+ +.....+.++|.|+|+.|=+.|+..+..
T Consensus 88 ~~li~g~~~Dl~~~~~~t~~dL~~Y~~~vAg~vg~l~~~l---lg~~~----~~~~~~a~~lG~AlqltnilRdv~eD~~ 160 (266)
T TIGR03465 88 LEVIDGMEMDLEQTRYPDFAELDLYCDRVAGAVGRLSARI---FGATD----ARTLEYAHHLGRALQLTNILRDVGEDAR 160 (266)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHhHHHHHHHHHHH---hCCCC----hhHHHHHHHHHHHHHHHHHHHHhHHHHh
Confidence 3567888888875 67788888887777777766554 33322 2357889999999999998888743221
Q ss_pred C-----C----------chHHhhcCchHHHHhHHHHHHHHHHHHHHHHHHHHhhccC
Q 019903 267 R-----D----------EEKKKKKGKSYVAFYGVEKAMEVAEELRAKAKEELDRFKK 308 (334)
Q Consensus 267 ~-----~----------~~Dl~~~k~t~~~~~gle~a~~~a~~~~~~A~~~L~~lp~ 308 (334)
. + .+|+..+..+--..-.++.--..++.|.++|.+.+..+|.
T Consensus 161 ~gR~ylP~~~l~~~gv~~~~l~~~~~~~~~~~~~~~l~~~A~~~l~~a~~~~~~~p~ 217 (266)
T TIGR03465 161 RGRIYLPAEELQRFGVPAADILEGRYSPALAALCRFQAERARAHYAEADALLPACDR 217 (266)
T ss_pred CCCeecCHHHHHHcCCCHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhCCH
Confidence 1 1 1333333333222234555567788899999999998885
No 19
>PLN02632 phytoene synthase
Probab=96.07 E-value=0.079 Score=51.44 Aligned_cols=114 Identities=15% Similarity=0.063 Sum_probs=74.0
Q ss_pred hhhhHhhhhccC----ChhHHHHHHHhhHHHHHHHHHHHHHHhcCCC--HHHHHHHHHHHHHHHHHHhHHhhHhhhhcCC
Q 019903 192 GMAAGQFLDLEG----EPNLVEFVQEKKFGEMSECSAVCGGFLAGAD--DDEIQSLRRYGRAVGVLYQVVDDILEAKAQT 265 (334)
Q Consensus 192 ~~~~GQ~lDl~~----~~~~y~~i~~~KTa~Lf~~a~~lGa~lag~~--~~~~~~l~~~G~~lG~afQi~DD~lD~~~~~ 265 (334)
+++.|...|+.. |.++++..++.-.|++..+++.+ ++..+ ....+.+...+.++|+|+|+.|=+.|+..+.
T Consensus 144 ~li~g~~~Dl~~~~~~t~~eL~~Ycy~vAgtVG~l~l~v---lg~~~~~~~~~~~~~~~A~~lG~AlQltNILRDv~eD~ 220 (334)
T PLN02632 144 DMIEGMRMDLVKSRYENFDELYLYCYYVAGTVGLMSVPV---MGIAPESKASTESVYNAALALGIANQLTNILRDVGEDA 220 (334)
T ss_pred HHHHHHHHHhccCCCCCHHHHHHHHHHhhHHHHHHHHHH---hCCCCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467788888765 67788877777777776666554 22222 2223456788999999999999888875332
Q ss_pred CC---------------CchHHhhcCchHHHHhHHHHHHHHHHHHHHHHHHHHhhccC
Q 019903 266 PR---------------DEEKKKKKGKSYVAFYGVEKAMEVAEELRAKAKEELDRFKK 308 (334)
Q Consensus 266 ~~---------------~~~Dl~~~k~t~~~~~gle~a~~~a~~~~~~A~~~L~~lp~ 308 (334)
.. ..+|+..+..+-.....++.--..++.|.++|...+..+|.
T Consensus 221 ~~GRvYLP~e~L~~~Gv~~edl~~~~~~~~~~~l~~~~~~~Ar~~~~~a~~~l~~lp~ 278 (334)
T PLN02632 221 RRGRVYLPQDELAQFGLTDEDIFAGKVTDKWRAFMKFQIKRARMYFAEAEEGVSELDP 278 (334)
T ss_pred hCCceeCCHHHHHHcCCCHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHhHhhCCH
Confidence 11 11333333332222223444447899999999999999986
No 20
>TIGR03464 HpnC squalene synthase HpnC. This family of genes are members of a superfamily (pfam00494) of phytoene and squalene synthases which catalyze the head-t0-head condensation of polyisoprene pyrophosphates. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. In the organisms Zymomonas mobilis and Bradyrhizobium japonicum these genes have been characterized as squalene synthases (farnesyl-pyrophosphate ligases). Often, these genes appear in tandem with the HpnD gene which appears to have resulted from an ancient gene duplication event. Presumably these proteins form a heteromeric complex, but this has not yet been experimentally demonstrated.
Probab=95.36 E-value=0.41 Score=44.76 Aligned_cols=110 Identities=7% Similarity=-0.083 Sum_probs=72.8
Q ss_pred hhhhHhhhhccC----ChhHHHHHHHhhHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHhhHhhhhcCCCC
Q 019903 192 GMAAGQFLDLEG----EPNLVEFVQEKKFGEMSECSAVCGGFLAGADDDEIQSLRRYGRAVGVLYQVVDDILEAKAQTPR 267 (334)
Q Consensus 192 ~~~~GQ~lDl~~----~~~~y~~i~~~KTa~Lf~~a~~lGa~lag~~~~~~~~l~~~G~~lG~afQi~DD~lD~~~~~~~ 267 (334)
.++.|...|+.. |.++++..+++-.|++..+++.+ ++..+++ ...++.++|.|+|+.|=+.|+..+-..
T Consensus 90 ~li~~~~~Dl~~~~~~t~~eL~~Y~~~vAg~vg~l~~~i---~g~~~~~----~~~~A~~lG~AlQltniLRDl~eD~~~ 162 (266)
T TIGR03464 90 DLLDAFRQDVVVTRYATWAELLDYCRYSANPVGRLVLDL---YGASDPE----NVALSDAICTALQLINFWQDVGVDYRK 162 (266)
T ss_pred HHHHHHHHhccCCCCCCHHHHHHHHHHhHHHHHHHHHHH---cCCCChh----HHHHHHHHHHHHHHHHHHHhhHHHHhc
Confidence 456777788765 67788888787777777666543 3333322 346899999999999988887533211
Q ss_pred ---------------CchHHhhcCchHHHHhHHHHHHHHHHHHHHHHHHHHhhccC
Q 019903 268 ---------------DEEKKKKKGKSYVAFYGVEKAMEVAEELRAKAKEELDRFKK 308 (334)
Q Consensus 268 ---------------~~~Dl~~~k~t~~~~~gle~a~~~a~~~~~~A~~~L~~lp~ 308 (334)
..+|+.++..+--..-.++.--..++.+.++|...+..+|.
T Consensus 163 gR~YLP~~~l~~~Gv~~edl~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~lp~ 218 (266)
T TIGR03464 163 GRVYLPRDDLARFGVSEEDLAAGRATPALRELMAFEVSRTRALLDRGAPLAARVDG 218 (266)
T ss_pred CCccCCHHHHHHcCCCHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHhCCH
Confidence 11344444333323334566667889999999999999986
No 21
>PF00494 SQS_PSY: Squalene/phytoene synthase; InterPro: IPR002060 Squalene synthase 2.5.1.21 from EC (farnesyl-diphosphate farnesyltransferase) (SQS) and Phytoene synthase 2.5.1.32 from EC (PSY) share a number of functional similarities. These similarities are also reflected at the level of their primary structure [, , ]. In particular three well conserved regions are shared by SQS and PSY; they could be involved in substrate binding and/or the catalytic mechanism. SQS catalyzes the conversion of two molecules of farnesyl diphosphate (FPP) into squalene. It is the first committed step in the cholesterol biosynthetic pathway. The reaction carried out by SQS is catalyzed in two separate steps: the first is a head-to-head condensation of the two molecules of FPP to form presqualene diphosphate; this intermediate is then rearranged in a NADP-dependent reduction, to form squalene: 2 FPP -> presqualene diphosphate + NADP -> squalene SQS is found in eukaryotes. In yeast it is encoded by the ERG9 gene, in mammals by the FDFT1 gene. SQS seems to be membrane-bound. PSY catalyzes the conversion of two molecules of geranylgeranyl diphosphate (GGPP) into phytoene. It is the second step in the biosynthesis of carotenoids from isopentenyl diphosphate. The reaction carried out by PSY is catalyzed in two separate steps: the first is a head-to-head condensation of the two molecules of GGPP to form prephytoene diphosphate; this intermediate is then rearranged to form phytoene. 2 GGPP -> prephytoene diphosphate -> phytoene PSY is found in all organisms that synthesize carotenoids: plants and photosynthetic bacteria as well as some non- photosynthetic bacteria and fungi. In bacteria PSY is encoded by the gene crtB. In plants PSY is localized in the chloroplast.; GO: 0016740 transferase activity, 0009058 biosynthetic process; PDB: 3NRI_A 3NPR_A 2ZCR_A 2ZCP_B 4F6V_A 4EA0_A 3ACW_A 4F6X_A 3VJE_B 3ACX_A ....
Probab=94.25 E-value=0.53 Score=43.66 Aligned_cols=112 Identities=17% Similarity=0.045 Sum_probs=73.7
Q ss_pred hhhhHhhhhccC----ChhHHHHHHHhhHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHhhHhhhhcC-CC
Q 019903 192 GMAAGQFLDLEG----EPNLVEFVQEKKFGEMSECSAVCGGFLAGADDDEIQSLRRYGRAVGVLYQVVDDILEAKAQ-TP 266 (334)
Q Consensus 192 ~~~~GQ~lDl~~----~~~~y~~i~~~KTa~Lf~~a~~lGa~lag~~~~~~~~l~~~G~~lG~afQi~DD~lD~~~~-~~ 266 (334)
+++.|...|+.. |.+++...++.-+|++..+.+.+...- .+. .....++.++|.|+|+.|=+.|+-.+ ..
T Consensus 95 ~li~~~~~dl~~~~~~t~~~L~~Y~~~vag~vg~l~~~~~~~~--~~~---~~~~~~a~~lG~alql~nilRd~~~D~~~ 169 (267)
T PF00494_consen 95 ELIDGMEMDLEFTPYETFADLERYCYYVAGSVGLLLLQLLGAH--DPD---EAARDAARALGRALQLTNILRDIPEDALR 169 (267)
T ss_dssp HHHHHHHHCTT-S--SSHHHHHHHHHHHTHHHHHHHHHHHHSS--TSH---HHHHHHHHHHHHHHHHHHHHHTHHHH-HH
T ss_pred HHHHHhcccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHhccc--cch---hhHHHHHHHHHHHHHHHHHHHHhHHHHHh
Confidence 467788888874 778888888888888877665543221 222 46788999999999999988887544 11
Q ss_pred C---------------CchHHhhcC-chHHHHhHHHHHHHHHHHHHHHHHHHHhhccC
Q 019903 267 R---------------DEEKKKKKG-KSYVAFYGVEKAMEVAEELRAKAKEELDRFKK 308 (334)
Q Consensus 267 ~---------------~~~Dl~~~k-~t~~~~~gle~a~~~a~~~~~~A~~~L~~lp~ 308 (334)
. ..+|+.++. .+-.....+..--..++.+.++|++.+..+|+
T Consensus 170 ~gR~ylP~d~l~~~gv~~~dl~~~~~~~~~~~~~~~~~~~~A~~~l~~a~~~~~~l~~ 227 (267)
T PF00494_consen 170 RGRIYLPLDDLRRFGVTPEDLLAGRPRSERLRALIRELAARARAHLDEARAGLSALPP 227 (267)
T ss_dssp TT---S-HHHHHHTTSSHHHHHHHG-GGHHHHHHHHHHHHHHHHHHHHHHHGGGGS--
T ss_pred cccccCCchhHHHcCCCHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 0 113333332 22222233556667888999999999999954
No 22
>TIGR01559 squal_synth farnesyl-diphosphate farnesyltransferase. This model describes farnesyl-diphosphate farnesyltransferase, also known as squalene synthase, as found in eukaryotes. This family is related to phytoene synthases. Tentatively identified archaeal homologs (excluded from this model) lack the C-terminal predicted transmembrane region universally conserved among members of this family.
Probab=92.80 E-value=4.3 Score=39.55 Aligned_cols=126 Identities=16% Similarity=0.076 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHHhhhhhhhHhhhhccC------ChhHHHHHHHhhHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Q 019903 177 VLRVIAEIARAVGSTGMAAGQFLDLEG------EPNLVEFVQEKKFGEMSECSAVCGGFLAGADDDEIQSLRRYGRAVGV 250 (334)
Q Consensus 177 ~~~l~~~~~~~~~~~~~~~GQ~lDl~~------~~~~y~~i~~~KTa~Lf~~a~~lGa~lag~~~~~~~~l~~~G~~lG~ 250 (334)
...++..+.+ .|..|...|+.. |.++|...+.+=.|..=.+.+.+-+. +|...+.......++..+|+
T Consensus 102 ~~~~I~~~~~-----~M~~GMa~dl~~~~~~~~T~~dL~~YCy~VAG~VG~mlt~l~~~-~~~~~~~~~~~~~~A~~lG~ 175 (336)
T TIGR01559 102 YQEVIADITR-----RMGNGMADFIDKEVTNEQTVGDYDKYCHYVAGLVGIGLSRLFVA-SGFEDPSLGESEALSNSMGL 175 (336)
T ss_pred HHHHHHHHHH-----HHHHHHHHHHhcCcCCCCCHHHHHHHHhccccHHHHHHHHHHhh-cCCCCcchhhhHHHHHHHHH
Confidence 3445545443 356677666543 45566655555445443333333222 22221111234688999999
Q ss_pred HHhHHhhHhhhhcCCCC-----Cc----------hHHhhcCchHHHHhHHHHHHHHHHHHHHHHHHHHhhccC
Q 019903 251 LYQVVDDILEAKAQTPR-----DE----------EKKKKKGKSYVAFYGVEKAMEVAEELRAKAKEELDRFKK 308 (334)
Q Consensus 251 afQi~DD~lD~~~~~~~-----~~----------~Dl~~~k~t~~~~~gle~a~~~a~~~~~~A~~~L~~lp~ 308 (334)
|+|+.|=+.|+..+.+. +. +|+..+..+--....++.--..|..|.+.|...+..+++
T Consensus 176 aLQlTNIlRDv~ED~~~GR~YlP~e~l~~~g~~~~dl~~~~~~~~~~~~l~~lv~~A~~~~~~al~yl~~l~~ 248 (336)
T TIGR01559 176 FLQKTNIIRDYLEDINEGRMFWPREIWSKYAKKLGDFKKPENSDKALQCLNELVTNALHHATDCLTYLSRLRD 248 (336)
T ss_pred HHHHHHHHHHHHhHHhCCCCCCCHHHHHHcCCCHHHhcCccccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 99999999988654321 11 233333333333345666667888899999999999976
No 23
>COG1562 ERG9 Phytoene/squalene synthetase [Lipid metabolism]
Probab=81.01 E-value=52 Score=31.32 Aligned_cols=104 Identities=16% Similarity=0.144 Sum_probs=64.9
Q ss_pred hhhhHhhhhccC----ChhHHHHHHHhhHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHhhHhhhhcCCCC
Q 019903 192 GMAAGQFLDLEG----EPNLVEFVQEKKFGEMSECSAVCGGFLAGADDDEIQSLRRYGRAVGVLYQVVDDILEAKAQTPR 267 (334)
Q Consensus 192 ~~~~GQ~lDl~~----~~~~y~~i~~~KTa~Lf~~a~~lGa~lag~~~~~~~~l~~~G~~lG~afQi~DD~lD~~~~~~~ 267 (334)
+++.|+..|+.. ++++++..+..-.|....++ ..+++- +. ..........+|.|+|+.|=+.|+-
T Consensus 107 ~~~da~~~Dl~~~~y~~~~eL~~Yc~~vAg~vG~l~---~~Il~~-~~--~~~~~~~a~~lG~A~QlvNilRdv~----- 175 (288)
T COG1562 107 ALIDAMRMDLDRTRYLDFEELEEYCYGVAGAVGLLL---ARILGP-DK--DAATRAYARGLGLALQLVNILRDVG----- 175 (288)
T ss_pred HHHHHHHHHhhhccccCHHHHHHHHHHhHHHHHHHH---HHHhCc-cc--chhhHHHHHHHHHHHHHHHHHHHhH-----
Confidence 466788888765 55666666665555554332 233332 22 2344555666999999999888873
Q ss_pred CchHHhhcCchHH----------------------HHhHHHHHHHHHHHHHHHHHHHHhhccC
Q 019903 268 DEEKKKKKGKSYV----------------------AFYGVEKAMEVAEELRAKAKEELDRFKK 308 (334)
Q Consensus 268 ~~~Dl~~~k~t~~----------------------~~~gle~a~~~a~~~~~~A~~~L~~lp~ 308 (334)
+|..+|..=+| ..-.+++--..++++...|...+..+|.
T Consensus 176 --eD~~~GrvylP~e~l~~~g~~~~d~~~~~~~~~~~~~~~~~~~~ar~~~~~a~~~~~~lp~ 236 (288)
T COG1562 176 --EDRRRGRVYLPAEELARFGVSEADLLAGRVDDAFRELMRFEADRARDHLAEARRGLPALPG 236 (288)
T ss_pred --HHHhCCcccCCHHHHHHhCCCHHHHHcccchhHHHHHHHHHHHHHHHHHHHHHHhhhhCCc
Confidence 34443333322 1223555557888999999999999996
No 24
>TIGR02748 GerC3_HepT heptaprenyl diphosphate synthase component II. Members of this family are component II of the heterodimeric heptaprenyl diphosphate synthase. The trusted cutoff was set such that all members identified are encoded near to a recognizable gene for component I (in Pfam family pfam07307). This enzyme acts in menaquinone-7 isoprenoid side chain biosynthesis.
Probab=76.97 E-value=16 Score=35.13 Aligned_cols=71 Identities=20% Similarity=0.235 Sum_probs=51.3
Q ss_pred hcCCCHHHHHHHHHHHHHHHHHHhHHhhHhhhhcCCCCCchHHhhcCchHHHHhHHHHHHHHHHHHHHHHHHHHhhccC
Q 019903 230 LAGADDDEIQSLRRYGRAVGVLYQVVDDILEAKAQTPRDEEKKKKKGKSYVAFYGVEKAMEVAEELRAKAKEELDRFKK 308 (334)
Q Consensus 230 lag~~~~~~~~l~~~G~~lG~afQi~DD~lD~~~~~~~~~~Dl~~~k~t~~~~~gle~a~~~a~~~~~~A~~~L~~lp~ 308 (334)
+.|.+.+....+...-+.+=.|.-|.||+.| ++++++|++|.-..+|...|--..+-+..+|.+.|..++.
T Consensus 57 ~~~~~~~~~~~~A~aiEliH~asLiHDDI~D--------~s~~RRg~pt~~~~~G~~~Ail~GD~L~~~a~~~l~~~~~ 127 (319)
T TIGR02748 57 FGDYDLDAIKHVAVALELIHMASLVHDDVID--------DADLRRGRPTIKSKWGNRIAMYTGDYLFAKSLETMTEIKD 127 (319)
T ss_pred HcCCCHHHHHHHHHHHHHHHHHHHHhccccC--------CCCCCCCCcCHHHHhChHHHHHHHHHHHHHHHHHHHhCCc
Confidence 3455555444566666778888899999977 3567788888888888777777777777788877776543
No 25
>PF00348 polyprenyl_synt: Polyprenyl synthetase; InterPro: IPR000092 A variety of isoprenoid compounds are synthesized by various organisms. For example in eukaryotes the isoprenoid biosynthetic pathway is responsible for the synthesis of a variety of end products including cholesterol, dolichol, ubiquinone or coenzyme Q. In bacteria this pathway leads to the synthesis of isopentenyl tRNA, isoprenoid quinones, and sugar carrier lipids. Among the enzymes that participate in that pathway, are a number of polyprenyl synthetase enzymes which catalyze a 1'4-condensation between 5 carbon isoprene units. It has been shown [, , , , ] that all the above enzymes share some regions of sequence similarity. Two of these regions are rich in aspartic-acid residues and could be involved in the catalytic mechanism and/or the binding of the substrates.; GO: 0008299 isoprenoid biosynthetic process; PDB: 3AQC_B 3AQB_D 3Q1O_C 3LLW_B 3EFQ_A 3EGT_A 3DYG_A 2P1C_A 2OGD_A 2EWG_B ....
Probab=75.43 E-value=16 Score=33.91 Aligned_cols=72 Identities=19% Similarity=0.181 Sum_probs=57.4
Q ss_pred HHhcCCCHHHHHHHHHHHHHHHHHHhHHhhHhhhhcCCCCCchHHhhcCchHHHHhHHHHHHHHHHHHHHHHHHHHhhcc
Q 019903 228 GFLAGADDDEIQSLRRYGRAVGVLYQVVDDILEAKAQTPRDEEKKKKKGKSYVAFYGVEKAMEVAEELRAKAKEELDRFK 307 (334)
Q Consensus 228 a~lag~~~~~~~~l~~~G~~lG~afQi~DD~lD~~~~~~~~~~Dl~~~k~t~~~~~gle~a~~~a~~~~~~A~~~L~~lp 307 (334)
+.+.|.+.+....+...-+.+=.++-|.||+.| ++++++|++|.-..+|...|--..+-....|.+.+..++
T Consensus 25 ~~~~~~~~~~~~~~a~avEliH~asLIhDDI~D--------~s~~RRG~pt~~~~~G~~~Ail~gd~ll~~a~~~l~~~~ 96 (260)
T PF00348_consen 25 AEALGGDPEKAIPLAAAVELIHAASLIHDDIID--------NSDLRRGKPTVHKKFGNAIAILAGDYLLALAFELLARLG 96 (260)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHT--------TCSEETTEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhhc--------ccccCCCCccccccccccchhhhchHHHHHHHHHHHHhh
Confidence 334445666667788888888899999999977 356788999888888888888888888888888888776
No 26
>PRK10888 octaprenyl diphosphate synthase; Provisional
Probab=73.87 E-value=16 Score=35.25 Aligned_cols=70 Identities=11% Similarity=0.166 Sum_probs=48.3
Q ss_pred hcCCCHHHHHHHHHHHHHHHHHHhHHhhHhhhhcCCCCCchHHhhcCchHHHHhHHHHHHHHHHHHHHHHHHHHhhcc
Q 019903 230 LAGADDDEIQSLRRYGRAVGVLYQVVDDILEAKAQTPRDEEKKKKKGKSYVAFYGVEKAMEVAEELRAKAKEELDRFK 307 (334)
Q Consensus 230 lag~~~~~~~~l~~~G~~lG~afQi~DD~lD~~~~~~~~~~Dl~~~k~t~~~~~gle~a~~~a~~~~~~A~~~L~~lp 307 (334)
+.|.+.+....+...-+.+=.+..|.||+.| +.++++|++|+-..+|...|--..+-+...|.+.+..++
T Consensus 58 ~~g~~~~~~~~~A~avEllH~asLiHDDI~D--------~s~~RRG~pt~~~~~G~~~Ail~GD~L~~~a~~~l~~~~ 127 (323)
T PRK10888 58 AVGYQGNAHVTIAALIEFIHTATLLHDDVVD--------ESDMRRGKATANAAFGNAASVLVGDFIYTRAFQMMTSLG 127 (323)
T ss_pred HcCCChHHHHHHHHHHHHHHHHHHHHccccc--------CCcccCCCCCHHHHhCccHHHHHHHHHHHHHHHHHHhCC
Confidence 3444444444566667778888999999976 357788888887777766666666666667776666543
No 27
>cd00685 Trans_IPPS_HT Trans-Isoprenyl Diphosphate Synthases, head-to-tail. These trans-Isoprenyl Diphosphate Synthases (Trans_IPPS) catalyze head-to-tail (HT) (1'-4) condensation reactions. This CD includes all-trans (E)-isoprenyl diphosphate synthases which synthesize various chain length (C10, C15, C20, C25, C30, C35, C40, C45, and C50) linear isoprenyl diphosphates from precursors, isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). They catalyze the successive 1'-4 condensation of the 5-carbon IPP to allylic substrates geranyl-, farnesyl-, or geranylgeranyl-diphosphate. Isoprenoid chain elongation reactions proceed via electrophilic alkylations in which a new carbon-carbon single bond is generated through interaction between a highly reactive electron-deficient allylic carbocation and an electron-rich carbon-carbon double bond. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions (DDXX(XX
Probab=73.50 E-value=25 Score=32.49 Aligned_cols=65 Identities=18% Similarity=0.206 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHHHHHhHHhhHhhhhcCCCCCchHHhhcCchHHHHhHHHHHHHHHHHHHHHHHHHHhhccC
Q 019903 236 DEIQSLRRYGRAVGVLYQVVDDILEAKAQTPRDEEKKKKKGKSYVAFYGVEKAMEVAEELRAKAKEELDRFKK 308 (334)
Q Consensus 236 ~~~~~l~~~G~~lG~afQi~DD~lD~~~~~~~~~~Dl~~~k~t~~~~~gle~a~~~a~~~~~~A~~~L~~lp~ 308 (334)
+....+...-+-+=.++-|.||+.| +++.++|++|+-..+|...|-...+-+...|.+.|..++.
T Consensus 39 ~~~~~la~aiEllh~asLIhDDI~D--------~s~~RRG~p~~~~~~G~~~Ail~gd~l~~~a~~~l~~~~~ 103 (259)
T cd00685 39 EAALRLAAAIELLHTASLVHDDVMD--------NSDLRRGKPTVHKVFGNATAILAGDYLLARAFELLARLGN 103 (259)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhcc--------CCcccCCCCcHHHHhCcccHHHHHHHHHHHHHHHHHhCCC
Confidence 4455667777788889999999966 3456788888888787777777777777788888776543
No 28
>cd00687 Terpene_cyclase_nonplant_C1 Non-plant Terpene Cyclases, Class 1. This CD includes terpenoid cyclases such as pentalenene synthase and aristolochene synthase which, using an all-trans pathway, catalyze the ionization of farnesyl diphosphate, followed by the formation of a macrocyclic intermediate by bond formation between C1 with either C10 (aristolochene synthase) or C11 (pentalenene synthase), resulting in production of tricyclic hydrocarbon pentalenene or bicyclic hydrocarbon aristolochene. As with other enzymes with the 'terpenoid synthase fold', they have two conserved metal binding motifs, proposed to coordinate Mg2+ ion-bridged binding of the diphosphate moiety of FPP to the enzymes. Metal-triggered substrate ionization initiates catalysis, and the alpha-barrel active site serves as a template to channel and stabilize the conformations of reactive carbocation intermediates through a complex cyclization cascade. These enzymes function in the monomeric form and are found in
Probab=72.82 E-value=83 Score=29.40 Aligned_cols=58 Identities=12% Similarity=0.068 Sum_probs=34.7
Q ss_pred ChhHHHHHHHhhH-HHHHHHHHHHHHHhcC--CCHHHHH--HHHHHHHHHHHHHhHHhhHhhhhcC
Q 019903 204 EPNLVEFVQEKKF-GEMSECSAVCGGFLAG--ADDDEIQ--SLRRYGRAVGVLYQVVDDILEAKAQ 264 (334)
Q Consensus 204 ~~~~y~~i~~~KT-a~Lf~~a~~lGa~lag--~~~~~~~--~l~~~G~~lG~afQi~DD~lD~~~~ 264 (334)
+.++|..+ +..| |..+.+. ++-...| .+++..+ .++.+-...+...-+.||+..|..+
T Consensus 159 sl~eYl~~-R~~~~g~~~~~~--l~~~~~g~~lp~~~~~~~~~~~l~~~~~~~~~l~NDl~S~~KE 221 (303)
T cd00687 159 DVAEYLEM-RRFNIGADPCLG--LSEFIGGPEVPAAVRLDPVMRALEALASDAIALVNDIYSYEKE 221 (303)
T ss_pred CHHHHHHH-hhhcccccccHH--HHHHhcCCCCCHHHHhChHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 66788766 4445 4333222 1212222 3444433 3778888889999999999988643
No 29
>PF06783 UPF0239: Uncharacterised protein family (UPF0239); InterPro: IPR009621 This is a group of transmembrane proteins of unknown function.; GO: 0016021 integral to membrane
Probab=70.87 E-value=5.6 Score=30.74 Aligned_cols=22 Identities=32% Similarity=0.714 Sum_probs=19.1
Q ss_pred CHHHHHHHHHHHHHHHHHHhHH
Q 019903 234 DDDEIQSLRRYGRAVGVLYQVV 255 (334)
Q Consensus 234 ~~~~~~~l~~~G~~lG~afQi~ 255 (334)
.+...+.+-+||..+|-+||++
T Consensus 14 Eet~~e~llRYGLf~GAIFQli 35 (85)
T PF06783_consen 14 EETFFENLLRYGLFVGAIFQLI 35 (85)
T ss_pred cchHHHHHHHHHHHHHHHHHHH
Confidence 3456788999999999999998
No 30
>PRK12882 ubiA prenyltransferase; Reviewed
Probab=64.09 E-value=1.3e+02 Score=28.12 Aligned_cols=57 Identities=18% Similarity=0.063 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCCCC-CCCCCCCCCCCcCChHHHHHHHHHHHHHHHHH
Q 019903 106 PTACALEMVHAASLIHDDLPCMDDD-PSRRGQPSNHTVYGVDIAILAGDALFPLGFQH 162 (334)
Q Consensus 106 ~lA~avEliH~asLIhDDIp~iD~s-~~RRG~pt~h~~~G~~~Avl~GD~L~~~a~~~ 162 (334)
-+..+.=++|.++-+..|+-|.|-| ..|+.+|-.-.....+.|...+-.+...++-.
T Consensus 42 l~~l~~~l~~~~~~~~Nd~~D~~iD~~~~~~Rpl~~G~is~~~a~~~~~~l~~~g~~~ 99 (276)
T PRK12882 42 LAFAAVFLATGAGNAINDYFDREIDRINRPDRPIPSGAVSPRGALAFSILLFAAGVAL 99 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhccccccCCCCCcCCCCcCHHHHHHHHHHHHHHHHHH
Confidence 3444567889999999999333333 23577888888888899988887777666543
No 31
>PRK10581 geranyltranstransferase; Provisional
Probab=63.37 E-value=61 Score=30.91 Aligned_cols=70 Identities=11% Similarity=0.194 Sum_probs=50.6
Q ss_pred hcCCCHHHHHHHHHHHHHHHHHHhHHhhH--hhhhcCCCCCchHHhhcCchHHHHhHHHHHHHHHHHHHHHHHHHHhhcc
Q 019903 230 LAGADDDEIQSLRRYGRAVGVLYQVVDDI--LEAKAQTPRDEEKKKKKGKSYVAFYGVEKAMEVAEELRAKAKEELDRFK 307 (334)
Q Consensus 230 lag~~~~~~~~l~~~G~~lG~afQi~DD~--lD~~~~~~~~~~Dl~~~k~t~~~~~gle~a~~~a~~~~~~A~~~L~~lp 307 (334)
+.|.+.+....+...-+.+=.+.-|.||+ .| ++++++|++|.-..+|...|--..+-+...|.+.+...+
T Consensus 58 ~~g~~~~~~~~~A~avEliH~aSLiHDDip~~D--------~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~ 129 (299)
T PRK10581 58 MFGVSTNTLDAPAAAVECIHAYSLIHDDLPAMD--------DDDLRRGLPTCHVKFGEANAILAGDALQTLAFSILSDAP 129 (299)
T ss_pred HhCCCHHHHHHHHHHHHHHHHHHHHHcCccccc--------CCCccCCCcChHHHhCcchHHHHHHHHHHHHHHHHHhCC
Confidence 33445554455666667777888999999 66 467889999988888877776677777777777776543
No 32
>TIGR02749 prenyl_cyano solanesyl diphosphate synthase. Members of this family all are from cyanobacteria or plastid-containing eukaryotes. A member from Arabidopsis (where both plastoquinone and ubiquinone contain the C(45) prenyl moiety) was characterized by heterologous expression as a solanesyl diphosphate synthase.
Probab=60.30 E-value=48 Score=31.91 Aligned_cols=61 Identities=18% Similarity=0.246 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHHhHHhhHhhhhcCCCCCchHHhhcCchHHHHhHHHHHHHHHHHHHHHHHHHHhhcc
Q 019903 239 QSLRRYGRAVGVLYQVVDDILEAKAQTPRDEEKKKKKGKSYVAFYGVEKAMEVAEELRAKAKEELDRFK 307 (334)
Q Consensus 239 ~~l~~~G~~lG~afQi~DD~lD~~~~~~~~~~Dl~~~k~t~~~~~gle~a~~~a~~~~~~A~~~L~~lp 307 (334)
..+...-+.+=.+.-|.||++| ++++++|++|+-..+|...|--..+-+..+|.+.+..++
T Consensus 70 ~~~A~avEliH~asLiHDDiiD--------~s~~RRG~pt~h~~~G~~~Ail~GD~l~~~a~~~l~~~~ 130 (322)
T TIGR02749 70 RRLAEITEMIHTASLVHDDVID--------ESDTRRGIETVHSLFGTRVAVLAGDFLFAQASWYLANLE 130 (322)
T ss_pred HHHHHHHHHHHHHHHHHccccc--------CccccCCCccHHHHhCcHHHHHHHHHHHHHHHHHHHhcC
Confidence 3455566777788899999977 367788999988888877777777777777777776654
No 33
>CHL00151 preA prenyl transferase; Reviewed
Probab=51.21 E-value=67 Score=30.90 Aligned_cols=59 Identities=17% Similarity=0.177 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHhHHhhHhhhhcCCCCCchHHhhcCchHHHHhHHHHHHHHHHHHHHHHHHHHhhc
Q 019903 240 SLRRYGRAVGVLYQVVDDILEAKAQTPRDEEKKKKKGKSYVAFYGVEKAMEVAEELRAKAKEELDRF 306 (334)
Q Consensus 240 ~l~~~G~~lG~afQi~DD~lD~~~~~~~~~~Dl~~~k~t~~~~~gle~a~~~a~~~~~~A~~~L~~l 306 (334)
.+...-+.+=.+.-|.||+.| +++.++|++|+-..+|...|--..+-+..+|...+..+
T Consensus 72 ~~A~aiEllH~asLiHDDi~D--------~s~~RRG~pt~h~~~G~~~Ail~GD~l~~~a~~~l~~~ 130 (323)
T CHL00151 72 RLAEITEIIHTASLVHDDVID--------ECSIRRGIPTVHKIFGTKIAVLAGDFLFAQSSWYLANL 130 (323)
T ss_pred HHHHHHHHHHHHHHHHccccc--------CccccCCCccHHHHhCCcchhhhHHHHHHHHHHHHHhC
Confidence 345556666778889999966 35678888888777766555555555566666665544
No 34
>PRK13105 ubiA prenyltransferase; Reviewed
Probab=49.30 E-value=59 Score=30.84 Aligned_cols=60 Identities=17% Similarity=0.123 Sum_probs=47.8
Q ss_pred hHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCCcCChHHHHHHHHHHHHHHHHHHH
Q 019903 104 AFPTACALEMVHAASLIHDDLPCMDDDPSRRGQPSNHTVYGVDIAILAGDALFPLGFQHIV 164 (334)
Q Consensus 104 ~~~lA~avEliH~asLIhDDIp~iD~s~~RRG~pt~h~~~G~~~Avl~GD~L~~~a~~~l~ 164 (334)
..-++.++=+.-.+.++.-+++|+|.|. +.|+.|.-.++|.+.|....-.++..++-.+.
T Consensus 162 ~~l~~~~~~~~~~a~~ii~~irDie~Dr-~~G~~Tlpv~lG~~~a~~~~~~l~~~a~~~~~ 221 (282)
T PRK13105 162 LWAVLAAFFLWGMASHAFGAVQDVVADR-EAGIASIATVLGARRTVRLAVGLYAAAAVLML 221 (282)
T ss_pred HHHHHHHHHHHHHHHHHHHhCcchHhHH-HcCCccchHHhcHHHHHHHHHHHHHHHHHHHH
Confidence 4456667777788899999998777765 68999999999999999888787777764443
No 35
>cd00867 Trans_IPPS Trans-Isoprenyl Diphosphate Synthases. Trans-Isoprenyl Diphosphate Synthases (Trans_IPPS) of class 1 isoprenoid biosynthesis enzymes which either synthesis geranyl/farnesyl diphosphates (GPP/FPP) or longer chained products from isoprene precursors, isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), or use geranyl (C10)-, farnesyl (C15)-, or geranylgeranyl (C20)-diphosphate as substrate. These enzymes produce a myriad of precursors for such end products as steroids, cholesterol, sesquiterpenes, heme, carotenoids, retinoids, diterpenes, ubiquinone, and archaeal ether linked lipids; and are widely distributed among archaea, bacteria, and eukareya. The enzymes in this family share the same 'isoprenoid synthase fold' and include the head-to-tail (HT) IPPS which catalyze the successive 1'-4 condensation of the 5-carbon IPP to the growing isoprene chain to form linear, all-trans, C10-, C15-, C20- C25-, C30-, C35-, C40-, C45-, or C50-isoprenoid diphosphates
Probab=48.57 E-value=1.2e+02 Score=27.14 Aligned_cols=36 Identities=19% Similarity=0.078 Sum_probs=24.7
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHHhHHhhHhhh
Q 019903 226 CGGFLAGADDDEIQSLRRYGRAVGVLYQVVDDILEA 261 (334)
Q Consensus 226 lGa~lag~~~~~~~~l~~~G~~lG~afQi~DD~lD~ 261 (334)
+.+...|.+.+.+-.+..--+.+=.+.-+.||+.|=
T Consensus 8 ~~~~~~~~~~~~~~~~a~ave~l~~~~li~DDI~D~ 43 (236)
T cd00867 8 LLARALGGDLEAALRLAAAVELLHAASLVHDDIVDD 43 (236)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHcccccC
Confidence 333344555665566777777777888899999873
No 36
>PRK13105 ubiA prenyltransferase; Reviewed
Probab=43.80 E-value=1.8e+02 Score=27.59 Aligned_cols=45 Identities=16% Similarity=0.203 Sum_probs=35.4
Q ss_pred HHHHHhHHhhHhhhhcCCCCCchHHhhcCchHHHHhHHHHHHHHHHHHHHHH
Q 019903 248 VGVLYQVVDDILEAKAQTPRDEEKKKKKGKSYVAFYGVEKAMEVAEELRAKA 299 (334)
Q Consensus 248 lG~afQi~DD~lD~~~~~~~~~~Dl~~~k~t~~~~~gle~a~~~a~~~~~~A 299 (334)
...++.+.+++.|+. .|.+.|+.|++...|.+.+...+.-..--+
T Consensus 172 ~~~a~~ii~~irDie-------~Dr~~G~~Tlpv~lG~~~a~~~~~~l~~~a 216 (282)
T PRK13105 172 WGMASHAFGAVQDVV-------ADREAGIASIATVLGARRTVRLAVGLYAAA 216 (282)
T ss_pred HHHHHHHHHhCcchH-------hHHHcCCccchHHhcHHHHHHHHHHHHHHH
Confidence 366899999999986 566889999999999988887766544333
No 37
>PRK12884 ubiA prenyltransferase; Reviewed
Probab=39.82 E-value=3.1e+02 Score=25.38 Aligned_cols=162 Identities=14% Similarity=0.173 Sum_probs=80.5
Q ss_pred hHHHHHHHHHHHHHHHHHhCCCCCCCCCC---CCCCCCCCCcCChHHHHHHHHHHHHHHHHHHHhcCCCCCCChHHHHHH
Q 019903 104 AFPTACALEMVHAASLIHDDLPCMDDDPS---RRGQPSNHTVYGVDIAILAGDALFPLGFQHIVSHTPPHLVPEPRVLRV 180 (334)
Q Consensus 104 ~~~lA~avEliH~asLIhDDIp~iD~s~~---RRG~pt~h~~~G~~~Avl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~l 180 (334)
..-...++=++|.+.-+..|+ .|-+.. |..+|-...+...+.|...+-.+...++-...-.. . . .-.
T Consensus 39 ~~l~~l~~~l~~~a~~~~Nd~--~D~~~D~~~r~~Rpl~~G~is~~~a~~~~~~~~~~~~~~~~~l~------~-~-~~~ 108 (279)
T PRK12884 39 ALLGFLTAFFASGSANALNDY--FDYEVDRINRPDRPIPSGRISRREALLLAILLFILGLIAAYLIS------P-L-AFL 108 (279)
T ss_pred HHHHHHHHHHHHHHHHHHHhh--hhHhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHh------H-H-HHH
Confidence 334455677999999999999 554432 55566666666677777766555555543222111 0 0 011
Q ss_pred HHHHHHHHhhhhhhhHhhhhccCCh-hHHHHHHHhhHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHhhHh
Q 019903 181 IAEIARAVGSTGMAAGQFLDLEGEP-NLVEFVQEKKFGEMSECSAVCGGFLAGADDDEIQSLRRYGRAVGVLYQVVDDIL 259 (334)
Q Consensus 181 ~~~~~~~~~~~~~~~GQ~lDl~~~~-~~y~~i~~~KTa~Lf~~a~~lGa~lag~~~~~~~~l~~~G~~lG~afQi~DD~l 259 (334)
+.-+. ...+=..-..... ..+-.+. .|..+..+...|....+......-.+.-+.--..+.+++..|+.
T Consensus 109 ~~~~~-------~~~~~~Ys~~lK~~~~~~~~~---~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 178 (279)
T PRK12884 109 VVILV-------SVLGILYNWKLKEYGLIGNLY---VAFLTGMTFIFGGIAVGELNEAVILLAAMAFLMTLGREIMKDIE 178 (279)
T ss_pred HHHHH-------HHHHHHHHHhhccccchhHHH---HHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHHHHhh
Confidence 10000 1111111100000 0001111 12223344444544444332222233334445556677788888
Q ss_pred hhhcCCCCCchHHhhcCchHHHHhHHHHHHHHH
Q 019903 260 EAKAQTPRDEEKKKKKGKSYVAFYGVEKAMEVA 292 (334)
Q Consensus 260 D~~~~~~~~~~Dl~~~k~t~~~~~gle~a~~~a 292 (334)
|.. +|.+.|..|++...|.+.+...+
T Consensus 179 D~e-------~D~~~G~~Tl~v~~G~~~~~~~~ 204 (279)
T PRK12884 179 DVE-------GDRLRGARTLAILYGEKIAGRIA 204 (279)
T ss_pred hhh-------hHHHcCCeeechHhcHHHHHHHH
Confidence 865 56677888888877776665544
No 38
>PF03936 Terpene_synth_C: Terpene synthase family, metal binding domain; InterPro: IPR005630 Sequences containing this domain belong to the terpene synthase family. It has been suggested that this gene family be designated tps (for terpene synthase). Sequence comparisons reveal similarities between the monoterpene (C10) synthases, sesquiterpene (C15) synthases and the diterpene (C20) synthases. It has been split into six subgroups on the basis of phylogeny, called Tpsa-Tpsf []. Tpsa includes vetispiridiene synthase Q39979 from SWISSPROT, 5-epi- aristolochene synthase, Q40577 from SWISSPROT and (+)-delta-cadinene synthase P93665 from SWISSPROT . Tpsb includes (-)-limonene synthase, Q40322 from SWISSPROT. Tpsc includes copalyl diphosphate synthase (kaurene synthase A), O04408 from SWISSPROT. Tpsd includes taxadiene synthase, Q41594 from SWISSPROT, pinene synthase, O24475 from SWISSPROT and myrcene synthase, O24474 from SWISSPROT. Tpse includes ent-kaurene synthase B Q39548 from SWISSPROT. Tpsf includes linalool synthase Q9ZPN5 from SWISSPROT. In the fungus Phaeosphaeria sp. (strain L487) the synthesis of ent-kaurene from geranylgeranyl dophosphate is promoted by a single bifunctional protein [].; GO: 0000287 magnesium ion binding, 0016829 lyase activity; PDB: 3PYB_A 3PYA_A 3G4F_A 3G4D_B 3CKE_A 2OA6_D 2E4O_B 3BNY_B 3BNX_A 3LG5_A ....
Probab=37.57 E-value=2.3e+02 Score=25.51 Aligned_cols=53 Identities=17% Similarity=0.244 Sum_probs=33.0
Q ss_pred HHHHHHHHHhHHhhHhhhhcCCCCCchHHhhcCc-hHHH------HhHHHHHHHHHHHHHHHHHHHH
Q 019903 244 YGRAVGVLYQVVDDILEAKAQTPRDEEKKKKKGK-SYVA------FYGVEKAMEVAEELRAKAKEEL 303 (334)
Q Consensus 244 ~G~~lG~afQi~DD~lD~~~~~~~~~~Dl~~~k~-t~~~------~~gle~a~~~a~~~~~~A~~~L 303 (334)
+-...+..--+.||+..+.. ++.+|.. +.+. ...++.|.+.+.+.++++.+.+
T Consensus 210 l~~~~~~~~~l~NDl~S~~K-------E~~~g~~~N~v~~l~~~~~~s~e~A~~~v~~~~~~~~~ef 269 (270)
T PF03936_consen 210 LRRLAADIIRLVNDLYSYKK-------EIARGDVHNLVVVLMNEHGLSLEEAVDEVAEMINECIREF 269 (270)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-------HHHTTSCCSHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccchhhc-------chhhcccccHHHHhhhhcCCCHHHHHHHHHHHHHHHHHhc
Confidence 56666666677799999853 2233322 2221 1356788888888888877765
No 39
>PRK12875 ubiA prenyltransferase; Reviewed
Probab=35.65 E-value=1.1e+02 Score=28.92 Aligned_cols=43 Identities=16% Similarity=0.106 Sum_probs=32.7
Q ss_pred HHHHHHHHHHhCCCCCCCCCCCCCCCCCCCcCChHHHHHHHHHH
Q 019903 112 EMVHAASLIHDDLPCMDDDPSRRGQPSNHTVYGVDIAILAGDAL 155 (334)
Q Consensus 112 EliH~asLIhDDIp~iD~s~~RRG~pt~h~~~G~~~Avl~GD~L 155 (334)
=++..+.++..+++|+++|. |.|++|.-.++|.+.+....-.+
T Consensus 175 ~l~~~~~~~in~i~Die~D~-~aGi~Tlav~lG~~~a~~~~~~~ 217 (282)
T PRK12875 175 WLWAMGMHTFSAIPDIEPDR-AAGIRTTATVLGERRTYAYCAAC 217 (282)
T ss_pred HHHHHHHHHHHhccCHHHHH-HcCCccchhhccHhhHHHHHHHH
Confidence 36677778889997766554 89999999999999887443333
No 40
>PRK12872 ubiA prenyltransferase; Reviewed
Probab=35.13 E-value=1.4e+02 Score=27.76 Aligned_cols=43 Identities=19% Similarity=0.218 Sum_probs=32.0
Q ss_pred HHHHHHhHHhhHhhhhcCCCCCchHHhhcCchHHHHhHHHHHHHHHHHHH
Q 019903 247 AVGVLYQVVDDILEAKAQTPRDEEKKKKKGKSYVAFYGVEKAMEVAEELR 296 (334)
Q Consensus 247 ~lG~afQi~DD~lD~~~~~~~~~~Dl~~~k~t~~~~~gle~a~~~a~~~~ 296 (334)
-+-...++..|+.|.. .|.+.|..|+|...|.++++....-..
T Consensus 172 l~~~~~~~~~d~~D~e-------~D~~~G~~Tlpv~lG~~~t~~~~~~~~ 214 (285)
T PRK12872 172 LKSFIREIVFDIKDIE-------GDRKSGLKTLPIVLGKERTLKFLLILN 214 (285)
T ss_pred HHHHHHHHHHhcccch-------hHHHcCCcccchhcchHHHHHHHHHHH
Confidence 3456788999998876 456788999998888887776655443
No 41
>PRK06080 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated
Probab=33.55 E-value=1.6e+02 Score=27.53 Aligned_cols=59 Identities=20% Similarity=0.247 Sum_probs=44.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCCcCChHHHHHHHHHHHHHHHH
Q 019903 102 IAAFPTACALEMVHAASLIHDDLPCMDDDPSRRGQPSNHTVYGVDIAILAGDALFPLGFQ 161 (334)
Q Consensus 102 ~~~~~lA~avEliH~asLIhDDIp~iD~s~~RRG~pt~h~~~G~~~Avl~GD~L~~~a~~ 161 (334)
....-++..+-++-...++..|++|+++|. +.|+.|.-..+|.+.+...--.++..++-
T Consensus 168 ~~~~~~~l~~~l~~~~~~~~n~~~D~~~D~-~~G~~Tl~v~lG~~~a~~~~~~l~~~~~~ 226 (293)
T PRK06080 168 SAVFLPALPCGLLIGAVLLANNIRDIETDR-ENGKNTLAVRLGDKNARRLHAALLALAYL 226 (293)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCcchhHH-HcCCeeEEeeECcHhHHHHHHHHHHHHHH
Confidence 445666777778888888999997776665 78999999999999876665555555443
No 42
>PRK07566 bacteriochlorophyll/chlorophyll a synthase; Reviewed
Probab=33.47 E-value=1.2e+02 Score=29.02 Aligned_cols=57 Identities=16% Similarity=0.095 Sum_probs=38.3
Q ss_pred hhHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCCcCChHHHHHHHHHHHHHHH
Q 019903 103 AAFPTACALEMVHAASLIHDDLPCMDDDPSRRGQPSNHTVYGVDIAILAGDALFPLGF 160 (334)
Q Consensus 103 ~~~~lA~avEliH~asLIhDDIp~iD~s~~RRG~pt~h~~~G~~~Avl~GD~L~~~a~ 160 (334)
...-++...-+...+.++..|++|+++|. +.|++|.-..+|.+.+....-+++..++
T Consensus 190 ~~~l~~~~~~l~~~~~~~~~d~~D~e~D~-~aG~~Tlpv~~G~~~a~~l~~~l~~~~~ 246 (314)
T PRK07566 190 PIVILALLYSLGAHGIMTLNDFKSVEGDR-QLGLRSLPVVFGEKNAARIACVVIDLFQ 246 (314)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhHH-HcCCcccceeEcHHHHHHHHHHHHHHHH
Confidence 33444455555666677888885555443 6799999999999987766655554443
No 43
>PF10776 DUF2600: Protein of unknown function (DUF2600); InterPro: IPR019712 This is a bacterial family of proteins. Some members in the family are annotated as YtpB, however no function is currently known.
Probab=31.77 E-value=58 Score=31.65 Aligned_cols=99 Identities=14% Similarity=0.135 Sum_probs=54.9
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHhhHhhhhcCCCC--CchHHhhcCch-------------HHHHhHHH
Q 019903 222 CSAVCGGFLAGADDDEIQSLRRYGRAVGVLYQVVDDILEAKAQTPR--DEEKKKKKGKS-------------YVAFYGVE 286 (334)
Q Consensus 222 ~a~~lGa~lag~~~~~~~~l~~~G~~lG~afQi~DD~lD~~~~~~~--~~~Dl~~~k~t-------------~~~~~gle 286 (334)
+-|+.|++.+-.+....+.+ ..+=+|||-+.|+||=.-+... ...|.+.--.+ |-..+--+
T Consensus 35 FHceGgsi~al~~~~~~~~~----i~fIVAyQTIsDYLDNLcDrs~~~d~~~Fr~LH~am~dAl~p~a~~~dYY~~~~~~ 110 (330)
T PF10776_consen 35 FHCEGGSIYALLPGENRDEL----IRFIVAYQTISDYLDNLCDRSTSLDPKDFRQLHQAMLDALDPGAPLSDYYRYRPEQ 110 (330)
T ss_pred cCCcchhhhhhcCCccHhhH----HHHHHHHHHHHHHHHhhhhccCCCChHHHHHHHHHHHHHcCCCCCcchHHHcCCcc
Confidence 34677777664433322222 3345899999999996544321 12332211111 11111000
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHH
Q 019903 287 KAMEVAEELRAKAKEELDRFKKYGDNVLPLYSFIDYAA 324 (334)
Q Consensus 287 ~a~~~a~~~~~~A~~~L~~lp~~~~~~~~L~~l~~~~~ 324 (334)
.=--....+++.+++.|..||.+...+..+.+++.+-.
T Consensus 111 dDGGYL~~LV~tCq~~l~~lP~y~~V~~~l~~la~lY~ 148 (330)
T PF10776_consen 111 DDGGYLRALVRTCQQVLAQLPSYELVRPYLLELARLYS 148 (330)
T ss_pred ccChHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 11135667888999999999986666777877777543
No 44
>PLN02878 homogentisate phytyltransferase
Probab=31.62 E-value=1.8e+02 Score=27.73 Aligned_cols=49 Identities=14% Similarity=0.172 Sum_probs=37.6
Q ss_pred HHHHHHHHHHhCCCCCCCCCCCCCCCCCCCcCChHHHHHHHHHHHHHHHH
Q 019903 112 EMVHAASLIHDDLPCMDDDPSRRGQPSNHTVYGVDIAILAGDALFPLGFQ 161 (334)
Q Consensus 112 EliH~asLIhDDIp~iD~s~~RRG~pt~h~~~G~~~Avl~GD~L~~~a~~ 161 (334)
=+.-.+-.+..|+||+++|. ..|..|.-.++|.+.+....-.++..++-
T Consensus 166 ~~f~~~i~i~KDi~DieGD~-~~Gi~Tlpv~lG~~~~~~i~~~ll~~aY~ 214 (280)
T PLN02878 166 CFFSVVIALFKDIPDVEGDR-IFGIRSFSVRLGQKRVFWLCVNLLEMAYA 214 (280)
T ss_pred HHHHHHHHHHhhCcCchhHH-HCCCceechhhChHHHHHHHHHHHHHHHH
Confidence 33444556899999887765 68899999999998887777777776664
No 45
>COG0142 IspA Geranylgeranyl pyrophosphate synthase [Coenzyme metabolism]
Probab=31.45 E-value=87 Score=30.16 Aligned_cols=61 Identities=18% Similarity=0.235 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHhHHhhHhhhhcCCCCCchHHhhcCchHHHHhHHHHHHHHHHHHHHHHHHHHhhccC
Q 019903 240 SLRRYGRAVGVLYQVVDDILEAKAQTPRDEEKKKKKGKSYVAFYGVEKAMEVAEELRAKAKEELDRFKK 308 (334)
Q Consensus 240 ~l~~~G~~lG~afQi~DD~lD~~~~~~~~~~Dl~~~k~t~~~~~gle~a~~~a~~~~~~A~~~L~~lp~ 308 (334)
.+...-+.+=.+.=|.||+.| .+|+++|++|....+|-..|--..+-+...|.+.+.....
T Consensus 70 ~~aaavEliH~~SLiHDDvmD--------~s~~RRG~pt~~~~~g~~~AIlaGD~L~~~Af~~l~~~~~ 130 (322)
T COG0142 70 DLAAAIELIHTASLIHDDLMD--------DDDLRRGKPTVHAKFGEATAILAGDALLAAAFELLSKLGS 130 (322)
T ss_pred HHHHHHHHHHHHHHHHhhccc--------CCCccCCCCCchhHhccHHHHHHHHHHHHHHHHHHHhCCc
Confidence 344444555566778999955 4788999999999998887877888888888888887653
No 46
>PRK13595 ubiA prenyltransferase; Provisional
Probab=31.26 E-value=3.8e+02 Score=25.65 Aligned_cols=78 Identities=13% Similarity=-0.101 Sum_probs=52.9
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHhhHhhhhcCCCCCchHHhhcCchHHHHhHHHHHHHHHHHHHHHH
Q 019903 220 SECSAVCGGFLAGADDDEIQSLRRYGRAVGVLYQVVDDILEAKAQTPRDEEKKKKKGKSYVAFYGVEKAMEVAEELRAKA 299 (334)
Q Consensus 220 f~~a~~lGa~lag~~~~~~~~l~~~G~~lG~afQi~DD~lD~~~~~~~~~~Dl~~~k~t~~~~~gle~a~~~a~~~~~~A 299 (334)
+..+...|+...|......- --...-.+++|++.-|+.|+. .|.+.|..|.+..+|.+.+...+.-..--|
T Consensus 155 ~g~p~~~~~~~~g~~~~~~~--l~a~~~w~~g~dii~ai~Die-------gDr~~Gi~Slpv~lG~r~a~~~a~~~~~~a 225 (292)
T PRK13595 155 YALPLALPALALGAPVPWPP--LLALMAWSVGKHAFDAAQDIP-------ADRAAGTRTVATTLGVRGTALYALAWFLLA 225 (292)
T ss_pred HHHHHHHHHHHcCCcchHHH--HHHHHHHHHHHHHHHhccChH-------hHHHcCCeechHHhCcHhHHHHHHHHHHHH
Confidence 45566677777775432221 223345568999999999964 567889999999999888888777665555
Q ss_pred HHHHhhc
Q 019903 300 KEELDRF 306 (334)
Q Consensus 300 ~~~L~~l 306 (334)
.-.+-.+
T Consensus 226 ~~~~~~~ 232 (292)
T PRK13595 226 GALLWPV 232 (292)
T ss_pred HHHHHHh
Confidence 5444443
No 47
>TIGR02056 ChlG chlorophyll synthase, ChlG. This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP).
Probab=31.06 E-value=2e+02 Score=27.41 Aligned_cols=52 Identities=13% Similarity=0.170 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCCcCChHHHHHHHHHHHHH
Q 019903 106 PTACALEMVHAASLIHDDLPCMDDDPSRRGQPSNHTVYGVDIAILAGDALFPL 158 (334)
Q Consensus 106 ~lA~avEliH~asLIhDDIp~iD~s~~RRG~pt~h~~~G~~~Avl~GD~L~~~ 158 (334)
-++..+=+.-.+.++..|++|+++|. |.|++|.-..+|.+.+......++..
T Consensus 187 l~~~~~~l~~~~i~~~n~~~D~e~D~-~~G~~Tlpv~lG~~~a~~~~~~l~~~ 238 (306)
T TIGR02056 187 VLTLIYSIAGLGIAIVNDFKSVEGDR-ALGLQSLPVAFGIETAAWICVGAIDI 238 (306)
T ss_pred HHHHHHHHHHHHHHHHHHccChHHHH-HcCCcCcchhcChHHHHHHHHHHHHH
Confidence 34444445666777889997665554 78999999999999887776655444
No 48
>PLN02890 geranyl diphosphate synthase
Probab=30.55 E-value=1.6e+02 Score=29.66 Aligned_cols=59 Identities=15% Similarity=0.201 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHhHHhhHhhhhcCCCCCchHHhhcCchHHHHhHHHHHHHHHHHHHHHHHHHHhhc
Q 019903 240 SLRRYGRAVGVLYQVVDDILEAKAQTPRDEEKKKKKGKSYVAFYGVEKAMEVAEELRAKAKEELDRF 306 (334)
Q Consensus 240 ~l~~~G~~lG~afQi~DD~lD~~~~~~~~~~Dl~~~k~t~~~~~gle~a~~~a~~~~~~A~~~L~~l 306 (334)
.+...-+.+=.|.-|.||+.| +.+.++|+.|+-..+|...|--..+-+..+|...+..+
T Consensus 165 ~~AaavEliH~ASLVHDDIiD--------~s~~RRG~pt~~~~~G~~~AIlaGD~Lla~A~~~l~~~ 223 (422)
T PLN02890 165 NIAEITEMIHVASLLHDDVLD--------DADTRRGVGSLNVVMGNKLSVLAGDFLLSRACVALAAL 223 (422)
T ss_pred HHHHHHHHHHHHHHHHccccc--------CCCCcCCCcChhhhcChHHHHHHHHHHHHHHHHHHHcC
Confidence 455566777778899999977 35678888888777777666666666677777766554
No 49
>PLN00012 chlorophyll synthetase; Provisional
Probab=30.04 E-value=1.6e+02 Score=29.18 Aligned_cols=42 Identities=19% Similarity=0.180 Sum_probs=32.6
Q ss_pred HHHHHHHHhHHhhHhhhhcCCCCCchHHhhcCchHHHHhHHHHHHHHHH
Q 019903 245 GRAVGVLYQVVDDILEAKAQTPRDEEKKKKKGKSYVAFYGVEKAMEVAE 293 (334)
Q Consensus 245 G~~lG~afQi~DD~lD~~~~~~~~~~Dl~~~k~t~~~~~gle~a~~~a~ 293 (334)
.--+++++-+.+|+.|+. .|.+.|+.|++...|.++++..+-
T Consensus 261 ~~l~~lai~ivnd~~Die-------~Dr~aG~~TLpV~~G~~~a~~l~~ 302 (375)
T PLN00012 261 YSIAGLGIAIVNDFKSIE-------GDRALGLQSLPVAFGVETAKWICV 302 (375)
T ss_pred HHHHHHHHHHHhhhcchh-------hHHHcCCcccceeechHHHHHHHH
Confidence 335788899999998875 567788999998888877766553
No 50
>PRK12884 ubiA prenyltransferase; Reviewed
Probab=28.80 E-value=1.8e+02 Score=26.99 Aligned_cols=57 Identities=25% Similarity=0.224 Sum_probs=34.2
Q ss_pred CCCchhhHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCCcCChHHHHHHHHHH
Q 019903 98 GVNRIAAFPTACALEMVHAASLIHDDLPCMDDDPSRRGQPSNHTVYGVDIAILAGDAL 155 (334)
Q Consensus 98 g~~~~~~~~lA~avEliH~asLIhDDIp~iD~s~~RRG~pt~h~~~G~~~Avl~GD~L 155 (334)
++......-++..+=+......+.-|++|+|+| .+.|.+|.-..+|.+.+....-.+
T Consensus 151 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~D~e~D-~~~G~~Tl~v~~G~~~~~~~~~~~ 207 (279)
T PRK12884 151 GELNEAVILLAAMAFLMTLGREIMKDIEDVEGD-RLRGARTLAILYGEKIAGRIAAAL 207 (279)
T ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHhhhhhhH-HHcCCeeechHhcHHHHHHHHHHH
Confidence 443334444444343444444555677544443 478899999999999887655443
No 51
>PLN02922 prenyltransferase
Probab=28.76 E-value=2.4e+02 Score=27.10 Aligned_cols=56 Identities=13% Similarity=0.102 Sum_probs=43.5
Q ss_pred hHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCCcCChHHHHHHHHHHHHHHH
Q 019903 104 AFPTACALEMVHAASLIHDDLPCMDDDPSRRGQPSNHTVYGVDIAILAGDALFPLGF 160 (334)
Q Consensus 104 ~~~lA~avEliH~asLIhDDIp~iD~s~~RRG~pt~h~~~G~~~Avl~GD~L~~~a~ 160 (334)
..-++..+-++-++-|...+++|+++|. |-||-|.-..+|.+.|...=-.++..++
T Consensus 190 ~~l~slp~gll~~~iL~~Nn~rD~e~D~-~~Gk~TL~v~lG~~~a~~l~~~l~~~~y 245 (315)
T PLN02922 190 VLSASVLVGLTTTLILFCSHFHQIDGDR-AVGKMSPLVRLGTEKGSRVVRWAVLLLY 245 (315)
T ss_pred HHHHHHHHHHHHHHHHHHccCcchhhHH-HcCccceeeEEChHHHHHHHHHHHHHHH
Confidence 4456777888888999999998877654 7889999999999988766555555554
No 52
>TIGR01476 chlor_syn_BchG bacteriochlorophyll/chlorophyll synthetase. This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana.
Probab=27.37 E-value=2.9e+02 Score=25.70 Aligned_cols=52 Identities=15% Similarity=0.157 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCCcCChHHHHHHHHHHHH
Q 019903 105 FPTACALEMVHAASLIHDDLPCMDDDPSRRGQPSNHTVYGVDIAILAGDALFP 157 (334)
Q Consensus 105 ~~lA~avEliH~asLIhDDIp~iD~s~~RRG~pt~h~~~G~~~Avl~GD~L~~ 157 (334)
.-++..+-+.-.+.+...|++|+++|. +.|++|.-..+|.+.+...--.++.
T Consensus 164 ~~~~~~~~l~~~~i~~~nd~~D~~~D~-~~G~~Tl~v~lG~~~a~~l~~~l~~ 215 (283)
T TIGR01476 164 VVVALIYSLGAHGIMTLNDFKSVEGDR-QLGLRSLPVMIGVKRAAIVAVTTIN 215 (283)
T ss_pred HHHHHHHHHHHHHHHHHHhccchhhHH-HcCCcCcceEEcHHHHHHHHHHHHH
Confidence 334455556666778999996655554 6799999999999987765444333
No 53
>PRK09573 (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed
Probab=27.28 E-value=5.1e+02 Score=24.05 Aligned_cols=55 Identities=18% Similarity=0.205 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCCCCCC---CCCCCCCCCcCChHHHHHHHHHHHHHHHH
Q 019903 105 FPTACALEMVHAASLIHDDLPCMDDDPS---RRGQPSNHTVYGVDIAILAGDALFPLGFQ 161 (334)
Q Consensus 105 ~~lA~avEliH~asLIhDDIp~iD~s~~---RRG~pt~h~~~G~~~Avl~GD~L~~~a~~ 161 (334)
.-...++=++|.+.-+..|+ .|-+.. ++.+|-...+...+.|...+-.++..++-
T Consensus 40 ~l~~l~~~l~~~~~~~iNd~--~D~~iD~~~~~~Rpl~sG~is~~~a~~~~~~l~~~~~~ 97 (279)
T PRK09573 40 ILAALVVFLVCAGGNVINDI--YDIEIDKINKPERPIPSGRISLKEAKIFSITLFIVGLI 97 (279)
T ss_pred HHHHHHHHHHHHHHHHHHhh--cccccccccCCCCCcCCCccCHHHHHHHHHHHHHHHHH
Confidence 33444666899999999999 654433 36788888888889999888777776663
No 54
>PLN02857 octaprenyl-diphosphate synthase
Probab=25.97 E-value=2.3e+02 Score=28.43 Aligned_cols=34 Identities=21% Similarity=0.098 Sum_probs=23.4
Q ss_pred HHHHhCCCchhhHHHHHHHHHHHHHHHHHhCCCCCC
Q 019903 93 ACELFGVNRIAAFPTACALEMVHAASLIHDDLPCMD 128 (334)
Q Consensus 93 ~~~~~g~~~~~~~~lA~avEliH~asLIhDDIp~iD 128 (334)
++-+.|.+++....+..--+.+=.|+-|.||| +|
T Consensus 279 gallaga~~~~~~~l~~fG~~LGiAFQI~DDi--LD 312 (416)
T PLN02857 279 AAIFSGVDSSVKEQMYEYGKNLGLAFQVVDDI--LD 312 (416)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHH--Hh
Confidence 33334555555555666668888899999999 76
No 55
>PF15476 SAP25: Histone deacetylase complex subunit SAP25; PDB: 2RMS_B.
Probab=24.39 E-value=25 Score=30.69 Aligned_cols=16 Identities=19% Similarity=0.467 Sum_probs=0.0
Q ss_pred CCcCCCCCccCCCCCc
Q 019903 12 PCVCLPRKFPVRCSSL 27 (334)
Q Consensus 12 ~~~~~~~~~~~~~~~~ 27 (334)
-.+|||+|||+-=+.+
T Consensus 34 RTLcHPSfWPlYea~s 49 (204)
T PF15476_consen 34 RTLCHPSFWPLYEAAS 49 (204)
T ss_dssp ----------------
T ss_pred ccccCCCcchhhhhhc
Confidence 3589999999865553
No 56
>TIGR02056 ChlG chlorophyll synthase, ChlG. This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP).
Probab=23.48 E-value=6.4e+02 Score=23.90 Aligned_cols=50 Identities=16% Similarity=0.064 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHhCCCCCCCCCCC---CCCCCCCCcCChHHHHHHHHHHHHHHH
Q 019903 109 CALEMVHAASLIHDDLPCMDDDPSR---RGQPSNHTVYGVDIAILAGDALFPLGF 160 (334)
Q Consensus 109 ~avEliH~asLIhDDIp~iD~s~~R---RG~pt~h~~~G~~~Avl~GD~L~~~a~ 160 (334)
.+.=++|.++-++.|+ .|.+..| |.+|........+.+...+-.++..++
T Consensus 61 l~~~l~~~~~n~~NDy--~D~d~D~~~~~~Rpi~~G~is~~~a~~~~~~l~~~~~ 113 (306)
T TIGR02056 61 LSGPCLTGYTQTINDF--YDRDIDAINEPYRPIPSGAISEPEVITQIVLLFIAGI 113 (306)
T ss_pred HHHHHHHHHHHHHHhH--hhhhhhccCCCCCCCCCCccCHHHHHHHHHHHHHHHH
Confidence 4557899999999999 7755333 456666666777888777755555443
No 57
>PF12029 DUF3516: Domain of unknown function (DUF3516); InterPro: IPR021904 This presumed domain is functionally uncharacterised. This domain is found in bacteria. This domain is typically between 460 to 473 amino acids in length. This domain is found associated with PF00270 from PFAM, PF00271 from PFAM.
Probab=23.36 E-value=1.2e+02 Score=30.78 Aligned_cols=55 Identities=16% Similarity=0.283 Sum_probs=43.6
Q ss_pred hHHhhcCch---HHHHhHHHHHHHHHHHHHHHHHHHHhh-ccCCCCChHHHHHHHHHHHh
Q 019903 270 EKKKKKGKS---YVAFYGVEKAMEVAEELRAKAKEELDR-FKKYGDNVLPLYSFIDYAAD 325 (334)
Q Consensus 270 ~Dl~~~k~t---~~~~~gle~a~~~a~~~~~~A~~~L~~-lp~~~~~~~~L~~l~~~~~~ 325 (334)
.|.-+.-.| |+..|++.++.-+.-+|...|.+.|.+ +|+ ....+.|.+|+.++.+
T Consensus 246 RdM~E~amtF~dyV~~YgLaRSEGvlLRYLsDAyraL~qtVP~-~~rteel~dii~WLge 304 (461)
T PF12029_consen 246 RDMYERAMTFSDYVSRYGLARSEGVLLRYLSDAYRALRQTVPE-DARTEELEDIIEWLGE 304 (461)
T ss_pred HHHHHhhCCHHHHHHHhCcchhhhHHHHHHHHHHHHHhhhCCh-hhcCchHHHHHHHHHH
Confidence 344444444 578899999999999999999999997 676 4556789999999865
No 58
>KOG0776 consensus Geranylgeranyl pyrophosphate synthase/Polyprenyl synthetase [Coenzyme transport and metabolism]
Probab=22.17 E-value=4.7e+02 Score=26.09 Aligned_cols=68 Identities=18% Similarity=0.283 Sum_probs=47.3
Q ss_pred CCHHHHHHHHHHHHHHHHHHhHHhhH--hhhhcCCCCCchHHhhcCchHHHHhHHHHHHHHHHHHHHHHHHHHhhccC
Q 019903 233 ADDDEIQSLRRYGRAVGVLYQVVDDI--LEAKAQTPRDEEKKKKKGKSYVAFYGVEKAMEVAEELRAKAKEELDRFKK 308 (334)
Q Consensus 233 ~~~~~~~~l~~~G~~lG~afQi~DD~--lD~~~~~~~~~~Dl~~~k~t~~~~~gle~a~~~a~~~~~~A~~~L~~lp~ 308 (334)
..+.....+..+-+-|=++-=|.||+ +| ..|+++||.|--..+|-.-|--.-+-+...|.+.|..+..
T Consensus 125 g~~~~q~~~A~i~EMIHtaSLIHDDv~~mD--------~~d~RRGkpt~h~vfG~k~AvLaGD~LLa~A~~~la~l~n 194 (384)
T KOG0776|consen 125 GDESSQRSLAEIVEMIHTASLIHDDVPCMD--------DADLRRGKPTNHKVFGNKMAVLAGDALLALASEHLASLEN 194 (384)
T ss_pred cccHHHHHHHHHHHHHHHHHHHhcCccccc--------ccccccCCCCcchhhcchhhhhhhHHHHHHHHHHHHhccC
Confidence 44455567888889999999999999 65 3567778877666666554544555556666777766654
Done!