Query 019903
Match_columns 334
No_of_seqs 232 out of 1463
Neff 7.1
Searched_HMMs 29240
Date Mon Mar 25 08:49:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019903.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019903hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f62_A Geranyltranstransferase 100.0 3.3E-66 1.1E-70 492.1 31.0 285 40-331 3-298 (317)
2 3ts7_A Geranyltranstransferase 100.0 1E-65 3.4E-70 490.1 30.6 288 39-331 6-305 (324)
3 3lsn_A Geranyltranstransferase 100.0 1.8E-65 6.3E-70 485.2 30.8 284 40-328 1-296 (304)
4 1rqj_A Geranyltranstransferase 100.0 4.6E-65 1.6E-69 482.3 30.0 287 40-328 1-299 (299)
5 2h8o_A Geranyltranstransferase 100.0 3.7E-65 1.3E-69 488.8 29.7 283 40-328 37-335 (335)
6 3p8l_A Geranyltranstransferase 100.0 6.7E-65 2.3E-69 480.7 26.7 280 42-326 10-302 (302)
7 3lom_A Geranyltranstransferase 100.0 1E-64 3.6E-69 481.6 27.4 281 42-329 9-304 (313)
8 3uca_A Geranyltranstransferase 100.0 1.2E-64 4.1E-69 482.7 27.2 277 44-328 35-324 (324)
9 1rtr_A Geranyltranstransferase 100.0 2E-64 6.8E-69 478.1 28.2 281 40-329 4-294 (301)
10 3m0g_A Farnesyl diphosphate sy 100.0 9.2E-65 3.2E-69 479.0 24.1 278 40-328 1-289 (297)
11 3pde_A Farnesyl-diphosphate sy 100.0 1.2E-64 4.1E-69 479.9 23.2 284 41-330 7-302 (309)
12 3p8r_A Geranyltranstransferase 100.0 2.8E-64 9.6E-69 476.9 25.0 279 45-328 12-302 (302)
13 3llw_A Geranyltranstransferase 100.0 1.1E-63 3.9E-68 474.0 27.4 283 39-328 5-305 (311)
14 2j1p_A Geranylgeranyl pyrophos 100.0 1.4E-62 4.9E-67 463.9 30.5 279 36-328 7-293 (293)
15 3oyr_A Trans-isoprenyl diphosp 100.0 6.4E-61 2.2E-65 461.3 30.3 274 38-327 23-344 (345)
16 3ipi_A Geranyltranstransferase 100.0 3.6E-61 1.2E-65 454.0 23.7 261 51-329 12-285 (295)
17 3mzv_A Decaprenyl diphosphate 100.0 1.7E-60 5.7E-65 458.2 28.8 277 37-328 9-333 (341)
18 3npk_A Geranyltranstransferase 100.0 1.5E-60 5.2E-65 448.8 25.8 269 50-325 6-284 (291)
19 2ftz_A Geranyltranstransferase 100.0 1.5E-60 5.2E-65 447.6 24.6 259 49-326 14-284 (284)
20 1wy0_A Geranylgeranyl pyrophos 100.0 7E-60 2.4E-64 454.7 26.7 277 42-328 7-342 (342)
21 3lmd_A Geranylgeranyl pyrophos 100.0 2E-59 6.9E-64 452.8 26.5 272 40-328 34-352 (360)
22 3rmg_A Octaprenyl-diphosphate 100.0 1.9E-59 6.4E-64 449.9 25.2 272 41-328 8-326 (334)
23 2azj_A Geranylgeranyl pyrophos 100.0 2.8E-59 9.4E-64 440.2 24.8 272 38-330 7-283 (289)
24 4dhd_A Polyprenyl synthetase; 100.0 4.9E-59 1.7E-63 450.7 27.0 274 41-331 5-339 (358)
25 3aqb_B Component B of hexapren 100.0 2.4E-58 8.1E-63 441.2 26.3 272 41-328 5-325 (325)
26 3pko_A Geranylgeranyl pyrophos 100.0 1.3E-58 4.4E-63 444.1 23.8 269 44-328 19-334 (334)
27 3nf2_A Putative polyprenyl syn 100.0 3.4E-58 1.2E-62 443.7 26.0 277 41-328 4-344 (352)
28 3apz_A Geranyl diphosphate syn 100.0 3.6E-58 1.2E-62 443.8 25.0 268 45-328 13-348 (348)
29 1wmw_A Geranylgeranyl diphosph 100.0 7.7E-57 2.6E-61 431.6 23.4 268 48-328 7-330 (330)
30 3lk5_A Geranylgeranyl pyrophos 100.0 3.9E-55 1.3E-59 426.0 28.2 253 68-329 49-374 (380)
31 3kra_B Geranyl diphosphate syn 100.0 1.3E-54 4.4E-59 405.8 28.6 251 43-320 2-258 (274)
32 3tc1_A Octaprenyl pyrophosphat 100.0 4.8E-55 1.6E-59 415.9 21.0 256 48-324 4-307 (315)
33 2qis_A Farnesyl pyrophosphate 100.0 1.4E-54 4.6E-59 422.0 23.5 276 41-328 34-374 (374)
34 1v4e_A Octoprenyl-diphosphate 100.0 4.8E-55 1.6E-59 413.5 19.4 242 46-308 9-287 (299)
35 3qkc_B Geranyl diphosphate syn 100.0 2.1E-53 7.1E-58 397.5 29.5 251 41-323 5-259 (273)
36 2q80_A Geranylgeranyl pyrophos 100.0 1.1E-54 3.6E-59 411.6 17.8 243 67-331 11-300 (301)
37 1yhl_A Farnesyl pyrophosphate 100.0 6.5E-54 2.2E-58 416.1 23.7 274 43-328 5-362 (362)
38 2her_A Fragment, farnesyl pyro 100.0 2.2E-55 7.7E-60 425.1 13.2 277 37-326 23-354 (368)
39 3dyh_A Farnesyl pyrophosphate 100.0 2.7E-54 9.1E-59 421.7 20.8 277 40-328 27-390 (390)
40 2e8v_A Geranylgeranyl pyrophos 100.0 4.1E-54 1.4E-58 414.0 21.3 263 52-325 9-339 (340)
41 2ihi_A Pyrophosphate synthase; 100.0 2.8E-54 9.6E-59 421.7 20.0 277 40-327 34-395 (395)
42 3mav_A Farnesyl pyrophosphate 100.0 2.3E-53 7.9E-58 416.4 24.0 274 41-329 35-393 (395)
43 1uby_A FPS, farnesyl diphospha 100.0 2.2E-53 7.4E-58 412.6 23.5 275 43-328 29-367 (367)
44 2q58_A Fragment, farnesyl pyro 100.0 2.7E-54 9.2E-59 419.2 11.6 284 34-327 20-359 (368)
45 4fp4_A Polyprenyl synthetase; 100.0 1.1E-50 3.7E-55 379.6 21.1 205 42-265 6-213 (285)
46 3vj8_A Squalene synthase; farn 95.2 1.4 4.7E-05 41.6 18.1 115 193-308 123-255 (343)
47 3acx_A Dehydrosqualene synthas 94.2 0.45 1.5E-05 43.8 11.9 110 193-308 113-241 (293)
48 4hd1_A Squalene synthase HPNC; 93.1 0.65 2.2E-05 42.8 10.9 110 192-308 108-236 (294)
49 3rmg_A Octaprenyl-diphosphate 77.9 9.6 0.00033 35.6 9.2 67 232-306 63-129 (334)
50 3mzv_A Decaprenyl diphosphate 76.6 7.9 0.00027 36.3 8.3 72 228-307 65-136 (341)
51 4fp4_A Polyprenyl synthetase; 75.5 11 0.00039 34.4 8.8 66 234-307 66-131 (285)
52 2q80_A Geranylgeranyl pyrophos 75.3 16 0.00055 33.5 9.9 68 232-307 41-108 (301)
53 3nf2_A Putative polyprenyl syn 74.7 6.8 0.00023 37.0 7.3 74 227-308 65-138 (352)
54 1wmw_A Geranylgeranyl diphosph 72.2 19 0.00064 33.4 9.6 70 229-306 52-121 (330)
55 3pko_A Geranylgeranyl pyrophos 72.0 21 0.00073 33.2 10.0 71 229-307 68-139 (334)
56 2e8v_A Geranylgeranyl pyrophos 69.8 21 0.0007 33.3 9.3 69 232-308 56-124 (340)
57 3aqb_B Component B of hexapren 68.1 13 0.00044 34.5 7.5 72 227-306 55-126 (325)
58 1v4e_A Octoprenyl-diphosphate 67.7 15 0.00053 33.6 7.9 65 234-306 59-123 (299)
59 1wy0_A Geranylgeranyl pyrophos 67.5 11 0.00038 35.2 6.9 70 230-307 60-129 (342)
60 3lmd_A Geranylgeranyl pyrophos 67.4 22 0.00076 33.5 9.0 73 227-307 85-158 (360)
61 4f62_A Geranyltranstransferase 67.2 32 0.0011 31.8 10.0 68 232-307 61-130 (317)
62 1rtr_A Geranyltranstransferase 67.2 9.7 0.00033 35.0 6.4 83 81-166 178-272 (301)
63 3lom_A Geranyltranstransferase 66.1 32 0.0011 31.7 9.7 72 228-307 62-135 (313)
64 2ftz_A Geranyltranstransferase 65.6 19 0.00066 32.7 8.0 68 232-307 62-131 (284)
65 3lsn_A Geranyltranstransferase 65.0 26 0.0009 32.2 8.9 71 229-307 57-129 (304)
66 3bny_A Aristolochene synthase; 64.9 79 0.0027 28.4 13.5 61 204-265 167-228 (320)
67 3m0g_A Farnesyl diphosphate sy 64.7 36 0.0012 31.1 9.7 72 228-307 53-126 (297)
68 3uca_A Geranyltranstransferase 64.6 12 0.00042 34.8 6.6 73 93-167 222-306 (324)
69 4dhd_A Polyprenyl synthetase; 64.0 14 0.00048 34.8 7.0 63 234-304 63-125 (358)
70 2azj_A Geranylgeranyl pyrophos 63.1 19 0.00066 32.8 7.5 69 230-306 63-132 (289)
71 2j1p_A Geranylgeranyl pyrophos 63.0 49 0.0017 30.0 10.3 69 231-307 67-137 (293)
72 1rqj_A Geranyltranstransferase 61.8 54 0.0018 29.8 10.4 70 229-306 57-128 (299)
73 2h8o_A Geranyltranstransferase 61.1 51 0.0017 30.7 10.1 70 229-306 98-169 (335)
74 3ts7_A Geranyltranstransferase 61.0 30 0.001 32.1 8.5 69 231-307 65-135 (324)
75 3pde_A Farnesyl-diphosphate sy 59.4 36 0.0012 31.4 8.7 61 239-307 73-135 (309)
76 3oyr_A Trans-isoprenyl diphosp 58.9 11 0.00036 35.5 5.0 71 228-306 77-147 (345)
77 3p8l_A Geranyltranstransferase 58.4 39 0.0013 30.9 8.8 62 237-306 72-135 (302)
78 3ipi_A Geranyltranstransferase 56.8 11 0.00039 34.5 4.7 65 234-306 60-124 (295)
79 3llw_A Geranyltranstransferase 53.1 21 0.00073 32.9 6.0 62 236-305 74-137 (311)
80 3kra_B Geranyl diphosphate syn 52.9 22 0.00076 32.1 6.0 72 229-308 53-125 (274)
81 2q58_A Fragment, farnesyl pyro 52.8 38 0.0013 31.9 7.8 55 244-306 103-157 (368)
82 3p8r_A Geranyltranstransferase 52.8 24 0.00083 32.3 6.3 73 227-307 61-135 (302)
83 3npk_A Geranyltranstransferase 48.6 88 0.003 28.4 9.4 64 235-306 59-124 (291)
84 3lk5_A Geranylgeranyl pyrophos 44.7 76 0.0026 30.0 8.6 64 235-306 87-166 (380)
85 3apz_A Geranyl diphosphate syn 43.0 67 0.0023 29.8 7.8 59 241-307 92-150 (348)
86 3kb9_A EPI-isozizaene synthase 42.4 2.1E+02 0.0073 26.5 15.7 59 204-263 207-268 (382)
87 1di1_A Aristolochene synthase; 39.6 2E+02 0.0067 25.3 14.4 99 204-304 153-261 (300)
88 3qkc_B Geranyl diphosphate syn 38.9 64 0.0022 29.0 6.7 71 228-307 57-127 (273)
89 4err_A Autotransporter adhesin 37.5 1.3E+02 0.0044 22.5 8.7 72 236-327 9-81 (90)
90 3v1v_A 2-MIB synthase, 2-methy 37.0 2.3E+02 0.0079 27.1 10.8 60 204-265 285-347 (433)
91 1ps1_A Pentalenene synthase; a 34.0 2.6E+02 0.0088 25.0 11.2 58 240-304 203-267 (337)
92 2ihi_A Pyrophosphate synthase; 32.9 1.6E+02 0.0054 27.9 8.7 57 242-306 111-169 (395)
93 3tc1_A Octaprenyl pyrophosphat 30.5 1.2E+02 0.004 27.9 7.2 59 240-306 61-119 (315)
94 3aqb_A Component A of hexapren 27.6 78 0.0027 25.7 4.6 38 113-166 53-90 (147)
95 2her_A Fragment, farnesyl pyro 27.2 93 0.0032 29.3 6.0 62 236-305 95-159 (368)
96 1yhl_A Farnesyl pyrophosphate 25.1 2.1E+02 0.0072 26.5 8.1 56 243-306 85-142 (362)
97 2qis_A Farnesyl pyrophosphate 24.5 1.8E+02 0.0061 27.2 7.4 56 242-305 110-166 (374)
98 3ls0_A SLL1638 protein, PSBQ; 21.9 64 0.0022 26.0 3.1 25 84-108 65-89 (133)
99 1uby_A FPS, farnesyl diphospha 21.2 2.6E+02 0.009 26.0 7.8 37 240-284 101-137 (367)
No 1
>4f62_A Geranyltranstransferase; enzyme function initiative, structural genomics; 2.10A {Marinomonas SP}
Probab=100.00 E-value=3.3e-66 Score=492.15 Aligned_cols=285 Identities=31% Similarity=0.504 Sum_probs=240.9
Q ss_pred hcHHHHHHHHHHHHHHHHHHhhccCC-chhHHHHHHHhhhcCCCCcchHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHH
Q 019903 40 FDLKTYWTTLITEIDQNLEKAITVKY-PEQIYESMRYSVLAKGTKRAPPVMCVAACELFGVNRIAAFPTACALEMVHAAS 118 (334)
Q Consensus 40 ~~~~~~~~~~~~~i~~~L~~~~~~~~-~~~l~~~~~y~~~~~gGKrlRp~l~ll~~~~~g~~~~~~~~lA~avEliH~as 118 (334)
|+|.+++....+.|++.|.+.++... |+.+.++++|.+.. ||||+||.|++++++++|++.+.+..+|++|||||++|
T Consensus 3 m~~~~~l~~~~~~ve~~L~~~l~~~~~~~~l~~a~~y~~~~-gGKrlRp~Lvl~~~~~~g~~~~~~~~~A~avEliH~aS 81 (317)
T 4f62_A 3 MNLKQFSTYTQSRVDQYLEQQLSDYAPANQLHNAMRYSLFN-GGKRIRPMLTYASAQLVGDISSLTDASAAALESIHAYS 81 (317)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHSCCCGGGHHHHHHHHHHHC--CCCCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHhC-CCcchHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Confidence 67889999999999999999997532 66899999999875 99999999999999999999999999999999999999
Q ss_pred HHHhCCCCCCCCCCCCCCCCCCCcCChHHHHHHHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHhhhhhhhHhh
Q 019903 119 LIHDDLPCMDDDPSRRGQPSNHTVYGVDIAILAGDALFPLGFQHIVSHTPPHLVPEPRVLRVIAEIARAVGSTGMAAGQF 198 (334)
Q Consensus 119 LIhDDIp~iD~s~~RRG~pt~h~~~G~~~Avl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~GQ~ 198 (334)
||||||||||+|++|||+||+|++||+++|||+||+|++.||+++++... .+.....+++..++++.|..+|+.||.
T Consensus 82 LIHDDip~mD~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~Af~~l~~~~~---~~~~~~~~~i~~la~a~g~~~m~~GQ~ 158 (317)
T 4f62_A 82 LIHDDLPAMDNDELRRGKPTCHIQFDEATAILAGDALQTFAFELLSNPTS---AQPELAIKLIQELVVASGRNGMITGQM 158 (317)
T ss_dssp HHHHHSTTSCC-------CCHHHHSCHHHHHHHHHHHHHHHHHHHTCTTC---CCHHHHHHHHHHHHHHHSTTTHHHHHH
T ss_pred HHHCCcccccCCCCcCCCccHHhhcCHHHHHHHHHHHHHHHHHHHHhccC---CCHHHHHHHHHHHHHHHhhhhHHHhHH
Confidence 99999999999999999999999999999999999999999999987521 344566788888888877678999999
Q ss_pred hhccC-----ChhHHHHHHHhhHHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHhHHhhHhhhhcCCC----CC
Q 019903 199 LDLEG-----EPNLVEFVQEKKFGEMSECSAVCGGFLAG-ADDDEIQSLRRYGRAVGVLYQVVDDILEAKAQTP----RD 268 (334)
Q Consensus 199 lDl~~-----~~~~y~~i~~~KTa~Lf~~a~~lGa~lag-~~~~~~~~l~~~G~~lG~afQi~DD~lD~~~~~~----~~ 268 (334)
+|+.+ +.++|.+|+.+|||+||++||++|++++| ++++.++.+++||.++|+||||+||++|++++++ ..
T Consensus 159 lDl~~~~~~~t~~~y~~i~~~KTg~L~~~a~~~Ga~lag~a~~~~~~~l~~~g~~lGlAFQI~DDiLD~~gd~~~~GK~~ 238 (317)
T 4f62_A 159 IDLSSENKNISLAELEQMHVHKTGALIKASVRMGALSTGQVKPEQLAKLDAYAHAIGLAFQVQDDIIDLTSDTETLGKTQ 238 (317)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTC----------
T ss_pred HHHhccCCCCCHHHHHHHHHhchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChHhhCCCc
Confidence 99986 67899999999999999999999999999 8999999999999999999999999999998764 35
Q ss_pred chHHhhcCchHHHHhHHHHHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHhcccccc
Q 019903 269 EEKKKKKGKSYVAFYGVEKAMEVAEELRAKAKEELDRFKKYGDNVLPLYSFIDYAADREFSVV 331 (334)
Q Consensus 269 ~~Dl~~~k~t~~~~~gle~a~~~a~~~~~~A~~~L~~lp~~~~~~~~L~~l~~~~~~R~~~~~ 331 (334)
++|+.+||.|||.++|+++|++.+++|.++|+++|+.||+ .++.|.+|++|+++|++...
T Consensus 239 g~Dl~egK~T~p~l~gle~a~~~a~~~~~~A~~~L~~l~~---~~~~L~~l~~~~~~R~~~~~ 298 (317)
T 4f62_A 239 FSDAEANKATYPKLLGLDGAKALVVRLHEQAIAQISEFGD---KSQPLTDLANYIIDRNHAEN 298 (317)
T ss_dssp ------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHGGGGG---GGHHHHHHHHHHHC------
T ss_pred chHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCch---hHHHHHHHHHHHHHhcccch
Confidence 7999999999999999999999999999999999999986 57899999999999987653
No 2
>3ts7_A Geranyltranstransferase; isoprenoid synthesis, farnesyl diphosphate synthase; 1.94A {Methylococcus capsulatus}
Probab=100.00 E-value=1e-65 Score=490.12 Aligned_cols=288 Identities=31% Similarity=0.497 Sum_probs=254.7
Q ss_pred hhcHHHHHHHHHHHHHHHHHHhhccC--CchhHHHHHHHhhhcCCCCcchHHHHHHHHHHhCCCchhhHHHHHHHHHHHH
Q 019903 39 QFDLKTYWTTLITEIDQNLEKAITVK--YPEQIYESMRYSVLAKGTKRAPPVMCVAACELFGVNRIAAFPTACALEMVHA 116 (334)
Q Consensus 39 ~~~~~~~~~~~~~~i~~~L~~~~~~~--~~~~l~~~~~y~~~~~gGKrlRp~l~ll~~~~~g~~~~~~~~lA~avEliH~ 116 (334)
.++|..++....+.|++.|.+.++.. .++.+.++++|.+.. ||||+||+|++++++++|++.+.+..+|++|||||+
T Consensus 6 ~~~~~~~l~~~~~~ve~~L~~~l~~~~~~~~~l~~a~~y~~~~-gGKrlRP~L~l~~~~~~g~~~~~~~~~A~avEliH~ 84 (324)
T 3ts7_A 6 ERSLSDFMRSSQERVERALDARLPAADRMPERLHQAMRYSVLG-GGKRMRPLLTYATGQTIGVAADLLDGPACAVEFIHV 84 (324)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHTSCCTTSSSHHHHHHHHHHHHS-CCCCHHHHHHHHHHHHHTCCGGGTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccCCcHHHHHHHHHHHhC-CCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 36788999999999999999998753 367899999999875 999999999999999999999999999999999999
Q ss_pred HHHHHhCCCCCCCCCCCCCCCCCCCcCChHHHHHHHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHhhhhhhhH
Q 019903 117 ASLIHDDLPCMDDDPSRRGQPSNHTVYGVDIAILAGDALFPLGFQHIVSHTPPHLVPEPRVLRVIAEIARAVGSTGMAAG 196 (334)
Q Consensus 117 asLIhDDIp~iD~s~~RRG~pt~h~~~G~~~Avl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~G 196 (334)
+|||||||||||+|++|||+||+|++||+++|||+||+|++.||+++++.... ..+.....+++..++++.|..+|+.|
T Consensus 85 aSLIHDDip~mD~~~~RRG~pt~h~~~G~~~AIlaGD~L~~~Af~~l~~~~~~-~~~~~~~~~~i~~la~a~g~~~m~~G 163 (324)
T 3ts7_A 85 YSLIHDDLPAMDDDDLRRGKPTCHKAYDEATAILAGDGLQALAFHVLAQDPSI-AVPAENRIAMIETLAKASGPAGMVGG 163 (324)
T ss_dssp HHHHHHTSTTTTCCSEETTEECHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTS-CCCHHHHHHHHHHHHHHHSTTTHHHH
T ss_pred HHHhhcCcccccCCCccCCCCchhhhcChHHHHHHHHHHHHHHHHHHHhcccc-CCCHHHHHHHHHHHHHHHhhhHHHHh
Confidence 99999999999999999999999999999999999999999999999986311 13455567888888888777789999
Q ss_pred hhhhccC-----ChhHHHHHHHhhHHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHhHHhhHhhhhcCCCC---
Q 019903 197 QFLDLEG-----EPNLVEFVQEKKFGEMSECSAVCGGFLAG-ADDDEIQSLRRYGRAVGVLYQVVDDILEAKAQTPR--- 267 (334)
Q Consensus 197 Q~lDl~~-----~~~~y~~i~~~KTa~Lf~~a~~lGa~lag-~~~~~~~~l~~~G~~lG~afQi~DD~lD~~~~~~~--- 267 (334)
|.+|+.+ +.++|.+|+.+|||+||++||++|++++| ++++.++.+++||.++|+||||+||++|++++++.
T Consensus 164 Q~lDl~~~~~~~t~~~y~~i~~~KTg~L~~~a~~~Ga~lag~a~~~~~~~l~~~g~~lGlAFQI~DDiLD~~~d~~~~GK 243 (324)
T 3ts7_A 164 QAIDLASVGKKLDLPGLENMHIRKTGALIRASVRLACLARPGLPAEQFDRLDHYAKCIGLAFQIQDDILDEESDTQTLGK 243 (324)
T ss_dssp HHHHHHTTTCCCCHHHHHHHHHHHTHHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC------
T ss_pred HHHHHHccCCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHhCC
Confidence 9999986 67899999999999999999999999999 99999999999999999999999999999987643
Q ss_pred -CchHHhhcCchHHHHhHHHHHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHhcccccc
Q 019903 268 -DEEKKKKKGKSYVAFYGVEKAMEVAEELRAKAKEELDRFKKYGDNVLPLYSFIDYAADREFSVV 331 (334)
Q Consensus 268 -~~~Dl~~~k~t~~~~~gle~a~~~a~~~~~~A~~~L~~lp~~~~~~~~L~~l~~~~~~R~~~~~ 331 (334)
.++|+.+||.|||.++|+++|++.++++.++|+++|+.||+ .++.|.+|++|+++|++..+
T Consensus 244 ~~g~Dl~egK~T~p~l~gle~a~~~a~~~~~~A~~~L~~l~~---~~~~L~~la~~~~~R~~~~~ 305 (324)
T 3ts7_A 244 TRGKDRDHNKPNYPALLGLSGAKEKAEEMHEAALESLAGFGP---EADLLRELARFIIQRQSAEN 305 (324)
T ss_dssp ---------CCCHHHHHCHHHHHHHHHHHHHHHHHTTTTCCG---GGHHHHHHHHHHHHTSSSST
T ss_pred CccchhhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc---cHHHHHHHHHHHHhccCccc
Confidence 57899999999999999999999999999999999999987 37899999999999987654
No 3
>3lsn_A Geranyltranstransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; HET: MSE; 1.35A {Pseudomonas fluorescens} PDB: 3lji_A* 3p41_A*
Probab=100.00 E-value=1.8e-65 Score=485.20 Aligned_cols=284 Identities=35% Similarity=0.603 Sum_probs=247.9
Q ss_pred hcHHHHHHHHHHHHHHHHHHhhccCC--chhHHHHHHHhhhcCCCCcchHHHHHHHHHHhCCCchhhHHHHHHHHHHHHH
Q 019903 40 FDLKTYWTTLITEIDQNLEKAITVKY--PEQIYESMRYSVLAKGTKRAPPVMCVAACELFGVNRIAAFPTACALEMVHAA 117 (334)
Q Consensus 40 ~~~~~~~~~~~~~i~~~L~~~~~~~~--~~~l~~~~~y~~~~~gGKrlRp~l~ll~~~~~g~~~~~~~~lA~avEliH~a 117 (334)
|+|..++....+.|++.|.+.++... |+.+.++++|.+.. ||||+||.|++++++++|++++.+.++|++|||||++
T Consensus 1 m~~~~~~~~~~~~ve~~l~~~~~~~~~~~~~l~~~~~y~~~~-gGKrlRp~L~l~~~~~~g~~~~~~~~~A~aiEliH~a 79 (304)
T 3lsn_A 1 MSLTAYQASSQARVDAAMHTLFTAPSPELARLYEAMRYSVMN-GGKRVRPLLAYAACEALGGKPEQANGAACAVELIHAY 79 (304)
T ss_dssp -CHHHHHHHHHHHHHHHHHGGGCCSSGGGHHHHHHHHHHHTT-TCCCHHHHHHHHHHHHTTCCGGGGHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHhhhccCCcHHHHHHHHHHHhC-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 57888999999999999999998653 56899999999875 9999999999999999999999999999999999999
Q ss_pred HHHHhCCCCCCCCCCCCCCCCCCCcCChHHHHHHHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHhhhhhhhHh
Q 019903 118 SLIHDDLPCMDDDPSRRGQPSNHTVYGVDIAILAGDALFPLGFQHIVSHTPPHLVPEPRVLRVIAEIARAVGSTGMAAGQ 197 (334)
Q Consensus 118 sLIhDDIp~iD~s~~RRG~pt~h~~~G~~~Avl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~GQ 197 (334)
|||||||||||+|++|||+||+|++||+++|||+||+|++.||+.+++.... ..+.....+++..+++++|..+|+.||
T Consensus 80 sLIHDDip~mD~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~a~~~l~~~~~~-~~~~~~~~~~~~~l~~a~~~~~~~~GQ 158 (304)
T 3lsn_A 80 SLVHDDLPAMDDDDLRRGQPTTHKAFDEACAILAGDGLQSLAFSALLDPALS-DASAEIRLRMVTTLAQAAGPAGMVGGQ 158 (304)
T ss_dssp HHHHHTSTTTTCCSEETTEECHHHHSCHHHHHHHHHHHHHHHHHHHHCTTSC-CCCHHHHHHHHHHHHHHHSTTTHHHHH
T ss_pred HHHHCCcccccCCCccCCCCchHhhcCHHHHHHHHHHHHHHHHHHHHHhccc-CCChHHHHHHHHHHHHHHchhhHhHhH
Confidence 9999999999999999999999999999999999999999999999876421 134555678888888887766799999
Q ss_pred hhhccC-----ChhHHHHHHHhhHHHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHHhHHhhHhhhhcCC----CC
Q 019903 198 FLDLEG-----EPNLVEFVQEKKFGEMSECSAVCGGFLAGA-DDDEIQSLRRYGRAVGVLYQVVDDILEAKAQT----PR 267 (334)
Q Consensus 198 ~lDl~~-----~~~~y~~i~~~KTa~Lf~~a~~lGa~lag~-~~~~~~~l~~~G~~lG~afQi~DD~lD~~~~~----~~ 267 (334)
.+|+.+ +.++|.+|+.+|||+||++||++|++++|+ +++.++.+++||.++|+||||+||++|+++++ +.
T Consensus 159 ~lDl~~~~~~~s~~~y~~i~~~KTg~L~~~~~~~ga~lag~~~~~~~~~l~~~g~~lGlaFQI~DDilD~~~~~~~~GK~ 238 (304)
T 3lsn_A 159 AIDLGSVGLKLDQQALEYMHRHKTGALIEASVILGALASGRAEKGELKALQTYAQAIGLAFQVQDDILDVESDTATLGKR 238 (304)
T ss_dssp HHHHHTTTCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHccCCCCCHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChHHhCCC
Confidence 999986 678999999999999999999999999999 88899999999999999999999999999864 44
Q ss_pred CchHHhhcCchHHHHhHHHHHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHhccc
Q 019903 268 DEEKKKKKGKSYVAFYGVEKAMEVAEELRAKAKEELDRFKKYGDNVLPLYSFIDYAADREF 328 (334)
Q Consensus 268 ~~~Dl~~~k~t~~~~~gle~a~~~a~~~~~~A~~~L~~lp~~~~~~~~L~~l~~~~~~R~~ 328 (334)
.++|+.+||.|||.++|+++|++.++++.++|+++|+.||+ .++.|.+|++|+++|.+
T Consensus 239 ~g~Dl~egK~T~p~l~~l~~a~~~a~~~~~~A~~~L~~l~~---~~~~L~~l~~~~~~R~~ 296 (304)
T 3lsn_A 239 QGADIARDKPTYPALLGLAAAKEYALELRDQALHALRPFDA---AAEPLRELARYIVERRS 296 (304)
T ss_dssp ---------CCHHHHHCHHHHHHHHHHHHHHHHHHTTTSCG---GGHHHHHHHHHHHC---
T ss_pred cccHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCch---hHHHHHHHHHHHHHhcc
Confidence 67999999999999999999999999999999999999986 57899999999999975
No 4
>1rqj_A Geranyltranstransferase; bisphosphonate, isoprenyl synthase; HET: IPR RIS; 1.95A {Escherichia coli} SCOP: a.128.1.1 PDB: 1rqi_A* 2for_A*
Probab=100.00 E-value=4.6e-65 Score=482.28 Aligned_cols=287 Identities=32% Similarity=0.499 Sum_probs=260.4
Q ss_pred hcHHHHHHHHHHHHHHHHHHhhccC--CchhHHHHHHHhhhcCCCCcchHHHHHHHHHHhCCCchhhHHHHHHHHHHHHH
Q 019903 40 FDLKTYWTTLITEIDQNLEKAITVK--YPEQIYESMRYSVLAKGTKRAPPVMCVAACELFGVNRIAAFPTACALEMVHAA 117 (334)
Q Consensus 40 ~~~~~~~~~~~~~i~~~L~~~~~~~--~~~~l~~~~~y~~~~~gGKrlRp~l~ll~~~~~g~~~~~~~~lA~avEliH~a 117 (334)
|+|.++++...+.|++.|++.++.. .++.+.++++|.+.. ||||+||.|++++++++|++++.++.+|++|||||++
T Consensus 1 m~~~~~l~~~~~~v~~~l~~~l~~~~~~~~~l~~~~~y~~~~-gGKrlRp~l~l~~~~~~g~~~~~~~~~A~avEliH~a 79 (299)
T 1rqj_A 1 MDFPQQLEACVKQANQALSRFIAPLPFQNTPVVETMQYGALL-GGKRLRPFLVYATGHMFGVSTNTLDAPAAAVECIHAY 79 (299)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHTTSSSTTSHHHHHHHHHHHS-SCCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHhhhccCCcHHHHHHHHHHHhC-CCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHh
Confidence 4678888988999999999998754 256799999999875 9999999999999999999988999999999999999
Q ss_pred HHHHhCCCCCCCCCCCCCCCCCCCcCChHHHHHHHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHhhhhhhhHh
Q 019903 118 SLIHDDLPCMDDDPSRRGQPSNHTVYGVDIAILAGDALFPLGFQHIVSHTPPHLVPEPRVLRVIAEIARAVGSTGMAAGQ 197 (334)
Q Consensus 118 sLIhDDIp~iD~s~~RRG~pt~h~~~G~~~Avl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~GQ 197 (334)
|||||||||||+|++|||+||+|++||+++|||+||+|++.||+++++.... ..+.....+++..++++.|..+|+.||
T Consensus 80 sLiHDDiP~~D~s~~RRG~pt~h~~~G~~~Ail~GD~L~~~a~~~l~~~~~~-~~~~~~~~~~~~~l~~~~g~~~~~~GQ 158 (299)
T 1rqj_A 80 SLIHDDLPAMDDDDLRRGLPTCHVKFGEANAILAGDALQTLAFSILSDADMP-EVSDRDRISMISELASASGIAGMCGGQ 158 (299)
T ss_dssp HHHHHTSTTTTCCCEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHHSCCT-TCCHHHHHHHHHHHHHHHSTTTHHHHH
T ss_pred HHHhCCChhhcCCCCCCCCCChhhhcChHHHHHHHHHHHHHHHHHHHHhhcc-cCChHHHHHHHHHHHHHhhhhHHHHhH
Confidence 9999999999999999999999999999999999999999999999985211 145556778888888887767899999
Q ss_pred hhhccC-----ChhHHHHHHHhhHHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHHHHhHHhhHhhhhcCC----CC
Q 019903 198 FLDLEG-----EPNLVEFVQEKKFGEMSECSAVCGGFL-AGADDDEIQSLRRYGRAVGVLYQVVDDILEAKAQT----PR 267 (334)
Q Consensus 198 ~lDl~~-----~~~~y~~i~~~KTa~Lf~~a~~lGa~l-ag~~~~~~~~l~~~G~~lG~afQi~DD~lD~~~~~----~~ 267 (334)
.+|+.+ +.++|.+|+.+|||+||++||++|+++ +|++++.++.+++||.++|+||||+||++|+++++ +.
T Consensus 159 ~~dl~~~~~~~~~~~y~~i~~~KTa~L~~~~~~~ga~l~ag~~~~~~~~l~~~g~~lG~aFQi~DD~lD~~~~~~~~GK~ 238 (299)
T 1rqj_A 159 ALDLDAEGKHVPLDALERIHRHKTGALIRAAVRLGALSAGDKGRRALPVLDKYAESIGLAFQVQDDILDVVGDTATLGKR 238 (299)
T ss_dssp HHHHHTTTTCCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHSSC
T ss_pred HHHHhccCCCCCHHHHHHHHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHhCCC
Confidence 999976 678899999999999999999999999 99999999999999999999999999999999874 45
Q ss_pred CchHHhhcCchHHHHhHHHHHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHhccc
Q 019903 268 DEEKKKKKGKSYVAFYGVEKAMEVAEELRAKAKEELDRFKKYGDNVLPLYSFIDYAADREF 328 (334)
Q Consensus 268 ~~~Dl~~~k~t~~~~~gle~a~~~a~~~~~~A~~~L~~lp~~~~~~~~L~~l~~~~~~R~~ 328 (334)
.++|+.+||.|||.+++++++++.+++|.++|++.|+.+|.+++.++.|.+|++|+++|.+
T Consensus 239 ~g~Dl~~gK~T~p~l~~l~~a~~~~~~~~~~A~~~L~~l~~~~~~~~~L~~l~~~~~~R~~ 299 (299)
T 1rqj_A 239 QGADQQLGKSTYPALLGLEQARKKARDLIDDARQSLKQLAEQSLDTSALEALADYIIQRNK 299 (299)
T ss_dssp TTHHHHHTCCCHHHHHCHHHHHHHHHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHCCC
T ss_pred hhhHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhccC
Confidence 7899999999999999999999999999999999999998744578999999999999964
No 5
>2h8o_A Geranyltranstransferase; geranyltransferase,agrobacterium tumefaciens, structural GEN PSI-2, protein structure initiative; 1.60A {Agrobacterium tumefaciens}
Probab=100.00 E-value=3.7e-65 Score=488.79 Aligned_cols=283 Identities=32% Similarity=0.493 Sum_probs=246.2
Q ss_pred hcHHHHHHHHHHHHHHHHHHhhccC-------CchhHHHHHHHhhhcCCCCcchHHHHHHHHHHhCCCchhhHHHHHHHH
Q 019903 40 FDLKTYWTTLITEIDQNLEKAITVK-------YPEQIYESMRYSVLAKGTKRAPPVMCVAACELFGVNRIAAFPTACALE 112 (334)
Q Consensus 40 ~~~~~~~~~~~~~i~~~L~~~~~~~-------~~~~l~~~~~y~~~~~gGKrlRp~l~ll~~~~~g~~~~~~~~lA~avE 112 (334)
.++..+++...+.|++.|++.++.. .++.+.++++|.+.. ||||+||.|++++++++|++++.++.+|++||
T Consensus 37 ~~~~~~l~~~~~~ve~~L~~~l~~~~~~~~~~~~~~l~~~~~y~~~~-gGKrlRP~L~l~~~~~~g~~~~~~~~~A~aiE 115 (335)
T 2h8o_A 37 TNFETRLRENAAKTEALLGHLLSGEARADEITRPQNLLEAMRHGVLN-GGKRLRPFLVIESVALLGGDAEAGLHVGAALE 115 (335)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCSSCCTTCCCCCHHHHHHHHHHHHT-SCSCHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccccccCCcHHHHHHHHHHHhC-CCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 4577888888999999999998652 456799999999875 99999999999999999998888999999999
Q ss_pred HHHHHHHHHhCCCCCCCCCCCCCCCCCCCcCChHHHHHHHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHhhhh
Q 019903 113 MVHAASLIHDDLPCMDDDPSRRGQPSNHTVYGVDIAILAGDALFPLGFQHIVSHTPPHLVPEPRVLRVIAEIARAVGSTG 192 (334)
Q Consensus 113 liH~asLIhDDIp~iD~s~~RRG~pt~h~~~G~~~Avl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 192 (334)
|||++|||||||||||+|++|||+||+|++||+++|||+||+|++.||+++++.... ++.+...+++..++++.|..+
T Consensus 116 liH~asLIHDDiPamD~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~A~~~l~~~~~~--~~~~~~~~~~~~ls~a~g~~~ 193 (335)
T 2h8o_A 116 CLHCYSLVHDDLPAMDDDDLRRGQPTVHRKFDEATAILAGDSLLTLAFDIIASDDNP--LAAERKAALVISLARAAGIGG 193 (335)
T ss_dssp HHHHHHHHHHTSTTTTCCSEETTEECHHHHSCHHHHHHHHHHHHHHHHHHHHSTTSC--SCHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHCCchhccCCCcCCCCCcHhhhcChHHHHHHHHHHHHHHHHHHHHhccc--CCchHHHHHHHHHHHHhhhhH
Confidence 999999999999999999999999999999999999999999999999999885211 345567788888888887778
Q ss_pred hhhHhhhhccC-----ChhHHHHHHHhhHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHhhHhhhhcCCCC
Q 019903 193 MAAGQFLDLEG-----EPNLVEFVQEKKFGEMSECSAVCGGFLAGADDDEIQSLRRYGRAVGVLYQVVDDILEAKAQTPR 267 (334)
Q Consensus 193 ~~~GQ~lDl~~-----~~~~y~~i~~~KTa~Lf~~a~~lGa~lag~~~~~~~~l~~~G~~lG~afQi~DD~lD~~~~~~~ 267 (334)
|+.||.+|+.+ +.++|.+|+.+|||+||++||++|++++|++++.++.+++||.++|+||||+||++|++++++.
T Consensus 194 ~~~GQ~lDl~~~~~~~~~~~y~~i~~~KTa~L~~~a~~~Ga~laga~~~~~~~l~~~g~~lGlAFQI~DDiLD~~gd~~~ 273 (335)
T 2h8o_A 194 MAGGQALDLAAEKKAPDEDGIITLQAMKTGALLRFACEAGAIIAGSNQAERQRLRLFGEKIGLSFQLADDLLDLTADAAT 273 (335)
T ss_dssp HHHHHHHHHHHHHSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHccCCCCCHHHHHHHHHhchHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH
Confidence 99999999975 6789999999999999999999999999999999999999999999999999999999987643
Q ss_pred ----CchHHhhcCchHHHHhHHHHHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHhccc
Q 019903 268 ----DEEKKKKKGKSYVAFYGVEKAMEVAEELRAKAKEELDRFKKYGDNVLPLYSFIDYAADREF 328 (334)
Q Consensus 268 ----~~~Dl~~~k~t~~~~~gle~a~~~a~~~~~~A~~~L~~lp~~~~~~~~L~~l~~~~~~R~~ 328 (334)
.++|+.+||.|||.++|++++++.+++|.++|+++|+.||. .++.|.+|++|+++|.+
T Consensus 274 ~GK~~g~Dl~egK~T~p~l~~le~a~~~a~~~~~~A~~~L~~l~~---~~~~L~~l~~~i~~R~~ 335 (335)
T 2h8o_A 274 MGKATGKDAARGKGTLVALRGEAWAREKLQEQVAEASELLAPYGE---KAAILIAAARFIAERKS 335 (335)
T ss_dssp ------------CCCHHHHHCHHHHHHHHHHHHHHHHHHTGGGGG---GGHHHHHHHHHHHC---
T ss_pred hCCCcchHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCch---hHHHHHHHHHHHHhccC
Confidence 57899999999999999999999999999999999999985 67899999999999963
No 6
>3p8l_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.00A {Enterococcus faecalis}
Probab=100.00 E-value=6.7e-65 Score=480.72 Aligned_cols=280 Identities=30% Similarity=0.472 Sum_probs=244.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhccC-CchhHHHHHHHhhhcCCCCcchHHHHHHHHHHhCCCch-hhHHHHHHHHHHHHHHH
Q 019903 42 LKTYWTTLITEIDQNLEKAITVK-YPEQIYESMRYSVLAKGTKRAPPVMCVAACELFGVNRI-AAFPTACALEMVHAASL 119 (334)
Q Consensus 42 ~~~~~~~~~~~i~~~L~~~~~~~-~~~~l~~~~~y~~~~~gGKrlRp~l~ll~~~~~g~~~~-~~~~lA~avEliH~asL 119 (334)
+..|-+...+.|++.|.+.++.. .++.+.++++|.+.. ||||+||.|++++++++|++.+ .++++|++|||||++||
T Consensus 10 ~~~~~~~~~~~ve~~l~~~l~~~~~~~~l~~~~~y~~~~-gGKrlRp~L~l~~~~~~g~~~~~~~~~~A~avEliH~asL 88 (302)
T 3p8l_A 10 LTNFSQQHLPLVEKVMVDFIAEYTENERLKEAMLYSIHA-GGKRLRPLLVLTTVAAFQKEMETQDYQVAASLEMIHTYSL 88 (302)
T ss_dssp STTHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHT-CCCCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHHHhhccCCcHHHHHHHHHHHhC-CCCcHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHH
Confidence 44566777899999999988753 467899999999875 9999999999999999999887 89999999999999999
Q ss_pred HHhCCCCCCCCCCCCCCCCCCCcCChHHHHHHHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHhhhhhhhHhhh
Q 019903 120 IHDDLPCMDDDPSRRGQPSNHTVYGVDIAILAGDALFPLGFQHIVSHTPPHLVPEPRVLRVIAEIARAVGSTGMAAGQFL 199 (334)
Q Consensus 120 IhDDIp~iD~s~~RRG~pt~h~~~G~~~Avl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~GQ~l 199 (334)
|||||||||+|++|||+||+|++||+++|||+||+|++.||+.+++.. .+.....+++..++++.|..+|+.||.+
T Consensus 89 IHDDIP~mD~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~A~~~l~~~~----~~~~~~~~~~~~l~~a~g~~~~~~GQ~l 164 (302)
T 3p8l_A 89 IHDDLPAMDDDDLRRGKPTNHKVFGEATAILAGDGLLTGAFQLLSLSQ----LGLSEKVLLMQQLAKAAGNQGMVSGQMG 164 (302)
T ss_dssp HHHHSTTTTCCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHTSS----CCHHHHHHHHHHHHHHHSTTTHHHHHHH
T ss_pred HHCCchhccCCCccCCCcchhhhcChHHHHHHHHHHHHHHHHHHHhcC----CChHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 999999999999999999999999999999999999999999998753 4455667888888888776789999999
Q ss_pred hccC-----ChhHHHHHHHhhHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHhhHhhhhcCCCC----Cch
Q 019903 200 DLEG-----EPNLVEFVQEKKFGEMSECSAVCGGFLAGADDDEIQSLRRYGRAVGVLYQVVDDILEAKAQTPR----DEE 270 (334)
Q Consensus 200 Dl~~-----~~~~y~~i~~~KTa~Lf~~a~~lGa~lag~~~~~~~~l~~~G~~lG~afQi~DD~lD~~~~~~~----~~~ 270 (334)
|+.+ +.++|.+|+.+|||+||++||++|++++|++++.++.+++||.++|+||||+||++|++++++. .++
T Consensus 165 Dl~~~~~~~t~~~y~~i~~~KTg~L~~~~~~~ga~laga~~~~~~~l~~~g~~lGlaFQI~DDilD~~~d~~~~GK~~g~ 244 (302)
T 3p8l_A 165 DIEGEKVSLTLEELAAVHEKKTGALIEFALIAGGVLANQTEEVIGLLTQFAHHYGLAFQIRDDLLDATSTEADLGKKVGR 244 (302)
T ss_dssp HHHTTTSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-----------
T ss_pred HHHccCCCCCHHHHHHHHHcCcHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHhCCChhh
Confidence 9876 6789999999999999999999999999999999999999999999999999999999987643 578
Q ss_pred HHhhcCchHHHHhHHHHHHHHHHHHHHHHHHHHhhccC--CCCChHHHHHHHHHHHhc
Q 019903 271 KKKKKGKSYVAFYGVEKAMEVAEELRAKAKEELDRFKK--YGDNVLPLYSFIDYAADR 326 (334)
Q Consensus 271 Dl~~~k~t~~~~~gle~a~~~a~~~~~~A~~~L~~lp~--~~~~~~~L~~l~~~~~~R 326 (334)
|+.+||.|||.++|++++++.++++.++|+++|+.||+ .++.++.|.+|++|+++|
T Consensus 245 Dl~egK~T~p~l~~l~~a~~~~~~~~~~A~~~L~~~~~~~~~~~~~~L~~l~~~~~~R 302 (302)
T 3p8l_A 245 DEALNKSTYPALLGIAGAKDALTHQLAEGSAVLEKIKANVPNFSEEHLANLLTQLQLR 302 (302)
T ss_dssp ------CCHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHHTSCC
T ss_pred HHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCChhHHHHHHHHHHHhhC
Confidence 99999999999999999999999999999999999973 246789999999999887
No 7
>3lom_A Geranyltranstransferase; geranyltransferase, structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Legionella pneumophila subsp}
Probab=100.00 E-value=1e-64 Score=481.55 Aligned_cols=281 Identities=26% Similarity=0.384 Sum_probs=248.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhccC--CchhHHHHHHHhhhcCCCCcchHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHH
Q 019903 42 LKTYWTTLITEIDQNLEKAITVK--YPEQIYESMRYSVLAKGTKRAPPVMCVAACELFGVNRIAAFPTACALEMVHAASL 119 (334)
Q Consensus 42 ~~~~~~~~~~~i~~~L~~~~~~~--~~~~l~~~~~y~~~~~gGKrlRp~l~ll~~~~~g~~~~~~~~lA~avEliH~asL 119 (334)
+.++++...+.|++.|.+.++.. .|+.+.++++|.+.. ||||+||.|++++++++|++.+.+.++|++|||||++||
T Consensus 9 ~~~~l~~~~~~ve~~L~~~l~~~~~~~~~l~~~~~y~~~~-gGKrlRp~L~l~~~~~~g~~~~~~~~~A~aiEliH~aSL 87 (313)
T 3lom_A 9 NKQVIDKYTQRHELYLEQLLNEIIIPAPQIRSALHYALFS-GGKRIRPILVYLAGDLIDVDQGVLDIIAAALELTHCYSL 87 (313)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHCC-SSCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHhC-CCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHH
Confidence 88899999999999999999864 367899999999875 999999999999999999999999999999999999999
Q ss_pred HHhCCCCCCCCCCCCCCCCCCCcCChHHHHHHHHHHHHHHHHHHHhcCCCCCCCh-HHHHHHHHHHHHHHhhhhhhhHhh
Q 019903 120 IHDDLPCMDDDPSRRGQPSNHTVYGVDIAILAGDALFPLGFQHIVSHTPPHLVPE-PRVLRVIAEIARAVGSTGMAAGQF 198 (334)
Q Consensus 120 IhDDIp~iD~s~~RRG~pt~h~~~G~~~Avl~GD~L~~~a~~~l~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~GQ~ 198 (334)
|||||||||+|++|||+||+|++||+++|||+||+|++.||+++++.... .+. ....+++..++++.|..+|+.||.
T Consensus 88 IHDDip~mD~~~~RRG~pt~h~~~G~~~AIlaGD~Ll~~a~~~l~~~~~~--~~~~~~~~~~i~~la~a~g~~~m~~GQ~ 165 (313)
T 3lom_A 88 IHDDLPAMDNDDLRRGKPSCHKAFDEATAILVGDGMQALAIEVLLMRLSP--LLPAAQVVAITQVLVNASGISGMVSGQS 165 (313)
T ss_dssp HHHHSTTTTCCSEETTEECHHHHSCHHHHHHHHHHHHHHHHHHHHHHHTT--TSCHHHHHHHHHHHHHHHSTTTHHHHHH
T ss_pred HhCCcccccCCCccCCCCCchhhcChHHHHHHHHHHHHHHHHHHHHhccC--CCcHHHHHHHHHHHHHHHhHhHHHHhHH
Confidence 99999999999999999999999999999999999999999999886311 223 456788888888877678999999
Q ss_pred hhccC------ChhHHHHHHHhhHHHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHHHhHHhhHhhhhcCCC----
Q 019903 199 LDLEG------EPNLVEFVQEKKFGEMSECSAVCGGFLAG--ADDDEIQSLRRYGRAVGVLYQVVDDILEAKAQTP---- 266 (334)
Q Consensus 199 lDl~~------~~~~y~~i~~~KTa~Lf~~a~~lGa~lag--~~~~~~~~l~~~G~~lG~afQi~DD~lD~~~~~~---- 266 (334)
+|+.+ +.++|.+|+.+|||+||++||++ ++++| ++++.++.+++||.++|+||||+||++|++++++
T Consensus 166 lDl~~~~~~~~t~~~y~~i~~~KTg~L~~~a~~~-a~lag~~a~~~~~~~l~~~g~~lGlaFQI~DDilD~~gd~~~~GK 244 (313)
T 3lom_A 166 LDLSELAKSSVTEEQLREIHLLKTGKLILACFEM-VLAAQHEVSEQIKSALRTYGKHIGLVFQMQDDYLDLYAPTQILGK 244 (313)
T ss_dssp HHHHTTTSSCCCHHHHHHHHHHHTHHHHHHHHHH-HHTTCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC------
T ss_pred HHHHccCCCCCCHHHHHHHHHcCcHHHHHHHHHH-HHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHhhCC
Confidence 99876 56899999999999999999999 99999 8999999999999999999999999999998864
Q ss_pred CCchHHhhcCchHHHHhHHHHHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHhcccc
Q 019903 267 RDEEKKKKKGKSYVAFYGVEKAMEVAEELRAKAKEELDRFKKYGDNVLPLYSFIDYAADREFS 329 (334)
Q Consensus 267 ~~~~Dl~~~k~t~~~~~gle~a~~~a~~~~~~A~~~L~~lp~~~~~~~~L~~l~~~~~~R~~~ 329 (334)
..++|+.+||.|||.++|+++|++.++++.++|+++|+.||+ .++.|.+|++|+++|.+.
T Consensus 245 ~~g~Dl~~gK~T~p~l~~l~~a~~~a~~~~~~A~~~L~~l~~---~~~~L~~la~~~~~R~~~ 304 (313)
T 3lom_A 245 GRSSDQANQKTTFATLFNKQQLEEEIAVHYQIAMDSLRLFGS---KAAALIELTKQLQNRSNL 304 (313)
T ss_dssp ---------CCCHHHHSCHHHHHHHHHHHHHHHHHTTTTTGG---GGHHHHHHHHHHHHHHHT
T ss_pred CCcchhhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc---cHHHHHHHHHHHHhcccc
Confidence 357899999999999999999999999999999999999986 378999999999999753
No 8
>3uca_A Geranyltranstransferase; isoprenoid synthesis, isoprenoid diphosphate synthase; 2.00A {Clostridium perfringens}
Probab=100.00 E-value=1.2e-64 Score=482.69 Aligned_cols=277 Identities=32% Similarity=0.569 Sum_probs=240.9
Q ss_pred HHHHHHHHHHHHHHHHhhccC--CchhHHHHHHHhhhcCCCCcchHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHH
Q 019903 44 TYWTTLITEIDQNLEKAITVK--YPEQIYESMRYSVLAKGTKRAPPVMCVAACELFGVNRIAAFPTACALEMVHAASLIH 121 (334)
Q Consensus 44 ~~~~~~~~~i~~~L~~~~~~~--~~~~l~~~~~y~~~~~gGKrlRp~l~ll~~~~~g~~~~~~~~lA~avEliH~asLIh 121 (334)
..++..++.|++.|.+.++.. .++.+.++++|.+.. ||||+||.|++++++++|++.+.++++|++|||||+|||||
T Consensus 35 ~~l~~~~~~ve~~l~~~l~~~~~~~~~l~~~~~y~~~~-gGKrlRp~L~l~~~~~~g~~~~~~~~~A~aiEliH~aSLIH 113 (324)
T 3uca_A 35 MNINSLKEEVDQSLKAYFNKDREYNKVLYDSMAYSINV-GGKRIRPILMLLSYYIYKSDYKKILTPAMAIEMIHTYSLIH 113 (324)
T ss_dssp CCHHHHHHHHHHHHHHHHCCCCSSCHHHHHHHHHHHHH-CCCCHHHHHHHHHHHTTCSCGGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhccCCcHHHHHHHHHHHhC-CCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 456677889999999998853 366899999999875 99999999999999999999999999999999999999999
Q ss_pred hCCCCCCCCCCCCCCCCCCCcCChHHHHHHHHHHHHHHHHHHHhcCCCCCCChHHH-HHHHHHHHHHHhhhhhhhHhhhh
Q 019903 122 DDLPCMDDDPSRRGQPSNHTVYGVDIAILAGDALFPLGFQHIVSHTPPHLVPEPRV-LRVIAEIARAVGSTGMAAGQFLD 200 (334)
Q Consensus 122 DDIp~iD~s~~RRG~pt~h~~~G~~~Avl~GD~L~~~a~~~l~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~GQ~lD 200 (334)
|||||||+|++|||+||+|++||+++|||+||+|++.||+.+++.. .+.... .+++..++++.|..+|+.||.+|
T Consensus 114 DDIP~mD~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~A~~~l~~~~----~~~~~~~~~~i~~la~a~g~~~m~~GQ~lD 189 (324)
T 3uca_A 114 DDLPCMDNDDLRRGKPTNHKVFGEAIAVLAGDALLNEAMKILVDYS----LEEGKSALKATKIIADAAGSDGMIGGQIVD 189 (324)
T ss_dssp HTSTTTTCCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHHHH----HHHCHHHHHHHHHHHHHHSTTTHHHHHHHH
T ss_pred CCchhccCCCCCCCCccHHHhcChHHHHHHHHHHHHHHHHHHHhcC----CChhhHHHHHHHHHHHHHhHhHHHHhHHHH
Confidence 9999999999999999999999999999999999999999998742 122233 67777888777767899999999
Q ss_pred ccC------ChhHHHHHHHhhHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHhhHhhhhcCCCC----Cch
Q 019903 201 LEG------EPNLVEFVQEKKFGEMSECSAVCGGFLAGADDDEIQSLRRYGRAVGVLYQVVDDILEAKAQTPR----DEE 270 (334)
Q Consensus 201 l~~------~~~~y~~i~~~KTa~Lf~~a~~lGa~lag~~~~~~~~l~~~G~~lG~afQi~DD~lD~~~~~~~----~~~ 270 (334)
+.+ +.++|.+|+++|||+||++||++|++++|++++.++.+++||.++|+||||+||++|++++++. .++
T Consensus 190 l~~~~~~~~t~~~y~~i~~~KTa~L~~~a~~~Ga~laga~~~~~~~l~~~g~~lGlAFQI~DDiLD~~gd~~~~GK~~g~ 269 (324)
T 3uca_A 190 IINEDKEEISLKELDYMHLKKTGELIKASIMSGAVLAEASEGDIKKLEGFGYKLGLAFQIKDDILDVVGNAKDLGKNVHK 269 (324)
T ss_dssp HHTSSCSSCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC----------
T ss_pred HHcCCCCCCCHHHHHHHHhcchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHhCCCcch
Confidence 876 5689999999999999999999999999999999999999999999999999999999987643 578
Q ss_pred HHhhcCchHHHHhHHHHHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHhccc
Q 019903 271 KKKKKGKSYVAFYGVEKAMEVAEELRAKAKEELDRFKKYGDNVLPLYSFIDYAADREF 328 (334)
Q Consensus 271 Dl~~~k~t~~~~~gle~a~~~a~~~~~~A~~~L~~lp~~~~~~~~L~~l~~~~~~R~~ 328 (334)
|+.+||.|||.++|+++|++.++++.++|++.|+.||. .++.|.++++|+++|++
T Consensus 270 Dl~egK~T~p~l~al~~a~~~a~~~~~~A~~~L~~l~~---~~~~L~~la~~i~~R~~ 324 (324)
T 3uca_A 270 DQESNKNNYITIFGLEECKKKCVNITEECIEILSSIKG---NTEPLKVLTMKLLERKF 324 (324)
T ss_dssp -------CHHHHHCHHHHHHHHHHHHHHHHHHHHTSSS---CCHHHHHHHHHHHHCCC
T ss_pred HhhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC---cHHHHHHHHHHHHhccC
Confidence 99999999999999999999999999999999999986 35899999999999974
No 9
>1rtr_A Geranyltranstransferase; 2.50A {Staphylococcus aureus} SCOP: a.128.1.1
Probab=100.00 E-value=2e-64 Score=478.08 Aligned_cols=281 Identities=31% Similarity=0.500 Sum_probs=244.1
Q ss_pred hcHHHHHHHHHHHHHHHHHHhhccC-CchhHHHHHHHhhhcCCCCcchHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHH
Q 019903 40 FDLKTYWTTLITEIDQNLEKAITVK-YPEQIYESMRYSVLAKGTKRAPPVMCVAACELFGVNRIAAFPTACALEMVHAAS 118 (334)
Q Consensus 40 ~~~~~~~~~~~~~i~~~L~~~~~~~-~~~~l~~~~~y~~~~~gGKrlRp~l~ll~~~~~g~~~~~~~~lA~avEliH~as 118 (334)
|+|.. ..+.|++.|.+.++.. .++.+.++++|.+.. ||||+||.|++++++++|++++.++++|++|||||++|
T Consensus 4 m~~~~----~~~~v~~~l~~~l~~~~~~~~l~~~~~y~~~~-gGKrlRp~L~l~~~~~~g~~~~~~~~~A~avEliH~as 78 (301)
T 1rtr_A 4 LPMNK----LIDEVNNELSVAINKSVMDTQLEESMLYSLNA-GGKRIRPVLLLLTLDSLNTEYELGMKSAIALEMIHTYS 78 (301)
T ss_dssp CCHHH----HHHHHHHHHHTSSCCCSSCCSHHHHHHHHHTS-CCCCHHHHHHHHHHHHTTSCGGGGHHHHHHHHHHHHHH
T ss_pred CCHHH----HHHHHHHHHHHHhhccCCcHHHHHHHHHHHhC-CCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Confidence 55544 5678999999888651 345799999998874 99999999999999999998888899999999999999
Q ss_pred HHHhCCCCCCCCCCCCCCCCCCCcCChHHHHHHHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHhhhhhhhHhh
Q 019903 119 LIHDDLPCMDDDPSRRGQPSNHTVYGVDIAILAGDALFPLGFQHIVSHTPPHLVPEPRVLRVIAEIARAVGSTGMAAGQF 198 (334)
Q Consensus 119 LIhDDIp~iD~s~~RRG~pt~h~~~G~~~Avl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~GQ~ 198 (334)
||||||||||+|++|||+||+|++||+++|||+||+|++.||+++++... ++.+...+++..+++++|..+++.||.
T Consensus 79 LiHDDiP~~D~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~A~~~l~~~~~---~~~~~~~~~~~~ls~~~g~~~~~~GQ~ 155 (301)
T 1rtr_A 79 LIHDDLPAMDNDDYRRGKLTNHKVYGEWTAILAGDALLTKAFELISSDDR---LTDEVKIKVLQRLSIASGHVGMVGGQM 155 (301)
T ss_dssp HHHHHSTTTTCCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHTCTT---SCHHHHHHHHHHHHHHHSTTTHHHHHH
T ss_pred HHhCCchhccCCCccCCCccHHhhcCHHHHHHHHHHHHHHHHHHHHHhcc---CCchHHHHHHHHHHHHHhHhHHHHHHH
Confidence 99999999999999999999999999999999999999999999988521 345567788888888877778999999
Q ss_pred hhccC-----ChhHHHHHHHhhHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHhhHhhhhcCCC----CCc
Q 019903 199 LDLEG-----EPNLVEFVQEKKFGEMSECSAVCGGFLAGADDDEIQSLRRYGRAVGVLYQVVDDILEAKAQTP----RDE 269 (334)
Q Consensus 199 lDl~~-----~~~~y~~i~~~KTa~Lf~~a~~lGa~lag~~~~~~~~l~~~G~~lG~afQi~DD~lD~~~~~~----~~~ 269 (334)
+|+.+ +.++|.+|+.+|||+||++||++|++++|++++.++.+++||.++|+||||+||++|++++++ ..+
T Consensus 156 ~Dl~~~~~~~~~~~y~~i~~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQI~DDilD~~~d~~~~GK~~g 235 (301)
T 1rtr_A 156 LDMQSEGQPIDLETLEMIHKTKTGALLTFAVMSAADIANVDDTTKEHLESYSYHLGMMFQIKDDLLDCYGDEAKLGKKVG 235 (301)
T ss_dssp HHHHTTTSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC------
T ss_pred HHHHccCCCCCHHHHHHHHHhchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhCCCcc
Confidence 99976 678999999999999999999999999999999999999999999999999999999998654 357
Q ss_pred hHHhhcCchHHHHhHHHHHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHhcccc
Q 019903 270 EKKKKKGKSYVAFYGVEKAMEVAEELRAKAKEELDRFKKYGDNVLPLYSFIDYAADREFS 329 (334)
Q Consensus 270 ~Dl~~~k~t~~~~~gle~a~~~a~~~~~~A~~~L~~lp~~~~~~~~L~~l~~~~~~R~~~ 329 (334)
+|+.+||.|||.+++++++++.+++|.++|+++|+.||+ ++.++.|.++++|+++|.+.
T Consensus 236 ~Dl~~gK~T~p~l~al~~a~~~a~~~~~~A~~~L~~l~~-~~~~~~L~~l~~~i~~R~~~ 294 (301)
T 1rtr_A 236 SDLENNKSTYVSLLGKDGAEDKLTYHRDAAVDELTQIDE-QFNTKHLLEIVDLFYSRDHK 294 (301)
T ss_dssp -------CCHHHHHHHHHHHHHHHHHHHHHHHHHHTSCT-TSCCHHHHHHHHHHHCC---
T ss_pred hHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHHHhhcc
Confidence 999999999999999999999999999999999999997 67889999999999999864
No 10
>3m0g_A Farnesyl diphosphate synthase; structural genomics, protein structure initiative, NYSGXRC, biosynthesis, transferase, PSI-2; 1.90A {Rhodobacter capsulatus} PDB: 3lvs_A
Probab=100.00 E-value=9.2e-65 Score=478.96 Aligned_cols=278 Identities=29% Similarity=0.475 Sum_probs=237.3
Q ss_pred hcHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHhhhcCCCCcchHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHH
Q 019903 40 FDLKTYWTTLITEIDQNLEKAITVKYPEQIYESMRYSVLAKGTKRAPPVMCVAACELFGVNRIAAFPTACALEMVHAASL 119 (334)
Q Consensus 40 ~~~~~~~~~~~~~i~~~L~~~~~~~~~~~l~~~~~y~~~~~gGKrlRp~l~ll~~~~~g~~~~~~~~lA~avEliH~asL 119 (334)
|+|.++++...+.|++.|.+.++...|+.+.++++|. .. ||||+||.|++++++++|++++.+..+|++|||||++||
T Consensus 1 m~~~~~~~~~~~~ve~~l~~~~~~~~~~~l~~~~~y~-~~-gGKrlRp~L~l~~~~~~g~~~~~~~~~A~avEliH~asL 78 (297)
T 3m0g_A 1 MSLSERLKEVQDAVETAMAAAIGRLPAGDLRDAMAYA-AQ-GGKRLRAFLAIESAAIHGISMAQAMPAALAVEALHAYSL 78 (297)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHTSCCSHHHHHHHHH-HS-CSCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHH-cC-CCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHH
Confidence 5788999999999999999999866567899999998 64 999999999999999999999999999999999999999
Q ss_pred HHhCCCCCCCCCCCCCCCCCCCcCChHHHHHHHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHhhhhhhhHhhh
Q 019903 120 IHDDLPCMDDDPSRRGQPSNHTVYGVDIAILAGDALFPLGFQHIVSHTPPHLVPEPRVLRVIAEIARAVGSTGMAAGQFL 199 (334)
Q Consensus 120 IhDDIp~iD~s~~RRG~pt~h~~~G~~~Avl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~GQ~l 199 (334)
|||||||||+|++|||+||+|++||+++|||+||+|++.||+.+++... .+.....+++..+++++|..+|+.||.+
T Consensus 79 IHDDip~mD~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~a~~~l~~~~~---~~~~~~~~~~~~l~~~~g~~~~~~GQ~l 155 (297)
T 3m0g_A 79 VHDDMPCMDNDDLRRGLPTVHKKWDDATAVLAGDALQTLAFELCTDPVL---GSAENRVALVAALAQASGAEGMVYGQAL 155 (297)
T ss_dssp HHHTSTTTTCCSEETTEECHHHHSCHHHHHHHHHHHHHHHHHHTTCGGG---CCHHHHHHHHHHHHHHHSTTTHHHHHHH
T ss_pred HhcCccccCCCCccCCCCCchhhcChHHHHHHHHHHHHHHHHHHHHhcc---CChHHHHHHHHHHHHHHhHhHHHHhHHH
Confidence 9999999999999999999999999999999999999999999987531 1344567788888888777789999999
Q ss_pred hccC-------ChhHHHHHHHhhHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHhhHhhhhcCCCC----C
Q 019903 200 DLEG-------EPNLVEFVQEKKFGEMSECSAVCGGFLAGADDDEIQSLRRYGRAVGVLYQVVDDILEAKAQTPR----D 268 (334)
Q Consensus 200 Dl~~-------~~~~y~~i~~~KTa~Lf~~a~~lGa~lag~~~~~~~~l~~~G~~lG~afQi~DD~lD~~~~~~~----~ 268 (334)
|+.+ +.++|.+|+.+|||+||++||++|++++|++++ .+++||.++|+||||+||++|++++++. .
T Consensus 156 Dl~~~~~~~~~~~~~y~~i~~~KTg~L~~~~~~~ga~lag~~~~---~l~~~g~~lG~aFQI~DDilD~~~~~~~~GK~~ 232 (297)
T 3m0g_A 156 DIAAETAAVPLTLDEIIRLQAGKTGALISFAAQAGAILAGADRG---PLTAYATALGLAFQIADDILDVEGNEEAAGKRL 232 (297)
T ss_dssp HHHHTTSSSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTCCCH---HHHHHHHHHHHHHHHHTTCC-------------
T ss_pred HHHhhhcCCCCCHHHHHHHHccchHHHHHHHHHHHHHHcCCCHH---HHHHHHHHHHHHHHHHHHHHhccCCHHHhCCCc
Confidence 9864 568999999999999999999999999998876 8999999999999999999999987643 5
Q ss_pred chHHhhcCchHHHHhHHHHHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHhccc
Q 019903 269 EEKKKKKGKSYVAFYGVEKAMEVAEELRAKAKEELDRFKKYGDNVLPLYSFIDYAADREF 328 (334)
Q Consensus 269 ~~Dl~~~k~t~~~~~gle~a~~~a~~~~~~A~~~L~~lp~~~~~~~~L~~l~~~~~~R~~ 328 (334)
++|+.+||.|||.++|+++|++.++++.++|+++|+.||. + .+.|.+|++|+++|.+
T Consensus 233 g~Dl~~gK~T~p~l~~l~~a~~~~~~~~~~A~~~L~~~~~-~--~~~L~~l~~~~~~R~~ 289 (297)
T 3m0g_A 233 GKDAEAHKATFVSLLGLAGAKSRAADLVAEAEAALAPYGE-A--ASTLRACARYVIERDK 289 (297)
T ss_dssp --------CCHHHHHCSSHHHHHHHHHHHHHHHHTGGGGG-G--GHHHHHHHHHHTC---
T ss_pred cchhhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-C--HHHHHHHHHHHHHhcc
Confidence 7899999999999999999999999999999999999987 2 4899999999999975
No 11
>3pde_A Farnesyl-diphosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative; HET: IPE; 1.75A {Lactobacillus brevis} PDB: 3m9u_A*
Probab=100.00 E-value=1.2e-64 Score=479.86 Aligned_cols=284 Identities=28% Similarity=0.472 Sum_probs=251.4
Q ss_pred cHHHHHHHHHHHHHHHHHHhhccC-CchhHHHHHHHhhhcCCCCcchHHHHHHHHHHhCCCchhh--HHHHHHHHHHHHH
Q 019903 41 DLKTYWTTLITEIDQNLEKAITVK-YPEQIYESMRYSVLAKGTKRAPPVMCVAACELFGVNRIAA--FPTACALEMVHAA 117 (334)
Q Consensus 41 ~~~~~~~~~~~~i~~~L~~~~~~~-~~~~l~~~~~y~~~~~gGKrlRp~l~ll~~~~~g~~~~~~--~~lA~avEliH~a 117 (334)
+|.++++...+.|++.|.+.++.. .++.+.++++|.+.. ||||+||.|++++++++|++.+.+ .++|++|||||++
T Consensus 7 ~~~~~~~~~~~~ve~~l~~~l~~~~~~~~l~~~~~y~~~~-gGKrlRp~L~l~~~~~~g~~~~~~~~~~~A~aiEliH~a 85 (309)
T 3pde_A 7 RLIAFEDQWVPALNAPLKQAILADSQDAQLAAAMTYSVLA-GGKRLRPLLTVATMQSLGVTFVPERHWRPVMALELLHTY 85 (309)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHTCSCHHHHHHHHHHHHT-CCCCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHhC-CCCchHHHHHHHHHHHhCCCHHHHhHhHHHHHHHHHHHH
Confidence 578899999999999999998764 357899999999875 999999999999999999998888 9999999999999
Q ss_pred HHHHhCCCCCCCCCCCCCCCCCCCcCChHHHHHHHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHhhhhhhhHh
Q 019903 118 SLIHDDLPCMDDDPSRRGQPSNHTVYGVDIAILAGDALFPLGFQHIVSHTPPHLVPEPRVLRVIAEIARAVGSTGMAAGQ 197 (334)
Q Consensus 118 sLIhDDIp~iD~s~~RRG~pt~h~~~G~~~Avl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~GQ 197 (334)
|||||||||||+|++|||+||+|++||+++|||+||+|++.||+.+++.. .+.....+++..++++.|..+|+.||
T Consensus 86 SLIHDDiP~mD~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~Af~~l~~~~----~~~~~~~~~~~~l~~a~g~~~m~~GQ 161 (309)
T 3pde_A 86 SLIHDDLPAMDNDALRRGEPTNHVKFGAGMATLAGDGLLTLAFQWLTATD----LPATMQAALVQALATAAGPSGMVAGQ 161 (309)
T ss_dssp HHHHHHSTTTTCCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHTSSS----CCHHHHHHHHHHHHHHHSTTTHHHHH
T ss_pred HHHHCCchhccCCCCCCCCcchhhhcChHHHHHHHHHHHHHHHHHHHhcC----CChHHHHHHHHHHHHHhhHhHHHHhH
Confidence 99999999999999999999999999999999999999999999998753 34556678888888887767899999
Q ss_pred hhhccC-----ChhHHHHHHHhhHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHhhHhhhhcCCCC----C
Q 019903 198 FLDLEG-----EPNLVEFVQEKKFGEMSECSAVCGGFLAGADDDEIQSLRRYGRAVGVLYQVVDDILEAKAQTPR----D 268 (334)
Q Consensus 198 ~lDl~~-----~~~~y~~i~~~KTa~Lf~~a~~lGa~lag~~~~~~~~l~~~G~~lG~afQi~DD~lD~~~~~~~----~ 268 (334)
.+|+.+ +.++|.+|+.+|||+||++||++|++++|++++.++.+++||.++|+||||+||++|++++++. .
T Consensus 162 ~lDl~~~~~~~t~~~y~~i~~~KTg~L~~~a~~~ga~laga~~~~~~~l~~~g~~lGlaFQI~DDiLD~~gd~~~~GK~~ 241 (309)
T 3pde_A 162 AKDIQSEHVNLPLSQLRVLHKEKTGALLHYAVQAGLILGQAPEAQWPAYLQFADAFGLAFQIYDDILDVVSSPAEMGKAT 241 (309)
T ss_dssp HHHHHTTTCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHCC--------
T ss_pred HHHHHccCCCCCHHHHHHHHHhccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHhCCCc
Confidence 999976 6789999999999999999999999999999999999999999999999999999999998653 5
Q ss_pred chHHhhcCchHHHHhHHHHHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHhccccc
Q 019903 269 EEKKKKKGKSYVAFYGVEKAMEVAEELRAKAKEELDRFKKYGDNVLPLYSFIDYAADREFSV 330 (334)
Q Consensus 269 ~~Dl~~~k~t~~~~~gle~a~~~a~~~~~~A~~~L~~lp~~~~~~~~L~~l~~~~~~R~~~~ 330 (334)
++|+.+||.|||.++|++++++.++++.++|.++|+.+|.. -..+.|.++++|+++|+..+
T Consensus 242 g~Dl~egK~T~p~l~al~~a~~~~~~~~~~a~~~l~~~~~~-~~~~~L~~l~~~~~~r~~~~ 302 (309)
T 3pde_A 242 QKDADEAKNTYPGKLGLIGANQALIDTIHSGQAALQGLPTS-TQRDDLAAFFSYFDTERVNE 302 (309)
T ss_dssp ---CTTTSSSHHHHHCHHHHHHHHHHHHHHHHHHHHTSCCC-HHHHHHHGGGGGSCTTTTC-
T ss_pred cchhhcCCccHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhc-cCHHHHHHHHHHHHHhhcCC
Confidence 78999999999999999999999999999999999995541 11122999999999997643
No 12
>3p8r_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.50A {Vibrio cholerae} SCOP: a.128.1.1
Probab=100.00 E-value=2.8e-64 Score=476.90 Aligned_cols=279 Identities=32% Similarity=0.475 Sum_probs=228.0
Q ss_pred HHHHHHHHHHHHHHHhhccC--CchhHHHHHHHhhhcCCCCcchHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHh
Q 019903 45 YWTTLITEIDQNLEKAITVK--YPEQIYESMRYSVLAKGTKRAPPVMCVAACELFGVNRIAAFPTACALEMVHAASLIHD 122 (334)
Q Consensus 45 ~~~~~~~~i~~~L~~~~~~~--~~~~l~~~~~y~~~~~gGKrlRp~l~ll~~~~~g~~~~~~~~lA~avEliH~asLIhD 122 (334)
-+....+.|++.|.+.++.. .|+.+.++++|.+.. ||||+||.|++++++++|++++.+..+|++|||||++|||||
T Consensus 12 ~~~~~~~~ve~~l~~~l~~~~~~~~~l~~~~~y~~~~-gGKrlRp~L~l~~~~~~g~~~~~~~~~A~aiEliH~asLIHD 90 (302)
T 3p8r_A 12 ALSSYQQRNNQQLDQWLNRIPFQTLPLIEAMRYGLLL-GGKRARPYLVYITGQMLGCELSDLDTPASAVECIHAYSLIHD 90 (302)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSCTTSSHHHHHHHHHHS-CCSCHHHHHHHHHHHTTTCCGGGTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhccCCcHHHHHHHHHHHhC-CCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHC
Confidence 45667889999999988754 356799999999875 999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCCCCcCChHHHHHHHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHhhhhhhhHhhhhcc
Q 019903 123 DLPCMDDDPSRRGQPSNHTVYGVDIAILAGDALFPLGFQHIVSHTPPHLVPEPRVLRVIAEIARAVGSTGMAAGQFLDLE 202 (334)
Q Consensus 123 DIp~iD~s~~RRG~pt~h~~~G~~~Avl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~GQ~lDl~ 202 (334)
||||||+|++|||+||+|++||+++|||+||+|++.+|+++++....+ .+.....+++..++++.|..+|+.||.+|+.
T Consensus 91 DIp~mD~s~~RRG~pt~h~~~G~~~AIlaGD~L~~~a~~~l~~~~~~~-~~~~~~~~~~~~l~~a~g~~~~~~GQ~lDl~ 169 (302)
T 3p8r_A 91 DLPAMDDDELRRGKPTCHIQFDEATAILTGDALQTLAFTILAEGDLSA-AGETQRVAMLQALAEASGAQGMCLGQALDLA 169 (302)
T ss_dssp TCHHHHCCC--------------HHHHHHHHHHHHHHHHHHHHSCCCH-HHHTTHHHHHHHHHHHHSTTTHHHHHHHHHH
T ss_pred CcccccCCCcCCCCcchhhhcCHHHHHHHHHHHHHHHHHHHHhccccC-CCHHHHHHHHHHHHHHHhHhHHHHhHHHHHH
Confidence 999999999999999999999999999999999999999999863110 1122356777788877766689999999998
Q ss_pred C-----ChhHHHHHHHhhHHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHhHHhhHhhhhcCCC----CCchHH
Q 019903 203 G-----EPNLVEFVQEKKFGEMSECSAVCGGFLAG-ADDDEIQSLRRYGRAVGVLYQVVDDILEAKAQTP----RDEEKK 272 (334)
Q Consensus 203 ~-----~~~~y~~i~~~KTa~Lf~~a~~lGa~lag-~~~~~~~~l~~~G~~lG~afQi~DD~lD~~~~~~----~~~~Dl 272 (334)
+ +.++|.+|+.+|||+||++||++|++++| ++++.++.+++||.++|+||||+||++|++++++ ..++|+
T Consensus 170 ~~~~~~s~~~y~~i~~~KTa~L~~~~~~~ga~lag~~~~~~~~~l~~~g~~lG~aFQI~DDilD~~~~~~~~GK~~g~Dl 249 (302)
T 3p8r_A 170 AENRLISLEELETIHRNKTGALMRCAIRLGALAAGEKGRAMLPHLDRYAEAVGLAFQVQDDILDIISDTETLGKPQGSDQ 249 (302)
T ss_dssp TTTSCCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHTTC------------
T ss_pred ccCCCCCHHHHHHHhccCcHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHhCCCcchHH
Confidence 7 67899999999999999999999999999 7888889999999999999999999999998764 357899
Q ss_pred hhcCchHHHHhHHHHHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHhccc
Q 019903 273 KKKGKSYVAFYGVEKAMEVAEELRAKAKEELDRFKKYGDNVLPLYSFIDYAADREF 328 (334)
Q Consensus 273 ~~~k~t~~~~~gle~a~~~a~~~~~~A~~~L~~lp~~~~~~~~L~~l~~~~~~R~~ 328 (334)
.+||.|||.++|+++|++.+++|.++|++.|+.||. .++.|.+|++|+++|++
T Consensus 250 ~egK~T~p~l~~l~~a~~~a~~~~~~A~~~L~~l~~---~~~~L~~l~~~~~~R~~ 302 (302)
T 3p8r_A 250 ELNKSTYPALLGLEGAQQKAHTLLQEALLALEAIPY---NTEHLEEFARYVVERKN 302 (302)
T ss_dssp ---CCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCSS---CTHHHHHHHHHHHHCCC
T ss_pred hcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc---cHHHHHHHHHHHHhccC
Confidence 999999999999999999999999999999999987 37899999999999974
No 13
>3llw_A Geranyltranstransferase (ISPA); structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Helicobacter pylori} PDB: 3q1o_A*
Probab=100.00 E-value=1.1e-63 Score=474.04 Aligned_cols=283 Identities=26% Similarity=0.385 Sum_probs=246.7
Q ss_pred hhcHHHHHHHHHHHHHHHHHHhhcc--CCchhHHHHHHHhhhcCCCCcchHHHHHHHHHHhCCCc------hhhHHHHHH
Q 019903 39 QFDLKTYWTTLITEIDQNLEKAITV--KYPEQIYESMRYSVLAKGTKRAPPVMCVAACELFGVNR------IAAFPTACA 110 (334)
Q Consensus 39 ~~~~~~~~~~~~~~i~~~L~~~~~~--~~~~~l~~~~~y~~~~~gGKrlRp~l~ll~~~~~g~~~------~~~~~lA~a 110 (334)
.|+|..+++.... |++.|.+.++. ..++.+.++++|.+.. ||||+||.|++++++++|++. +.+..+|++
T Consensus 5 ~~~~~~~~~~~~~-ve~~l~~~~~~~~~~~~~l~~a~~y~~~~-gGKrlRp~Lvl~~~~~~g~~~~~~~~~~~~~~~A~a 82 (311)
T 3llw_A 5 SPNLSFYYNECER-FESFLKNHHLHLESFHPYLEKAFFEMVLN-GGKRFRPKLFLAVLCALVGQKDYSNQQTEYFKIALS 82 (311)
T ss_dssp CHHHHHHHHHHHH-HHHHHHTCCCCCCSSCSSHHHHHHHHHHS-CCCCHHHHHHHHHHHHHSCHHHHHHSHHHHHHHHHH
T ss_pred cccHHHHHHHHHH-HHHHHHHHhhhccCCcHHHHHHHHHHhhC-CCCchHHHHHHHHHHHhCCCcccccchHHHHHHHHH
Confidence 3788999998888 99999999864 2456799999999875 999999999999999999988 889999999
Q ss_pred HHHHHHHHHHHhCCCCCCCCCCCCCCCCCCCcCChHHHHHHHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHhh
Q 019903 111 LEMVHAASLIHDDLPCMDDDPSRRGQPSNHTVYGVDIAILAGDALFPLGFQHIVSHTPPHLVPEPRVLRVIAEIARAVGS 190 (334)
Q Consensus 111 vEliH~asLIhDDIp~iD~s~~RRG~pt~h~~~G~~~Avl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~ 190 (334)
|||||++|||||||||||+|++|||+||+|++||+++|||+||+|++.||+++++.. ++.+...+++..++++.|.
T Consensus 83 iEliH~aSLIHDDIp~mD~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~Af~~l~~~~----~~~~~~~~~i~~la~a~g~ 158 (311)
T 3llw_A 83 IECLHTYSLIHDDLPCMDNAALRRNHPTLHAKYDETTAVLIGDALNTYSFELLSNAL----LESHIIVELIKILSANGGI 158 (311)
T ss_dssp HHHHHHHHHHHHTSTTTTCCSEETTEECHHHHTCHHHHHHHHHHHHHHHHHHHHHSC----SCHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHCCccccCCCcccCCCCchhhhcCHHHHHHHHHHHHHHHHHHHHhcC----CChHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999998732 3455677888888887766
Q ss_pred hhhhhHhhhhccC-----ChhHHHHHHHhhHHHHHHHHHHHHHHhcCCCHHHH-HHHHHHHHHHHHHHhHHhhHhhhhcC
Q 019903 191 TGMAAGQFLDLEG-----EPNLVEFVQEKKFGEMSECSAVCGGFLAGADDDEI-QSLRRYGRAVGVLYQVVDDILEAKAQ 264 (334)
Q Consensus 191 ~~~~~GQ~lDl~~-----~~~~y~~i~~~KTa~Lf~~a~~lGa~lag~~~~~~-~~l~~~G~~lG~afQi~DD~lD~~~~ 264 (334)
.+|+.||.+|+.+ +.++|.+|+.+|||+||++||++|++++|++++.+ +.+++||.++|+||||+||++|++++
T Consensus 159 ~~m~~GQ~lDl~~~~~~~t~~~y~~i~~~KTg~L~~~a~~lga~laga~~~~~~~~l~~~g~~lGlaFQI~DDiLD~~gd 238 (311)
T 3llw_A 159 KGMILGQALDCYFENTPLNLEQLTFLHEHKTAKLISASLIMGLVASGIKDEELFKWLQAFGLKMGLCFQVLDDIIDVTQD 238 (311)
T ss_dssp TTHHHHHHHHHHTTTSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHhHHHHHHhcCCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 7899999999976 67899999999999999999999999999999988 99999999999999999999999998
Q ss_pred CCC---CchHHhhcCchHHHHhHHHHHHHHHHHHHHHHHHHHhhccCCCCC-hHHHHHHHHHHHhccc
Q 019903 265 TPR---DEEKKKKKGKSYVAFYGVEKAMEVAEELRAKAKEELDRFKKYGDN-VLPLYSFIDYAADREF 328 (334)
Q Consensus 265 ~~~---~~~Dl~~~k~t~~~~~gle~a~~~a~~~~~~A~~~L~~lp~~~~~-~~~L~~l~~~~~~R~~ 328 (334)
++. +..+ .+||+|||.++|++++++.++++.++|.+.|+.|+..+.. .+.|.++++|+++|+.
T Consensus 239 ~~~~GK~~g~-~~gK~T~p~l~~l~~a~~~~~~~~~~a~~~l~~~~~~~~~~~~~l~~l~~~~~~r~~ 305 (311)
T 3llw_A 239 EEESGKTTHL-DSAKNSFVNLLGLERANNYAQTLKTEVLNDLDALKPAYPLLQENLNALLNTLFKGEG 305 (311)
T ss_dssp -------------CCSCHHHHHCHHHHHHHHHHHHHHHHHHHTTSTTTCHHHHHHHHHHHHHHHC---
T ss_pred hHHHCccccc-ccCcchHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCccHHHHHHHHHHHHHhccc
Confidence 753 2245 9999999999999999999999999999999996542334 5789999999999973
No 14
>2j1p_A Geranylgeranyl pyrophosphate synthetase; transferase, isoprene biosynthesis, multifunctional enzyme, carotenoid biosynthesis; HET: GRG; 1.8A {Sinapis alba} PDB: 2j1o_A 3kra_A 3krc_A* 3krf_A* 3kro_A* 3krp_A* 3oab_A* 3oac_A*
Probab=100.00 E-value=1.4e-62 Score=463.87 Aligned_cols=279 Identities=43% Similarity=0.789 Sum_probs=247.6
Q ss_pred ccchhcHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHhhhcCCCCcchHHHHHHHHHHhCCCchhhHHHHHHHHHHH
Q 019903 36 RSTQFDLKTYWTTLITEIDQNLEKAITVKYPEQIYESMRYSVLAKGTKRAPPVMCVAACELFGVNRIAAFPTACALEMVH 115 (334)
Q Consensus 36 ~~~~~~~~~~~~~~~~~i~~~L~~~~~~~~~~~l~~~~~y~~~~~gGKrlRp~l~ll~~~~~g~~~~~~~~lA~avEliH 115 (334)
-.+..+|..++...++.|++.|.+.++...|+.+.++++|.+.. ||||+||.|++++++++|++++.++++|++|||||
T Consensus 7 ~~~~~~~~~~~~~~~~~v~~~l~~~l~~~~~~~l~~~~~y~~~~-gGKrlRp~L~l~~~~~~g~~~~~~~~~A~avEliH 85 (293)
T 2j1p_A 7 HHHHTDPISYIIRKADSVNKALDSAVPLREPLKIHEAMRYSLLA-GGKRVRPVLCIAACELVGGEESLAMPAACAVEMIH 85 (293)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHSCSCSSHHHHHHHHHHHTS-CCCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred cccccCHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHhC-CCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 34567889999999999999999999776567799999999874 99999999999999999998888999999999999
Q ss_pred HHHHHHhCCCCCCCCCCCCCCCCCCCcCChHHHHHHHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHhhhhhhh
Q 019903 116 AASLIHDDLPCMDDDPSRRGQPSNHTVYGVDIAILAGDALFPLGFQHIVSHTPPHLVPEPRVLRVIAEIARAVGSTGMAA 195 (334)
Q Consensus 116 ~asLIhDDIp~iD~s~~RRG~pt~h~~~G~~~Avl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 195 (334)
+|||||||||+||+|++|||+||+|++||+++|||+||+|++.||+++++.... ..+...+.+++..+++++|..+++.
T Consensus 86 ~asLiHDDip~mD~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~A~~~l~~~~~~-~~~~~~~~~~~~~l~~~~g~~~~~~ 164 (293)
T 2j1p_A 86 TMSLIHDDLPCMDNDDLRRGKPTNHKVYGEDVAVLAGDALLSFAFEHLASATSS-EVSPARVVRAVGELAKAIGTEGLVA 164 (293)
T ss_dssp HHHHHHHTSTTTTCCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHHHSCT-TSCHHHHHHHHHHHHHHHSTTTHHH
T ss_pred HHHHHHCCchhccCCCCCCCCCchhhhcCHHHHHHHHHHHHHHHHHHHHHhccc-cCChHHHHHHHHHHHHHHhHhHHHH
Confidence 999999999999999999999999999999999999999999999999885321 1345677888888888776668999
Q ss_pred HhhhhccC--------ChhHHHHHHHhhHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHhhHhhhhcCCCC
Q 019903 196 GQFLDLEG--------EPNLVEFVQEKKFGEMSECSAVCGGFLAGADDDEIQSLRRYGRAVGVLYQVVDDILEAKAQTPR 267 (334)
Q Consensus 196 GQ~lDl~~--------~~~~y~~i~~~KTa~Lf~~a~~lGa~lag~~~~~~~~l~~~G~~lG~afQi~DD~lD~~~~~~~ 267 (334)
||.+|+.+ +.++|.+|+.+|||+||++||++|++++|++++.++.+++||.++|+||||+||++|+++++
T Consensus 165 GQ~~Dl~~~~~~~~~~~~~~y~~i~~~KTa~L~~~a~~~ga~lag~~~~~~~~l~~~g~~lG~aFQI~DDiLD~~~~~-- 242 (293)
T 2j1p_A 165 GQVVDISSEGLDLNNVGLEHLKFIHLHKTAALLEASAVLGGIIGGGSDEEIERLRKFARCIGLLFQVVDDILDVTKSS-- 242 (293)
T ss_dssp HHHHTTC---CCHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHccCCCCCCCHHHHHHHHHcccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCCc--
Confidence 99999976 23578999999999999999999999999999999999999999999999999999999764
Q ss_pred CchHHhhcCchHHHHhHHHHHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHhccc
Q 019903 268 DEEKKKKKGKSYVAFYGVEKAMEVAEELRAKAKEELDRFKKYGDNVLPLYSFIDYAADREF 328 (334)
Q Consensus 268 ~~~Dl~~~k~t~~~~~gle~a~~~a~~~~~~A~~~L~~lp~~~~~~~~L~~l~~~~~~R~~ 328 (334)
|.|+|.++|+++|++.+++|.++|++.|+.+|. +.++.|.++++|+++|.+
T Consensus 243 --------K~T~p~l~gle~a~~~a~~~~~~A~~~L~~l~~--~~~~~L~~l~~~~~~R~~ 293 (293)
T 2j1p_A 243 --------KLTYPKLMGLEKSREFAEKLNTEARDQLLGFDS--DKVAPLLALANYIANRQN 293 (293)
T ss_dssp --------CCCHHHHHHHHHHHHHHHHHHHHHHHHTTTSCT--TTTHHHHHHHHHHHHCCC
T ss_pred --------cccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHHhhcC
Confidence 899999999999999999999999999999974 468899999999999964
No 15
>3oyr_A Trans-isoprenyl diphosphate synthase; isoprenyl synthase, PSI, protein structure initiative; HET: IPE; 2.00A {Caulobacter crescentus}
Probab=100.00 E-value=6.4e-61 Score=461.33 Aligned_cols=274 Identities=25% Similarity=0.378 Sum_probs=226.5
Q ss_pred chhcHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHhhhcCCCCcchHHHHHHHHHHhCCCchhhHHHHHHHHHHHHH
Q 019903 38 TQFDLKTYWTTLITEIDQNLEKAITVKYPEQIYESMRYSVLAKGTKRAPPVMCVAACELFGVNRIAAFPTACALEMVHAA 117 (334)
Q Consensus 38 ~~~~~~~~~~~~~~~i~~~L~~~~~~~~~~~l~~~~~y~~~~~gGKrlRp~l~ll~~~~~g~~~~~~~~lA~avEliH~a 117 (334)
...++..+++..++.|++.|++.+....| .+.++++|.+.. ||||+||+|++++++++|++.+.++.+|+++||||++
T Consensus 23 ~~~~l~~~l~~~l~~v~~~l~~~l~~~~~-~l~~~~~y~~~~-gGKrlRp~l~ll~~~~~g~~~~~~~~~A~aiEliH~a 100 (345)
T 3oyr_A 23 SVDRLVRLAEADMAGVNRLITDRMQSDVA-IIPALAEHLIAA-GGKRLRPLMTVAAARLAGADNDHFQKLAAAVEFIHTA 100 (345)
T ss_dssp CSHHHHHHTHHHHHHHHHHHHHHTCCSST-HHHHHHHHHHTT-TCCCHHHHHHHHHHHHTTCCSSTHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhccCCh-hHHHHHHHHHhC-CCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 34668889999999999999999987754 699999998874 9999999999999999999999999999999999999
Q ss_pred HHHHhCCCCCCCCCCCCCCCCCCCcCChHHHHHHHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHhhhhhhhHh
Q 019903 118 SLIHDDLPCMDDDPSRRGQPSNHTVYGVDIAILAGDALFPLGFQHIVSHTPPHLVPEPRVLRVIAEIARAVGSTGMAAGQ 197 (334)
Q Consensus 118 sLIhDDIp~iD~s~~RRG~pt~h~~~G~~~Avl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~GQ 197 (334)
||||||| ||+|++|||+||+|.+||+++|||+||||++.||+++++.. ...+++++.+.. .+++.||
T Consensus 101 sLiHDDi--~D~s~~RRG~pt~h~~~G~~~AIl~GD~Ll~~a~~~l~~~~------~~~~~~~~~~~~-----~~~~~GQ 167 (345)
T 3oyr_A 101 TLLHDDV--VDGSQLRRGKVAAHLIWGGAQSVLVGDFLFARAFELMVETN------SMKALEILARAS-----RVIAEGE 167 (345)
T ss_dssp HHHTTTT--C---------CCCSCCTTHHHHHHHHHHHHHHHHHHHHTTT------CHHHHHHHHHHH-----HHHHHHH
T ss_pred HHHHCcc--cCCCCCCCCCccHHHhhCHHHHHHHHHHHHHHHHHHHHhCC------cHHHHHHHHHHH-----HHHHHHH
Confidence 9999999 99999999999999999999999999999999999998753 245555555443 3689999
Q ss_pred hhhccC------ChhHHHHHHHhhHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHhhHhhhhcCCC----C
Q 019903 198 FLDLEG------EPNLVEFVQEKKFGEMSECSAVCGGFLAGADDDEIQSLRRYGRAVGVLYQVVDDILEAKAQTP----R 267 (334)
Q Consensus 198 ~lDl~~------~~~~y~~i~~~KTa~Lf~~a~~lGa~lag~~~~~~~~l~~~G~~lG~afQi~DD~lD~~~~~~----~ 267 (334)
.+|+.+ +.++|.+|+.+|||+||++||++|++++|++++.++.+++||.++|+||||+||++|++++++ .
T Consensus 168 ~~dl~~~~~~~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQi~DD~lD~~~d~~~~GK~ 247 (345)
T 3oyr_A 168 VLQLMRSHDLNLSQAVYLEIIQAKTAELFAAASEAGAVSAGVDVAKSEALRDYGLNLGLAFQLADDALDYGGATETLGKN 247 (345)
T ss_dssp HHHHHTSSCSSCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHTTC----------
T ss_pred HHHHHcCCCCCCCHHHHHHHHHcchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhhcCCC
Confidence 999876 678999999999999999999999999999999999999999999999999999999998764 3
Q ss_pred CchHHhhcCchHHHHhH--------------------------------------HHHHHHHHHHHHHHHHHHHhhccCC
Q 019903 268 DEEKKKKKGKSYVAFYG--------------------------------------VEKAMEVAEELRAKAKEELDRFKKY 309 (334)
Q Consensus 268 ~~~Dl~~~k~t~~~~~g--------------------------------------le~a~~~a~~~~~~A~~~L~~lp~~ 309 (334)
.++|+.+||.|+|.+++ ++++++.+++|.++|++.|+.||+
T Consensus 248 ~g~Dl~egK~TlP~i~al~~~~~~~~~~l~~~l~~~~~~~~~~~~v~~~i~~~gale~a~~~a~~~~~~A~~~L~~lp~- 326 (345)
T 3oyr_A 248 AGDDFREGKATLPLLLAIARSGPREAEFWERAIGRREQTEADFRRARELIIGSGALDATLDLAADYADKAKAALAMFPA- 326 (345)
T ss_dssp ---------CCHHHHHHHHHSCSHHHHHHHHHCC----CCSSHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTTTSCS-
T ss_pred ccchhhcCchHHHHHHHHHhCCHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhCCC-
Confidence 57899999999997765 478999999999999999999998
Q ss_pred CCChHHHHHHHHHHHhcc
Q 019903 310 GDNVLPLYSFIDYAADRE 327 (334)
Q Consensus 310 ~~~~~~L~~l~~~~~~R~ 327 (334)
++.++.|.+|++|+++|.
T Consensus 327 ~~~~~~L~~la~~~~~R~ 344 (345)
T 3oyr_A 327 NDWREALEELADFAVSRR 344 (345)
T ss_dssp SHHHHHHHHHHHHHHHC-
T ss_pred cHHHHHHHHHHHHHHhcc
Confidence 788999999999999995
No 16
>3ipi_A Geranyltranstransferase; isoprene biosynthesis, helical bundle, protein structure initiative II (PSI II), structural genomics, nysgxrc; 1.90A {Methanosarcina mazei}
Probab=100.00 E-value=3.6e-61 Score=454.02 Aligned_cols=261 Identities=27% Similarity=0.382 Sum_probs=229.8
Q ss_pred HHHHHHHHHhhccCCchhHHHHHHHhhhcCCCCcchHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHhCCCCCCCC
Q 019903 51 TEIDQNLEKAITVKYPEQIYESMRYSVLAKGTKRAPPVMCVAACELFGVNRIAAFPTACALEMVHAASLIHDDLPCMDDD 130 (334)
Q Consensus 51 ~~i~~~L~~~~~~~~~~~l~~~~~y~~~~~gGKrlRp~l~ll~~~~~g~~~~~~~~lA~avEliH~asLIhDDIp~iD~s 130 (334)
+.|++.|.+.++...++.+.++++|.+.. ||||+||.|++++++++|++++.+.++|+++||||+|||||||| ||+|
T Consensus 12 ~~i~~~l~~~~~~~~~~~l~~~~~y~~~~-gGKrlRp~L~l~~~~~~g~~~~~~~~~A~avEliH~asLIHDDi--~D~s 88 (295)
T 3ipi_A 12 RYVEAGIKESITLIEDPGLKKMVEHVCHS-GGKRIRPIILLLVSEICSGSYSRSLNAALAVEMMHSASLIHDDL--LDQG 88 (295)
T ss_dssp HHHHHHHHHHHHTCCSHHHHHHHHHHHTT-CCCCHHHHHHHHHHHHHHSCCGGGHHHHHHHHHHHHHHHHHHHH--HHHH
T ss_pred HHHHHHHHHHhhhcCcHHHHHHHHHHHhC-CCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHCcC--cCCC
Confidence 78999999988765556799999999874 99999999999999999999999999999999999999999999 9999
Q ss_pred CCCCCCCCCCCcCChHHHHHHHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHhhhhhhhHhhhhccC-----Ch
Q 019903 131 PSRRGQPSNHTVYGVDIAILAGDALFPLGFQHIVSHTPPHLVPEPRVLRVIAEIARAVGSTGMAAGQFLDLEG-----EP 205 (334)
Q Consensus 131 ~~RRG~pt~h~~~G~~~Avl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~GQ~lDl~~-----~~ 205 (334)
++|||+||+|++||+++|||+||||++.||+++++.. ..+++++.+.. .+++.||.+|+.+ +.
T Consensus 89 ~~RRG~pt~h~~~G~~~AIlaGD~Ll~~a~~ll~~~~-------~~~~~~~~~~~-----~~~~~GQ~~dl~~~~~~~t~ 156 (295)
T 3ipi_A 89 LVRRNLPSAPEKFGPSGALLCGDYLIAKSIAFISPYG-------EKVIQDFGKAG-----MDMAEGEVLDLKLEDESFGE 156 (295)
T ss_dssp TSCTTSCCCCCSSCHHHHHHHHHHHHHHHHHHHGGGC-------HHHHHHHHHHH-----HHHHHHHHHHHC-------C
T ss_pred CCCCCCccHHHhcCccHHHHHHHHHHHHHHHHHHHch-------HHHHHHHHHHH-----HHHHccchHHHHccCCCCCH
Confidence 9999999999999999999999999999999988642 24445444432 3589999999987 56
Q ss_pred hHHHHHHHhhHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHhhHhhhhcCCCCCchHHhhcCchHHHHhH-
Q 019903 206 NLVEFVQEKKFGEMSECSAVCGGFLAGADDDEIQSLRRYGRAVGVLYQVVDDILEAKAQTPRDEEKKKKKGKSYVAFYG- 284 (334)
Q Consensus 206 ~~y~~i~~~KTa~Lf~~a~~lGa~lag~~~~~~~~l~~~G~~lG~afQi~DD~lD~~~~~~~~~~Dl~~~k~t~~~~~g- 284 (334)
++|.+|+.+|||+||++||++|++++|++++.++.+++||+++|+||||+||++|++++++ |+|+.++|.|||.+++
T Consensus 157 ~~y~~~i~~KTg~L~~~a~~~ga~lag~~~~~~~~l~~~g~~lGlaFQI~DDilD~~~~~~--gkd~~~gk~Tlp~l~al 234 (295)
T 3ipi_A 157 NDYFKCIYKKTASLFAISASIGAYTGGAEEELAERFSHFGNALGTAYQIVDDILEFLEVVE--GKESKFTSETLPHIYMK 234 (295)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--C-------CCHHHHHTT
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc--CCCcccCcccHHHHHHH
Confidence 8999999999999999999999999999999999999999999999999999999998764 5788999999999998
Q ss_pred -------HHHHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHhcccc
Q 019903 285 -------VEKAMEVAEELRAKAKEELDRFKKYGDNVLPLYSFIDYAADREFS 329 (334)
Q Consensus 285 -------le~a~~~a~~~~~~A~~~L~~lp~~~~~~~~L~~l~~~~~~R~~~ 329 (334)
+++|++.+++|.++|+++|+.||+ ++.++.|.+|++|++.|.-.
T Consensus 235 ~~~~~~~le~a~~~a~~~~~~A~~~L~~lp~-~~~~~~L~~l~~~~~~~~~~ 285 (295)
T 3ipi_A 235 STSKEEALKKSIDCVKLHVAAAKETLETFRE-CPARDKLFQITDYITVDMLE 285 (295)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHHHHTTSCC-SHHHHHHHHHHHHTTGGGGC
T ss_pred hcCchhHHHHHHHHHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHHHhCcc
Confidence 999999999999999999999997 67889999999999998643
No 17
>3mzv_A Decaprenyl diphosphate synthase; transferase, structural genomics, PSI-2, protein structure initiative; 1.90A {Rhodobacter capsulatus}
Probab=100.00 E-value=1.7e-60 Score=458.19 Aligned_cols=277 Identities=23% Similarity=0.391 Sum_probs=239.7
Q ss_pred cchhcHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHhhhcCCCCcchHHHHHHHHHHhCCCchhhHHHHHHHHHHHH
Q 019903 37 STQFDLKTYWTTLITEIDQNLEKAITVKYPEQIYESMRYSVLAKGTKRAPPVMCVAACELFGVNRIAAFPTACALEMVHA 116 (334)
Q Consensus 37 ~~~~~~~~~~~~~~~~i~~~L~~~~~~~~~~~l~~~~~y~~~~~gGKrlRp~l~ll~~~~~g~~~~~~~~lA~avEliH~ 116 (334)
+.+.++..+++..++.|++.|.+.+....++.+.++++|.+.. ||||+||.|++++++++|++.+.++.+|+++||||+
T Consensus 9 ~~~~~l~~~l~~~l~~v~~~l~~~~~~~~~~~l~~~~~y~~~~-gGKrlRp~l~l~~~~~~g~~~~~~~~~A~aiEliH~ 87 (341)
T 3mzv_A 9 KPHDRLAQALAEDMAAVNALIRERMSSEHAPRIPEVTAHLIEA-GGKRLRPMLTLAAARLVGYGGPFHVHLAATVEFIHT 87 (341)
T ss_dssp CHHHHHHHHTHHHHHHHHHHHHHHSCCSSCTHHHHHHHHHHHS-CCCCHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHhC-CCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 4556788899999999999999999876345799999999875 999999999999999999999999999999999999
Q ss_pred HHHHHhCCCCCCCCCCCCCCCCCCCcCChHHHHHHHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHhhhhhhhH
Q 019903 117 ASLIHDDLPCMDDDPSRRGQPSNHTVYGVDIAILAGDALFPLGFQHIVSHTPPHLVPEPRVLRVIAEIARAVGSTGMAAG 196 (334)
Q Consensus 117 asLIhDDIp~iD~s~~RRG~pt~h~~~G~~~Avl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~G 196 (334)
|||||||| ||+|++|||+||+|.+||+++|||+||||++.||+.+++.. ...+++++.+.. .+++.|
T Consensus 88 asLiHDDI--~D~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~------~~~~~~~~~~~~-----~~~~~G 154 (341)
T 3mzv_A 88 ATLLHDDV--VDESRQRRGRPTANLLWDNKSSVLVGDYLFARSFQLMTDTG------NMRVMEILANAS-----AVIAEG 154 (341)
T ss_dssp HHHHHHHC--------CTTSCCHHHHSCHHHHHHHHHHHHHHHHHHHGGGC------CHHHHHHHHHHH-----HHHHHH
T ss_pred HHHHHcCc--cCCCCCcCCCccHHHhcChHHHHHHHHHHHHHHHHHHHhCC------cHHHHHHHHHHH-----HHHHHH
Confidence 99999999 99999999999999999999999999999999999998753 235555555443 368999
Q ss_pred hhhhccC------ChhHHHHHHHhhHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHhhHhhhhcCCC----
Q 019903 197 QFLDLEG------EPNLVEFVQEKKFGEMSECSAVCGGFLAGADDDEIQSLRRYGRAVGVLYQVVDDILEAKAQTP---- 266 (334)
Q Consensus 197 Q~lDl~~------~~~~y~~i~~~KTa~Lf~~a~~lGa~lag~~~~~~~~l~~~G~~lG~afQi~DD~lD~~~~~~---- 266 (334)
|.+|+.+ +.++|.+|+.+|||+||++||++|++++|++++.++.+++||.++|+||||+||++|++++++
T Consensus 155 Q~~dl~~~~~~~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQI~DD~ld~~~d~~~~GK 234 (341)
T 3mzv_A 155 EVLQLTAAQNLATTEDIYLRVIRGKTAALFSAATEVGGIIGGAPEDQVQALFDYGDALGIAFQIVDDLLDYGGKSAEIGK 234 (341)
T ss_dssp HHHHHHHTTCTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHC---------
T ss_pred HHHHHHhccCCCCCHHHHHHHHHcchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhhcCC
Confidence 9999865 678999999999999999999999999999999999999999999999999999999998764
Q ss_pred CCchHHhhcCchHHHHhH--------------------------------------HHHHHHHHHHHHHHHHHHHhhccC
Q 019903 267 RDEEKKKKKGKSYVAFYG--------------------------------------VEKAMEVAEELRAKAKEELDRFKK 308 (334)
Q Consensus 267 ~~~~Dl~~~k~t~~~~~g--------------------------------------le~a~~~a~~~~~~A~~~L~~lp~ 308 (334)
..++|+.+||.|||.+++ ++++++++++|.++|++.|+.||+
T Consensus 235 ~~g~Dl~egK~Tlp~i~al~~~~~~~~~~l~~~l~~~~~~~~~~~~i~~~l~~~ga~~~a~~~a~~~~~~A~~~L~~lp~ 314 (341)
T 3mzv_A 235 NTGDDFRERKLTMPVIKAVALADEAERAFWKRVIEKGDQQDGDLEHAMALMTKHGTLEATRLAAIGWTDTARKALAKLPD 314 (341)
T ss_dssp -CCHHHHTTCCCHHHHHHHHTCCHHHHHHHHHHTTSCCCCTTHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred CCCcccccCchhHHHHHHHHhCCHhHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 357999999999986643 688999999999999999999998
Q ss_pred CCCChHHHHHHHHHHHhccc
Q 019903 309 YGDNVLPLYSFIDYAADREF 328 (334)
Q Consensus 309 ~~~~~~~L~~l~~~~~~R~~ 328 (334)
++.++.|.+|++|+++|..
T Consensus 315 -~~~~~~L~~la~~~~~r~~ 333 (341)
T 3mzv_A 315 -HPLRQMLDDLADYVVERVR 333 (341)
T ss_dssp -CHHHHHHHHHHHHHTGGGC
T ss_pred -CHHHHHHHHHHHHHHhccc
Confidence 6889999999999999974
No 18
>3npk_A Geranyltranstransferase; isoprene biosynthesis, SGX, structural genomics protein structure initiative; 1.50A {Campylobacter jejuni}
Probab=100.00 E-value=1.5e-60 Score=448.79 Aligned_cols=269 Identities=25% Similarity=0.373 Sum_probs=229.8
Q ss_pred HHHHHHHHHHhhccC--CchhHHHHHHHhhhcCCCCcchHHHHHHHHHHhCCC-chhhHHHHHHHHHHHHHHHHHhCCCC
Q 019903 50 ITEIDQNLEKAITVK--YPEQIYESMRYSVLAKGTKRAPPVMCVAACELFGVN-RIAAFPTACALEMVHAASLIHDDLPC 126 (334)
Q Consensus 50 ~~~i~~~L~~~~~~~--~~~~l~~~~~y~~~~~gGKrlRp~l~ll~~~~~g~~-~~~~~~lA~avEliH~asLIhDDIp~ 126 (334)
.+.|++.|++.++.. .++.+.++++|.+.. ||||+||.|++++++++|++ .+.+..+|++|||||++|||||||||
T Consensus 6 ~~~i~~~l~~~~~~~~~~~~~l~~~~~y~~~~-gGKrlRp~L~l~~~~~~~~~~~~~~~~~A~aiEliH~aSLIHDDIp~ 84 (291)
T 3npk_A 6 KELFIHHLEKNLPKVESFHPFFNEALALMLKA-GGKHFRAQLLLSVVQSNKPELLNQALDVALALEFIHTYSLIHDDLPA 84 (291)
T ss_dssp HHHHHHHHHTCCCCCCSSCSSHHHHHHHHHHH-CCCCHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHTSTT
T ss_pred HHHHHHHHHHHhhhccCCcHHHHHHHHHHHhC-CCcchHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHCCccc
Confidence 467888888877532 345799999999875 99999999999999999987 47899999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCcCChHHHHHHHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHhhhhhhhHhhhhccC---
Q 019903 127 MDDDPSRRGQPSNHTVYGVDIAILAGDALFPLGFQHIVSHTPPHLVPEPRVLRVIAEIARAVGSTGMAAGQFLDLEG--- 203 (334)
Q Consensus 127 iD~s~~RRG~pt~h~~~G~~~Avl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~GQ~lDl~~--- 203 (334)
||+|++|||+||+|++||+++|||+||+|++.||+.+++.. .+.....+++..++++.|..+|+.||.+|+.+
T Consensus 85 mD~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~A~~~l~~~~----~~~~~~~~~~~~l~~~~g~~~~~~GQ~lDl~~~~~ 160 (291)
T 3npk_A 85 MDNADFRRGIPTLHKSYDETTAILVGDALNTEAFLVLSHAH----LKDEIKIKLIKTLAFNAGLNGMVIGQAIDCFFEDK 160 (291)
T ss_dssp TTCCSEETTEECHHHHTCHHHHHHHHHHHHHHHHHHHHTSS----SCHHHHHHHHHHHHHHHSTTTHHHHHHHHHHTTTS
T ss_pred ccCCCCCCCCCchhhhcCHHHHHHHHHHHHHHHHHHHHhcC----CChHHHHHHHHHHHHHHhHHHHHHHHHHHHhccCC
Confidence 99999999999999999999999999999999999998743 34556677888888776667899999999975
Q ss_pred --ChhHHHHHHHhhHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHhhHhhhhcCCCCCc--hHHhhcCchH
Q 019903 204 --EPNLVEFVQEKKFGEMSECSAVCGGFLAGADDDEIQSLRRYGRAVGVLYQVVDDILEAKAQTPRDE--EKKKKKGKSY 279 (334)
Q Consensus 204 --~~~~y~~i~~~KTa~Lf~~a~~lGa~lag~~~~~~~~l~~~G~~lG~afQi~DD~lD~~~~~~~~~--~Dl~~~k~t~ 279 (334)
+.++|.+|+++|||+||++||++|++++|++++.++.+++||.++|+||||+||++|++++++..| .+..++|.||
T Consensus 161 ~~~~~~y~~i~~~KTg~L~~~a~~~ga~laga~~~~~~~l~~~g~~lGlaFQI~DDiLD~~gd~~~~GK~~~~d~gK~T~ 240 (291)
T 3npk_A 161 RLSLNELEFLHTHKTARLIAAALKMGCEICELNNEESNQIYKLGLKLGLIFQINDDIIDVTTSQEQSGKPTNNDIHKNSF 240 (291)
T ss_dssp CCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC----------------CCH
T ss_pred CCCHHHHHHHHHcccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChHHHCCccchhcCcchH
Confidence 678999999999999999999999999999999999999999999999999999999999875422 2445999999
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHh
Q 019903 280 VAFYGVEKAMEVAEELRAKAKEELDRFKKYGDNVLPLYSFIDYAAD 325 (334)
Q Consensus 280 ~~~~gle~a~~~a~~~~~~A~~~L~~lp~~~~~~~~L~~l~~~~~~ 325 (334)
|.++|++.+++.++++.++|.+.|+.|+. +..+.|.++++|..+
T Consensus 241 p~l~~l~~a~~~~~~~~~~a~~~l~~~~~--~~~~~l~~la~~~~~ 284 (291)
T 3npk_A 241 VNLLGLEQAIKTKENLLNECEQDLEKLNE--KLAQMIQNLIIQYLE 284 (291)
T ss_dssp HHHHCHHHHHHHHHHHHHHHHHHHHTSCH--HHHHHHHHHHHHHC-
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHhch--hHHHHHHHHHHHHHh
Confidence 99999999999999999999999999964 226789999999765
No 19
>2ftz_A Geranyltranstransferase; TM0161, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MLY; 1.90A {Thermotoga maritima}
Probab=100.00 E-value=1.5e-60 Score=447.59 Aligned_cols=259 Identities=27% Similarity=0.395 Sum_probs=225.3
Q ss_pred HHHHHHHHHHHhhccCCchhHHHHHHHhhhcCCCCcchHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHhCCCCCC
Q 019903 49 LITEIDQNLEKAITVKYPEQIYESMRYSVLAKGTKRAPPVMCVAACELFGVNRIAAFPTACALEMVHAASLIHDDLPCMD 128 (334)
Q Consensus 49 ~~~~i~~~L~~~~~~~~~~~l~~~~~y~~~~~gGKrlRp~l~ll~~~~~g~~~~~~~~lA~avEliH~asLIhDDIp~iD 128 (334)
..++|++.|.+.++...|+.+.++++|.+.. ||||+||.|++++++++|++++.++.+|+++||||+||||||||||||
T Consensus 14 ~~~~v~~~l~~~l~~~~~~~l~~~~~y~~~~-gGKrlRp~L~l~~~~~~g~~~~~~~~~A~avEliH~asLIHDDIP~~D 92 (284)
T 2ftz_A 14 KXEXVEERIREILRPGWDLLTEEAMLYSATV-GGXRIRPLLVLTLGEDLGVEEEXLLDVAVAVELFHTASLIHDDLPPID 92 (284)
T ss_dssp HHHHHHHHHHHHHSCSSCCHHHHHHHHHHHS-CCCCHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHSTTTT
T ss_pred chHHHHHHHHHHhcccCCHHHHHHHHHHHhC-CCCcHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHhCCchhcC
Confidence 3678889998888544456799999999875 999999999999999999988889999999999999999999999999
Q ss_pred CCCCCCCCCCCCCcCChHHHHHHHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHhhhhhhhHhhhhccC-----
Q 019903 129 DDPSRRGQPSNHTVYGVDIAILAGDALFPLGFQHIVSHTPPHLVPEPRVLRVIAEIARAVGSTGMAAGQFLDLEG----- 203 (334)
Q Consensus 129 ~s~~RRG~pt~h~~~G~~~Avl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~GQ~lDl~~----- 203 (334)
+|++|||+||+|++||+++|||+||+|++.||+++++.. ...+++.+.+.. .+++.||.+|+.+
T Consensus 93 ~s~~RRG~pt~h~~~G~~~AIl~GD~Ll~~a~~~l~~~~------~~~~~~~l~~~~-----~~~~~GQ~ldl~~~~~~~ 161 (284)
T 2ftz_A 93 NADFRRGXPSCHRTYGEDIALLAGDGLFFLAFSQISXIG------NSXIFEEFSETA-----YXLLLGEAMDVEFERRXM 161 (284)
T ss_dssp CCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHTTC------CHHHHHHHHHHH-----HHHHHHHHHHHHHHHSCC
T ss_pred CCCCCCCCccHHhhcCHHHHHHHHHHHHHHHHHHHHhCC------hHHHHHHHHHHH-----HHHhhhhHHHHHhccCcC
Confidence 999999999999999999999999999999999998752 234455554443 4689999999854
Q ss_pred --ChhHHHHHHHhhHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHhhHhhhhcCCCC----CchHHhhcCc
Q 019903 204 --EPNLVEFVQEKKFGEMSECSAVCGGFLAGADDDEIQSLRRYGRAVGVLYQVVDDILEAKAQTPR----DEEKKKKKGK 277 (334)
Q Consensus 204 --~~~~y~~i~~~KTa~Lf~~a~~lGa~lag~~~~~~~~l~~~G~~lG~afQi~DD~lD~~~~~~~----~~~Dl~~~k~ 277 (334)
+.++|.+|+.+|||+||++||++|++++|++++ .+++||.++|+||||+||++|++++++. .++|+. |.
T Consensus 162 ~~~~~~y~~i~~~KTa~L~~~~~~~ga~lag~~~~---~l~~~g~~lG~aFQI~DD~lD~~~d~~~~GK~~g~Dl~--K~ 236 (284)
T 2ftz_A 162 EVSQEMVERMYAFXTGALFAFCFSAPFILXGXDHT---XMXLLGEXFGVAFQIYDDLXDILGSFEKVGKDLGKDTE--XV 236 (284)
T ss_dssp CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTCCCH---HHHHHHHHHHHHHHHHHHHHHHHHHCCCC-------------
T ss_pred CCCHHHHHHHHHhhhHHHHHHHHHHHHHHhCCChh---HHHHHHHHHHHHHHHHHhhhhhcCCHHhhCCCcchhcc--cc
Confidence 668999999999999999999999999998877 8999999999999999999999987653 468998 99
Q ss_pred hHHHHhHHHHHHHHHHHHHHHHHHHHhhccCCCCChHH-HHHHHHHHHhc
Q 019903 278 SYVAFYGVEKAMEVAEELRAKAKEELDRFKKYGDNVLP-LYSFIDYAADR 326 (334)
Q Consensus 278 t~~~~~gle~a~~~a~~~~~~A~~~L~~lp~~~~~~~~-L~~l~~~~~~R 326 (334)
|||.+++++++++.+++|.++|++.|+.||. +.++. |.+|++|+++|
T Consensus 237 T~p~l~~l~~a~~~a~~~~~~A~~~L~~l~~--~~~~~~L~~l~~~~~~R 284 (284)
T 2ftz_A 237 TLVXXVGIQXAREMADXYYEEVLXGIESEGL--FRTLFLLXELXQMVEER 284 (284)
T ss_dssp CHHHHHCHHHHHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHTC
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhCCc--hhHHHHHHHHHHHHHcC
Confidence 9999999999999999999999999999985 46788 99999999987
No 20
>1wy0_A Geranylgeranyl pyrophosphate synthetase; pyrococcus horikosh structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.20A {Pyrococcus horikoshii}
Probab=100.00 E-value=7e-60 Score=454.74 Aligned_cols=277 Identities=32% Similarity=0.481 Sum_probs=245.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHhhhcCCCCcchHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHH
Q 019903 42 LKTYWTTLITEIDQNLEKAITVKYPEQIYESMRYSVLAKGTKRAPPVMCVAACELFGVNRIAAFPTACALEMVHAASLIH 121 (334)
Q Consensus 42 ~~~~~~~~~~~i~~~L~~~~~~~~~~~l~~~~~y~~~~~gGKrlRp~l~ll~~~~~g~~~~~~~~lA~avEliH~asLIh 121 (334)
+...++..+..|++.|.+.++...++.+.++++|++.. ||||+||.|++++++++|++++.++.+|+++||||+|||||
T Consensus 7 ~~~~~~~~~~~v~~~l~~~~~~~~~~~l~~~~~~~~~~-gGKrlRp~l~l~~~~~~g~~~~~~~~~A~avEliH~asLiH 85 (342)
T 1wy0_A 7 LFARIKEKAKLIDEKIFELIPEKDPRVLYEAARHYPLA-GGKRVRPFVVLTSTEAVGGDPLRAIYPAVAIELIHNYSLVH 85 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCSCSSHHHHHHHHHTGGG-TCCCHHHHHHHHHTTTTTSCGGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHhC-CCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 44567777889999999998765356799999998875 99999999999999999998888999999999999999999
Q ss_pred hCCCCCCCCCCCCCCCCCCCcCChHHHHHHHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHhhhhhhhHhhhhc
Q 019903 122 DDLPCMDDDPSRRGQPSNHTVYGVDIAILAGDALFPLGFQHIVSHTPPHLVPEPRVLRVIAEIARAVGSTGMAAGQFLDL 201 (334)
Q Consensus 122 DDIp~iD~s~~RRG~pt~h~~~G~~~Avl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~GQ~lDl 201 (334)
||| ||+|++|||+||+|.+||+++|||+||||++.||+++++.. .+.+...+++..+++++ .+++.||.+|+
T Consensus 86 DDi--~D~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~----~~~~~~~~~~~~~~~~~--~~~~~GQ~~dl 157 (342)
T 1wy0_A 86 DDI--MDMDETRRGKPTVHRIWGVNMAILAGDLLFSKAFEAVARAE----IPPEKKARVLEVIVKAS--NELCEGQARDL 157 (342)
T ss_dssp HHH--HHTCCCSTTSCCHHHHHCHHHHHHHHHHHHHHHHHHHHTCC----SCHHHHHHHHHHHHHHH--HHHHHHHHHHH
T ss_pred CCc--ccCCCCCCCCCccccccChhHHHHHHHHHHHHHHHHHHHcc----cCcccHHHHHHHHHHHH--HHHHHHHHHHH
Confidence 999 99999999999999999999999999999999999999863 23344445555555554 57899999998
Q ss_pred cC------ChhHHHHHHHhhHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHhhHhhhhcCC----CCCchH
Q 019903 202 EG------EPNLVEFVQEKKFGEMSECSAVCGGFLAGADDDEIQSLRRYGRAVGVLYQVVDDILEAKAQT----PRDEEK 271 (334)
Q Consensus 202 ~~------~~~~y~~i~~~KTa~Lf~~a~~lGa~lag~~~~~~~~l~~~G~~lG~afQi~DD~lD~~~~~----~~~~~D 271 (334)
.+ +.++|.+|+.+|||+||.+||++|++++|++++.++.+++||.++|+||||+||++|+++++ +..++|
T Consensus 158 ~~~~~~~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQI~DD~lD~~~d~~~~GK~~g~D 237 (342)
T 1wy0_A 158 EFEKKSTVTIEEYMEMISGKTGALFEASAKVGGIIGTDNEEYIKALSSWGRNVGIAFQIWDDVLDLIADEKKLGKPVGSD 237 (342)
T ss_dssp HHTTCSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHTSCSCHH
T ss_pred HcccCCCCCHHHHHHHHHHhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhhhCCCchhH
Confidence 65 67899999999999999999999999999999999999999999999999999999999874 457899
Q ss_pred HhhcCchHHHHhHHH-------------------------------------------------HHHHHHHHHHHHHHHH
Q 019903 272 KKKKGKSYVAFYGVE-------------------------------------------------KAMEVAEELRAKAKEE 302 (334)
Q Consensus 272 l~~~k~t~~~~~gle-------------------------------------------------~a~~~a~~~~~~A~~~ 302 (334)
+.+||.|||.+++++ ++++++++|.++|++.
T Consensus 238 l~egK~Tlp~i~al~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~A~~~ 317 (342)
T 1wy0_A 238 IRKGKKTLIVAHFFENADEKDKQRFLKIFGKYAGDVKGRGIIEEDIKSDVMEAIDLLKKYGSIDYAAEIAKDMIKKANEA 317 (342)
T ss_dssp HHHTCCCHHHHHHHHHCCHHHHHHHHHTSCC-------------CHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHTT
T ss_pred HhCCCCcHHHHHHHHhCCHhHHHHHHHHHcccccccccccccccCCHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHH
Confidence 999999999887664 7788999999999999
Q ss_pred HhhccCCCCChHHHHHHHHHHHhccc
Q 019903 303 LDRFKKYGDNVLPLYSFIDYAADREF 328 (334)
Q Consensus 303 L~~lp~~~~~~~~L~~l~~~~~~R~~ 328 (334)
|+.+|+ ++.++.|..+++++++|.+
T Consensus 318 L~~l~~-~~~~~~L~~l~~~~~~R~~ 342 (342)
T 1wy0_A 318 LRILPK-SKARMDLELLAKFIVEREY 342 (342)
T ss_dssp GGGSCC-CHHHHHHHHHHHHTTTCC-
T ss_pred HHhCCC-cHHHHHHHHHHHHHHhccC
Confidence 999997 6678999999999999964
No 21
>3lmd_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, protein structure initiative, nysgrc; 1.90A {Corynebacterium glutamicum} PDB: 3q2q_A*
Probab=100.00 E-value=2e-59 Score=452.77 Aligned_cols=272 Identities=24% Similarity=0.338 Sum_probs=233.0
Q ss_pred hcHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHhhhcCCCCcchHHHHHHHHHHhC-CCchhhHHHHHHHHHHHHHH
Q 019903 40 FDLKTYWTTLITEIDQNLEKAITVKYPEQIYESMRYSVLAKGTKRAPPVMCVAACELFG-VNRIAAFPTACALEMVHAAS 118 (334)
Q Consensus 40 ~~~~~~~~~~~~~i~~~L~~~~~~~~~~~l~~~~~y~~~~~gGKrlRp~l~ll~~~~~g-~~~~~~~~lA~avEliH~as 118 (334)
.++..+++..++.|++.|++.++.. ++.+.++++|.+. .||||+||.|++++++++| ++.+.++.+|++|||||+||
T Consensus 34 ~~~~~~l~~~l~~ve~~l~~~~~~~-~~~l~~~~~y~~~-~gGKrlRp~L~ll~~~~~~~~~~~~~~~~A~avEliH~as 111 (360)
T 3lmd_A 34 PELTARINDAMVQVEELLHTELSSG-EDFLVDIVMHLTR-AGGKRFRPMFALLASEFGEKPLSENVIKAAVVVEITHLAT 111 (360)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCS-CHHHHHHHHHHCC-CCSCCHHHHHHHHHHTTSSSTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccC-cHHHHHHHHHHHH-CCCCcHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHH
Confidence 4578899999999999999999876 4579999999876 4999999999999999998 78889999999999999999
Q ss_pred HHHhCCCCCCCCCCCCCCCCCCCcCChHHHHHHHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHhhhhhhhHhh
Q 019903 119 LIHDDLPCMDDDPSRRGQPSNHTVYGVDIAILAGDALFPLGFQHIVSHTPPHLVPEPRVLRVIAEIARAVGSTGMAAGQF 198 (334)
Q Consensus 119 LIhDDIp~iD~s~~RRG~pt~h~~~G~~~Avl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~GQ~ 198 (334)
|||||| ||+|++|||+||+|.+||+++|||+||||++.||+++++.. +.+++++.+.. .+++.||.
T Consensus 112 LIHDDI--mD~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~A~~~l~~~~-------~~~~~~~~~~~-----~~~~~GQ~ 177 (360)
T 3lmd_A 112 LYHDDV--MDEASMRRGVPSANARWDNSVAILAGDILLAHASGLMSQLG-------TDTVAHFAETF-----GELVTGQM 177 (360)
T ss_dssp HHHHHH--HC-----------CHHHHHHHHHHHHHHHHHHHHHHHHHHC-------HHHHHHHHHHH-----HHHHHHHH
T ss_pred HHhCCC--cCCCCCCCCCCcHHhhcChHHHHHHHHHHHHHHHHHHHHCC-------HHHHHHHHHHH-----HHHHHHHH
Confidence 999999 99999999999999999999999999999999999998752 24455554443 36899999
Q ss_pred hhccC-----ChhHHHHHHHhhHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHhhHhhhhcCCC----CCc
Q 019903 199 LDLEG-----EPNLVEFVQEKKFGEMSECSAVCGGFLAGADDDEIQSLRRYGRAVGVLYQVVDDILEAKAQTP----RDE 269 (334)
Q Consensus 199 lDl~~-----~~~~y~~i~~~KTa~Lf~~a~~lGa~lag~~~~~~~~l~~~G~~lG~afQi~DD~lD~~~~~~----~~~ 269 (334)
+|+.+ +.++|.+|+.+|||+||++||++|++++|++++.++.+++||.++|+||||+||++|++++++ ..+
T Consensus 178 ldl~~~~~~~t~~~y~~~i~~KTg~L~~~a~~lga~laga~~~~~~~l~~~g~~lG~aFQI~DDilD~~~d~~~~GK~~g 257 (360)
T 3lmd_A 178 RETVGPRDTDPIEHYTNVIREKTGVLIASAGYLGAMHAGAAPEHIDALKNFGAAVGMIFQIVDDIIDIFSETHESGKTPG 257 (360)
T ss_dssp HHHHCCTTSCHHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------CC
T ss_pred HHHhccCCCCCHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCChhhhCCCch
Confidence 99987 467899999999999999999999999999999999999999999999999999999998764 357
Q ss_pred hHHhhcCchHHHHh-------------------------------------HHHHHHHHHHHHHHHHHHHHhhccCCCCC
Q 019903 270 EKKKKKGKSYVAFY-------------------------------------GVEKAMEVAEELRAKAKEELDRFKKYGDN 312 (334)
Q Consensus 270 ~Dl~~~k~t~~~~~-------------------------------------gle~a~~~a~~~~~~A~~~L~~lp~~~~~ 312 (334)
+|+.+||.|||.++ +++++++++++|.++|++.|+.||+ ++.
T Consensus 258 ~Dl~egK~Tlp~l~al~~~~~~~~~L~~~l~~~~~~~~~~~~~~~ll~~~gal~~a~~~a~~~~~~A~~~L~~lp~-~~~ 336 (360)
T 3lmd_A 258 TDLREGVFTLPVLYALREDTPVGAELRDILTGPLEDDETVNHVLELLSQSGGRQAALDEVYRYMDIANAELDRLPD-STV 336 (360)
T ss_dssp HHHHHTCCCHHHHHHHHCCSHHHHHHHHHCSSCCCSHHHHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHTTSCC-SHH
T ss_pred hHHhcCCchHHHHHHHHcCCchHHHHHHHHcCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHhCCC-cHH
Confidence 99999999999765 3788999999999999999999998 678
Q ss_pred hHHHHHHHHHHHhccc
Q 019903 313 VLPLYSFIDYAADREF 328 (334)
Q Consensus 313 ~~~L~~l~~~~~~R~~ 328 (334)
++.|.+|++|+++|..
T Consensus 337 ~~~L~~La~~~~~R~~ 352 (360)
T 3lmd_A 337 KEALRNLATFTVKRVG 352 (360)
T ss_dssp HHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHhcc
Confidence 9999999999999974
No 22
>3rmg_A Octaprenyl-diphosphate synthase; structural genomics, protein structure initiative, isoprene biosynthesis, transferase; 2.30A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=1.9e-59 Score=449.89 Aligned_cols=272 Identities=22% Similarity=0.372 Sum_probs=227.0
Q ss_pred cHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHhhhcCCCCcchHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHH
Q 019903 41 DLKTYWTTLITEIDQNLEKAITVKYPEQIYESMRYSVLAKGTKRAPPVMCVAACELFGVNRIAAFPTACALEMVHAASLI 120 (334)
Q Consensus 41 ~~~~~~~~~~~~i~~~L~~~~~~~~~~~l~~~~~y~~~~~gGKrlRp~l~ll~~~~~g~~~~~~~~lA~avEliH~asLI 120 (334)
.+...++..++.|++.|.+.++.. ++.+.++++|.+.. ||||+||.|++++++++|++.+.++.+|+++||||+||||
T Consensus 8 ~~~~~i~~~l~~v~~~l~~~~~~~-~~~l~~~~~y~~~~-gGKrlRp~l~l~~~~~~g~~~~~~~~~A~aiEliH~asLi 85 (334)
T 3rmg_A 8 LIKTPIEAELEDFKALFDTPLSDS-NALLDSVITHIRKR-NGKMMRPILVLLVARLYGAVTPATLHAAVSLELLHTASLV 85 (334)
T ss_dssp HHHGGGHHHHHHHHHHTC----CC-CHHHHHHHHHTCC-----CHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccC-cHHHHHHHHHHHhC-CCCcHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHH
Confidence 455667788999999999999876 45799999998864 9999999999999999999999999999999999999999
Q ss_pred HhCCCCCCCCCCCCCCCCCCCcCChHHHHHHHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHhhhhhhhHhhhh
Q 019903 121 HDDLPCMDDDPSRRGQPSNHTVYGVDIAILAGDALFPLGFQHIVSHTPPHLVPEPRVLRVIAEIARAVGSTGMAAGQFLD 200 (334)
Q Consensus 121 hDDIp~iD~s~~RRG~pt~h~~~G~~~Avl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~GQ~lD 200 (334)
|||| ||+|++|||+||+|++||+++|||+||||++.||+.+++.. ...+++++.+.. .+++.||.+|
T Consensus 86 HDDI--~D~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~------~~~~~~~~~~~~-----~~~~~GQ~ld 152 (334)
T 3rmg_A 86 HDDV--VDESTERRGQLSVNAIFNNKVSVLAGDYLLATSLVHAEQTN------NYEIIRLVSSLG-----QKLAEGELLQ 152 (334)
T ss_dssp HHHH--HC---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHTT------CHHHHHHHHHHH-----HHHHHHHHHH
T ss_pred HcCc--cCCCCCcCCCccHHHhcChHHHHHHHHHHHHHHHHHHHhCC------cHHHHHHHHHHH-----HHHHHHHHHH
Confidence 9999 99999999999999999999999999999999999998742 345666665543 4689999999
Q ss_pred ccC------ChhHHHHHHHhhHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHhhHhhhhcCC---CCCchH
Q 019903 201 LEG------EPNLVEFVQEKKFGEMSECSAVCGGFLAGADDDEIQSLRRYGRAVGVLYQVVDDILEAKAQT---PRDEEK 271 (334)
Q Consensus 201 l~~------~~~~y~~i~~~KTa~Lf~~a~~lGa~lag~~~~~~~~l~~~G~~lG~afQi~DD~lD~~~~~---~~~~~D 271 (334)
+.+ +.++|.+|+.+|||+||++||++|++++|++++.++.+++||.++|+||||+||++|+++.. +..++|
T Consensus 153 l~~~~~~~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQi~DD~ld~~~~~~~GK~~g~D 232 (334)
T 3rmg_A 153 LSNVSNHSFSEEVYFDVIRKKTAALFAACAEAAALSVQVGEEEVAFARLLGEYIGICFQIKDDIFDYFDSKKIGKPTGND 232 (334)
T ss_dssp HHCCCC--CCHHHHHHHHHHTHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTTSCC------CCHH
T ss_pred HHhCCCCCCCHHHHHHHHcCChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhccCCChhhcCCCchhh
Confidence 876 67899999999999999999999999999999999999999999999999999999999422 235799
Q ss_pred HhhcCchHHHHh--------------------------------------HHHHHHHHHHHHHHHHHHHHhhccCCCCCh
Q 019903 272 KKKKGKSYVAFY--------------------------------------GVEKAMEVAEELRAKAKEELDRFKKYGDNV 313 (334)
Q Consensus 272 l~~~k~t~~~~~--------------------------------------gle~a~~~a~~~~~~A~~~L~~lp~~~~~~ 313 (334)
+.+||+|||.++ +++++++++++|.++|++.|+.||+ ++.+
T Consensus 233 l~egK~T~p~i~al~~~~~~~~~~L~~~l~~~~~~~~~~~~v~~~i~~~g~~~~a~~~~~~~~~~A~~~L~~lp~-~~~~ 311 (334)
T 3rmg_A 233 MLEGKLTLPALYALNTTKDAWAEQIAFKVKEGTATPDEIVRLIEFTKDNGGIEYACRTIEQYKKKAFDLLAALPD-SNIC 311 (334)
T ss_dssp HHTTCCCHHHHHHHHHHCCHHHHHHHHHHHHTCCCHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTSCC-CHHH
T ss_pred hhcCchHHHHHHHHHhCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHhCCC-cHHH
Confidence 999999998653 5788899999999999999999997 7889
Q ss_pred HHHHHHHHHHHhccc
Q 019903 314 LPLYSFIDYAADREF 328 (334)
Q Consensus 314 ~~L~~l~~~~~~R~~ 328 (334)
+.|..|++|+++|.+
T Consensus 312 ~~L~~l~~~~~~R~~ 326 (334)
T 3rmg_A 312 LALRTYLDYVVAREK 326 (334)
T ss_dssp HHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHhccc
Confidence 999999999999975
No 23
>2azj_A Geranylgeranyl pyrophosphate synthetase; hexpps, trans-prenyltransferase; 2.40A {Sulfolobus solfataricus} PDB: 2azk_A
Probab=100.00 E-value=2.8e-59 Score=440.21 Aligned_cols=272 Identities=21% Similarity=0.297 Sum_probs=243.3
Q ss_pred chhcHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHhhhcCCCCcchHHHHHHHHHHhCCCchhhHHHHHHHHHHHHH
Q 019903 38 TQFDLKTYWTTLITEIDQNLEKAITVKYPEQIYESMRYSVLAKGTKRAPPVMCVAACELFGVNRIAAFPTACALEMVHAA 117 (334)
Q Consensus 38 ~~~~~~~~~~~~~~~i~~~L~~~~~~~~~~~l~~~~~y~~~~~gGKrlRp~l~ll~~~~~g~~~~~~~~lA~avEliH~a 117 (334)
+.|++..+|....+.|++.|++.++...++.+.++++|.+ . ||||+||.|++++++++|++++.++++|+++||||++
T Consensus 7 ~~~~~~~~~~~~~~~v~~~l~~~l~~~~~~~l~~~~~y~~-~-gGKrlRp~L~l~~~~~~g~~~~~~~~~A~avEliH~a 84 (289)
T 2azj_A 7 HHMSIIEFWLEAKATIDRLIEQFLNSNRDWDLVDISSYIL-K-DGKRFRGTLNMFFTVALGGDIKDSYGGALAIEILHSA 84 (289)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHCSCTTHHHHHHHHH-S-CCCCHHHHHHHHHHHHTTCCGGGGHHHHHHHHHHHHH
T ss_pred hhccHHHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHh-c-CCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 5688999999999999999999987533456999999986 4 9999999999999999999888899999999999999
Q ss_pred HHHHhCCCCCCCCCCCCCCCCCCCcCChHHHHHHHHHHHHHHHHHH-HhcCCCCCCChHHHHHHHHHHHHHHhhhhhhhH
Q 019903 118 SLIHDDLPCMDDDPSRRGQPSNHTVYGVDIAILAGDALFPLGFQHI-VSHTPPHLVPEPRVLRVIAEIARAVGSTGMAAG 196 (334)
Q Consensus 118 sLIhDDIp~iD~s~~RRG~pt~h~~~G~~~Avl~GD~L~~~a~~~l-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~G 196 (334)
||||||| ||+|++|||+||+|++||+++|||+||+|++.||+.+ ++.. +.+++++.+.. .+|+.|
T Consensus 85 sLIHDDi--~D~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~a~~~l~~~~~-------~~~~~~~~~~~-----~~~~~G 150 (289)
T 2azj_A 85 SLALCDI--VDLDATRRGDKAAWVVYGNRKVIFITNYLIPTALRIIQTSYG-------DDALNTSIELW-----KDTSVG 150 (289)
T ss_dssp HHHHHHH--HTTCCBSSSSBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------HHHHHHHHHHH-----HHHHHH
T ss_pred HHHhCCC--CCCCCCCCCCccHHHhcChHHHHHHHHHHHHHHHHHHHhcCc-------HHHHHHHHHHH-----HHHHHH
Confidence 9999999 9999999999999999999999999999999999999 8742 23445444433 468999
Q ss_pred hhhhccCChhHHHHHHHhhHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHhhHhhhhcCCCCCchHHhhcC
Q 019903 197 QFLDLEGEPNLVEFVQEKKFGEMSECSAVCGGFLAGADDDEIQSLRRYGRAVGVLYQVVDDILEAKAQTPRDEEKKKKKG 276 (334)
Q Consensus 197 Q~lDl~~~~~~y~~i~~~KTa~Lf~~a~~lGa~lag~~~~~~~~l~~~G~~lG~afQi~DD~lD~~~~~~~~~~Dl~~~k 276 (334)
|.+|+.+ .++|.+|+.+|||+||++||++|++++ ++++.++.+++||.++|+||||+||++|++++++ +|+.++|
T Consensus 151 Q~~dl~~-~~~y~~~i~~KTa~L~~~a~~~ga~la-~~~~~~~~l~~~g~~lG~aFQi~DDilD~~~~~K---~dl~~gk 225 (289)
T 2azj_A 151 ALRDMYD-NSDYIRTIELKTGSLFKLSTVLSAYAS-KHYNTKQQMLDVGKYLGIIYQVIDDFVDYKTKKV---EEIDGSA 225 (289)
T ss_dssp HHHTTTT-TSCHHHHHHHHTHHHHHHHHHHHHHHT-TCGGGHHHHHHHHHHHHHHHHHHHHHHHHTTSCT---TTCCTTG
T ss_pred HHHHHhh-HHHHHHHHHcchHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCC---hhhhcCc
Confidence 9999986 788999999999999999999999999 8999999999999999999999999999998753 5789999
Q ss_pred chHHHHh---HHHHH-HHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHhccccc
Q 019903 277 KSYVAFY---GVEKA-MEVAEELRAKAKEELDRFKKYGDNVLPLYSFIDYAADREFSV 330 (334)
Q Consensus 277 ~t~~~~~---gle~a-~~~a~~~~~~A~~~L~~lp~~~~~~~~L~~l~~~~~~R~~~~ 330 (334)
.|+|.++ +.+.+ +..+++|.++|++.|+.+|..++.++.|.++++|+++|...+
T Consensus 226 ~Tlp~l~~~~g~~~a~~~~a~~~~~~A~~~L~~lp~~~~~~~~L~~l~~~~~~R~~~~ 283 (289)
T 2azj_A 226 KQLFKYYREGKLEEYVRSVYLEYKQKYDELISNIPFQSKYLSEIRSLPEFLANGLLKE 283 (289)
T ss_dssp GGGHHHHTTTCHHHHHHHHHHHHHHHHHHHHHTSCCCGGGHHHHHTHHHHHHHHHHHT
T ss_pred ccHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhccccc
Confidence 9999999 88888 789999999999999999864567899999999999998654
No 24
>4dhd_A Polyprenyl synthetase; isoprenoid synthesis, isoprenoid diphosphate synthase, trans; 1.65A {Pyrobaculum calidifontis} PDB: 4gp1_A* 4gp2_A*
Probab=100.00 E-value=4.9e-59 Score=450.66 Aligned_cols=274 Identities=23% Similarity=0.342 Sum_probs=239.8
Q ss_pred cHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHhhhcCCCCcchHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHH
Q 019903 41 DLKTYWTTLITEIDQNLEKAITVKYPEQIYESMRYSVLAKGTKRAPPVMCVAACELFGVNRIAAFPTACALEMVHAASLI 120 (334)
Q Consensus 41 ~~~~~~~~~~~~i~~~L~~~~~~~~~~~l~~~~~y~~~~~gGKrlRp~l~ll~~~~~g~~~~~~~~lA~avEliH~asLI 120 (334)
.+..+++...+.|++.|.+.++...++.+.++++|.+. .||||+||.|++++++++|++.+.++.+|++|||||+||||
T Consensus 5 ~~~~~~~~~~~~v~~~l~~~~~~~~~~~l~~~~~y~~~-~gGKrlRp~L~l~~~~~~g~~~~~~~~~A~aiEliH~asLi 83 (358)
T 4dhd_A 5 VVSRLHQKYGAEVEKALVRYLSIGLAEDFREAVLYQVK-TGGKRLRPLLTLAAAEAVSGQWRPALPAAAIVELIHNYSLI 83 (358)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHGGGS-SCCCCHHHHHHHHHHHHHHSCCGGGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHh-CCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHH
Confidence 46788888999999999999987646689999999886 49999999999999999999999999999999999999999
Q ss_pred HhCCCCCCCCCCCCCCCCCCCcCChHHHHHHHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHhhhhhhhHhhhh
Q 019903 121 HDDLPCMDDDPSRRGQPSNHTVYGVDIAILAGDALFPLGFQHIVSHTPPHLVPEPRVLRVIAEIARAVGSTGMAAGQFLD 200 (334)
Q Consensus 121 hDDIp~iD~s~~RRG~pt~h~~~G~~~Avl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~GQ~lD 200 (334)
|||| ||+|++|||+||+|++||+++|||+||||++.||++++... ....+++++.+.. .+++.||.+|
T Consensus 84 HDDI--~D~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~-----~~~~~~~~~~~~~-----~~~~~GQ~ld 151 (358)
T 4dhd_A 84 YDDI--IDRGDVRRGLPTVRKAFGDNAAILVGIWYREAIEEAVLDTP-----KPTLFAKEVAEVI-----KAIDEGERLD 151 (358)
T ss_dssp HHHH--HTTCCEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHTSS-----SHHHHHHHHHHHH-----HHHHHHHHHH
T ss_pred HCcc--ccCCCCcCCCccHHHhcCHHHHHHHHHHHHHHHHHHHhCCc-----cHHHHHHHHHHHH-----HHHHHHHHHH
Confidence 9999 99999999999999999999999999999999999986431 1234444444433 4689999999
Q ss_pred ccC------------------ChhHHHHHHHhhHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHhhHhhhh
Q 019903 201 LEG------------------EPNLVEFVQEKKFGEMSECSAVCGGFLAGADDDEIQSLRRYGRAVGVLYQVVDDILEAK 262 (334)
Q Consensus 201 l~~------------------~~~~y~~i~~~KTa~Lf~~a~~lGa~lag~~~~~~~~l~~~G~~lG~afQi~DD~lD~~ 262 (334)
+.+ +.++|.+|+.+|||+||++||++|++++|++++.++.+++||.++|+||||+||++|++
T Consensus 152 l~~~~~~~~dp~~~~~~~~~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQI~DD~lD~~ 231 (358)
T 4dhd_A 152 ILFEAAGRSDPYFVQARWREVTLDDYIKMVSLKTGALIAAAAKWGVLSVSDDRGLAEAAWNFGMAAGVAFQIIDDVLDIY 231 (358)
T ss_dssp HHTBSSCCCCHHHHHTCCSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHccccccccccccccCCCCCCHHHHHHHHHcchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 753 45789999999999999999999999999999999999999999999999999999999
Q ss_pred cCCC----CCchHHhhcCc-hHHHHhHHH--------------------------------------HHHHHHHHHHHHH
Q 019903 263 AQTP----RDEEKKKKKGK-SYVAFYGVE--------------------------------------KAMEVAEELRAKA 299 (334)
Q Consensus 263 ~~~~----~~~~Dl~~~k~-t~~~~~gle--------------------------------------~a~~~a~~~~~~A 299 (334)
++++ ..++|+.+||+ |||.+++++ ++++++++|.++|
T Consensus 232 gd~~~~GK~~g~Dl~egK~~T~p~i~al~~~~~~~~~~L~~~l~~~~~~~~~~~~i~~li~~~gai~~a~~~a~~~~~~A 311 (358)
T 4dhd_A 232 GDPKKFGKEIGKDIKEHKRGNAVVAVALSHLGEGERRRLLEILAREVVEEADVREAVALLDSVGAREEALRLAARYREEA 311 (358)
T ss_dssp C-------CTTHHHHTTBSCSHHHHHHHHHSCHHHHHHHHHHHHCSSCCHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHH
T ss_pred CChhhcCCCchhhHhcCChhhHHHHHHHHhCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHHH
Confidence 8764 35799999999 999776544 4789999999999
Q ss_pred HHHHhhccCCCCChHHHHHHHHHHHhcccccc
Q 019903 300 KEELDRFKKYGDNVLPLYSFIDYAADREFSVV 331 (334)
Q Consensus 300 ~~~L~~lp~~~~~~~~L~~l~~~~~~R~~~~~ 331 (334)
++.|+.||+ ++ .|.+|++|+++|++..+
T Consensus 312 ~~~L~~lp~-~~---~L~~la~~~~~R~~~~~ 339 (358)
T 4dhd_A 312 ERHLAKIPN-NG---TLKELLDFIVAREYAEN 339 (358)
T ss_dssp HHHHTTSSS-CH---HHHHHHHHHTTTTTC--
T ss_pred HHHHHcCCC-CH---HHHHHHHHHHhcccccc
Confidence 999999996 33 89999999999998765
No 25
>3aqb_B Component B of hexaprenyl diphosphate synthase; prenyltransferase, transferase; 2.40A {Micrococcus luteus} PDB: 3aqc_B*
Probab=100.00 E-value=2.4e-58 Score=441.20 Aligned_cols=272 Identities=22% Similarity=0.336 Sum_probs=241.3
Q ss_pred cHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHhhhcCCCCcchHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHH
Q 019903 41 DLKTYWTTLITEIDQNLEKAITVKYPEQIYESMRYSVLAKGTKRAPPVMCVAACELFGVNRIAAFPTACALEMVHAASLI 120 (334)
Q Consensus 41 ~~~~~~~~~~~~i~~~L~~~~~~~~~~~l~~~~~y~~~~~gGKrlRp~l~ll~~~~~g~~~~~~~~lA~avEliH~asLI 120 (334)
++...++..++.|++.|.+.++... +.+.++++|.+.. ||||+||.|++++++++|++.+.++.+|+++||||+||||
T Consensus 5 ~~~~~~~~~~~~v~~~l~~~~~~~~-~~l~~~~~~~~~~-gGKr~Rp~l~l~~~~~~g~~~~~~~~~A~avEliH~asLi 82 (325)
T 3aqb_B 5 SYKAFLNPYIIEVEKRLYECIQSDS-ETINKAAHHILSS-GGKRVRPMFVLLSGFLNDTQKDDLIRTAVSLELVHMASLV 82 (325)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHCCSS-HHHHHHHHHHHHS-CCCCHHHHHHHHHHTTSSCCCHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHhcccc-hHHHHHHHHHHhC-CCCcHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHH
Confidence 3556677888999999999987654 5799999998874 9999999999999999998888899999999999999999
Q ss_pred HhCCCCCCCCCCCCCCCCCCCcCChHHHHHHHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHhhhhhhhHhhhh
Q 019903 121 HDDLPCMDDDPSRRGQPSNHTVYGVDIAILAGDALFPLGFQHIVSHTPPHLVPEPRVLRVIAEIARAVGSTGMAAGQFLD 200 (334)
Q Consensus 121 hDDIp~iD~s~~RRG~pt~h~~~G~~~Avl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~GQ~lD 200 (334)
|||| ||+|++|||+||+|.+||+++|||+||||++.+|+.+++.. ...+++++.+.. .+++.||.+|
T Consensus 83 HDDi--~D~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~------~~~~~~~~~~~~-----~~~~~GQ~~d 149 (325)
T 3aqb_B 83 HDDY--IDNSDMRRGNTSVHIAFDKDTAIRTGHFLLARALQNIATIN------NSKFHQIFSKTI-----LEVCFGEFDQ 149 (325)
T ss_dssp HHHH--HHTCCEETTEECHHHHTCHHHHHHHHHHHHHHHHHHTTTCC------CHHHHHHHHHHH-----HHHHHHHHHH
T ss_pred hCcc--ccCCCCCCCCCCcccccChHHHHHHHHHHHHHHHHHHHhCC------hHHHHHHHHHHH-----HHHHHHHHHH
Confidence 9999 99999999999999999999999999999999999998742 345555555443 4689999999
Q ss_pred ccC------ChhHHHHHHHhhHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHhhHhhhhcCC----CCCch
Q 019903 201 LEG------EPNLVEFVQEKKFGEMSECSAVCGGFLAGADDDEIQSLRRYGRAVGVLYQVVDDILEAKAQT----PRDEE 270 (334)
Q Consensus 201 l~~------~~~~y~~i~~~KTa~Lf~~a~~lGa~lag~~~~~~~~l~~~G~~lG~afQi~DD~lD~~~~~----~~~~~ 270 (334)
+.+ +.++|.+|+.+|||+||++||++|++++|++++.++.+++||.++|+||||+||++|+++++ +..++
T Consensus 150 l~~~~~~~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~g~ 229 (325)
T 3aqb_B 150 MADRFNYPVSFTAYLRRINRKTAILIEASCHLGALSSQLDEQSTYHIKQFGHCIGMSYQIIDDILDYTSDEATLGKPVGS 229 (325)
T ss_dssp HHTTTCCCCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHSSCTTH
T ss_pred HHcccCCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhhcCCccch
Confidence 976 67899999999999999999999999999999999999999999999999999999999874 44689
Q ss_pred HHhhcCchHHHHhHHH---------------------------------------HHHHHHHHHHHHHHHHHhhccCCCC
Q 019903 271 KKKKKGKSYVAFYGVE---------------------------------------KAMEVAEELRAKAKEELDRFKKYGD 311 (334)
Q Consensus 271 Dl~~~k~t~~~~~gle---------------------------------------~a~~~a~~~~~~A~~~L~~lp~~~~ 311 (334)
|+.+||.|||.+++++ ++++.+++|.++|++.|+.+|. ++
T Consensus 230 Dl~~gk~T~p~i~al~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~A~~~L~~lp~-~~ 308 (325)
T 3aqb_B 230 DIRNGHITYPLMAAIANLKEQDDDKLEAVVKHLTSTSDDEVYQYIVSQVKQYGIEPAELLSRKYGDKAKYHLSQLQD-SN 308 (325)
T ss_dssp HHHTTCCCHHHHHHHHHHHHTTCCHHHHHHHTCCTTCCHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTSCC-CH
T ss_pred HhhCCCccHHHHHHHHhCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-cH
Confidence 9999999998776543 4467788899999999999998 67
Q ss_pred ChHHHHHHHHHHHhccc
Q 019903 312 NVLPLYSFIDYAADREF 328 (334)
Q Consensus 312 ~~~~L~~l~~~~~~R~~ 328 (334)
.++.|..+++++++|.+
T Consensus 309 ~~~~L~~l~~~~~~R~~ 325 (325)
T 3aqb_B 309 IKDYLEEIHEKMLKRVY 325 (325)
T ss_dssp HHHHHHHHHHHHTTTTC
T ss_pred HHHHHHHHHHHHHhCcC
Confidence 78899999999999974
No 26
>3pko_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; HET: CIT; 1.98A {Lactobacillus brevis} PDB: 3n3d_A
Probab=100.00 E-value=1.3e-58 Score=444.08 Aligned_cols=269 Identities=23% Similarity=0.320 Sum_probs=239.7
Q ss_pred HHHHHHHHHHHHHHHHhhccCCchhHHHHHHHhhhcCCCCcchHHHHHHHHHHhCC--CchhhHHHHHHHHHHHHHHHHH
Q 019903 44 TYWTTLITEIDQNLEKAITVKYPEQIYESMRYSVLAKGTKRAPPVMCVAACELFGV--NRIAAFPTACALEMVHAASLIH 121 (334)
Q Consensus 44 ~~~~~~~~~i~~~L~~~~~~~~~~~l~~~~~y~~~~~gGKrlRp~l~ll~~~~~g~--~~~~~~~lA~avEliH~asLIh 121 (334)
..++.+++.|++.|.+.+....| .+.++++|.+.. ||||+||.|++++++ +|+ +.+.+..+|+++||||+|||||
T Consensus 19 ~~i~~~l~~v~~~l~~~~~~~~~-~l~~~~~~~~~~-gGKrlRp~l~l~~~~-~g~~~~~~~~~~~A~aiEliH~asLiH 95 (334)
T 3pko_A 19 PQVEPQLTALQDYLLRTVQLDNQ-PIHHKILALLKS-GGKLLRPGYFYLFST-FGNAATPAQLQAGAAAIEILHVGTLIH 95 (334)
T ss_dssp TTTHHHHHHHHHHHHHHCCCSCH-HHHHHHHHHHHH-CCCCHHHHHHHHHHT-TCSCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccCCh-HHHHHHHHHHhC-CCCcHHHHHHHHHHH-HcCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 45667889999999999987654 799999999875 999999999999999 675 7788999999999999999999
Q ss_pred hCCCCCCCCCCCCCCCCCCCcCChHHHHHHHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHhhhhhhhHhhhhc
Q 019903 122 DDLPCMDDDPSRRGQPSNHTVYGVDIAILAGDALFPLGFQHIVSHTPPHLVPEPRVLRVIAEIARAVGSTGMAAGQFLDL 201 (334)
Q Consensus 122 DDIp~iD~s~~RRG~pt~h~~~G~~~Avl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~GQ~lDl 201 (334)
||| ||+|++|||+||+|++||+++|||+||||++.||+++++... .+.+++.+.+.. .+++.||.+|+
T Consensus 96 DDi--~D~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~~-----~~~~~~~~~~~~-----~~~~~Gq~~dl 163 (334)
T 3pko_A 96 DDV--IDDSPTRRGVRTIQMTYGQRNAIYAGDFMFTVYFDQVLKSTT-----DRSLIQNHIDAM-----HRILQGELHQM 163 (334)
T ss_dssp HHH--HHTCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHHHCC-----CHHHHHHHHHHH-----HHHHHHHHHHH
T ss_pred Ccc--CCCCCCcCCCccHHHHcCchHHHHHHHHHHHHHHHHHHhcCC-----CHHHHHHHHHHH-----HHHHHHHHHHH
Confidence 999 999999999999999999999999999999999999998642 134455554433 46899999998
Q ss_pred cC------ChhHHHHHHHhhHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHhhHhhhhcCCCC----CchH
Q 019903 202 EG------EPNLVEFVQEKKFGEMSECSAVCGGFLAGADDDEIQSLRRYGRAVGVLYQVVDDILEAKAQTPR----DEEK 271 (334)
Q Consensus 202 ~~------~~~~y~~i~~~KTa~Lf~~a~~lGa~lag~~~~~~~~l~~~G~~lG~afQi~DD~lD~~~~~~~----~~~D 271 (334)
.+ +.++|.+|+.+|||+||++||++|++++|++++.++.+++||.++|+||||+||++|++++++. .++|
T Consensus 164 ~~~~~~~~~~~~yl~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQi~DD~ld~~~~~~~~GK~~g~D 243 (334)
T 3pko_A 164 DLNYREDITLDAYLNEIAGKTAELFALSCYQGAQLAGAPQSVIDRTRDIGIAIGCAYQMLDDILDYAGDPKRTQKPVLED 243 (334)
T ss_dssp HTTTCTTCCHHHHHHHHHHTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCTTSCCHHHHHH
T ss_pred HhccCCCCCHHHHHHHHHcchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhhcCCCCCCc
Confidence 65 6689999999999999999999999999999999999999999999999999999999998764 3589
Q ss_pred HhhcCchHHHHhHH-----------------------------------HHHHHHHHHHHHHHHHHHhhccCCCCChHHH
Q 019903 272 KKKKGKSYVAFYGV-----------------------------------EKAMEVAEELRAKAKEELDRFKKYGDNVLPL 316 (334)
Q Consensus 272 l~~~k~t~~~~~gl-----------------------------------e~a~~~a~~~~~~A~~~L~~lp~~~~~~~~L 316 (334)
+.+||.|||.++++ +++++++++|.++|++.|+.+|. ++.++.|
T Consensus 244 l~egK~Tlp~i~al~~~~~~l~~~l~~~~~~~~~~~~~i~~li~~~ga~~~a~~~~~~~~~~A~~~L~~lp~-~~~~~~L 322 (334)
T 3pko_A 244 LRSGVYSLPLLLSLSHAPRDFHKLLKKKQAMTLEDIKHVQALVAQYDGVGAAKQLAQDYTDRALTLIQQLPV-GSAQQSL 322 (334)
T ss_dssp HHTTCCCHHHHHHGGGSHHHHHHHHTTGGGCCHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTSCS-SHHHHHH
T ss_pred cccCchhHHHHHHHHhCcHHHHHHHhcCCCCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHhCCC-cHHHHHH
Confidence 99999999987655 58999999999999999999998 6789999
Q ss_pred HHHHHHHHhccc
Q 019903 317 YSFIDYAADREF 328 (334)
Q Consensus 317 ~~l~~~~~~R~~ 328 (334)
.+|++++++|++
T Consensus 323 ~~l~~~~~~R~~ 334 (334)
T 3pko_A 323 EQLTRLLLRRDH 334 (334)
T ss_dssp HHHHHHHTTCC-
T ss_pred HHHHHHHHhccC
Confidence 999999999974
No 27
>3nf2_A Putative polyprenyl synthetase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; 2.20A {Streptomyces coelicolor}
Probab=100.00 E-value=3.4e-58 Score=443.70 Aligned_cols=277 Identities=26% Similarity=0.345 Sum_probs=241.2
Q ss_pred cHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHhhh----------cCCCCcchHHHHHHHHHHhCCCchhhHHHHHH
Q 019903 41 DLKTYWTTLITEIDQNLEKAITVKYPEQIYESMRYSVL----------AKGTKRAPPVMCVAACELFGVNRIAAFPTACA 110 (334)
Q Consensus 41 ~~~~~~~~~~~~i~~~L~~~~~~~~~~~l~~~~~y~~~----------~~gGKrlRp~l~ll~~~~~g~~~~~~~~lA~a 110 (334)
+..+++....+.|+..|++.+....| .+.++..|.+. ..||||+||+|++++++++|++++.++++|++
T Consensus 4 ~~~~~l~~~~~~v~~~l~~~v~~~~~-~l~~~~~y~~~~~~~~~~~~~~~gGKrlRp~l~ll~~~~~g~~~~~~~~~A~a 82 (352)
T 3nf2_A 4 DVTALLERGRTLATPVLRAAVDRLAP-PMDTVAAYHFGWIDAQGNPADGDGGKAVRPALAVLSAEVTGAAPEVGVPGAVA 82 (352)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTSCT-THHHHHHHHTTSBCTTSCBCCCCCCCCHHHHHHHHHHHTTTCCGGGGHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHcccCh-HHHHHHHHHhcccccccccCcCCCcccHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 35678999999999999999987654 69999999861 35999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCCCCCCCCCCCCCCCcCChHHHHHHHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHhh
Q 019903 111 LEMVHAASLIHDDLPCMDDDPSRRGQPSNHTVYGVDIAILAGDALFPLGFQHIVSHTPPHLVPEPRVLRVIAEIARAVGS 190 (334)
Q Consensus 111 vEliH~asLIhDDIp~iD~s~~RRG~pt~h~~~G~~~Avl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~ 190 (334)
+||||++||||||| ||+|++|||+||+|++||+++|||+||||++.+|+.+++.. .+...+++..+++++
T Consensus 83 vEliH~asLiHDDI--~D~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~------~~~~~~~~~~~~~~~-- 152 (352)
T 3nf2_A 83 VELVHNFSLLHDDL--MDGDEQRRHRDTVWKVHGPAQAILVGDALFALANEVLLELG------TVEAGRATRRLTKAS-- 152 (352)
T ss_dssp HHHHHHHHHHHHHH--HHTCCEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHTTC------SHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHcCC--CCCCCCCCCCccHHHhcChHHHHHHHHHHHHHHHHHHHhCC------CchHHHHHHHHHHHH--
Confidence 99999999999999 99999999999999999999999999999999999998853 221223444444433
Q ss_pred hhhhhHhhhhccC------ChhHHHHHHHhhHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHhhHhhhhcC
Q 019903 191 TGMAAGQFLDLEG------EPNLVEFVQEKKFGEMSECSAVCGGFLAGADDDEIQSLRRYGRAVGVLYQVVDDILEAKAQ 264 (334)
Q Consensus 191 ~~~~~GQ~lDl~~------~~~~y~~i~~~KTa~Lf~~a~~lGa~lag~~~~~~~~l~~~G~~lG~afQi~DD~lD~~~~ 264 (334)
.+++.||.+|+.+ +.++|..|+.+|||+||++||++|++++|++++.++.+++||.++|+||||+||++|++++
T Consensus 153 ~~l~~GQ~~dl~~~~~~~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQi~DD~ld~~gd 232 (352)
T 3nf2_A 153 RSLIDGQAQDISYEHRDRVSVEECLEMEGNKTGALLACASSIGAVLGGADERTADTLEKYGYHLGLAFQAVDDLLGIWGD 232 (352)
T ss_dssp HHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHcccCCCCCHHHHHHHHHcccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 4689999999864 6789999999999999999999999999999999999999999999999999999999987
Q ss_pred C----CCCchHHhhcCchHHHHh--------------------------------------------HHHHHHHHHHHHH
Q 019903 265 T----PRDEEKKKKKGKSYVAFY--------------------------------------------GVEKAMEVAEELR 296 (334)
Q Consensus 265 ~----~~~~~Dl~~~k~t~~~~~--------------------------------------------gle~a~~~a~~~~ 296 (334)
+ +..++|+.+||+|+|.++ +++++++++++|.
T Consensus 233 ~~~~GK~~g~Dl~egK~Tlpvi~al~~~~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~li~~~g~~~~a~~~a~~~~ 312 (352)
T 3nf2_A 233 PDATGKQTWSDLRQRKKSLPVVAALAAGGAASERLGEILTADAKASDFANFSEEEFAARAALIEEAGGREWTADEARRQH 312 (352)
T ss_dssp HHHHSSCTTHHHHTTCCCHHHHHHHHHCSHHHHHHHHHHHHHHTCTTGGGCCHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred hhhhCCCcCcccccCCccHHHHHHHHhCChHHHHHHHHHhccccccccCCCCHHHHHHHHHHHHHCCcHHHHHHHHHHHH
Confidence 4 446899999999987432 3677888899999
Q ss_pred HHHHHHHhhccCCCCChHHHHHHHHHHHhccc
Q 019903 297 AKAKEELDRFKKYGDNVLPLYSFIDYAADREF 328 (334)
Q Consensus 297 ~~A~~~L~~lp~~~~~~~~L~~l~~~~~~R~~ 328 (334)
++|++.|+.+|.+++.++.|..|++|+++|..
T Consensus 313 ~~A~~~L~~lp~~~~~r~~L~~la~~~~~R~~ 344 (352)
T 3nf2_A 313 TIAIEALDAVDMPDRVRDRFTALADFVVVRKR 344 (352)
T ss_dssp HHHHHHHTTSCCCHHHHHHHHHHHHHHCC---
T ss_pred HHHHHHHHhCCCCcHHHHHHHHHHHHHHhccc
Confidence 99999999998645789999999999999964
No 28
>3apz_A Geranyl diphosphate synthase; prenyltransferase, all alpha-helices fold, chroloplast, TRAN isoprenoid biosynthetic process; 2.60A {Arabidopsis thaliana} PDB: 3aq0_A*
Probab=100.00 E-value=3.6e-58 Score=443.76 Aligned_cols=268 Identities=20% Similarity=0.303 Sum_probs=211.2
Q ss_pred HHHHHHHHHHHHHHHhhccCCchhHHHHHHHhhhcCC--CCcchHHHHHHHHHHhCCCc-----------------hhhH
Q 019903 45 YWTTLITEIDQNLEKAITVKYPEQIYESMRYSVLAKG--TKRAPPVMCVAACELFGVNR-----------------IAAF 105 (334)
Q Consensus 45 ~~~~~~~~i~~~L~~~~~~~~~~~l~~~~~y~~~~~g--GKrlRp~l~ll~~~~~g~~~-----------------~~~~ 105 (334)
.+...++.|++.|++.+....| .+.++++|.+.. | |||+||.|++++++++|++. +.++
T Consensus 13 ~i~~~l~~v~~~l~~~~~~~~~-~l~~~~~y~~~~-g~~GKrlRp~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (348)
T 3apz_A 13 LVADELSLLSNKLREMVLAEVP-KLASAAEYFFKR-GVQGKQFRSTILLLMATALDVRVPEALIGESTDIVTSELRVRQR 90 (348)
T ss_dssp TTHHHHHHHHHGGGGCCCCCCC--------------CCHHHHHHHHHHHHHHTTSCC--------------CHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccCCh-hHHHHHHHHHhC-CCCCccHHHHHHHHHHHHcCCCCccccccccccccccchhHHHH
Confidence 4556678899999998877655 599999998864 6 99999999999999998642 2468
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCCcCChHHHHHHHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHH
Q 019903 106 PTACALEMVHAASLIHDDLPCMDDDPSRRGQPSNHTVYGVDIAILAGDALFPLGFQHIVSHTPPHLVPEPRVLRVIAEIA 185 (334)
Q Consensus 106 ~lA~avEliH~asLIhDDIp~iD~s~~RRG~pt~h~~~G~~~Avl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~l~~~~~ 185 (334)
.+|+++||||+|||||||| ||+|++|||+||+|.+||+++|||+||||++.||+.+++.. ...+++++....
T Consensus 91 ~~A~avEliH~asLiHDDi--~D~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~------~~~~~~~~~~~~ 162 (348)
T 3apz_A 91 GIAEITEMIHVASLLHDDV--LDDADTRRGVGSLNVVMGNKMSVLAGDFLLSRACGALAALK------NTEVVALLATAV 162 (348)
T ss_dssp HHHHHHHHHHHHHHHHHHC------------------CCHHHHHHHHHHHHHHHHHHHHHTT------CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccc--cCCCCCCCCCCcHHHHhCchHHHHHHHHHHHHHHHHHHhCC------CHHHHHHHHHHH
Confidence 8999999999999999999 99999999999999999999999999999999999998742 345555555543
Q ss_pred HHHhhhhhhhHhhhhccC------ChhHHHHHHHhhHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHhhHh
Q 019903 186 RAVGSTGMAAGQFLDLEG------EPNLVEFVQEKKFGEMSECSAVCGGFLAGADDDEIQSLRRYGRAVGVLYQVVDDIL 259 (334)
Q Consensus 186 ~~~~~~~~~~GQ~lDl~~------~~~~y~~i~~~KTa~Lf~~a~~lGa~lag~~~~~~~~l~~~G~~lG~afQi~DD~l 259 (334)
.+++.||.+|+.+ +.++|.+|+.+|||+||++||++|++++|++++..+.+++||.++|+||||+||++
T Consensus 163 -----~~~~~GQ~~dl~~~~~~~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQi~DD~l 237 (348)
T 3apz_A 163 -----EHLVTGETMEITSSTEQRYSMDYYMQKTYYKTASLISNSCKAVAVLTGQTAEVAVLAFEYGRNLGLAFQLIDDIL 237 (348)
T ss_dssp -----HHHHHHHHHHHTCCHHHHTCHHHHHHHHHHHHTHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHhccCCCCCHHHHHHHHHcchHHHHHHHHHHHHHHcCcCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4689999999986 66889999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCC----CCchHHhhcCchHHHHh---------------------------------HHHHHHHHHHHHHHHHHHH
Q 019903 260 EAKAQTP----RDEEKKKKKGKSYVAFY---------------------------------GVEKAMEVAEELRAKAKEE 302 (334)
Q Consensus 260 D~~~~~~----~~~~Dl~~~k~t~~~~~---------------------------------gle~a~~~a~~~~~~A~~~ 302 (334)
|++++++ ..++|+++||.|+|.++ +++++++++++|.++|++.
T Consensus 238 D~~gd~~~~GK~~g~Dl~egK~Tlp~l~al~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~g~l~~a~~~~~~~~~~A~~~ 317 (348)
T 3apz_A 238 DFTGTSASLGKGSLSDIRHGVITAPILFAMEEFPQLREVVDQVEKDPRNVDIALEYLGKSKGIQRARELAMEHANLAAAA 317 (348)
T ss_dssp HHHTTTTCTTCSCCHHHHTTCCCHHHHHHHHHCTTHHHHHHTTTTCTHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHH
T ss_pred hccCChhhcCCcchhhHhCCChhHHHHHHHHcCHHHHHHHHhccCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHH
Confidence 9998764 35799999999999877 7899999999999999999
Q ss_pred HhhccCCCC------ChHHHHHHHHHHHhccc
Q 019903 303 LDRFKKYGD------NVLPLYSFIDYAADREF 328 (334)
Q Consensus 303 L~~lp~~~~------~~~~L~~l~~~~~~R~~ 328 (334)
|+.||. ++ .++.|..|++++++|.+
T Consensus 318 L~~l~~-~~~~~~~~~~~~L~~l~~~~~~R~~ 348 (348)
T 3apz_A 318 IGSLPE-TDNEDVKRSRRALIDLTHRVITRNK 348 (348)
T ss_dssp HTTSCC-CCCHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHcCCC-CcccccHHHHHHHHHHHHHHHhCcC
Confidence 999997 44 58899999999999974
No 29
>1wmw_A Geranylgeranyl diphosphate synthetase; GGPP, prenyl diphosphate synthase, structural genom riken structural genomics/proteomics initiative; 1.55A {Thermus thermophilus}
Probab=100.00 E-value=7.7e-57 Score=431.57 Aligned_cols=268 Identities=21% Similarity=0.236 Sum_probs=231.1
Q ss_pred HHHHHHHHHHHHhhccCCchhHHHHHHHhhhcCCCCcchHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHhCCCCC
Q 019903 48 TLITEIDQNLEKAITVKYPEQIYESMRYSVLAKGTKRAPPVMCVAACELFGVNRIAAFPTACALEMVHAASLIHDDLPCM 127 (334)
Q Consensus 48 ~~~~~i~~~L~~~~~~~~~~~l~~~~~y~~~~~gGKrlRp~l~ll~~~~~g~~~~~~~~lA~avEliH~asLIhDDIp~i 127 (334)
...+.|++.|.+.+... ++.+.++++|++.. ||||+||.|++++++++|++.+.++.+|+++||||+|||||||| |
T Consensus 7 ~~~~~v~~~l~~~~~~~-~~~l~~~~~~~~~~-gGKrlRp~l~l~~~~~~~~~~~~~~~~A~avEliH~asLihDDi--~ 82 (330)
T 1wmw_A 7 AIRQALQERLLARLDHP-DPLYRDLLQDYPRR-GGKMLRGLLTVYSALAHGAPLEAGLEAATALELFQNWVLVHDDI--E 82 (330)
T ss_dssp HHHHHHHHHHHHHTCCS-SHHHHHHHHHHHHT-CCCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHH--H
T ss_pred HHHHHHHHHHHHHhccc-cHHHHHHHHHHHhC-CCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHccc--c
Confidence 34567888888888654 45799999998764 99999999999999999998888999999999999999999999 9
Q ss_pred CCCCCCCCCCCCCCcCChHHHHHHHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHhhhhhhhHhhhhccC----
Q 019903 128 DDDPSRRGQPSNHTVYGVDIAILAGDALFPLGFQHIVSHTPPHLVPEPRVLRVIAEIARAVGSTGMAAGQFLDLEG---- 203 (334)
Q Consensus 128 D~s~~RRG~pt~h~~~G~~~Avl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~GQ~lDl~~---- 203 (334)
|+|++|||+||+|.+||+++|||+||||++.||+++++....+ .+...+++++.+.. .+++.||.+|+.+
T Consensus 83 D~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~~~~-~~~~~~~~~~~~~~-----~~~~~GQ~~dl~~~~~~ 156 (330)
T 1wmw_A 83 DGSEERRGRPALHRLHPMPLALNAGDAMHAEMWGLLAEGLARG-LFPPEVLLEFHEVV-----RRTAYGQHLDLLWTLGG 156 (330)
T ss_dssp HTCCEETTEECHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTT-SSCHHHHHHHHHHH-----HHHHHHHHHHHHHHHSS
T ss_pred cCCCCCCCCCccccccCchHHHHHHHHHHHHHHHHHHhccccc-ccHHHHHHHHHHHH-----HHHHHHHHHHHHhcccC
Confidence 9999999999999999999999999999999999998753110 22345555555543 4689999999854
Q ss_pred ----ChhHHHHHHHhhHHHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHhhHhhhhcCCC---CCchHHhhc
Q 019903 204 ----EPNLVEFVQEKKFGEM-SECSAVCGGFLAGADDDEIQSLRRYGRAVGVLYQVVDDILEAKAQTP---RDEEKKKKK 275 (334)
Q Consensus 204 ----~~~~y~~i~~~KTa~L-f~~a~~lGa~lag~~~~~~~~l~~~G~~lG~afQi~DD~lD~~~~~~---~~~~Dl~~~ 275 (334)
+.++|.+|+.+|||+| |++||++|++++|++++.+ +++||.++|+||||+||++|++++++ ..++|+.+|
T Consensus 157 ~~~~~~~~y~~~i~~KTa~Ls~~~~~~~ga~lag~~~~~~--l~~~g~~lG~aFQi~DD~ld~~~d~~~GK~~g~Dl~eg 234 (330)
T 1wmw_A 157 TFDLRPEDYFRMVAHKAAYYTAVAPLRLGALLAGKTPPAA--YEEGGLRLGTAFQIVDDVLNLEGGEAYGKERAGDLYEG 234 (330)
T ss_dssp SCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTCCCCHH--HHHHHHHHHHHHHHHHHHHHHSCSCCCSSSTTHHHHHT
T ss_pred CCCCCHHHHHHHHHccccHHHHHHHHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHccCcccCCcccCCCcCchhhCC
Confidence 5689999999999999 9999999999999988776 99999999999999999999998753 356999999
Q ss_pred CchHHHHhH----------------------------------------HHHHHHHHHHHHHHHHHHHh----hccCCCC
Q 019903 276 GKSYVAFYG----------------------------------------VEKAMEVAEELRAKAKEELD----RFKKYGD 311 (334)
Q Consensus 276 k~t~~~~~g----------------------------------------le~a~~~a~~~~~~A~~~L~----~lp~~~~ 311 (334)
|.|||.+++ ++++++++++|.++|++.|+ .+|. ++
T Consensus 235 K~T~p~i~al~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~a~~~~~~~~~~A~~~L~~~i~~lp~-~~ 313 (330)
T 1wmw_A 235 KRTLILLRFLEEAPPEERARALALLALPREAKPEAEVGWLLERLLASRALAWAKAEAKRLQAEGLALLEAAFQDLPG-KE 313 (330)
T ss_dssp CCCHHHHHHHHHSCHHHHHHHHHHHTSCGGGSCHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHTGGGGCSC-HH
T ss_pred CCCHHHHHHHHhCCHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHhhcCCC-cH
Confidence 999986543 35667789999999999999 9987 67
Q ss_pred ChHHHHHHHHHHHhccc
Q 019903 312 NVLPLYSFIDYAADREF 328 (334)
Q Consensus 312 ~~~~L~~l~~~~~~R~~ 328 (334)
.++.|..+++++++|.+
T Consensus 314 ~~~~L~~l~~~~~~R~~ 330 (330)
T 1wmw_A 314 ALDHLRGLLAALVERRA 330 (330)
T ss_dssp HHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHhccC
Confidence 88999999999999974
No 30
>3lk5_A Geranylgeranyl pyrophosphate synthase; structural genomics, protein structure initiative, geranylge pyrophosphate synthase; 1.90A {Corynebacterium glutamicum} PDB: 3qqv_A*
Probab=100.00 E-value=3.9e-55 Score=426.00 Aligned_cols=253 Identities=23% Similarity=0.313 Sum_probs=204.9
Q ss_pred hHHHHHHHhhhcCCCCcchHHHHHHHHHHhCCC------chhhHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCC
Q 019903 68 QIYESMRYSVLAKGTKRAPPVMCVAACELFGVN------RIAAFPTACALEMVHAASLIHDDLPCMDDDPSRRGQPSNHT 141 (334)
Q Consensus 68 ~l~~~~~y~~~~~gGKrlRp~l~ll~~~~~g~~------~~~~~~lA~avEliH~asLIhDDIp~iD~s~~RRG~pt~h~ 141 (334)
.+.+.+.|++.. ||||+||+|++++++++|++ .+.++.+|+++||||++||||||| ||+|++|||+||+|+
T Consensus 49 ~l~~~~~~~~~~-gGKrlRp~l~l~~~~~~g~~~~~~~~~~~~~~~AaaiEliH~asLIHDDI--mD~s~~RRG~pt~h~ 125 (380)
T 3lk5_A 49 DAVAHLRSFVLN-GGKRIRPLYAWAGFLAAQGHKNSSEKLESVLDAAASLEFIQACALIHDDI--IDSSDTRRGAPTVHR 125 (380)
T ss_dssp HHHHHHHHHHHS-CCCCHHHHHHHHHHHHHHTTSCCSSCHHHHHHHHHHHHHHHHHHHHHHHH--HTC------------
T ss_pred HHHHHHHHHHhC-CCcchhHHHHHHHHHHcCCCccccCCHHHHHHHHHHHHHHHHHHHHHCCC--cCCCCCCCCCcchhH
Confidence 477888887774 99999999999999999874 578999999999999999999999 999999999999999
Q ss_pred c----------------CChHHHHHHHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHhhhhhhhHhhhhccC--
Q 019903 142 V----------------YGVDIAILAGDALFPLGFQHIVSHTPPHLVPEPRVLRVIAEIARAVGSTGMAAGQFLDLEG-- 203 (334)
Q Consensus 142 ~----------------~G~~~Avl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~GQ~lDl~~-- 203 (334)
+ ||+++|||+||||++.+++++++.. .+.+...+++..+.... .+++.||.+|+.+
T Consensus 126 ~f~~~~~~~~~~~~~~~~G~~~AIL~GD~Ll~~A~~~l~~~~----~~~~~~~~~~~~~~~~~--~~~~~GQ~lDl~~~~ 199 (380)
T 3lk5_A 126 AVEADHRANNFEGDPEHFGVSVSILAGDMALVWAEDMLQDSG----LSAEALARTRDAWRGMR--TEVIGGQLLDIYLES 199 (380)
T ss_dssp -----------------CHHHHHHHHHHHHHHHHHHHHHTSC----CCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH
T ss_pred HHHHhhhhcccccchhhcCHHHHHHHHHHHHHHHHHHHHHcC----CCHHHHHHHHHHHHHHH--HHHHHHHHHHHHhcc
Confidence 7 6999999999999999999998754 33444444444443322 4689999999875
Q ss_pred ----ChhHHHHHHHhhHHHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHhhHhhhhcCC----CCCchHHhh
Q 019903 204 ----EPNLVEFVQEKKFGEM-SECSAVCGGFLAGADDDEIQSLRRYGRAVGVLYQVVDDILEAKAQT----PRDEEKKKK 274 (334)
Q Consensus 204 ----~~~~y~~i~~~KTa~L-f~~a~~lGa~lag~~~~~~~~l~~~G~~lG~afQi~DD~lD~~~~~----~~~~~Dl~~ 274 (334)
+.+.|.+|+.+|||+| |++||++|++++|++++.++.+++||.++|+||||+||++|+++++ +..++|+++
T Consensus 200 ~~~~s~~~y~~ii~~KTa~L~~~~~~~~Ga~laga~~~~~~~l~~~G~~lG~AFQI~DDiLd~~gd~~~~GK~~g~Dl~e 279 (380)
T 3lk5_A 200 HANESVELADSVNRFKTAAYTIARPLHLGASIAGGSPQLIDALLHYGHDIGIAFQLRDDLLGVFGDPAITGKPAGDDIRE 279 (380)
T ss_dssp TTCCCHHHHHHHHHHHTHHHHTHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHSSCTTHHHHT
T ss_pred CCCCCHHHHHHHHHhhchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhhhCCCchhhHhc
Confidence 6789999999999999 8999999999999999999999999999999999999999999874 446899999
Q ss_pred cCchHHHHh----------------------------------------HHHHHHHHHHHHHHHHHHHHhhccCCCCChH
Q 019903 275 KGKSYVAFY----------------------------------------GVEKAMEVAEELRAKAKEELDRFKKYGDNVL 314 (334)
Q Consensus 275 ~k~t~~~~~----------------------------------------gle~a~~~a~~~~~~A~~~L~~lp~~~~~~~ 314 (334)
||.|+|.++ +++++++++++|.++|++.|+.+|.+++.++
T Consensus 280 gK~T~p~i~al~~~~~~~~~~~~~L~~~l~~~~~~~~~~~v~~li~~~Ga~~~~~~~~~~~~~~A~~~L~~lp~~~~~r~ 359 (380)
T 3lk5_A 280 GKRTVLLALALQRADKQSPEAATAIRAGVGKVTSPEDIAVITEHIRATGAEEEVEQRISQLTESGLAHLDDVDIPDEVRA 359 (380)
T ss_dssp TCCCHHHHHHHHHHHHHCHHHHHHHHHHTTTCCSHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHGGGSCCCHHHHH
T ss_pred CCchHHHHHHHHhCccCChHHHHHHHHHHCCCCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHhCCCChHHHH
Confidence 999987542 4677888999999999999999995356899
Q ss_pred HHHHHHHHHHhcccc
Q 019903 315 PLYSFIDYAADREFS 329 (334)
Q Consensus 315 ~L~~l~~~~~~R~~~ 329 (334)
.|.+|++++..|..+
T Consensus 360 ~L~~La~~~~~~~~~ 374 (380)
T 3lk5_A 360 QLRALAIRSTERREG 374 (380)
T ss_dssp HHHHHHHHHHC----
T ss_pred HHHHHHHHHHHhhcc
Confidence 999999999998643
No 31
>3kra_B Geranyl diphosphate synthase small subunit; prenyltransferase, isoprene biosynthesis, isoprenyl pyrophosphate synthase, transferase; 1.90A {Mentha x piperita} PDB: 3krc_B* 3krf_B* 3kro_B* 3krp_B* 3oab_B* 3oac_B*
Probab=100.00 E-value=1.3e-54 Score=405.76 Aligned_cols=251 Identities=34% Similarity=0.616 Sum_probs=219.3
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHhhhcCCCCcchHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHh
Q 019903 43 KTYWTTLITEIDQNLEKAITVKYPEQIYESMRYSVLAKGTKRAPPVMCVAACELFGVNRIAAFPTACALEMVHAASLIHD 122 (334)
Q Consensus 43 ~~~~~~~~~~i~~~L~~~~~~~~~~~l~~~~~y~~~~~gGKrlRp~l~ll~~~~~g~~~~~~~~lA~avEliH~asLIhD 122 (334)
++||+...+.|++.|.+.++...|..+.++++|++.. ||||+||.|++++++++|++++.++++|++|||||+||||||
T Consensus 2 ~~~~~~~~~~ie~~L~~~l~~~~p~~l~~~~~y~~~~-gGKrlRP~L~l~~~~~~g~~~~~~~~~A~aiEliH~aSLIHD 80 (274)
T 3kra_B 2 QPYWAAIEADIERYLKKSITIRPPETVFGPMHHLTFA-APATAASTLCLAACELVGGDRSQAMAAAAAIHLVHAAAYVHE 80 (274)
T ss_dssp CHHHHHHHHHHHHHHHHHCCCCSSHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHTTCCGGGGHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHcccCCcHHHHHHHHHHHhC-CCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHc
Confidence 4689999999999999999887776799999999875 999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCCCCcCChHHHHHHHHHHHHHHHHHHHhcCCCC-CCChHHHHHHHHHHHHHHhhhhhhhHhhhhc
Q 019903 123 DLPCMDDDPSRRGQPSNHTVYGVDIAILAGDALFPLGFQHIVSHTPPH-LVPEPRVLRVIAEIARAVGSTGMAAGQFLDL 201 (334)
Q Consensus 123 DIp~iD~s~~RRG~pt~h~~~G~~~Avl~GD~L~~~a~~~l~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~GQ~lDl 201 (334)
||||+|++ +|||+||+|++||+++|||+||+|++.||+.+++..... ..+...+++++.++++++|..+++.||.+|+
T Consensus 81 DI~~dD~d-~RRG~pt~h~~~G~~~AIlaGD~Ll~~Af~~l~~~~~~~~~~~~~~~~~~~~~l~~a~G~~~~~~GQ~lDl 159 (274)
T 3kra_B 81 HLPLTDGS-RPVSKPAIQHKYGPNVELLTGDGIVPFGFELLAGSVDPARTDDPDRILRVIIEISRAGGPEGMISGLHREE 159 (274)
T ss_dssp TCCCSSSS-SCCCSSCCCCSSCHHHHHHHHHHHHHHHHHHHHHTCCTTCTTHHHHHHHHHHHHHHHTSTTTHHHHHHHHT
T ss_pred CCcccCCc-cCCCCCCchhhcChHHHHHHHHHHHHHHHHHHHhcCCccccccHHHHHHHHHHHHHHHhHHHHHHhHHHHH
Confidence 99655665 699999999999999999999999999999999864210 0123467888888888888788999999999
Q ss_pred cC-----ChhHHHHHHHhhHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHhhHhhhhcCCCCCchHHhhcC
Q 019903 202 EG-----EPNLVEFVQEKKFGEMSECSAVCGGFLAGADDDEIQSLRRYGRAVGVLYQVVDDILEAKAQTPRDEEKKKKKG 276 (334)
Q Consensus 202 ~~-----~~~~y~~i~~~KTa~Lf~~a~~lGa~lag~~~~~~~~l~~~G~~lG~afQi~DD~lD~~~~~~~~~~Dl~~~k 276 (334)
.+ +.++|.+|+++|||+||++||++|++++|++++.++.+++||+++|++|||+||. +.
T Consensus 160 ~~~~~~~t~~~y~~~i~~KTa~L~~~a~~lGailaga~~~~~~~l~~~G~~lG~aFQI~DD~--~~-------------- 223 (274)
T 3kra_B 160 EIVDGNTSLDFIEYVCKKKYGEMHACGAACGAILGGAAEEEIQKLRNFGLYQGTLRGMMEMK--NS-------------- 223 (274)
T ss_dssp TCCTTSSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHT--TT--------------
T ss_pred hccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhh--cc--------------
Confidence 86 5689999999999999999999999999999999999999999999999999997 11
Q ss_pred chHHHHhHHHHHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHH
Q 019903 277 KSYVAFYGVEKAMEVAEELRAKAKEELDRFKKYGDNVLPLYSFI 320 (334)
Q Consensus 277 ~t~~~~~gle~a~~~a~~~~~~A~~~L~~lp~~~~~~~~L~~l~ 320 (334)
+.+++.++++++.++|++.|+.||. +....|..++
T Consensus 224 -------~~~~~~~~~~~~~~~A~~~L~~~~~--~~~~pl~~~~ 258 (274)
T 3kra_B 224 -------HQLIDENIIGKLKELALEELGGFHG--KNAELMSSLV 258 (274)
T ss_dssp -------SCCCCHHHHHHHHHHHHHHHTTSCS--SHHHHTGGGG
T ss_pred -------ccHHHHHHHHHHHHHHHHHHHcCCc--hhhhhHHHHH
Confidence 1245678999999999999999985 4444554443
No 32
>3tc1_A Octaprenyl pyrophosphate synthase; all alpha-helices fold, transferase; 2.00A {Helicobacter pylori}
Probab=100.00 E-value=4.8e-55 Score=415.92 Aligned_cols=256 Identities=18% Similarity=0.206 Sum_probs=200.8
Q ss_pred HHHHHHHHHHHHhhccCCchhHHHHHHHhhhcCCCCcchHHHHHHHHHHhCCCc--hhhHHHHHHHHHHHHHHHHHhCCC
Q 019903 48 TLITEIDQNLEKAITVKYPEQIYESMRYSVLAKGTKRAPPVMCVAACELFGVNR--IAAFPTACALEMVHAASLIHDDLP 125 (334)
Q Consensus 48 ~~~~~i~~~L~~~~~~~~~~~l~~~~~y~~~~~gGKrlRp~l~ll~~~~~g~~~--~~~~~lA~avEliH~asLIhDDIp 125 (334)
+.++.|++.|.+.++...++.+.+ .|.+. .||||+||.|++++++..+... +++.++|+++||||+||||||||
T Consensus 4 ~~~~~i~~~l~~~~~~~~~~~~~~--~y~~~-~gGKrlRp~l~l~~~~~~~~~~~~~~~~~~A~aiEliH~asLiHDDi- 79 (315)
T 3tc1_A 4 KQLKAIQNKIASWIKEIESGFIDE--LFSKI-GPSKMLRSKLMLALLNEKTDAILLDKALNLCTIVEMIQTASLLHDDV- 79 (315)
T ss_dssp HHHHHHHHHHHHHHHTTCCHHHHH--HHTTC-CCCCCHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHHHHHhhcCcHHHHH--HHHhc-CCcccHHHHHHHHHhccCccccchhhHHHHHHHHHHHHHHHHHHcCC-
Confidence 446788888888886433333444 57766 4999999999999988433222 56779999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCcCChHHHHHHHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHhhhhhhhHhhhhccC--
Q 019903 126 CMDDDPSRRGQPSNHTVYGVDIAILAGDALFPLGFQHIVSHTPPHLVPEPRVLRVIAEIARAVGSTGMAAGQFLDLEG-- 203 (334)
Q Consensus 126 ~iD~s~~RRG~pt~h~~~G~~~Avl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~GQ~lDl~~-- 203 (334)
||+|++|||+||+|++||+++|||+||||++.||+.+++. + ..+++++.+.. .+++.||.+|+.+
T Consensus 80 -~D~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~------~-~~~~~~~~~~~-----~~~~~GQ~~dl~~~~ 146 (315)
T 3tc1_A 80 -IDKATMRRKLPSINALFGNFNAVMLGDVFYSKAFFELSKM------G-ELIAQALSNAV-----LRLSRGEIEDVFVGE 146 (315)
T ss_dssp -C----------------CCSHHHHHHHHHHHHHHHHHTTS------C-HHHHHHHHHHH-----HHHHHHHHHHHHHTT
T ss_pred -CCCCCCcCCCccHHHHhCchHHHHHHHHHHHHHHHHHHHC------c-HHHHHHHHHHH-----HHHHHHHHHHHHcCC
Confidence 9999999999999999999999999999999999999864 2 34555554443 4689999999865
Q ss_pred ----ChhHHHHHHHhhHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHhhHhhhhcCCC----CCchHHhhc
Q 019903 204 ----EPNLVEFVQEKKFGEMSECSAVCGGFLAGADDDEIQSLRRYGRAVGVLYQVVDDILEAKAQTP----RDEEKKKKK 275 (334)
Q Consensus 204 ----~~~~y~~i~~~KTa~Lf~~a~~lGa~lag~~~~~~~~l~~~G~~lG~afQi~DD~lD~~~~~~----~~~~Dl~~~ 275 (334)
+.++|..|+.+|||+||++||++|++++|++ .+.+++||.++|+||||+||++|++++++ ..++|+.+|
T Consensus 147 ~~~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~~---~~~l~~~g~~lG~aFQI~DD~ld~~~d~~~~GK~~g~Dl~eg 223 (315)
T 3tc1_A 147 CFNSDKQKYWRILEDKTAHFIEASLKSMAILLNKD---AKIYADFGLNFGMAFQIIDDLLDITQDAKTLGKPNFSDFKEG 223 (315)
T ss_dssp SCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSC---HHHHHHHHHHHHHHHHHHHHHHTTSCCTTCCCCCCCCTGGGT
T ss_pred CCCCCHHHHHHHHhcchHHHHHHHHHHHHHHcCCC---HHHHHHHHHHHHHHHHHHHHHhcccCCHHHhCCChhhHHHcC
Confidence 6789999999999999999999999999998 57999999999999999999999998764 357899999
Q ss_pred CchHHHHh------------------------------------HHHHHHHHHHHHHHHHHHHHhhccCCCCChHHHHHH
Q 019903 276 GKSYVAFY------------------------------------GVEKAMEVAEELRAKAKEELDRFKKYGDNVLPLYSF 319 (334)
Q Consensus 276 k~t~~~~~------------------------------------gle~a~~~a~~~~~~A~~~L~~lp~~~~~~~~L~~l 319 (334)
|.|||.++ +++++++++++|.++|++.|+.||+ ++.++.|..|
T Consensus 224 K~T~p~i~al~~~~~~~~~~L~~~l~~~~~~~~~~i~~li~~~ga~~~~~~~~~~~~~~A~~~L~~lp~-s~~r~~L~~l 302 (315)
T 3tc1_A 224 KTTLPYLLLYEKLNQHDQGLLISYFKQDSHEIIEWTKEKFKQYGIIEETLKTAQVYSKKALEAIKGENN-LILEKLAQDV 302 (315)
T ss_dssp CCCHHHHHHHTTSCHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTTTCC-HHHHHHHHHH
T ss_pred ChhHHHHHHHHhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHhCCC-cHHHHHHHHH
Confidence 99998542 5789999999999999999999998 7889999999
Q ss_pred HHHHH
Q 019903 320 IDYAA 324 (334)
Q Consensus 320 ~~~~~ 324 (334)
++|+.
T Consensus 303 ~~~~~ 307 (315)
T 3tc1_A 303 ISRTF 307 (315)
T ss_dssp HCC--
T ss_pred HHHHH
Confidence 98763
No 33
>2qis_A Farnesyl pyrophosphate synthetase; trans-prenyltransferase, structural genomics, structural GEN consortium, SGC, transferase; HET: RIS; 1.80A {Homo sapiens} PDB: 4dem_F* 1yv5_A* 1yq7_A* 2opm_A* 2opn_A* 3cp6_A* 2rah_A* 2vf6_A* 1zw5_A* 3b7l_A* 3s4j_A* 3rye_A* 3n45_F* 2f89_F* 2f7m_F* 2f8z_F* 2f8c_F* 2f92_F* 2f9k_F* 3n1v_F* ...
Probab=100.00 E-value=1.4e-54 Score=421.99 Aligned_cols=276 Identities=15% Similarity=0.133 Sum_probs=229.8
Q ss_pred cHHHHHHHHHHHHHHHHHHhhcc----CCchhHHHHHHHhhhcCCCCcchHHHHHHHHHHhCCCc----h---hhHHHHH
Q 019903 41 DLKTYWTTLITEIDQNLEKAITV----KYPEQIYESMRYSVLAKGTKRAPPVMCVAACELFGVNR----I---AAFPTAC 109 (334)
Q Consensus 41 ~~~~~~~~~~~~i~~~L~~~~~~----~~~~~l~~~~~y~~~~~gGKrlRp~l~ll~~~~~g~~~----~---~~~~lA~ 109 (334)
.+.+|+......|++.+...++. ..++.+.++++|.+ .||||+||+|++++++++|++. + .+..+|+
T Consensus 34 ~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~l~~~~~y~~--~gGKrlRp~l~l~~~~~~~~~~~~~~~~~~~a~~~A~ 111 (374)
T 2qis_A 34 EKQDFVQHFSQIVRVLTEDEMGHPEIGDAIARLKEVLEYNA--IGGKYNRGLTVVVAFRELVEPRKQDADSLQRAWTVGW 111 (374)
T ss_dssp HHHHHHHHHHHHHHHHHTTC--CGGGHHHHHHHHHHHHHHS--SSSCCHHHHHHHHHHHHHSCGGGCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHhhc--CCCcchHHHHHHHHHHHhCCCCccchHHHHHHHHHHH
Confidence 36667777778888888877553 23457889999876 5999999999999999998752 2 4678999
Q ss_pred HHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCCcCChH-HHHHHHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHH
Q 019903 110 ALEMVHAASLIHDDLPCMDDDPSRRGQPSNHTVYGVD-IAILAGDALFPLGFQHIVSHTPPHLVPEPRVLRVIAEIARAV 188 (334)
Q Consensus 110 avEliH~asLIhDDIp~iD~s~~RRG~pt~h~~~G~~-~Avl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~l~~~~~~~~ 188 (334)
+|||||++||||||| ||+|++|||+||+|++||++ +||++||++++.+|+++++.... ......+++++.+..
T Consensus 112 avEliH~asLIHDDI--mD~s~~RRG~pt~h~~~G~~~~Ai~~g~~l~~~a~~~l~~~~~~-~~~~~~~~~~~~~~~--- 185 (374)
T 2qis_A 112 CVELLQAFFLVADDI--MDSSLTRRGQICWYQKPGVGLDAINDANLLEACIYRLLKLYCRE-QPYYLNLIELFLQSS--- 185 (374)
T ss_dssp HHHHHHHHHHHHHHH--HTTCCEETTEECGGGSTTTGGGHHHHHHHHHHHHHHHHHHHHTT-STTHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHccc--cCCCCCCCCCccHHHhcCchHHHHHHHHHHHHHHHHHHHHhhcc-cccHHHHHHHHHHHH---
Confidence 999999999999999 99999999999999999999 99999999999999999875211 012345666666554
Q ss_pred hhhhhhhHhhhhccC-----------ChhHHHHHHHhhHHHH-HHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHhHH
Q 019903 189 GSTGMAAGQFLDLEG-----------EPNLVEFVQEKKFGEM-SECSAVCGGFLAG-ADDDEIQSLRRYGRAVGVLYQVV 255 (334)
Q Consensus 189 ~~~~~~~GQ~lDl~~-----------~~~~y~~i~~~KTa~L-f~~a~~lGa~lag-~~~~~~~~l~~~G~~lG~afQi~ 255 (334)
.+++.||.+|+.+ +.+.|.+|+.+|||+| |++||++|++++| ++++.++.+++||.++|+||||+
T Consensus 186 --~~~~~GQ~lDl~~~~~~~~d~~~~t~~~y~~i~~~KTa~Lsf~~~~~~ga~lag~a~~~~~~~l~~~g~~lG~aFQI~ 263 (374)
T 2qis_A 186 --YQTEIGQTLDLLTAPQGNVDLVRFTEKRYKSIVKYKSAFYSFYLPIAAAMYMAGIDGEKEHANAKKILLEMGEFFQIQ 263 (374)
T ss_dssp --HHHHHHHHHHHHHSCTTCCCGGGCCHHHHHHHHHHHTHHHHTHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHcccccccccccCCHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 3579999999853 4578999999999999 9999999999999 99999999999999999999999
Q ss_pred hhHhhhhcCC----CCCchHHhhcCchHHHHhHHH------------------------------------HHHHHHHHH
Q 019903 256 DDILEAKAQT----PRDEEKKKKKGKSYVAFYGVE------------------------------------KAMEVAEEL 295 (334)
Q Consensus 256 DD~lD~~~~~----~~~~~Dl~~~k~t~~~~~gle------------------------------------~a~~~a~~~ 295 (334)
||++|+++++ + .|+|+.+||+|||.+++++ +++.++++|
T Consensus 264 DDiLD~~gd~~~~GK-~g~Dl~~gK~T~p~l~al~~a~~~~~~~l~~~~~~~~~~~~~~v~~li~~~g~~~~~~~~~~~~ 342 (374)
T 2qis_A 264 DDYLDLFGDPSVTGK-IGTDIQDNKCSWLVVQCLQRATPEQYQILKENYGQKEAEKVARVKALYEELDLPAVFLQYEEDS 342 (374)
T ss_dssp HHHHHHHSCHHHHCS-CCCTTTTTCCCHHHHHHHHHCCHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHccCChhhcCC-chhHHHcCCccHHHHHHHHhCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCcHHHHHHHHHHH
Confidence 9999999874 4 7899999999999766433 235557889
Q ss_pred HHHHHHHHhhccCCCCChHHHHHHHHHHHhccc
Q 019903 296 RAKAKEELDRFKKYGDNVLPLYSFIDYAADREF 328 (334)
Q Consensus 296 ~~~A~~~L~~lp~~~~~~~~L~~l~~~~~~R~~ 328 (334)
.++|++.|+.||. ++.++.|..+++++.+|.|
T Consensus 343 ~~~a~~~L~~lp~-~~~k~~L~~l~~~i~~R~k 374 (374)
T 2qis_A 343 YSHIMALIEQYAA-PLPPAVFLGLARKIYKRRK 374 (374)
T ss_dssp HHHHHHHHHHHCT-TSCHHHHHHHHHHHC----
T ss_pred HHHHHHHHHhCCC-chHHHHHHHHHHHHHcCcC
Confidence 9999999999998 6789999999999999975
No 34
>1v4e_A Octoprenyl-diphosphate synthase; trans-type prenyltransferase, thermophilic; 2.28A {Thermotoga maritima} SCOP: a.128.1.1 PDB: 1v4j_A 1wkz_A 1vg2_A 1wl3_A 1wl0_A 1wl2_A 1v4h_A 1v4i_A 1v4k_A 2azl_A 1wl1_A 1vg4_A 1vg3_A 1vg6_A 1vg7_A
Probab=100.00 E-value=4.8e-55 Score=413.45 Aligned_cols=242 Identities=20% Similarity=0.272 Sum_probs=208.5
Q ss_pred HHHHHHHHHHHHHHhhccCCchhHHHHHHHhhhcCCCCcchHHHHHHHHHHhCC-CchhhHHHHHHHHHHHHHHHHHhCC
Q 019903 46 WTTLITEIDQNLEKAITVKYPEQIYESMRYSVLAKGTKRAPPVMCVAACELFGV-NRIAAFPTACALEMVHAASLIHDDL 124 (334)
Q Consensus 46 ~~~~~~~i~~~L~~~~~~~~~~~l~~~~~y~~~~~gGKrlRp~l~ll~~~~~g~-~~~~~~~lA~avEliH~asLIhDDI 124 (334)
....++.|++.|++.+....| ++++|.+. .||||+||.|++++++++|+ +.+.+.++|+++||||+||||||||
T Consensus 9 ~~~~l~~v~~~l~~~~~~~~~----~~~~y~~~-~gGKrlRp~l~l~~~~~~g~~~~~~~~~~A~avEliH~asLiHDDi 83 (299)
T 1v4e_A 9 NSYELEKVKERIEQILSQFFP----EQIMKDLP-LYGKMLRVRLSILSFKNRGVEIGEDAISSLAALELVHLASLLHDDV 83 (299)
T ss_dssp CHHHHHHHHHHHHHHHHHHSC----HHHHTTSC-CCCCCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCH----HHHHHHHh-CCCCcHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHHHHhhCCC
Confidence 344567889999888866544 89999876 49999999999999999998 7788999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCCcCChHHHHHHHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHhhhhhhhHhhhhccC-
Q 019903 125 PCMDDDPSRRGQPSNHTVYGVDIAILAGDALFPLGFQHIVSHTPPHLVPEPRVLRVIAEIARAVGSTGMAAGQFLDLEG- 203 (334)
Q Consensus 125 p~iD~s~~RRG~pt~h~~~G~~~Avl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~GQ~lDl~~- 203 (334)
||+|++|||+||+|.+||+++|||+||||++.||+++++.. ...+++++.+.. .+++.||.+|+.+
T Consensus 84 --~D~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~------~~~~~~~~~~~~-----~~~~~GQ~~dl~~~ 150 (299)
T 1v4e_A 84 --IDGARFRRGKETINFMYGDKAAVAAGDLVLVSAFHTVEEIG------NNKLRRAFLNVI-----GKMSEAELIEQLSR 150 (299)
T ss_dssp --HHTCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHH-----HHHHHHHHHHHHHT
T ss_pred --CCCCCCCCCCCchhhhcCHHHHHHHHHHHHHHHHHHHHhCC------hHHHHHHHHHHH-----HHHhhhHHHHHHcc
Confidence 99999999999999999999999999999999999998853 234555555443 4689999999874
Q ss_pred ----ChhHHHHHHHhhHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHhhHhhhhcC---CCCCchHHhhcC
Q 019903 204 ----EPNLVEFVQEKKFGEMSECSAVCGGFLAGADDDEIQSLRRYGRAVGVLYQVVDDILEAKAQ---TPRDEEKKKKKG 276 (334)
Q Consensus 204 ----~~~~y~~i~~~KTa~Lf~~a~~lGa~lag~~~~~~~~l~~~G~~lG~afQi~DD~lD~~~~---~~~~~~Dl~~~k 276 (334)
+.++|.+|+.+|||+||++||++|++++|+++ +.+++||.++|+||||+||++|++++ ++..++|+.+||
T Consensus 151 ~~~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~---~~l~~~g~~lG~aFQi~DD~lD~~~d~~~GK~~g~Dl~egK 227 (299)
T 1v4e_A 151 YKPITKEEYLRIVEGKSGALFGLALQLPALLEGELG---EDLYNLGVTIGTIYQMFDDIMDFAGMEKIGKDGFLDLKNGV 227 (299)
T ss_dssp TSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTCCC---HHHHHHHHHHHHHHHHHHHHHHHTTCCSCCTTSSCCCTTTT
T ss_pred CCCCCHHHHHHHHHhccHHHHHHHHHHHHHHcCCCH---HHHHHHHHHHHHHHHHHHHHHHccCccccCCCcchHhhCCC
Confidence 67899999999999999999999999999887 79999999999999999999999988 223579999999
Q ss_pred chHHHHhH----------------------------HHHHHHHHHHHHHHHHHHHhhccC
Q 019903 277 KSYVAFYG----------------------------VEKAMEVAEELRAKAKEELDRFKK 308 (334)
Q Consensus 277 ~t~~~~~g----------------------------le~a~~~a~~~~~~A~~~L~~lp~ 308 (334)
+|||.+++ ++++++.+++|.++|++.|+.||.
T Consensus 228 ~T~p~l~al~~~~~l~~~l~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~A~~~L~~l~~ 287 (299)
T 1v4e_A 228 ASFPLVTAMEKFPEARQMFENRDWSGLMSFMREKGILKECEETLKVLVKNVIIENSWLRD 287 (299)
T ss_dssp CCHHHHHHHHHCHHHHHHHHTTCHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHCGGGCC
T ss_pred chHHHHHHHHhChHHHHHHhHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 99997654 456666677777777777777765
No 35
>3qkc_B Geranyl diphosphate synthase small subunit; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.20A {Antirrhinum majus}
Probab=100.00 E-value=2.1e-53 Score=397.48 Aligned_cols=251 Identities=30% Similarity=0.563 Sum_probs=220.3
Q ss_pred cHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHhhhcCCCCcchHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHH
Q 019903 41 DLKTYWTTLITEIDQNLEKAITVKYPEQIYESMRYSVLAKGTKRAPPVMCVAACELFGVNRIAAFPTACALEMVHAASLI 120 (334)
Q Consensus 41 ~~~~~~~~~~~~i~~~L~~~~~~~~~~~l~~~~~y~~~~~gGKrlRp~l~ll~~~~~g~~~~~~~~lA~avEliH~asLI 120 (334)
.+.+||....+.|++.|.+.++...|..+.++++|++.. ||||+||+|++++++++|++.+.++++|++|||||+||||
T Consensus 5 ~~~~~~~~~~~~i~~~L~~~~~~~~p~~l~~~~~y~~~~-gGKrlRP~L~l~~~~~~g~~~~~~~~~A~aiEliH~aSLI 83 (273)
T 3qkc_B 5 RTQTYRATIESDIESYLKKAIPIRAPESVFEPMHHLTFA-APRTSASALCVAACELVGGDRSDAMAAAAAVHLMHVAAYT 83 (273)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCCCCSSTTHHHHHHHHHH-SCCCHHHHHHHHHHHHTTCCGGGTHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHhC-CCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHH
Confidence 467899999999999999999877776799999999875 9999999999999999999999999999999999999999
Q ss_pred HhCCCCCCCCCCCCCCCCCCCcCChHHHHHHHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHhhhhhhhHhhhh
Q 019903 121 HDDLPCMDDDPSRRGQPSNHTVYGVDIAILAGDALFPLGFQHIVSHTPPHLVPEPRVLRVIAEIARAVGSTGMAAGQFLD 200 (334)
Q Consensus 121 hDDIp~iD~s~~RRG~pt~h~~~G~~~Avl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~GQ~lD 200 (334)
|||| +|+|. |||+||+|++||+++|||+||+|++.||+++++.......+..++++++.++++++|..+++.||.+|
T Consensus 84 HDDI--~D~d~-RRG~pt~h~~~G~~~AIlaGD~Ll~~Af~~l~~~~~~~~~~~~~~~~~~~~l~~a~g~~~~~~GQ~lD 160 (273)
T 3qkc_B 84 HENL--PLTDG-PMSKSEIQHKFDPNIELLTGDGIIPFGLELMARSMDPTRNNPDRILRAIIELTRVMGSEGIVEGQYHE 160 (273)
T ss_dssp HHSC--CBTTB-CSSSSCCCCSSCHHHHHHHHHHHHHHHHHHHHHHSCSSCCCHHHHHHHHHHHHHHHTTTTHHHHHHHH
T ss_pred HcCc--ccCcc-CCCCCCchhhcCHHHHHHHHHHHHHHHHHHHHHcCCcccccHHHHHHHHHHHHHHhchhHHHHHHHHH
Confidence 9999 78777 99999999999999999999999999999999865321123467788999998888878899999999
Q ss_pred ccC----ChhHHHHHHHhhHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHhhHhhhhcCCCCCchHHhhcC
Q 019903 201 LEG----EPNLVEFVQEKKFGEMSECSAVCGGFLAGADDDEIQSLRRYGRAVGVLYQVVDDILEAKAQTPRDEEKKKKKG 276 (334)
Q Consensus 201 l~~----~~~~y~~i~~~KTa~Lf~~a~~lGa~lag~~~~~~~~l~~~G~~lG~afQi~DD~lD~~~~~~~~~~Dl~~~k 276 (334)
+.+ +.+.|..|+++|||+||++||++|++++|++++.++.+++||.++|++|||+||+++-.
T Consensus 161 l~~~~~~~~eyl~~I~~~KTa~L~~~a~~lGailaga~~~~~~~l~~~G~~lGlaFQI~DD~~~~~-------------- 226 (273)
T 3qkc_B 161 LGLNQLNDLELIEYVCKKKEGTLHACGAACGAILGGCDEDKIEKLRRFGLYVGTVQGLLGKNRSGF-------------- 226 (273)
T ss_dssp TTCCSSCCHHHHHHHHHHTHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHTTCCSTT--------------
T ss_pred HhcCCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhhhch--------------
Confidence 987 33444457799999999999999999999999999999999999999999999996310
Q ss_pred chHHHHhHHHHHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHH
Q 019903 277 KSYVAFYGVEKAMEVAEELRAKAKEELDRFKKYGDNVLPLYSFIDYA 323 (334)
Q Consensus 277 ~t~~~~~gle~a~~~a~~~~~~A~~~L~~lp~~~~~~~~L~~l~~~~ 323 (334)
.++++++.++|++.|..|+. +.-..|..+++|-
T Consensus 227 ------------~~~~~~~~~~a~~~l~~~~~--~~~~~l~~~~~~~ 259 (273)
T 3qkc_B 227 ------------EGRIKELKELAVKELESFGG--EKIELIRGVFELE 259 (273)
T ss_dssp ------------HHHHHHHHHHHHHHHTTCCS--SHHHHHHHHTTC-
T ss_pred ------------HHHHHHHHHHHHHHHHccCc--hhhhHHHHHHHHH
Confidence 27899999999999999985 4556777777664
No 36
>2q80_A Geranylgeranyl pyrophosphate synthetase; isoprenoid pathway, isopentenyl transferase, structural GENO structural genomics consortium, SGC; HET: GRG; 2.70A {Homo sapiens} SCOP: a.128.1.1
Probab=100.00 E-value=1.1e-54 Score=411.60 Aligned_cols=243 Identities=19% Similarity=0.229 Sum_probs=210.6
Q ss_pred hhHHHHHHHhhhcCCCCcchHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCCcCChH
Q 019903 67 EQIYESMRYSVLAKGTKRAPPVMCVAACELFGVNRIAAFPTACALEMVHAASLIHDDLPCMDDDPSRRGQPSNHTVYGVD 146 (334)
Q Consensus 67 ~~l~~~~~y~~~~~gGKrlRp~l~ll~~~~~g~~~~~~~~lA~avEliH~asLIhDDIp~iD~s~~RRG~pt~h~~~G~~ 146 (334)
+.+.++++|.+. .||||+||.|++++++++|++.+.+..+|+++||||+|||||||| ||+|++|||+||+|.+||++
T Consensus 11 ~~l~~~~~y~~~-~gGKr~Rp~l~l~~~~~~~~~~~~~~~~A~avEliH~asLiHDDi--~D~s~~RRG~pt~h~~~G~~ 87 (301)
T 2q80_A 11 RILLEPYKYLLQ-LPGKQVRTKLSQAFNHWLKVPEDKLQIIIEVTEMLHNASLLIDDI--EDNSKLRRGFPVAHSIYGIP 87 (301)
T ss_dssp HHHTHHHHHHTT-SSCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH--HHTCSEETTEECHHHHHCHH
T ss_pred HHHHHHHHHHHh-CCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHccc--cCCCCCCCCCcchhhccCcH
Confidence 468899999886 499999999999999999998888999999999999999999999 99999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHhhhhhhhHhhhhccC-------ChhHHHHHHHhhHHHH
Q 019903 147 IAILAGDALFPLGFQHIVSHTPPHLVPEPRVLRVIAEIARAVGSTGMAAGQFLDLEG-------EPNLVEFVQEKKFGEM 219 (334)
Q Consensus 147 ~Avl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~GQ~lDl~~-------~~~~y~~i~~~KTa~L 219 (334)
+|||+||||++.+|+.+++... +.+.+++.+.. .+++.||.+|+.+ +.++|.+|+.+|||+|
T Consensus 88 ~AIl~GD~l~~~a~~~l~~~~~------~~~~~~~~~~~-----~~~~~GQ~~dl~~~~~~~~~~~~~y~~~i~~KTa~L 156 (301)
T 2q80_A 88 SVINSANYVYFLGLEKVLTLDH------PDAVKLFTRQL-----LELHQGQGLDIYWRDNYTCPTEEEYKAMVLQKTGGL 156 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCC------TTHHHHHHHHH-----HHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCC------HHHHHHHHHHH-----HHHHHHHHHHHHhccCCCCCCHHHHHHHHHcccHHH
Confidence 9999999999999999987532 23445444433 3589999999854 5789999999999999
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHhhHhhhhcCCC----CCchHHhhcCchHHHHhH-----------
Q 019903 220 SECSAVCGGFLAGADDDEIQSLRRYGRAVGVLYQVVDDILEAKAQTP----RDEEKKKKKGKSYVAFYG----------- 284 (334)
Q Consensus 220 f~~a~~lGa~lag~~~~~~~~l~~~G~~lG~afQi~DD~lD~~~~~~----~~~~Dl~~~k~t~~~~~g----------- 284 (334)
|.++|++|++++|.++ .+++||.++|+||||+||++|++++++ ..++|+.+||.|||.+++
T Consensus 157 ~~~~~~~ga~~a~~~~----~l~~~g~~lG~aFQi~DD~ld~~~~~~~~GK~~g~Dl~egK~T~p~i~al~~~~~~~~l~ 232 (301)
T 2q80_A 157 FGLAVGLMQLFSDYKE----DLKPLLNTLGLFFQIRDDYANLHSKEYSENKSFCEDLTEGKFSFPTIHAIWSRPESTQVQ 232 (301)
T ss_dssp HHHHHHHHHHTCCCCS----CCHHHHHHHHHHHHHHHHHHHHHCC------CTTHHHHHTCCCHHHHHHHHHSTTCCHHH
T ss_pred HHHHHHHHHHHCCChH----HHHHHHHHHHHHHHHHHHHhhhcCChhhhCCCccchhhcCCcHHHHHHHHHcCccchHHH
Confidence 9999999999999873 589999999999999999999998754 367999999999987543
Q ss_pred -------------------------HHHHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHhcccccc
Q 019903 285 -------------------------VEKAMEVAEELRAKAKEELDRFKKYGDNVLPLYSFIDYAADREFSVV 331 (334)
Q Consensus 285 -------------------------le~a~~~a~~~~~~A~~~L~~lp~~~~~~~~L~~l~~~~~~R~~~~~ 331 (334)
++++++++++|.++|++.|+.+|. ++ .|..+++++..|.+..+
T Consensus 233 ~~l~~~~~~~~~~~~~~~~l~~~g~~~~a~~~~~~~~~~A~~~L~~l~~-~~---~L~~l~~~l~~~~~~~~ 300 (301)
T 2q80_A 233 NILRQRTENIDIKKYCVHYLEDVGSFEYTRNTLKELEAKAYKQIDARGG-NP---ELVALVKHLSKMFKEEN 300 (301)
T ss_dssp HHHHHTCCCHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTC-CH---HHHHHHHHHHTTCC---
T ss_pred HHHhcCCCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHcCCC-CH---HHHHHHHHHHHHhcccC
Confidence 457889999999999999999986 32 59999999999876543
No 37
>1yhl_A Farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, bisphosphonate, dimethyl ALLY pyrophosphate sulfate, FPPS, transferase; HET: DMA RIS; 1.95A {Trypanosoma cruzi} PDB: 1yhk_A* 1yhm_A* 3iba_A* 3ick_A* 3icm_A* 3icn_A* 3icz_A* 3id0_A*
Probab=100.00 E-value=6.5e-54 Score=416.07 Aligned_cols=274 Identities=17% Similarity=0.151 Sum_probs=224.5
Q ss_pred HHHHHHHHHHHHHHHHHhhc-----cCCchhHHHHHHHhhhcCCCCcchHHHHHHHHHHhCCC----chh---hHH----
Q 019903 43 KTYWTTLITEIDQNLEKAIT-----VKYPEQIYESMRYSVLAKGTKRAPPVMCVAACELFGVN----RIA---AFP---- 106 (334)
Q Consensus 43 ~~~~~~~~~~i~~~L~~~~~-----~~~~~~l~~~~~y~~~~~gGKrlRp~l~ll~~~~~g~~----~~~---~~~---- 106 (334)
..|+......++..+....+ ...++.+.++++|.+ .||||+||+|++++++++|++ ++. +++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~--~gGKrlRp~l~l~~~~~~~~~~~~~~~~~~~~~~~a~~ 82 (362)
T 1yhl_A 5 ERFLSVYDEVQAFLLDQLQSKYEIDPNRARYLRIMMDTTC--LGGKYFRGMTVVNVAEGFLAVTQHDEATKERILHDACV 82 (362)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH--SSSCCHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHhhc--CCcccHHHHHHHHHHHHhCCCcCCChhhhHHHHHHHHH
Confidence 34444444445555544431 222356888888876 499999999999999999875 222 344
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCCcCCh--HHHHHHHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHH
Q 019903 107 TACALEMVHAASLIHDDLPCMDDDPSRRGQPSNHTVYGV--DIAILAGDALFPLGFQHIVSHTPPHLVPEPRVLRVIAEI 184 (334)
Q Consensus 107 lA~avEliH~asLIhDDIp~iD~s~~RRG~pt~h~~~G~--~~Avl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~l~~~~ 184 (334)
+|+++||||+|||||||| ||+|++|||+||+|++||+ ++|||+||+|++.+|+++++.... ......+++++.+.
T Consensus 83 ~a~avEliH~asLiHDDI--~D~s~~RRG~pt~h~~~g~~~~~Ail~Gd~L~~~a~~~l~~~~~~-~~~~~~~~~~~~~~ 159 (362)
T 1yhl_A 83 GGWMIEFLQAHYLVEDDI--MDGSVMRRGKPCWYRFPGVTTQCAINDGIILKSWTQIMAWHYFAD-RPFLKDLLCLFQKV 159 (362)
T ss_dssp HHHHHHHHHHHHHHHHHH--HHTCCEETTEECGGGSTTTHHHHHHHHHHHHHHHHHHHHHHHSTT-CTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhc--cCCCCCCCCCccHHhccCccHhHHHHHHHHHHHHHHHHHHHhccc-chhHHHHHHHHHHH
Confidence 788999999999999999 9999999999999999999 589999999999999999886321 11234555655555
Q ss_pred HHHHhhhhhhhHhhhhccC----------------------ChhHHHHHHHhhHHHH-HHHHHHHHHHhcC-CCHHHHHH
Q 019903 185 ARAVGSTGMAAGQFLDLEG----------------------EPNLVEFVQEKKFGEM-SECSAVCGGFLAG-ADDDEIQS 240 (334)
Q Consensus 185 ~~~~~~~~~~~GQ~lDl~~----------------------~~~~y~~i~~~KTa~L-f~~a~~lGa~lag-~~~~~~~~ 240 (334)
. .+++.||.+|+.+ +.++|.+|+.+|||+| |++||++|++++| ++++..+.
T Consensus 160 ~-----~~~~~GQ~ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~KTa~Ls~~~~~~~ga~lag~~~~~~~~~ 234 (362)
T 1yhl_A 160 D-----YATAVGQMYDVTSMCDSNKLDPEVAQPMTTDFAEFTPAIYKRIVKYKTTFYTYLLPLVMGLFVSEAAASVEMNL 234 (362)
T ss_dssp H-----HHHHHHHHHHHTTTBCGGGCCTTSCCCBCSSCTTCSHHHHHHHHHHHTHHHHTHHHHHHHHHHTTCGGGSCHHH
T ss_pred H-----HHHHHHHHHHHHccccccccccccccccccccccCCHHHHHHHHHhcCcHHHHHHHHHHHHHHcCCCCHHHHHH
Confidence 4 4689999999854 3468999999999999 9999999999999 88888899
Q ss_pred HHHHHHHHHHHHhHHhhHhhhhcCC----CCCchHHhhcCchHHHHh---------------------------------
Q 019903 241 LRRYGRAVGVLYQVVDDILEAKAQT----PRDEEKKKKKGKSYVAFY--------------------------------- 283 (334)
Q Consensus 241 l~~~G~~lG~afQi~DD~lD~~~~~----~~~~~Dl~~~k~t~~~~~--------------------------------- 283 (334)
+++||.++|+||||+||++|+++++ + .++|+.+||+|||.++
T Consensus 235 l~~~g~~lG~aFQi~DD~lD~~~d~~~~GK-~g~Dl~egK~T~p~l~al~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~ 313 (362)
T 1yhl_A 235 VERVAHLIGEYFQVQDDVMDCFTPPEQLGK-VGTDIEDAKCSWLAVTFLGKANAAQVAEFKANYGDKDPAKVAVVKRLYS 313 (362)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSCHHHHSS-CCCTTTTTCCCHHHHHHHTTCCHHHHHHHHHHTTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhccCChHHhCC-ChhhHhcCCchHHHHHHHHhCCHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 9999999999999999999999864 4 6899999999998653
Q ss_pred ---HHHHHHHHHHHHHHHHHHHHhhccCCCCCh--HHHHHHHHHHHhccc
Q 019903 284 ---GVEKAMEVAEELRAKAKEELDRFKKYGDNV--LPLYSFIDYAADREF 328 (334)
Q Consensus 284 ---gle~a~~~a~~~~~~A~~~L~~lp~~~~~~--~~L~~l~~~~~~R~~ 328 (334)
+++++++++++|.++|++.|+.||. ++.+ +.|..+++++++|++
T Consensus 314 ~~g~~~~~~~~~~~~~~~A~~~L~~lp~-~~~~~~~~L~~l~~~i~~R~~ 362 (362)
T 1yhl_A 314 EANLQADFAAYEAEVVREVESLIEQLKV-KSPTFAESVAVVWEKTHKRKK 362 (362)
T ss_dssp HTTHHHHHHHHHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHTCCC
T ss_pred HCCCHHHHHHHHHHHHHHHHHHHHhCCC-CchhHHHHHHHHHHHHHhccC
Confidence 3556778889999999999999998 6678 999999999999975
No 38
>2her_A Fragment, farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, structural genomics, structural genomics consortium, SGC; HET: ZOL; 2.37A {Cryptosporidium parvum} PDB: 2o1o_A* 2q58_A*
Probab=100.00 E-value=2.2e-55 Score=425.09 Aligned_cols=277 Identities=17% Similarity=0.091 Sum_probs=230.1
Q ss_pred cchhcHHHHHHHHHHHHHHHHHHhhccCCc-----hhHHHHHHHhhhcCCCCcchHHHHHHHHHHhCCC----chhhHHH
Q 019903 37 STQFDLKTYWTTLITEIDQNLEKAITVKYP-----EQIYESMRYSVLAKGTKRAPPVMCVAACELFGVN----RIAAFPT 107 (334)
Q Consensus 37 ~~~~~~~~~~~~~~~~i~~~L~~~~~~~~~-----~~l~~~~~y~~~~~gGKrlRp~l~ll~~~~~g~~----~~~~~~l 107 (334)
....+|..+|....+.|.+.+...-....+ ..+.++++|.. .||||+||++++++++++|+. .+.+..+
T Consensus 23 ~~~~~f~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~y~~--~GGKrlRp~l~l~~~~~~g~~~~~~~~~~~~~ 100 (368)
T 2her_A 23 YDYTDFINYYDKFKVIVYNVLKKLPLNDEIRKPVIEYYLNCIDYNV--KKGKHIRGKILVLISSLSSAYSNIKRDSIYLL 100 (368)
T ss_dssp CCCTTGGGTHHHHHHHHHTTCCCCTTSCCTTTTHHHHHHHHHHHHT--TSSTTTTTC-CHHHHTTTTCCCSSSHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHHhh--CCCCccchHHHHHHHHHhCCCCcccHHHHHHH
Confidence 334456667887777777777653222223 55667777765 599999999999999999863 3678999
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCCcCChHHHHHHHHHHH---HHHHHHHHhcCCCCCCChHHHHHHHHHH
Q 019903 108 ACALEMVHAASLIHDDLPCMDDDPSRRGQPSNHTVYGVDIAILAGDALF---PLGFQHIVSHTPPHLVPEPRVLRVIAEI 184 (334)
Q Consensus 108 A~avEliH~asLIhDDIp~iD~s~~RRG~pt~h~~~G~~~Avl~GD~L~---~~a~~~l~~~~~~~~~~~~~~~~l~~~~ 184 (334)
|++|||||++||||||| ||+|++|||+||+|++||+.+|||+||+|+ +.+|+++++... ..+ ..+++..+
T Consensus 101 A~avEllH~asLIHDDI--mD~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~a~~ll~~~~~----~~~-~~~~~~~~ 173 (368)
T 2her_A 101 GWVVEAIQALILIADDI--MDSGKFRRGAPCWYIVHGQSNAINDIFFLKMLSLSLIFELSSVFG----NDI-VMKIQKIY 173 (368)
T ss_dssp HHHHHHHHHHHHHHHHH--HTTCCEETTEECHHHHTHHHHHHHHHHHHHHHHHHHHTTTHHHHC----HHH-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHccc--ccCCCCCCCCccHHhcCChHHHHHHHHHHHHHHHHHHHHHHHhcC----cCh-HHHHHHHH
Confidence 99999999999999999 999999999999999999999999999999 888988876311 111 23444444
Q ss_pred HHHHhhhhhhhHhhhhccCC-------h-hHHHHHHHhhHHHH-HHHHHHHHHHhcCCCHHH--HHHHHHHHHHHHHHHh
Q 019903 185 ARAVGSTGMAAGQFLDLEGE-------P-NLVEFVQEKKFGEM-SECSAVCGGFLAGADDDE--IQSLRRYGRAVGVLYQ 253 (334)
Q Consensus 185 ~~~~~~~~~~~GQ~lDl~~~-------~-~~y~~i~~~KTa~L-f~~a~~lGa~lag~~~~~--~~~l~~~G~~lG~afQ 253 (334)
.+++ .+++.||.+|+.+. . +.|..|+.+|||+| |++||++|++++|++++. .+.+++||.++|+|||
T Consensus 174 ~~~~--~~~~~GQ~lDl~~~~~~~~~~~~~~y~~ii~~KTa~Lsf~~~~~lGa~lag~~~~~~~~~~l~~~g~~lG~aFQ 251 (368)
T 2her_A 174 NESI--FFTVLGQHLDLSYFDLSKADKISERYFSMVEMKTSRYTFYMPVFFGLTLSEIQVSSAQLNLIEAILYKLGEFYQ 251 (368)
T ss_dssp HHHH--HHHHHHHHHHHCSCCCSSCSSHHHHHHHHHHHHTHHHHTHHHHHHHHHHSCCCCCCSSTTTHHHHHHHHHHHHH
T ss_pred HHHH--HHHHHHHHHHHHhcccCCCCChHHHHHHHHHccchHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHH
Confidence 4433 56899999999762 2 78999999999999 999999999999999887 8899999999999999
Q ss_pred HHhhHhhhhcCCCCCchHHhhcCchHHHHh--------------------------------HHHHHHHHHHHHHHHHHH
Q 019903 254 VVDDILEAKAQTPRDEEKKKKKGKSYVAFY--------------------------------GVEKAMEVAEELRAKAKE 301 (334)
Q Consensus 254 i~DD~lD~~~~~~~~~~Dl~~~k~t~~~~~--------------------------------gle~a~~~a~~~~~~A~~ 301 (334)
|+||++|++..++ .++|+++||+|||.++ +++++++++++|.++|++
T Consensus 252 I~DD~LD~~~~GK-~g~Dl~egK~T~pvi~al~~a~~~~r~~L~~~~~~~~~~v~~li~~~g~~~~~~~~~~~~~~~A~~ 330 (368)
T 2her_A 252 VHNDVSDYLFNDS-NADDICRFKLTWPLQKSFEIADEEMKLKISENYGKNSSLVKDCYNLLKINEHYLEYQRNALDYLIK 330 (368)
T ss_dssp HHHHHHHHHSCCS-SSCTTTTTCCCHHHHSSTTTCCHHHHHHHHHHTTTCHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCC-CCChHhCCcccHHHHHHHHhCCHHHHHHHHHHhCCcHHHHHHHHHHCCcHHHHHHHHHHHHHHHHH
Confidence 9999999994455 8899999999998542 467888999999999999
Q ss_pred HHhhccCCCCChHHHHHHHHHHHhc
Q 019903 302 ELDRFKKYGDNVLPLYSFIDYAADR 326 (334)
Q Consensus 302 ~L~~lp~~~~~~~~L~~l~~~~~~R 326 (334)
.|+.+|. ++.++.|..+++++.++
T Consensus 331 ~L~~lp~-~~~k~~L~~l~~~i~~~ 354 (368)
T 2her_A 331 LVKDITD-DSLQKVFIHLIHQISEL 354 (368)
T ss_dssp HHTTCSC-HHHHHHHHHHHHHHHHH
T ss_pred HHHhCCC-cHHHHHHHHHHHHHHHH
Confidence 9999998 68899999999999886
No 39
>3dyh_A Farnesyl pyrophosphate synthase; protein-bisphosphonate complex, isoprene biosynthesis, transferase; HET: 721; 1.94A {Trypanosoma brucei} PDB: 2ewg_A* 2i19_A* 2p1c_A* 3dyf_A* 3dyg_A* 2ogd_A* 3efq_A* 3egt_A*
Probab=100.00 E-value=2.7e-54 Score=421.68 Aligned_cols=277 Identities=15% Similarity=0.152 Sum_probs=227.8
Q ss_pred hcHHHHHHHHHHHHHHHHHHhhcc--CCchhHHHHHHHhhhcCCCCcchHHHHHHHHHHhCC-------------Cchhh
Q 019903 40 FDLKTYWTTLITEIDQNLEKAITV--KYPEQIYESMRYSVLAKGTKRAPPVMCVAACELFGV-------------NRIAA 104 (334)
Q Consensus 40 ~~~~~~~~~~~~~i~~~L~~~~~~--~~~~~l~~~~~y~~~~~gGKrlRp~l~ll~~~~~g~-------------~~~~~ 104 (334)
-.|..+|....+.+.+.+....+. ..+..+.++++|.+ .||||+||+||+++++++|+ +.+.+
T Consensus 27 ~~f~~~~~~v~~~l~~~l~~~~~~~~~~~~~l~~~m~Y~~--~GGKr~Rp~l~l~~~~~l~~~~~~~~~~~~~~~~~~~~ 104 (390)
T 3dyh_A 27 QMFMQVYDEIQMFLLEELELKFDMDPNRVRYLRKMMDTTC--LGGKYNRGLTVIDVAESLLSLSPNNNGEEDDGARRKRV 104 (390)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH--SSSCCHHHHHHHHHHHHTSCC---------CCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhccccchhHHHHHHHHHHhhc--CCccchhHHHHHHHHHHhCCccccccccccccCCHHHH
Confidence 446667766666666666654332 22357899999987 49999999999999999886 23456
Q ss_pred HHHHH----HHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCCcCChHHHHHHHHHHHHHH--HHHHHhcCCCCCCChHHHH
Q 019903 105 FPTAC----ALEMVHAASLIHDDLPCMDDDPSRRGQPSNHTVYGVDIAILAGDALFPLG--FQHIVSHTPPHLVPEPRVL 178 (334)
Q Consensus 105 ~~lA~----avEliH~asLIhDDIp~iD~s~~RRG~pt~h~~~G~~~Avl~GD~L~~~a--~~~l~~~~~~~~~~~~~~~ 178 (334)
+++|+ ||||||++||||||| ||+|++|||+||+|+.||+++||++||+++..+ |+++++..... .....++
T Consensus 105 ~~~A~~~g~avEliH~asLIHDDI--mD~s~~RRG~Pt~h~~~G~~~ail~gD~ll~~a~a~~ll~~~~~~~-~~~~~~~ 181 (390)
T 3dyh_A 105 LHDACVCGWMIEFLQAHYLVEDDI--MDNSVTRRGKPCWYRHPDVTVQCAINDGLLLKSWTHMMAMHFFADR-PFLQDLL 181 (390)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH--HHTCCEETTEECGGGSTTCCHHHHHHHHHHHHHHHHHHHHHHSTTC-TTHHHHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHcCC--cCCCCCcCCCccccccCChHHHHHHHHHHHHHHHHHHHHHHhccCc-hhHHHHH
Confidence 66666 799999999999999 999999999999999999999999999999754 67887643210 1123455
Q ss_pred HHHHHHHHHHhhhhhhhHhhhhccC----------------------ChhHHHHHHHhhHHHH-HHHHHHHHHHhcCCCH
Q 019903 179 RVIAEIARAVGSTGMAAGQFLDLEG----------------------EPNLVEFVQEKKFGEM-SECSAVCGGFLAGADD 235 (334)
Q Consensus 179 ~l~~~~~~~~~~~~~~~GQ~lDl~~----------------------~~~~y~~i~~~KTa~L-f~~a~~lGa~lag~~~ 235 (334)
+++.+.. ..++.||.+|+.+ +.+.|.+|+.+|||+| |++||++|++++|+++
T Consensus 182 ~~~~~~~-----~~~~~GQ~lDl~~~~e~~~~d~~~~~~~~~~~~~~t~~~y~~i~~~KTa~L~~~~~~~~ga~laga~~ 256 (390)
T 3dyh_A 182 CRFNRVD-----YTTAVGQLYDVTSMFDSNKLDPDVSQPTTTDFAEFTLSNYKRIVKYKTAYYTYLLPLVMGLIVSEALP 256 (390)
T ss_dssp HHHHHHH-----HHHHHHHHHHHTTTSCGGGCCTTSCCCCCSSCTTCCHHHHHHHHHHHTHHHHTHHHHHHHHHHTTCGG
T ss_pred HHHHHHH-----HHHHHHHHHHHhhcccccccccccccccccccCCCCHHHHHHHHHhhhhHHHHHHHHHHHHHHcCCCh
Confidence 6665554 3578999999864 4578999999999999 9999999999999987
Q ss_pred HH-HHHHHHHHHHHHHHHhHHhhHhhhhcCC----CCCchHHhhcCchHHHHh---------------------------
Q 019903 236 DE-IQSLRRYGRAVGVLYQVVDDILEAKAQT----PRDEEKKKKKGKSYVAFY--------------------------- 283 (334)
Q Consensus 236 ~~-~~~l~~~G~~lG~afQi~DD~lD~~~~~----~~~~~Dl~~~k~t~~~~~--------------------------- 283 (334)
+. .+.+++||.++|+||||+||++|+++++ + .++|+++||+|||.++
T Consensus 257 ~~~~~~l~~~g~~lGlaFQI~DDiLD~~gd~~~~GK-~g~Dl~egK~T~pvi~al~~~~~~~r~~L~~~~~~~~~~~v~~ 335 (390)
T 3dyh_A 257 TVDMGVTEELAMLMGEYFQVQDDVMDCFTPPERLGK-VGTDIQDAKCSWLAVTFLAKASSAQVAEFKANYGSGDSEKVAT 335 (390)
T ss_dssp GSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHSS-CCCTTTTTCCCHHHHHHHHHCCHHHHHHHHTTTTCCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCChHHhCC-CcchhhcCCccHHHHHHHHhCCHHHHHHHHHHhCCCCHHHHHH
Confidence 75 7899999999999999999999999874 4 7899999999998543
Q ss_pred ---------HHHHHHHHHHHHHHHHHHHHhhccCCCC--ChHHHHHHHHHHHhccc
Q 019903 284 ---------GVEKAMEVAEELRAKAKEELDRFKKYGD--NVLPLYSFIDYAADREF 328 (334)
Q Consensus 284 ---------gle~a~~~a~~~~~~A~~~L~~lp~~~~--~~~~L~~l~~~~~~R~~ 328 (334)
++++++++++++.++|++.|+.||. ++ .++.|..|++++.+|+|
T Consensus 336 v~~l~~~~g~~~~~~~~~~~~~~~a~~~i~~l~~-~~~~~~~~l~~l~~~i~~R~k 390 (390)
T 3dyh_A 336 VRRLYEEADLQGDYVAYEAAVAEQVKELIEKLRL-CSPGFAASVETLWGKTYKRQK 390 (390)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHH-HCHHHHHHHHHHHHTTTTCCC
T ss_pred HHHHHHHCCcHHHHHHHHHHHHHHHHHHHHcCCC-CchHHHHHHHHHHHHHHcCCC
Confidence 4788889999999999999999998 45 37899999999999975
No 40
>2e8v_A Geranylgeranyl pyrophosphate synthetase; prenyltransferase, farnesyl pyrophosphate, bisphosphonate; HET: GRG; 1.80A {Saccharomyces cerevisiae} PDB: 2e8t_A* 2e8u_A* 2dh4_A* 2e8w_A* 2e8x_A* 2e90_A* 2e91_A* 2e92_A* 2e93_A* 2e94_A* 2e95_A* 2z4v_A* 2z4w_A* 2z4x_A* 2z4y_A* 2z4z_A* 2z50_A* 2z52_A* 2z78_A* 2z7h_A* ...
Probab=100.00 E-value=4.1e-54 Score=414.00 Aligned_cols=263 Identities=19% Similarity=0.213 Sum_probs=196.9
Q ss_pred HHHHHHHHhhcc--CCchhHHHHHHHhhhcCCCCcchHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHhCCCCCCC
Q 019903 52 EIDQNLEKAITV--KYPEQIYESMRYSVLAKGTKRAPPVMCVAACELFGVNRIAAFPTACALEMVHAASLIHDDLPCMDD 129 (334)
Q Consensus 52 ~i~~~L~~~~~~--~~~~~l~~~~~y~~~~~gGKrlRp~l~ll~~~~~g~~~~~~~~lA~avEliH~asLIhDDIp~iD~ 129 (334)
.|++.+.+.+.. ..++.+.++++|.+.. ||||+||.|++++++++|++.+.+..+|+++||||+|||||||| ||+
T Consensus 9 ~v~~~l~~~~~~~~~~~~~l~~~~~y~~~~-gGKrlRp~l~l~~~~~~~~~~~~~~~~A~avEliH~asLiHDDI--~D~ 85 (340)
T 2e8v_A 9 KIDELINNDPVWSSQNESLISKPYNHILLK-PGKNFRLNLIVQINRVMNLPKDQLAIVSQIVELLHNSSLLIDDI--EDN 85 (340)
T ss_dssp HHHHHHTSCCCCCHHHHHHHHHHHHHHHTS-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH--HTT
T ss_pred HHHHHHHhcccccccChHHHHHHHHHHHhC-CCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhCcc--ccC
Confidence 577777776521 1235699999998864 99999999999999999998888999999999999999999999 999
Q ss_pred CCCCCCCCCCCCcCChHHHHHHHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHhhhhhhhHhhhhccC------
Q 019903 130 DPSRRGQPSNHTVYGVDIAILAGDALFPLGFQHIVSHTPPHLVPEPRVLRVIAEIARAVGSTGMAAGQFLDLEG------ 203 (334)
Q Consensus 130 s~~RRG~pt~h~~~G~~~Avl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~GQ~lDl~~------ 203 (334)
|++|||+||+|.+||+++|||+||||++.||+.+++... +.+...+++..+.+.+ .+++.||.+|+.+
T Consensus 86 s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~~----~~~~~~~~~~~~~~~~--~~~~~GQ~ldl~~~~~~~~ 159 (340)
T 2e8v_A 86 APLRRGQTTSHLIFGVPSTINTANYMYFRAMQLVSQLTT----KEPLYHNLITIFNEEL--INLHRGQGLDIYWRDFLPE 159 (340)
T ss_dssp CSEETTEECHHHHTCHHHHHHHHHHHHHHHHHHGGGGCC----CHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHSTTS
T ss_pred CCCCCCCcchhhccCchHHHHHHHHHHHHHHHHHHHcCC----chhhHHHHHHHHHHHH--HHHHHHHHHHHHhhccccc
Confidence 999999999999999999999999999999999988642 3333344444444433 5689999999852
Q ss_pred ---ChhHHHHHHHhhHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHhhHhhhhcCCC----CCchHHhhcC
Q 019903 204 ---EPNLVEFVQEKKFGEMSECSAVCGGFLAGADDDEIQSLRRYGRAVGVLYQVVDDILEAKAQTP----RDEEKKKKKG 276 (334)
Q Consensus 204 ---~~~~y~~i~~~KTa~Lf~~a~~lGa~lag~~~~~~~~l~~~G~~lG~afQi~DD~lD~~~~~~----~~~~Dl~~~k 276 (334)
+.++|.+|+.+|||+||+++|++|++++|+++ ..+.+++||.++|+||||+||++|++++++ ..++|+.+||
T Consensus 160 ~~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~-~~~~l~~~g~~lG~aFQi~DD~ld~~~~~~~~GK~~g~Dl~egK 238 (340)
T 2e8v_A 160 IIPTQEMYLNMVMNKTGGLFRLTLRLMEALSPSSH-HGHSLVPFINLLGIIYQIRDDYLNLKDFQMSSEKGFAEDITEGK 238 (340)
T ss_dssp CCCCHHHHHHHHHHHTHHHHHHHHHHHHHHCCC-------CHHHHHHHHHHHHHHHHHHHHHC-----CCCTTHHHHTTC
T ss_pred CCCCHHHHHHHHHhhhHHHHHHHHHHHHHHcCCcH-HHHHHHHHHHHHHHHHHHHHHHHhccCChhhhCCCchhhHhcCC
Confidence 67899999999999999999999999999887 578999999999999999999999998753 3579999999
Q ss_pred chHHHHh-------------------------------------------HHHHHHHHHHHHHHHHHHH-----HhhccC
Q 019903 277 KSYVAFY-------------------------------------------GVEKAMEVAEELRAKAKEE-----LDRFKK 308 (334)
Q Consensus 277 ~t~~~~~-------------------------------------------gle~a~~~a~~~~~~A~~~-----L~~lp~ 308 (334)
.|+|.++ +++++++++++|.++|++. |+.||+
T Consensus 239 ~Tlp~i~al~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~l~~~~ga~~~~~~~~~~~~~~A~~~~~~~~L~~lp~ 318 (340)
T 2e8v_A 239 LSFPIVHALNFTKTKGQTEQHNEILRILLLRTSDKDIKLKLIQILEFDTNSLAYTKNFINQLVNMIKNDNENKYLPDLAS 318 (340)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTC-----------
T ss_pred chHHHHHHHHhCcccccchhHHHHHHHHhCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhccCcccHhhCCC
Confidence 9887443 3456667777788888888 888887
Q ss_pred CCC-----ChHHHHHHHHHHHh
Q 019903 309 YGD-----NVLPLYSFIDYAAD 325 (334)
Q Consensus 309 ~~~-----~~~~L~~l~~~~~~ 325 (334)
++ .++.|..|++++.+
T Consensus 319 -~~~~~~~~~~~L~~l~~~l~~ 339 (340)
T 2e8v_A 319 -HSDTATNLHDELLYIIDHLSE 339 (340)
T ss_dssp ----------------------
T ss_pred -CccccHHHHHHHHHHHHHHHh
Confidence 55 78889999888764
No 41
>2ihi_A Pyrophosphate synthase; PV092040, structural genomics, structural genomics consortium, SGC, transferase; 2.00A {Plasmodium vivax sai-1} PDB: 3mav_A 3cc9_A* 3ez3_A* 3ldw_A* 3mys_A* 3ph7_A* 3rbm_A* 3ryw_A*
Probab=100.00 E-value=2.8e-54 Score=421.72 Aligned_cols=277 Identities=15% Similarity=0.118 Sum_probs=225.0
Q ss_pred hcHHHHHHHHHHHHHHHHHHhhccCCc-----hhHHHHHHHhhhcCCCCcchHHHHHHHHHHhCCC------chhhHHHH
Q 019903 40 FDLKTYWTTLITEIDQNLEKAITVKYP-----EQIYESMRYSVLAKGTKRAPPVMCVAACELFGVN------RIAAFPTA 108 (334)
Q Consensus 40 ~~~~~~~~~~~~~i~~~L~~~~~~~~~-----~~l~~~~~y~~~~~gGKrlRp~l~ll~~~~~g~~------~~~~~~lA 108 (334)
-+|..+|......|.+.+........+ +.+.++++|.+ .||||+||+|++++++++|++ .+.+..+|
T Consensus 34 ~~f~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~Y~~--~GGKrlRp~Lvl~~~~~~g~~~~~~~~~~~a~~lA 111 (395)
T 2ihi_A 34 AFFRNMYDKYRDAFLSHLNEYSLEEEIKEHISKYYKLLFDYNC--LGGKNNRGILVILIYEYVKNRDINSSEWEKAACLA 111 (395)
T ss_dssp -CTTTTHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHHHHH--SSSCCHHHHHHHHHHHHHC---CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhCCCChhhhhhHHHHHHHHHHhhc--cCcccHHHHHHHHHHHHhCCCCCChhHHHHHHHHH
Confidence 356678888888888888763211111 45678899976 599999999999999999875 25678999
Q ss_pred HHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCCcCChHH--HHHHHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHH
Q 019903 109 CALEMVHAASLIHDDLPCMDDDPSRRGQPSNHTVYGVDI--AILAGDALFPLGFQHIVSHTPPHLVPEPRVLRVIAEIAR 186 (334)
Q Consensus 109 ~avEliH~asLIhDDIp~iD~s~~RRG~pt~h~~~G~~~--Avl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~l~~~~~~ 186 (334)
++|||||++||||||| ||+|++|||+||+|++||+++ ||++||+|++.+|+++++..... ....++++++.+.+
T Consensus 112 ~aiEliH~asLIHDDI--mD~s~~RRG~pt~h~~~g~~~~~AI~~gd~L~~~a~~ll~~~~~~~-~~~~~~~~~~~~~~- 187 (395)
T 2ihi_A 112 WCIEILQAAFLVADDI--MDKGEMRRNKYCWYLLKDVETKNAVNDVLLLYNSIYKLIEIYLRNE-SCYVDVIATFRDAT- 187 (395)
T ss_dssp HHHHHHHHHHHHHHHH--HTTCSEETTEECGGGSTTTHHHHHHHHHHHHHHHHHHHHHHHHTTS-TTHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHhcc--ccCCCCCCCCCCccccCCccHHHHHHHHHHHHHHHHHHHHHhccCc-hhHHHHHHHHHHHH-
Confidence 9999999999999999 999999999999999999998 99999999999999998752110 12345556665554
Q ss_pred HHhhhhhhhHhhhhcc------------------------------CChhHHHHHHHhhHHHH-HHHHHHHHHHhcCCCH
Q 019903 187 AVGSTGMAAGQFLDLE------------------------------GEPNLVEFVQEKKFGEM-SECSAVCGGFLAGADD 235 (334)
Q Consensus 187 ~~~~~~~~~GQ~lDl~------------------------------~~~~~y~~i~~~KTa~L-f~~a~~lGa~lag~~~ 235 (334)
.+++.||.+|+. .+.+.|..|+.+|||+| |.+||++|++++|+++
T Consensus 188 ----~~~~~GQ~lDl~~~~~~~~~~~~~~~~~~~~~~~e~~~dl~~~t~~~y~~i~~~KTa~Ls~~~~~~~ga~lag~~~ 263 (395)
T 2ihi_A 188 ----LKTIIGQHLDTNIFSDKYSDAHREIDVNNINVPEQPVIDINMINFGVYKNIVIHKTAYYSFFLPIVCGMLLAGIAV 263 (395)
T ss_dssp ----HHHHHHHHHHHHTTSHHHHCSSSCCCTTCCCCC-CCCCCGGGCSHHHHHHHHHHHHHHHHTHHHHHHHHHHTTCCT
T ss_pred ----HHHHHhHHHHHHhhhhcccccccccccccccccccccccccCCCHHHHHHHHHccchHHHHHHHHHHHHHHcCCCh
Confidence 468999999991 15678999999999999 9999999999999998
Q ss_pred HH--HHHHHHHHHHHHHHHhHHhhHhhhhcCCCC---CchHHhhcCchHHHHh---------------------------
Q 019903 236 DE--IQSLRRYGRAVGVLYQVVDDILEAKAQTPR---DEEKKKKKGKSYVAFY--------------------------- 283 (334)
Q Consensus 236 ~~--~~~l~~~G~~lG~afQi~DD~lD~~~~~~~---~~~Dl~~~k~t~~~~~--------------------------- 283 (334)
+. .+.++.||.++|+||||+||++|++++++. .++|+.+||+|||.++
T Consensus 264 ~~~~~~~l~~~g~~lG~aFQI~DD~LD~~gd~~~~GK~g~Dl~egK~T~p~l~al~~~~~~~~~~L~~~~~~~~~~~~~~ 343 (395)
T 2ihi_A 264 DNLIYKKIEDISMLMGEYFQIHDDYLDIFGDSTKTGKVGSDIQNNKLTWPLIKTFELCSEPDKIKIVKNYGKNNLACVKV 343 (395)
T ss_dssp TCTHHHHHHHHHHHHHHHHHHHHHHHHSCC---------CTTTTTCCCHHHHHHHHHCCHHHHHHHHHHCC-CCHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHhCCCcchhhcCCchHHHHHHHHhCCHHHHHHHHHHhCCCCHHHHHH
Confidence 87 899999999999999999999999987532 6789999999998643
Q ss_pred ---------HHHHHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHhcc
Q 019903 284 ---------GVEKAMEVAEELRAKAKEELDRFKKYGDNVLPLYSFIDYAADRE 327 (334)
Q Consensus 284 ---------gle~a~~~a~~~~~~A~~~L~~lp~~~~~~~~L~~l~~~~~~R~ 327 (334)
++++++++++++.++|++.|+.+|+ ++.++.|..+++++.+|.
T Consensus 344 v~~l~~~~g~~~~~~~~~~~~~~~A~~~L~~lp~-~~~r~~L~~l~~~i~~R~ 395 (395)
T 2ihi_A 344 IDSLYEQYKIRKHYESYEKAQKAKILSAINELHH-EGIEYVLKYLLEILFTGV 395 (395)
T ss_dssp HHHC----CHHHHHHHHHHHHHHHHHHHHTTSCC-HHHHHHHHHHHHC-----
T ss_pred HHHHHHHCChHHHHHHHHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHhccC
Confidence 4788889999999999999999998 688999999999999883
No 42
>3mav_A Farnesyl pyrophosphate synthase; PV092040, structural genomics, structural genomics consortium, SGC, transferase, isoprene biosynthesis; 2.10A {Plasmodium vivax} PDB: 3cc9_A* 3ez3_A* 3ldw_A* 3mys_A* 3ph7_A* 3rbm_A* 3ryw_A*
Probab=100.00 E-value=2.3e-53 Score=416.43 Aligned_cols=274 Identities=15% Similarity=0.138 Sum_probs=215.0
Q ss_pred cHHHHHHHHHHHHHHHHHHhhccCCch-----hHHHHHHHhhhcCCCCcchHHHHHHHHHHhCCCc------hhhHHHHH
Q 019903 41 DLKTYWTTLITEIDQNLEKAITVKYPE-----QIYESMRYSVLAKGTKRAPPVMCVAACELFGVNR------IAAFPTAC 109 (334)
Q Consensus 41 ~~~~~~~~~~~~i~~~L~~~~~~~~~~-----~l~~~~~y~~~~~gGKrlRp~l~ll~~~~~g~~~------~~~~~lA~ 109 (334)
.|...+.+..+.|.+.|++......|. .+...+.|.+ .||||+||+|++++++++|+.. +.++.+|+
T Consensus 35 ~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~Y~~--~GGKRlRP~l~l~~~~~~~~~~~~~~~~~~~~~~A~ 112 (395)
T 3mav_A 35 FFRNMYDKYRDAFLSHLNEYSLEEEIKEHISKYYKLLFDYNC--LGGKNNRGILVILIYEYVKNRDINSSEWEKAACLAW 112 (395)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHHHHH--SSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCC--CCchhhhHHHHHHHHHHhCCCCCCcccHHHHHHHHH
Confidence 467788888888888887654322222 3444566766 4999999999999999997642 56889999
Q ss_pred HHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCCcCChHHHHHHHHHHH--HHHHHHHHhcCCCCCCChHHHHHHHHHHHHH
Q 019903 110 ALEMVHAASLIHDDLPCMDDDPSRRGQPSNHTVYGVDIAILAGDALF--PLGFQHIVSHTPPHLVPEPRVLRVIAEIARA 187 (334)
Q Consensus 110 avEliH~asLIhDDIp~iD~s~~RRG~pt~h~~~G~~~Avl~GD~L~--~~a~~~l~~~~~~~~~~~~~~~~l~~~~~~~ 187 (334)
||||||+|||||||| ||+|++|||+||+|++||+++||++||+|+ +.++.++....... .....+++++.+..
T Consensus 113 aiEliH~asLiHDDI--mD~s~~RRG~pt~h~~~g~~~Ail~GD~ll~~~~~~~ll~~~~~~~-~~~~~~~~~~~~~~-- 187 (395)
T 3mav_A 113 CIEILQAAFLVADDI--MDKGEMRRNKYCWYLLKDVETKNAVNDVLLLYNSIYKLIEIYLRNE-SCYVDVIATFRDAT-- 187 (395)
T ss_dssp HHHHHHHHHHHHHHH--HTTCSEETTEECGGGSTTTHHHHHHHHHHHHHHHHHHHHHHHHTTS-TTHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHhHH--hcCCCCCCCchhhhhccchHHHHHhhhHHHHHHHHHHHHHHhccCh-hHHHHHHHHHHHHH--
Confidence 999999999999999 999999999999999999999999999976 45677766543210 12233444444433
Q ss_pred HhhhhhhhHhhhhccC------------------------------ChhHHHHHHHhhHHHH-HHHHHHHHHHhcCCC--
Q 019903 188 VGSTGMAAGQFLDLEG------------------------------EPNLVEFVQEKKFGEM-SECSAVCGGFLAGAD-- 234 (334)
Q Consensus 188 ~~~~~~~~GQ~lDl~~------------------------------~~~~y~~i~~~KTa~L-f~~a~~lGa~lag~~-- 234 (334)
..++.||.+|+.+ +.+.|..|+.+|||+| |.+||.+|++++|++
T Consensus 188 ---~~~~~GQ~lDl~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~t~~~Y~~ii~~KTa~L~~~~~~~~ga~~ag~~~d 264 (395)
T 3mav_A 188 ---LKTIIGQHLDTNIFSDKYSDAHREIDVNNINVPEQPVIDINMINFGVYKNIVIHKTAYYSFFLPIVCGMLLAGIAVD 264 (395)
T ss_dssp ---HHHHHHHHHHHHTTSHHHHCC-CCCCSSCSSSCCCCCCCGGGCSHHHHHHHHHHHTHHHHTHHHHHHHHHHTTCCTT
T ss_pred ---HHHHHHHHHHHHHHhccchhHHHHhhhcccccchhcccccccCCHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcch
Confidence 4689999999743 4578999999999999 899999999999874
Q ss_pred HHHHHHHHHHHHHHHHHHhHHhhHhhhhcCCCC---CchHHhhcCchHHHHh----------------------------
Q 019903 235 DDEIQSLRRYGRAVGVLYQVVDDILEAKAQTPR---DEEKKKKKGKSYVAFY---------------------------- 283 (334)
Q Consensus 235 ~~~~~~l~~~G~~lG~afQi~DD~lD~~~~~~~---~~~Dl~~~k~t~~~~~---------------------------- 283 (334)
++.++.+++||.++|+||||+||++|++++++. .|+|+++||+|||.++
T Consensus 265 ~~~~~~l~~~g~~lG~aFQI~DDiLD~~gd~~~~GK~g~Dl~egK~T~p~i~al~~~~~~~r~~L~~~~~~~d~~~~~~v 344 (395)
T 3mav_A 265 NLIYKKIEDISMLMGEYFQIHDDYLDIFGDSTKTGKVGSDIQNNKLTWPLIKTFELCSEPDKIKIVKNYGKNNLACVKVI 344 (395)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHC--------CCCTTTTTCCCHHHHHHHHHSCHHHHHHHHHHTTCSCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHhhhcccccHHhcCCchHHHHHHHHhCCHHHHHHHHHHhCCCCHHHHHHH
Confidence 456789999999999999999999999988653 5799999999998654
Q ss_pred --------HHHHHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHhcccc
Q 019903 284 --------GVEKAMEVAEELRAKAKEELDRFKKYGDNVLPLYSFIDYAADREFS 329 (334)
Q Consensus 284 --------gle~a~~~a~~~~~~A~~~L~~lp~~~~~~~~L~~l~~~~~~R~~~ 329 (334)
+.++++++++++.++|.+.|+.+|. +.+..+++++++|.++
T Consensus 345 ~~l~~~~g~~~~~~~~~~~~~~~a~~~l~~l~~-----~~l~~ll~~lle~i~~ 393 (395)
T 3mav_A 345 DSLYEQYKIRKHYESYEKAQKAKILSAINELHH-----EGIEYVLKYLLEILFT 393 (395)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHHHHHHHHTSCC-----HHHHHHHHHHHHHC--
T ss_pred HHHHHHCCcHHHHHHHHHHHHHHHHHHHHhCCc-----HHHHHHHHHHHHHHhc
Confidence 2466778888899999999999875 4688888888887653
No 43
>1uby_A FPS, farnesyl diphosphate synthase; transferase, isoprene biosynthesis, cholesterol biosynthesis; HET: DMA; 2.40A {Gallus gallus} SCOP: a.128.1.1 PDB: 1ubw_A* 1ubv_A* 1ubx_A* 1fps_A
Probab=100.00 E-value=2.2e-53 Score=412.58 Aligned_cols=275 Identities=17% Similarity=0.156 Sum_probs=229.6
Q ss_pred HHHHHHHHHHHHHHHHHhhcc----CCchhHHHHHHHhhhcCCCCcchHHHHHHHHHHhCCC----ch---hhHHHHHHH
Q 019903 43 KTYWTTLITEIDQNLEKAITV----KYPEQIYESMRYSVLAKGTKRAPPVMCVAACELFGVN----RI---AAFPTACAL 111 (334)
Q Consensus 43 ~~~~~~~~~~i~~~L~~~~~~----~~~~~l~~~~~y~~~~~gGKrlRp~l~ll~~~~~g~~----~~---~~~~lA~av 111 (334)
.+|+......+++.+...++. ..+..+.++++|.+ .||||+||+|++++++++|++ ++ .+..+|++|
T Consensus 29 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~y~~--~gGKrlRp~l~l~~~~~~~~~~~~~~~~~~~~~~~A~ai 106 (367)
T 1uby_A 29 EEFVGFFPQIVRDLTEDGIGHPEVGDAVARLKEVLQYNA--PGGKCNRGLTVVAAYRELSGPGQKDAESLRCALAVGWCI 106 (367)
T ss_dssp HHHHHTHHHHHHHHHTTTSSCTTTHHHHHHHHHHHHHHS--SSSCCHHHHHHHHHHHHHCCGGGCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhcccCchhhHHHHHHHHhhhc--CCCcchhHHHHHHHHHHhCCCccCChhhHHHHHHHHHHH
Confidence 345555556666666655441 22357889999976 499999999999999999873 22 478999999
Q ss_pred HHHHHHHHHHhCCCCCCCCCCCCCCCCCCCcCChH-HHHHHHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHhh
Q 019903 112 EMVHAASLIHDDLPCMDDDPSRRGQPSNHTVYGVD-IAILAGDALFPLGFQHIVSHTPPHLVPEPRVLRVIAEIARAVGS 190 (334)
Q Consensus 112 EliH~asLIhDDIp~iD~s~~RRG~pt~h~~~G~~-~Avl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~ 190 (334)
||||++||||||| ||+|++|||+||+|++||++ ++|+.||++++.+|+++++.... ......+++++.++.
T Consensus 107 EliH~asLiHDDI--mD~s~~RRG~pt~h~~~g~~~~ai~dg~~l~~~a~~~l~~~~~~-~~~~~~~~~~~~~~~----- 178 (367)
T 1uby_A 107 ELFQAASLVADDI--MDQSLTRRGQLCWYKKEGVGLDAINDSFLLESSVYRVLKKYCRQ-RPYYVHLLELFLQTA----- 178 (367)
T ss_dssp HHHHHHHHHHHHH--HHTCCEETTEECGGGSTTTTTHHHHHHHHHHHHHHHHHHHHHTT-STTHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHhCcc--cCCCCCCCCCCChhhccCcHHHHHHHHHHHHHHHHHHHHHhccc-cccHHHHHHHHHHHH-----
Confidence 9999999999999 99999999999999999999 99999999999999999875321 012345666666654
Q ss_pred hhhhhHhhhhccC-----------ChhHHHHHHHhhHHHH-HHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHhHHhh
Q 019903 191 TGMAAGQFLDLEG-----------EPNLVEFVQEKKFGEM-SECSAVCGGFLAG-ADDDEIQSLRRYGRAVGVLYQVVDD 257 (334)
Q Consensus 191 ~~~~~GQ~lDl~~-----------~~~~y~~i~~~KTa~L-f~~a~~lGa~lag-~~~~~~~~l~~~G~~lG~afQi~DD 257 (334)
..++.||.+|+.+ +.+.|.+|+.+|||+| |++||++|++++| ++++..+.+++||.++|+||||+||
T Consensus 179 ~~~~~GQ~lDl~~~~~~~~d~~~~t~~~y~~ii~~KTa~Lsf~~~~~~ga~lag~~~~~~~~~l~~~g~~lG~aFQI~DD 258 (367)
T 1uby_A 179 YQTELGQMLDLITAPVSKVDLSHFSEERYKAIVKYKTAFYSFYLPVAAAMYMVGIDSKEEHENAKAILLEMGEYFQIQDD 258 (367)
T ss_dssp HHHHHHHHHHHHHSCTTSCCCTTCCHHHHHHHHHHHTHHHHTHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccccccccccCCHHHHHHHHHhCchHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3579999999853 5678999999999999 9999999999999 8999999999999999999999999
Q ss_pred HhhhhcCCCC---CchHHhhcCchHHHHhHHHH------------------------------------HHHHHHHHHHH
Q 019903 258 ILEAKAQTPR---DEEKKKKKGKSYVAFYGVEK------------------------------------AMEVAEELRAK 298 (334)
Q Consensus 258 ~lD~~~~~~~---~~~Dl~~~k~t~~~~~gle~------------------------------------a~~~a~~~~~~ 298 (334)
++|++++++. .|+|+.+||+|||.+++++. ++.++++|.++
T Consensus 259 ~LD~~gd~~~~GK~g~Dl~egK~T~p~l~al~~~~~~~~~~l~~~~~~~~~~~~~~v~~li~~~g~~~~~~~~~~~~~~~ 338 (367)
T 1uby_A 259 YLDCFGDPALTGAVGTDIQDNKCSWLVVQCLQRVTPEQRQLLEDNYGRKEPEKVAKVKELYEAVGMRAAFQQYEESSYRR 338 (367)
T ss_dssp HHHHHCCTTCSSCCCCCSSSCCCCHHHHHHHHHCCHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTHHHHHHHHHHHHHHH
T ss_pred HHHhcCChhhcCCchhhHHcCCchHHHHHHHHhCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCcHHHHHHHHHHHHHH
Confidence 9999987643 67999999999998776543 22467889999
Q ss_pred HHHHHhhccCCCCChHHHHHHHHHHHhccc
Q 019903 299 AKEELDRFKKYGDNVLPLYSFIDYAADREF 328 (334)
Q Consensus 299 A~~~L~~lp~~~~~~~~L~~l~~~~~~R~~ 328 (334)
|++.|+.+|+ ++.++.|..+++++.+|.+
T Consensus 339 A~~~L~~lp~-~~~k~~L~~l~~~i~~R~~ 367 (367)
T 1uby_A 339 LQELIEKHSN-RLPKEIFLGLAQKIYKRQK 367 (367)
T ss_dssp HHHHHHHHCS-SSCTHHHHHHHHHHCCCCC
T ss_pred HHHHHHhCCC-cHHHHHHHHHHHHHHhCcC
Confidence 9999999997 7889999999999999975
No 44
>2q58_A Fragment, farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, structural genomics, structur genomics consortium, SGC; HET: ZOL; 2.37A {Cryptosporidium parvum} PDB: 2o1o_A*
Probab=100.00 E-value=2.7e-54 Score=419.23 Aligned_cols=284 Identities=17% Similarity=0.119 Sum_probs=219.1
Q ss_pred ccccchhcHHHHHHHHHHHHHHHHHHhhc-cCC----chhHHHHHHHhhhcCCCCcchHHHHHHHHHHhCCC----chhh
Q 019903 34 QLRSTQFDLKTYWTTLITEIDQNLEKAIT-VKY----PEQIYESMRYSVLAKGTKRAPPVMCVAACELFGVN----RIAA 104 (334)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~i~~~L~~~~~-~~~----~~~l~~~~~y~~~~~gGKrlRp~l~ll~~~~~g~~----~~~~ 104 (334)
+...+..+|..|+......|++.|++.-- ... -.++.++++|.+ +||||+||+|++++++++|+. .+.+
T Consensus 20 ~~~~~~~df~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~l~Y~~--~GGKrlRp~l~~~~~~~~~~~~~~~~e~~ 97 (368)
T 2q58_A 20 QGEYDYTDFINYYDKFKVIVYNVLKKLPLNDEIRKPVIEYYLNCIDYNV--KKGKHIRGKILVLISSLSSAYSNIKRDSI 97 (368)
T ss_dssp ---CCCTTGGGTHHHHHHHHHTTCCCCCSSCSTTCCHHHHHHHHHHHHT--TCSTTTTTC-CHHHHTTTTCCCSSSHHHH
T ss_pred cccchHHHHHHHHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHhcCC--CCccchhHHHHHHHHHHhCCCccCCHHHH
Confidence 34445566777777766666666654211 111 245778899987 599999999999999999863 3678
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCCcCChHHHHHHHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHH
Q 019903 105 FPTACALEMVHAASLIHDDLPCMDDDPSRRGQPSNHTVYGVDIAILAGDALFPLGFQHIVSHTPPHLVPEPRVLRVIAEI 184 (334)
Q Consensus 105 ~~lA~avEliH~asLIhDDIp~iD~s~~RRG~pt~h~~~G~~~Avl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~l~~~~ 184 (334)
+.+||||||||+|||||||| ||+|++|||+||+|++||+++|||+||+|++.||+++.+.... .+.+...+++..+
T Consensus 98 ~~la~aiEliH~asLiHDDi--mD~s~~RRG~pt~h~~~G~~~AIl~Gd~L~~~a~~~l~~~~~~--~~~~~~~~~~~~~ 173 (368)
T 2q58_A 98 YLLGWVVEAIQALILIADDI--MDSGKFRRGAPCWYIVHGQSNAINDIFFLKMLSLSLIFELSSV--FGNDIVMKIQKIY 173 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--HTTCCEETTEECHHHHTHHHHHHHHHHHHHHHHHHHHTTTHHH--HCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhc--ccCCCCCCCCCccccCcchhhHHHHHHHHHHHHHHHHHHhccc--cChHHHHHHHHHH
Confidence 89999999999999999999 9999999999999999999999999999999999998764311 2334445555555
Q ss_pred HHHHhhhhhhhHhhhhccC--------ChhHHHHHHHhhHHHH-HHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHHHh
Q 019903 185 ARAVGSTGMAAGQFLDLEG--------EPNLVEFVQEKKFGEM-SECSAVCGGFLAG--ADDDEIQSLRRYGRAVGVLYQ 253 (334)
Q Consensus 185 ~~~~~~~~~~~GQ~lDl~~--------~~~~y~~i~~~KTa~L-f~~a~~lGa~lag--~~~~~~~~l~~~G~~lG~afQ 253 (334)
.++. ..++.||.+|+.+ +.+.|..|+.+|||.| |.+|+.+|++++| ++++.++.+++||.++|+|||
T Consensus 174 ~~~~--~~~~~GQ~lDl~~~~~~~~~~~~e~y~~ii~~KTa~l~~~~~~~~g~~~ag~~~~~~~~~~l~~~g~~lG~aFQ 251 (368)
T 2q58_A 174 NESI--FFTVLGQHLDLSYFDLSKADKISERYFSMVEMKTSRYTFYMPVFFGLTLSEIQVSSAQLNLIEAILYKLGEFYQ 251 (368)
T ss_dssp HHHH--HHHHHHHHHHHCSCCCSSCSSHHHHHHHHHHHHTHHHHTHHHHHHHHHHSCCCCCCSSTTTHHHHHHHHHHHHH
T ss_pred HHHH--HHhhhhHHHHHHhhhcccCCchHHHHHHHHHHHhccccchHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHH
Confidence 5543 4678999999865 3568999999999998 7999999999998 566777899999999999999
Q ss_pred HHhhHhhhhcCCCCCchHHhhcCchHHHHhH--------------------------------HHHHHHHHHHHHHHHHH
Q 019903 254 VVDDILEAKAQTPRDEEKKKKKGKSYVAFYG--------------------------------VEKAMEVAEELRAKAKE 301 (334)
Q Consensus 254 i~DD~lD~~~~~~~~~~Dl~~~k~t~~~~~g--------------------------------le~a~~~a~~~~~~A~~ 301 (334)
|+||++|+++. +..|+|+.+||+|||.+++ .+.+.+.++++.+++.+
T Consensus 252 I~DDiLD~~~g-K~~g~Dl~egK~T~p~i~al~~~~~~~r~~L~~~~~~~~~~vk~l~~~l~~~~~~~ey~~~~~~~~~~ 330 (368)
T 2q58_A 252 VHNDVSDYLFN-DSNADDICRFKLTWPLQKSFEIADEEMKLKISENYGKNSSLVKDCYNLLKINEHYLEYQRNALDYLIK 330 (368)
T ss_dssp HHHHHHHHHSC-CCSSCTTTSCCCCHHHHSSTTTCCHHHHHHHHHHTTTCHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhcccC-CCCCchHhcCCcHHHHHHHHHhCCHHHHHHHHHHhCCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 99999999874 4578999999999997643 23344566777888888
Q ss_pred HHhhccCCCCChHHHH----HHHHHHHhcc
Q 019903 302 ELDRFKKYGDNVLPLY----SFIDYAADRE 327 (334)
Q Consensus 302 ~L~~lp~~~~~~~~L~----~l~~~~~~R~ 327 (334)
.++.+|. ...++.|. .|+++++.|+
T Consensus 331 ~i~~l~~-~~~k~~l~~ll~kI~~~~~~rk 359 (368)
T 2q58_A 331 LVKDITD-DSLQKVFIHLIHQISELITNSR 359 (368)
T ss_dssp HHTTCSC-HHHHHHHHHHHHHHHHHHCC--
T ss_pred HHHhccc-hhHHHHHHHHHHHHHHHHHHhh
Confidence 8998886 44455444 4555555554
No 45
>4fp4_A Polyprenyl synthetase; isoprenoid synthesis, isoprenoid diphosphate synthase, trans; HET: GER UNL; 2.00A {Pyrobaculum calidifontis}
Probab=100.00 E-value=1.1e-50 Score=379.56 Aligned_cols=205 Identities=24% Similarity=0.349 Sum_probs=175.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHhhhcCCCCcchHHHHHHHHHHhCC---CchhhHHHHHHHHHHHHHH
Q 019903 42 LKTYWTTLITEIDQNLEKAITVKYPEQIYESMRYSVLAKGTKRAPPVMCVAACELFGV---NRIAAFPTACALEMVHAAS 118 (334)
Q Consensus 42 ~~~~~~~~~~~i~~~L~~~~~~~~~~~l~~~~~y~~~~~gGKrlRp~l~ll~~~~~g~---~~~~~~~lA~avEliH~as 118 (334)
+...++..++.|++.|++.++...++.+.++++|.+.. ||||+||.|++++++++|+ +.+.+..+|+++||||+||
T Consensus 6 l~~~i~~~l~~ve~~L~~~l~~~~~~~l~~~~~y~~~~-gGKrlRp~Lvll~~~~~g~~~~~~~~~~~~A~aiEliH~aS 84 (285)
T 4fp4_A 6 LPPEVLAALERVKARLNKVGEELEPISLRKAVRHYIET-PGKLLRPLLLLTFTYSIDRRSIMDPRILEAAAIVELLHVVS 84 (285)
T ss_dssp CCHHHHHHHHHHHHHHHTTTTTCSSHHHHHHHHHHHHS-CCCCHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcCcHHHHHHHHHHHhC-CCCcHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHHHHH
Confidence 45678888999999999999876456899999998874 9999999999999999998 7888999999999999999
Q ss_pred HHHhCCCCCCCCCCCCCCCCCCCcCChHHHHHHHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHhhhhhhhHhh
Q 019903 119 LIHDDLPCMDDDPSRRGQPSNHTVYGVDIAILAGDALFPLGFQHIVSHTPPHLVPEPRVLRVIAEIARAVGSTGMAAGQF 198 (334)
Q Consensus 119 LIhDDIp~iD~s~~RRG~pt~h~~~G~~~Avl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~GQ~ 198 (334)
|||||| ||+|++|||+||+|++||+++|||+||+|++.||+.+++.. . .+++++.+. + .+++.||.
T Consensus 85 LIHDDI--mD~s~~RRG~Pt~h~~~G~~~AIlaGD~Ll~~A~~~l~~~~------~-~~~~~ls~~---~--~~~~~GQ~ 150 (285)
T 4fp4_A 85 LLQDDV--MDQHDQRRGIKTPRAMYGDGRAIVASDWLIAESIKMAVNLG------A-DVVTYLADV---A--QRLSVGQA 150 (285)
T ss_dssp HHHHHH--HTTCSBSSSSBCHHHHHCHHHHHHHHHHHHHHHHHHHHTTC------H-HHHHHHHHH---H--HHHHHHHH
T ss_pred HHHCCC--CCCCCCCCCCCcHHHhcChHHHHHHHHHHHHHHHHHHHHhh------H-HHHHHHHHH---H--HHHHHhHH
Confidence 999999 99999999999999999999999999999999999998742 2 444555443 3 36899999
Q ss_pred hhccCChhHHHHHHHhhHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHhhHhhhhcCC
Q 019903 199 LDLEGEPNLVEFVQEKKFGEMSECSAVCGGFLAGADDDEIQSLRRYGRAVGVLYQVVDDILEAKAQT 265 (334)
Q Consensus 199 lDl~~~~~~y~~i~~~KTa~Lf~~a~~lGa~lag~~~~~~~~l~~~G~~lG~afQi~DD~lD~~~~~ 265 (334)
+|+.+.... |+++|||+||++||++|++++|++ +.++.+++||.++|+||||+||++|++++.
T Consensus 151 lDl~~~~~~---~i~~KTg~Lf~~a~~lGa~lag~~-~~~~~l~~~G~~lGlAFQI~DDiLD~~~d~ 213 (285)
T 4fp4_A 151 LDLEGERDK---AAEFKTAPLIEAALVMPLVILGRR-ELIETAKKLGTKLGILYQYSDDYSDENVER 213 (285)
T ss_dssp HHHTTCHHH---HHHHHTHHHHHHHHHHHHHHHTCG-GGHHHHHHHHHHHHHHTTCC---------C
T ss_pred HHHhccccc---hhhcCcHHHHHHHHHHHHHHcCCh-HHHHHHHHHHHHHHHHHHHHHHHhccCCCc
Confidence 999885443 999999999999999999999999 888999999999999999999999999765
No 46
>3vj8_A Squalene synthase; farnesyl-diphosphate farnesyltransferase, head-TO-head synth cholesterol biosynthesis, oxidoreductase, transferase; 1.52A {Homo sapiens} PDB: 3vj9_A 3vja_A 3vjb_A 3vjc_A* 3v66_A* 3lee_A* 3q2z_A* 3q30_A* 3asx_A* 1ezf_A*
Probab=95.17 E-value=1.4 Score=41.61 Aligned_cols=115 Identities=11% Similarity=-0.032 Sum_probs=74.2
Q ss_pred hhhHhhhhccC---ChhHHHHHHHhhHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHhhHhhhhcCCC---
Q 019903 193 MAAGQFLDLEG---EPNLVEFVQEKKFGEMSECSAVCGGFLAGADDDEIQSLRRYGRAVGVLYQVVDDILEAKAQTP--- 266 (334)
Q Consensus 193 ~~~GQ~lDl~~---~~~~y~~i~~~KTa~Lf~~a~~lGa~lag~~~~~~~~l~~~G~~lG~afQi~DD~lD~~~~~~--- 266 (334)
|..|-..|+.. +.++++..+++-.|....+.+.+-..-...++. .......+.++|.|+|+.|=+.|+-.+-.
T Consensus 123 m~~gm~~dl~~~~~t~~~L~~Yc~~vAg~VG~l~~~l~~~~~~~~~~-~~~~~~~A~~lG~AlQltNilRDv~eD~~~gR 201 (343)
T 3vj8_A 123 MGIGMAEFLDKHVTSEQEWDKYCHYVAGLVGIGLSRLFSASEFEDPL-VGEDTERANSMGLFLQKTNIIRDYLEDQQGGR 201 (343)
T ss_dssp HHHHHHHGGGCCCCSHHHHHHHHHHHTHHHHHHHHHHHHHHTSSCHH-HHHCHHHHHHHHHHHHHHHHHHTHHHHHHTTC
T ss_pred HHHHHHHhccCCCCCHHHHHHHHHhCcHHHHHHHHHHhCCCCCccch-hhhHHHHHHHHHHHHHHHHHHHHhHHHHhCCC
Confidence 34455555543 777887777777777766666554332222232 34566889999999999998888743211
Q ss_pred ------------CCchHHhhcCchHHHHhHHHHHHHHHHHHHHHHHHHHhhccC
Q 019903 267 ------------RDEEKKKKKGKSYVAFYGVEKAMEVAEELRAKAKEELDRFKK 308 (334)
Q Consensus 267 ------------~~~~Dl~~~k~t~~~~~gle~a~~~a~~~~~~A~~~L~~lp~ 308 (334)
...+|+..++.+-.....+..-...++.+.++|...+..+|.
T Consensus 202 ~YlP~e~l~~~g~~~~dl~~~~~~~~~~~~l~~l~~~A~~~~~~a~~~~~~L~~ 255 (343)
T 3vj8_A 202 EFWPQEVWSRYVKKLGDFAKPENIDLAVQCLNELITNALHHIPDVITYLSRLRN 255 (343)
T ss_dssp CCSCHHHHTTTCSSGGGGGSGGGHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCC
T ss_pred eeCCHHHHHHcCCCHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 012455555554444445666677888899999999999876
No 47
>3acx_A Dehydrosqualene synthase; CRTM, carotenoid biosynthesis, staphyloxanthin biosynthesis, transferase, head-TO-head condensation, inhibitor; HET: 673; 1.31A {Staphylococcus aureus} PDB: 2zcp_A* 2zcq_A* 2zcr_A* 2zcs_A* 2zy1_A* 3acw_A* 2zco_A* 3acy_A* 3npr_A* 3nri_A* 3tfn_A* 3tfp_A* 3tfv_A* 3adz_A* 3lgz_B* 3vjd_A* 3vje_A* 3ae0_A* 4ea2_A* 4e9u_A* ...
Probab=94.21 E-value=0.45 Score=43.75 Aligned_cols=110 Identities=12% Similarity=0.031 Sum_probs=69.8
Q ss_pred hhhHhhhhccC----ChhHHHHHHHhhHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHhhHhhhhcCCCC-
Q 019903 193 MAAGQFLDLEG----EPNLVEFVQEKKFGEMSECSAVCGGFLAGADDDEIQSLRRYGRAVGVLYQVVDDILEAKAQTPR- 267 (334)
Q Consensus 193 ~~~GQ~lDl~~----~~~~y~~i~~~KTa~Lf~~a~~lGa~lag~~~~~~~~l~~~G~~lG~afQi~DD~lD~~~~~~~- 267 (334)
++.|...|+.. |.++++..+++-.|....+.+.+ ++..+. +.....+.++|.|+|+.|=+.|+-.+...
T Consensus 113 li~g~~~Dl~~~~~~t~~dL~~Yc~~vAg~VG~l~~~l---~g~~~~---~~~~~~A~~lG~AlQltNilRDv~eD~~~g 186 (293)
T 3acx_A 113 LIDTVYKDQHFTMFETDAELFGYCYGVAGTVGEVLTPI---LSDHET---HQTYDVARRLGESLQLINILRDVGEDFENE 186 (293)
T ss_dssp HHHHHHHHTTCCCCSSHHHHHHHHHHHTHHHHHHHHHH---HCSSCC---HHHHHHHHHHHHHHHHHHHHHCHHHHHHTT
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHhhHHHHHHHHHH---hCCCCc---HHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 45566677764 67788777777667766655543 232231 23567999999999999977776422110
Q ss_pred --------------CchHHhhcCchHHHHhHHHHHHHHHHHHHHHHHHHHhhccC
Q 019903 268 --------------DEEKKKKKGKSYVAFYGVEKAMEVAEELRAKAKEELDRFKK 308 (334)
Q Consensus 268 --------------~~~Dl~~~k~t~~~~~gle~a~~~a~~~~~~A~~~L~~lp~ 308 (334)
..+|+..++.+-.....+..--..++.+.++|+..+..+|.
T Consensus 187 R~YLP~d~l~~~gv~~e~l~~~~~~~~~~~~~~~l~~~A~~~~~~a~~~~~~lp~ 241 (293)
T 3acx_A 187 RIYFSKQRLKQYEVDIAEVYQNGVNNHYIDLWEYYAAIAEKDFRDVMDQIKVFSI 241 (293)
T ss_dssp CCCSCHHHHHHHTCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHTGGGSCT
T ss_pred cEEeCHHHHHHcCCCHHHhcccCCCHHHHHHHHHHHHHHHHHHHHHHHhHHhCCH
Confidence 11344444433323334555667888899999999999986
No 48
>4hd1_A Squalene synthase HPNC; MCSG, structural genomics, PSI-biology, midwest center for S genomics, transferase; 2.40A {Alicyclobacillus acidocaldarius subsp}
Probab=93.14 E-value=0.65 Score=42.77 Aligned_cols=110 Identities=8% Similarity=-0.011 Sum_probs=70.4
Q ss_pred hhhhHhhhhccC----ChhHHHHHHHhhHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHhhHhhhhcCCC-
Q 019903 192 GMAAGQFLDLEG----EPNLVEFVQEKKFGEMSECSAVCGGFLAGADDDEIQSLRRYGRAVGVLYQVVDDILEAKAQTP- 266 (334)
Q Consensus 192 ~~~~GQ~lDl~~----~~~~y~~i~~~KTa~Lf~~a~~lGa~lag~~~~~~~~l~~~G~~lG~afQi~DD~lD~~~~~~- 266 (334)
.++.|...|+.. +.+++...+++-.|....+.+. +++..+++ ...++.++|.|+|+.|=+.|+..+-.
T Consensus 108 ~li~g~~~Dl~~~~~~t~~dL~~Y~~~vAg~VG~m~~~---i~g~~~~~----~~~~A~~lG~AlQltNilRDv~eD~~~ 180 (294)
T 4hd1_A 108 RLIEANRRDQRKHTYDTWEDLRDYCRYSADPVGRLVLG---IFGCLDDE----RARLSDATCTALQVANHMQDIDRDLAL 180 (294)
T ss_dssp HHHHHHHHHHHCSBCCSHHHHHHHHHHHTHHHHHHHHH---HTTCCSHH----HHHHHHHHHHHHHHHHHHHTHHHHHHT
T ss_pred HHHHHHHhccccCCCCCHHHHHHHHHhccchHHHHHHH---HhCCCCHH----HHHHHHHHHHHHHHHHHHHhchhhhcc
Confidence 466788888765 6677776666555555554443 33434433 34678999999999998888753221
Q ss_pred --------------CCchHHhhcCchHHHHhHHHHHHHHHHHHHHHHHHHHhhccC
Q 019903 267 --------------RDEEKKKKKGKSYVAFYGVEKAMEVAEELRAKAKEELDRFKK 308 (334)
Q Consensus 267 --------------~~~~Dl~~~k~t~~~~~gle~a~~~a~~~~~~A~~~L~~lp~ 308 (334)
...+|+..++.+-.....++.--..++.|.++|...+..+|.
T Consensus 181 gR~YlP~~~l~~~gv~~~dl~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~lp~ 236 (294)
T 4hd1_A 181 GRIYVPRADLEQFGATLDDIRARRATDGVRRCIALEVDRAQALFDEGRRLESLVPP 236 (294)
T ss_dssp TCBCSCHHHHHTTTCCHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSSCH
T ss_pred CceeCCHHHHHHcCCCHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH
Confidence 112455555544333334555567788888899988888875
No 49
>3rmg_A Octaprenyl-diphosphate synthase; structural genomics, protein structure initiative, isoprene biosynthesis, transferase; 2.30A {Bacteroides thetaiotaomicron}
Probab=77.87 E-value=9.6 Score=35.60 Aligned_cols=67 Identities=15% Similarity=0.105 Sum_probs=43.9
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhHHhhHhhhhcCCCCCchHHhhcCchHHHHhHHHHHHHHHHHHHHHHHHHHhhc
Q 019903 232 GADDDEIQSLRRYGRAVGVLYQVVDDILEAKAQTPRDEEKKKKKGKSYVAFYGVEKAMEVAEELRAKAKEELDRF 306 (334)
Q Consensus 232 g~~~~~~~~l~~~G~~lG~afQi~DD~lD~~~~~~~~~~Dl~~~k~t~~~~~gle~a~~~a~~~~~~A~~~L~~l 306 (334)
|.+.+....+...-+.+=.++-|.||+.| ++++++|++|+-..+|...|--..+-+..+|.+.+...
T Consensus 63 g~~~~~~~~~A~aiEliH~asLiHDDI~D--------~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~ 129 (334)
T 3rmg_A 63 GAVTPATLHAAVSLELLHTASLVHDDVVD--------ESTERRGQLSVNAIFNNKVSVLAGDYLLATSLVHAEQT 129 (334)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHHHHHHHC-----------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHcCccC--------CCCCcCCCccHHHhcChHHHHHHHHHHHHHHHHHHHhC
Confidence 44445555666677888889999999976 46788999999988887777767777777888777654
No 50
>3mzv_A Decaprenyl diphosphate synthase; transferase, structural genomics, PSI-2, protein structure initiative; 1.90A {Rhodobacter capsulatus}
Probab=76.62 E-value=7.9 Score=36.30 Aligned_cols=72 Identities=13% Similarity=0.116 Sum_probs=50.1
Q ss_pred HHhcCCCHHHHHHHHHHHHHHHHHHhHHhhHhhhhcCCCCCchHHhhcCchHHHHhHHHHHHHHHHHHHHHHHHHHhhcc
Q 019903 228 GFLAGADDDEIQSLRRYGRAVGVLYQVVDDILEAKAQTPRDEEKKKKKGKSYVAFYGVEKAMEVAEELRAKAKEELDRFK 307 (334)
Q Consensus 228 a~lag~~~~~~~~l~~~G~~lG~afQi~DD~lD~~~~~~~~~~Dl~~~k~t~~~~~gle~a~~~a~~~~~~A~~~L~~lp 307 (334)
+.+.|.+.+....+...-+.+=.++-|.||+.| ++++++|++|+-..+|...|--..+-+..+|.+.+...+
T Consensus 65 ~~~~g~~~~~~~~~A~aiEliH~asLiHDDI~D--------~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~ 136 (341)
T 3mzv_A 65 ARLVGYGGPFHVHLAATVEFIHTATLLHDDVVD--------ESRQRRGRPTANLLWDNKSSVLVGDYLFARSFQLMTDTG 136 (341)
T ss_dssp HHHTTCCCSHHHHHHHHHHHHHHHHHHHHHC--------------CTTSCCHHHHSCHHHHHHHHHHHHHHHHHHHGGGC
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHHHHHcCccC--------CCCCcCCCccHHHhcChHHHHHHHHHHHHHHHHHHHhCC
Confidence 333444444455666777788889999999976 467889999998888887777777777888888887653
No 51
>4fp4_A Polyprenyl synthetase; isoprenoid synthesis, isoprenoid diphosphate synthase, trans; HET: GER UNL; 2.00A {Pyrobaculum calidifontis}
Probab=75.52 E-value=11 Score=34.41 Aligned_cols=66 Identities=18% Similarity=0.210 Sum_probs=51.8
Q ss_pred CHHHHHHHHHHHHHHHHHHhHHhhHhhhhcCCCCCchHHhhcCchHHHHhHHHHHHHHHHHHHHHHHHHHhhcc
Q 019903 234 DDDEIQSLRRYGRAVGVLYQVVDDILEAKAQTPRDEEKKKKKGKSYVAFYGVEKAMEVAEELRAKAKEELDRFK 307 (334)
Q Consensus 234 ~~~~~~~l~~~G~~lG~afQi~DD~lD~~~~~~~~~~Dl~~~k~t~~~~~gle~a~~~a~~~~~~A~~~L~~lp 307 (334)
+.+.+..+...-+.+=.+.-|.||+.| ++++++|++|+-..+|...|--..+-+..+|.+.|..++
T Consensus 66 ~~~~~~~~A~aiEliH~aSLIHDDImD--------~s~~RRG~Pt~h~~~G~~~AIlaGD~Ll~~A~~~l~~~~ 131 (285)
T 4fp4_A 66 MDPRILEAAAIVELLHVVSLLQDDVMD--------QHDQRRGIKTPRAMYGDGRAIVASDWLIAESIKMAVNLG 131 (285)
T ss_dssp GCHHHHHHHHHHHHHHHHHHHHHHHHT--------TCSBSSSSBCHHHHHCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred ChHHHHHHHHHHHHHHHHHHHHCCCCC--------CCCCCCCCCcHHHhcChHHHHHHHHHHHHHHHHHHHHhh
Confidence 334445666677788889999999976 356788999999999888787777888888888888763
No 52
>2q80_A Geranylgeranyl pyrophosphate synthetase; isoprenoid pathway, isopentenyl transferase, structural GENO structural genomics consortium, SGC; HET: GRG; 2.70A {Homo sapiens} SCOP: a.128.1.1
Probab=75.26 E-value=16 Score=33.51 Aligned_cols=68 Identities=15% Similarity=0.185 Sum_probs=52.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhHHhhHhhhhcCCCCCchHHhhcCchHHHHhHHHHHHHHHHHHHHHHHHHHhhcc
Q 019903 232 GADDDEIQSLRRYGRAVGVLYQVVDDILEAKAQTPRDEEKKKKKGKSYVAFYGVEKAMEVAEELRAKAKEELDRFK 307 (334)
Q Consensus 232 g~~~~~~~~l~~~G~~lG~afQi~DD~lD~~~~~~~~~~Dl~~~k~t~~~~~gle~a~~~a~~~~~~A~~~L~~lp 307 (334)
|.+.+.+..+...-+.+=.+.-|.||+.| ++++++|++|+-..+|...|--..+-....|.+.+..++
T Consensus 41 ~~~~~~~~~~A~avEliH~asLiHDDi~D--------~s~~RRG~pt~h~~~G~~~AIl~GD~l~~~a~~~l~~~~ 108 (301)
T 2q80_A 41 KVPEDKLQIIIEVTEMLHNASLLIDDIED--------NSKLRRGFPVAHSIYGIPSVINSANYVYFLGLEKVLTLD 108 (301)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHH--------TCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHccccC--------CCCCCCCCcchhhccCcHHHHHHHHHHHHHHHHHHHHCC
Confidence 44555555666677778888899999977 356788999998888887777777777888888887764
No 53
>3nf2_A Putative polyprenyl synthetase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; 2.20A {Streptomyces coelicolor}
Probab=74.67 E-value=6.8 Score=36.95 Aligned_cols=74 Identities=18% Similarity=0.150 Sum_probs=55.6
Q ss_pred HHHhcCCCHHHHHHHHHHHHHHHHHHhHHhhHhhhhcCCCCCchHHhhcCchHHHHhHHHHHHHHHHHHHHHHHHHHhhc
Q 019903 227 GGFLAGADDDEIQSLRRYGRAVGVLYQVVDDILEAKAQTPRDEEKKKKKGKSYVAFYGVEKAMEVAEELRAKAKEELDRF 306 (334)
Q Consensus 227 Ga~lag~~~~~~~~l~~~G~~lG~afQi~DD~lD~~~~~~~~~~Dl~~~k~t~~~~~gle~a~~~a~~~~~~A~~~L~~l 306 (334)
++.+.|.+.+....+...-+.+=.++-|.||+.| ++++++|++|+-..+|...|--..+-+...|.+.|..+
T Consensus 65 ~~~~~g~~~~~~~~~A~avEliH~asLiHDDI~D--------~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~ 136 (352)
T 3nf2_A 65 SAEVTGAAPEVGVPGAVAVELVHNFSLLHDDLMD--------GDEQRRHRDTVWKVHGPAQAILVGDALFALANEVLLEL 136 (352)
T ss_dssp HHHTTTCCGGGGHHHHHHHHHHHHHHHHHHHHHH--------TCCEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHHHHHcCCCC--------CCCCCCCCccHHHhcChHHHHHHHHHHHHHHHHHHHhC
Confidence 3444455555555666677788889999999987 35678899999888888777777777788888888876
Q ss_pred cC
Q 019903 307 KK 308 (334)
Q Consensus 307 p~ 308 (334)
+.
T Consensus 137 ~~ 138 (352)
T 3nf2_A 137 GT 138 (352)
T ss_dssp CS
T ss_pred CC
Confidence 53
No 54
>1wmw_A Geranylgeranyl diphosphate synthetase; GGPP, prenyl diphosphate synthase, structural genom riken structural genomics/proteomics initiative; 1.55A {Thermus thermophilus}
Probab=72.23 E-value=19 Score=33.44 Aligned_cols=70 Identities=13% Similarity=0.039 Sum_probs=52.0
Q ss_pred HhcCCCHHHHHHHHHHHHHHHHHHhHHhhHhhhhcCCCCCchHHhhcCchHHHHhHHHHHHHHHHHHHHHHHHHHhhc
Q 019903 229 FLAGADDDEIQSLRRYGRAVGVLYQVVDDILEAKAQTPRDEEKKKKKGKSYVAFYGVEKAMEVAEELRAKAKEELDRF 306 (334)
Q Consensus 229 ~lag~~~~~~~~l~~~G~~lG~afQi~DD~lD~~~~~~~~~~Dl~~~k~t~~~~~gle~a~~~a~~~~~~A~~~L~~l 306 (334)
...|.+.+....+...-+.+=.++=|.||+.| ++++++|++|+-..+|...|--..+-+...|.+.|..+
T Consensus 52 ~~~~~~~~~~~~~A~avEliH~asLihDDi~D--------~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~ 121 (330)
T 1wmw_A 52 LAHGAPLEAGLEAATALELFQNWVLVHDDIED--------GSEERRGRPALHRLHPMPLALNAGDAMHAEMWGLLAEG 121 (330)
T ss_dssp HHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHH--------TCCEETTEECHHHHSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHHHccccc--------CCCCCCCCCccccccCchHHHHHHHHHHHHHHHHHHhc
Confidence 33445555555666677777888999999977 35678899998888887777777777777788777765
No 55
>3pko_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; HET: CIT; 1.98A {Lactobacillus brevis} PDB: 3n3d_A
Probab=72.02 E-value=21 Score=33.19 Aligned_cols=71 Identities=11% Similarity=0.125 Sum_probs=54.8
Q ss_pred HhcC-CCHHHHHHHHHHHHHHHHHHhHHhhHhhhhcCCCCCchHHhhcCchHHHHhHHHHHHHHHHHHHHHHHHHHhhcc
Q 019903 229 FLAG-ADDDEIQSLRRYGRAVGVLYQVVDDILEAKAQTPRDEEKKKKKGKSYVAFYGVEKAMEVAEELRAKAKEELDRFK 307 (334)
Q Consensus 229 ~lag-~~~~~~~~l~~~G~~lG~afQi~DD~lD~~~~~~~~~~Dl~~~k~t~~~~~gle~a~~~a~~~~~~A~~~L~~lp 307 (334)
.+++ .+.+.+..+...-+.+=.++=|.||+.| ++++++|++|+-..+|...|--..+-+...|.+.|..+.
T Consensus 68 ~~g~~~~~~~~~~~A~aiEliH~asLiHDDi~D--------~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~ 139 (334)
T 3pko_A 68 TFGNAATPAQLQAGAAAIEILHVGTLIHDDVID--------DSPTRRGVRTIQMTYGQRNAIYAGDFMFTVYFDQVLKST 139 (334)
T ss_dssp TTCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHH--------TCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHcCCCCHHHHHHHHHHHHHHHHHHHHhCccCC--------CCCCcCCCccHHHHcCchHHHHHHHHHHHHHHHHHHhcC
Confidence 3444 4666666677777888889999999977 356788999998888888777777777888888887764
No 56
>2e8v_A Geranylgeranyl pyrophosphate synthetase; prenyltransferase, farnesyl pyrophosphate, bisphosphonate; HET: GRG; 1.80A {Saccharomyces cerevisiae} PDB: 2e8t_A* 2e8u_A* 2dh4_A* 2e8w_A* 2e8x_A* 2e90_A* 2e91_A* 2e92_A* 2e93_A* 2e94_A* 2e95_A* 2z4v_A* 2z4w_A* 2z4x_A* 2z4y_A* 2z4z_A* 2z50_A* 2z52_A* 2z78_A* 2z7h_A* ...
Probab=69.77 E-value=21 Score=33.35 Aligned_cols=69 Identities=12% Similarity=0.199 Sum_probs=53.1
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhHHhhHhhhhcCCCCCchHHhhcCchHHHHhHHHHHHHHHHHHHHHHHHHHhhccC
Q 019903 232 GADDDEIQSLRRYGRAVGVLYQVVDDILEAKAQTPRDEEKKKKKGKSYVAFYGVEKAMEVAEELRAKAKEELDRFKK 308 (334)
Q Consensus 232 g~~~~~~~~l~~~G~~lG~afQi~DD~lD~~~~~~~~~~Dl~~~k~t~~~~~gle~a~~~a~~~~~~A~~~L~~lp~ 308 (334)
|.+.+.+..+...-+.+=.+.=|.||+.| ++++++|++|+-..+|...|--..+-....|.+.+..++.
T Consensus 56 ~~~~~~~~~~A~avEliH~asLiHDDI~D--------~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~~ 124 (340)
T 2e8v_A 56 NLPKDQLAIVSQIVELLHNSSLLIDDIED--------NAPLRRGQTTSHLIFGVPSTINTANYMYFRAMQLVSQLTT 124 (340)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHT--------TCSEETTEECHHHHTCHHHHHHHHHHHHHHHHHHGGGGCC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhCcccc--------CCCCCCCCcchhhccCchHHHHHHHHHHHHHHHHHHHcCC
Confidence 44555445566666777778889999976 3568889999998888887877888888888888887653
No 57
>3aqb_B Component B of hexaprenyl diphosphate synthase; prenyltransferase, transferase; 2.40A {Micrococcus luteus} PDB: 3aqc_B*
Probab=68.08 E-value=13 Score=34.46 Aligned_cols=72 Identities=18% Similarity=0.252 Sum_probs=53.0
Q ss_pred HHHhcCCCHHHHHHHHHHHHHHHHHHhHHhhHhhhhcCCCCCchHHhhcCchHHHHhHHHHHHHHHHHHHHHHHHHHhhc
Q 019903 227 GGFLAGADDDEIQSLRRYGRAVGVLYQVVDDILEAKAQTPRDEEKKKKKGKSYVAFYGVEKAMEVAEELRAKAKEELDRF 306 (334)
Q Consensus 227 Ga~lag~~~~~~~~l~~~G~~lG~afQi~DD~lD~~~~~~~~~~Dl~~~k~t~~~~~gle~a~~~a~~~~~~A~~~L~~l 306 (334)
++.+.|.+.+....+...-+.+=.+.-|.||+.| ++++++|++|+-..+|...|--..+-+...|.+.|..+
T Consensus 55 ~~~~~g~~~~~~~~~A~avEliH~asLiHDDi~D--------~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~ 126 (325)
T 3aqb_B 55 SGFLNDTQKDDLIRTAVSLELVHMASLVHDDYID--------NSDMRRGNTSVHIAFDKDTAIRTGHFLLARALQNIATI 126 (325)
T ss_dssp HHTTSSCCCHHHHHHHHHHHHHHHHHHHHHHHHH--------TCCEETTEECHHHHTCHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHhCCChHHHHHHHHHHHHHHHHHHHhCcccc--------CCCCCCCCCCcccccChHHHHHHHHHHHHHHHHHHHhC
Confidence 3344444444444566666777788899999987 35678899999888888877777887888888888765
No 58
>1v4e_A Octoprenyl-diphosphate synthase; trans-type prenyltransferase, thermophilic; 2.28A {Thermotoga maritima} SCOP: a.128.1.1 PDB: 1v4j_A 1wkz_A 1vg2_A 1wl3_A 1wl0_A 1wl2_A 1v4h_A 1v4i_A 1v4k_A 2azl_A 1wl1_A 1vg4_A 1vg3_A 1vg6_A 1vg7_A
Probab=67.68 E-value=15 Score=33.60 Aligned_cols=65 Identities=12% Similarity=0.149 Sum_probs=47.7
Q ss_pred CHHHHHHHHHHHHHHHHHHhHHhhHhhhhcCCCCCchHHhhcCchHHHHhHHHHHHHHHHHHHHHHHHHHhhc
Q 019903 234 DDDEIQSLRRYGRAVGVLYQVVDDILEAKAQTPRDEEKKKKKGKSYVAFYGVEKAMEVAEELRAKAKEELDRF 306 (334)
Q Consensus 234 ~~~~~~~l~~~G~~lG~afQi~DD~lD~~~~~~~~~~Dl~~~k~t~~~~~gle~a~~~a~~~~~~A~~~L~~l 306 (334)
+.+....+...-+.+=.+.=|.||+.| ++++++|++|+-..+|...|--..+-+...|.+.|..+
T Consensus 59 ~~~~~~~~A~avEliH~asLiHDDi~D--------~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~ 123 (299)
T 1v4e_A 59 IGEDAISSLAALELVHLASLLHDDVID--------GARFRRGKETINFMYGDKAAVAAGDLVLVSAFHTVEEI 123 (299)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHH--------TCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHHhhCCCCC--------CCCCCCCCCchhhhcCHHHHHHHHHHHHHHHHHHHHhC
Confidence 334344556666677778889999977 35678899998888887777666677777777777765
No 59
>1wy0_A Geranylgeranyl pyrophosphate synthetase; pyrococcus horikosh structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.20A {Pyrococcus horikoshii}
Probab=67.51 E-value=11 Score=35.18 Aligned_cols=70 Identities=20% Similarity=0.184 Sum_probs=53.0
Q ss_pred hcCCCHHHHHHHHHHHHHHHHHHhHHhhHhhhhcCCCCCchHHhhcCchHHHHhHHHHHHHHHHHHHHHHHHHHhhcc
Q 019903 230 LAGADDDEIQSLRRYGRAVGVLYQVVDDILEAKAQTPRDEEKKKKKGKSYVAFYGVEKAMEVAEELRAKAKEELDRFK 307 (334)
Q Consensus 230 lag~~~~~~~~l~~~G~~lG~afQi~DD~lD~~~~~~~~~~Dl~~~k~t~~~~~gle~a~~~a~~~~~~A~~~L~~lp 307 (334)
+.|.+.+....+...-+.+=.++-|.||+.| ++++++|++|+-..+|...|--..+-+...|.+.|..++
T Consensus 60 ~~g~~~~~~~~~A~avEliH~asLiHDDi~D--------~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~ 129 (342)
T 1wy0_A 60 AVGGDPLRAIYPAVAIELIHNYSLVHDDIMD--------MDETRRGKPTVHRIWGVNMAILAGDLLFSKAFEAVARAE 129 (342)
T ss_dssp TTTSCGGGGHHHHHHHHHHHHHHHHHHHHHH--------TCCCSTTSCCHHHHHCHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred HcCCCHHHHHHHHHHHHHHHHHHHHHCCccc--------CCCCCCCCCccccccChhHHHHHHHHHHHHHHHHHHHcc
Confidence 3344544444566667777788899999987 356788999999988888777777778888888888763
No 60
>3lmd_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, protein structure initiative, nysgrc; 1.90A {Corynebacterium glutamicum} PDB: 3q2q_A*
Probab=67.43 E-value=22 Score=33.53 Aligned_cols=73 Identities=12% Similarity=0.069 Sum_probs=42.7
Q ss_pred HHHhcC-CCHHHHHHHHHHHHHHHHHHhHHhhHhhhhcCCCCCchHHhhcCchHHHHhHHHHHHHHHHHHHHHHHHHHhh
Q 019903 227 GGFLAG-ADDDEIQSLRRYGRAVGVLYQVVDDILEAKAQTPRDEEKKKKKGKSYVAFYGVEKAMEVAEELRAKAKEELDR 305 (334)
Q Consensus 227 Ga~lag-~~~~~~~~l~~~G~~lG~afQi~DD~lD~~~~~~~~~~Dl~~~k~t~~~~~gle~a~~~a~~~~~~A~~~L~~ 305 (334)
++.+.| .+.+.+..+...-+.|=.+.-|.||+.| ++++++|++|+-..+|...|--..+-+...|.+.+..
T Consensus 85 ~~~~~~~~~~~~~~~~A~avEliH~asLIHDDImD--------~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~A~~~l~~ 156 (360)
T 3lmd_A 85 ASEFGEKPLSENVIKAAVVVEITHLATLYHDDVMD--------EASMRRGVPSANARWDNSVAILAGDILLAHASGLMSQ 156 (360)
T ss_dssp HHTTSSSTTCHHHHHHHHHHHHHHHHHHHHHHHHC-------------------CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCChHHHHHHHHHHHHHHHHHHHhCCCcC--------CCCCCCCCCcHHhhcChHHHHHHHHHHHHHHHHHHHH
Confidence 344445 4545455566677788889999999976 3678889998877777666666666666777777766
Q ss_pred cc
Q 019903 306 FK 307 (334)
Q Consensus 306 lp 307 (334)
++
T Consensus 157 ~~ 158 (360)
T 3lmd_A 157 LG 158 (360)
T ss_dssp HC
T ss_pred CC
Confidence 53
No 61
>4f62_A Geranyltranstransferase; enzyme function initiative, structural genomics; 2.10A {Marinomonas SP}
Probab=67.25 E-value=32 Score=31.80 Aligned_cols=68 Identities=12% Similarity=0.121 Sum_probs=47.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhHHhhH--hhhhcCCCCCchHHhhcCchHHHHhHHHHHHHHHHHHHHHHHHHHhhcc
Q 019903 232 GADDDEIQSLRRYGRAVGVLYQVVDDI--LEAKAQTPRDEEKKKKKGKSYVAFYGVEKAMEVAEELRAKAKEELDRFK 307 (334)
Q Consensus 232 g~~~~~~~~l~~~G~~lG~afQi~DD~--lD~~~~~~~~~~Dl~~~k~t~~~~~gle~a~~~a~~~~~~A~~~L~~lp 307 (334)
|.+.+....+...-+.|=.+.-|.||+ .| ++++++|++|+-..+|...|--..+-+...|.+.|..++
T Consensus 61 g~~~~~~~~~A~avEliH~aSLIHDDip~mD--------~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~Af~~l~~~~ 130 (317)
T 4f62_A 61 GDISSLTDASAAALESIHAYSLIHDDLPAMD--------NDELRRGKPTCHIQFDEATAILAGDALQTFAFELLSNPT 130 (317)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHHHHHSTTSC--------C-------CCHHHHSCHHHHHHHHHHHHHHHHHHHTCTT
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHCCccccc--------CCCCcCCCccHHhhcCHHHHHHHHHHHHHHHHHHHHhcc
Confidence 445455556666777888889999998 55 477899999999999888787777888889999988764
No 62
>1rtr_A Geranyltranstransferase; 2.50A {Staphylococcus aureus} SCOP: a.128.1.1
Probab=67.18 E-value=9.7 Score=35.03 Aligned_cols=83 Identities=12% Similarity=0.010 Sum_probs=52.4
Q ss_pred CCCcchHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHhCCCCCC------------CCCCCCCCCCCCCcCChHHH
Q 019903 81 GTKRAPPVMCVAACELFGVNRIAAFPTACALEMVHAASLIHDDLPCMD------------DDPSRRGQPSNHTVYGVDIA 148 (334)
Q Consensus 81 gGKrlRp~l~ll~~~~~g~~~~~~~~lA~avEliH~asLIhDDIp~iD------------~s~~RRG~pt~h~~~G~~~A 148 (334)
.|..++.. +.+++.+.|.+++....+...-+.+=.++-|.||+ .| .++.+.|++|+-..+|...|
T Consensus 178 Ta~L~~~~-~~~ga~lag~~~~~~~~l~~~g~~lG~aFQI~DDi--lD~~~d~~~~GK~~g~Dl~~gK~T~p~l~al~~a 254 (301)
T 1rtr_A 178 TGALLTFA-VMSAADIANVDDTTKEHLESYSYHLGMMFQIKDDL--LDCYGDEAKLGKKVGSDLENNKSTYVSLLGKDGA 254 (301)
T ss_dssp THHHHHHH-HHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHCC-------------CCHHHHHHHHHH
T ss_pred hHHHHHHH-HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHH--HHhcCCHHHhCCCcchHHHcCCCcHHHHHHHHHH
Confidence 34444432 23333444556665666666777888899999999 77 56788899998888888777
Q ss_pred HHHHHHHHHHHHHHHHhc
Q 019903 149 ILAGDALFPLGFQHIVSH 166 (334)
Q Consensus 149 vl~GD~L~~~a~~~l~~~ 166 (334)
--...-+...|.+.|...
T Consensus 255 ~~~a~~~~~~A~~~L~~l 272 (301)
T 1rtr_A 255 EDKLTYHRDAAVDELTQI 272 (301)
T ss_dssp HHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHhC
Confidence 777777888888887764
No 63
>3lom_A Geranyltranstransferase; geranyltransferase, structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Legionella pneumophila subsp}
Probab=66.07 E-value=32 Score=31.70 Aligned_cols=72 Identities=17% Similarity=0.149 Sum_probs=54.8
Q ss_pred HHhcCCCHHHHHHHHHHHHHHHHHHhHHhhH--hhhhcCCCCCchHHhhcCchHHHHhHHHHHHHHHHHHHHHHHHHHhh
Q 019903 228 GFLAGADDDEIQSLRRYGRAVGVLYQVVDDI--LEAKAQTPRDEEKKKKKGKSYVAFYGVEKAMEVAEELRAKAKEELDR 305 (334)
Q Consensus 228 a~lag~~~~~~~~l~~~G~~lG~afQi~DD~--lD~~~~~~~~~~Dl~~~k~t~~~~~gle~a~~~a~~~~~~A~~~L~~ 305 (334)
+.+.|.+.+....+...-+.+=.+.-|.||+ .| ++++++|++|+-..+|...|--..+-+...|.+.|..
T Consensus 62 ~~~~g~~~~~~~~~A~aiEliH~aSLIHDDip~mD--------~~~~RRG~pt~h~~~G~~~AIlaGD~Ll~~a~~~l~~ 133 (313)
T 3lom_A 62 GDLIDVDQGVLDIIAAALELTHCYSLIHDDLPAMD--------NDDLRRGKPSCHKAFDEATAILVGDGMQALAIEVLLM 133 (313)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHHHHHHHHHHSTTTT--------CCSEETTEECHHHHSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHHHHhCCccccc--------CCCccCCCCCchhhcChHHHHHHHHHHHHHHHHHHHH
Confidence 3444566666666777778888889999998 55 4678899999988888777777777777888888877
Q ss_pred cc
Q 019903 306 FK 307 (334)
Q Consensus 306 lp 307 (334)
..
T Consensus 134 ~~ 135 (313)
T 3lom_A 134 RL 135 (313)
T ss_dssp HH
T ss_pred hc
Confidence 63
No 64
>2ftz_A Geranyltranstransferase; TM0161, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MLY; 1.90A {Thermotoga maritima}
Probab=65.61 E-value=19 Score=32.74 Aligned_cols=68 Identities=13% Similarity=0.193 Sum_probs=53.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhHHhhH--hhhhcCCCCCchHHhhcCchHHHHhHHHHHHHHHHHHHHHHHHHHhhcc
Q 019903 232 GADDDEIQSLRRYGRAVGVLYQVVDDI--LEAKAQTPRDEEKKKKKGKSYVAFYGVEKAMEVAEELRAKAKEELDRFK 307 (334)
Q Consensus 232 g~~~~~~~~l~~~G~~lG~afQi~DD~--lD~~~~~~~~~~Dl~~~k~t~~~~~gle~a~~~a~~~~~~A~~~L~~lp 307 (334)
|.+++....+...-+.+=.+.-|.||+ .| ++++++|++|+-..+|...|--..+-+...|.+.|...+
T Consensus 62 g~~~~~~~~~A~avEliH~asLIHDDIP~~D--------~s~~RRG~pt~h~~~G~~~AIl~GD~Ll~~a~~~l~~~~ 131 (284)
T 2ftz_A 62 GVEEEXLLDVAVAVELFHTASLIHDDLPPID--------NADFRRGXPSCHRTYGEDIALLAGDGLFFLAFSQISXIG 131 (284)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHHHHHSTTTT--------CCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHhCCchhcC--------CCCCCCCCccHHhhcCHHHHHHHHHHHHHHHHHHHHhCC
Confidence 445554455666677777888999999 77 467789999999999888888888888888988888763
No 65
>3lsn_A Geranyltranstransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; HET: MSE; 1.35A {Pseudomonas fluorescens} PDB: 3lji_A* 3p41_A*
Probab=64.97 E-value=26 Score=32.17 Aligned_cols=71 Identities=11% Similarity=0.088 Sum_probs=54.8
Q ss_pred HhcCCCHHHHHHHHHHHHHHHHHHhHHhhH--hhhhcCCCCCchHHhhcCchHHHHhHHHHHHHHHHHHHHHHHHHHhhc
Q 019903 229 FLAGADDDEIQSLRRYGRAVGVLYQVVDDI--LEAKAQTPRDEEKKKKKGKSYVAFYGVEKAMEVAEELRAKAKEELDRF 306 (334)
Q Consensus 229 ~lag~~~~~~~~l~~~G~~lG~afQi~DD~--lD~~~~~~~~~~Dl~~~k~t~~~~~gle~a~~~a~~~~~~A~~~L~~l 306 (334)
.+.|.+.+....+...-+.+=.+.-|.||+ .| ++++++|++|+-..+|...|--..+-+...|.+.|...
T Consensus 57 ~~~g~~~~~~~~~A~aiEliH~asLIHDDip~mD--------~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~a~~~l~~~ 128 (304)
T 3lsn_A 57 EALGGKPEQANGAACAVELIHAYSLVHDDLPAMD--------DDDLRRGQPTTHKAFDEACAILAGDGLQSLAFSALLDP 128 (304)
T ss_dssp HHTTCCGGGGHHHHHHHHHHHHHHHHHHTSTTTT--------CCSEETTEECHHHHSCHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHHHHHCCccccc--------CCCccCCCCchHhhcCHHHHHHHHHHHHHHHHHHHHHh
Confidence 334555555556666777788889999998 55 46789999999999988878777888888999998876
Q ss_pred c
Q 019903 307 K 307 (334)
Q Consensus 307 p 307 (334)
+
T Consensus 129 ~ 129 (304)
T 3lsn_A 129 A 129 (304)
T ss_dssp T
T ss_pred c
Confidence 4
No 66
>3bny_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid, farnesyl diphosphate, magnesium, cyclization, lyase; HET: FPF; 1.89A {Aspergillus terreus} PDB: 2e4o_A 2oa6_A* 3bnx_A* 3cke_A*
Probab=64.90 E-value=79 Score=28.37 Aligned_cols=61 Identities=15% Similarity=0.051 Sum_probs=41.4
Q ss_pred ChhHHHHHHHhhHHHHHHHH-HHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHhhHhhhhcCC
Q 019903 204 EPNLVEFVQEKKFGEMSECS-AVCGGFLAGADDDEIQSLRRYGRAVGVLYQVVDDILEAKAQT 265 (334)
Q Consensus 204 ~~~~y~~i~~~KTa~Lf~~a-~~lGa~lag~~~~~~~~l~~~G~~lG~afQi~DD~lD~~~~~ 265 (334)
+.++|..+-..-+|..+.+. +..+. =-..+++..+...++-...+...-+.||+..|....
T Consensus 167 s~eeYl~~r~~s~g~~~~~~~~~~~~-g~~l~~e~~~~~~~l~~~~~~~~~L~NDl~S~~kE~ 228 (320)
T 3bny_A 167 GLGGYLEYRERDVGKELLAALMRFSM-GLKLSPSELQRVREIDANCSKHLSVVNDIYSYEKEL 228 (320)
T ss_dssp CHHHHHHHHHTCHHHHHHHHHHHHHH-TCCCCHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHhhhcccHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHHHHHHHHhcccchhHHHH
Confidence 67888887665566543222 22221 112467777788889999999999999999987544
No 67
>3m0g_A Farnesyl diphosphate synthase; structural genomics, protein structure initiative, NYSGXRC, biosynthesis, transferase, PSI-2; 1.90A {Rhodobacter capsulatus} PDB: 3lvs_A
Probab=64.70 E-value=36 Score=31.13 Aligned_cols=72 Identities=13% Similarity=0.054 Sum_probs=56.4
Q ss_pred HHhcCCCHHHHHHHHHHHHHHHHHHhHHhhH--hhhhcCCCCCchHHhhcCchHHHHhHHHHHHHHHHHHHHHHHHHHhh
Q 019903 228 GFLAGADDDEIQSLRRYGRAVGVLYQVVDDI--LEAKAQTPRDEEKKKKKGKSYVAFYGVEKAMEVAEELRAKAKEELDR 305 (334)
Q Consensus 228 a~lag~~~~~~~~l~~~G~~lG~afQi~DD~--lD~~~~~~~~~~Dl~~~k~t~~~~~gle~a~~~a~~~~~~A~~~L~~ 305 (334)
+.+.|.+.+....+...-+.+=.+.-|.||+ .| ++++++|++|+-..+|...|--..+-+...|.+.|..
T Consensus 53 ~~~~g~~~~~~~~~A~avEliH~asLIHDDip~mD--------~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~a~~~l~~ 124 (297)
T 3m0g_A 53 AAIHGISMAQAMPAALAVEALHAYSLVHDDMPCMD--------NDDLRRGLPTVHKKWDDATAVLAGDALQTLAFELCTD 124 (297)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHHHHHHHHHTSTTTT--------CCSEETTEECHHHHSCHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHHHHhcCccccC--------CCCccCCCCCchhhcChHHHHHHHHHHHHHHHHHHHH
Confidence 3444566666666777777888899999998 55 4678899999999998888877788888889988887
Q ss_pred cc
Q 019903 306 FK 307 (334)
Q Consensus 306 lp 307 (334)
..
T Consensus 125 ~~ 126 (297)
T 3m0g_A 125 PV 126 (297)
T ss_dssp GG
T ss_pred hc
Confidence 64
No 68
>3uca_A Geranyltranstransferase; isoprenoid synthesis, isoprenoid diphosphate synthase; 2.00A {Clostridium perfringens}
Probab=64.65 E-value=12 Score=34.78 Aligned_cols=73 Identities=12% Similarity=0.028 Sum_probs=48.0
Q ss_pred HHHHhCCCchhhHHHHHHHHHHHHHHHHHhCCCCCC------------CCCCCCCCCCCCCcCChHHHHHHHHHHHHHHH
Q 019903 93 ACELFGVNRIAAFPTACALEMVHAASLIHDDLPCMD------------DDPSRRGQPSNHTVYGVDIAILAGDALFPLGF 160 (334)
Q Consensus 93 ~~~~~g~~~~~~~~lA~avEliH~asLIhDDIp~iD------------~s~~RRG~pt~h~~~G~~~Avl~GD~L~~~a~ 160 (334)
++.+.|.+++....+..--+.|=.|+-|.||+ +| +++.+.|++|+-..+|...|--...-+...|.
T Consensus 222 Ga~laga~~~~~~~l~~~g~~lGlAFQI~DDi--LD~~gd~~~~GK~~g~Dl~egK~T~p~l~al~~a~~~a~~~~~~A~ 299 (324)
T 3uca_A 222 GAVLAEASEGDIKKLEGFGYKLGLAFQIKDDI--LDVVGNAKDLGKNVHKDQESNKNNYITIFGLEECKKKCVNITEECI 299 (324)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHH--HHHCCC-----------------CHHHHHCHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHH--HhccCCHHHhCCCcchHhhcCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334545555556666677888899999999 65 35678888888888898888888888888888
Q ss_pred HHHHhcC
Q 019903 161 QHIVSHT 167 (334)
Q Consensus 161 ~~l~~~~ 167 (334)
+.|....
T Consensus 300 ~~L~~l~ 306 (324)
T 3uca_A 300 EILSSIK 306 (324)
T ss_dssp HHHHTSS
T ss_pred HHHHhCC
Confidence 8887653
No 69
>4dhd_A Polyprenyl synthetase; isoprenoid synthesis, isoprenoid diphosphate synthase, trans; 1.65A {Pyrobaculum calidifontis} PDB: 4gp1_A* 4gp2_A*
Probab=64.00 E-value=14 Score=34.79 Aligned_cols=63 Identities=13% Similarity=0.057 Sum_probs=48.8
Q ss_pred CHHHHHHHHHHHHHHHHHHhHHhhHhhhhcCCCCCchHHhhcCchHHHHhHHHHHHHHHHHHHHHHHHHHh
Q 019903 234 DDDEIQSLRRYGRAVGVLYQVVDDILEAKAQTPRDEEKKKKKGKSYVAFYGVEKAMEVAEELRAKAKEELD 304 (334)
Q Consensus 234 ~~~~~~~l~~~G~~lG~afQi~DD~lD~~~~~~~~~~Dl~~~k~t~~~~~gle~a~~~a~~~~~~A~~~L~ 304 (334)
+.+....+...-+.+=.++-|.||+.| ++++++|++|+-..+|...|--..+-+...|.+.|.
T Consensus 63 ~~~~~~~~A~aiEliH~asLiHDDI~D--------~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~ 125 (358)
T 4dhd_A 63 QWRPALPAAAIVELIHNYSLIYDDIID--------RGDVRRGLPTVRKAFGDNAAILVGIWYREAIEEAVL 125 (358)
T ss_dssp CCGGGHHHHHHHHHHHHHHHHHHHHHT--------TCCEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHCcccc--------CCCCcCCCccHHHhcCHHHHHHHHHHHHHHHHHHHh
Confidence 333344566667788889999999976 356788999999888888787777778888888873
No 70
>2azj_A Geranylgeranyl pyrophosphate synthetase; hexpps, trans-prenyltransferase; 2.40A {Sulfolobus solfataricus} PDB: 2azk_A
Probab=63.12 E-value=19 Score=32.79 Aligned_cols=69 Identities=14% Similarity=0.127 Sum_probs=50.9
Q ss_pred hcCCCHHHHHHHHHHHHHHHHHHhHHhhHhhhhcCCCCCchHHhhcCchHHHHhHHHHHHHHHHHHHHHHHHHH-hhc
Q 019903 230 LAGADDDEIQSLRRYGRAVGVLYQVVDDILEAKAQTPRDEEKKKKKGKSYVAFYGVEKAMEVAEELRAKAKEEL-DRF 306 (334)
Q Consensus 230 lag~~~~~~~~l~~~G~~lG~afQi~DD~lD~~~~~~~~~~Dl~~~k~t~~~~~gle~a~~~a~~~~~~A~~~L-~~l 306 (334)
..|.+++....+...-+.+=.+.=|.||+.| ++++++|++|+-..+|...|--..+-+...|.+.| ..+
T Consensus 63 ~~g~~~~~~~~~A~avEliH~asLIHDDi~D--------~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~a~~~l~~~~ 132 (289)
T 2azj_A 63 ALGGDIKDSYGGALAIEILHSASLALCDIVD--------LDATRRGDKAAWVVYGNRKVIFITNYLIPTALRIIQTSY 132 (289)
T ss_dssp HTTCCGGGGHHHHHHHHHHHHHHHHHHHHHT--------TCCBSSSSBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHHHHHHHHhCCCCC--------CCCCCCCCccHHHhcChHHHHHHHHHHHHHHHHHHHhcC
Confidence 3344444444566666777788889999976 35678899999888888777777777788888888 665
No 71
>2j1p_A Geranylgeranyl pyrophosphate synthetase; transferase, isoprene biosynthesis, multifunctional enzyme, carotenoid biosynthesis; HET: GRG; 1.8A {Sinapis alba} PDB: 2j1o_A 3kra_A 3krc_A* 3krf_A* 3kro_A* 3krp_A* 3oab_A* 3oac_A*
Probab=62.99 E-value=49 Score=30.04 Aligned_cols=69 Identities=14% Similarity=0.211 Sum_probs=50.1
Q ss_pred cCCCHHHHHHHHHHHHHHHHHHhHHhhH--hhhhcCCCCCchHHhhcCchHHHHhHHHHHHHHHHHHHHHHHHHHhhcc
Q 019903 231 AGADDDEIQSLRRYGRAVGVLYQVVDDI--LEAKAQTPRDEEKKKKKGKSYVAFYGVEKAMEVAEELRAKAKEELDRFK 307 (334)
Q Consensus 231 ag~~~~~~~~l~~~G~~lG~afQi~DD~--lD~~~~~~~~~~Dl~~~k~t~~~~~gle~a~~~a~~~~~~A~~~L~~lp 307 (334)
.|.+++.+..+...-+.+=.+.-|.||+ .| ++++++|++|+-..+|...|--..+-+...|.+.+....
T Consensus 67 ~g~~~~~~~~~A~avEliH~asLiHDDip~mD--------~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~A~~~l~~~~ 137 (293)
T 2j1p_A 67 VGGEESLAMPAACAVEMIHTMSLIHDDLPCMD--------NDDLRRGKPTNHKVYGEDVAVLAGDALLSFAFEHLASAT 137 (293)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHHHHHTSTTTT--------CCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred hCCCHHHHHHHHHHHHHHHHHHHHHCCchhcc--------CCCCCCCCCchhhhcCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3455554445556666677788899997 55 467889999998888877777677777778888877653
No 72
>1rqj_A Geranyltranstransferase; bisphosphonate, isoprenyl synthase; HET: IPR RIS; 1.95A {Escherichia coli} SCOP: a.128.1.1 PDB: 1rqi_A* 2for_A*
Probab=61.80 E-value=54 Score=29.83 Aligned_cols=70 Identities=11% Similarity=0.197 Sum_probs=52.5
Q ss_pred HhcCCCHHHHHHHHHHHHHHHHHHhHHhhH--hhhhcCCCCCchHHhhcCchHHHHhHHHHHHHHHHHHHHHHHHHHhhc
Q 019903 229 FLAGADDDEIQSLRRYGRAVGVLYQVVDDI--LEAKAQTPRDEEKKKKKGKSYVAFYGVEKAMEVAEELRAKAKEELDRF 306 (334)
Q Consensus 229 ~lag~~~~~~~~l~~~G~~lG~afQi~DD~--lD~~~~~~~~~~Dl~~~k~t~~~~~gle~a~~~a~~~~~~A~~~L~~l 306 (334)
.+.|.+.+....+...-+.+=.+.=|.||+ .| ++++++|++|+-..+|...|--..+-+...|.+.|..+
T Consensus 57 ~~~g~~~~~~~~~A~avEliH~asLiHDDiP~~D--------~s~~RRG~pt~h~~~G~~~Ail~GD~L~~~a~~~l~~~ 128 (299)
T 1rqj_A 57 HMFGVSTNTLDAPAAAVECIHAYSLIHDDLPAMD--------DDDLRRGLPTCHVKFGEANAILAGDALQTLAFSILSDA 128 (299)
T ss_dssp HHTTCCHHHHHHHHHHHHHHHHHHHHHHTSTTTT--------CCCEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHhCCCHHHHHHHHHHHHHHHHhHHHhCCChhhc--------CCCCCCCCCChhhhcChHHHHHHHHHHHHHHHHHHHHh
Confidence 334556555455666667777788899999 77 46678999999988888777777777788888888775
No 73
>2h8o_A Geranyltranstransferase; geranyltransferase,agrobacterium tumefaciens, structural GEN PSI-2, protein structure initiative; 1.60A {Agrobacterium tumefaciens}
Probab=61.05 E-value=51 Score=30.68 Aligned_cols=70 Identities=13% Similarity=0.126 Sum_probs=52.8
Q ss_pred HhcCCCHHHHHHHHHHHHHHHHHHhHHhhH--hhhhcCCCCCchHHhhcCchHHHHhHHHHHHHHHHHHHHHHHHHHhhc
Q 019903 229 FLAGADDDEIQSLRRYGRAVGVLYQVVDDI--LEAKAQTPRDEEKKKKKGKSYVAFYGVEKAMEVAEELRAKAKEELDRF 306 (334)
Q Consensus 229 ~lag~~~~~~~~l~~~G~~lG~afQi~DD~--lD~~~~~~~~~~Dl~~~k~t~~~~~gle~a~~~a~~~~~~A~~~L~~l 306 (334)
.+.|.+++.+..+...-+.+=.+.-|.||+ .| ++++++|++|+-..+|...|--..+-+...|.+.|...
T Consensus 98 ~~~g~~~~~~~~~A~aiEliH~asLIHDDiPamD--------~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~A~~~l~~~ 169 (335)
T 2h8o_A 98 ALLGGDAEAGLHVGAALECLHCYSLVHDDLPAMD--------DDDLRRGQPTVHRKFDEATAILAGDSLLTLAFDIIASD 169 (335)
T ss_dssp HHTTCCHHHHHHHHHHHHHHHHHHHHHHTSTTTT--------CCSEETTEECHHHHSCHHHHHHHHHHHHHHHHHHHHST
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHHHHHCCchhcc--------CCCcCCCCCcHhhhcChHHHHHHHHHHHHHHHHHHHHh
Confidence 334555554445666667777788899999 76 46788999999998888777777777788888888876
No 74
>3ts7_A Geranyltranstransferase; isoprenoid synthesis, farnesyl diphosphate synthase; 1.94A {Methylococcus capsulatus}
Probab=60.98 E-value=30 Score=32.14 Aligned_cols=69 Identities=16% Similarity=0.176 Sum_probs=53.9
Q ss_pred cCCCHHHHHHHHHHHHHHHHHHhHHhhH--hhhhcCCCCCchHHhhcCchHHHHhHHHHHHHHHHHHHHHHHHHHhhcc
Q 019903 231 AGADDDEIQSLRRYGRAVGVLYQVVDDI--LEAKAQTPRDEEKKKKKGKSYVAFYGVEKAMEVAEELRAKAKEELDRFK 307 (334)
Q Consensus 231 ag~~~~~~~~l~~~G~~lG~afQi~DD~--lD~~~~~~~~~~Dl~~~k~t~~~~~gle~a~~~a~~~~~~A~~~L~~lp 307 (334)
.|.+.+....+...-+.|=.+.-|.||+ .| ++++++|++|+-..+|...|--..+-+...|.+.|...+
T Consensus 65 ~g~~~~~~~~~A~avEliH~aSLIHDDip~mD--------~~~~RRG~pt~h~~~G~~~AIlaGD~L~~~Af~~l~~~~ 135 (324)
T 3ts7_A 65 IGVAADLLDGPACAVEFIHVYSLIHDDLPAMD--------DDDLRRGKPTCHKAYDEATAILAGDGLQALAFHVLAQDP 135 (324)
T ss_dssp HTCCGGGTHHHHHHHHHHHHHHHHHHTSTTTT--------CCSEETTEECHHHHSCHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred hCCCHHHHHHHHHHHHHHHHHHHhhcCccccc--------CCCccCCCCchhhhcChHHHHHHHHHHHHHHHHHHHhcc
Confidence 3445555556666777788889999998 55 467889999999999888787788888889999888764
No 75
>3pde_A Farnesyl-diphosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative; HET: IPE; 1.75A {Lactobacillus brevis} PDB: 3m9u_A*
Probab=59.42 E-value=36 Score=31.36 Aligned_cols=61 Identities=11% Similarity=0.046 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHHhHHhhH--hhhhcCCCCCchHHhhcCchHHHHhHHHHHHHHHHHHHHHHHHHHhhcc
Q 019903 239 QSLRRYGRAVGVLYQVVDDI--LEAKAQTPRDEEKKKKKGKSYVAFYGVEKAMEVAEELRAKAKEELDRFK 307 (334)
Q Consensus 239 ~~l~~~G~~lG~afQi~DD~--lD~~~~~~~~~~Dl~~~k~t~~~~~gle~a~~~a~~~~~~A~~~L~~lp 307 (334)
..+...-+.+=.+.-|.||+ .| ++++++|++|+-..+|...|--..+-+...|.+.|...+
T Consensus 73 ~~~A~aiEliH~aSLIHDDiP~mD--------~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~Af~~l~~~~ 135 (309)
T 3pde_A 73 WRPVMALELLHTYSLIHDDLPAMD--------NDALRRGEPTNHVKFGAGMATLAGDGLLTLAFQWLTATD 135 (309)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTTT--------CCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHTSSS
T ss_pred hHHHHHHHHHHHHHHHHCCchhcc--------CCCCCCCCcchhhhcChHHHHHHHHHHHHHHHHHHHhcC
Confidence 45566667777889999999 77 467889999999999988887778888889998888753
No 76
>3oyr_A Trans-isoprenyl diphosphate synthase; isoprenyl synthase, PSI, protein structure initiative; HET: IPE; 2.00A {Caulobacter crescentus}
Probab=58.90 E-value=11 Score=35.52 Aligned_cols=71 Identities=23% Similarity=0.237 Sum_probs=42.4
Q ss_pred HHhcCCCHHHHHHHHHHHHHHHHHHhHHhhHhhhhcCCCCCchHHhhcCchHHHHhHHHHHHHHHHHHHHHHHHHHhhc
Q 019903 228 GFLAGADDDEIQSLRRYGRAVGVLYQVVDDILEAKAQTPRDEEKKKKKGKSYVAFYGVEKAMEVAEELRAKAKEELDRF 306 (334)
Q Consensus 228 a~lag~~~~~~~~l~~~G~~lG~afQi~DD~lD~~~~~~~~~~Dl~~~k~t~~~~~gle~a~~~a~~~~~~A~~~L~~l 306 (334)
+.+.|.+.+....+...-+.+=.+.-|.||+.| ++++++|++|+-..+|...|--..+-+..+|.+.+..+
T Consensus 77 ~~~~g~~~~~~~~~A~aiEliH~asLiHDDi~D--------~s~~RRG~pt~h~~~G~~~AIl~GD~Ll~~a~~~l~~~ 147 (345)
T 3oyr_A 77 ARLAGADNDHFQKLAAAVEFIHTATLLHDDVVD--------GSQLRRGKVAAHLIWGGAQSVLVGDFLFARAFELMVET 147 (345)
T ss_dssp HHHTTCCSSTHHHHHHHHHHHHHHHHHTTTTC-----------------CCCSCCTTHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHHHHHCcccC--------CCCCCCCCccHHHhhCHHHHHHHHHHHHHHHHHHHHhC
Confidence 333444444445666677788889999999966 46778888887766776666666666667777776654
No 77
>3p8l_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.00A {Enterococcus faecalis}
Probab=58.37 E-value=39 Score=30.95 Aligned_cols=62 Identities=11% Similarity=0.136 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHHHHhHHhhH--hhhhcCCCCCchHHhhcCchHHHHhHHHHHHHHHHHHHHHHHHHHhhc
Q 019903 237 EIQSLRRYGRAVGVLYQVVDDI--LEAKAQTPRDEEKKKKKGKSYVAFYGVEKAMEVAEELRAKAKEELDRF 306 (334)
Q Consensus 237 ~~~~l~~~G~~lG~afQi~DD~--lD~~~~~~~~~~Dl~~~k~t~~~~~gle~a~~~a~~~~~~A~~~L~~l 306 (334)
....+...-+.+=.++-|.||+ .| ++++++|++|+-..+|...|--..+-+...|.+.|...
T Consensus 72 ~~~~~A~avEliH~asLIHDDIP~mD--------~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~A~~~l~~~ 135 (302)
T 3p8l_A 72 QDYQVAASLEMIHTYSLIHDDLPAMD--------DDDLRRGKPTNHKVFGEATAILAGDGLLTGAFQLLSLS 135 (302)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSTTTT--------CCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHHCCchhcc--------CCCccCCCcchhhhcChHHHHHHHHHHHHHHHHHHHhc
Confidence 4455666777888899999999 77 46788999999999988877777777888888888774
No 78
>3ipi_A Geranyltranstransferase; isoprene biosynthesis, helical bundle, protein structure initiative II (PSI II), structural genomics, nysgxrc; 1.90A {Methanosarcina mazei}
Probab=56.77 E-value=11 Score=34.51 Aligned_cols=65 Identities=14% Similarity=0.083 Sum_probs=41.0
Q ss_pred CHHHHHHHHHHHHHHHHHHhHHhhHhhhhcCCCCCchHHhhcCchHHHHhHHHHHHHHHHHHHHHHHHHHhhc
Q 019903 234 DDDEIQSLRRYGRAVGVLYQVVDDILEAKAQTPRDEEKKKKKGKSYVAFYGVEKAMEVAEELRAKAKEELDRF 306 (334)
Q Consensus 234 ~~~~~~~l~~~G~~lG~afQi~DD~lD~~~~~~~~~~Dl~~~k~t~~~~~gle~a~~~a~~~~~~A~~~L~~l 306 (334)
+.+....+...-+.+=.+.-|.||+.| ++++++|++|+-..+|...|--..+-+..+|.+.+...
T Consensus 60 ~~~~~~~~A~avEliH~asLIHDDi~D--------~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~a~~ll~~~ 124 (295)
T 3ipi_A 60 SYSRSLNAALAVEMMHSASLIHDDLLD--------QGLVRRNLPSAPEKFGPSGALLCGDYLIAKSIAFISPY 124 (295)
T ss_dssp CCGGGHHHHHHHHHHHHHHHHHHHHHH--------HHTSCTTSCCCCCSSCHHHHHHHHHHHHHHHHHHHGGG
T ss_pred CHHHHHHHHHHHHHHHHHHHHHCcCcC--------CCCCCCCCccHHHhcCccHHHHHHHHHHHHHHHHHHHc
Confidence 333344566667788889999999987 35667777776555555545444455555555555443
No 79
>3llw_A Geranyltranstransferase (ISPA); structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Helicobacter pylori} PDB: 3q1o_A*
Probab=53.13 E-value=21 Score=32.91 Aligned_cols=62 Identities=15% Similarity=0.171 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHHHHHhHHhhH--hhhhcCCCCCchHHhhcCchHHHHhHHHHHHHHHHHHHHHHHHHHhh
Q 019903 236 DEIQSLRRYGRAVGVLYQVVDDI--LEAKAQTPRDEEKKKKKGKSYVAFYGVEKAMEVAEELRAKAKEELDR 305 (334)
Q Consensus 236 ~~~~~l~~~G~~lG~afQi~DD~--lD~~~~~~~~~~Dl~~~k~t~~~~~gle~a~~~a~~~~~~A~~~L~~ 305 (334)
+....+...-+.+=.++-|.||+ .| ++++++|++|+-..+|...|--..+-+...|.+.|..
T Consensus 74 ~~~~~~A~aiEliH~aSLIHDDIp~mD--------~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~Af~~l~~ 137 (311)
T 3llw_A 74 TEYFKIALSIECLHTYSLIHDDLPCMD--------NAALRRNHPTLHAKYDETTAVLIGDALNTYSFELLSN 137 (311)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSTTTT--------CCSEETTEECHHHHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCccccC--------CCcccCCCCchhhhcCHHHHHHHHHHHHHHHHHHHHh
Confidence 34445555566677788999998 66 4678899999988888777766677777788888776
No 80
>3kra_B Geranyl diphosphate synthase small subunit; prenyltransferase, isoprene biosynthesis, isoprenyl pyrophosphate synthase, transferase; 1.90A {Mentha x piperita} PDB: 3krc_B* 3krf_B* 3kro_B* 3krp_B* 3oab_B* 3oac_B*
Probab=52.91 E-value=22 Score=32.11 Aligned_cols=72 Identities=13% Similarity=0.047 Sum_probs=52.1
Q ss_pred HhcCCCHHHHHHHHHHHHHHHHHHhHHhhHh-hhhcCCCCCchHHhhcCchHHHHhHHHHHHHHHHHHHHHHHHHHhhcc
Q 019903 229 FLAGADDDEIQSLRRYGRAVGVLYQVVDDIL-EAKAQTPRDEEKKKKKGKSYVAFYGVEKAMEVAEELRAKAKEELDRFK 307 (334)
Q Consensus 229 ~lag~~~~~~~~l~~~G~~lG~afQi~DD~l-D~~~~~~~~~~Dl~~~k~t~~~~~gle~a~~~a~~~~~~A~~~L~~lp 307 (334)
.+.|.+.+....+...-+.+=.+.-|.||+. | ++|.++|++|+-..+|...|--..+-+...|.+.|...+
T Consensus 53 ~~~g~~~~~~~~~A~aiEliH~aSLIHDDI~~d--------D~d~RRG~pt~h~~~G~~~AIlaGD~Ll~~Af~~l~~~~ 124 (274)
T 3kra_B 53 ELVGGDRSQAMAAAAAIHLVHAAAYVHEHLPLT--------DGSRPVSKPAIQHKYGPNVELLTGDGIVPFGFELLAGSV 124 (274)
T ss_dssp HHTTCCGGGGHHHHHHHHHHHHHHHHHHTCCCS--------SSSSCCCSSCCCCSSCHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHHHHHcCCccc--------CCccCCCCCCchhhcChHHHHHHHHHHHHHHHHHHHhcC
Confidence 3345565555566667788888999999996 2 234578888888778877777777777888888888765
Q ss_pred C
Q 019903 308 K 308 (334)
Q Consensus 308 ~ 308 (334)
.
T Consensus 125 ~ 125 (274)
T 3kra_B 125 D 125 (274)
T ss_dssp C
T ss_pred C
Confidence 3
No 81
>2q58_A Fragment, farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, structural genomics, structur genomics consortium, SGC; HET: ZOL; 2.37A {Cryptosporidium parvum} PDB: 2o1o_A*
Probab=52.82 E-value=38 Score=31.91 Aligned_cols=55 Identities=16% Similarity=0.181 Sum_probs=40.5
Q ss_pred HHHHHHHHHhHHhhHhhhhcCCCCCchHHhhcCchHHHHhHHHHHHHHHHHHHHHHHHHHhhc
Q 019903 244 YGRAVGVLYQVVDDILEAKAQTPRDEEKKKKKGKSYVAFYGVEKAMEVAEELRAKAKEELDRF 306 (334)
Q Consensus 244 ~G~~lG~afQi~DD~lD~~~~~~~~~~Dl~~~k~t~~~~~gle~a~~~a~~~~~~A~~~L~~l 306 (334)
.-+-+=.++=|.||+.| ++++++|++|+-..+|...|--..+-+...|.+.+..+
T Consensus 103 aiEliH~asLiHDDimD--------~s~~RRG~pt~h~~~G~~~AIl~Gd~L~~~a~~~l~~~ 157 (368)
T 2q58_A 103 VVEAIQALILIADDIMD--------SGKFRRGAPCWYIVHGQSNAINDIFFLKMLSLSLIFEL 157 (368)
T ss_dssp HHHHHHHHHHHHHHHHT--------TCCEETTEECHHHHTHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHhhccc--------CCCCCCCCCccccCcchhhHHHHHHHHHHHHHHHHHHh
Confidence 34556667888999976 46789999999888887766666666666777766554
No 82
>3p8r_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.50A {Vibrio cholerae} SCOP: a.128.1.1
Probab=52.79 E-value=24 Score=32.33 Aligned_cols=73 Identities=11% Similarity=0.181 Sum_probs=41.9
Q ss_pred HHHhcCCCHHHHHHHHHHHHHHHHHHhHHhhH--hhhhcCCCCCchHHhhcCchHHHHhHHHHHHHHHHHHHHHHHHHHh
Q 019903 227 GGFLAGADDDEIQSLRRYGRAVGVLYQVVDDI--LEAKAQTPRDEEKKKKKGKSYVAFYGVEKAMEVAEELRAKAKEELD 304 (334)
Q Consensus 227 Ga~lag~~~~~~~~l~~~G~~lG~afQi~DD~--lD~~~~~~~~~~Dl~~~k~t~~~~~gle~a~~~a~~~~~~A~~~L~ 304 (334)
.+.+.|.+.+....+...-+.+=.++-|.||+ .| ++++++|++|+-..+|...|--..+-+...|.+.|.
T Consensus 61 ~~~~~g~~~~~~~~~A~aiEliH~asLIHDDIp~mD--------~s~~RRG~pt~h~~~G~~~AIlaGD~L~~~a~~~l~ 132 (302)
T 3p8r_A 61 TGQMLGCELSDLDTPASAVECIHAYSLIHDDLPAMD--------DDELRRGKPTCHIQFDEATAILTGDALQTLAFTILA 132 (302)
T ss_dssp HHHTTTCCGGGTHHHHHHHHHHHHHHHHHHTCHHHH--------CCC--------------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHHHHHCCccccc--------CCCcCCCCcchhhhcCHHHHHHHHHHHHHHHHHHHH
Confidence 33444556555556666777888899999998 66 356788999988888877777777777788888887
Q ss_pred hcc
Q 019903 305 RFK 307 (334)
Q Consensus 305 ~lp 307 (334)
..+
T Consensus 133 ~~~ 135 (302)
T 3p8r_A 133 EGD 135 (302)
T ss_dssp HSC
T ss_pred hcc
Confidence 763
No 83
>3npk_A Geranyltranstransferase; isoprene biosynthesis, SGX, structural genomics protein structure initiative; 1.50A {Campylobacter jejuni}
Probab=48.60 E-value=88 Score=28.38 Aligned_cols=64 Identities=13% Similarity=0.091 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHHHHHHhHHhhH--hhhhcCCCCCchHHhhcCchHHHHhHHHHHHHHHHHHHHHHHHHHhhc
Q 019903 235 DDEIQSLRRYGRAVGVLYQVVDDI--LEAKAQTPRDEEKKKKKGKSYVAFYGVEKAMEVAEELRAKAKEELDRF 306 (334)
Q Consensus 235 ~~~~~~l~~~G~~lG~afQi~DD~--lD~~~~~~~~~~Dl~~~k~t~~~~~gle~a~~~a~~~~~~A~~~L~~l 306 (334)
.+....+...-+.+=.++-|.||+ .| ++++++|++|+-..+|...|--..+-+...|.+.|...
T Consensus 59 ~~~~~~~A~aiEliH~aSLIHDDIp~mD--------~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~A~~~l~~~ 124 (291)
T 3npk_A 59 LNQALDVALALEFIHTYSLIHDDLPAMD--------NADFRRGIPTLHKSYDETTAILVGDALNTEAFLVLSHA 124 (291)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSTTTT--------CCSEETTEECHHHHTCHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCccccc--------CCCCCCCCCchhhhcCHHHHHHHHHHHHHHHHHHHHhc
Confidence 344455666677788889999999 55 46788999999988888777777777788888888664
No 84
>3lk5_A Geranylgeranyl pyrophosphate synthase; structural genomics, protein structure initiative, geranylge pyrophosphate synthase; 1.90A {Corynebacterium glutamicum} PDB: 3qqv_A*
Probab=44.66 E-value=76 Score=29.97 Aligned_cols=64 Identities=11% Similarity=0.121 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHhHHhhHhhhhcCCCCCchHHhhcCchHHHH----------------hHHHHHHHHHHHHHHH
Q 019903 235 DDEIQSLRRYGRAVGVLYQVVDDILEAKAQTPRDEEKKKKKGKSYVAF----------------YGVEKAMEVAEELRAK 298 (334)
Q Consensus 235 ~~~~~~l~~~G~~lG~afQi~DD~lD~~~~~~~~~~Dl~~~k~t~~~~----------------~gle~a~~~a~~~~~~ 298 (334)
.+.+-.+...-+.|=.+.=|.||+.| ++++++|++|+-.. +|...|--..+-....
T Consensus 87 ~~~~~~~AaaiEliH~asLIHDDImD--------~s~~RRG~pt~h~~f~~~~~~~~~~~~~~~~G~~~AIL~GD~Ll~~ 158 (380)
T 3lk5_A 87 LESVLDAAASLEFIQACALIHDDIID--------SSDTRRGAPTVHRAVEADHRANNFEGDPEHFGVSVSILAGDMALVW 158 (380)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT--------C-----------------------------CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCcC--------CCCCCCCCcchhHHHHHhhhhcccccchhhcCHHHHHHHHHHHHHH
Confidence 44455566666777788899999977 46778888888765 3666666666666777
Q ss_pred HHHHHhhc
Q 019903 299 AKEELDRF 306 (334)
Q Consensus 299 A~~~L~~l 306 (334)
|.+.+...
T Consensus 159 A~~~l~~~ 166 (380)
T 3lk5_A 159 AEDMLQDS 166 (380)
T ss_dssp HHHHHHTS
T ss_pred HHHHHHHc
Confidence 77777764
No 85
>3apz_A Geranyl diphosphate synthase; prenyltransferase, all alpha-helices fold, chroloplast, TRAN isoprenoid biosynthetic process; 2.60A {Arabidopsis thaliana} PDB: 3aq0_A*
Probab=43.02 E-value=67 Score=29.79 Aligned_cols=59 Identities=17% Similarity=0.224 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHhHHhhHhhhhcCCCCCchHHhhcCchHHHHhHHHHHHHHHHHHHHHHHHHHhhcc
Q 019903 241 LRRYGRAVGVLYQVVDDILEAKAQTPRDEEKKKKKGKSYVAFYGVEKAMEVAEELRAKAKEELDRFK 307 (334)
Q Consensus 241 l~~~G~~lG~afQi~DD~lD~~~~~~~~~~Dl~~~k~t~~~~~gle~a~~~a~~~~~~A~~~L~~lp 307 (334)
+...-+.+=.++-|.||+.| ++++++|++|+-..+|...|--..+-+...|.+.|..++
T Consensus 92 ~A~avEliH~asLiHDDi~D--------~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~ 150 (348)
T 3apz_A 92 IAEITEMIHVASLLHDDVLD--------DADTRRGVGSLNVVMGNKMSVLAGDFLLSRACGALAALK 150 (348)
T ss_dssp HHHHHHHHHHHHHHHHHC------------------------CCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhccccC--------CCCCCCCCCcHHHHhCchHHHHHHHHHHHHHHHHHHhCC
Confidence 44445566667789999976 467888999988888877777777777777777777653
No 86
>3kb9_A EPI-isozizaene synthase; terpenoid cyclase, alpha-helical fold, farnesyl diphosphate, metal-binding, lyase, magnesium; HET: BTM; 1.60A {Streptomyces coelicolor} PDB: 3kbk_A 3lgk_A 3lg5_A*
Probab=42.43 E-value=2.1e+02 Score=26.52 Aligned_cols=59 Identities=8% Similarity=-0.095 Sum_probs=34.8
Q ss_pred ChhHHHHHHHhhHHHHHHHH-HHHHHHhcCCCHHHHH--HHHHHHHHHHHHHhHHhhHhhhhc
Q 019903 204 EPNLVEFVQEKKFGEMSECS-AVCGGFLAGADDDEIQ--SLRRYGRAVGVLYQVVDDILEAKA 263 (334)
Q Consensus 204 ~~~~y~~i~~~KTa~Lf~~a-~~lGa~lag~~~~~~~--~l~~~G~~lG~afQi~DD~lD~~~ 263 (334)
+.++|..+-..-+|..+.+. +..+.- -..++++.+ .+.++-...+...-+.||+..|..
T Consensus 207 s~eEYl~~r~~s~g~~~~~~l~~~~~g-~~l~~~~~~~p~~~~l~~~~~~i~rL~NDi~S~~k 268 (382)
T 3kb9_A 207 GVEEYLELRRLTFAHWIWTDLLEPSSG-CELPDAVRKHPAYRRAALLSQEFAAWYNDLCSLPK 268 (382)
T ss_dssp CHHHHHHHHHHHTTHHHHHHHHHHHHT-CCCCHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHhhhcCHHHHHHHHHHHcC-CCCCHHHHhChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77888877443344332221 222211 123444432 466778888899999999999864
No 87
>1di1_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid biosynthesis, lyase; 2.50A {Penicillium roqueforti} SCOP: a.128.1.4 PDB: 1dgp_A
Probab=39.57 E-value=2e+02 Score=25.28 Aligned_cols=99 Identities=16% Similarity=0.078 Sum_probs=56.0
Q ss_pred ChhHHHHHHHhhHHHHHHHH-HHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHhhHhhhhcCCCCCchHHh-hc--CchH
Q 019903 204 EPNLVEFVQEKKFGEMSECS-AVCGGFLAGADDDEIQSLRRYGRAVGVLYQVVDDILEAKAQTPRDEEKKK-KK--GKSY 279 (334)
Q Consensus 204 ~~~~y~~i~~~KTa~Lf~~a-~~lGa~lag~~~~~~~~l~~~G~~lG~afQi~DD~lD~~~~~~~~~~Dl~-~~--k~t~ 279 (334)
+.++|..+-..-+|..+.+. +..|. =-..+++..+.+.++-...+...-+.||+..|....+. |.+.. .+ ..+.
T Consensus 153 s~eeYl~~r~~s~g~~~~~~~~~~~~-g~~l~~e~~~~~~~l~~~~~~~~~l~NDl~S~~kE~~~-g~~~h~~~~~~~n~ 230 (300)
T 1di1_A 153 ELGHYLEYREKDVGKALLSALMRFSM-GLRLSADELQDMKALEANCAKQLSVVNDIYSYDKEEEA-SRTGHKEGAFLCSA 230 (300)
T ss_dssp SHHHHHHHHHTCHHHHHHHHHHHHHH-TCCCCHHHHHTTHHHHHHHHHHHHHHHHHHHTTTTCCC-----------CCCH
T ss_pred CHHHHHHHHhhhccHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHh-hccccccccccchh
Confidence 67888887555555443222 22221 12246777778888999999999999999998755432 11110 00 1122
Q ss_pred HHH----h--HHHHHHHHHHHHHHHHHHHHh
Q 019903 280 VAF----Y--GVEKAMEVAEELRAKAKEELD 304 (334)
Q Consensus 280 ~~~----~--gle~a~~~a~~~~~~A~~~L~ 304 (334)
+.. + ..|.|.+.+.+.++++.+.+.
T Consensus 231 V~~~m~~~g~s~eeA~~~~~~~i~~~~~~~~ 261 (300)
T 1di1_A 231 VKVLAEESKLGIPATKRVLWSMTREWETVHD 261 (300)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 222 2 356666666666666554443
No 88
>3qkc_B Geranyl diphosphate synthase small subunit; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.20A {Antirrhinum majus}
Probab=38.86 E-value=64 Score=28.97 Aligned_cols=71 Identities=8% Similarity=0.003 Sum_probs=48.2
Q ss_pred HHhcCCCHHHHHHHHHHHHHHHHHHhHHhhHhhhhcCCCCCchHHhhcCchHHHHhHHHHHHHHHHHHHHHHHHHHhhcc
Q 019903 228 GFLAGADDDEIQSLRRYGRAVGVLYQVVDDILEAKAQTPRDEEKKKKKGKSYVAFYGVEKAMEVAEELRAKAKEELDRFK 307 (334)
Q Consensus 228 a~lag~~~~~~~~l~~~G~~lG~afQi~DD~lD~~~~~~~~~~Dl~~~k~t~~~~~gle~a~~~a~~~~~~A~~~L~~lp 307 (334)
+.+.|.+.+....+...-+.+=.+.-|.||+.|- ++ ++|++|+-..+|...|--..+-+...|.+.|...+
T Consensus 57 ~~~~g~~~~~~~~~A~aiEliH~aSLIHDDI~D~--------d~-RRG~pt~h~~~G~~~AIlaGD~Ll~~Af~~l~~~~ 127 (273)
T 3qkc_B 57 CELVGGDRSDAMAAAAAVHLMHVAAYTHENLPLT--------DG-PMSKSEIQHKFDPNIELLTGDGIIPFGLELMARSM 127 (273)
T ss_dssp HHHTTCCGGGTHHHHHHHHHHHHHHHHHHSCCBT--------TB-CSSSSCCCCSSCHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHHHHHcCcccC--------cc-CCCCCCchhhcCHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3344556555556777778888899999999763 12 56777766666666666666666777777777654
No 89
>4err_A Autotransporter adhesin; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.55A {Vibrio vulnificus}
Probab=37.47 E-value=1.3e+02 Score=22.55 Aligned_cols=72 Identities=11% Similarity=0.202 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHHHHh-HHhhHhhhhcCCCCCchHHhhcCchHHHHhHHHHHHHHHHHHHHHHHHHHhhccCCCCChH
Q 019903 236 DEIQSLRRYGRAVGVLYQ-VVDDILEAKAQTPRDEEKKKKKGKSYVAFYGVEKAMEVAEELRAKAKEELDRFKKYGDNVL 314 (334)
Q Consensus 236 ~~~~~l~~~G~~lG~afQ-i~DD~lD~~~~~~~~~~Dl~~~k~t~~~~~gle~a~~~a~~~~~~A~~~L~~lp~~~~~~~ 314 (334)
+..++...+|.-+|-.|| |.|++-+|.... ++| .++ ...+...+.-..+..-|. +...+
T Consensus 9 EL~~aA~V~gK~~G~SYq~iid~l~eyh~~~---~~~------------~~e----~l~~L~~kie~Yl~~hPd-S~Rv~ 68 (90)
T 4err_A 9 ELKERAKVFAKPIGASYQGILDQLDLVHQAK---GRD------------QIA----ASFELNKKINDYIAEHPT-SGRNQ 68 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC---HHH------------HHH----HHHHHHHHHHHHHHHCCS-CHHHH
T ss_pred HHHHHHHHHHhhcCchHHHHHHHHHHHHHHc---chH------------HHH----HHHHHHHHHHHHHhcCCc-hhhHH
Confidence 556778899999999996 888888887654 121 111 122223333334444565 44557
Q ss_pred HHHHHHHHHHhcc
Q 019903 315 PLYSFIDYAADRE 327 (334)
Q Consensus 315 ~L~~l~~~~~~R~ 327 (334)
+|..+.+.+-.|-
T Consensus 69 al~qlldQv~sr~ 81 (90)
T 4err_A 69 ALTQLKEQVTSAL 81 (90)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 8888888887664
No 90
>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A*
Probab=36.96 E-value=2.3e+02 Score=27.06 Aligned_cols=60 Identities=10% Similarity=-0.080 Sum_probs=35.6
Q ss_pred ChhHHHHHHHhhHHHHHHHHHHHHHHhc-CCCHHHHH--HHHHHHHHHHHHHhHHhhHhhhhcCC
Q 019903 204 EPNLVEFVQEKKFGEMSECSAVCGGFLA-GADDDEIQ--SLRRYGRAVGVLYQVVDDILEAKAQT 265 (334)
Q Consensus 204 ~~~~y~~i~~~KTa~Lf~~a~~lGa~la-g~~~~~~~--~l~~~G~~lG~afQi~DD~lD~~~~~ 265 (334)
+.++|..+ +..||....+.+ +....+ ..++++.+ .+.++-+..+...-+.||+..|..+.
T Consensus 285 sleEYl~~-R~~sg~~p~~~l-~e~~~g~~lp~~v~~~p~~~~L~~~~~~i~rL~NDI~Sy~kE~ 347 (433)
T 3v1v_A 285 EVWEYLAM-RQFNNFRPCPTI-TDTVGGYELPADLHARPDMQRVIALAGNATTIVNDLYSYTKEL 347 (433)
T ss_dssp CHHHHHHH-HHHSSSTTTGGG-HHHHHTCCCCHHHHTSHHHHHHHHHHHHHHHHHHHHHSHHHHT
T ss_pred CHHHHHHH-HHHHhHHHHHHH-HHHHcCCCCCHHHHhCchHHHHHHHHHHHHHHhchHHHHHHHH
Confidence 77888876 445554311111 111111 23444433 46677888888889999999987543
No 91
>1ps1_A Pentalenene synthase; antibiotic biosynthesis, sesquiterpene cyclase, lyase; 2.60A {Streptomyces SP} SCOP: a.128.1.4 PDB: 1hm7_A 1hm4_A
Probab=34.02 E-value=2.6e+02 Score=25.03 Aligned_cols=58 Identities=7% Similarity=0.052 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHhHHhhHhhhhcCCCCCchHHhhcC-chHHHHh------HHHHHHHHHHHHHHHHHHHHh
Q 019903 240 SLRRYGRAVGVLYQVVDDILEAKAQTPRDEEKKKKKG-KSYVAFY------GVEKAMEVAEELRAKAKEELD 304 (334)
Q Consensus 240 ~l~~~G~~lG~afQi~DD~lD~~~~~~~~~~Dl~~~k-~t~~~~~------gle~a~~~a~~~~~~A~~~L~ 304 (334)
.+.++-...+...-+.||+..|..+ ..+|. .+.+..+ ..|.|.+.+.+.++++.+.+.
T Consensus 203 ~~~~l~~~~~~i~rL~NDl~S~~kE-------~~~G~~~n~V~~~m~~~g~s~eeA~~~v~~~i~~~~~~~~ 267 (337)
T 1ps1_A 203 VMSAMLQIAVDVNLLLNDIASLEKE-------EARGEQNNMVMILRREHGWSKSRSVSHMQNEVRARLEQYL 267 (337)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHH-------HHTTCCCSHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHH-------HhcCCcchHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 4567788888889999999988633 22222 2333222 356666666666555555443
No 92
>2ihi_A Pyrophosphate synthase; PV092040, structural genomics, structural genomics consortium, SGC, transferase; 2.00A {Plasmodium vivax sai-1} PDB: 3mav_A 3cc9_A* 3ez3_A* 3ldw_A* 3mys_A* 3ph7_A* 3rbm_A* 3ryw_A*
Probab=32.85 E-value=1.6e+02 Score=27.92 Aligned_cols=57 Identities=14% Similarity=0.191 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHhHHhhHhhhhcCCCCCchHHhhcCchHHHHhHHHH--HHHHHHHHHHHHHHHHhhc
Q 019903 242 RRYGRAVGVLYQVVDDILEAKAQTPRDEEKKKKKGKSYVAFYGVEK--AMEVAEELRAKAKEELDRF 306 (334)
Q Consensus 242 ~~~G~~lG~afQi~DD~lD~~~~~~~~~~Dl~~~k~t~~~~~gle~--a~~~a~~~~~~A~~~L~~l 306 (334)
...-+-|=.++=|.||+.| ++++++|++|+-..+|... |-....-+...|.+.|...
T Consensus 111 A~aiEliH~asLIHDDImD--------~s~~RRG~pt~h~~~g~~~~~AI~~gd~L~~~a~~ll~~~ 169 (395)
T 2ihi_A 111 AWCIEILQAAFLVADDIMD--------KGEMRRNKYCWYLLKDVETKNAVNDVLLLYNSIYKLIEIY 169 (395)
T ss_dssp HHHHHHHHHHHHHHHHHHT--------TCSEETTEECGGGSTTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcccc--------CCCCCCCCCCccccCCccHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344566678899999976 3667889988766655443 3333333445566666654
No 93
>3tc1_A Octaprenyl pyrophosphate synthase; all alpha-helices fold, transferase; 2.00A {Helicobacter pylori}
Probab=30.46 E-value=1.2e+02 Score=27.86 Aligned_cols=59 Identities=20% Similarity=0.251 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHhHHhhHhhhhcCCCCCchHHhhcCchHHHHhHHHHHHHHHHHHHHHHHHHHhhc
Q 019903 240 SLRRYGRAVGVLYQVVDDILEAKAQTPRDEEKKKKKGKSYVAFYGVEKAMEVAEELRAKAKEELDRF 306 (334)
Q Consensus 240 ~l~~~G~~lG~afQi~DD~lD~~~~~~~~~~Dl~~~k~t~~~~~gle~a~~~a~~~~~~A~~~L~~l 306 (334)
.+...-+.+=.++-|.||+.| ++++++|++|+-..+|...|--..+-....|.+.|..+
T Consensus 61 ~~A~aiEliH~asLiHDDi~D--------~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~ 119 (315)
T 3tc1_A 61 NLCTIVEMIQTASLLHDDVID--------KATMRRKLPSINALFGNFNAVMLGDVFYSKAFFELSKM 119 (315)
T ss_dssp HHHHHHHHHHHHHHHHHHTC------------------------CCSHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHcCCCC--------CCCCcCCCccHHHHhCchHHHHHHHHHHHHHHHHHHHC
Confidence 445556667778899999966 36778889888777776666666666677777777654
No 94
>3aqb_A Component A of hexaprenyl diphosphate synthase; prenyltransferase, transferase; 2.40A {Micrococcus luteus} PDB: 3aqc_A*
Probab=27.60 E-value=78 Score=25.73 Aligned_cols=38 Identities=18% Similarity=0.250 Sum_probs=26.7
Q ss_pred HHHHHHHHHhCCCCCCCCCCCCCCCCCCCcCChHHHHHHHHHHHHHHHHHHHhc
Q 019903 113 MVHAASLIHDDLPCMDDDPSRRGQPSNHTVYGVDIAILAGDALFPLGFQHIVSH 166 (334)
Q Consensus 113 liH~asLIhDDIp~iD~s~~RRG~pt~h~~~G~~~Avl~GD~L~~~a~~~l~~~ 166 (334)
-|-|+--+.||| =++ . ...-||+||++-+..+.+|++.
T Consensus 53 aIDTsmrv~d~i--~~n-~-------------K~riVLaGD~~Sa~fY~lLa~~ 90 (147)
T 3aqb_A 53 AIDTSMRMQDFI--NED-N-------------KDSFVLSTDVLSALFYKYLSQP 90 (147)
T ss_dssp HHHHHHHHGGGC--CTT-T-------------HHHHHHHHHHHHHHHHHHTBTT
T ss_pred EeccHHHhhccc--ccC-C-------------ccceEeehHHHHHHHHHHHcCh
Confidence 456677778888 121 1 1225699999999999999864
No 95
>2her_A Fragment, farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, structural genomics, structural genomics consortium, SGC; HET: ZOL; 2.37A {Cryptosporidium parvum} PDB: 2o1o_A* 2q58_A*
Probab=27.24 E-value=93 Score=29.29 Aligned_cols=62 Identities=23% Similarity=0.224 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHHHHhHHhhHhhhhcCCCCCchHHhhcCchHHHHhHHHHHHHHHHHHH---HHHHHHHhh
Q 019903 236 DEIQSLRRYGRAVGVLYQVVDDILEAKAQTPRDEEKKKKKGKSYVAFYGVEKAMEVAEELR---AKAKEELDR 305 (334)
Q Consensus 236 ~~~~~l~~~G~~lG~afQi~DD~lD~~~~~~~~~~Dl~~~k~t~~~~~gle~a~~~a~~~~---~~A~~~L~~ 305 (334)
+.+..+...-+.+=.++=|.||+.| ++++++|++|+-..+|...|--..+-.. ..|.+.|..
T Consensus 95 ~~~~~~A~avEllH~asLIHDDImD--------~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~a~~ll~~ 159 (368)
T 2her_A 95 DSIYLLGWVVEAIQALILIADDIMD--------SGKFRRGAPCWYIVHGQSNAINDIFFLKMLSLSLIFELSS 159 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT--------TCCEETTEECHHHHTHHHHHHHHHHHHHHHHHHHHTTTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHccccc--------CCCCCCCCccHHhcCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555566777788999999977 3567889998887777665655555555 555555554
No 96
>1yhl_A Farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, bisphosphonate, dimethyl ALLY pyrophosphate sulfate, FPPS, transferase; HET: DMA RIS; 1.95A {Trypanosoma cruzi} PDB: 1yhk_A* 1yhm_A* 3iba_A* 3ick_A* 3icm_A* 3icn_A* 3icz_A* 3id0_A*
Probab=25.15 E-value=2.1e+02 Score=26.46 Aligned_cols=56 Identities=18% Similarity=0.184 Sum_probs=39.0
Q ss_pred HHHHHHHHHHhHHhhHhhhhcCCCCCchHHhhcCchHHHHhHH--HHHHHHHHHHHHHHHHHHhhc
Q 019903 243 RYGRAVGVLYQVVDDILEAKAQTPRDEEKKKKKGKSYVAFYGV--EKAMEVAEELRAKAKEELDRF 306 (334)
Q Consensus 243 ~~G~~lG~afQi~DD~lD~~~~~~~~~~Dl~~~k~t~~~~~gl--e~a~~~a~~~~~~A~~~L~~l 306 (334)
..-+.+=.++=|.||+.| ++++++|++|+-..+|. ..|--...-....|.+.|..+
T Consensus 85 ~avEliH~asLiHDDI~D--------~s~~RRG~pt~h~~~g~~~~~Ail~Gd~L~~~a~~~l~~~ 142 (362)
T 1yhl_A 85 WMIEFLQAHYLVEDDIMD--------GSVMRRGKPCWYRFPGVTTQCAINDGIILKSWTQIMAWHY 142 (362)
T ss_dssp HHHHHHHHHHHHHHHHHH--------TCCEETTEECGGGSTTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccC--------CCCCCCCCccHHhccCccHhHHHHHHHHHHHHHHHHHHHh
Confidence 345556667889999987 35678888888777665 345555555667777777765
No 97
>2qis_A Farnesyl pyrophosphate synthetase; trans-prenyltransferase, structural genomics, structural GEN consortium, SGC, transferase; HET: RIS; 1.80A {Homo sapiens} PDB: 4dem_F* 1yv5_A* 1yq7_A* 2opm_A* 2opn_A* 3cp6_A* 2rah_A* 2vf6_A* 1zw5_A* 3b7l_A* 3s4j_A* 3rye_A* 3n45_F* 2f89_F* 2f7m_F* 2f8z_F* 2f8c_F* 2f92_F* 2f9k_F* 3n1v_F* ...
Probab=24.49 E-value=1.8e+02 Score=27.25 Aligned_cols=56 Identities=20% Similarity=0.191 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHhHHhhHhhhhcCCCCCchHHhhcCchHHHHhHHH-HHHHHHHHHHHHHHHHHhh
Q 019903 242 RRYGRAVGVLYQVVDDILEAKAQTPRDEEKKKKKGKSYVAFYGVE-KAMEVAEELRAKAKEELDR 305 (334)
Q Consensus 242 ~~~G~~lG~afQi~DD~lD~~~~~~~~~~Dl~~~k~t~~~~~gle-~a~~~a~~~~~~A~~~L~~ 305 (334)
...-+.|=.++-|.||+.| ++++++|++|+-..+|.. .|-....-....|.+.|..
T Consensus 110 A~avEliH~asLIHDDImD--------~s~~RRG~pt~h~~~G~~~~Ai~~g~~l~~~a~~~l~~ 166 (374)
T 2qis_A 110 GWCVELLQAFFLVADDIMD--------SSLTRRGQICWYQKPGVGLDAINDANLLEACIYRLLKL 166 (374)
T ss_dssp HHHHHHHHHHHHHHHHHHT--------TCCEETTEECGGGSTTTGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccccC--------CCCCCCCCccHHHhcCchHHHHHHHHHHHHHHHHHHHH
Confidence 3445556667889999976 345677777765554433 2333333333344444444
No 98
>3ls0_A SLL1638 protein, PSBQ; photosynthesis, four helix bundle; 1.80A {Synechocystis SP} PDB: 3ls1_A
Probab=21.87 E-value=64 Score=26.00 Aligned_cols=25 Identities=20% Similarity=-0.009 Sum_probs=15.0
Q ss_pred cchHHHHHHHHHHhCCCchhhHHHH
Q 019903 84 RAPPVMCVAACELFGVNRIAAFPTA 108 (334)
Q Consensus 84 rlRp~l~ll~~~~~g~~~~~~~~lA 108 (334)
-+|--+..+.-.++..+...+..++
T Consensus 65 ~lr~~m~~l~~~Llp~dqk~A~~la 89 (133)
T 3ls0_A 65 QLRRDMLGLASSLLPKDQDKAKTLA 89 (133)
T ss_dssp THHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcChhhhHHHHHHH
Confidence 3677777777666655555554444
No 99
>1uby_A FPS, farnesyl diphosphate synthase; transferase, isoprene biosynthesis, cholesterol biosynthesis; HET: DMA; 2.40A {Gallus gallus} SCOP: a.128.1.1 PDB: 1ubw_A* 1ubv_A* 1ubx_A* 1fps_A
Probab=21.15 E-value=2.6e+02 Score=25.97 Aligned_cols=37 Identities=14% Similarity=0.144 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHhHHhhHhhhhcCCCCCchHHhhcCchHHHHhH
Q 019903 240 SLRRYGRAVGVLYQVVDDILEAKAQTPRDEEKKKKKGKSYVAFYG 284 (334)
Q Consensus 240 ~l~~~G~~lG~afQi~DD~lD~~~~~~~~~~Dl~~~k~t~~~~~g 284 (334)
.+...-+.|=.++=|.||+.| ++++++|++|+-..+|
T Consensus 101 ~~A~aiEliH~asLiHDDImD--------~s~~RRG~pt~h~~~g 137 (367)
T 1uby_A 101 AVGWCIELFQAASLVADDIMD--------QSLTRRGQLCWYKKEG 137 (367)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH--------TCCEETTEECGGGSTT
T ss_pred HHHHHHHHHHHHHHHhCcccC--------CCCCCCCCCChhhccC
Confidence 344445556667889999977 2456667766655444
Done!