BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019907
(334 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3IHR|A Chain A, Crystal Structure Of Uch37
Length = 328
Score = 306 bits (783), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 161/335 (48%), Positives = 219/335 (65%), Gaps = 26/335 (7%)
Query: 3 WCTIESDPGVFTELIQQMQVKGVQVXXXXXXXXXXXXXXRPVYGLIFLFKWRPGEKDDRV 62
WC ESDPGVFTELI+ +G QV +PV+GLIFLFKW+PGE+
Sbjct: 8 WCLXESDPGVFTELIKGFGCRGAQVEEIWSLEPENFEKLKPVHGLIFLFKWQPGEEPAGS 67
Query: 63 VIKDPN-PNLFFASQVINNACATQAILSILLNCP--DIDIGPELSKLKEFTKNFPPELKG 119
V++D +FFA QVINNACATQAI+S+LLNC D+ +G LS+ KEF+++F KG
Sbjct: 68 VVQDSRLDTIFFAKQVINNACATQAIVSVLLNCTHQDVHLGETLSEFKEFSQSFDAAXKG 127
Query: 120 LAINNSDAIRAAHNSFARPEPFVPEEQKAAGKDDDVYHFISYIPVDGVLYELDGLKEGPI 179
LA++NSD IR HNSFAR + F + K + K++D +HF+SY+PV+G LYELDGL+EGPI
Sbjct: 128 LALSNSDVIRQVHNSFARQQXF-EFDTKTSAKEEDAFHFVSYVPVNGRLYELDGLREGPI 186
Query: 180 SLGPCTGGQGDMDWLQMVQPVIQERIERYSKSEIRFNLMAVIKNRKELYTAELKEFQRKR 239
LG C DW+ V+PVI++RI++YS+ EIRFNL A++ +RK +Y ++ E QR
Sbjct: 187 DLGACNQD----DWISAVRPVIEKRIQKYSEGEIRFNLXAIVSDRKXIYEQKIAELQR-- 240
Query: 240 ERILQQLASLQSERMVDKTSFEALNKSLSEVNAGIEGATEKILMEEE--KFKKWRTENIR 297
QLA + + N LS + + E A + L+EEE K K+++ ENIR
Sbjct: 241 -----QLAE-------EPXDTDQGNSXLSAIQS--EVAKNQXLIEEEVQKLKRYKIENIR 286
Query: 298 RKHNYIPFLFNFLKILAEKKQLKPLIEKAKQKTSS 332
RKHNY+PF+ LK LAE +QL PL+EKAK+K ++
Sbjct: 287 RKHNYLPFIXELLKTLAEHQQLIPLVEKAKEKQNA 321
>pdb|3RIS|A Chain A, Crystal Structure Of The Catalytic Domain Of Uchl5, A
Proteasome- Associated Human Deubiquitinating Enzyme,
Reveals An Unproductive Form Of The Enzyme
pdb|3RIS|B Chain B, Crystal Structure Of The Catalytic Domain Of Uchl5, A
Proteasome- Associated Human Deubiquitinating Enzyme,
Reveals An Unproductive Form Of The Enzyme
pdb|3RIS|C Chain C, Crystal Structure Of The Catalytic Domain Of Uchl5, A
Proteasome- Associated Human Deubiquitinating Enzyme,
Reveals An Unproductive Form Of The Enzyme
pdb|3RIS|D Chain D, Crystal Structure Of The Catalytic Domain Of Uchl5, A
Proteasome- Associated Human Deubiquitinating Enzyme,
Reveals An Unproductive Form Of The Enzyme
Length = 245
Score = 256 bits (654), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 123/238 (51%), Positives = 167/238 (70%), Gaps = 8/238 (3%)
Query: 3 WCTIESDPGVFTELIQQMQVKGVQVXXXXXXXXXXXXXXRPVYGLIFLFKWRPGEKDDRV 62
WC +ESDPGVFTELI+ +G QV +PV+GLIFLFKW+PGE+
Sbjct: 13 WCLMESDPGVFTELIKGFGCRGAQVEEIWSLEPENFEKLKPVHGLIFLFKWQPGEEPAGS 72
Query: 63 VIKDPN-PNLFFASQVINNACATQAILSILLNCP--DIDIGPELSKLKEFTKNFPPELKG 119
V++D +FFA QVINNACATQAI+S+LLNC D+ +G LS+ KEF+++F +KG
Sbjct: 73 VVQDSRLDTIFFAKQVINNACATQAIVSVLLNCTHQDVHLGETLSEFKEFSQSFDAAMKG 132
Query: 120 LAINNSDAIRAAHNSFARPEPFVPEEQKAAGKDDDVYHFISYIPVDGVLYELDGLKEGPI 179
LA++NSD IR HNSFAR + F + K + K++D +HF+SY+PV+G LYELDGL+EGPI
Sbjct: 133 LALSNSDVIRQVHNSFARQQMF-EFDTKTSAKEEDAFHFVSYVPVNGRLYELDGLREGPI 191
Query: 180 SLGPCTGGQGDMDWLQMVQPVIQERIERYSKSEIRFNLMAVIKNRKELYTAELKEFQR 237
LG C DW+ V+PVI++RI++YS+ EIRFNLMA++ +RK +Y ++ E QR
Sbjct: 192 DLGACN----QDDWISAVRPVIEKRIQKYSEGEIRFNLMAIVSDRKMIYEQKIAELQR 245
>pdb|3A7S|A Chain A, Catalytic Domain Of Uch37
Length = 228
Score = 244 bits (623), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 118/226 (52%), Positives = 159/226 (70%), Gaps = 8/226 (3%)
Query: 3 WCTIESDPGVFTELIQQMQVKGVQVXXXXXXXXXXXXXXRPVYGLIFLFKWRPGEKDDRV 62
WC +ESDPGVFTELI+ +G QV +PV+GLIFLFKW+PGE+
Sbjct: 8 WCLMESDPGVFTELIKGFGCRGAQVEEIWSLEPENFEKLKPVHGLIFLFKWQPGEEPAGS 67
Query: 63 VIKDPN-PNLFFASQVINNACATQAILSILLNCP--DIDIGPELSKLKEFTKNFPPELKG 119
V++D +FFA QVINNA ATQAI+S+LLNC D+ +G LS+ KEF+++F +KG
Sbjct: 68 VVQDSRLDTIFFAKQVINNAAATQAIVSVLLNCTHQDVHLGETLSEFKEFSQSFDAAMKG 127
Query: 120 LAINNSDAIRAAHNSFARPEPFVPEEQKAAGKDDDVYHFISYIPVDGVLYELDGLKEGPI 179
LA++NSD IR HNSFAR + F + K + K++D +HF+SY+PV+G LYELDGL+EGPI
Sbjct: 128 LALSNSDVIRQVHNSFARQQMF-EFDTKTSAKEEDAFHFVSYVPVNGRLYELDGLREGPI 186
Query: 180 SLGPCTGGQGDMDWLQMVQPVIQERIERYSKSEIRFNLMAVIKNRK 225
LG C DW+ V+PVI++RI++YS+ EIRFNLMA++ +RK
Sbjct: 187 DLGACN----QDDWISAVRPVIEKRIQKYSEGEIRFNLMAIVSDRK 228
>pdb|3TB3|A Chain A, Crystal Structure Of The Uch Domain Of Uch-L5 With 6
Residues Deleted
pdb|3TB3|B Chain B, Crystal Structure Of The Uch Domain Of Uch-L5 With 6
Residues Deleted
Length = 229
Score = 243 bits (619), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 117/225 (52%), Positives = 158/225 (70%), Gaps = 8/225 (3%)
Query: 3 WCTIESDPGVFTELIQQMQVKGVQVXXXXXXXXXXXXXXRPVYGLIFLFKWRPGEKDDRV 62
WC +ESDPGVFTELI+ +G QV +PV+GLIFLFKW+PGE+
Sbjct: 10 WCLMESDPGVFTELIKGFGCRGAQVEEIWSLEPENFEKLKPVHGLIFLFKWQPGEEPAGS 69
Query: 63 VIKDPN-PNLFFASQVINNACATQAILSILLNCP--DIDIGPELSKLKEFTKNFPPELKG 119
V++D +FFA QVINNA ATQAI+S+LLNC D+ +G LS+ KEF+++F +KG
Sbjct: 70 VVQDSRLDTIFFAKQVINNAAATQAIVSVLLNCTHQDVHLGETLSEFKEFSQSFDAAMKG 129
Query: 120 LAINNSDAIRAAHNSFARPEPFVPEEQKAAGKDDDVYHFISYIPVDGVLYELDGLKEGPI 179
LA++NSD IR HNSFAR + F + K + K++D +HF+SY+PV+G LYELDGL+EGPI
Sbjct: 130 LALSNSDVIRQVHNSFARQQMF-EFDTKTSAKEEDAFHFVSYVPVNGRLYELDGLREGPI 188
Query: 180 SLGPCTGGQGDMDWLQMVQPVIQERIERYSKSEIRFNLMAVIKNR 224
LG C DW+ V+PVI++RI++YS+ EIRFNLMA++ +R
Sbjct: 189 DLGACN----QDDWISAVRPVIEKRIQKYSEGEIRFNLMAIVSDR 229
>pdb|3RII|A Chain A, Crystal Structure Of The Catalytic Domain Of Uchl5, A
Proteasome- Associated Human Deubiquitinating Enzyme,
Reveals An Unproductive Form Of The Enzyme
pdb|3RII|B Chain B, Crystal Structure Of The Catalytic Domain Of Uchl5, A
Proteasome- Associated Human Deubiquitinating Enzyme,
Reveals An Unproductive Form Of The Enzyme
Length = 233
Score = 239 bits (609), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 117/226 (51%), Positives = 156/226 (69%), Gaps = 8/226 (3%)
Query: 3 WCTIESDPGVFTELIQQMQVKGVQVXXXXXXXXXXXXXXRPVYGLIFLFKWRPGEKDDRV 62
WC ESDPGVFTELI+ +G QV +PV+GLIFLFKW+PGE+
Sbjct: 13 WCLXESDPGVFTELIKGFGCRGAQVEEIWSLEPENFEKLKPVHGLIFLFKWQPGEEPAGS 72
Query: 63 VIKDPN-PNLFFASQVINNACATQAILSILLNCP--DIDIGPELSKLKEFTKNFPPELKG 119
V++D +FFA QVINNA ATQAI+S+LLNC D+ +G LS+ KEF+++F KG
Sbjct: 73 VVQDSRLDTIFFAKQVINNASATQAIVSVLLNCTHQDVHLGETLSEFKEFSQSFDAAXKG 132
Query: 120 LAINNSDAIRAAHNSFARPEPFVPEEQKAAGKDDDVYHFISYIPVDGVLYELDGLKEGPI 179
LA++NSD IR HNSFAR + F + K + K++D +HF+SY+PV+G LYELDGL+EGPI
Sbjct: 133 LALSNSDVIRQVHNSFARQQXF-EFDTKTSAKEEDAFHFVSYVPVNGRLYELDGLREGPI 191
Query: 180 SLGPCTGGQGDMDWLQMVQPVIQERIERYSKSEIRFNLMAVIKNRK 225
LG C DW+ V+PVI++RI++YS+ EIRFNL A++ +RK
Sbjct: 192 DLGACN----QDDWISAVRPVIEKRIQKYSEGEIRFNLXAIVSDRK 233
>pdb|1XD3|A Chain A, Crystal Structure Of Uchl3-Ubvme Complex
pdb|1XD3|C Chain C, Crystal Structure Of Uchl3-Ubvme Complex
pdb|1UCH|A Chain A, Deubiquitinating Enzyme Uch-L3 (Human) At 1.8 Angstrom
Resolution
Length = 230
Score = 75.1 bits (183), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 67/235 (28%), Positives = 107/235 (45%), Gaps = 30/235 (12%)
Query: 3 WCTIESDPGVFTELIQQMQVKGVQ-----VXXXXXXXXXXXXXXRPVYGLIFLF----KW 53
W +E++P V + ++Q+ G+ V RPV ++ LF K+
Sbjct: 6 WLPLEANPEVTNQFLKQL---GLHPNWQFVDVYGMDPELLSMVPRPVCAVLLLFPITEKY 62
Query: 54 RPGEKDDRVVIK----DPNPNLFFASQVINNACATQAILSILLNCPD---IDIGPELSKL 106
++ IK D +++F Q I+NAC T ++ + N D + G L K
Sbjct: 63 EVFRTEEEEKIKSQGQDVTSSVYFMKQTISNACGTIGLIHAIANNKDKMHFESGSTLKKF 122
Query: 107 KEFTKNFPPELKGLAINNSDAIRAAHNSFARPEPFVPEEQKAAGKDDDV-YHFISYIPVD 165
E + + PE + + N DAIR H + A + +A D+ V HFI+ + VD
Sbjct: 123 LEESVSMSPEERARYLENYDAIRVTHETSAHEG-----QTEAPSIDEKVDLHFIALVHVD 177
Query: 166 GVLYELDGLKEGPISLGPCTGGQGDMDWLQMVQPVIQERIERYSKSEIRFNLMAV 220
G LYELDG K PI+ G + D L+ V ++ +ER E+RFN +A+
Sbjct: 178 GHLYELDGRKPFPINHGETS----DETLLEDAIEVCKKFMER-DPDELRFNAIAL 227
>pdb|3IRT|A Chain A, Crystal Structure Of The I93m Mutant Of Ubiquitin
Carboxy-Te Hydrolase L1
pdb|3IRT|B Chain B, Crystal Structure Of The I93m Mutant Of Ubiquitin
Carboxy-Te Hydrolase L1
pdb|3KVF|A Chain A, Crystal Structure Of The I93m Mutant Of Ubiquitin Carboxy
Te Hydrolase L1 Bound To Ubiquitin Vinylmethylester
Length = 228
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 89/189 (47%), Gaps = 21/189 (11%)
Query: 43 PVYGLIFLFKWRPGEKDDR------VVIKDPNPNLFFASQVINNACATQAILSILLNCPD 96
P L+ LF ++ R + ++ +P ++F Q I N+C T ++ + N D
Sbjct: 50 PACALLLLFPLTAQHENFRKKQIEELKGQEVSPKVYFMKQTIGNSCGTMGLIHAVANNQD 109
Query: 97 IDIGPELSKLKEF---TKNFPPELKGLAINNSDAIRAAHNSFARPEPFVPEEQKAAGKDD 153
+ S LK+F T+ PE + ++AI+AAH++ V +E + D
Sbjct: 110 KLGFEDGSVLKQFLSETEKMSPEDRAKCFEKNEAIQAAHDA-------VAQEGQCRVDDK 162
Query: 154 DVYHFISYIPVDGVLYELDGLKEGPISLGPCTGGQGDMDWLQMVQPVIQERIERYSKSEI 213
+HFI + VDG LYELDG P++ G + L+ V +E ER + E+
Sbjct: 163 VNFHFILFNNVDGHLYELDGRMPFPVN----HGASSEDTLLKDAAKVCREFTER-EQGEV 217
Query: 214 RFNLMAVIK 222
RF+ +A+ K
Sbjct: 218 RFSAVALCK 226
>pdb|2LEN|A Chain A, Solution Structure Of Uchl1 S18y Variant
Length = 231
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 89/189 (47%), Gaps = 21/189 (11%)
Query: 43 PVYGLIFLFKWRPGEKDDR------VVIKDPNPNLFFASQVINNACATQAILSILLNCPD 96
P L+ LF ++ R + ++ +P ++F Q I N+C T ++ + N D
Sbjct: 45 PACALLLLFPLTAQHENFRKKQIEELKGQEVSPKVYFMKQTIGNSCGTIGLIHAVANNQD 104
Query: 97 IDIGPELSKLKEF---TKNFPPELKGLAINNSDAIRAAHNSFARPEPFVPEEQKAAGKDD 153
+ S LK+F T+ PE + ++AI+AAH++ V +E + D
Sbjct: 105 KLGFEDGSVLKQFLSETEKMSPEDRAKCFEKNEAIQAAHDA-------VAQEGQCRVDDK 157
Query: 154 DVYHFISYIPVDGVLYELDGLKEGPISLGPCTGGQGDMDWLQMVQPVIQERIERYSKSEI 213
+HFI + VDG LYELDG P++ G + L+ V +E ER + E+
Sbjct: 158 VNFHFILFNNVDGHLYELDGRMPFPVN----HGASSEDTLLKDAAKVCREFTER-EQGEV 212
Query: 214 RFNLMAVIK 222
RF+ +A+ K
Sbjct: 213 RFSAVALCK 221
>pdb|2ETL|A Chain A, Crystal Structure Of Ubiquitin Carboxy-terminal Hydrolase
L1 (uch-l1)
pdb|2ETL|B Chain B, Crystal Structure Of Ubiquitin Carboxy-terminal Hydrolase
L1 (uch-l1)
pdb|3KW5|A Chain A, Crystal Structure Of Ubiquitin Carboxy Terminal Hydrolase
L1 Ubiquitin Vinylmethylester
pdb|4DM9|A Chain A, The Crystal Structure Of Ubiquitin Carboxy-Terminal
Hydrolase L1 (Uchl1) Bound To A Tripeptide Fluoromethyl
Ketone Z-Vae(Ome)-Fmk
pdb|4DM9|B Chain B, The Crystal Structure Of Ubiquitin Carboxy-Terminal
Hydrolase L1 (Uchl1) Bound To A Tripeptide Fluoromethyl
Ketone Z-Vae(Ome)-Fmk
Length = 228
Score = 65.5 bits (158), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 89/189 (47%), Gaps = 21/189 (11%)
Query: 43 PVYGLIFLFKWRPGEKDDR------VVIKDPNPNLFFASQVINNACATQAILSILLNCPD 96
P L+ LF ++ R + ++ +P ++F Q I N+C T ++ + N D
Sbjct: 50 PACALLLLFPLTAQHENFRKKQIEELKGQEVSPKVYFMKQTIGNSCGTIGLIHAVANNQD 109
Query: 97 IDIGPELSKLKEF---TKNFPPELKGLAINNSDAIRAAHNSFARPEPFVPEEQKAAGKDD 153
+ S LK+F T+ PE + ++AI+AAH++ V +E + D
Sbjct: 110 KLGFEDGSVLKQFLSETEKMSPEDRAKCFEKNEAIQAAHDA-------VAQEGQCRVDDK 162
Query: 154 DVYHFISYIPVDGVLYELDGLKEGPISLGPCTGGQGDMDWLQMVQPVIQERIERYSKSEI 213
+HFI + VDG LYELDG P++ G + L+ V +E ER + E+
Sbjct: 163 VNFHFILFNNVDGHLYELDGRMPFPVN----HGASSEDTLLKDAAKVCREFTER-EQGEV 217
Query: 214 RFNLMAVIK 222
RF+ +A+ K
Sbjct: 218 RFSAVALCK 226
>pdb|3IFW|A Chain A, Crystal Structure Of The S18y Variant Of Ubiquitin Carboxy
T Hydrolase L1 Bound To Ubiquitin Vinylmethylester
Length = 228
Score = 65.1 bits (157), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 48/158 (30%), Positives = 78/158 (49%), Gaps = 15/158 (9%)
Query: 68 NPNLFFASQVINNACATQAILSILLNCPDIDIGPELSKLKEF---TKNFPPELKGLAINN 124
+P ++F Q I N+C T ++ + N D + S LK+F T+ PE +
Sbjct: 81 SPKVYFMKQTIGNSCGTIGLIHAVANNQDKLGFEDGSVLKQFLSETEKMSPEDRAKCFEK 140
Query: 125 SDAIRAAHNSFARPEPFVPEEQKAAGKDDDVYHFISYIPVDGVLYELDGLKEGPISLGPC 184
++AI+AAH++ V +E + D +HFI + VDG LYELDG P++
Sbjct: 141 NEAIQAAHDA-------VAQEGQCRVDDKVNFHFILFNNVDGHLYELDGRMPFPVN---- 189
Query: 185 TGGQGDMDWLQMVQPVIQERIERYSKSEIRFNLMAVIK 222
G + L+ V +E ER + E+RF+ +A+ K
Sbjct: 190 HGASSEDTLLKDAAKVCREFTER-EQGEVRFSAVALCK 226
>pdb|2WDT|A Chain A, Crystal Structure Of Plasmodium Falciparum Uchl3 In
Complex With The Suicide Inhibitor Ubvme
pdb|2WDT|C Chain C, Crystal Structure Of Plasmodium Falciparum Uchl3 In
Complex With The Suicide Inhibitor Ubvme
pdb|2WE6|A Chain A, Crystal Structure Of Plasmodium Falciparum Ubiquitin
Carboxyl-Terminal Hydrolase 3 (Uchl3)
pdb|2WE6|B Chain B, Crystal Structure Of Plasmodium Falciparum Ubiquitin
Carboxyl-Terminal Hydrolase 3 (Uchl3)
Length = 232
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/193 (26%), Positives = 90/193 (46%), Gaps = 24/193 (12%)
Query: 42 RPVYGLIFLFKWRPG-----EKDDRVVIKDPNPNLFFASQVINNACATQAILSI---LLN 93
+PV +IFL+ +D+ +K+ N++F Q I N+C T A+L + L N
Sbjct: 47 QPVQAVIFLYPVNDNIVSENNTNDKHNLKENFDNVWFIKQYIPNSCGTIALLHLYGNLRN 106
Query: 94 CPDIDIGPELSKLKEFTKNFPPELKGLAINNSDAIRAAHNSFARPEPFVPEEQKAAGKDD 153
++D L E +G + N+ +I H+ F + +DD
Sbjct: 107 KFELDKDSVLDDFFNKVNEMSAEKRGQELKNNKSIENLHHEFC---------GQVENRDD 157
Query: 154 --DV-YHFISYIPVDGVLYELDGLKEGPISLGPCTGGQGDMDWLQMVQPVIQERIERYSK 210
DV HFI ++ ++G + ELDG K+ P ++ T G ++L +IQ++ K
Sbjct: 158 ILDVDTHFIVFVQIEGKIIELDGRKDHP-TVHCFTNGD---NFLYDTGKIIQDKFIEKCK 213
Query: 211 SEIRFNLMAVIKN 223
++RF+ +AVI N
Sbjct: 214 DDLRFSALAVIPN 226
>pdb|1CMX|A Chain A, Structural Basis For The Specificity Of Ubiquitin C-
Terminal Hydrolases
pdb|1CMX|C Chain C, Structural Basis For The Specificity Of Ubiquitin C-
Terminal Hydrolases
Length = 235
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/213 (22%), Positives = 81/213 (38%), Gaps = 19/213 (8%)
Query: 6 IESDPGVFTELIQQMQVKGVQVXXXXXXXXXXXXXX---RPVYGLIFLFKWRPGEKDDRV 62
IES+P VFT ++ +K RPV ++ LF K
Sbjct: 11 IESNPEVFTNFAHKLGLKNEWAYFDIYSLTEPELLAFLPRPVKAIVLLFPINEDRKSSTS 70
Query: 63 VIKDPNPNLFFASQVINNACATQAILSILLNCPDI-DIGPELSKLKEFTKNFPPELKGLA 121
+ ++ + Q + NAC AIL L N + + G +L + +
Sbjct: 71 QQITSSYDVIWFKQSVKNACGLYAILHSLSNNQSLLEPGSDLDNFLKSQSDTSSSKNRFD 130
Query: 122 INNSD-----AIRAAHNSFARPEPFVPEEQKAAGKDDDVYHFISYIPVDGVLYELDGLK- 175
+D I+ +F+ + PE D H+I+Y+ +G ++ELDG
Sbjct: 131 DVTTDQFVLNVIKENVQTFSTGQSEAPEATA-----DTNLHYITYVEENGGIFELDGRNL 185
Query: 176 EGPISLGPCTGGQGDMDWLQMVQPVIQERIERY 208
GP+ LG D+ + Q +++ R+ Y
Sbjct: 186 SGPLYLGKSDPTATDL----IEQELVRVRVASY 214
>pdb|1FPM|A Chain A, Monovalent Cation Binding Sites In
N10-formyltetrahydrofolate Synthetase From Moorella
Thermoacetica
pdb|1FPM|B Chain B, Monovalent Cation Binding Sites In
N10-formyltetrahydrofolate Synthetase From Moorella
Thermoacetica
pdb|1FP7|A Chain A, Monovalent Cation Binding Sites In
N10-Formyltetrahydrofolate Synthetase From Moorella
Thermoacetica
pdb|1FP7|B Chain B, Monovalent Cation Binding Sites In
N10-Formyltetrahydrofolate Synthetase From Moorella
Thermoacetica
pdb|3PZX|A Chain A, Native Crystal Structure Of N10-Formyltetrahydrofolate
Synthetase
pdb|3PZX|B Chain B, Native Crystal Structure Of N10-Formyltetrahydrofolate
Synthetase
pdb|3QB6|A Chain A, Crystal Strucutre Of N10-Formyltetrahydrofolate Synthetase
With Folate
pdb|3QB6|B Chain B, Crystal Strucutre Of N10-Formyltetrahydrofolate Synthetase
With Folate
pdb|3RBO|A Chain A, Crystal Structure Of N10-Formyltetrahydrofolate Synthetase
With Adp And Formylphosphate
pdb|3RBO|B Chain B, Crystal Structure Of N10-Formyltetrahydrofolate Synthetase
With Adp And Formylphosphate
pdb|3SIN|A Chain A, Crystal Strucutre Of N10-Formyltetrahydrofolate Synthetase
With Zd9331 And Formylphosphate
pdb|3SIN|B Chain B, Crystal Strucutre Of N10-Formyltetrahydrofolate Synthetase
With Zd9331 And Formylphosphate
pdb|3QUS|A Chain A, Crystal Strucutre Of N10-Formyltetrahydrofolate Synthetase
With Atpgs
pdb|3QUS|B Chain B, Crystal Strucutre Of N10-Formyltetrahydrofolate Synthetase
With Atpgs
Length = 557
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 43/88 (48%), Gaps = 8/88 (9%)
Query: 167 VLYELDGLKEGPISLGPCTGGQGDMDWLQMVQPVIQERIERYSKSEIRFNLMAVIKNR-- 224
+LYEL ++L GG+G L++ + V+Q R S + +NL IK++
Sbjct: 394 LLYELCAKAGAEVALSWAKGGEG---GLELARKVLQTLESRPSNFHVLYNLDLSIKDKIA 450
Query: 225 ---KELYTAELKEFQRKRERILQQLASL 249
E+Y A+ + + ++ +Q+ SL
Sbjct: 451 KIATEIYGADGVNYTAEADKAIQRYESL 478
>pdb|1EG7|A Chain A, The Crystal Structure Of Formyltetrahydrofolate Synthetase
From Moorella Thermoacetica
pdb|1EG7|B Chain B, The Crystal Structure Of Formyltetrahydrofolate Synthetase
From Moorella Thermoacetica
Length = 557
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 43/88 (48%), Gaps = 8/88 (9%)
Query: 167 VLYELDGLKEGPISLGPCTGGQGDMDWLQMVQPVIQERIERYSKSEIRFNLMAVIKNR-- 224
+LYEL ++L GG+G L++ + V+Q R S + +NL IK++
Sbjct: 394 LLYELCAKAGAEVALSWAKGGEG---GLELARKVLQTLESRPSNFHVLYNLDLSIKDKIA 450
Query: 225 ---KELYTAELKEFQRKRERILQQLASL 249
E+Y A+ + + ++ +Q+ SL
Sbjct: 451 KIATEIYGADGVNYTAEADKAIQRYESL 478
>pdb|2DOS|A Chain A, Structural Basis For The Recognition Of Lys48-Linked
Polyubiquitin Chain By The Josephin Domain Of Ataxin-3,
A Putative Deubiquitinating Enzyme
Length = 176
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 4/43 (9%)
Query: 58 KDDRVVIKDPNPNL----FFASQVINNACATQAILSILLNCPD 96
+D R ++ P+ N+ FF+ QVI+NA + IL N P+
Sbjct: 61 EDYRTFLQQPSGNMDDSGFFSIQVISNALKVWGLELILFNSPE 103
>pdb|2AGA|A Chain A, De-Ubiquitinating Function Of Ataxin-3: Insights From The
Solution Structure Of The Josephin Domain
Length = 190
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 4/43 (9%)
Query: 58 KDDRVVIKDPNPNL----FFASQVINNACATQAILSILLNCPD 96
+D R ++ P+ N+ FF+ QVI+NA + IL N P+
Sbjct: 61 EDYRTFLQQPSGNMDDSGFFSIQVISNALKVWGLELILFNSPE 103
>pdb|2JRI|A Chain A, Solution Structure Of The Josephin Domain Of Ataxin-3 In
Complex With Ubiquitin Molecule.
pdb|1YZB|A Chain A, Solution Structure Of The Josephin Domain Of Ataxin-3
Length = 182
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 4/43 (9%)
Query: 58 KDDRVVIKDPNPNL----FFASQVINNACATQAILSILLNCPD 96
+D R ++ P+ N+ FF+ QVI+NA + IL N P+
Sbjct: 56 EDYRTFLQQPSGNMDDSGFFSIQVISNALKVWGLELILFNSPE 98
>pdb|1TCO|B Chain B, Ternary Complex Of A Calcineurin A Fragment, Calcineurin
B, Fkbp12 And The Immunosuppressant Drug Fk506
(tacrolimus)
pdb|1AUI|B Chain B, Human Calcineurin Heterodimer
pdb|1M63|B Chain B, Crystal Structure Of Calcineurin-Cyclophilin-Cyclosporin
Shows Common But Distinct Recognition Of
Immunophilin-Drug Complexes
pdb|1M63|F Chain F, Crystal Structure Of Calcineurin-Cyclophilin-Cyclosporin
Shows Common But Distinct Recognition Of
Immunophilin-Drug Complexes
Length = 169
Score = 28.1 bits (61), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 39/78 (50%), Gaps = 1/78 (1%)
Query: 185 TGGQGDMDWLQMVQPVIQERIERYSKSEIRFNLMAVIKNRKELYTAELKEFQRKRERILQ 244
T G G++D+ + ++ V Q ++ + ++RF + K+ Y + + FQ + +
Sbjct: 63 TDGNGEVDFKEFIEGVSQFSVKGDKEQKLRFAF-RIYDMDKDGYISNGELFQVLKMMVGN 121
Query: 245 QLASLQSERMVDKTSFEA 262
L Q +++VDKT A
Sbjct: 122 NLKDTQLQQIVDKTIINA 139
>pdb|1MF8|B Chain B, Crystal Structure Of Human Calcineurin Complexed With
Cyclosporin A And Human Cyclophilin
Length = 170
Score = 28.1 bits (61), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 39/78 (50%), Gaps = 1/78 (1%)
Query: 185 TGGQGDMDWLQMVQPVIQERIERYSKSEIRFNLMAVIKNRKELYTAELKEFQRKRERILQ 244
T G G++D+ + ++ V Q ++ + ++RF + K+ Y + + FQ + +
Sbjct: 64 TDGNGEVDFKEFIEGVSQFSVKGDKEQKLRFAF-RIYDMDKDGYISNGELFQVLKMMVGN 122
Query: 245 QLASLQSERMVDKTSFEA 262
L Q +++VDKT A
Sbjct: 123 NLKDTQLQQIVDKTIINA 140
>pdb|3LL8|B Chain B, Crystal Structure Of Calcineurin In Complex With Akap79
Peptide
pdb|3LL8|D Chain D, Crystal Structure Of Calcineurin In Complex With Akap79
Peptide
Length = 155
Score = 27.7 bits (60), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 39/78 (50%), Gaps = 1/78 (1%)
Query: 185 TGGQGDMDWLQMVQPVIQERIERYSKSEIRFNLMAVIKNRKELYTAELKEFQRKRERILQ 244
T G G++D+ + ++ V Q ++ + ++RF + K+ Y + + FQ + +
Sbjct: 49 TDGNGEVDFKEFIEGVSQFSVKGDKEQKLRFAF-RIYDMDKDGYISNGELFQVLKMMVGN 107
Query: 245 QLASLQSERMVDKTSFEA 262
L Q +++VDKT A
Sbjct: 108 NLKDTQLQQIVDKTIINA 125
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,251,651
Number of Sequences: 62578
Number of extensions: 364598
Number of successful extensions: 987
Number of sequences better than 100.0: 32
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 947
Number of HSP's gapped (non-prelim): 32
length of query: 334
length of database: 14,973,337
effective HSP length: 99
effective length of query: 235
effective length of database: 8,778,115
effective search space: 2062857025
effective search space used: 2062857025
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)