Query 019907
Match_columns 334
No_of_seqs 204 out of 671
Neff 5.9
Searched_HMMs 46136
Date Fri Mar 29 05:29:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019907.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019907hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2778 Ubiquitin C-terminal h 100.0 1E-102 3E-107 726.5 24.0 312 1-331 1-316 (328)
2 PF01088 Peptidase_C12: Ubiqui 100.0 4.1E-73 9E-78 521.4 13.9 201 2-208 1-214 (214)
3 KOG1415 Ubiquitin C-terminal h 100.0 7E-69 1.5E-73 479.8 18.1 210 1-222 3-221 (222)
4 PF07888 CALCOCO1: Calcium bin 69.3 63 0.0014 34.3 11.7 73 152-245 86-158 (546)
5 PHA02744 hypothetical protein; 54.0 7.8 0.00017 31.3 1.5 12 154-165 5-16 (88)
6 KOG1103 Predicted coiled-coil 22.5 2E+02 0.0043 29.2 5.8 49 270-318 144-206 (561)
7 PF09726 Macoilin: Transmembra 19.9 1E+03 0.022 26.2 11.1 52 266-317 546-603 (697)
8 CHL00044 rpl16 ribosomal prote 19.2 94 0.002 26.9 2.5 23 153-175 88-110 (135)
9 PHA00447 lysozyme 19.1 97 0.0021 26.8 2.6 20 152-173 41-60 (142)
10 KOG3926 F-box proteins [Amino 19.0 90 0.0019 30.6 2.5 21 295-318 91-111 (332)
No 1
>KOG2778 consensus Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-102 Score=726.45 Aligned_cols=312 Identities=67% Similarity=1.085 Sum_probs=279.0
Q ss_pred CccccccCCHHHHHHHHHHcCCCCceEEEeecCChhhhhccCCcceeEEeeecCCCCccccccccCCCCCcccchhhhhh
Q 019907 1 MSWCTIESDPGVFTELIQQMQVKGVQVEELYSLDLDSLNNLRPVYGLIFLFKWRPGEKDDRVVIKDPNPNLFFASQVINN 80 (334)
Q Consensus 1 m~W~pLESdP~VFt~l~~~lGv~~~~f~DVyslD~~~L~~~~Pv~alIfLFp~~~~~~~~~~~~~~~~~~v~fakQtI~N 80 (334)
|+||+|||||||||+|++.|||+|+||+||||||.+.+..++|||||||||+|.+++++.+....+.-++||||||||+|
T Consensus 1 ~~W~~iESDPGvFTeli~~fgv~gvQVEElysLd~~~~~~~~piyGlIFLFKW~~ed~~~g~v~~D~~~niFFA~QvInN 80 (328)
T KOG2778|consen 1 MSWCLIESDPGVFTELIEGFGVKGVQVEELYSLDSDSLRPLRPIYGLIFLFKWIEEDKPAGSVIDDSVSNIFFAKQVINN 80 (328)
T ss_pred CCceeeccCCcHHHHHHHhcCCCceeEeeeeccCcchhccCCCceeEEEEEEeccCCCCCcccccccccchhhhhhhccc
Confidence 89999999999999999999999999999999999999999999999999999987666665555555789999999999
Q ss_pred hhHHHHHHHhhhCCC--CCCCCcchHHHHHHhcCCChhhHHhhhcCCHHHHHHHHhcCCCCCCCccccccCC--CCCCcc
Q 019907 81 ACATQAILSILLNCP--DIDIGPELSKLKEFTKNFPPELKGLAINNSDAIRAAHNSFARPEPFVPEEQKAAG--KDDDVY 156 (334)
Q Consensus 81 ACgT~AlLh~l~N~~--~i~lgs~L~~f~~~t~~~~p~~Rg~~L~ns~~i~~~Hns~A~~g~~~~~~~~~~~--~~~~~~ 156 (334)
||||+|||++|+|+. +|+||++|++||+||++|+|+.||.+|+|++.||.+||||||+.++.+++..+.. .++++|
T Consensus 81 ACATqAlLsvLlN~~~~~idLG~tLs~~K~f~k~f~Pe~KGlal~Nse~Ir~~HNSfARp~~~~~~e~~a~~~~~~dd~y 160 (328)
T KOG2778|consen 81 ACATQALLSVLLNCSHEDIDLGPTLSELKEFTKGFDPELKGLALGNSEEIRCAHNSFARPEPFRPEEVDAATSAKEDDVY 160 (328)
T ss_pred HHHHHHHHHHHHcCCccccchhhHHHHHHHHhhcCChhhcccccCCcHHHHHHhccccCCCCcchhhhhcccccccccce
Confidence 999999999999985 6999999999999999999999999999999999999999999996654443322 377899
Q ss_pred eEEEEEeeCCeEEeecCCCCCCcccCCCCCCCCcccHHHHHHHHHHHHHHhccCCCceeEEEEeecCchHHHHHHHHHHH
Q 019907 157 HFISYIPVDGVLYELDGLKEGPISLGPCTGGQGDMDWLQMVQPVIQERIERYSKSEIRFNLMAVIKNRKELYTAELKEFQ 236 (334)
Q Consensus 157 HFIafV~~~G~lyELDGlk~~Pi~~G~~~~~~~~~~~l~~a~~vi~~ri~~~~~~~i~FslmAL~~~~~~~~~~~l~~l~ 236 (334)
|||+|||++|+||||||+|.|||+||+|.. +++|++.|++||++||++|++|+|||||||||+||+ ..+|..++
T Consensus 161 HFVsyvPI~g~lyELDGLke~PI~lg~~~~---eqeW~d~vrpVIqeRi~~ys~gEIrFNLMAvV~dRk---~a~l~~~~ 234 (328)
T KOG2778|consen 161 HFVSYVPINGRLYELDGLKEGPIDLGPCEK---EQEWLDKVRPVIQERIQRYSEGEIRFNLMAVVPDRK---TAELKELQ 234 (328)
T ss_pred eEEEEEeeCCEEEeccCCccCCcccCCCCc---cHhHHHHHHHHHHHHHhhCCcceeEEEEEEEeccch---HHHHHHHH
Confidence 999999999999999999999999999986 269999999999999999999999999999999998 66777777
Q ss_pred HHHHHHHHHHhhhhhhhhccccchHHhhhhHHHHHHhHHHHHHHHHHHHHHHhhhHHHHhcccCCcHHHHHHHHHHHHhc
Q 019907 237 RKRERILQQLASLQSERMVDKTSFEALNKSLSEVNAGIEGATEKILMEEEKFKKWRTENIRRKHNYIPFLFNFLKILAEK 316 (334)
Q Consensus 237 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~E~~k~~~~~~En~rRrhny~pfi~~llk~la~~ 316 (334)
+.++.|++++... ........+++|+.+++.|..|.+|+.+|+.||+||||||.||+++|+|.||++
T Consensus 235 ~~~e~l~~~l~~~-------------~~~~~~~~q~~ia~~~~~i~~e~~K~~~~k~en~rr~hny~pfl~ellk~lae~ 301 (328)
T KOG2778|consen 235 RKREILLQQLQKQ-------------EATEADKEQSEIANLSSHIRPEDEKLKRYKKENIRRKHNYLPFLVELLKILAEE 301 (328)
T ss_pred HHHHHHHHHHHhh-------------hccchhhhhhhhcccccccCcchhHhhhcchhhhhhhhcccHHHHHHHHHHhhh
Confidence 7777777766421 011112257888889999999999999999999999999999999999999999
Q ss_pred CCchHHHHHHHHhhc
Q 019907 317 KQLKPLIEKAKQKTS 331 (334)
Q Consensus 317 g~L~~l~e~a~~~~~ 331 (334)
|+|.+++++||.+..
T Consensus 302 ~~L~~~~~kak~~~~ 316 (328)
T KOG2778|consen 302 GQLAPLVEKAKPKSM 316 (328)
T ss_pred cchhhhhhhhcchhh
Confidence 999999999987654
No 2
>PF01088 Peptidase_C12: Ubiquitin carboxyl-terminal hydrolase, family 1; InterPro: IPR001578 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to the MEROPS peptidase family C12 (ubiquitin C-terminal hydrolase family, clan CA). Families within the CA clan are loosely termed papain-like as protein fold of the peptidase unit resembles that of papain, the type example for clan CA. The type example is the human ubiquitin C-terminal hydrolase UCH-L1. Ubiquitin is highly conserved, commonly found conjugated to proteins in eukaryotic cells, where it may act as a marker for rapid degradation, or it may have a chaperone function in protein assembly []. The ubiquitin is released by cleavage from the bound protein by a protease []. A number of deubiquitinising proteases are known: all are activated by thiol compounds [, ], and inhibited by thiol-blocking agents and ubiquitin aldehyde [, ], and as such have the properties of cysteine proteases []. The deubiquitinsing proteases can be split into 2 size ranges (20-30 kDa and 100-200 kDa, IPR001394 from INTERPRO) []: this family are the 20-30 kDa ppeptides which includes the yeast yuh1. Yeast yuh1 protease is known to be active only against small ubiquitin conjugates, being inactive against conjugated beta-galactosidase []. A mammalian homologue, UCH (ubiquitin conjugate hydrolase), is one of the most abundant proteins in the brain []. Only one conserved cysteine can be identified, along with two conserved histidines. The spacing between the cysteine and the second histidine is thought to be more representative of the cysteine/histidine spacing of a cysteine protease catalytic dyad [].; GO: 0004221 ubiquitin thiolesterase activity, 0006511 ubiquitin-dependent protein catabolic process, 0005622 intracellular; PDB: 1CMX_A 4DM9_A 2ETL_A 3IRT_A 3KW5_A 3IFW_A 2LEN_A 3KVF_A 2WDT_C 2WE6_B ....
Probab=100.00 E-value=4.1e-73 Score=521.35 Aligned_cols=201 Identities=50% Similarity=0.897 Sum_probs=170.7
Q ss_pred ccccccCCHHHHHHHHHHcCCCCceEEEeecCCh-hhhhcc-CCcceeEEeeecCCCCcccc------cc--ccCCCCCc
Q 019907 2 SWCTIESDPGVFTELIQQMQVKGVQVEELYSLDL-DSLNNL-RPVYGLIFLFKWRPGEKDDR------VV--IKDPNPNL 71 (334)
Q Consensus 2 ~W~pLESdP~VFt~l~~~lGv~~~~f~DVyslD~-~~L~~~-~Pv~alIfLFp~~~~~~~~~------~~--~~~~~~~v 71 (334)
+|+||||||+|||+|+++|||++++|+||||||+ ++|+++ +|||||||||||++..+..+ .. ....+++|
T Consensus 1 ~w~pLESnP~vfn~l~~~lGv~~~~f~Dv~sld~~~lL~~ip~Pv~alI~lfp~~~~~~~~~~~~~~~~~~~~~~~~~~v 80 (214)
T PF01088_consen 1 GWIPLESNPEVFNELLRKLGVSGVQFEDVYSLDDPELLAMIPRPVYALIFLFPWTEEYEERRAEEDAKIEEKGQDIPENV 80 (214)
T ss_dssp BS--EESSHHHHHHHHHHTTBTSEEEEEESTSSHHHHHTTSSSSEEEEEEEEE--HHHHHHHHHHHHHHCCHSCTCGTTS
T ss_pred CcccccCCHHHHHHHHHHcCCceeEEEEcccccchHhhhhcCccceeEEEEEecchhhhhhhccccccccccccCCCCCc
Confidence 6999999999999999999999999999999999 559999 99999999999996422111 11 12345689
Q ss_pred ccchhhhhhhhHHHHHHHhhhCCCC---CCCCcchHHHHHHhcCCChhhHHhhhcCCHHHHHHHHhcCCCCCCCcccccc
Q 019907 72 FFASQVINNACATQAILSILLNCPD---IDIGPELSKLKEFTKNFPPELKGLAINNSDAIRAAHNSFARPEPFVPEEQKA 148 (334)
Q Consensus 72 ~fakQtI~NACgT~AlLh~l~N~~~---i~lgs~L~~f~~~t~~~~p~~Rg~~L~ns~~i~~~Hns~A~~g~~~~~~~~~ 148 (334)
||+||||+||||||||||+|+|+++ |.+||.|++|+++|.+|+|++||.+|++++.|+.+||+||++|++.... .
T Consensus 81 ~f~kQti~NACgt~AlLh~l~N~~~~~~i~~gs~L~~f~~~t~~~~p~~Rg~~l~~~~~l~~aH~s~A~~g~t~~~~--~ 158 (214)
T PF01088_consen 81 FFAKQTIGNACGTIALLHALLNNPDRIEIEPGSILDQFKEFTKDLSPEERGKALENSKELRKAHNSFARQGQTEAPD--D 158 (214)
T ss_dssp -EES-SSBTGHHHHHHHHHHHTCCCTTCBBTTSHHHHHHHHHTTSTHHHHHHHHHTHHHHHHHHHHHHCHCSSTS-H---
T ss_pred eEeeecCCchhhHHHHHHHHhcccccccccCCchHHHHHHHHhcCCHHHHHHHHhCcHHHHHHHHHHhccCCcCCCc--c
Confidence 9999999999999999999999986 7889999999999999999999999999999999999999999865321 1
Q ss_pred CCCCCCcceEEEEEeeCCeEEeecCCCCCCcccCCCCCCCCcccHHHHHHHHHHHHHHhc
Q 019907 149 AGKDDDVYHFISYIPVDGVLYELDGLKEGPISLGPCTGGQGDMDWLQMVQPVIQERIERY 208 (334)
Q Consensus 149 ~~~~~~~~HFIafV~~~G~lyELDGlk~~Pi~~G~~~~~~~~~~~l~~a~~vi~~ri~~~ 208 (334)
..+++++||||||||++|+||||||||+|||+||++++ ++|+++|+++||+||++|
T Consensus 159 ~~~~~~~~HFI~fV~~~G~LyELDG~k~~Pi~~G~~~~----~~~l~~a~~vik~~m~~y 214 (214)
T PF01088_consen 159 EADDEVDFHFIAFVPVDGHLYELDGRKSGPIDHGPCSD----EDWLSDARPVIKERMERY 214 (214)
T ss_dssp -TTSCGCEEEEEEEEETTEEEEEETTSSS-EEEEE-BT----TSHHHHHHHHHHHHHHHH
T ss_pred ccCCCCCccEEEEEeECCeEEEcCCCCCCCeEcCcCCC----ccHHHHHHHHHHHHHhcC
Confidence 13567789999999999999999999999999999985 899999999999999997
No 3
>KOG1415 consensus Ubiquitin C-terminal hydrolase UCHL1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7e-69 Score=479.82 Aligned_cols=210 Identities=35% Similarity=0.558 Sum_probs=190.3
Q ss_pred CccccccCCHHHHHHHHHHcCCCC-ceEEEeecCChhhhhcc-CCcceeEEeeecCCCCcccccc----ccCCCCCcccc
Q 019907 1 MSWCTIESDPGVFTELIQQMQVKG-VQVEELYSLDLDSLNNL-RPVYGLIFLFKWRPGEKDDRVV----IKDPNPNLFFA 74 (334)
Q Consensus 1 m~W~pLESdP~VFt~l~~~lGv~~-~~f~DVyslD~~~L~~~-~Pv~alIfLFp~~~~~~~~~~~----~~~~~~~v~fa 74 (334)
+.|.||||||+|+|.|+++|||++ |+|.||||||++.|+++ |||+|||||||+++..+..+.. .++.+++||||
T Consensus 3 ~~w~PLEsNPEv~n~~l~klGv~~~~~~~DVy~ldee~L~~vPrPv~A~lllFP~~e~~e~~~~~~~e~~k~~~~~V~fm 82 (222)
T KOG1415|consen 3 RRWTPLESNPEVLNPFLHKLGVAGEWSVVDVYGLDEESLEFVPRPVKALLLLFPITEKREEFRKEQIEEIKEQSDKVFFM 82 (222)
T ss_pred CccccccCCHHHHHHHHHHhCCCCceEEEEeeecChhhhhhcCccceEEEEEecccchhhHhhhhhHhhhhcCCCceEEE
Confidence 469999999999999999999997 99999999999999999 9999999999999754332211 12335689999
Q ss_pred hhhhhhhhHHHHHHHhhhCCCC---CCCCcchHHHHHHhcCCChhhHHhhhcCCHHHHHHHHhcCCCCCCCccccccCCC
Q 019907 75 SQVINNACATQAILSILLNCPD---IDIGPELSKLKEFTKNFPPELKGLAINNSDAIRAAHNSFARPEPFVPEEQKAAGK 151 (334)
Q Consensus 75 kQtI~NACgT~AlLh~l~N~~~---i~lgs~L~~f~~~t~~~~p~~Rg~~L~ns~~i~~~Hns~A~~g~~~~~~~~~~~~ 151 (334)
||||+|||||+||||+|+|+++ +..||.|++|.+.+..|+|++|+++|+++++|+.+|..+|..|++. .+
T Consensus 83 kQti~NACGTiaLlHslaN~~~r~~l~~Gs~l~~fl~~~~~~s~eeRa~~le~d~~l~~~H~a~a~eGqte-------~~ 155 (222)
T KOG1415|consen 83 KQTIGNACGTIALLHSLANNEDRVKLEDGSFLKKFLEEAEKMSPEERADLLENDEELEAAHEAAAQEGQTE-------AD 155 (222)
T ss_pred eccccchhHHHHHHHHHhccccccccCCchHHHHHHHHhhcCCHHHHHHHhcccHHHHHHHHHHHhcCCCC-------Cc
Confidence 9999999999999999999987 5569999999999999999999999999999999999999999863 24
Q ss_pred CCCcceEEEEEeeCCeEEeecCCCCCCcccCCCCCCCCcccHHHHHHHHHHHHHHhccCCCceeEEEEeec
Q 019907 152 DDDVYHFISYIPVDGVLYELDGLKEGPISLGPCTGGQGDMDWLQMVQPVIQERIERYSKSEIRFNLMAVIK 222 (334)
Q Consensus 152 ~~~~~HFIafV~~~G~lyELDGlk~~Pi~~G~~~~~~~~~~~l~~a~~vi~~ri~~~~~~~i~FslmAL~~ 222 (334)
+++++||||||.+||+|||||||++|||.||++++ +.++.+|.+||+++|++ .+++++||+|||++
T Consensus 156 ~~vd~HFI~~v~~~G~lYELDgR~~fPi~hG~ts~----~tl~kda~~v~k~~~~~-~~nel~Fs~iAl~~ 221 (222)
T KOG1415|consen 156 EDVDLHFICFVNKNGHLYELDGRKPFPINHGPTSD----DTLLKDAAKVCKEFIER-NPNELRFSAIALTK 221 (222)
T ss_pred cccceEEEEEEccCCeEEEecCCcCCCccCCCCch----HHHHHHHHHHHHHHHHc-CCCccceEEEEecC
Confidence 56789999999999999999999999999999987 78999999999999999 57889999999986
No 4
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=69.26 E-value=63 Score=34.31 Aligned_cols=73 Identities=22% Similarity=0.505 Sum_probs=38.5
Q ss_pred CCCcceEEEEEeeCCeEEeecCCCCCCcccCCCCCCCCcccHHHHHHHHHHHHHHhccCCCceeEEEEeecCchHHHHHH
Q 019907 152 DDDVYHFISYIPVDGVLYELDGLKEGPISLGPCTGGQGDMDWLQMVQPVIQERIERYSKSEIRFNLMAVIKNRKELYTAE 231 (334)
Q Consensus 152 ~~~~~HFIafV~~~G~lyELDGlk~~Pi~~G~~~~~~~~~~~l~~a~~vi~~ri~~~~~~~i~FslmAL~~~~~~~~~~~ 231 (334)
++.-|.| |||-.+|.|. | ...|...++..+ .+.++. +.. ..+.. -++-|++ +...++.+
T Consensus 86 ~~e~Yqf-cYv~~~g~V~---G-~S~pFqf~~~~p---~eeLvt-----le~---e~~~~----DmLvV~~-ka~~lQ~q 144 (546)
T PF07888_consen 86 DDEFYQF-CYVDQKGEVR---G-ASTPFQFRAPKP---LEELVT-----LED---EDGNS----DMLVVTT-KAQLLQNQ 144 (546)
T ss_pred CCCeEEE-EEECCCccEE---E-ecCCcccCCCCc---ccccee-----ecc---cCCCc----ceEEEeh-hHHHHHHH
Confidence 3456888 9999999875 3 345666665544 122321 110 11112 2333333 34556777
Q ss_pred HHHHHHHHHHHHHH
Q 019907 232 LKEFQRKRERILQQ 245 (334)
Q Consensus 232 l~~l~~~~~~l~~~ 245 (334)
++..++.++.|...
T Consensus 145 lE~~qkE~eeL~~~ 158 (546)
T PF07888_consen 145 LEECQKEKEELLKE 158 (546)
T ss_pred HHHHHHHHHHHHHH
Confidence 77666555555443
No 5
>PHA02744 hypothetical protein; Provisional
Probab=53.95 E-value=7.8 Score=31.30 Aligned_cols=12 Identities=33% Similarity=0.791 Sum_probs=10.2
Q ss_pred CcceEEEEEeeC
Q 019907 154 DVYHFISYIPVD 165 (334)
Q Consensus 154 ~~~HFIafV~~~ 165 (334)
.-||||||||..
T Consensus 5 ~~~~y~CiVPkE 16 (88)
T PHA02744 5 GKYHYICIAPKE 16 (88)
T ss_pred CceeEEEEecHH
Confidence 459999999975
No 6
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=22.51 E-value=2e+02 Score=29.20 Aligned_cols=49 Identities=24% Similarity=0.306 Sum_probs=27.0
Q ss_pred HHHhHHHHHHHHHHHHHHHh---------hhHHHHhcccCCcHHHHH-----HHHHHHHhcCC
Q 019907 270 VNAGIEGATEKILMEEEKFK---------KWRTENIRRKHNYIPFLF-----NFLKILAEKKQ 318 (334)
Q Consensus 270 ~~~~i~~~~~~i~~E~~k~~---------~~~~En~rRrhny~pfi~-----~llk~la~~g~ 318 (334)
++.+-.+++++|+-|.+..+ .-..|+.+.||.-+.... ..+-.+|+.|+
T Consensus 144 LEKEReqL~QQiEFe~~e~kK~E~~k~Kl~~qLeeEk~RHeqis~mLilEcKka~~KaaEegq 206 (561)
T KOG1103|consen 144 LEKEREQLQQQIEFEIEEKKKAEIAKDKLEMQLEEEKKRHEQISLMLILECKKALLKAAEEGQ 206 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 44555566666655544222 235678899998665432 22334456554
No 7
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=19.87 E-value=1e+03 Score=26.17 Aligned_cols=52 Identities=13% Similarity=0.235 Sum_probs=29.9
Q ss_pred hHHHHHHhHHHHHHHHHHHHHHHhhhHHHHh-cc-----cCCcHHHHHHHHHHHHhcC
Q 019907 266 SLSEVNAGIEGATEKILMEEEKFKKWRTENI-RR-----KHNYIPFLFNFLKILAEKK 317 (334)
Q Consensus 266 ~~~~~~~~i~~~~~~i~~E~~k~~~~~~En~-rR-----rhny~pfi~~llk~la~~g 317 (334)
-..+++.|+.+|+..+..-++....+..|.. .| -+.=.-.++..|..|-+|.
T Consensus 546 r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~~~e~~~~~e~L~~aL~amqdk~ 603 (697)
T PF09726_consen 546 RRRQLESELKKLRRELKQKEEQIRELESELQELRKYEKESEKDTEVLMSALSAMQDKN 603 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Confidence 3345677777777777655555555555541 12 2334566666676666554
No 8
>CHL00044 rpl16 ribosomal protein L16
Probab=19.19 E-value=94 Score=26.88 Aligned_cols=23 Identities=17% Similarity=0.440 Sum_probs=19.9
Q ss_pred CCcceEEEEEeeCCeEEeecCCC
Q 019907 153 DDVYHFISYIPVDGVLYELDGLK 175 (334)
Q Consensus 153 ~~~~HFIafV~~~G~lyELDGlk 175 (334)
....|++|.|+.+.-|+|++|..
T Consensus 88 G~~~~~va~V~~G~ilfEi~g~~ 110 (135)
T CHL00044 88 GSPEYWVAVVKPGRILYEMGGVS 110 (135)
T ss_pred CCccEEEEEECCCcEEEEEeCCC
Confidence 34689999999999999999843
No 9
>PHA00447 lysozyme
Probab=19.13 E-value=97 Score=26.79 Aligned_cols=20 Identities=45% Similarity=0.469 Sum_probs=15.7
Q ss_pred CCCcceEEEEEeeCCeEEeecC
Q 019907 152 DDDVYHFISYIPVDGVLYELDG 173 (334)
Q Consensus 152 ~~~~~HFIafV~~~G~lyELDG 173 (334)
.|..|||+ |-.||.|||.-|
T Consensus 41 ~dIgYhf~--I~~dG~I~eGR~ 60 (142)
T PHA00447 41 LDVGYHFI--IRRDGTVEEGRP 60 (142)
T ss_pred CCcCeEEE--ECCCCEEEECCC
Confidence 35789995 688999999554
No 10
>KOG3926 consensus F-box proteins [Amino acid transport and metabolism]
Probab=18.97 E-value=90 Score=30.58 Aligned_cols=21 Identities=29% Similarity=0.629 Sum_probs=16.9
Q ss_pred HhcccCCcHHHHHHHHHHHHhcCC
Q 019907 295 NIRRKHNYIPFLFNFLKILAEKKQ 318 (334)
Q Consensus 295 n~rRrhny~pfi~~llk~la~~g~ 318 (334)
+.+||+|| |+.+|..+|++|.
T Consensus 91 ~D~rrFny---ickllqliak~ql 111 (332)
T KOG3926|consen 91 RDRRRFNY---ICKLLQLIAKSQL 111 (332)
T ss_pred HHHHHHHH---HHHHHHHHHHccC
Confidence 57899998 6788888888873
Done!