Query 019908
Match_columns 334
No_of_seqs 314 out of 2355
Neff 7.9
Searched_HMMs 46136
Date Fri Mar 29 05:29:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019908.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019908hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0484 DnaJ DnaJ-class molecu 100.0 4.1E-86 8.9E-91 618.2 32.1 314 9-333 1-334 (371)
2 PTZ00037 DnaJ_C chaperone prot 100.0 6.5E-80 1.4E-84 596.5 31.6 316 5-332 21-347 (421)
3 PRK14296 chaperone protein Dna 100.0 1.8E-76 3.8E-81 567.3 32.6 310 11-332 3-344 (372)
4 PRK14288 chaperone protein Dna 100.0 4.6E-76 1E-80 564.2 30.6 310 11-333 2-329 (369)
5 PRK14298 chaperone protein Dna 100.0 1.4E-74 3E-79 555.0 31.8 314 9-333 2-335 (377)
6 PRK14286 chaperone protein Dna 100.0 1.3E-74 2.9E-79 554.7 31.4 315 10-333 2-341 (372)
7 PRK14287 chaperone protein Dna 100.0 4.1E-74 9E-79 551.1 31.7 312 11-332 3-331 (371)
8 PRK14276 chaperone protein Dna 100.0 4.9E-74 1.1E-78 552.6 31.5 312 11-332 3-339 (380)
9 PRK14277 chaperone protein Dna 100.0 6.9E-74 1.5E-78 552.6 31.8 318 9-333 2-349 (386)
10 PRK14280 chaperone protein Dna 100.0 1.5E-73 3.2E-78 548.5 31.8 312 11-332 3-336 (376)
11 PRK14278 chaperone protein Dna 100.0 3.5E-73 7.5E-78 545.9 32.3 313 12-332 3-333 (378)
12 PRK14282 chaperone protein Dna 100.0 4.4E-73 9.6E-78 544.3 32.9 316 10-333 2-347 (369)
13 KOG0712 Molecular chaperone (D 100.0 8.7E-74 1.9E-78 528.3 23.7 313 10-333 2-324 (337)
14 PRK14297 chaperone protein Dna 100.0 1.6E-72 3.6E-77 542.3 32.2 314 11-332 3-341 (380)
15 PRK14285 chaperone protein Dna 100.0 1.3E-72 2.7E-77 539.7 31.1 310 11-333 2-337 (365)
16 PRK14279 chaperone protein Dna 100.0 4.3E-72 9.4E-77 540.3 31.3 311 9-333 6-362 (392)
17 PRK14281 chaperone protein Dna 100.0 5.4E-72 1.2E-76 540.8 31.7 316 12-333 3-356 (397)
18 PRK14284 chaperone protein Dna 100.0 7.9E-72 1.7E-76 539.1 30.7 312 12-332 1-349 (391)
19 PRK14301 chaperone protein Dna 100.0 2.1E-71 4.6E-76 532.7 30.5 309 11-332 3-333 (373)
20 PRK14295 chaperone protein Dna 100.0 7.8E-71 1.7E-75 531.1 32.0 308 10-333 7-356 (389)
21 PRK14294 chaperone protein Dna 100.0 4.4E-71 9.5E-76 530.0 30.0 311 10-332 2-333 (366)
22 TIGR02349 DnaJ_bact chaperone 100.0 6.5E-71 1.4E-75 527.7 30.9 312 13-332 1-336 (354)
23 PRK10767 chaperone protein Dna 100.0 1.7E-70 3.8E-75 527.3 31.4 308 10-332 2-331 (371)
24 PRK14291 chaperone protein Dna 100.0 2.6E-70 5.6E-75 527.1 31.4 313 11-333 2-346 (382)
25 PRK14290 chaperone protein Dna 100.0 3.8E-70 8.3E-75 523.3 32.1 313 12-333 3-340 (365)
26 PRK14300 chaperone protein Dna 100.0 5.3E-70 1.2E-74 523.2 30.9 312 12-333 3-336 (372)
27 PRK14283 chaperone protein Dna 100.0 2E-69 4.3E-74 520.6 31.3 310 9-332 2-339 (378)
28 PRK14289 chaperone protein Dna 100.0 7.1E-69 1.5E-73 518.3 31.2 318 9-332 2-347 (386)
29 PRK14293 chaperone protein Dna 100.0 5.4E-69 1.2E-73 516.9 29.5 316 11-332 2-337 (374)
30 PRK14292 chaperone protein Dna 100.0 1.3E-68 2.8E-73 514.3 30.9 312 12-332 2-331 (371)
31 PRK14299 chaperone protein Dna 100.0 2.7E-53 5.9E-58 395.2 22.9 240 11-333 3-270 (291)
32 PRK10266 curved DNA-binding pr 100.0 2.2E-51 4.7E-56 385.2 24.7 254 11-332 3-276 (306)
33 KOG0713 Molecular chaperone (D 100.0 5.4E-42 1.2E-46 313.2 10.4 295 8-333 12-323 (336)
34 KOG0715 Molecular chaperone (D 100.0 3.4E-40 7.4E-45 304.9 12.0 242 12-282 43-288 (288)
35 TIGR03835 termin_org_DnaJ term 100.0 1.4E-36 3.1E-41 301.6 21.1 111 216-330 693-812 (871)
36 KOG0714 Molecular chaperone (D 99.8 1.4E-20 2.9E-25 174.9 12.3 231 11-302 2-284 (306)
37 COG0484 DnaJ DnaJ-class molecu 99.8 5.6E-21 1.2E-25 179.8 8.6 237 3-275 13-346 (371)
38 KOG0718 Molecular chaperone (D 99.8 2.1E-20 4.6E-25 176.6 4.9 88 7-94 4-99 (546)
39 KOG0716 Molecular chaperone (D 99.8 2.2E-19 4.7E-24 160.0 5.1 70 10-79 29-102 (279)
40 PTZ00341 Ring-infected erythro 99.8 2.4E-19 5.2E-24 183.0 5.4 73 8-80 569-644 (1136)
41 PHA03102 Small T antigen; Revi 99.8 5.3E-19 1.1E-23 147.9 4.5 86 10-101 3-90 (153)
42 PRK10767 chaperone protein Dna 99.7 7.2E-18 1.6E-22 162.5 11.7 131 132-276 147-345 (371)
43 KOG0691 Molecular chaperone (D 99.7 5.4E-19 1.2E-23 162.6 3.4 88 10-102 3-94 (296)
44 PRK14288 chaperone protein Dna 99.7 9.6E-18 2.1E-22 161.3 9.7 130 131-275 144-341 (369)
45 KOG0717 Molecular chaperone (D 99.7 3.9E-18 8.4E-23 161.4 4.7 71 8-78 4-79 (508)
46 PRK14279 chaperone protein Dna 99.7 2E-17 4.3E-22 160.3 9.0 131 131-275 177-374 (392)
47 KOG0624 dsRNA-activated protei 99.7 1.2E-17 2.6E-22 153.6 6.1 70 9-79 391-467 (504)
48 COG2214 CbpA DnaJ-class molecu 99.7 7.7E-17 1.7E-21 143.3 11.0 67 8-74 2-73 (237)
49 PRK14300 chaperone protein Dna 99.7 7.9E-17 1.7E-21 155.2 11.1 172 90-275 94-348 (372)
50 PF00226 DnaJ: DnaJ domain; I 99.7 1.2E-17 2.7E-22 120.5 3.2 59 13-71 1-64 (64)
51 KOG0719 Molecular chaperone (D 99.7 5E-17 1.1E-21 141.6 4.1 66 10-75 12-83 (264)
52 PRK14286 chaperone protein Dna 99.6 1.6E-15 3.4E-20 146.2 11.6 131 131-275 154-353 (372)
53 PRK14285 chaperone protein Dna 99.6 1.9E-15 4E-20 145.3 11.8 131 131-275 150-349 (365)
54 smart00271 DnaJ DnaJ molecular 99.6 7.4E-16 1.6E-20 109.6 5.6 55 12-66 1-60 (60)
55 PRK14277 chaperone protein Dna 99.6 3.5E-15 7.6E-20 144.5 10.7 170 91-275 106-361 (386)
56 KOG0721 Molecular chaperone (D 99.6 5.2E-16 1.1E-20 134.2 4.3 71 7-77 94-168 (230)
57 PRK14284 chaperone protein Dna 99.6 9.6E-15 2.1E-19 141.7 11.8 132 131-276 162-363 (391)
58 PRK14282 chaperone protein Dna 99.6 3.3E-15 7.1E-20 143.9 8.5 131 131-275 156-359 (369)
59 cd06257 DnaJ DnaJ domain or J- 99.6 3E-15 6.5E-20 104.5 5.9 51 13-63 1-55 (55)
60 PRK14301 chaperone protein Dna 99.6 7.8E-15 1.7E-19 141.4 9.5 130 132-275 149-346 (373)
61 PRK14281 chaperone protein Dna 99.6 1.5E-14 3.3E-19 140.5 11.3 129 132-275 168-368 (397)
62 PRK14298 chaperone protein Dna 99.5 8.2E-15 1.8E-19 141.4 7.3 132 131-276 145-348 (377)
63 PRK14297 chaperone protein Dna 99.5 3.3E-14 7.2E-19 137.5 11.2 130 132-275 153-354 (380)
64 PRK14289 chaperone protein Dna 99.5 2.9E-14 6.2E-19 138.2 10.4 129 132-274 159-359 (386)
65 PRK14290 chaperone protein Dna 99.5 1.4E-14 3.1E-19 139.3 7.6 130 132-276 154-353 (365)
66 PRK14294 chaperone protein Dna 99.5 1.3E-14 2.8E-19 139.6 7.2 130 132-276 149-347 (366)
67 KOG0550 Molecular chaperone (D 99.5 6.5E-15 1.4E-19 138.4 4.9 88 8-98 369-461 (486)
68 PTZ00100 DnaJ chaperone protei 99.5 1.5E-14 3.3E-19 115.0 5.7 57 6-62 59-115 (116)
69 PF00684 DnaJ_CXXCXGXG: DnaJ c 99.5 4.6E-14 1E-18 102.3 7.1 65 148-214 1-66 (66)
70 PRK14293 chaperone protein Dna 99.5 4.2E-14 9.1E-19 136.5 8.3 132 131-276 147-351 (374)
71 PRK14295 chaperone protein Dna 99.5 3.7E-14 8E-19 137.4 7.9 131 131-275 170-368 (389)
72 PRK14287 chaperone protein Dna 99.5 4.1E-14 8.9E-19 136.3 7.3 132 131-276 142-345 (371)
73 PRK14278 chaperone protein Dna 99.5 5.7E-14 1.2E-18 135.7 8.3 131 131-275 143-346 (378)
74 PRK14296 chaperone protein Dna 99.5 7.4E-14 1.6E-18 134.5 7.7 131 131-275 153-357 (372)
75 PRK14291 chaperone protein Dna 99.5 2E-13 4.4E-18 132.1 10.4 117 132-263 161-346 (382)
76 PRK14276 chaperone protein Dna 99.5 7.5E-14 1.6E-18 135.0 7.2 131 131-275 150-352 (380)
77 TIGR02349 DnaJ_bact chaperone 99.5 8.4E-14 1.8E-18 133.6 7.1 130 131-274 147-348 (354)
78 PRK14280 chaperone protein Dna 99.5 1.1E-13 2.5E-18 133.5 7.9 131 131-275 147-349 (376)
79 PRK05014 hscB co-chaperone Hsc 99.4 1.4E-13 3.1E-18 118.3 5.5 61 12-72 1-72 (171)
80 PRK01356 hscB co-chaperone Hsc 99.4 1.3E-13 2.8E-18 118.0 5.1 61 12-72 2-71 (166)
81 PTZ00037 DnaJ_C chaperone prot 99.4 3.1E-13 6.7E-18 131.7 7.8 132 131-275 154-362 (421)
82 KOG0722 Molecular chaperone (D 99.4 8.3E-14 1.8E-18 122.9 2.5 63 11-73 32-97 (329)
83 PF01556 CTDII: DnaJ C termina 99.4 5.9E-13 1.3E-17 100.6 6.5 61 271-333 1-72 (81)
84 PRK14292 chaperone protein Dna 99.4 4.8E-13 1E-17 129.1 6.3 131 131-275 143-344 (371)
85 PRK03578 hscB co-chaperone Hsc 99.4 6.6E-13 1.4E-17 114.6 6.0 63 10-72 4-77 (176)
86 PRK00294 hscB co-chaperone Hsc 99.4 7.9E-13 1.7E-17 113.6 5.9 63 10-72 2-75 (173)
87 PHA02624 large T antigen; Prov 99.3 6.6E-13 1.4E-17 132.1 4.2 63 8-70 7-71 (647)
88 PRK14283 chaperone protein Dna 99.3 3.2E-12 6.8E-17 123.7 8.5 131 131-275 150-352 (378)
89 KOG0720 Molecular chaperone (D 99.3 9.9E-13 2.2E-17 125.0 4.0 67 6-72 229-298 (490)
90 PRK09430 djlA Dna-J like membr 99.2 8.6E-12 1.9E-16 114.9 4.7 56 8-63 196-262 (267)
91 COG5407 SEC63 Preprotein trans 99.1 7.3E-11 1.6E-15 111.9 3.0 68 10-77 96-172 (610)
92 PRK01773 hscB co-chaperone Hsc 98.9 1.8E-09 3.9E-14 92.9 5.1 61 12-72 2-73 (173)
93 PF01556 CTDII: DnaJ C termina 98.9 6.2E-10 1.3E-14 84.1 1.9 50 220-269 27-78 (81)
94 PLN03165 chaperone protein dna 98.9 5.3E-09 1.2E-13 82.8 6.9 62 144-219 40-101 (111)
95 TIGR00714 hscB Fe-S protein as 98.9 2.8E-09 6.2E-14 90.5 5.2 49 24-72 3-60 (157)
96 COG5269 ZUO1 Ribosome-associat 98.8 2.9E-09 6.2E-14 95.2 2.7 70 5-74 36-114 (379)
97 KOG1150 Predicted molecular ch 98.7 5.7E-09 1.2E-13 89.4 3.2 61 10-70 51-116 (250)
98 PRK14299 chaperone protein Dna 98.7 7.5E-09 1.6E-13 96.8 4.1 55 221-275 228-282 (291)
99 KOG0723 Molecular chaperone (D 98.7 2.4E-08 5.2E-13 77.1 5.2 62 3-64 47-108 (112)
100 KOG0712 Molecular chaperone (D 98.6 1.7E-07 3.6E-12 87.9 8.3 43 221-263 280-324 (337)
101 PRK10266 curved DNA-binding pr 98.5 8.2E-08 1.8E-12 90.4 4.3 53 221-274 236-288 (306)
102 KOG1789 Endocytosis protein RM 98.5 1.1E-07 2.4E-12 98.3 5.2 58 5-62 1274-1336(2235)
103 TIGR02642 phage_xxxx uncharact 98.4 5.1E-07 1.1E-11 78.1 5.0 50 189-239 100-149 (186)
104 KOG0568 Molecular chaperone (D 98.3 3.6E-07 7.8E-12 80.2 3.8 53 11-63 46-102 (342)
105 COG1107 Archaea-specific RecJ- 98.2 6.4E-07 1.4E-11 88.1 2.4 72 146-218 3-82 (715)
106 PF00684 DnaJ_CXXCXGXG: DnaJ c 98.2 5.8E-07 1.2E-11 65.0 1.4 52 133-198 4-66 (66)
107 TIGR03835 termin_org_DnaJ term 98.1 5.6E-06 1.2E-10 84.4 5.8 85 12-100 2-89 (871)
108 KOG2813 Predicted molecular ch 97.5 0.00014 3.1E-09 66.9 4.6 61 145-226 198-278 (406)
109 COG1107 Archaea-specific RecJ- 97.4 0.00017 3.6E-09 71.5 4.6 56 133-202 8-82 (715)
110 PLN03165 chaperone protein dna 97.4 0.00012 2.6E-09 58.2 2.9 49 131-202 45-100 (111)
111 KOG2813 Predicted molecular ch 96.9 0.00043 9.4E-09 63.8 1.9 75 131-217 170-258 (406)
112 KOG3192 Mitochondrial J-type c 96.9 0.00068 1.5E-08 56.3 2.5 65 8-72 4-79 (168)
113 TIGR02642 phage_xxxx uncharact 96.7 0.001 2.2E-08 57.7 2.8 32 144-175 98-129 (186)
114 COG1076 DjlA DnaJ-domain-conta 96.4 0.0016 3.5E-08 56.3 2.0 52 10-61 111-173 (174)
115 PF03656 Pam16: Pam16; InterP 95.8 0.015 3.3E-07 47.4 4.8 56 9-64 55-110 (127)
116 COG1076 DjlA DnaJ-domain-conta 94.8 0.0095 2.1E-07 51.5 0.6 60 13-72 2-72 (174)
117 KOG0431 Auxilin-like protein a 94.2 0.051 1.1E-06 54.0 4.1 44 19-62 395-449 (453)
118 cd03031 GRX_GRX_like Glutaredo 92.4 0.13 2.8E-06 43.2 3.2 25 146-175 100-124 (147)
119 PF13446 RPT: A repeated domai 91.5 0.21 4.6E-06 35.2 3.1 47 10-63 3-49 (62)
120 KOG2824 Glutaredoxin-related p 91.5 0.17 3.8E-06 46.2 3.2 51 146-211 230-280 (281)
121 PF11833 DUF3353: Protein of u 90.1 0.57 1.2E-05 41.2 5.1 38 21-62 1-38 (194)
122 KOG0715 Molecular chaperone (D 88.5 0.18 3.9E-06 47.1 0.8 59 129-201 166-230 (288)
123 KOG2824 Glutaredoxin-related p 88.2 0.49 1.1E-05 43.4 3.4 40 162-217 230-275 (281)
124 smart00709 Zpr1 Duplicated dom 86.5 4.6 9.9E-05 34.4 8.1 20 221-240 81-100 (160)
125 cd03031 GRX_GRX_like Glutaredo 83.5 1.3 2.8E-05 37.2 3.4 39 162-216 100-145 (147)
126 TIGR00310 ZPR1_znf ZPR1 zinc f 81.4 8.2 0.00018 33.9 7.7 20 221-240 80-100 (192)
127 PRK14714 DNA polymerase II lar 81.3 1.6 3.4E-05 48.1 3.8 65 135-220 658-725 (1337)
128 PRK04023 DNA polymerase II lar 81.1 1.6 3.4E-05 46.9 3.7 69 129-220 610-679 (1121)
129 TIGR00630 uvra excinuclease AB 79.4 1.4 3.1E-05 47.7 2.8 13 163-175 738-750 (924)
130 PRK00349 uvrA excinuclease ABC 78.8 1.9 4.1E-05 46.9 3.6 13 163-175 740-752 (943)
131 KOG0724 Zuotin and related mol 78.4 2.2 4.7E-05 40.6 3.5 50 23-72 3-60 (335)
132 TIGR00630 uvra excinuclease AB 74.5 1.5 3.2E-05 47.5 1.3 35 189-223 737-778 (924)
133 COG0178 UvrA Excinuclease ATPa 72.7 4.2 9.1E-05 43.1 4.0 34 162-199 731-764 (935)
134 TIGR00340 zpr1_rel ZPR1-relate 71.0 14 0.00031 31.4 6.3 20 221-240 78-98 (163)
135 PRK00635 excinuclease ABC subu 67.7 3.6 7.7E-05 47.6 2.4 33 163-199 1609-1641(1809)
136 PF07739 TipAS: TipAS antibiot 64.8 8.5 0.00018 30.2 3.5 53 18-75 50-104 (118)
137 PRK00349 uvrA excinuclease ABC 63.3 2.9 6.3E-05 45.5 0.7 30 145-174 738-774 (943)
138 PF03367 zf-ZPR1: ZPR1 zinc-fi 61.8 13 0.00029 31.5 4.3 37 163-199 3-41 (161)
139 PF07709 SRR: Seven Residue Re 60.0 6.2 0.00013 19.2 1.2 13 50-62 2-14 (14)
140 PF07092 DUF1356: Protein of u 59.6 5.1 0.00011 36.2 1.4 16 145-160 38-53 (238)
141 PRK00635 excinuclease ABC subu 59.5 4.3 9.4E-05 47.0 1.2 31 145-175 1607-1644(1809)
142 PF03833 PolC_DP2: DNA polymer 57.6 3.4 7.4E-05 43.7 0.0 52 146-219 656-707 (900)
143 PRK12380 hydrogenase nickel in 57.5 9.3 0.0002 30.5 2.5 40 134-173 58-98 (113)
144 KOG3442 Uncharacterized conser 57.3 17 0.00036 29.4 3.8 53 10-62 57-109 (132)
145 COG0178 UvrA Excinuclease ATPa 55.6 4.6 0.0001 42.8 0.6 38 141-178 725-770 (935)
146 COG1198 PriA Primosomal protei 55.1 14 0.00031 39.0 4.0 51 144-213 434-484 (730)
147 PF12434 Malate_DH: Malate deh 53.0 16 0.00034 21.3 2.2 16 27-42 11-26 (28)
148 PF03589 Antiterm: Antitermina 52.4 2.7 5.9E-05 32.5 -1.3 35 163-199 7-43 (95)
149 TIGR03655 anti_R_Lar restricti 52.2 25 0.00055 23.8 3.7 12 163-174 3-14 (53)
150 PRK14559 putative protein seri 50.8 11 0.00023 39.4 2.3 49 146-213 2-50 (645)
151 PRK00564 hypA hydrogenase nick 50.7 40 0.00086 27.0 5.1 31 143-173 69-100 (117)
152 PF14687 DUF4460: Domain of un 50.6 29 0.00063 27.6 4.3 41 22-62 4-52 (112)
153 TIGR00757 RNaseEG ribonuclease 50.2 7.2 0.00016 38.4 0.9 26 177-202 379-404 (414)
154 PRK00464 nrdR transcriptional 49.6 20 0.00043 30.3 3.3 35 163-197 2-37 (154)
155 TIGR00100 hypA hydrogenase nic 49.0 16 0.00034 29.2 2.5 29 144-172 69-97 (115)
156 PF14353 CpXC: CpXC protein 47.0 8.3 0.00018 31.2 0.7 14 188-201 38-51 (128)
157 PF13719 zinc_ribbon_5: zinc-r 45.8 8.9 0.00019 24.0 0.5 11 146-156 3-13 (37)
158 PRK14890 putative Zn-ribbon RN 45.8 17 0.00037 25.4 2.0 21 189-213 37-57 (59)
159 PF07092 DUF1356: Protein of u 45.7 12 0.00026 33.9 1.5 12 319-330 200-211 (238)
160 PRK12336 translation initiatio 45.2 1.1E+02 0.0024 27.0 7.5 34 221-254 150-184 (201)
161 PF04246 RseC_MucC: Positive r 45.2 30 0.00065 28.2 3.8 23 219-241 41-63 (135)
162 COG5552 Uncharacterized conser 44.9 74 0.0016 23.3 5.2 35 13-47 4-38 (88)
163 PRK05580 primosome assembly pr 43.9 23 0.00051 37.2 3.6 51 145-214 381-431 (679)
164 PRK12380 hydrogenase nickel in 38.5 41 0.0009 26.7 3.5 6 163-168 72-77 (113)
165 TIGR00100 hypA hydrogenase nic 37.7 46 0.001 26.5 3.6 10 189-198 87-96 (115)
166 cd04036 C2_cPLA2 C2 domain pre 37.2 1.5E+02 0.0033 22.9 6.7 55 254-331 65-119 (119)
167 PRK11712 ribonuclease G; Provi 37.0 12 0.00027 37.6 0.3 26 177-202 391-416 (489)
168 PF01155 HypA: Hydrogenase exp 36.4 17 0.00036 28.9 0.9 32 143-174 68-99 (113)
169 PF01155 HypA: Hydrogenase exp 36.2 21 0.00046 28.3 1.5 26 189-214 71-96 (113)
170 TIGR00595 priA primosomal prot 35.7 35 0.00076 34.6 3.3 53 145-216 213-265 (505)
171 PRK03564 formate dehydrogenase 35.6 30 0.00065 32.7 2.5 30 30-63 38-70 (309)
172 PF12387 Peptidase_C74: Pestiv 34.9 21 0.00046 30.5 1.3 26 146-174 163-188 (200)
173 PF10041 DUF2277: Uncharacteri 34.1 1.3E+02 0.0029 22.2 5.1 40 14-53 5-47 (78)
174 PRK00488 pheS phenylalanyl-tRN 33.3 34 0.00073 32.8 2.5 22 144-173 259-280 (339)
175 PF08792 A2L_zn_ribbon: A2L zi 33.0 45 0.00097 20.4 2.2 11 163-173 5-15 (33)
176 PF14205 Cys_rich_KTR: Cystein 32.9 76 0.0016 21.8 3.5 12 206-217 30-41 (55)
177 PF13453 zf-TFIIB: Transcripti 32.9 42 0.0009 21.3 2.2 8 189-196 20-27 (41)
178 PRK14873 primosome assembly pr 32.4 48 0.001 34.9 3.7 51 145-215 383-433 (665)
179 PF08273 Prim_Zn_Ribbon: Zinc- 32.4 21 0.00045 22.9 0.7 11 146-156 4-14 (40)
180 PF13717 zinc_ribbon_4: zinc-r 32.4 21 0.00046 22.2 0.7 11 146-156 3-13 (36)
181 COG0551 TopA Zn-finger domain 30.7 1.6E+02 0.0034 24.0 5.9 50 161-212 60-109 (140)
182 smart00276 GLECT Galectin. Gal 30.6 73 0.0016 25.5 3.8 40 223-262 2-48 (128)
183 PRK03681 hypA hydrogenase nick 30.5 43 0.00092 26.7 2.3 28 144-171 69-97 (114)
184 PF13248 zf-ribbon_3: zinc-rib 30.0 21 0.00046 20.3 0.4 21 189-211 3-23 (26)
185 PF11023 DUF2614: Protein of u 30.0 26 0.00056 27.8 1.0 26 188-213 69-94 (114)
186 PF08271 TF_Zn_Ribbon: TFIIB z 29.3 33 0.00072 22.0 1.3 9 163-171 2-10 (43)
187 smart00440 ZnF_C2C2 C2C2 Zinc 28.1 1.2E+02 0.0025 19.3 3.7 17 163-179 2-18 (40)
188 PF04967 HTH_10: HTH DNA bindi 27.3 18 0.00039 24.7 -0.3 32 6-37 21-52 (53)
189 COG1530 CafA Ribonucleases G a 26.7 76 0.0017 32.0 3.9 26 177-202 384-409 (487)
190 KOG0315 G-protein beta subunit 25.9 46 0.001 30.6 1.9 32 275-306 19-51 (311)
191 KOG0527 HMG-box transcription 25.8 62 0.0013 30.9 2.9 41 31-72 75-115 (331)
192 COG5216 Uncharacterized conser 25.5 32 0.0007 24.0 0.7 15 124-138 30-44 (67)
193 COG0089 RplW Ribosomal protein 25.1 56 0.0012 25.2 2.0 21 17-37 25-45 (94)
194 PF14354 Lar_restr_allev: Rest 25.1 94 0.002 21.3 3.1 8 189-196 30-37 (61)
195 PRK02935 hypothetical protein; 24.5 44 0.00095 26.3 1.3 26 188-213 70-95 (110)
196 PF09855 DUF2082: Nucleic-acid 23.6 1.6E+02 0.0034 21.0 4.0 9 189-197 37-45 (64)
197 cd00084 HMG-box High Mobility 23.5 57 0.0012 22.1 1.8 43 29-72 11-53 (66)
198 PTZ00087 thrombosponding-relat 23.2 1.1E+02 0.0023 28.4 3.7 14 162-175 240-255 (340)
199 COG1038 PycA Pyruvate carboxyl 23.0 4.8E+02 0.01 28.4 8.7 86 219-313 1015-1105(1149)
200 PF09285 Elong-fact-P_C: Elong 22.9 85 0.0019 21.7 2.4 20 221-240 29-48 (56)
201 PF02736 Myosin_N: Myosin N-te 22.9 1.3E+02 0.0028 19.2 3.1 33 267-302 7-39 (42)
202 cd01388 SOX-TCF_HMG-box SOX-TC 22.8 69 0.0015 22.8 2.1 41 31-72 14-54 (72)
203 PRK03824 hypA hydrogenase nick 22.5 41 0.0009 27.6 0.9 11 144-154 69-79 (135)
204 PRK00762 hypA hydrogenase nick 22.4 90 0.0019 25.2 2.9 20 134-154 58-78 (124)
205 PF09862 DUF2089: Protein of u 22.0 59 0.0013 26.0 1.7 8 164-171 1-8 (113)
206 TIGR02098 MJ0042_CXXC MJ0042 f 21.9 55 0.0012 20.1 1.2 8 189-196 26-33 (38)
207 cd01389 MATA_HMG-box MATA_HMG- 21.8 75 0.0016 22.9 2.1 42 30-72 13-54 (77)
208 cd01390 HMGB-UBF_HMG-box HMGB- 21.7 66 0.0014 22.0 1.8 39 33-72 15-53 (66)
209 PF05741 zf-nanos: Nanos RNA b 21.4 44 0.00096 23.1 0.7 25 141-165 29-53 (55)
210 TIGR00757 RNaseEG ribonuclease 21.2 48 0.001 32.7 1.3 14 162-175 391-404 (414)
211 PF07754 DUF1610: Domain of un 21.1 82 0.0018 17.9 1.7 6 189-194 17-22 (24)
212 PF01096 TFIIS_C: Transcriptio 21.0 1.6E+02 0.0035 18.5 3.3 17 163-179 2-18 (39)
213 PF03811 Zn_Tnp_IS1: InsA N-te 21.0 93 0.002 19.4 2.1 11 145-155 5-15 (36)
214 KOG0005 Ubiquitin-like protein 20.9 84 0.0018 22.1 2.0 20 288-307 2-21 (70)
215 PRK14892 putative transcriptio 20.5 67 0.0014 25.0 1.7 10 143-152 19-28 (99)
216 cd08690 C2_Freud-1 C2 domain f 20.3 2.7E+02 0.0059 23.3 5.5 42 255-297 80-123 (155)
217 TIGR01562 FdhE formate dehydro 20.2 1.9E+02 0.0041 27.3 4.9 10 145-154 184-193 (305)
218 CHL00030 rpl23 ribosomal prote 20.2 82 0.0018 24.2 2.1 21 17-37 23-43 (93)
No 1
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.1e-86 Score=618.22 Aligned_cols=314 Identities=40% Similarity=0.716 Sum_probs=277.5
Q ss_pred CCccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCC-Ch---HHHHHHHHHHhhcCCCcccchhcccChhhhhc-CCC
Q 019908 9 SNNTKYYEILGVSKSATEDELKKAYRKAAMKNHPDKGG-DP---EKFKELGQAYEVLSDPEKRDIYDQYGEDALKE-GMG 83 (334)
Q Consensus 9 ~~~~~~y~iLgv~~~a~~~eik~ayr~la~~~hPd~~~-~~---~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~~-~~~ 83 (334)
+..+|||+||||+++||.+|||+|||+||++||||+|+ ++ ++|++|++||||||||+||++||+||++++++ +++
T Consensus 1 ~~~~dyYeiLGV~k~As~~EIKkAYRkLA~kyHPD~n~g~~~AeeKFKEI~eAYEVLsD~eKRa~YD~fG~~~~~~gg~g 80 (371)
T COG0484 1 MAKRDYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNPGDKEAEEKFKEINEAYEVLSDPEKRAAYDQFGHAGFKAGGFG 80 (371)
T ss_pred CCccchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHhhccCccccccCCcC
Confidence 46789999999999999999999999999999999999 53 89999999999999999999999999999863 322
Q ss_pred CC--CCCC-CcchhhccccCCCCCCCCCCCCCCcccccccEEEeeeeceeeeecCcccccccceeeeCCCCCCCCCccCC
Q 019908 84 GA--GAAH-NPFDIFESFFGGGTFGAGGSSRGRRRKQGEDVVHTLKVSLEDLYNGTTKKLSLSRNILCPKCKGKGSKSGA 160 (334)
Q Consensus 84 ~~--~~~~-~~~d~f~~~Fg~~~~~~~~~~~~~~~~~~~di~~~l~~sl~e~~~G~~~~i~~~~~~~C~~C~G~G~~~~~ 160 (334)
++ +++. ++.|||++|||++++ ++++..+++++.|+.+.++|||+|++.|+++++.+++.+.|++|+|+|...++
T Consensus 81 g~g~~~fgg~~~DIF~~~FgGg~~---~~~~~~~~~rG~Dl~~~l~isleEa~~G~~~~i~~~~~~~C~~C~GsGak~gt 157 (371)
T COG0484 81 GFGFGGFGGDFGDIFEDFFGGGGG---GRRRPNRPRRGADLRYNLEITLEEAVFGVKKEIRVTRSVTCSTCHGSGAKPGT 157 (371)
T ss_pred CCCcCCCCCCHHHHHHHhhcCCCc---ccCCCCCcccCCceEEEEEeEhhhhccCceeeEecceeeECCcCCCCCCCCCC
Confidence 21 1122 588999999974322 22233456789999999999999999999999999999999999999999985
Q ss_pred -cccCCCCCCCcEEEEEEeeccceeeEEEEeCCCCccceEEEccCCCCCccCCCceeEEeEEEEEEeccCccCCcEEEEe
Q 019908 161 -LGKCYGCQGTGMKITTRQIGLGMIQQMQHVCPECRGAGEVISERDKCPQCKANKVTQEKKVLEVHVEKGMQHGQKIAFE 239 (334)
Q Consensus 161 -~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~~~~~~v~Ip~G~~~G~~i~l~ 239 (334)
..+|++|+|+|.+...+++ .+++++++|+.|+|+|+++. ++|++|+|.|++.+.++++|+||+|+.+|++|+++
T Consensus 158 ~~~tC~tC~G~G~v~~~~~~---g~~~~~~~C~~C~G~G~~i~--~pC~~C~G~G~v~~~~~i~V~IPaGv~~g~~ir~~ 232 (371)
T COG0484 158 DPKTCPTCNGSGQVRTVQRT---GFFSFQQTCPTCNGTGKIIK--DPCGKCKGKGRVKKKKSISVNIPAGVDDGDRIRLS 232 (371)
T ss_pred CCCcCCCCCCcCeEEEEEee---eEEEEEEECCCCccceeECC--CCCCCCCCCCeEeeeeEEEEECCCCCccCCEEEEe
Confidence 6789999999999887777 34456799999999999996 99999999999999999999999999999999999
Q ss_pred cCcCCCC-CCCCcCEEEEEEEEeCCCceeecCcEEEEEecCHHHHhCCCeEEEecCCCCeEEEEcCCCceecCCccc---
Q 019908 240 GQADEAP-DTITGDIVFILQLKEHPKFKRKFDDLYVDHTLSLTEALCGFQFALTHLDGRQLLIKSNPGEIIKPGIYF--- 315 (334)
Q Consensus 240 g~G~~~~-~~~~GDL~v~i~v~~~~~f~r~g~dL~~~~~I~l~~al~G~~~~i~tldG~~l~v~i~~g~~i~~g~~~--- 315 (334)
|+|++.+ ++++|||||+|.|++|+.|.|+|+|||++++|++.+|+||+++.||||||+ +.|+||+|++ +|...
T Consensus 233 g~G~~g~~Ggp~GDLyv~i~v~~h~~F~R~g~dL~~~~~Is~~~AalG~~i~vptl~g~-~~l~ip~Gtq--~G~~~rl~ 309 (371)
T COG0484 233 GEGEAGPNGGPAGDLYVFVHVKPHPIFERDGDDLYCEVPISFTEAALGGEIEVPTLDGR-VKLKIPAGTQ--TGEVFRLR 309 (371)
T ss_pred cCcccCCCCCCCccEEEEEEeecCCCeEECCCceEeccccCHHHHhcCCEEEEEecCCC-EEEecCCCCc--cCcEEEEc
Confidence 9999985 667899999999999999999999999999999999999999999999999 9999999853 34322
Q ss_pred -------CCCCCccEEEEEEEEEee
Q 019908 316 -------DNFTSVNLYLHEYCFLWL 333 (334)
Q Consensus 316 -------~~~~~GdL~v~~~V~~p~ 333 (334)
++..+|||||+++|++|-
T Consensus 310 gkG~p~~~~~~~GDl~v~v~v~~P~ 334 (371)
T COG0484 310 GKGMPKLRSGGRGDLYVRVKVETPK 334 (371)
T ss_pred CCCccccCCCCcCCEEEEEEEEcCC
Confidence 345679999999999994
No 2
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=100.00 E-value=6.5e-80 Score=596.54 Aligned_cols=316 Identities=47% Similarity=0.889 Sum_probs=286.0
Q ss_pred CCCCCCccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHhhcCCCcccchhcccChhhhhcCCCC
Q 019908 5 TPRRSNNTKYYEILGVSKSATEDELKKAYRKAAMKNHPDKGGDPEKFKELGQAYEVLSDPEKRDIYDQYGEDALKEGMGG 84 (334)
Q Consensus 5 ~~~~~~~~~~y~iLgv~~~a~~~eik~ayr~la~~~hPd~~~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~~~~~~ 84 (334)
..+.+..+|||++|||+++||.+|||+|||+||++||||+|+++++|++|++||++|+||++|++||+||++++..+.
T Consensus 21 ~~~~~~~~d~Y~vLGV~~~As~~eIKkAYrkla~k~HPDk~~~~e~F~~i~~AYevLsD~~kR~~YD~~G~~~~~~~~-- 98 (421)
T PTZ00037 21 RKREVDNEKLYEVLNLSKDCTTSEIKKAYRKLAIKHHPDKGGDPEKFKEISRAYEVLSDPEKRKIYDEYGEEGLEGGE-- 98 (421)
T ss_pred ccccccchhHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHHhccHHHHHHHhhhcchhcccCC--
Confidence 334566889999999999999999999999999999999999889999999999999999999999999988765321
Q ss_pred CCCCCCcchhhccccCCCCCCCCCCCCCCcccccccEEEeeeeceeeeecCcccccccceeeeCCCCCCCCCccCCcccC
Q 019908 85 AGAAHNPFDIFESFFGGGTFGAGGSSRGRRRKQGEDVVHTLKVSLEDLYNGTTKKLSLSRNILCPKCKGKGSKSGALGKC 164 (334)
Q Consensus 85 ~~~~~~~~d~f~~~Fg~~~~~~~~~~~~~~~~~~~di~~~l~~sl~e~~~G~~~~i~~~~~~~C~~C~G~G~~~~~~~~C 164 (334)
++.+++++|+.|||++. . ..+..++.|+.+.|.+||+|+|+|+++++.+.+.+.|+.|+|+|.......+|
T Consensus 99 --~~~d~~d~f~~~Fggg~-----~--~~~~~rg~di~~~l~vtLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~C 169 (421)
T PTZ00037 99 --QPADASDLFDLIFGGGR-----K--PGGKKRGEDIVSHLKVTLEQIYNGAMRKLAINKDVICANCEGHGGPKDAFVDC 169 (421)
T ss_pred --CCcchhhhHHHhhcccc-----c--cccccCCCCEEEEeeeeHHHHhCCCceEEEeeccccccccCCCCCCCCCCccC
Confidence 22457789999997421 1 12235688999999999999999999999999999999999999877767789
Q ss_pred CCCCCCcEEEEEEeeccceeeEEEEeCCCCccceEEEccCCCCCccCCCceeEEeEEEEEEeccCccCCcEEEEecCcCC
Q 019908 165 YGCQGTGMKITTRQIGLGMIQQMQHVCPECRGAGEVISERDKCPQCKANKVTQEKKVLEVHVEKGMQHGQKIAFEGQADE 244 (334)
Q Consensus 165 ~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~~~~~~v~Ip~G~~~G~~i~l~g~G~~ 244 (334)
+.|+|+|.++..+++|+ |+++++.+|+.|.|+|+++...++|+.|+|.+++.+.++++|.||||+.+|++|+|+|+|++
T Consensus 170 ~~C~G~G~~~~~~~~g~-~~~q~~~~C~~C~G~G~~i~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~dG~~I~~~G~Gd~ 248 (421)
T PTZ00037 170 KLCNGQGIRVQIRQMGS-MIHQTQSTCNSCNGQGKIIPESKKCKNCSGKGVKKTRKILEVNIDKGVPNQHKITFHGEADE 248 (421)
T ss_pred CCCCCCCeEEEEEeecc-eeeEEEEeCCCCCCcceeccccccCCcCCCcceeeeeeEEEEeeCCCCCCCcEEEEecccCC
Confidence 99999999988888888 88888999999999999998789999999999999999999999999999999999999999
Q ss_pred CCCCCCcCEEEEEEEEeCCCceeecCcEEEEEecCHHHHhCCCeEEEecCCCCeEEEEcCCCceecCCccc------CC-
Q 019908 245 APDTITGDIVFILQLKEHPKFKRKFDDLYVDHTLSLTEALCGFQFALTHLDGRQLLIKSNPGEIIKPGIYF------DN- 317 (334)
Q Consensus 245 ~~~~~~GDL~v~i~v~~~~~f~r~g~dL~~~~~I~l~~al~G~~~~i~tldG~~l~v~i~~g~~i~~g~~~------~~- 317 (334)
.+++.+|||||+|++++|+.|+|+|+|||++++|+|.|||+|+++.|+||||+.|.|+||+|++++||.++ +|
T Consensus 249 ~~~~~pGDLiv~I~~~ph~~F~R~G~DL~~~~~Isl~eAllG~~i~I~tLdG~~l~I~ip~g~vt~pg~~~~I~geGmP~ 328 (421)
T PTZ00037 249 KPNEIPGNVVFILNEKPHDTFKREGGDLFITKKISLYEALTGFVFYITHLDGRKLLVNTPPGEVVKPGDIKVINNEGMPT 328 (421)
T ss_pred CCCCCCCcEEEEEEecCCCCcEEeCCeEEEEEeCCHHHHhcCCEEEeeCCCCCeEEEEeCCCcccCCCcEEEeCCCCccc
Confidence 88889999999999999999999999999999999999999999999999999899999999888888754 22
Q ss_pred ----CCCccEEEEEEEEEe
Q 019908 318 ----FTSVNLYLHEYCFLW 332 (334)
Q Consensus 318 ----~~~GdL~v~~~V~~p 332 (334)
+.+|||||+|+|+||
T Consensus 329 ~~~~~~rGDL~V~~~V~~P 347 (421)
T PTZ00037 329 YKSPFKKGNLYVTFEVIFP 347 (421)
T ss_pred CCCCCCCCCEEEEEEEEcC
Confidence 358999999999999
No 3
>PRK14296 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.8e-76 Score=567.25 Aligned_cols=310 Identities=30% Similarity=0.555 Sum_probs=268.9
Q ss_pred ccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCh---HHHHHHHHHHhhcCCCcccchhcccChhhhhcC--CCCC
Q 019908 11 NTKYYEILGVSKSATEDELKKAYRKAAMKNHPDKGGDP---EKFKELGQAYEVLSDPEKRDIYDQYGEDALKEG--MGGA 85 (334)
Q Consensus 11 ~~~~y~iLgv~~~a~~~eik~ayr~la~~~hPd~~~~~---~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~~~--~~~~ 85 (334)
.+|||++|||+++|+.+|||+|||+||++||||+|+++ ++|++|++||+||+||++|+.||+||+++++.+ ++++
T Consensus 3 ~~dyY~~Lgv~~~a~~~eik~ayrkla~~~HPD~n~~~~a~~~F~~i~~AyevLsD~~KR~~YD~~G~~~~~~~~~~~~~ 82 (372)
T PRK14296 3 KKDYYEVLGVSKTASEQEIRQAYRKLAKQYHPDLNKSPDAHDKMVEINEAADVLLDKDKRKQYDQFGHAAFDGSSGFSSN 82 (372)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHhcCHHHhhhhhhccchhhcCCCCcCcC
Confidence 57999999999999999999999999999999999754 899999999999999999999999999876531 1110
Q ss_pred -C------------CCCCcchhhccccCCCCCCCCCCCCCCcccccccEEEeeeeceeeeecCcccccccceeeeCCCCC
Q 019908 86 -G------------AAHNPFDIFESFFGGGTFGAGGSSRGRRRKQGEDVVHTLKVSLEDLYNGTTKKLSLSRNILCPKCK 152 (334)
Q Consensus 86 -~------------~~~~~~d~f~~~Fg~~~~~~~~~~~~~~~~~~~di~~~l~~sl~e~~~G~~~~i~~~~~~~C~~C~ 152 (334)
+ ++.+|.|+|++|||++. + ..+++.++.|+.+.+.+||+|+|+|+.+++.+.+.+.|++|+
T Consensus 83 ~~~~~~~~~~~~~~g~~~f~d~f~~~fggg~-----~-~~~~~~~g~di~~~l~ltlee~~~G~~~~i~~~~~~~C~~C~ 156 (372)
T PRK14296 83 FGDFEDLFSNMGSSGFSSFTNIFSDFFGSNK-----S-DYQRSTKGQSVSLDIYLTFKELLFGVDKIIELDLLTNCSKCF 156 (372)
T ss_pred CCccccccccccccccccchhhhhhhcCCCc-----c-CCCCcCCCCCeEEEeeccHHHhhCCeeEEEEEeeeeccCCCC
Confidence 1 11234467788876321 1 112345688999999999999999999999999999999999
Q ss_pred CCCCccCC-cccCCCCCCCcEEEEEEeeccceeeEEEEeCCCCccceEEEccCCCCCccCCCceeEEeEEEEEEeccCcc
Q 019908 153 GKGSKSGA-LGKCYGCQGTGMKITTRQIGLGMIQQMQHVCPECRGAGEVISERDKCPQCKANKVTQEKKVLEVHVEKGMQ 231 (334)
Q Consensus 153 G~G~~~~~-~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~~~~~~v~Ip~G~~ 231 (334)
|+|..... ..+|+.|+|+|.++..+++|+ |+++.+.+|+.|.|+|+++. .+|+.|+|.+++.+.++++|+||||++
T Consensus 157 G~G~~~~~~~~~C~~C~G~G~~~~~~~~g~-~~~q~~~~C~~C~G~G~~~~--~~C~~C~G~g~v~~~~~~~V~Ip~G~~ 233 (372)
T PRK14296 157 GSGAESNSDIHICNNCHGTGEVLVQKNMGF-FQFQQSAKCNVCNGAGKIIK--NKCKNCKGKGKYLERKKIEVNIPKGIR 233 (372)
T ss_pred CCccCCCCCCccCCCCCCCceEEEEEeccc-eEEEEEecCCCcCCcceeec--ccccCCCCceEEEEEEEEEEEECCCCC
Confidence 99998765 467999999999999888888 45567899999999999986 899999999999999999999999999
Q ss_pred CCcEEEEecCcCCC-CCCCCcCEEEEEEEEeCCCceee-cCcEEEEEecCHHHHhCCCeEEEecCCCCeEEEEcCCCcee
Q 019908 232 HGQKIAFEGQADEA-PDTITGDIVFILQLKEHPKFKRK-FDDLYVDHTLSLTEALCGFQFALTHLDGRQLLIKSNPGEII 309 (334)
Q Consensus 232 ~G~~i~l~g~G~~~-~~~~~GDL~v~i~v~~~~~f~r~-g~dL~~~~~I~l~~al~G~~~~i~tldG~~l~v~i~~g~~i 309 (334)
+|++|+|+|+|++. +++.+|||+|+|++++|+.|+|+ |+|||++++|||.|||+|+++.|+||||+ +.|+||++ +
T Consensus 234 ~G~~i~~~g~G~~~~~~~~~GDL~v~v~v~~h~~F~R~~G~DL~~~~~Isl~eAllG~~~~i~tldG~-~~v~ip~~--t 310 (372)
T PRK14296 234 PNQQIKLSQKGHASLNNGVNGDLIIDIYLKESKVFEIINNNDILMTYNISYLDAILGNEIIIKTLDGD-IKYKLPKS--I 310 (372)
T ss_pred CCCEEEEeccccCCCCCCCCccEEEEEEEeCCCCEEEeCCCcEEEEEecCHHHHhCCCEEEeeCCCCC-EEEEECCc--c
Confidence 99999999999987 46789999999999999999996 89999999999999999999999999998 88999875 4
Q ss_pred cCCccc------C-----CCCCccEEEEEEEEEe
Q 019908 310 KPGIYF------D-----NFTSVNLYLHEYCFLW 332 (334)
Q Consensus 310 ~~g~~~------~-----~~~~GdL~v~~~V~~p 332 (334)
++|.+. + ++.+|||||+|+|.||
T Consensus 311 ~~g~~~ri~GkGmP~~~~~~~~GDL~V~~~V~~P 344 (372)
T PRK14296 311 NSNELIIINNKGLYKSINKDKRGDLIIKVNIVVP 344 (372)
T ss_pred CCCcEEEEcCCCCCcCCCCCCcCCEEEEEEEECC
Confidence 555433 2 2468999999999999
No 4
>PRK14288 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=4.6e-76 Score=564.23 Aligned_cols=310 Identities=27% Similarity=0.535 Sum_probs=263.7
Q ss_pred ccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-h---HHHHHHHHHHhhcCCCcccchhcccChhhhhcCCCCCC
Q 019908 11 NTKYYEILGVSKSATEDELKKAYRKAAMKNHPDKGGD-P---EKFKELGQAYEVLSDPEKRDIYDQYGEDALKEGMGGAG 86 (334)
Q Consensus 11 ~~~~y~iLgv~~~a~~~eik~ayr~la~~~hPd~~~~-~---~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~~~~~~~~ 86 (334)
..|||+||||+++||.+|||+|||+||++||||+|++ + ++|++|++||+||+||++|++||+||+++++.+.++.+
T Consensus 2 ~~dyY~vLgv~~~As~~eIkkayrkla~k~HPD~~~~~~~a~~~f~~i~~AYevLsd~~kR~~YD~~G~~~~~~~~~~~~ 81 (369)
T PRK14288 2 ELSYYEILEVEKHSNQETIKKSYRKLALKYHPDRNAGDKEAEEKFKLINEAYGVLSDEKKRALYDRYGKKGLNQAGASQS 81 (369)
T ss_pred CCChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHHhccHHHHHHHHHhcccccccCCCCcc
Confidence 4799999999999999999999999999999999983 2 79999999999999999999999999987753211111
Q ss_pred CCCCcc----hhhccccCCCCCCCCCCCCCCcccccccEEEeeeeceeeeecCcccccccceeeeCCCCCCCCCccCCcc
Q 019908 87 AAHNPF----DIFESFFGGGTFGAGGSSRGRRRKQGEDVVHTLKVSLEDLYNGTTKKLSLSRNILCPKCKGKGSKSGALG 162 (334)
Q Consensus 87 ~~~~~~----d~f~~~Fg~~~~~~~~~~~~~~~~~~~di~~~l~~sl~e~~~G~~~~i~~~~~~~C~~C~G~G~~~~~~~ 162 (334)
++.++| ++|++|||+++ .++...++.++.|+.+.|++||+|+|.|+++++.+.+.+.|+.|+|+|.......
T Consensus 82 ~~~~~f~~~~~~F~~~fg~g~----~~~~~~~~~~g~di~~~l~vslee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~ 157 (369)
T PRK14288 82 DFSDFFEDLGSFFEDAFGFGA----RGSKRQKSSIAPDYLQTIELSFKEAVFGCKKTIKVQYQSVCESCDGTGAKDKALE 157 (369)
T ss_pred ccccchhhHHHHHHhhcCCCC----cccCcCCCCCCCCeeEeccccHHHHhCCeEEEEEEEeeccCCCCCCcccCCCCCc
Confidence 222333 35555554211 0111122356889999999999999999999999999999999999999877677
Q ss_pred cCCCCCCCcEEEEEEeeccceeeEEEEeCCCCccceEEEccCCCCCccCCCceeEEeEEEEEEeccCccCCcEEEEecCc
Q 019908 163 KCYGCQGTGMKITTRQIGLGMIQQMQHVCPECRGAGEVISERDKCPQCKANKVTQEKKVLEVHVEKGMQHGQKIAFEGQA 242 (334)
Q Consensus 163 ~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~~~~~~v~Ip~G~~~G~~i~l~g~G 242 (334)
+|+.|+|+|.+.... |++ +++++|+.|.|+|+++. .+|+.|+|.+++.+.++++|.||||+++|++|+|+|+|
T Consensus 158 ~C~~C~G~G~~~~~~----g~~-~~~~~C~~C~G~G~~~~--~~C~~C~G~g~v~~~~~l~V~IP~G~~~G~~i~l~g~G 230 (369)
T PRK14288 158 TCKQCNGQGQVFMRQ----GFM-SFAQTCGACQGKGKIIK--TPCQACKGKTYILKDEEIDAIIPEGIDDQNRMVLKNKG 230 (369)
T ss_pred CCCCCCCCcEEEEEe----ceE-EEEEecCCCCCCceEcc--ccCccCCCcceEEEEEEEEEecCCCCCCCCEEEEccCc
Confidence 899999999876533 455 45679999999999986 88999999999999999999999999999999999999
Q ss_pred CCCCCCCCcCEEEEEEEEeCCCceeecCcEEEEEecCHHHHhCCCeEEEecCCCCeEEEEcCCCceecCCccc------C
Q 019908 243 DEAPDTITGDIVFILQLKEHPKFKRKFDDLYVDHTLSLTEALCGFQFALTHLDGRQLLIKSNPGEIIKPGIYF------D 316 (334)
Q Consensus 243 ~~~~~~~~GDL~v~i~v~~~~~f~r~g~dL~~~~~I~l~~al~G~~~~i~tldG~~l~v~i~~g~~i~~g~~~------~ 316 (334)
++.+++.+|||+|+|+|++|+.|+|+|+|||++++|||.|||+|+++.|+||||+.+.|+||++ +++|.+. +
T Consensus 231 ~~~~~~~~GDL~v~i~v~~h~~f~R~G~DL~~~~~Isl~eAllG~~i~v~tLdG~~l~i~i~~~--~~~g~~~~i~g~G~ 308 (369)
T PRK14288 231 NEYEKGKRGDLYLEARVKEDEHFKREGCDLFIEAPVFFTTIALGHTIKVPSLKGDELELKIPRN--ARDRQTFAFRNEGV 308 (369)
T ss_pred cCCCCCCCCCEEEEEEEEECCCcEEeCCEEEEEEecCHHHHhcCCEEEeecCCCCEEEEEeCCC--CCCCcEEEEcCCCC
Confidence 9988888999999999999999999999999999999999999999999999999889999875 4565533 2
Q ss_pred C----CCCccEEEEEEEEEee
Q 019908 317 N----FTSVNLYLHEYCFLWL 333 (334)
Q Consensus 317 ~----~~~GdL~v~~~V~~p~ 333 (334)
| ..+|||||+|+|+||-
T Consensus 309 p~~~~~~~GDL~v~~~v~~P~ 329 (369)
T PRK14288 309 KHPESSYRGSLIVELQVIYPK 329 (369)
T ss_pred CCCCCCCCCCEEEEEEEECCC
Confidence 2 3479999999999993
No 5
>PRK14298 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.4e-74 Score=555.02 Aligned_cols=314 Identities=34% Similarity=0.607 Sum_probs=271.3
Q ss_pred CCccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCh---HHHHHHHHHHhhcCCCcccchhcccChhhhhcCCCC-
Q 019908 9 SNNTKYYEILGVSKSATEDELKKAYRKAAMKNHPDKGGDP---EKFKELGQAYEVLSDPEKRDIYDQYGEDALKEGMGG- 84 (334)
Q Consensus 9 ~~~~~~y~iLgv~~~a~~~eik~ayr~la~~~hPd~~~~~---~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~~~~~~- 84 (334)
+..+|||+||||+++|+.+|||+|||+||++||||+|+++ ++|++|++||++|+||.+|+.||+||+++++.++++
T Consensus 2 ~~~~d~y~iLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g~~~~~~~~ 81 (377)
T PRK14298 2 ATTRDYYEILGLSKDASVEDIKKAYRKLAMKYHPDKNKEPDAEEKFKEISEAYAVLSDAEKRAQYDRFGHAGIDNQYSAE 81 (377)
T ss_pred CCCCCHHHhhCCCCCCCHHHHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHHHhcchHhhhhhhhcCccccccccCcc
Confidence 3467999999999999999999999999999999999754 799999999999999999999999998877643211
Q ss_pred ----CCCCCCcchhhccccCCCCCCCCCCCCCCcccccccEEEeeeeceeeeecCcccccccceeeeCCCCCCCCCccCC
Q 019908 85 ----AGAAHNPFDIFESFFGGGTFGAGGSSRGRRRKQGEDVVHTLKVSLEDLYNGTTKKLSLSRNILCPKCKGKGSKSGA 160 (334)
Q Consensus 85 ----~~~~~~~~d~f~~~Fg~~~~~~~~~~~~~~~~~~~di~~~l~~sl~e~~~G~~~~i~~~~~~~C~~C~G~G~~~~~ 160 (334)
++++.++.|+|++|||+++ +. ..+++.++.|+.+.|++||+|+|+|+++++.+.+.+.|+.|+|+|...+.
T Consensus 82 ~~~~~~~~~~~~d~f~~~Fgg~~----~~-~~~~~~~g~di~~~l~vslee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~ 156 (377)
T PRK14298 82 DIFRGADFGGFGDIFEMFFGGGG----RR-GRMGPRRGSDLRYDLYITLEEAAFGVRKDIDVPRAERCSTCSGTGAKPGT 156 (377)
T ss_pred cccccCCcCcchhhhHhhhcCCC----cc-CCCCCCCCCCEEEEEEEEHHHhhCCeEEEEEEEeeccCCCCCCCcccCCC
Confidence 1122345688999997421 11 11234578899999999999999999999999999999999999998776
Q ss_pred c-ccCCCCCCCcEEEEEEeeccceeeEEEEeCCCCccceEEEccCCCCCccCCCceeEEeEEEEEEeccCccCCcEEEEe
Q 019908 161 L-GKCYGCQGTGMKITTRQIGLGMIQQMQHVCPECRGAGEVISERDKCPQCKANKVTQEKKVLEVHVEKGMQHGQKIAFE 239 (334)
Q Consensus 161 ~-~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~~~~~~v~Ip~G~~~G~~i~l~ 239 (334)
. .+|+.|+|+|.++..+++++| +++++.+|+.|.|+|+++. .+|+.|+|.+++.+.++++|.||||+++|++|+|+
T Consensus 157 ~~~~C~~C~G~G~~~~~~~~~~g-~~~~~~~C~~C~G~G~~~~--~~C~~C~G~g~v~~~~~l~V~IppG~~~G~~i~~~ 233 (377)
T PRK14298 157 SPKRCPTCGGTGQVTTTRSTPLG-QFVTTTTCSTCHGRGQVIE--SPCPVCSGTGKVRKTRKITVNVPAGADSGLRLKLS 233 (377)
T ss_pred CCCcCCCCCCccEEEEEEecCce-eEEEEEeCCCCCCCCcccC--CCCCCCCCccEEEEEEEEEecCCCCCCCCCEEEEe
Confidence 4 679999999999888775444 4568899999999999886 89999999999999999999999999999999999
Q ss_pred cCcCCC-CCCCCcCEEEEEEEEeCCCceeecCcEEEEEecCHHHHhCCCeEEEecCCCCeEEEEcCCCceecCCccc---
Q 019908 240 GQADEA-PDTITGDIVFILQLKEHPKFKRKFDDLYVDHTLSLTEALCGFQFALTHLDGRQLLIKSNPGEIIKPGIYF--- 315 (334)
Q Consensus 240 g~G~~~-~~~~~GDL~v~i~v~~~~~f~r~g~dL~~~~~I~l~~al~G~~~~i~tldG~~l~v~i~~g~~i~~g~~~--- 315 (334)
|+|++. +++.+|||||+|++++|+.|+|+|+||++++.|||.|||+|+++.|+||||+ +.|+||++ ++++...
T Consensus 234 g~G~~~~~~~~~GDL~i~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldG~-i~v~ip~g--~~~g~~lri~ 310 (377)
T PRK14298 234 GEGEAGSPGAPSGDLYIVLHVKEHDYFERVGDDIISEIPISFTQAALGADIMVPTLYGK-VKMNIPPG--TQTHSVFRLK 310 (377)
T ss_pred cccCCCCCCCCCcCEEEEEEEecCCCeEEEcCcEEEEEEeCHHHHhCCCeEEEecCCCC-EEEEeCCC--cccCCEEEEC
Confidence 999986 5678999999999999999999999999999999999999999999999998 78999986 3455432
Q ss_pred ---CC----CCCccEEEEEEEEEee
Q 019908 316 ---DN----FTSVNLYLHEYCFLWL 333 (334)
Q Consensus 316 ---~~----~~~GdL~v~~~V~~p~ 333 (334)
+| ..+|||||+|+|.||-
T Consensus 311 g~G~p~~~~~~~GDL~V~~~V~~P~ 335 (377)
T PRK14298 311 DKGMPRLHGHGKGDQLVKVIVKTPT 335 (377)
T ss_pred CCCCCCCCCCCCCCEEEEEEEECCC
Confidence 22 3479999999999993
No 6
>PRK14286 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.3e-74 Score=554.70 Aligned_cols=315 Identities=35% Similarity=0.663 Sum_probs=267.6
Q ss_pred CccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCh----HHHHHHHHHHhhcCCCcccchhcccChhhhhcCCCC-
Q 019908 10 NNTKYYEILGVSKSATEDELKKAYRKAAMKNHPDKGGDP----EKFKELGQAYEVLSDPEKRDIYDQYGEDALKEGMGG- 84 (334)
Q Consensus 10 ~~~~~y~iLgv~~~a~~~eik~ayr~la~~~hPd~~~~~----~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~~~~~~- 84 (334)
.++|||++|||+++|+.+|||+|||+||++||||+|++. ++|++|++||+||+||++|++||+||+++++.+.++
T Consensus 2 ~~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g~~~~~~~~ 81 (372)
T PRK14286 2 SERSYYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKGNKESEEKFKEATEAYEILRDPKKRQAYDQFGKAGVNAGAGGF 81 (372)
T ss_pred CCCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhccHHHHHHHHHhCchhhccccCCC
Confidence 357999999999999999999999999999999999732 899999999999999999999999999887632111
Q ss_pred -CCC-------CCCcchhhccccCCCCCCCCCCCCCCcccccccEEEeeeeceeeeecCcccccccceeeeCCCCCCCCC
Q 019908 85 -AGA-------AHNPFDIFESFFGGGTFGAGGSSRGRRRKQGEDVVHTLKVSLEDLYNGTTKKLSLSRNILCPKCKGKGS 156 (334)
Q Consensus 85 -~~~-------~~~~~d~f~~~Fg~~~~~~~~~~~~~~~~~~~di~~~l~~sl~e~~~G~~~~i~~~~~~~C~~C~G~G~ 156 (334)
.++ +.++.|+|++|||+++.++..+.......++.|+.+.|++||+|+|+|+++++.+++.+.|++|+|+|.
T Consensus 82 ~~~~~~~~~~~~~~~~d~f~~ffgg~~~~~~~~~~~~~~~~g~di~~~l~vtLee~~~G~~k~i~~~r~~~C~~C~G~G~ 161 (372)
T PRK14286 82 GQGAYTDFSDIFGDFGDIFGDFFGGGRGGGSGGGRRSGPQRGSDLRYNLEVSLEDAALGREYKIEIPRLESCVDCNGSGA 161 (372)
T ss_pred CCCCcccccccccchhhHHHHhhCCCccCCCcccccCCCCCCCCeeEEEEEEHHHHhCCeeEEEEeeccccCCCCcCCCc
Confidence 111 124558899999742111000111123456889999999999999999999999999999999999999
Q ss_pred ccCC-cccCCCCCCCcEEEEEEeeccceeeEEEEeCCCCccceEEEccCCCCCccCCCceeEEeEEEEEEeccCccCCcE
Q 019908 157 KSGA-LGKCYGCQGTGMKITTRQIGLGMIQQMQHVCPECRGAGEVISERDKCPQCKANKVTQEKKVLEVHVEKGMQHGQK 235 (334)
Q Consensus 157 ~~~~-~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~~~~~~v~Ip~G~~~G~~ 235 (334)
.... ..+|+.|+|+|.++... |+++ ++++|+.|.|+|+++. ++|+.|+|.+++.+.++++|+||||+++|++
T Consensus 162 ~~~~~~~~C~~C~G~G~v~~~~----G~~~-~~~~C~~C~G~G~~~~--~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~ 234 (372)
T PRK14286 162 SKGSSPTTCPDCGGSGQIRRTQ----GFFS-VATTCPTCRGKGTVIS--NPCKTCGGQGLQEKRRTINIKIPPGVETGSR 234 (372)
T ss_pred CCCCCCccCCCCcCeEEEEEEe----ceEE-EEEeCCCCCceeeEec--ccCCCCCCCcEEecceEEEEEECCCCCCCCE
Confidence 8765 46799999999876542 5664 6789999999999986 8999999999999999999999999999999
Q ss_pred EEEecCcCCCC-CCCCcCEEEEEEEEeCCCceeecCcEEEEEecCHHHHhCCCeEEEecCCCCeEEEEcCCCceecCCcc
Q 019908 236 IAFEGQADEAP-DTITGDIVFILQLKEHPKFKRKFDDLYVDHTLSLTEALCGFQFALTHLDGRQLLIKSNPGEIIKPGIY 314 (334)
Q Consensus 236 i~l~g~G~~~~-~~~~GDL~v~i~v~~~~~f~r~g~dL~~~~~I~l~~al~G~~~~i~tldG~~l~v~i~~g~~i~~g~~ 314 (334)
|+|+|+|++.+ +..+|||||+|+|++|+.|+|+|+||++++.|+|.+||+|+++.|+||||+.+.|+||++ +++|.+
T Consensus 235 i~~~g~G~~~~~~~~~GDL~i~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldG~~i~v~ip~g--~~~g~~ 312 (372)
T PRK14286 235 LKVSGEGEAGPNGGPHGDLYVVTHIKKHELFERQGNDLILVRKISLAQAILGAEIEVPTIDGKKAKMKIPEG--TESGQV 312 (372)
T ss_pred EEECCccccCCCCCCCceEEEEEEEccCCCEEEecCCEEEEEEECHHHHhCCCEEEEeCCCCCEEEEEeCCc--cCCCcE
Confidence 99999999876 456799999999999999999999999999999999999999999999999899999976 456553
Q ss_pred c------CC----CCCccEEEEEEEEEee
Q 019908 315 F------DN----FTSVNLYLHEYCFLWL 333 (334)
Q Consensus 315 ~------~~----~~~GdL~v~~~V~~p~ 333 (334)
. +| ..+|||||+|+|.||-
T Consensus 313 ~ri~G~G~P~~~~~~~GDL~V~~~V~~P~ 341 (372)
T PRK14286 313 FRLKGHGMPYLGAYGKGDQHVIVKIEIPK 341 (372)
T ss_pred EEECCCCCCCCCCCCCCcEEEEEEEECCC
Confidence 3 22 3579999999999993
No 7
>PRK14287 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=4.1e-74 Score=551.09 Aligned_cols=312 Identities=32% Similarity=0.636 Sum_probs=272.2
Q ss_pred ccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCh---HHHHHHHHHHhhcCCCcccchhcccChhhhhcCCCCC--
Q 019908 11 NTKYYEILGVSKSATEDELKKAYRKAAMKNHPDKGGDP---EKFKELGQAYEVLSDPEKRDIYDQYGEDALKEGMGGA-- 85 (334)
Q Consensus 11 ~~~~y~iLgv~~~a~~~eik~ayr~la~~~hPd~~~~~---~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~~~~~~~-- 85 (334)
.+|||++|||+++|+.+|||+|||+||++||||+|+++ ++|++|++||++|+||++|++||+||+++++.+++++
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~~~~~f~~i~~Ay~~L~d~~kR~~YD~~G~~~~~~~~~~~~~ 82 (371)
T PRK14287 3 KRDYYEVLGVDRNASVDEVKKAYRKLARKYHPDVNKAPDAEDKFKEVKEAYDTLSDPQKKAHYDQFGHTDPNQGFGGGGA 82 (371)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhCcHhHHHHHHhhCCcccccccCCCCC
Confidence 47999999999999999999999999999999999753 7999999999999999999999999998776432211
Q ss_pred CCCCCcchhhccccCCCCCCCCCCCCCCcccccccEEEeeeeceeeeecCcccccccceeeeCCCCCCCCCccCC-cccC
Q 019908 86 GAAHNPFDIFESFFGGGTFGAGGSSRGRRRKQGEDVVHTLKVSLEDLYNGTTKKLSLSRNILCPKCKGKGSKSGA-LGKC 164 (334)
Q Consensus 86 ~~~~~~~d~f~~~Fg~~~~~~~~~~~~~~~~~~~di~~~l~~sl~e~~~G~~~~i~~~~~~~C~~C~G~G~~~~~-~~~C 164 (334)
+++.++.|+|++|||+++ +.+..+.+.++.|+.+.+.+||+|+|.|+.+++.+.+.+.|+.|+|+|..... ..+|
T Consensus 83 ~~f~~~~d~f~~~fgg~~----~~~~~~~~~~g~d~~~~l~vslee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C 158 (371)
T PRK14287 83 GDFGGFSDIFDMFFGGGG----GRRNPNAPRQGADLQYTMTLEFKEAVFGKETEIEIPREETCGTCHGSGAKPGTKPETC 158 (371)
T ss_pred ccccchHHHHHhhhcccc----CCCCCCCCCCCCCEEEEEEEEHHHhcCCeEEEEEEeeeccCCCCCCcccCCCCCCccc
Confidence 122345689999997421 11111223568899999999999999999999999999999999999988765 4679
Q ss_pred CCCCCCcEEEEEEeeccceeeEEEEeCCCCccceEEEccCCCCCccCCCceeEEeEEEEEEeccCccCCcEEEEecCcCC
Q 019908 165 YGCQGTGMKITTRQIGLGMIQQMQHVCPECRGAGEVISERDKCPQCKANKVTQEKKVLEVHVEKGMQHGQKIAFEGQADE 244 (334)
Q Consensus 165 ~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~~~~~~v~Ip~G~~~G~~i~l~g~G~~ 244 (334)
+.|+|+|.+...+++++|++++ +.+|+.|.|+|+++. .+|+.|.|.+++.+.++++|.||||+++|++|+|+|+|++
T Consensus 159 ~~C~G~G~~~~~~~~~~G~~~~-~~~C~~C~G~G~~~~--~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~~G~G~~ 235 (371)
T PRK14287 159 SHCGGSGQLNVEQNTPFGRVVN-RRVCHHCEGTGKIIK--QKCATCGGKGKVRKRKKINVKVPAGIDHGQQLRVSGQGEA 235 (371)
T ss_pred CCCCCEEEEEEEEecCCceEEE-EEeCCCCCCCCcccc--ccCCCCCCeeEEeeeEEEEEEECCcCCCCCEEEEccCCcC
Confidence 9999999999999999999886 789999999999986 8899999999999999999999999999999999999998
Q ss_pred CC-CCCCcCEEEEEEEEeCCCceeecCcEEEEEecCHHHHhCCCeEEEecCCCCeEEEEcCCCceecCCccc------CC
Q 019908 245 AP-DTITGDIVFILQLKEHPKFKRKFDDLYVDHTLSLTEALCGFQFALTHLDGRQLLIKSNPGEIIKPGIYF------DN 317 (334)
Q Consensus 245 ~~-~~~~GDL~v~i~v~~~~~f~r~g~dL~~~~~I~l~~al~G~~~~i~tldG~~l~v~i~~g~~i~~g~~~------~~ 317 (334)
.+ ++.+|||+|+|++++|+.|+|+|+||++++.|||.+||+|+++.|+||||+ +.|+||++ ++++... +|
T Consensus 236 ~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~~ldg~-i~v~ip~g--~~~g~~~ri~g~G~p 312 (371)
T PRK14287 236 GVNGGPPGDLYVVFNVKPHEFFERDGDDIYCEMPLTFPQVALGDEIEVPTLNGK-VKLKIPAG--TQTGTSFRLRGKGVP 312 (371)
T ss_pred CCCCCCCccEEEEEEEecCCCEEEecCCeEEEEeccHHHHhCCCEEEEEcCCCC-EEEEECCC--ccCCcEEEEcCCCcc
Confidence 74 557899999999999999999999999999999999999999999999998 88999986 3455432 22
Q ss_pred ----CCCccEEEEEEEEEe
Q 019908 318 ----FTSVNLYLHEYCFLW 332 (334)
Q Consensus 318 ----~~~GdL~v~~~V~~p 332 (334)
..+|||||+|+|.+|
T Consensus 313 ~~~~~~~GDL~V~~~v~~P 331 (371)
T PRK14287 313 NVHGRGQGDQHVQVRVVTP 331 (371)
T ss_pred CCCCCCCCCEEEEEEEEcC
Confidence 347999999999999
No 8
>PRK14276 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=4.9e-74 Score=552.56 Aligned_cols=312 Identities=34% Similarity=0.615 Sum_probs=272.7
Q ss_pred ccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCh---HHHHHHHHHHhhcCCCcccchhcccChhhhhcCCCC---
Q 019908 11 NTKYYEILGVSKSATEDELKKAYRKAAMKNHPDKGGDP---EKFKELGQAYEVLSDPEKRDIYDQYGEDALKEGMGG--- 84 (334)
Q Consensus 11 ~~~~y~iLgv~~~a~~~eik~ayr~la~~~hPd~~~~~---~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~~~~~~--- 84 (334)
++|||++|||+++|+.+|||+|||+||++||||+|+++ ++|++|++||++|+||++|++||+||+++++.++++
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~~~~~~~~~~~~ 82 (380)
T PRK14276 3 NTEYYDRLGVSKDASQDEIKKAYRKLSKKYHPDINKEPGAEEKYKEVQEAYETLSDPQKRAAYDQYGAAGANGGFGGGAG 82 (380)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcCHHHHHHHHHHHHHHhcCHhhhhhHhhcCCccccCCCCCCCC
Confidence 57999999999999999999999999999999999764 899999999999999999999999999887643211
Q ss_pred C-C------CCCCcchhhccccCCCCCCCCCCCCCCcccccccEEEeeeeceeeeecCcccccccceeeeCCCCCCCCCc
Q 019908 85 A-G------AAHNPFDIFESFFGGGTFGAGGSSRGRRRKQGEDVVHTLKVSLEDLYNGTTKKLSLSRNILCPKCKGKGSK 157 (334)
Q Consensus 85 ~-~------~~~~~~d~f~~~Fg~~~~~~~~~~~~~~~~~~~di~~~l~~sl~e~~~G~~~~i~~~~~~~C~~C~G~G~~ 157 (334)
+ + ++.++.|+|++|||+++ +.+....+.++.|+.+.|.+||+|+|+|+++++.+.+.+.|+.|+|+|..
T Consensus 83 ~~~~~~~~~~~~~~~d~f~~~fgg~~----~~~~~~~~~~g~di~~~l~vtLee~~~G~~~~i~~~~~~~C~~C~G~G~~ 158 (380)
T PRK14276 83 GFGGFDGSGGFGGFEDIFSSFFGGGG----ARRNPNAPRQGDDLQYRVNLDFEEAIFGKEKEVSYNREATCHTCNGSGAK 158 (380)
T ss_pred CCCCccccccccchhhHHHHHhCccc----cccCcCCCCCCCCEEEEEEEEHHHhcCCeEEEEEeeccccCCCCcCcccC
Confidence 0 1 12345688999997421 11112233568899999999999999999999999999999999999998
Q ss_pred cCC-cccCCCCCCCcEEEEEEeeccceeeEEEEeCCCCccceEEEccCCCCCccCCCceeEEeEEEEEEeccCccCCcEE
Q 019908 158 SGA-LGKCYGCQGTGMKITTRQIGLGMIQQMQHVCPECRGAGEVISERDKCPQCKANKVTQEKKVLEVHVEKGMQHGQKI 236 (334)
Q Consensus 158 ~~~-~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~~~~~~v~Ip~G~~~G~~i 236 (334)
... ..+|+.|+|+|.+...+++++|++++ +.+|+.|.|+|+++. .+|+.|+|.+++.+.++++|.||+|+++|++|
T Consensus 159 ~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~-~~~C~~C~G~G~~~~--~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~i 235 (380)
T PRK14276 159 PGTSPVTCGKCHGSGVITVDTQTPLGMMRR-QVTCDVCHGTGKEIK--EPCQTCHGTGHEKQAHTVSVKIPAGVETGQQI 235 (380)
T ss_pred CCCCCccCCCCCCeeEEEEEEecCCceEEE-EEECCCCCCCCcccc--CCCCCCCCceEEEEEEEEEEEeCCCccCCcEE
Confidence 765 46799999999999999999999986 779999999999986 89999999999999999999999999999999
Q ss_pred EEecCcCCCC-CCCCcCEEEEEEEEeCCCceeecCcEEEEEecCHHHHhCCCeEEEecCCCCeEEEEcCCCceecCCccc
Q 019908 237 AFEGQADEAP-DTITGDIVFILQLKEHPKFKRKFDDLYVDHTLSLTEALCGFQFALTHLDGRQLLIKSNPGEIIKPGIYF 315 (334)
Q Consensus 237 ~l~g~G~~~~-~~~~GDL~v~i~v~~~~~f~r~g~dL~~~~~I~l~~al~G~~~~i~tldG~~l~v~i~~g~~i~~g~~~ 315 (334)
+|+|+|++.+ +..+|||+|+|+|++|+.|+|+|+||+++++|||.|||+|+++.|+||||+ +.|+||++ +++|...
T Consensus 236 ~l~G~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~v~tldg~-i~v~ip~g--~~~g~~~ 312 (380)
T PRK14276 236 RLQGQGEAGFNGGPYGDLYVVFRVEPSKKFERDGSTIYYTLPISFVQAALGDTVEVPTVHGD-VELKIPAG--TQTGKKF 312 (380)
T ss_pred EEeccccCCCCCCCCcCEEEEEEEEECcceeeecceEEEEEecCHHHHhCCCeEEEEcCCCc-EEEEECCC--CCCCCEE
Confidence 9999999875 456799999999999999999999999999999999999999999999998 78999976 3555433
Q ss_pred ------C----CCCCccEEEEEEEEEe
Q 019908 316 ------D----NFTSVNLYLHEYCFLW 332 (334)
Q Consensus 316 ------~----~~~~GdL~v~~~V~~p 332 (334)
+ ...+|||||+|+|.||
T Consensus 313 ~i~g~G~p~~~~~~~GDL~V~~~v~~P 339 (380)
T PRK14276 313 RLRGKGAPKLRGGGNGDQHVTVNIVTP 339 (380)
T ss_pred EECCCCcCCCCCCCCCCEEEEEEEECC
Confidence 2 2357999999999999
No 9
>PRK14277 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=6.9e-74 Score=552.59 Aligned_cols=318 Identities=34% Similarity=0.627 Sum_probs=271.4
Q ss_pred CCccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCh----HHHHHHHHHHhhcCCCcccchhcccChhhhhcC-CC
Q 019908 9 SNNTKYYEILGVSKSATEDELKKAYRKAAMKNHPDKGGDP----EKFKELGQAYEVLSDPEKRDIYDQYGEDALKEG-MG 83 (334)
Q Consensus 9 ~~~~~~y~iLgv~~~a~~~eik~ayr~la~~~hPd~~~~~----~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~~~-~~ 83 (334)
++.+|||+||||+++|+.+|||+|||+||++||||+|++. ++|++|++||++|+|+.+|+.||+||+++++.+ ++
T Consensus 2 ~~~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~~~~~~~~~~ 81 (386)
T PRK14277 2 AAKKDYYEILGVDRNATEEEIKKAYRRLAKKYHPDLNPGDKEAEQKFKEINEAYEILSDPQKRAQYDQFGHAAFDPGGFG 81 (386)
T ss_pred CCCCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHhhccccccccccc
Confidence 3457999999999999999999999999999999999842 799999999999999999999999998876532 11
Q ss_pred CC----CC---------CCCcchhhccccCCCCCCCCCCCCCCcccccccEEEeeeeceeeeecCcccccccceeeeCCC
Q 019908 84 GA----GA---------AHNPFDIFESFFGGGTFGAGGSSRGRRRKQGEDVVHTLKVSLEDLYNGTTKKLSLSRNILCPK 150 (334)
Q Consensus 84 ~~----~~---------~~~~~d~f~~~Fg~~~~~~~~~~~~~~~~~~~di~~~l~~sl~e~~~G~~~~i~~~~~~~C~~ 150 (334)
++ ++ +.++.|+|++||++. |+++..+..+++.++.|+.+.|.+||+|+|+|+++++.+++.+.|+.
T Consensus 82 ~~~~~~~g~~~~~~~~~~~~~~d~f~~~F~~~-fgg~~~~~~~~~~kg~di~~~l~vtLee~~~G~~~~v~~~r~~~C~~ 160 (386)
T PRK14277 82 QGGFGQGGFGGGGFDFDFGGFGDIFEDIFGDF-FGTGRRRAETGPQKGADIRYDLELTFEEAAFGTEKEIEVERFEKCDV 160 (386)
T ss_pred cCCcCCCCccccCccccccchhHHHHHhhccc-ccCCCcCCCCCCCCCCCEEEEEEEEHHHHhCCeEEEEEEEeeccCCC
Confidence 00 01 022346788888632 22111111122457889999999999999999999999999999999
Q ss_pred CCCCCCccCC-cccCCCCCCCcEEEEEEeeccceeeEEEEeCCCCccceEEEccCCCCCccCCCceeEEeEEEEEEeccC
Q 019908 151 CKGKGSKSGA-LGKCYGCQGTGMKITTRQIGLGMIQQMQHVCPECRGAGEVISERDKCPQCKANKVTQEKKVLEVHVEKG 229 (334)
Q Consensus 151 C~G~G~~~~~-~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~~~~~~v~Ip~G 229 (334)
|+|+|..... ..+|+.|+|+|.++..+++++|++++. .+|+.|.|+|+++. .+|+.|+|.+++.+.+.++|.||||
T Consensus 161 C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~-~~C~~C~G~G~~~~--~~C~~C~G~g~v~~~~~l~V~Ip~G 237 (386)
T PRK14277 161 CKGSGAKPGSKPVTCPVCHGTGQVRTRQNTPFGRIVNI-RTCDRCHGEGKIIT--DPCNKCGGTGRIRRRRKIKVNIPAG 237 (386)
T ss_pred CCCCCcCCCCCCccCCCCCCEEEEEEEEeccCceEEEE-EECCCCCcceeecc--CCCCCCCCCcEEeeeeEEEEecCCC
Confidence 9999998665 567999999999999999999998875 79999999999986 8999999999999999999999999
Q ss_pred ccCCcEEEEecCcCCC-CCCCCcCEEEEEEEEeCCCceeecCcEEEEEecCHHHHhCCCeEEEecCCCCeEEEEcCCCce
Q 019908 230 MQHGQKIAFEGQADEA-PDTITGDIVFILQLKEHPKFKRKFDDLYVDHTLSLTEALCGFQFALTHLDGRQLLIKSNPGEI 308 (334)
Q Consensus 230 ~~~G~~i~l~g~G~~~-~~~~~GDL~v~i~v~~~~~f~r~g~dL~~~~~I~l~~al~G~~~~i~tldG~~l~v~i~~g~~ 308 (334)
+++|++|+|+|+|++. .+..+|||+|+|+|++|+.|+|+|+||+++++|||.|||+|+++.|+||||+ +.|+||++
T Consensus 238 ~~~G~~i~~~g~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldG~-~~v~ip~g-- 314 (386)
T PRK14277 238 IDDGQMITLRGEGEPGIKGGPNGDLYIVIKVKPHPLFKREGYNVYLEMPITFTDAALGGEIEIPTLDGK-VKFTIPEG-- 314 (386)
T ss_pred ccCCcEEEEccccccCCCCCCCccEEEEEEEecCCCeEEecCCEEEEEEcCHHHHhCCCEEEEEcCCCC-EEEEECCC--
Confidence 9999999999999985 3567899999999999999999999999999999999999999999999998 78999887
Q ss_pred ecCCccc------CC----CCCccEEEEEEEEEee
Q 019908 309 IKPGIYF------DN----FTSVNLYLHEYCFLWL 333 (334)
Q Consensus 309 i~~g~~~------~~----~~~GdL~v~~~V~~p~ 333 (334)
+++|... +| ..+|||||+|+|.||-
T Consensus 315 ~~~g~~~ri~g~G~p~~~~~~~GDL~v~~~V~~P~ 349 (386)
T PRK14277 315 TQTGTKFRLRGKGIPHLRGRGRGDQIVKVYIEVPK 349 (386)
T ss_pred CCCCCEEEECCCCCCCCCCCCCCCEEEEEEEEeCC
Confidence 3455433 22 3579999999999993
No 10
>PRK14280 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.5e-73 Score=548.49 Aligned_cols=312 Identities=34% Similarity=0.666 Sum_probs=271.5
Q ss_pred ccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCh---HHHHHHHHHHhhcCCCcccchhcccChhhhhcCCCCCC-
Q 019908 11 NTKYYEILGVSKSATEDELKKAYRKAAMKNHPDKGGDP---EKFKELGQAYEVLSDPEKRDIYDQYGEDALKEGMGGAG- 86 (334)
Q Consensus 11 ~~~~y~iLgv~~~a~~~eik~ayr~la~~~hPd~~~~~---~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~~~~~~~~- 86 (334)
.+|||+||||+++|+.+|||+|||+||++||||+|+++ ++|++|++||++|+||.+|++||+||+++++.++++++
T Consensus 3 ~~~~y~iLgv~~~a~~~eik~ayr~la~~~HpD~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~~~~~~~~~~~~~ 82 (376)
T PRK14280 3 KRDYYEVLGVSKSASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDDQKRAQYDQFGHAGPNQGFGGGGF 82 (376)
T ss_pred CCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhccHhHHHHHHhcCccccccCcCCCCC
Confidence 47999999999999999999999999999999999754 89999999999999999999999999987764321111
Q ss_pred ---C---CCCcchhhccccCCCCCCCCCCCCCCcccccccEEEeeeeceeeeecCcccccccceeeeCCCCCCCCCccCC
Q 019908 87 ---A---AHNPFDIFESFFGGGTFGAGGSSRGRRRKQGEDVVHTLKVSLEDLYNGTTKKLSLSRNILCPKCKGKGSKSGA 160 (334)
Q Consensus 87 ---~---~~~~~d~f~~~Fg~~~~~~~~~~~~~~~~~~~di~~~l~~sl~e~~~G~~~~i~~~~~~~C~~C~G~G~~~~~ 160 (334)
+ ++++.|+|++|||+++. .+..+.+.++.|+.+.|.+||+|+|+|+++++.+.+.+.|+.|+|+|.....
T Consensus 83 ~~~~~~~~~~~~d~f~~~fgg~~~----~~~~~~~~kg~di~~~l~vtLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~ 158 (376)
T PRK14280 83 GGGDFGGGFGFEDIFSSFFGGGGR----RRDPNAPRQGADLQYTMTLTFEEAVFGKEKEIEIPKEETCDTCHGSGAKPGT 158 (376)
T ss_pred CCCCccccccchhhHHHHhCCccc----cCcccccccccCEEEEEEEEHHHHhCCceeEEEEeeeccCCCCCCcccCCCC
Confidence 1 12466889999974211 1111223568899999999999999999999999999999999999998765
Q ss_pred -cccCCCCCCCcEEEEEEeeccceeeEEEEeCCCCccceEEEccCCCCCccCCCceeEEeEEEEEEeccCccCCcEEEEe
Q 019908 161 -LGKCYGCQGTGMKITTRQIGLGMIQQMQHVCPECRGAGEVISERDKCPQCKANKVTQEKKVLEVHVEKGMQHGQKIAFE 239 (334)
Q Consensus 161 -~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~~~~~~v~Ip~G~~~G~~i~l~ 239 (334)
..+|+.|+|+|.+...+++++|++++ +.+|+.|.|+|+++. .+|+.|+|++++.+.++++|.||+|+++|++|+|+
T Consensus 159 ~~~~C~~C~G~G~~~~~~~~~~g~~~~-~~~C~~C~G~G~~~~--~~C~~C~G~g~v~~~~~i~V~Ip~G~~~G~~i~l~ 235 (376)
T PRK14280 159 SKETCSHCGGSGQVSVEQNTPFGRVVN-RQTCPHCNGTGQEIK--EKCPTCHGKGKVRKRKKINVKIPAGVDNGQQIRVS 235 (376)
T ss_pred CCccCCCCCCEEEEEEEeecCCceEEE-EEEcCCCCCCCceec--CCCCCCCCceEEEEEEEEEEEeCCCCcCCcEEEEc
Confidence 46799999999999888999999874 789999999999986 89999999999999999999999999999999999
Q ss_pred cCcCCCC-CCCCcCEEEEEEEEeCCCceeecCcEEEEEecCHHHHhCCCeEEEecCCCCeEEEEcCCCceecCCccc---
Q 019908 240 GQADEAP-DTITGDIVFILQLKEHPKFKRKFDDLYVDHTLSLTEALCGFQFALTHLDGRQLLIKSNPGEIIKPGIYF--- 315 (334)
Q Consensus 240 g~G~~~~-~~~~GDL~v~i~v~~~~~f~r~g~dL~~~~~I~l~~al~G~~~~i~tldG~~l~v~i~~g~~i~~g~~~--- 315 (334)
|+|++.+ ++.+|||+|+|++++|+.|+|+|+||++++.|||.|||+|+++.|+||||+ +.|+||++ ++++...
T Consensus 236 G~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldg~-i~v~ip~g--~~~g~~~~i~ 312 (376)
T PRK14280 236 GEGEPGVNGGPAGDLYVVFRVRPHEFFERDGDDIYCEMPLTFAQAALGDEIEVPTLHGK-VKLKIPAG--TQTGTQFRLK 312 (376)
T ss_pred ccccCCCCCCCCcCEEEEEEEecCCCeEEecCCEEEEEecCHHHHhCCCEEEEecCCce-EEEEECCC--CCCCcEEEEc
Confidence 9999864 457899999999999999999999999999999999999999999999997 78999986 3455432
Q ss_pred ---C----CCCCccEEEEEEEEEe
Q 019908 316 ---D----NFTSVNLYLHEYCFLW 332 (334)
Q Consensus 316 ---~----~~~~GdL~v~~~V~~p 332 (334)
+ ...+|||||+|+|.||
T Consensus 313 g~G~p~~~~~~~GDL~v~~~v~~P 336 (376)
T PRK14280 313 GKGVPNVRGYGQGDQYVVVRVVTP 336 (376)
T ss_pred CCCCCCCCCCCCCCEEEEEEEECC
Confidence 2 2357999999999999
No 11
>PRK14278 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=3.5e-73 Score=545.93 Aligned_cols=313 Identities=34% Similarity=0.588 Sum_probs=269.8
Q ss_pred cccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCh---HHHHHHHHHHhhcCCCcccchhcccChhhhhcCC-CCC-C
Q 019908 12 TKYYEILGVSKSATEDELKKAYRKAAMKNHPDKGGDP---EKFKELGQAYEVLSDPEKRDIYDQYGEDALKEGM-GGA-G 86 (334)
Q Consensus 12 ~~~y~iLgv~~~a~~~eik~ayr~la~~~hPd~~~~~---~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~~~~-~~~-~ 86 (334)
+|||+||||+++|+.+|||+|||+||++||||+|+++ ++|++|++||++|+|+++|++||+||++....+. +++ +
T Consensus 3 ~d~y~iLgv~~~a~~~eik~ayr~la~~~hpD~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~YD~~G~~~~~~~~~~~g~~ 82 (378)
T PRK14278 3 RDYYGLLGVSRNASDAEIKRAYRKLARELHPDVNPDEEAQEKFKEISVAYEVLSDPEKRRIVDLGGDPLESAGGGGGGFG 82 (378)
T ss_pred CCcceecCCCCCCCHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHHHHHhchhhhhhhhhccCCccccccCCCCCCC
Confidence 6999999999999999999999999999999999874 7999999999999999999999999976432111 010 1
Q ss_pred -CCCCcchhhccccCCCCCCCCCCCCCCcccccccEEEeeeeceeeeecCcccccccceeeeCCCCCCCCCccCC-cccC
Q 019908 87 -AAHNPFDIFESFFGGGTFGAGGSSRGRRRKQGEDVVHTLKVSLEDLYNGTTKKLSLSRNILCPKCKGKGSKSGA-LGKC 164 (334)
Q Consensus 87 -~~~~~~d~f~~~Fg~~~~~~~~~~~~~~~~~~~di~~~l~~sl~e~~~G~~~~i~~~~~~~C~~C~G~G~~~~~-~~~C 164 (334)
++.++.|+|++|||+++ + +........++.|+.+.|.+||+|+|.|+++++.+++.+.|+.|+|+|..... ..+|
T Consensus 83 ~~f~~~~d~f~~ffgg~g--~-~~~~~~~~~~g~d~~~~l~vtLee~~~G~~~~i~~~~~~~C~~C~G~G~~~~~~~~~C 159 (378)
T PRK14278 83 GGFGGLGDVFEAFFGGGA--A-SRGPRGRVRPGSDSLLRMRLDLEECATGVTKQVTVDTAVLCDRCHGKGTAGDSKPVTC 159 (378)
T ss_pred cCcCchhHHHHHHhCCCC--C-CCCCccCCCCCCCeEEEEEEEHHHhcCCeEEEEEEEeeccCCCCcCccCCCCCCceec
Confidence 12345688999997421 1 11111123568899999999999999999999999999999999999998765 4679
Q ss_pred CCCCCCcEEEEEEeeccceeeEEEEeCCCCccceEEEccCCCCCccCCCceeEEeEEEEEEeccCccCCcEEEEecCcCC
Q 019908 165 YGCQGTGMKITTRQIGLGMIQQMQHVCPECRGAGEVISERDKCPQCKANKVTQEKKVLEVHVEKGMQHGQKIAFEGQADE 244 (334)
Q Consensus 165 ~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~~~~~~v~Ip~G~~~G~~i~l~g~G~~ 244 (334)
+.|+|+|.+...+++++|++++ +++|+.|+|+|+++. ++|+.|+|.+++.+.++++|.||||+++|++|+|+|+|++
T Consensus 160 ~~C~G~G~~~~~~~~~~g~~~~-~~~C~~C~G~G~~~~--~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~~~g~G~~ 236 (378)
T PRK14278 160 DTCGGRGEVQTVQRSFLGQVMT-SRPCPTCRGVGEVIP--DPCHECAGDGRVRARREITVKIPAGVGDGMRIRLAAQGEV 236 (378)
T ss_pred CCccCceEEEEEEeccceeEEE-EEECCCCCccceeeC--CCCCCCCCceeEecceEEEEEECCCCCCCcEEEEccCcCC
Confidence 9999999998888888888875 569999999999986 8899999999999999999999999999999999999998
Q ss_pred CCC-CCCcCEEEEEEEEeCCCceeecCcEEEEEecCHHHHhCCCeEEEecCCCCeEEEEcCCCceecCCccc------C-
Q 019908 245 APD-TITGDIVFILQLKEHPKFKRKFDDLYVDHTLSLTEALCGFQFALTHLDGRQLLIKSNPGEIIKPGIYF------D- 316 (334)
Q Consensus 245 ~~~-~~~GDL~v~i~v~~~~~f~r~g~dL~~~~~I~l~~al~G~~~~i~tldG~~l~v~i~~g~~i~~g~~~------~- 316 (334)
.++ +.+|||+|+|++++|+.|+|+|+||+++++|+|.+|++|+++.|+|||+..+.|+||++ +++|... +
T Consensus 237 ~~~~~~~GDL~v~i~~~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tld~~~i~v~ip~g--~~~g~~lrl~g~G~p 314 (378)
T PRK14278 237 GPGGGPAGDLYVEVHEQPHDVFVRDGDDLHCTVSVPMVDAALGTTVTVEAILDGPSEITIPPG--TQPGSVITLRGRGMP 314 (378)
T ss_pred CCCCCCCCCEEEEEEECcCCCEEEcCCCEEEEEecCHHHHhcCCeEEEecCCCCeEEEEeCCC--cCCCcEEEECCCCCC
Confidence 764 56799999999999999999999999999999999999999999999777799999986 4555433 2
Q ss_pred ---CCCCccEEEEEEEEEe
Q 019908 317 ---NFTSVNLYLHEYCFLW 332 (334)
Q Consensus 317 ---~~~~GdL~v~~~V~~p 332 (334)
...+|||||+|+|.||
T Consensus 315 ~~~~~~~GDL~V~~~V~~P 333 (378)
T PRK14278 315 HLRSGGRGDLHAHVEVVVP 333 (378)
T ss_pred CCCCCCCCCEEEEEEEEcC
Confidence 2358999999999999
No 12
>PRK14282 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=4.4e-73 Score=544.31 Aligned_cols=316 Identities=30% Similarity=0.556 Sum_probs=270.5
Q ss_pred CccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCh-----HHHHHHHHHHhhcCCCcccchhcccChhhhhcCC--
Q 019908 10 NNTKYYEILGVSKSATEDELKKAYRKAAMKNHPDKGGDP-----EKFKELGQAYEVLSDPEKRDIYDQYGEDALKEGM-- 82 (334)
Q Consensus 10 ~~~~~y~iLgv~~~a~~~eik~ayr~la~~~hPd~~~~~-----~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~~~~-- 82 (334)
..+|||++|||+++|+.+|||+|||+||++||||+|++. ++|++|++||++|+||++|++||+||++++....
T Consensus 2 ~~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~g~~~~~~~~~~ 81 (369)
T PRK14282 2 EKKDYYEILGVSRNATQEEIKRAYKRLVKEWHPDRHPENRKEAEQKFKEIQEAYEVLSDPQKRAMYDRFGYVGEQPPYQE 81 (369)
T ss_pred CCCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCccchhHHHHHHHHHHHHHHHhcChhhHHHHhhcCcccccccccc
Confidence 357999999999999999999999999999999998742 7999999999999999999999999987764211
Q ss_pred -CCCCCC-C----Cc-----chhhccccCCCCCCCCCCCCCCcccccccEEEeeeeceeeeecCcccccccceeeeCCCC
Q 019908 83 -GGAGAA-H----NP-----FDIFESFFGGGTFGAGGSSRGRRRKQGEDVVHTLKVSLEDLYNGTTKKLSLSRNILCPKC 151 (334)
Q Consensus 83 -~~~~~~-~----~~-----~d~f~~~Fg~~~~~~~~~~~~~~~~~~~di~~~l~~sl~e~~~G~~~~i~~~~~~~C~~C 151 (334)
++++++ . ++ .|+|++|||+++ +..+....+.++.|+.+.+++||+|+|+|+++++.+++.+.|+.|
T Consensus 82 ~~~~g~~~~~~~~~~~~~~~~d~f~~~fgg~~---~~~~~~~~~~~g~di~~~l~~slee~~~G~~~~i~~~r~~~C~~C 158 (369)
T PRK14282 82 TESGGGFFEDIFKDFENIFNRDIFDIFFGERR---TQEEQREYARRGEDIRYEIEVTLSDLINGAEIPVEYDRYETCPHC 158 (369)
T ss_pred CCCCCcccccccccccccccchhhhHhhcccC---CcccccCCCCCCCCeEEEEEEEHHHhcCCeEEEEEeeecccCCCC
Confidence 111111 1 11 167777776321 111111234568999999999999999999999999999999999
Q ss_pred CCCCCccCC-cccCCCCCCCcEEEEEEeeccceeeEEEEeCCCCccceEEEccCCCCCccCCCceeEEeEEEEEEeccCc
Q 019908 152 KGKGSKSGA-LGKCYGCQGTGMKITTRQIGLGMIQQMQHVCPECRGAGEVISERDKCPQCKANKVTQEKKVLEVHVEKGM 230 (334)
Q Consensus 152 ~G~G~~~~~-~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~~~~~~v~Ip~G~ 230 (334)
+|+|..... ..+|+.|+|+|.++..+++++|++++ +++|+.|.|+|+++. ++|+.|+|.+++.+.++++|+||||+
T Consensus 159 ~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~-~~~C~~C~G~G~~~~--~~C~~C~G~g~v~~~~~l~V~Ip~G~ 235 (369)
T PRK14282 159 GGTGVEPGSGYVTCPKCHGTGRIREERRSFFGVFVS-ERTCERCGGTGKIPG--EYCHECGGSGRIRRRVRTTVKIPAGV 235 (369)
T ss_pred CccCCCCCCCCcCCCCCCCcCEEEEEEEccCcceEE-EEECCCCCCcceeCC--CCCCCCCCceeEEEEEEEEEEeCCCC
Confidence 999998765 46799999999999999999999875 679999999999976 89999999999999999999999999
Q ss_pred cCCcEEEEecCcCCCC-CCCCcCEEEEEEEEeCCCceeecCcEEEEEecCHHHHhCCCeEEEecCCCCeEEEEcCCCcee
Q 019908 231 QHGQKIAFEGQADEAP-DTITGDIVFILQLKEHPKFKRKFDDLYVDHTLSLTEALCGFQFALTHLDGRQLLIKSNPGEII 309 (334)
Q Consensus 231 ~~G~~i~l~g~G~~~~-~~~~GDL~v~i~v~~~~~f~r~g~dL~~~~~I~l~~al~G~~~~i~tldG~~l~v~i~~g~~i 309 (334)
.+|++|+|+|+|++.+ ++.+|||+|+|++++|+.|+|+|+||++++.|||.||++|+++.|+|+||+.+.|+||++ +
T Consensus 236 ~~G~~i~~~g~G~~~~~~~~~GDl~i~i~v~~h~~F~r~G~DL~~~~~Isl~eAl~G~~~~i~~ldG~~i~v~Ip~g--~ 313 (369)
T PRK14282 236 EDGTVLRITGGGNAGYYGGPYGDLYVIVRVRPDPRFKRSGSDLIYDVTIDYLQAILGTTVEVPLPEGGTTMLKIPPG--T 313 (369)
T ss_pred CCCCEEEEecccCCCCCCCCCCCEEEEEEEecCCcEEEecCCEEEEEEeCHHHHhCCCEEEEeCCCCcEEEEEeCCC--c
Confidence 9999999999999864 567899999999999999999999999999999999999999999999999899999987 4
Q ss_pred cCCccc------C----CCCCccEEEEEEEEEee
Q 019908 310 KPGIYF------D----NFTSVNLYLHEYCFLWL 333 (334)
Q Consensus 310 ~~g~~~------~----~~~~GdL~v~~~V~~p~ 333 (334)
+++... + ...+|||||+|+|.+|.
T Consensus 314 ~~g~~iri~GkG~p~~~~~~~GDL~V~~~v~~P~ 347 (369)
T PRK14282 314 QPETVFRLKGKGLPNMRYGRRGDLIVNVHVEIPK 347 (369)
T ss_pred CCCCEEEECCCCCCCCCCCCCCCEEEEEEEECCC
Confidence 555432 2 23579999999999993
No 13
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.7e-74 Score=528.33 Aligned_cols=313 Identities=56% Similarity=0.933 Sum_probs=286.7
Q ss_pred CccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCh-HHHHHHHHHHhhcCCCcccchhcccChhhhhcCCCCCCCC
Q 019908 10 NNTKYYEILGVSKSATEDELKKAYRKAAMKNHPDKGGDP-EKFKELGQAYEVLSDPEKRDIYDQYGEDALKEGMGGAGAA 88 (334)
Q Consensus 10 ~~~~~y~iLgv~~~a~~~eik~ayr~la~~~hPd~~~~~-~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~~~~~~~~~~ 88 (334)
.+..||+||+|+++|+++|||+|||+||++||||+||++ ++|++|++||||||||++|++||+||+++++.+.++++.+
T Consensus 2 ~~~~~y~il~v~~~As~~eikkayrkla~k~HpDkn~~~~ekfkei~~AyevLsd~ekr~~yD~~g~~~~~~g~~~~g~~ 81 (337)
T KOG0712|consen 2 KNTKLYDILGVSPDASEEEIKKAYRKLALKYHPDKNPDAGEKFKEISQAYEVLSDPEKREIYDQYGEEGLQGGGGGGGFG 81 (337)
T ss_pred cccccceeeccCCCcCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHHHHHHHHhhhhhhhcccCCCCCCc
Confidence 578899999999999999999999999999999999988 9999999999999999999999999999997654333322
Q ss_pred CCcchhhccccCCCCCCCCCCCCCCcccccccEEEeeeeceeeeecCcccccccceeeeCCCCCCCCCccCCcccCCCCC
Q 019908 89 HNPFDIFESFFGGGTFGAGGSSRGRRRKQGEDVVHTLKVSLEDLYNGTTKKLSLSRNILCPKCKGKGSKSGALGKCYGCQ 168 (334)
Q Consensus 89 ~~~~d~f~~~Fg~~~~~~~~~~~~~~~~~~~di~~~l~~sl~e~~~G~~~~i~~~~~~~C~~C~G~G~~~~~~~~C~~C~ 168 (334)
. |++||+.+ +.++ ++..++.|+.+.+.+||+|+|.|.++++.++++.+|+.|+|+|..++...+|+.|.
T Consensus 82 ~-----f~~~F~~g---~~~~---~~~~rg~~~~~~~~~~Le~~y~G~s~kl~l~~~~iCs~C~GsGgksg~~~~C~~C~ 150 (337)
T KOG0712|consen 82 G-----FSQFFGFG---GNGG---RGRQRGKDVVHQLKVTLEELYMGKSKKLFLSRNFICSKCSGSGGKSGSAPKCTTCR 150 (337)
T ss_pred c-----HHHhccCC---CcCc---cccccCCCceEEEEEEHHHhhcCCccceecccCccCCcCCCCCCCCCCCCCCCCCC
Confidence 2 77777622 1121 12223999999999999999999999999999999999999999999888999999
Q ss_pred CCcEEEEEEeeccceeeEEEEeCCCCccceEEEccCCCCCccCCCceeEEeEEEEEEeccCccCCcEEEEecCcCCCCCC
Q 019908 169 GTGMKITTRQIGLGMIQQMQHVCPECRGAGEVISERDKCPQCKANKVTQEKKVLEVHVEKGMQHGQKIAFEGQADEAPDT 248 (334)
Q Consensus 169 G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~~~~~~v~Ip~G~~~G~~i~l~g~G~~~~~~ 248 (334)
|+|..+..++++|||.|+++..|..|+|+|.++..++.|+.|.|.+++.+.+.++|.|++|+.++++|.+.|++++.++.
T Consensus 151 GsGv~~~~~~~gPg~~qs~q~~C~~C~G~G~~~~~kd~C~~C~G~~~v~~kkil~v~V~~g~~~~~ki~f~geadea~g~ 230 (337)
T KOG0712|consen 151 GSGVQTRTRQMGPGMVQSPQLVCDSCNGSGETISLKDRCKTCSGAKVVREKKILEVHVEPGMPHGQKITFKGEADEAPGT 230 (337)
T ss_pred CCCceeEEEeccccccccceeEeccCCCccccccccccCcccccchhhhhhheeeccccCCCcccceeeeeeeeeecCCC
Confidence 99999999999999999999999999999999888999999999999999999999999999999999999999999988
Q ss_pred CCcCEEEEEEEEeCCCceeecCcEEEEEecCHHHHhCCCeEEEecCCCCeEEEEcCCCceecCCccc------CC---CC
Q 019908 249 ITGDIVFILQLKEHPKFKRKFDDLYVDHTLSLTEALCGFQFALTHLDGRQLLIKSNPGEIIKPGIYF------DN---FT 319 (334)
Q Consensus 249 ~~GDL~v~i~v~~~~~f~r~g~dL~~~~~I~l~~al~G~~~~i~tldG~~l~v~i~~g~~i~~g~~~------~~---~~ 319 (334)
.+||+++.|..++|+.|.|+++||++..+|+|.||++|+.+.+.||||+.+.+.++||+||+|+.++ || ..
T Consensus 231 ~pgD~vl~i~~k~h~~F~Rrg~dL~~~~~i~l~eal~G~~~~~~~ldGr~l~~~~~pg~vi~~~~~~~v~~~gmp~~~~~ 310 (337)
T KOG0712|consen 231 KPGDVVLLIDQKEHPGFDRRGSDLYRKLTISLVEALCGFQRVWETLDGRLLKLSSKPGEVISPGDTKRVEGEGMPIFRNP 310 (337)
T ss_pred cCccEEEEecccccccceecccccceeeecchhhccccceEEEEccCCceEEEecCCCceeChhHEEeecCCCcccccCC
Confidence 8999999999999999999999999999999999999999999999999999999999999998765 22 23
Q ss_pred CccEEEEEEEEEee
Q 019908 320 SVNLYLHEYCFLWL 333 (334)
Q Consensus 320 ~GdL~v~~~V~~p~ 333 (334)
+|||||+|+|+||-
T Consensus 311 ~g~lyi~~~v~fp~ 324 (337)
T KOG0712|consen 311 KGDLYIKFEVKFPK 324 (337)
T ss_pred CCcEEEEEEEEcCC
Confidence 89999999999994
No 14
>PRK14297 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.6e-72 Score=542.31 Aligned_cols=314 Identities=36% Similarity=0.675 Sum_probs=271.3
Q ss_pred ccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCh----HHHHHHHHHHhhcCCCcccchhcccChhhhhcCCC-C-
Q 019908 11 NTKYYEILGVSKSATEDELKKAYRKAAMKNHPDKGGDP----EKFKELGQAYEVLSDPEKRDIYDQYGEDALKEGMG-G- 84 (334)
Q Consensus 11 ~~~~y~iLgv~~~a~~~eik~ayr~la~~~hPd~~~~~----~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~~~~~-~- 84 (334)
.+|||++|||+++|+.+|||+|||+||++||||+|++. ++|++|++||++|+||.+|++||+||+++++.+.+ +
T Consensus 3 ~~d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~G~~~~~~~~~~~~ 82 (380)
T PRK14297 3 SKDYYEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKGNKEAEEKFKEINEAYQVLSDPQKKAQYDQFGTADFNGAGGFGS 82 (380)
T ss_pred CCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcCHhhhCchhhcCcccccccCCCCC
Confidence 47999999999999999999999999999999999742 79999999999999999999999999987753211 0
Q ss_pred -C-CC-----CCCcchhhccccCCCCCCCCCCCCCCcccccccEEEeeeeceeeeecCcccccccceeeeCCCCCCCCCc
Q 019908 85 -A-GA-----AHNPFDIFESFFGGGTFGAGGSSRGRRRKQGEDVVHTLKVSLEDLYNGTTKKLSLSRNILCPKCKGKGSK 157 (334)
Q Consensus 85 -~-~~-----~~~~~d~f~~~Fg~~~~~~~~~~~~~~~~~~~di~~~l~~sl~e~~~G~~~~i~~~~~~~C~~C~G~G~~ 157 (334)
+ ++ ..++.|+|++|||++ +++. ++....+.++.|+.+.|++||+|+|+|+++++.+.+.+.|+.|+|+|..
T Consensus 83 ~~~~~~~~~~~~~~~d~f~~~fgg~-~g~~-~~~~~~~~kg~di~~~l~vsLee~~~G~~~~i~~~r~~~C~~C~G~G~~ 160 (380)
T PRK14297 83 GGFGGFDFSDMGGFGDIFDSFFGGG-FGSS-SRRRNGPQRGADIEYTINLTFEEAVFGVEKEISVTRNENCETCNGTGAK 160 (380)
T ss_pred CCCCCcCcccccchhHHHHHHhccC-cccc-ccccCCCCCCCCEEEEEEEEHHHhcCCeEEEEEeeeeccCCCccccccc
Confidence 1 11 023568899999742 1111 1111233568899999999999999999999999999999999999998
Q ss_pred cCC-cccCCCCCCCcEEEEEEeeccceeeEEEEeCCCCccceEEEccCCCCCccCCCceeEEeEEEEEEeccCccCCcEE
Q 019908 158 SGA-LGKCYGCQGTGMKITTRQIGLGMIQQMQHVCPECRGAGEVISERDKCPQCKANKVTQEKKVLEVHVEKGMQHGQKI 236 (334)
Q Consensus 158 ~~~-~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~~~~~~v~Ip~G~~~G~~i 236 (334)
.+. ..+|+.|+|+|.+...+++++|++++ +.+|+.|.|+|+++. .+|..|+|.|++.+.++++|.||||+++|++|
T Consensus 161 ~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~-~~~C~~C~G~G~~~~--~~C~~C~G~g~v~~~~~i~V~Ip~G~~~G~~I 237 (380)
T PRK14297 161 PGTSPKTCDKCGGTGQIRVQRNTPLGSFVS-TTTCDKCGGSGKVIE--DPCNKCHGKGKVRKNRKIKVNVPAGVDTGNVI 237 (380)
T ss_pred CCCcCccCCCccCeEEEEEEEEcCCceeEE-EEeCCCCCCCceEcC--CCCCCCCCCeEEEeEeEEEEEeCCCCCCCcEE
Confidence 765 56799999999999889999998764 789999999999986 89999999999999999999999999999999
Q ss_pred EEecCcCCCC-CCCCcCEEEEEEEEeCCCceeecCcEEEEEecCHHHHhCCCeEEEecCCCCeEEEEcCCCceecCCccc
Q 019908 237 AFEGQADEAP-DTITGDIVFILQLKEHPKFKRKFDDLYVDHTLSLTEALCGFQFALTHLDGRQLLIKSNPGEIIKPGIYF 315 (334)
Q Consensus 237 ~l~g~G~~~~-~~~~GDL~v~i~v~~~~~f~r~g~dL~~~~~I~l~~al~G~~~~i~tldG~~l~v~i~~g~~i~~g~~~ 315 (334)
+|+|+|++.+ +..+|||||+|+|.+|+.|+|+|+||+++++|+|.|||+|+++.|+||||+ +.|+||++ +++|...
T Consensus 238 ~l~g~G~~~~~~~~~GDL~v~v~v~~h~~f~R~G~DL~~~~~Isl~eAl~G~~~~i~~ldg~-~~v~ip~g--~~~g~~~ 314 (380)
T PRK14297 238 PLRGQGEHGKNGGPTGDLYINIRVAPHKTFKRKGFDIYIDKHISFAKAALGTEIKVPTVDGE-VKYEVPAG--TQPGTVF 314 (380)
T ss_pred EEecCccCCCCCCCCccEEEEEEEcCCCCEEEeCCCEEEEEEeCHHHHhCCCcEEEEcCCCc-EEEEECCC--cCCCCEE
Confidence 9999999864 456899999999999999999999999999999999999999999999997 78999987 4565533
Q ss_pred ------C----CCCCccEEEEEEEEEe
Q 019908 316 ------D----NFTSVNLYLHEYCFLW 332 (334)
Q Consensus 316 ------~----~~~~GdL~v~~~V~~p 332 (334)
+ +..+|||||+|+|.||
T Consensus 315 ri~g~G~p~~~~~~~GDL~v~~~v~~P 341 (380)
T PRK14297 315 RLKGKGVPRVNSTGRGNQYVTVIVDIP 341 (380)
T ss_pred EEcCCCcCCCCCCCCCcEEEEEEEEcC
Confidence 2 2357999999999999
No 15
>PRK14285 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.3e-72 Score=539.74 Aligned_cols=310 Identities=36% Similarity=0.642 Sum_probs=266.3
Q ss_pred ccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCh----HHHHHHHHHHhhcCCCcccchhcccChhhhhcCCC--C
Q 019908 11 NTKYYEILGVSKSATEDELKKAYRKAAMKNHPDKGGDP----EKFKELGQAYEVLSDPEKRDIYDQYGEDALKEGMG--G 84 (334)
Q Consensus 11 ~~~~y~iLgv~~~a~~~eik~ayr~la~~~hPd~~~~~----~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~~~~~--~ 84 (334)
.+|||++|||+++|+.+|||+|||+||++||||+|++. ++|++|++||++|+|+++|+.||+||++++..+.+ +
T Consensus 2 ~~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yd~~g~~~~~~~~~~~~ 81 (365)
T PRK14285 2 KRDYYEILGLSKGASKDEIKKAYRKIAIKYHPDKNKGNKEAESIFKEATEAYEVLIDDNKRAQYDRFGHTAFEGGGGFEG 81 (365)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHcCcchhHHHHhcCcchhccCCCccc
Confidence 37999999999999999999999999999999999742 78999999999999999999999999987753211 1
Q ss_pred C-CC-------CCCcchhhccccCCCCCCCCCCCCCCcccccccEEEeeeeceeeeecCcccccccceeeeCCCCCCCCC
Q 019908 85 A-GA-------AHNPFDIFESFFGGGTFGAGGSSRGRRRKQGEDVVHTLKVSLEDLYNGTTKKLSLSRNILCPKCKGKGS 156 (334)
Q Consensus 85 ~-~~-------~~~~~d~f~~~Fg~~~~~~~~~~~~~~~~~~~di~~~l~~sl~e~~~G~~~~i~~~~~~~C~~C~G~G~ 156 (334)
. ++ +.++.|+|++|||++. + +.+.+.+.++.|+.+.|++||+|+|+|+++++.+++.+.|+.|+|+|.
T Consensus 82 ~~~g~~~~~~~~~~~~d~f~~~fgg~~---~-~~~~~~~~~g~di~~~l~vtlee~~~G~~~~i~~~r~~~C~~C~G~G~ 157 (365)
T PRK14285 82 FSGGFSGFSDIFEDFGDIFDSFFTGNR---G-QDKNRKHEKGQDLTYQIEISLEDAYLGYKNNINITRNMLCESCLGKKS 157 (365)
T ss_pred cCCCccccccccccHHHHHHHhhcCCc---C-CCCCcCCCCCCCEEEEEEEEHHHhhCCeEEEEEeeecccCCCCCCccc
Confidence 0 11 1235588999987421 1 101122356889999999999999999999999999999999999999
Q ss_pred ccCC-cccCCCCCCCcEEEEEEeeccceeeEEEEeCCCCccceEEEccCCCCCccCCCceeEEeEEEEEEeccCccCCcE
Q 019908 157 KSGA-LGKCYGCQGTGMKITTRQIGLGMIQQMQHVCPECRGAGEVISERDKCPQCKANKVTQEKKVLEVHVEKGMQHGQK 235 (334)
Q Consensus 157 ~~~~-~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~~~~~~v~Ip~G~~~G~~ 235 (334)
.... ..+|+.|+|+|.++. ++|++ +++.+|+.|.|+|+++. ++|+.|+|.+++.+.++++|+||||+++|++
T Consensus 158 ~~~~~~~~C~~C~G~G~~~~----~~G~~-~~~~~C~~C~G~G~~~~--~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~ 230 (365)
T PRK14285 158 EKGTSPSICNMCNGSGRVMQ----GGGFF-RVTTTCPKCYGNGKIIS--NPCKSCKGKGSLKKKETIELKIPAGIDDNQQ 230 (365)
T ss_pred CCCCCCccCCCccCceeEEe----cCcee-EEeeecCCCCCcccccC--CCCCCCCCCCEEeccEEEEEEECCCCCCCCE
Confidence 8765 467999999998764 56777 57899999999999986 8999999999999999999999999999999
Q ss_pred EEEecCcCCCCC-CCCcCEEEEEEEEeCCCceeecCcEEEEEecCHHHHhCCCeEEEecCCCCeEEEEcCCCceecCCcc
Q 019908 236 IAFEGQADEAPD-TITGDIVFILQLKEHPKFKRKFDDLYVDHTLSLTEALCGFQFALTHLDGRQLLIKSNPGEIIKPGIY 314 (334)
Q Consensus 236 i~l~g~G~~~~~-~~~GDL~v~i~v~~~~~f~r~g~dL~~~~~I~l~~al~G~~~~i~tldG~~l~v~i~~g~~i~~g~~ 314 (334)
|+|+|+|++.++ +.+|||+|+|++++|+.|+|+|+||+++++|||.|||+|+++.|+||||+.+.|+||++ ++++..
T Consensus 231 i~~~g~G~~~~~~~~~GDL~v~i~v~~h~~f~R~G~dL~~~~~Isl~eAl~G~~~~i~tldG~~v~V~Ip~g--~~~g~~ 308 (365)
T PRK14285 231 IKMRGKGSVNPDNQQYGDLYIKILIKPHKIFKRNGKDLYATLPISFTQAALGKEIKIQTIASKKIKIKIPKG--TENDEQ 308 (365)
T ss_pred EEEeeccccCCCCCCCCCEEEEEEEecCCCeEEeccceEEEEecCHHHHhCCCEEEEECCCCCEEEEEeCCC--cCCCcE
Confidence 999999999764 56899999999999999999999999999999999999999999999999899999986 345543
Q ss_pred c------CC----CCCccEEEEEEEEEee
Q 019908 315 F------DN----FTSVNLYLHEYCFLWL 333 (334)
Q Consensus 315 ~------~~----~~~GdL~v~~~V~~p~ 333 (334)
. +| ..+|||||+|+|.+|.
T Consensus 309 irl~GkG~p~~~~~~~GDL~V~~~v~~P~ 337 (365)
T PRK14285 309 IIIKNEGMPILHTEKFGNLILIIKIKTPK 337 (365)
T ss_pred EEECCCCccCCCCCCCCCEEEEEEEECCC
Confidence 2 22 2479999999999994
No 16
>PRK14279 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=4.3e-72 Score=540.33 Aligned_cols=311 Identities=32% Similarity=0.571 Sum_probs=258.6
Q ss_pred CCccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-h---HHHHHHHHHHhhcCCCcccchhcccChhhhhcCCC-
Q 019908 9 SNNTKYYEILGVSKSATEDELKKAYRKAAMKNHPDKGGD-P---EKFKELGQAYEVLSDPEKRDIYDQYGEDALKEGMG- 83 (334)
Q Consensus 9 ~~~~~~y~iLgv~~~a~~~eik~ayr~la~~~hPd~~~~-~---~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~~~~~- 83 (334)
+..+|||++|||+++|+.+|||+|||+||++||||+|++ + ++|++|++||+||+||+||++||+||+++...++.
T Consensus 6 ~~~~Dyy~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vLsD~~KR~~YD~~G~~~~~~g~~~ 85 (392)
T PRK14279 6 WVEKDFYKELGVSSDASAEEIKKAYRKLARELHPDANPGDPAAEERFKAVSEAHDVLSDPAKRKEYDETRRLFAGGGFGG 85 (392)
T ss_pred hcccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhcchhhhhHHHHhhhhcccccccc
Confidence 346899999999999999999999999999999999983 2 89999999999999999999999999743211110
Q ss_pred -------CCCC--------CCCcc---------------hhhccccCCCCCCCCCCCCCCcccccccEEEeeeeceeeee
Q 019908 84 -------GAGA--------AHNPF---------------DIFESFFGGGTFGAGGSSRGRRRKQGEDVVHTLKVSLEDLY 133 (334)
Q Consensus 84 -------~~~~--------~~~~~---------------d~f~~~Fg~~~~~~~~~~~~~~~~~~~di~~~l~~sl~e~~ 133 (334)
+.++ ..+++ ++|++||+++ +++.+...+.++.|+.+.|+|||+|+|
T Consensus 86 ~~~~~~~~~~g~~~~~~~~~~d~~~~f~~~~~~~~~~f~d~f~~~fg~~----~~~~~~~~~~~g~di~~~l~ltLee~~ 161 (392)
T PRK14279 86 RRFDGGGGFGGFGTGGDGAEFNLNDLFDAAGRGGGGGIGDLFGGLFNRG----GGSARPSRPRRGNDLETETTLDFVEAA 161 (392)
T ss_pred ccccCCCCCCCccccccccCcChhhhhcccccccccchhhhhhhhhcCC----CcccccCCCCCCCCeEEEEEEEHHHHh
Confidence 0001 11222 3344444321 111112234568899999999999999
Q ss_pred cCcccccccceeeeCCCCCCCCCccCC-cccCCCCCCCcEEEEEEeeccceeeEEEEeCCCCccceEEEccCCCCCccCC
Q 019908 134 NGTTKKLSLSRNILCPKCKGKGSKSGA-LGKCYGCQGTGMKITTRQIGLGMIQQMQHVCPECRGAGEVISERDKCPQCKA 212 (334)
Q Consensus 134 ~G~~~~i~~~~~~~C~~C~G~G~~~~~-~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G 212 (334)
+|+++++.+.+.+.|++|+|+|..... ..+|+.|+|+|.++... |++ +++++|+.|.|+|+++. .+|+.|+|
T Consensus 162 ~G~~~~v~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~----g~~-~~~~~C~~C~G~G~~i~--~~C~~C~G 234 (392)
T PRK14279 162 KGVTMPLRLTSPAPCTTCHGSGARPGTSPKVCPTCNGSGVISRNQ----GAF-GFSEPCTDCRGTGSIIE--DPCEECKG 234 (392)
T ss_pred CCeEEEEeeeccccCCCCccccccCCCCCCCCCCCcceEEEEEEe----cce-EEEEecCCCCceeEEeC--CcCCCCCC
Confidence 999999999999999999999998765 46799999999876643 344 35699999999999986 89999999
Q ss_pred CceeEEeEEEEEEeccCccCCcEEEEecCcCCCC-CCCCcCEEEEEEEEeCCCceeecCcEEEEEecCHHHHhCCCeEEE
Q 019908 213 NKVTQEKKVLEVHVEKGMQHGQKIAFEGQADEAP-DTITGDIVFILQLKEHPKFKRKFDDLYVDHTLSLTEALCGFQFAL 291 (334)
Q Consensus 213 ~g~~~~~~~~~v~Ip~G~~~G~~i~l~g~G~~~~-~~~~GDL~v~i~v~~~~~f~r~g~dL~~~~~I~l~~al~G~~~~i 291 (334)
.+++.+.++++|.||||+++|++|+|+|+|++.+ +..+|||+|+|+|++|+.|+|+|+||++++.|+|.+|++|+++.|
T Consensus 235 ~g~v~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDL~i~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~v 314 (392)
T PRK14279 235 TGVTTRTRTINVRIPPGVEDGQRIRLAGQGEAGLRGAPSGDLYVTVHVRPDKVFGRDGDDLTVTVPVSFTELALGSTLSV 314 (392)
T ss_pred CeEEEEeeeeEEEeCCCCCCCcEEEEeCCccCCCCCCCCCCEEEEEEEecCCcceeecCcEEEEEEccHHHHcCCceEEE
Confidence 9999999999999999999999999999999875 456799999999999999999999999999999999999999999
Q ss_pred ecCCCCeEEEEcCCCceecCCccc------C---CCCCccEEEEEEEEEee
Q 019908 292 THLDGRQLLIKSNPGEIIKPGIYF------D---NFTSVNLYLHEYCFLWL 333 (334)
Q Consensus 292 ~tldG~~l~v~i~~g~~i~~g~~~------~---~~~~GdL~v~~~V~~p~ 333 (334)
+||||+ +.|+||++ ++++... + ++.+|||||+|+|.||.
T Consensus 315 ~~ldg~-i~v~Ip~g--~~~g~~iri~g~G~p~~~~~~GDL~I~~~v~~P~ 362 (392)
T PRK14279 315 PTLDGP-VGVKVPAG--TADGRILRVRGRGVPKRSGGAGDLLVTVKVAVPP 362 (392)
T ss_pred EcCCce-EEEEECCC--CCCCCEEEECCCCCCCCCCCCCCEEEEEEEECCC
Confidence 999998 88999987 4555433 2 34689999999999993
No 17
>PRK14281 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=5.4e-72 Score=540.84 Aligned_cols=316 Identities=35% Similarity=0.662 Sum_probs=269.6
Q ss_pred cccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCh----HHHHHHHHHHhhcCCCcccchhcccChhhhhcCC--CCC
Q 019908 12 TKYYEILGVSKSATEDELKKAYRKAAMKNHPDKGGDP----EKFKELGQAYEVLSDPEKRDIYDQYGEDALKEGM--GGA 85 (334)
Q Consensus 12 ~~~y~iLgv~~~a~~~eik~ayr~la~~~hPd~~~~~----~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~~~~--~~~ 85 (334)
+|||+||||+++|+.+|||+|||+||++||||+|++. ++|++|++||++|+|+.+|+.||+||+++++.+. +++
T Consensus 3 ~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~g~~~~~~~~~~~~~ 82 (397)
T PRK14281 3 RDYYEVLGVSRSADKDEIKKAYRKLALKYHPDKNPDNKEAEEHFKEVNEAYEVLSNDDKRRRYDQFGHAGVGSSAASGGG 82 (397)
T ss_pred CChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhhhhhhhhhhhhccchhhccccccCCC
Confidence 6999999999999999999999999999999999742 7999999999999999999999999998775321 111
Q ss_pred C----CCCCcchh---hccccCCCC-CC-----------CCCCCCC--CcccccccEEEeeeeceeeeecCcccccccce
Q 019908 86 G----AAHNPFDI---FESFFGGGT-FG-----------AGGSSRG--RRRKQGEDVVHTLKVSLEDLYNGTTKKLSLSR 144 (334)
Q Consensus 86 ~----~~~~~~d~---f~~~Fg~~~-~~-----------~~~~~~~--~~~~~~~di~~~l~~sl~e~~~G~~~~i~~~~ 144 (334)
+ ++.++.++ |++|||+++ ++ +++.... +.+.++.|+.+.|++||+|+|+|+++++.+++
T Consensus 83 ~~~~~~~~~~~d~f~~f~~~Fgg~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~di~~~l~vtLee~~~G~~~~i~~~r 162 (397)
T PRK14281 83 PGYGGGGGDFNDIFSAFNDMFGGGARRGGGSPFGFEDVFGGGGRRRRASAGIPGTDLKIRLKLTLEEIAKGVEKTLKIKK 162 (397)
T ss_pred CCCCcCCCCHHHHHHHHHHHhCCCcccccccccccccccCCCcccccccCCCCCCCEEEEEEeEHHHHhCCeEEEEEEEe
Confidence 0 11233444 457887421 00 0110001 12246889999999999999999999999999
Q ss_pred eeeCCCCCCCCCccCCcccCCCCCCCcEEEEEEeeccceeeEEEEeCCCCccceEEEccCCCCCccCCCceeEEeEEEEE
Q 019908 145 NILCPKCKGKGSKSGALGKCYGCQGTGMKITTRQIGLGMIQQMQHVCPECRGAGEVISERDKCPQCKANKVTQEKKVLEV 224 (334)
Q Consensus 145 ~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~~~~~~v 224 (334)
.+.|+.|+|+|.......+|+.|+|+|.+....++++|++++ +++|+.|.|+|+++. ++|+.|+|.+++.+.++++|
T Consensus 163 ~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~-~~~C~~C~G~G~~~~--~~C~~C~G~g~v~~~~~~~V 239 (397)
T PRK14281 163 QVPCKECNGTGSKTGATETCPTCHGSGEVRQASKTMFGQFVN-ITACPTCGGEGRVVK--DRCPACYGEGIKQGEVTVKV 239 (397)
T ss_pred eecCCCCCCcccCCCCCccCCCCCCCcEEEEEEecccceEEE-EEecCCCcceeeeeC--CCCCCCCCCccEecceEEEE
Confidence 999999999999887667899999999998888899998875 679999999999986 89999999999999999999
Q ss_pred EeccCccCCcEEEEecCcCCCC-CCCCcCEEEEEEEEeCCCceeecCcEEEEEecCHHHHhCCCeEEEecCCCCeEEEEc
Q 019908 225 HVEKGMQHGQKIAFEGQADEAP-DTITGDIVFILQLKEHPKFKRKFDDLYVDHTLSLTEALCGFQFALTHLDGRQLLIKS 303 (334)
Q Consensus 225 ~Ip~G~~~G~~i~l~g~G~~~~-~~~~GDL~v~i~v~~~~~f~r~g~dL~~~~~I~l~~al~G~~~~i~tldG~~l~v~i 303 (334)
+||||+++|++|+|+|+|++.+ ++.+|||+|+|++++|+.|+|+|+||++++.|||.|||+|+++.|+||||+ +.|+|
T Consensus 240 ~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDL~i~i~~~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldg~-i~v~i 318 (397)
T PRK14281 240 TVPAGVQDGNYLTLRGQGNAGPRGGAPGDLIVVIEEKPHELFVRNGDDVIYNLAVSYPDLVLGTKVEVPTLDGA-VKLTI 318 (397)
T ss_pred ecCCCCCCCCEEEEecccccCCCCCCCCcEEEEEEEcCCCCeEEecCCEEEEEEecHHHHhcCCeEEeecCCcc-EEEEe
Confidence 9999999999999999999975 467999999999999999999999999999999999999999999999997 88999
Q ss_pred CCCceecCCccc------CC----CCCccEEEEEEEEEee
Q 019908 304 NPGEIIKPGIYF------DN----FTSVNLYLHEYCFLWL 333 (334)
Q Consensus 304 ~~g~~i~~g~~~------~~----~~~GdL~v~~~V~~p~ 333 (334)
|++ +++|... +| ..+|||||+|+|.||-
T Consensus 319 p~g--~~~G~~~ri~g~G~P~~~~~~~GDL~V~~~V~~P~ 356 (397)
T PRK14281 319 PAG--TQPETMLRIPGKGIGHLRGSGRGDQYVRVNVFVPK 356 (397)
T ss_pred CCc--cCCCcEEEEcCCCCCCCCCCCCCCEEEEEEEEcCC
Confidence 987 4565543 22 3579999999999993
No 18
>PRK14284 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=7.9e-72 Score=539.10 Aligned_cols=312 Identities=33% Similarity=0.598 Sum_probs=261.9
Q ss_pred cccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCh----HHHHHHHHHHhhcCCCcccchhcccChhhhhcCCC--CC
Q 019908 12 TKYYEILGVSKSATEDELKKAYRKAAMKNHPDKGGDP----EKFKELGQAYEVLSDPEKRDIYDQYGEDALKEGMG--GA 85 (334)
Q Consensus 12 ~~~y~iLgv~~~a~~~eik~ayr~la~~~hPd~~~~~----~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~~~~~--~~ 85 (334)
.|||+||||+++|+.+|||+|||+||++||||+|++. ++|++|++||++|+|+++|+.||+||++++..+.+ ++
T Consensus 1 ~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g~~~g~~~~~~ 80 (391)
T PRK14284 1 MDYYTILGVSKTASPEEIKKAYRKLAVKYHPDKNPGDAEAEKRFKEVSEAYEVLSDAQKRESYDRYGKDGPFAGAGGFGG 80 (391)
T ss_pred CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhcCHHHHHHHHhccccccccccCCcCC
Confidence 4899999999999999999999999999999999842 79999999999999999999999999887643211 11
Q ss_pred CCC------------------CCcchhhccccCCCCCCCCCCCCCCcccccccEEEeeeeceeeeecCcccccccceeee
Q 019908 86 GAA------------------HNPFDIFESFFGGGTFGAGGSSRGRRRKQGEDVVHTLKVSLEDLYNGTTKKLSLSRNIL 147 (334)
Q Consensus 86 ~~~------------------~~~~d~f~~~Fg~~~~~~~~~~~~~~~~~~~di~~~l~~sl~e~~~G~~~~i~~~~~~~ 147 (334)
+++ ..+.|+|++||++.+...++.....++.++.|+.+.|.+||+|+|+|+++++.+.+.+.
T Consensus 81 ~g~~~~~~~~~~~~~~f~~~~~~~~d~f~~~fgg~g~~~~~~~~~~~~~~g~d~~~~l~vslee~~~G~~~~i~~~r~~~ 160 (391)
T PRK14284 81 AGMGNMEDALRTFMGAFGGEFGGGGSFFEGLFGGLGEAFGMRGGPAGARQGASKKVHITLSFEEAAKGVEKELLVSGYKS 160 (391)
T ss_pred CCcCcccchhhhccccccccccccccchhhhccCccccccccccCCCcCCCCCeEEEEEEEHHHHhCCeeEEEEEeeecc
Confidence 111 01136677777642110011111122356889999999999999999999999999999
Q ss_pred CCCCCCCCCccCC-cccCCCCCCCcEEEEEEeeccceeeEEEEeCCCCccceEEEccCCCCCccCCCceeEEeEEEEEEe
Q 019908 148 CPKCKGKGSKSGA-LGKCYGCQGTGMKITTRQIGLGMIQQMQHVCPECRGAGEVISERDKCPQCKANKVTQEKKVLEVHV 226 (334)
Q Consensus 148 C~~C~G~G~~~~~-~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~~~~~~v~I 226 (334)
|++|+|+|..... ..+|+.|+|+|.++... |+++ ++.+|+.|.|+|+++. ++|+.|+|.+++.+.++++|+|
T Consensus 161 C~~C~G~G~~~~~~~~~C~~C~G~G~v~~~~----G~~~-~~~~C~~C~G~G~~~~--~~C~~C~G~g~v~~~~~l~V~I 233 (391)
T PRK14284 161 CDACSGSGANSSQGIKVCDRCKGSGQVVQSR----GFFS-MASTCPECGGEGRVIT--DPCSVCRGQGRIKDKRSVHVHI 233 (391)
T ss_pred CCCCcccccCCCCCCeecCccCCeeEEEEEe----ceEE-EEEECCCCCCCCcccC--CcCCCCCCcceecceEEEEEEE
Confidence 9999999998765 46799999999877533 5554 6789999999999986 8999999999999999999999
Q ss_pred ccCccCCcEEEEecCcCCCC-CCCCcCEEEEEEEEeCCCceeecCcEEEEEecCHHHHhCCCeEEEecCC-CCeEEEEcC
Q 019908 227 EKGMQHGQKIAFEGQADEAP-DTITGDIVFILQLKEHPKFKRKFDDLYVDHTLSLTEALCGFQFALTHLD-GRQLLIKSN 304 (334)
Q Consensus 227 p~G~~~G~~i~l~g~G~~~~-~~~~GDL~v~i~v~~~~~f~r~g~dL~~~~~I~l~~al~G~~~~i~tld-G~~l~v~i~ 304 (334)
|||+++|++|+|+|+|++.+ ++.+|||||+|++++|+.|+|+|+||+++++|||.+|++|+++.|+||| |..+.|+||
T Consensus 234 p~G~~~G~~i~~~g~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~v~tld~g~~i~v~Ip 313 (391)
T PRK14284 234 PAGVDSGMRLKMEGYGDAGQNGAPAGDLYVFIDVEPHPVFERRGDDLILELPIGFVDAALGMKKEIPTLLKEGTCRLTIP 313 (391)
T ss_pred CCCCCCCCEEEEeccccCCCCCCCCCCEEEEEEEecCCCceeecCCEEEEEEecHHHHhCCCeEEEeecCCCcEEEEEEC
Confidence 99999999999999999976 5678999999999999999999999999999999999999999999999 667899999
Q ss_pred CCceecCCccc------C----CCCCccEEEEEEEEEe
Q 019908 305 PGEIIKPGIYF------D----NFTSVNLYLHEYCFLW 332 (334)
Q Consensus 305 ~g~~i~~g~~~------~----~~~~GdL~v~~~V~~p 332 (334)
++ ++++... + ...+|||||+|+|.+|
T Consensus 314 ~g--~~~g~~~~i~g~G~p~~~~~~~GDL~V~~~v~~P 349 (391)
T PRK14284 314 EG--IQSGTILKVRGQGFPNVHGKGRGDLLVRISVETP 349 (391)
T ss_pred Cc--cCCCeEEEECCCCCCCCCCCCCCcEEEEEEEECC
Confidence 76 4555433 2 2357999999999999
No 19
>PRK14301 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=2.1e-71 Score=532.69 Aligned_cols=309 Identities=33% Similarity=0.616 Sum_probs=262.5
Q ss_pred ccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCh----HHHHHHHHHHhhcCCCcccchhcccChhhhhcCCCCCC
Q 019908 11 NTKYYEILGVSKSATEDELKKAYRKAAMKNHPDKGGDP----EKFKELGQAYEVLSDPEKRDIYDQYGEDALKEGMGGAG 86 (334)
Q Consensus 11 ~~~~y~iLgv~~~a~~~eik~ayr~la~~~hPd~~~~~----~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~~~~~~~~ 86 (334)
.+|||++|||+++|+.+|||+|||+||++||||+|++. ++|++|++||+||+||.+|+.||+||+++++.+.++++
T Consensus 3 ~~~~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~g~~g~~~~~~~~g 82 (373)
T PRK14301 3 QRDYYEVLGVSRDASEDEIKKAYRKLALQYHPDRNPDNPEAEQKFKEAAEAYEVLRDAEKRARYDRFGHAGVNGNGGFGG 82 (373)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHhCCCcCCCChHHHHHHHHHHHHHHHhcchhhhhhhhhccccccccCCCCCC
Confidence 47999999999999999999999999999999999742 69999999999999999999999999987753211111
Q ss_pred --C----CCCcchhhccccCCCCCCCCCCCCCCcccccccEEEeeeeceeeeecCcccccccceeeeCCCCCCCCCccCC
Q 019908 87 --A----AHNPFDIFESFFGGGTFGAGGSSRGRRRKQGEDVVHTLKVSLEDLYNGTTKKLSLSRNILCPKCKGKGSKSGA 160 (334)
Q Consensus 87 --~----~~~~~d~f~~~Fg~~~~~~~~~~~~~~~~~~~di~~~l~~sl~e~~~G~~~~i~~~~~~~C~~C~G~G~~~~~ 160 (334)
+ +.+|.|+|++|||+++. ++. +..++.++.|+.+.|.+||+|+|+|+++++.+.+.+.|+.|+|+|.....
T Consensus 83 ~~~~~~~~~~f~d~f~~~fg~g~~--~~~-~~~~~~~g~di~~~l~vtLee~~~G~~k~i~~~r~~~C~~C~G~G~~~~~ 159 (373)
T PRK14301 83 FSSAEDIFSHFSDIFGDLFGFSGG--GSR-RGPRPQAGSDLRYNLTVSFRQAAKGDEVTLRIPKNVTCDDCGGSGAAPGT 159 (373)
T ss_pred cccccccccchHHHHHHHhhccCc--ccc-cCCCCCCCCCEEEEEeccHHHHhCCceEEEEeeecccCCCCCCcccCCCC
Confidence 1 11234677777752211 111 11234578899999999999999999999999999999999999998765
Q ss_pred -cccCCCCCCCcEEEEEEeeccceeeEEEEeCCCCccceEEEccCCCCCccCCCceeEEeEEEEEEeccCccCCcEEEEe
Q 019908 161 -LGKCYGCQGTGMKITTRQIGLGMIQQMQHVCPECRGAGEVISERDKCPQCKANKVTQEKKVLEVHVEKGMQHGQKIAFE 239 (334)
Q Consensus 161 -~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~~~~~~v~Ip~G~~~G~~i~l~ 239 (334)
..+|+.|+|+|.+... . |+++ .+.+|+.|.|+|+++. ++|+.|+|.+++.+.++++|+||||+++|++|+|+
T Consensus 160 ~~~~C~~C~G~G~v~~~--~--G~~~-~~~~C~~C~G~G~~~~--~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~~ 232 (373)
T PRK14301 160 SPETCRHCGGSGQVRQS--Q--GFFQ-IAVPCPVCRGEGRVIT--HPCPKCKGSGIVQQTRELKVRIPAGVDTGSRLRLR 232 (373)
T ss_pred CCcccCCccCeeEEEEE--e--eeEE-EEEeCCCCCceeeecC--CCCCCCCCCceeccceEEEEEeCCCCcCCCEEEEe
Confidence 4679999999987653 2 5554 4899999999999986 89999999999999999999999999999999999
Q ss_pred cCcCCCC-CCCCcCEEEEEEEEeCCCceeecCcEEEEEecCHHHHhCCCeEEEecCCCCeEEEEcCCCceecCCccc---
Q 019908 240 GQADEAP-DTITGDIVFILQLKEHPKFKRKFDDLYVDHTLSLTEALCGFQFALTHLDGRQLLIKSNPGEIIKPGIYF--- 315 (334)
Q Consensus 240 g~G~~~~-~~~~GDL~v~i~v~~~~~f~r~g~dL~~~~~I~l~~al~G~~~~i~tldG~~l~v~i~~g~~i~~g~~~--- 315 (334)
|+|++.+ ++.+|||+|+|+|++|+.|+|+|+||+++++|||.+||+|+++.|+||||+ +.|+||++ +++|...
T Consensus 233 g~G~~~~~~~~~GDLiv~i~v~~h~~f~r~G~DL~~~~~Isl~eAl~G~~~~v~tldG~-i~v~ip~g--~~~g~~~ri~ 309 (373)
T PRK14301 233 GEGEPGVHGGPPGDLYVVITVEDDKIFQRQGQDLVVTQEISFVQAALGDRIEVPTLDDP-VTLDIPKG--TQSGEVFRLR 309 (373)
T ss_pred ccccCCCCCCCCcCEEEEEEEEECCCceeecCcEEEEEEecHHHHhCCCeEEEecCCcc-EEEEECCC--cCCCcEEEEc
Confidence 9999865 567899999999999999999999999999999999999999999999998 89999986 4555433
Q ss_pred ---C----CCCCccEEEEEEEEEe
Q 019908 316 ---D----NFTSVNLYLHEYCFLW 332 (334)
Q Consensus 316 ---~----~~~~GdL~v~~~V~~p 332 (334)
+ ...+|||||+|+|.||
T Consensus 310 g~G~p~~~~~~~GDL~I~~~V~~P 333 (373)
T PRK14301 310 GKGLPYLGSSQKGDLLVEVSVVTP 333 (373)
T ss_pred CCCCCCCCCCCCCCEEEEEEEECC
Confidence 2 2358999999999999
No 20
>PRK14295 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=7.8e-71 Score=531.10 Aligned_cols=308 Identities=32% Similarity=0.612 Sum_probs=259.9
Q ss_pred CccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCh----HHHHHHHHHHhhcCCCcccchhcc----cChhhhhcC
Q 019908 10 NNTKYYEILGVSKSATEDELKKAYRKAAMKNHPDKGGDP----EKFKELGQAYEVLSDPEKRDIYDQ----YGEDALKEG 81 (334)
Q Consensus 10 ~~~~~y~iLgv~~~a~~~eik~ayr~la~~~hPd~~~~~----~~f~~i~~Ay~~L~d~~~r~~YD~----~G~~~~~~~ 81 (334)
..+|||+||||+++|+.+|||+|||+||++||||+|++. ++|++|++||+||+||.+|++||+ ||++++..+
T Consensus 7 ~~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~~~~~G~~g~~~~ 86 (389)
T PRK14295 7 IEKDYYKVLGVPKDATEAEIKKAYRKLAREYHPDANKGDAKAEERFKEISEAYDVLSDEKKRKEYDEARSLFGNGGFRPG 86 (389)
T ss_pred cccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchhHHHHHHHHHHHHHHHCchhhHHHHHHHHhhhcccccccC
Confidence 358999999999999999999999999999999999742 899999999999999999999999 998877532
Q ss_pred CC-C-CCCC-CC--------------------cchhhccccCCCCCCCCCCCCCCcccccccEEEeeeeceeeeecCccc
Q 019908 82 MG-G-AGAA-HN--------------------PFDIFESFFGGGTFGAGGSSRGRRRKQGEDVVHTLKVSLEDLYNGTTK 138 (334)
Q Consensus 82 ~~-~-~~~~-~~--------------------~~d~f~~~Fg~~~~~~~~~~~~~~~~~~~di~~~l~~sl~e~~~G~~~ 138 (334)
.+ + ++++ .+ +.|+|++||++ + ++ .++..++.|+.+.|.+||+|+|+|+++
T Consensus 87 ~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~f~d~f~~~fg~-----~-~~-~~~~~~g~di~~~l~lsLee~~~G~~k 159 (389)
T PRK14295 87 PGGGGGGGFNFDLGDLFGGGAQGGGGAGGGGGLGDVFGGLFNR-----G-GR-RTQPRRGADVESEVTLSFTEAIDGATV 159 (389)
T ss_pred CCCCCCCCCCcccccccccccccccccccccchhhhhcccccC-----C-CC-CCCCCCCCCEEEEEEEEHHHHhCCceE
Confidence 11 1 0110 11 12333333331 1 11 123356889999999999999999999
Q ss_pred ccccceeeeCCCCCCCCCccCC-cccCCCCCCCcEEEEEEeeccceeeEEEEeCCCCccceEEEccCCCCCccCCCceeE
Q 019908 139 KLSLSRNILCPKCKGKGSKSGA-LGKCYGCQGTGMKITTRQIGLGMIQQMQHVCPECRGAGEVISERDKCPQCKANKVTQ 217 (334)
Q Consensus 139 ~i~~~~~~~C~~C~G~G~~~~~-~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~ 217 (334)
++.+++.+.|++|+|+|..... ..+|+.|+|+|.++... |+++ ++.+|+.|.|+|+++. ++|+.|.|.+++.
T Consensus 160 ~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~----g~~~-~~~~C~~C~G~G~~~~--~~C~~C~G~g~~~ 232 (389)
T PRK14295 160 PLRLTSQAPCPACSGTGAKNGTTPRVCPTCSGTGQVSRNS----GGFS-LSEPCPDCKGRGLIAD--DPCLVCKGSGRAK 232 (389)
T ss_pred EEEeeccccCCCCcccccCCCCCCcCCCCCCCEeEEEEEe----cceE-EEEecCCCcceeEEec--cCCCCCCCCceEe
Confidence 9999999999999999998765 46799999999887643 3343 5689999999999986 8999999999999
Q ss_pred EeEEEEEEeccCccCCcEEEEecCcCCCC-CCCCcCEEEEEEEEeCCCceeecCcEEEEEecCHHHHhCCCeEEEecCCC
Q 019908 218 EKKVLEVHVEKGMQHGQKIAFEGQADEAP-DTITGDIVFILQLKEHPKFKRKFDDLYVDHTLSLTEALCGFQFALTHLDG 296 (334)
Q Consensus 218 ~~~~~~v~Ip~G~~~G~~i~l~g~G~~~~-~~~~GDL~v~i~v~~~~~f~r~g~dL~~~~~I~l~~al~G~~~~i~tldG 296 (334)
+.++++|.||+|+++|++|+|+|+|++.+ +..+|||+|+|++++|+.|+|+|+||+++++|||.+||+|+++.|+||||
T Consensus 233 ~~~~l~V~Ip~G~~~G~~i~l~g~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~I~tldG 312 (389)
T PRK14295 233 SSRTMQVRIPAGVSDGQRIRLRGKGAPGERGGPAGDLYVVVHVDPHPVFGRSGDNLTVTVPVTFPEAALGAEVRVPTLGG 312 (389)
T ss_pred eeeEEEEEeCCCCCCCCEEEEcccccCCCCCCCCccEEEEEEEecCCCEEEecCCEEEEEeecHHHHhCCCeEEEECCCC
Confidence 99999999999999999999999999864 56789999999999999999999999999999999999999999999999
Q ss_pred CeEEEEcCCCceecCCccc---------CCCCCccEEEEEEEEEee
Q 019908 297 RQLLIKSNPGEIIKPGIYF---------DNFTSVNLYLHEYCFLWL 333 (334)
Q Consensus 297 ~~l~v~i~~g~~i~~g~~~---------~~~~~GdL~v~~~V~~p~ 333 (334)
+.+.|+||++ +++|... .++.+|||||+|+|.||-
T Consensus 313 ~~~~v~ip~g--~~~g~~iri~G~G~p~~~~~~GDL~i~~~v~~P~ 356 (389)
T PRK14295 313 PPVTVKLPPG--TPNGRVLRVRGKGAVRKDGTRGDLLVTVEVAVPK 356 (389)
T ss_pred CEEEEEECCc--cCCCcEEEECCCCcCCCCCCCCCEEEEEEEECCC
Confidence 8899999986 4555433 234589999999999993
No 21
>PRK14294 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=4.4e-71 Score=529.97 Aligned_cols=311 Identities=32% Similarity=0.577 Sum_probs=264.4
Q ss_pred CccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-h---HHHHHHHHHHhhcCCCcccchhcccChhhhhcC-CCC
Q 019908 10 NNTKYYEILGVSKSATEDELKKAYRKAAMKNHPDKGGD-P---EKFKELGQAYEVLSDPEKRDIYDQYGEDALKEG-MGG 84 (334)
Q Consensus 10 ~~~~~y~iLgv~~~a~~~eik~ayr~la~~~hPd~~~~-~---~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~~~-~~~ 84 (334)
..+|||++|||+++|+.+|||+|||+||++||||+|++ + ++|++|++||++|+||.+|+.||+||+++++.+ +++
T Consensus 2 ~~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~~f~~~~~Ay~vL~d~~~r~~yD~~G~~g~~~~~~~~ 81 (366)
T PRK14294 2 VKRDYYEILGVTRDASEEEIKKSYRKLAMKYHPDRNPGDKEAEELFKEAAEAYEVLSDPKKRGIYDQYGHEGLSGTGFSG 81 (366)
T ss_pred CCCChHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHhccHHHHHHHHhhccccccCCCCCC
Confidence 45899999999999999999999999999999999984 2 799999999999999999999999999877532 111
Q ss_pred CCCC----CCcchhhccccCCCCCCCCCCCCCCcccccccEEEeeeeceeeeecCcccccccceeeeCCCCCCCCCccCC
Q 019908 85 AGAA----HNPFDIFESFFGGGTFGAGGSSRGRRRKQGEDVVHTLKVSLEDLYNGTTKKLSLSRNILCPKCKGKGSKSGA 160 (334)
Q Consensus 85 ~~~~----~~~~d~f~~~Fg~~~~~~~~~~~~~~~~~~~di~~~l~~sl~e~~~G~~~~i~~~~~~~C~~C~G~G~~~~~ 160 (334)
.+++ .++.|+|++|||.++.+ +.+......++.|+.+.|.+||+|+|.|+.+++.+.+.+.|+.|+|+|.....
T Consensus 82 ~~~~~~~~~~~~d~f~~~fg~g~~~--~~~~~~~~~~g~d~~~~l~lslee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~ 159 (366)
T PRK14294 82 FSGFDDIFSSFGDIFEDFFGFGGGR--RGRSRTAVRAGADLRYDLTLPFLEAAFGTEKEIRIQKLETCEECHGSGCEPGT 159 (366)
T ss_pred cCccccchhhhhhhHHHhhccCCCc--CCcccCCCCCCCCceEEEEeeHHHhcCCeEEEEEeeecccCCCCCCccccCCC
Confidence 1111 23457888888611110 11111223568899999999999999999999999999999999999998765
Q ss_pred -cccCCCCCCCcEEEEEEeeccceeeEEEEeCCCCccceEEEccCCCCCccCCCceeEEeEEEEEEeccCccCCcEEEEe
Q 019908 161 -LGKCYGCQGTGMKITTRQIGLGMIQQMQHVCPECRGAGEVISERDKCPQCKANKVTQEKKVLEVHVEKGMQHGQKIAFE 239 (334)
Q Consensus 161 -~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~~~~~~v~Ip~G~~~G~~i~l~ 239 (334)
..+|+.|+|+|.++... |++| ++++|+.|.|+|+++. ++|+.|+|.+++.+.++++|.||||+++|++|+|+
T Consensus 160 ~~~~C~~C~G~G~~~~~~----G~~~-~~~~C~~C~G~G~~~~--~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~~ 232 (366)
T PRK14294 160 SPTTCPQCGGSGQVTQSQ----GFFS-IRTTCPRCRGMGKVIV--SPCKTCHGQGRVRVSKTVQVKIPAGVDTGSRLRLR 232 (366)
T ss_pred CcccCCCcCCeEEEEEEe----eeEE-EEeeCCCCCCcCeecC--cCCCCCCCceEeecceeEEEecCCCCcCCcEEEEc
Confidence 46799999999876432 5664 6899999999999986 89999999999999999999999999999999999
Q ss_pred cCcCCC-CCCCCcCEEEEEEEEeCCCceeecCcEEEEEecCHHHHhCCCeEEEecCCCCeEEEEcCCCceecCCccc---
Q 019908 240 GQADEA-PDTITGDIVFILQLKEHPKFKRKFDDLYVDHTLSLTEALCGFQFALTHLDGRQLLIKSNPGEIIKPGIYF--- 315 (334)
Q Consensus 240 g~G~~~-~~~~~GDL~v~i~v~~~~~f~r~g~dL~~~~~I~l~~al~G~~~~i~tldG~~l~v~i~~g~~i~~g~~~--- 315 (334)
|+|++. .++.+|||+|+|++++|+.|+|+|+||++++.|||.+||+|+++.|+||||+ +.|.||++ +++|...
T Consensus 233 g~G~~~~~~~~~GDl~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldG~-~~v~ip~g--~~~g~~iri~ 309 (366)
T PRK14294 233 GEGEAGVRGGPPGDLYVFLTVEPHEFFERDGNDVHCKVPISFVQAALGAQIEVPTLEGE-RELKIPKG--TQPGDIFRFK 309 (366)
T ss_pred cCccCCCCCCCCCcEEEEEEEccCCcceecCCCEEEEEEeCHHHHhCCCeEEEECCCCc-EEEEECCC--cCCCCEEEEC
Confidence 999986 4567899999999999999999999999999999999999999999999997 68999886 4555433
Q ss_pred ---CC----CCCccEEEEEEEEEe
Q 019908 316 ---DN----FTSVNLYLHEYCFLW 332 (334)
Q Consensus 316 ---~~----~~~GdL~v~~~V~~p 332 (334)
++ ..+|||||+|+|.+|
T Consensus 310 G~G~p~~~~~~~GDL~V~~~v~~P 333 (366)
T PRK14294 310 GKGIPSLRGGGRGDQIIEVEVKVP 333 (366)
T ss_pred CCCCCCCCCCCCCCEEEEEEEECC
Confidence 22 357999999999999
No 22
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=100.00 E-value=6.5e-71 Score=527.68 Aligned_cols=312 Identities=38% Similarity=0.697 Sum_probs=270.9
Q ss_pred ccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCh---HHHHHHHHHHhhcCCCcccchhcccChhhhhcCCCC-CC--
Q 019908 13 KYYEILGVSKSATEDELKKAYRKAAMKNHPDKGGDP---EKFKELGQAYEVLSDPEKRDIYDQYGEDALKEGMGG-AG-- 86 (334)
Q Consensus 13 ~~y~iLgv~~~a~~~eik~ayr~la~~~hPd~~~~~---~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~~~~~~-~~-- 86 (334)
|||++|||+++|+.+|||+|||+||++||||+|+++ ++|++|++||++|+|+.+|++||+||+++++.+.++ ++
T Consensus 1 d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~~~~~~~~~~~~~~ 80 (354)
T TIGR02349 1 DYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNKDKEAEEKFKEINEAYEVLSDPEKRAQYDQFGHAGFNGGGGGGGGGF 80 (354)
T ss_pred ChHHhCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHhhChHHHHhhhhcccccccccCcCCCCCc
Confidence 799999999999999999999999999999999743 799999999999999999999999999877532111 11
Q ss_pred ------CCCCcchhhccccCCCCCCCCCCCCCCcccccccEEEeeeeceeeeecCcccccccceeeeCCCCCCCCCccCC
Q 019908 87 ------AAHNPFDIFESFFGGGTFGAGGSSRGRRRKQGEDVVHTLKVSLEDLYNGTTKKLSLSRNILCPKCKGKGSKSGA 160 (334)
Q Consensus 87 ------~~~~~~d~f~~~Fg~~~~~~~~~~~~~~~~~~~di~~~l~~sl~e~~~G~~~~i~~~~~~~C~~C~G~G~~~~~ 160 (334)
++.++.++|++|||++. ++ +.++.....++.|+.+.|.+||+|+|+|+++++.+++.+.|+.|+|+|.....
T Consensus 81 ~~~~~~~~~~~~~~f~~~fg~~~-g~-~~~~~~~~~~~~d~~~~l~vsLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~ 158 (354)
T TIGR02349 81 NGFDIGFFGDFGDIFGDFFGGGG-GS-GRRRRSGPRRGEDLRYDLELTFEEAVFGVEKEIEIPRKESCETCHGTGAKPGT 158 (354)
T ss_pred CCccccCcCchhhhHHHHhccCc-cc-CccccCCCCCCCCeEEEEEEEHHHHhCCeeEEEEeecCCcCCCCCCCCCCCCC
Confidence 12245588999997421 11 11112234578899999999999999999999999999999999999998765
Q ss_pred -cccCCCCCCCcEEEEEEeeccceeeEEEEeCCCCccceEEEccCCCCCccCCCceeEEeEEEEEEeccCccCCcEEEEe
Q 019908 161 -LGKCYGCQGTGMKITTRQIGLGMIQQMQHVCPECRGAGEVISERDKCPQCKANKVTQEKKVLEVHVEKGMQHGQKIAFE 239 (334)
Q Consensus 161 -~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~~~~~~v~Ip~G~~~G~~i~l~ 239 (334)
..+|+.|+|+|.++..+++++|++++ +++|+.|.|+|+++. .+|+.|+|.+++.+.+.++|+||||+++|++|+|+
T Consensus 159 ~~~~C~~C~G~G~~~~~~~~~~g~~~~-~~~C~~C~G~G~~~~--~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~~ 235 (354)
T TIGR02349 159 DPKTCPTCGGTGQVRRQQGTPFGFFQQ-QQTCPTCGGEGKIIK--EPCSTCKGKGRVKERKTITVKIPAGVDTGQRLRVS 235 (354)
T ss_pred CCccCCCCCCeeEEEEEEeccCCceEE-EEecCCCCCcceecC--CCCCCCCCCcEecccceEEEEECCCCCCCCEEEEe
Confidence 56799999999999999999999987 679999999999986 89999999999999999999999999999999999
Q ss_pred cCcCCC-CCCCCcCEEEEEEEEeCCCceeecCcEEEEEecCHHHHhCCCeEEEecCCCCeEEEEcCCCceecCCccc---
Q 019908 240 GQADEA-PDTITGDIVFILQLKEHPKFKRKFDDLYVDHTLSLTEALCGFQFALTHLDGRQLLIKSNPGEIIKPGIYF--- 315 (334)
Q Consensus 240 g~G~~~-~~~~~GDL~v~i~v~~~~~f~r~g~dL~~~~~I~l~~al~G~~~~i~tldG~~l~v~i~~g~~i~~g~~~--- 315 (334)
|+|++. .+..+|||+|+|++++|+.|+|+|+||++++.|||.|||+|+++.|+|||| .+.|.||++ ++++...
T Consensus 236 g~G~~~~~~~~~GDl~v~i~v~~h~~f~r~g~DL~~~~~isl~eAl~G~~~~i~~ldG-~i~v~ip~g--~~~g~~~~i~ 312 (354)
T TIGR02349 236 GKGNAGENGGPNGDLYVVIRVKPHKIFERDGNDLYIEVPISFTQAILGGEIEVPTLDG-DVKLKIPAG--TQSGTVFRLK 312 (354)
T ss_pred cCccCCCCCCCCCCEEEEEEEecCcceEEecCCEEEEEEeCHHHHhCCCeEEEecCCc-eEEEEECCc--ccCCcEEEEC
Confidence 999985 456789999999999999999999999999999999999999999999999 588999876 4555433
Q ss_pred ---CC----CCCccEEEEEEEEEe
Q 019908 316 ---DN----FTSVNLYLHEYCFLW 332 (334)
Q Consensus 316 ---~~----~~~GdL~v~~~V~~p 332 (334)
++ ..+|||||+|+|.||
T Consensus 313 g~G~p~~~~~~~GDL~i~~~v~~P 336 (354)
T TIGR02349 313 GKGVPRLRGNGRGDLLVTVKVETP 336 (354)
T ss_pred CCCcCCCCCCCCCCEEEEEEEECC
Confidence 22 358999999999999
No 23
>PRK10767 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.7e-70 Score=527.31 Aligned_cols=308 Identities=38% Similarity=0.716 Sum_probs=261.7
Q ss_pred CccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-h---HHHHHHHHHHhhcCCCcccchhcccChhhhhcCCCCC
Q 019908 10 NNTKYYEILGVSKSATEDELKKAYRKAAMKNHPDKGGD-P---EKFKELGQAYEVLSDPEKRDIYDQYGEDALKEGMGGA 85 (334)
Q Consensus 10 ~~~~~y~iLgv~~~a~~~eik~ayr~la~~~hPd~~~~-~---~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~~~~~~~ 85 (334)
..+|||+||||+++|+.+|||+|||+||++||||+|++ + ++|++|++||++|+|+.+|+.||+||++++..+.+++
T Consensus 2 ~~~d~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~~~~~~~~~~ 81 (371)
T PRK10767 2 AKRDYYEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPGDKEAEEKFKEIKEAYEVLSDPQKRAAYDQYGHAAFEQGGGGG 81 (371)
T ss_pred CCCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCcHHHHHHHHHHHHHHHHhcchhhhhHhhhccccccccCCCCC
Confidence 35799999999999999999999999999999999974 2 7999999999999999999999999988775321111
Q ss_pred --CC---CCC-cchhhccccCCCCCCCCCCCCCCcccccccEEEeeeeceeeeecCcccccccceeeeCCCCCCCCCccC
Q 019908 86 --GA---AHN-PFDIFESFFGGGTFGAGGSSRGRRRKQGEDVVHTLKVSLEDLYNGTTKKLSLSRNILCPKCKGKGSKSG 159 (334)
Q Consensus 86 --~~---~~~-~~d~f~~~Fg~~~~~~~~~~~~~~~~~~~di~~~l~~sl~e~~~G~~~~i~~~~~~~C~~C~G~G~~~~ 159 (334)
++ +.+ |.++|+.|||+++ + +..+.+.++.|+.+.|++||+|+|+|+++++.+.+.+.|+.|+|+|....
T Consensus 82 ~~~~~~~~~~~f~~~f~~~fgg~~----~-~~~~~~~~g~di~~~l~vsLee~~~G~~~~v~~~r~~~C~~C~G~G~~~~ 156 (371)
T PRK10767 82 GFGGGGGFGDIFGDIFGDIFGGGR----G-GGRQRARRGADLRYNMEITLEEAVRGVTKEIRIPTLVTCDTCHGSGAKPG 156 (371)
T ss_pred CCCCccccccchhhhhhhhccCCc----c-ccCCCCCCCCCeEEEEEeehHHhhCCeeEEEeeeecccCCCCCCcccCCC
Confidence 11 112 3356666665311 1 11122457889999999999999999999999999999999999999876
Q ss_pred C-cccCCCCCCCcEEEEEEeeccceeeEEEEeCCCCccceEEEccCCCCCccCCCceeEEeEEEEEEeccCccCCcEEEE
Q 019908 160 A-LGKCYGCQGTGMKITTRQIGLGMIQQMQHVCPECRGAGEVISERDKCPQCKANKVTQEKKVLEVHVEKGMQHGQKIAF 238 (334)
Q Consensus 160 ~-~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~~~~~~v~Ip~G~~~G~~i~l 238 (334)
. ..+|+.|+|+|.++... |+++ ++.+|+.|.|+|+++. ++|+.|+|.+++.+.+.++|.||||+++|++|+|
T Consensus 157 ~~~~~C~~C~G~G~~~~~~----g~~~-~~~~C~~C~G~G~~~~--~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~ 229 (371)
T PRK10767 157 TSPKTCPTCHGAGQVRMQQ----GFFT-VQQTCPTCHGRGKIIK--DPCKKCHGQGRVEKEKTLSVKIPAGVDTGDRIRL 229 (371)
T ss_pred CCCccCCCCCCeeEEEEee----ceEE-EEEeCCCCCCceeECC--CCCCCCCCCceEeeeeeEEEecCCCCCCCcEEEE
Confidence 5 45799999999876543 5664 6789999999999986 8999999999999999999999999999999999
Q ss_pred ecCcCCC-CCCCCcCEEEEEEEEeCCCceeecCcEEEEEecCHHHHhCCCeEEEecCCCCeEEEEcCCCceecCCccc--
Q 019908 239 EGQADEA-PDTITGDIVFILQLKEHPKFKRKFDDLYVDHTLSLTEALCGFQFALTHLDGRQLLIKSNPGEIIKPGIYF-- 315 (334)
Q Consensus 239 ~g~G~~~-~~~~~GDL~v~i~v~~~~~f~r~g~dL~~~~~I~l~~al~G~~~~i~tldG~~l~v~i~~g~~i~~g~~~-- 315 (334)
+|+|++. +++.+|||+|+|++++|+.|+|+|+||++++.|||.+||+|+++.|+||||. +.|+||++ ++++...
T Consensus 230 ~g~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~~ldG~-i~v~ip~g--~~~g~~~~i 306 (371)
T PRK10767 230 SGEGEAGERGGPAGDLYVQIHVKEHPIFERDGNDLYCEVPISFTTAALGGEIEVPTLDGR-VKLKIPEG--TQTGKLFRL 306 (371)
T ss_pred ecCccCCCCCCCCcCEEEEEEEeeCCCEEEecCCEEEEEEeCHHHHhCCCeEEEecCCCc-EEEEeCCC--CCCCCEEEE
Confidence 9999985 4567899999999999999999999999999999999999999999999994 89999976 4555433
Q ss_pred ----C----CCCCccEEEEEEEEEe
Q 019908 316 ----D----NFTSVNLYLHEYCFLW 332 (334)
Q Consensus 316 ----~----~~~~GdL~v~~~V~~p 332 (334)
+ +..+|||||+|+|.||
T Consensus 307 ~g~G~p~~~~~~~GDL~v~~~v~~P 331 (371)
T PRK10767 307 RGKGVKSVRSGARGDLYCQVVVETP 331 (371)
T ss_pred CCCCcCCCCCCCCCCEEEEEEEECC
Confidence 2 2357999999999999
No 24
>PRK14291 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=2.6e-70 Score=527.07 Aligned_cols=313 Identities=36% Similarity=0.649 Sum_probs=262.8
Q ss_pred ccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCh---HHHHHHHHHHhhcCCCcccchhcccChhhhhcCCC---C
Q 019908 11 NTKYYEILGVSKSATEDELKKAYRKAAMKNHPDKGGDP---EKFKELGQAYEVLSDPEKRDIYDQYGEDALKEGMG---G 84 (334)
Q Consensus 11 ~~~~y~iLgv~~~a~~~eik~ayr~la~~~hPd~~~~~---~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~~~~~---~ 84 (334)
.+|||++|||+++|+.+|||+|||+||++||||+|+++ ++|++|++||++|+||.+|++||+||++++..+.+ +
T Consensus 2 ~~d~Y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vLsd~~kR~~YD~~g~~~~~~~~~~~~~ 81 (382)
T PRK14291 2 KKDYYEILGVSRNATQEEIKKAYRRLARKYHPDFNKNPEAEEKFKEINEAYQVLSDPEKRKLYDQFGHAAFSGSGQQQQG 81 (382)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHhcCHHHHHHHhhhcccccccccCcccc
Confidence 47999999999999999999999999999999999753 89999999999999999999999999887653211 1
Q ss_pred CC-----CCCCcchhhccccCC---C-CCCCC-C--CC--CCCcccccccEEEeeeeceeeeecCcccccccceeeeCCC
Q 019908 85 AG-----AAHNPFDIFESFFGG---G-TFGAG-G--SS--RGRRRKQGEDVVHTLKVSLEDLYNGTTKKLSLSRNILCPK 150 (334)
Q Consensus 85 ~~-----~~~~~~d~f~~~Fg~---~-~~~~~-~--~~--~~~~~~~~~di~~~l~~sl~e~~~G~~~~i~~~~~~~C~~ 150 (334)
.+ .+.++.|+|.+||+. + .|++. . .+ ....+.++.|+.+.|.+||+|+|+|+.+++.+++.+.|+.
T Consensus 82 ~~~~~~~~~~~~~d~f~~~f~~fg~~~~fg~~~~~~~~~~~~~~~~~g~di~~~l~vsLee~~~G~~~~i~~~r~~~C~~ 161 (382)
T PRK14291 82 QEGFSDFGGGNIEDILEDVFDIFGFGDIFGRRRATRERRKTYQRPVKGEDIYQTVEISLEEAYTGTTVSLEVPRYVPCEA 161 (382)
T ss_pred ccccccccCCCHHHHHHHHHHhccccccccccccccccccccccccCCCCEEEEEEEEHHHhhCCEEEEEEEeeeccCCC
Confidence 01 123455777777421 1 12110 0 11 0122346889999999999999999999999999999999
Q ss_pred CCCCCCccCC-cccCCCCCCCcEEEEEEeeccceeeEEEEeCCCCccceEEEccCCCCCccCCCceeEEeEEEEEEeccC
Q 019908 151 CKGKGSKSGA-LGKCYGCQGTGMKITTRQIGLGMIQQMQHVCPECRGAGEVISERDKCPQCKANKVTQEKKVLEVHVEKG 229 (334)
Q Consensus 151 C~G~G~~~~~-~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~~~~~~v~Ip~G 229 (334)
|+|+|..... ..+|+.|+|+|.++.. +++++++.+|+.|.|+|. +. ++|+.|+|.+++.+.++++|+||||
T Consensus 162 C~G~G~~~~~~~~~C~~C~G~G~~~~~-----~g~~~~~~~C~~C~G~G~-~~--~~C~~C~G~g~v~~~~~l~V~Ip~G 233 (382)
T PRK14291 162 CGGTGYDPGSGEKVCPTCGGSGEIYQR-----GGFFRISQTCPTCGGEGV-LR--EPCSKCNGRGLVIKKETIKVRIPPG 233 (382)
T ss_pred CccccCCCCCCCccCCCCCCceEEEEe-----cceEEEEecCCCCCCceE-Ec--cCCCCCCCCceEEeeeEEEEEeCCC
Confidence 9999998765 4679999999987664 133456899999999995 43 8999999999999999999999999
Q ss_pred ccCCcEEEEecCcCCCC-CCCCcCEEEEEEEEeCCCceeecCcEEEEEecCHHHHhCCCeEEEecCCCCeEEEEcCCCce
Q 019908 230 MQHGQKIAFEGQADEAP-DTITGDIVFILQLKEHPKFKRKFDDLYVDHTLSLTEALCGFQFALTHLDGRQLLIKSNPGEI 308 (334)
Q Consensus 230 ~~~G~~i~l~g~G~~~~-~~~~GDL~v~i~v~~~~~f~r~g~dL~~~~~I~l~~al~G~~~~i~tldG~~l~v~i~~g~~ 308 (334)
+.+|++|+|+|+|++.+ ++.+|||||+|++++|+.|+|+|+||++++.|+|.||++|+++.|+|+||+.+.|+||++
T Consensus 234 ~~~G~~i~~~g~G~~~~~g~~~GDL~v~i~~~~h~~F~r~G~DL~~~~~Isl~eAl~G~~~~i~~ldG~~l~V~Ip~g-- 311 (382)
T PRK14291 234 VDNGSKLRVPGKGHAGRFGGPPGDLYIIVKVKPHPLFERRGDNLYLDVNITVAEAVLGTELEVPLLDGKKEKVKIPPG-- 311 (382)
T ss_pred CCCCCEEEEecCcCCCCCCCCCccEEEEEEEccCCCeeeecCCeEEEEEeeHHHHhCCCEEEEecCCCCEEEEEECCc--
Confidence 99999999999999864 678999999999999999999999999999999999999999999999999899999987
Q ss_pred ecCCccc------C----CCCCccEEEEEEEEEee
Q 019908 309 IKPGIYF------D----NFTSVNLYLHEYCFLWL 333 (334)
Q Consensus 309 i~~g~~~------~----~~~~GdL~v~~~V~~p~ 333 (334)
+++|... + ...+|||||+|+|.||-
T Consensus 312 ~~~G~~i~i~G~G~p~~~~~~~GDL~V~~~V~~P~ 346 (382)
T PRK14291 312 TKEGDKIRVPGKGMPRLKGSGYGDLVVRVHIDVPK 346 (382)
T ss_pred cCCCCEEEECCCCCCCCCCCCCCCEEEEEEEEeCC
Confidence 4555433 2 23579999999999993
No 25
>PRK14290 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=3.8e-70 Score=523.30 Aligned_cols=313 Identities=34% Similarity=0.609 Sum_probs=265.6
Q ss_pred cccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCh-----HHHHHHHHHHhhcCCCcccchhcccChhhhhcCCCCC-
Q 019908 12 TKYYEILGVSKSATEDELKKAYRKAAMKNHPDKGGDP-----EKFKELGQAYEVLSDPEKRDIYDQYGEDALKEGMGGA- 85 (334)
Q Consensus 12 ~~~y~iLgv~~~a~~~eik~ayr~la~~~hPd~~~~~-----~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~~~~~~~- 85 (334)
.|||++|||+++|+.+|||+|||+||++||||+|++. ++|++|++||++|+|+.+|+.||+||+.+++.+.++.
T Consensus 3 ~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~G~~~~~~~~~~~~ 82 (365)
T PRK14290 3 KDYYKILGVDRNASQEDIKKAFRELAKKWHPDLHPGNKAEAEEKFKEISEAYEVLSDPQKRRQYDQTGTVDFGAGGSNFN 82 (365)
T ss_pred CChhhhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchhHHHHHHHHHHHHHHHhcChhhhhhhcccCCcccccCCCCcc
Confidence 6999999999999999999999999999999999742 8999999999999999999999999988765311110
Q ss_pred -C---CCCCcchhhccccCCCCCC----CCCCCCCCcccccccEEEeeeeceeeeecCcccccccceeeeCCCCCCCCCc
Q 019908 86 -G---AAHNPFDIFESFFGGGTFG----AGGSSRGRRRKQGEDVVHTLKVSLEDLYNGTTKKLSLSRNILCPKCKGKGSK 157 (334)
Q Consensus 86 -~---~~~~~~d~f~~~Fg~~~~~----~~~~~~~~~~~~~~di~~~l~~sl~e~~~G~~~~i~~~~~~~C~~C~G~G~~ 157 (334)
+ ++.++.|+|+.|||+. ++ ++.++..+...++.|+.+.|.+||+|+|.|+++++.+.+.+.|+.|+|+|..
T Consensus 83 ~~~~~~~~~~~d~f~~~fg~~-~~~~~~~~~~~~~~~~~~~~di~~~l~lsLee~~~G~~~~i~~~r~~~C~~C~G~g~~ 161 (365)
T PRK14290 83 WDNFTHFSDINDIFNQIFGGN-FGSDFFSGFGNQQSTRNIDLDIYTNLDISLEDAYYGTEKRIKYRRNAMCPDCSGTGAK 161 (365)
T ss_pred ccccccccchhHHHHHHhcCc-cccccccccccccCCCCCCCCEEEEEEecHHHhcCCEEEEEEeeecccCCCCccccCC
Confidence 0 1235678899999742 11 0101111112347899999999999999999999999999999999999998
Q ss_pred cCCcccCCCCCCCcEEEEEEeecccee-eEEEEeCCCCccceEEEccCCCCCccCCCceeEEeEEEEEEeccCccCCcEE
Q 019908 158 SGALGKCYGCQGTGMKITTRQIGLGMI-QQMQHVCPECRGAGEVISERDKCPQCKANKVTQEKKVLEVHVEKGMQHGQKI 236 (334)
Q Consensus 158 ~~~~~~C~~C~G~G~~~~~~~~~~g~~-~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~~~~~~v~Ip~G~~~G~~i 236 (334)
.....+|+.|+|+|.+...++ +|++ ++.+.+|+.|.|+|+++. ++|+.|+|.+++.+.++++|.||||+.+|++|
T Consensus 162 ~~~~~~C~~C~G~G~~~~~~~--~g~~~~~~~~~C~~C~G~G~~~~--~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i 237 (365)
T PRK14290 162 NGKLITCPTCHGTGQQRIVRG--QGFFRMVTVTTCRTCGGRGRIPE--EKCPRCNGTGTVVVNEDISVKIPKGATDNLRL 237 (365)
T ss_pred CCCCccCCCCCCcCEEEEEec--cCeEEEEEEEeCCCCCCceeEcc--CCCCCCCCceeEEEeeEEEEEECCCCCCCcEE
Confidence 776678999999998877664 4444 456789999999999976 89999999999999999999999999999999
Q ss_pred EEecCcCCCCCCCCcCEEEEEEEEeCCCceeecCcEEEEEecCHHHHhCCCeEEEecCCCCeEEEEcCCCceecCCccc-
Q 019908 237 AFEGQADEAPDTITGDIVFILQLKEHPKFKRKFDDLYVDHTLSLTEALCGFQFALTHLDGRQLLIKSNPGEIIKPGIYF- 315 (334)
Q Consensus 237 ~l~g~G~~~~~~~~GDL~v~i~v~~~~~f~r~g~dL~~~~~I~l~~al~G~~~~i~tldG~~l~v~i~~g~~i~~g~~~- 315 (334)
+|+|+|+. +++.+|||||+|++++|+.|+|+|+||++++.|||.+|++|+++.|+|++|. +.|+||++ ++++...
T Consensus 238 ~~~g~G~~-~~~~~GDL~v~v~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~I~~~~g~-i~V~Ip~g--~~~g~~ir 313 (365)
T PRK14290 238 RVKGKGQS-YGGRTGDLYVVLRVNNDPNIQRINDDLYVDQKINFPQAALGGEIEIKLFREK-YNLKIPEG--TQPGEVLK 313 (365)
T ss_pred EEccccCC-CCCCCCCEEEEEEEcCCCCEEEecCCEEEEEEeCHHHHhCCCEEEEEcCCce-EEEEECCc--cCCCcEEE
Confidence 99999986 6788999999999999999999999999999999999999999999999996 89999976 4555432
Q ss_pred -----C----CCCCccEEEEEEEEEee
Q 019908 316 -----D----NFTSVNLYLHEYCFLWL 333 (334)
Q Consensus 316 -----~----~~~~GdL~v~~~V~~p~ 333 (334)
+ ...+|||||+|+|.+|.
T Consensus 314 i~g~G~p~~~~~~~GDL~V~~~V~~P~ 340 (365)
T PRK14290 314 IKGAGMPHLNGHGSGDLLVRINVEVPK 340 (365)
T ss_pred ECCCCCCCCCCCCCCCEEEEEEEECCC
Confidence 1 22579999999999994
No 26
>PRK14300 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=5.3e-70 Score=523.20 Aligned_cols=312 Identities=29% Similarity=0.565 Sum_probs=263.0
Q ss_pred cccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCh---HHHHHHHHHHhhcCCCcccchhcccChhhhhcCC--CCC-
Q 019908 12 TKYYEILGVSKSATEDELKKAYRKAAMKNHPDKGGDP---EKFKELGQAYEVLSDPEKRDIYDQYGEDALKEGM--GGA- 85 (334)
Q Consensus 12 ~~~y~iLgv~~~a~~~eik~ayr~la~~~hPd~~~~~---~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~~~~--~~~- 85 (334)
+|||+||||+++||.+|||+|||+||++||||+++++ ++|++|++||++|+|+.+|+.||+||++++..+. +++
T Consensus 3 ~~~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~~~~~~~~~~~~g 82 (372)
T PRK14300 3 QDYYQILGVSKTASQADLKKAYLKLAKQYHPDTTDAKDAEKKFKEINAAYDVLKDEQKRAAYDRFGHDAFQNQQSRGGGG 82 (372)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcCHHHHHHHHHHHHHHhhhHhHhhHHHhccccccccccccCCCC
Confidence 6999999999999999999999999999999999753 7999999999999999999999999988775321 111
Q ss_pred --CCC-CCcchhhccccCCCCCCCCCC-CCCCcccccccEEEeeeeceeeeecCcccccccceeeeCCCCCCCCCccCC-
Q 019908 86 --GAA-HNPFDIFESFFGGGTFGAGGS-SRGRRRKQGEDVVHTLKVSLEDLYNGTTKKLSLSRNILCPKCKGKGSKSGA- 160 (334)
Q Consensus 86 --~~~-~~~~d~f~~~Fg~~~~~~~~~-~~~~~~~~~~di~~~l~~sl~e~~~G~~~~i~~~~~~~C~~C~G~G~~~~~- 160 (334)
+++ .++.++|++||++. |++++. .....+.++.|+.+.|.+||+|+|.|+.+++.+.+.+.|+.|+|+|.....
T Consensus 83 ~~~~~~~~~~~~f~~~f~~~-~gg~~~~~~~~~~~~g~di~~~l~~sLee~~~G~~k~i~~~r~~~C~~C~G~g~~~~~~ 161 (372)
T PRK14300 83 NHGGFHPDINDIFGDFFSDF-MGGSRRSRPTSSKVRGSDLKYNLTINLEEAFHGIEKNISFSSEVKCDTCHGSGSEKGET 161 (372)
T ss_pred CCCccccchhhhHHHHHHhh-cCCCCCCCCCcCCCCCCCeeEEEEEEHHHHhCCceEEEEeeeccccCCCCCcccCCCCC
Confidence 111 13345566666421 111111 111122468899999999999999999999999999999999999998765
Q ss_pred cccCCCCCCCcEEEEEEeeccceeeEEEEeCCCCccceEEEccCCCCCccCCCceeEEeEEEEEEeccCccCCcEEEEec
Q 019908 161 LGKCYGCQGTGMKITTRQIGLGMIQQMQHVCPECRGAGEVISERDKCPQCKANKVTQEKKVLEVHVEKGMQHGQKIAFEG 240 (334)
Q Consensus 161 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~~~~~~v~Ip~G~~~G~~i~l~g 240 (334)
..+|+.|+|+|.++.. .|+++ ++.+|+.|.|+|+++. ++|+.|+|.+++.+.+.++|.||||+++|++|+|+|
T Consensus 162 ~~~C~~C~G~G~~~~~----~g~~~-~~~~C~~C~G~G~~~~--~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~l~g 234 (372)
T PRK14300 162 VTTCDACSGVGATRMQ----QGFFT-IEQACHKCQGNGQIIK--NPCKKCHGMGRYHKQRNLSVNIPAGVENGTRIRHTG 234 (372)
T ss_pred CccCCCccCeEEEEEe----eceEE-EEEeCCCCCccceEeC--CCCCCCCCceEEEeeEEEEEEECCCCCCCcEEEEec
Confidence 4679999999987652 36666 6789999999999986 899999999999999999999999999999999999
Q ss_pred CcCCC-CCCCCcCEEEEEEEEeCCCceeecCcEEEEEecCHHHHhCCCeEEEecCCCCeEEEEcCCCceecCCccc----
Q 019908 241 QADEA-PDTITGDIVFILQLKEHPKFKRKFDDLYVDHTLSLTEALCGFQFALTHLDGRQLLIKSNPGEIIKPGIYF---- 315 (334)
Q Consensus 241 ~G~~~-~~~~~GDL~v~i~v~~~~~f~r~g~dL~~~~~I~l~~al~G~~~~i~tldG~~l~v~i~~g~~i~~g~~~---- 315 (334)
+|++. +++.+|||+|+|++++|+.|+|+|+||++++.|+|.+||+|+++.|+||||+.+.|+||++ ++++...
T Consensus 235 ~G~~~~~~~~~GDL~v~i~v~~h~~f~R~G~Dl~~~~~Isl~~Al~G~~~~i~~ldg~~i~v~Ip~g--~~~g~~iri~g 312 (372)
T PRK14300 235 EGEAGIRGGNSGDLYVDIAIKPHDIYKVDGANLHCKLPISFVNAALGGEIEVPVIEGGKVNLTIPAG--TQNGDQLRLRS 312 (372)
T ss_pred cccCCCCCCCCCCEEEEEEECCCCCeEEecCCEEEEEecCHHHHhCCCEEEEecCCCCEEEEEECCc--cCCCcEEEECC
Confidence 99986 4677899999999999999999999999999999999999999999999998899999987 4555433
Q ss_pred --CC----CCCccEEEEEEEEEee
Q 019908 316 --DN----FTSVNLYLHEYCFLWL 333 (334)
Q Consensus 316 --~~----~~~GdL~v~~~V~~p~ 333 (334)
++ ..+|||||+|+|.||.
T Consensus 313 ~G~p~~~~~~~GDL~V~~~v~~P~ 336 (372)
T PRK14300 313 KGMSKMRSTIRGDMLTHIHVEVPK 336 (372)
T ss_pred CCCCCCCCCCCCCEEEEEEEECCC
Confidence 22 3579999999999994
No 27
>PRK14283 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=2e-69 Score=520.57 Aligned_cols=310 Identities=32% Similarity=0.614 Sum_probs=264.2
Q ss_pred CCccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCh---HHHHHHHHHHhhcCCCcccchhcccChhhhhcCCC--
Q 019908 9 SNNTKYYEILGVSKSATEDELKKAYRKAAMKNHPDKGGDP---EKFKELGQAYEVLSDPEKRDIYDQYGEDALKEGMG-- 83 (334)
Q Consensus 9 ~~~~~~y~iLgv~~~a~~~eik~ayr~la~~~hPd~~~~~---~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~~~~~-- 83 (334)
++++|||++|||+++|+.+|||+|||+||++||||+|+++ ++|++|++||++|+|+.+|++||+||++++.....
T Consensus 2 ~~~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~a~~~f~~i~~Ay~~Lsd~~kR~~YD~~G~~g~~~~~~~~ 81 (378)
T PRK14283 2 AEKRDYYEVLGVDRNADKKEIKKAYRKLARKYHPDVSEEEGAEEKFKEISEAYAVLSDDEKRQRYDQFGHAGMDGFSQED 81 (378)
T ss_pred CCcCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhchhHHHHHHhhhcccccccccccc
Confidence 4578999999999999999999999999999999999753 89999999999999999999999999887642100
Q ss_pred --CCCCCC--------Ccchhhccc-cCCCCCCCCCCCCCCcccccccEEEeeeeceeeeecCcccccccceeeeCCCCC
Q 019908 84 --GAGAAH--------NPFDIFESF-FGGGTFGAGGSSRGRRRKQGEDVVHTLKVSLEDLYNGTTKKLSLSRNILCPKCK 152 (334)
Q Consensus 84 --~~~~~~--------~~~d~f~~~-Fg~~~~~~~~~~~~~~~~~~~di~~~l~~sl~e~~~G~~~~i~~~~~~~C~~C~ 152 (334)
+..... ++.++|+.| |++ ++ .+++.++.|+.++|.+||+|+|.|+.+++.+++.+.|+.|+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~f~~~~fgg------~~--~~~~~kg~di~~~l~vsLed~~~G~~~~i~~~r~~~C~~C~ 153 (378)
T PRK14283 82 IFNNINFEDIFQGFGFGIGNIFDMFGFGG------GS--RHGPQRGADIYTEVEITLEEAASGVEKDIKVRHTKKCPVCN 153 (378)
T ss_pred cccccCccccccccccchhhhccccccCC------CC--CCCccCCCCeEEEeeeeHHHHhCCcceEEEeeeeccCCCCC
Confidence 000000 112333333 321 11 12234688999999999999999999999999999999999
Q ss_pred CCCCccCC-cccCCCCCCCcEEEEEEeeccceeeEEEEeCCCCccceEEEccCCCCCccCCCceeEEeEEEEEEeccCcc
Q 019908 153 GKGSKSGA-LGKCYGCQGTGMKITTRQIGLGMIQQMQHVCPECRGAGEVISERDKCPQCKANKVTQEKKVLEVHVEKGMQ 231 (334)
Q Consensus 153 G~G~~~~~-~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~~~~~~v~Ip~G~~ 231 (334)
|+|..... ..+|+.|+|+|.+...+++++|++++ +.+|+.|.|+|+.+. ++|..|+|++++.+.+.++|.||||++
T Consensus 154 G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~-~~~C~~C~G~G~~~~--~~C~~C~G~g~v~~~~~l~V~IppG~~ 230 (378)
T PRK14283 154 GSRAEPGSEVKTCPTCGGTGQVKQVRNTILGQMMN-VTTCPDCQGEGKIVE--KPCSNCHGKGVVRETKTISVKIPAGVE 230 (378)
T ss_pred ccccCCCCCCccCCCcCCccEEEEEEeccCceEEE-EEECCCCCccceecC--CCCCCCCCceeeccceeEEEEECCCCC
Confidence 99987655 46799999999999999999998875 579999999999976 899999999999999999999999999
Q ss_pred CCcEEEEecCcCCCC-CCCCcCEEEEEEEEeCCCceeecCcEEEEEecCHHHHhCCCeEEEecCCCCeEEEEcCCCceec
Q 019908 232 HGQKIAFEGQADEAP-DTITGDIVFILQLKEHPKFKRKFDDLYVDHTLSLTEALCGFQFALTHLDGRQLLIKSNPGEIIK 310 (334)
Q Consensus 232 ~G~~i~l~g~G~~~~-~~~~GDL~v~i~v~~~~~f~r~g~dL~~~~~I~l~~al~G~~~~i~tldG~~l~v~i~~g~~i~ 310 (334)
+|++|+|+|+|++.+ ++.+|||+|+|+|++|+.|+|+|+||++++.|||.+|++|+++.|+|||| .+.|+||++ ++
T Consensus 231 ~G~~i~l~g~G~~~~~~~~~GDLiv~i~v~~~~~f~r~G~DL~~~~~Isl~eAl~G~~~~i~tldG-~i~v~ip~g--~~ 307 (378)
T PRK14283 231 TGSRLRVSGEGEMGDRGGEPGDLYVVIKVKPHKIFRREGANLYYEKPISFVQAALGDTVDVPTIDG-PVELKIPAG--TQ 307 (378)
T ss_pred CCcEEEEeccccCCCCCCCCccEEEEEEEEcCCCEEEecCCEEEEEecCHHHHhcCCeEEEEcCCc-eEEEEeCCC--CC
Confidence 999999999999864 56789999999999999999999999999999999999999999999999 589999976 34
Q ss_pred CCccc------C----CCCCccEEEEEEEEEe
Q 019908 311 PGIYF------D----NFTSVNLYLHEYCFLW 332 (334)
Q Consensus 311 ~g~~~------~----~~~~GdL~v~~~V~~p 332 (334)
++... + ...+|||||+|+|.||
T Consensus 308 ~g~~~ri~g~G~p~~~~~~~GdL~v~~~v~~P 339 (378)
T PRK14283 308 SGTTFRLKGHGMPSLRWSGKGNLYVKVKVVVP 339 (378)
T ss_pred CCCEEEECCCCCCCCCCCCCCCEEEEEEEEeC
Confidence 55432 2 2357999999999999
No 28
>PRK14289 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=7.1e-69 Score=518.35 Aligned_cols=318 Identities=33% Similarity=0.671 Sum_probs=267.6
Q ss_pred CCccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCh----HHHHHHHHHHhhcCCCcccchhcccChhhhhcCCCC
Q 019908 9 SNNTKYYEILGVSKSATEDELKKAYRKAAMKNHPDKGGDP----EKFKELGQAYEVLSDPEKRDIYDQYGEDALKEGMGG 84 (334)
Q Consensus 9 ~~~~~~y~iLgv~~~a~~~eik~ayr~la~~~hPd~~~~~----~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~~~~~~ 84 (334)
++.+|||++|||+++|+.+|||+|||+||++||||+|++. ++|++|++||++|+||.+|++||+||+++++.+.+.
T Consensus 2 ~~~~~~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~yD~~G~~~~~~~~~~ 81 (386)
T PRK14289 2 AEKRDYYEVLGVSKTATVDEIKKAYRKKAIQYHPDKNPGDKEAEEKFKEAAEAYDVLSDPDKRSRYDQFGHAGVGGAAGG 81 (386)
T ss_pred CccCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccccCCCC
Confidence 3468999999999999999999999999999999999743 799999999999999999999999998876532111
Q ss_pred C---CCCCCcchhh---ccccCCC--CCC---C-CCCCCCCcccccccEEEeeeeceeeeecCcccccccceeeeCCCCC
Q 019908 85 A---GAAHNPFDIF---ESFFGGG--TFG---A-GGSSRGRRRKQGEDVVHTLKVSLEDLYNGTTKKLSLSRNILCPKCK 152 (334)
Q Consensus 85 ~---~~~~~~~d~f---~~~Fg~~--~~~---~-~~~~~~~~~~~~~di~~~l~~sl~e~~~G~~~~i~~~~~~~C~~C~ 152 (334)
+ +++.++.++| +++|++. +++ . ++........++.|+.+.+.+||+|+|+|+++++.+++.+.|+.|+
T Consensus 82 ~~~~~~~~~~~~~f~~f~~~fg~~~gg~~~~~~~~~~~~~~~~~~g~di~~~l~vsLee~~~G~~~~i~~~r~~~C~~C~ 161 (386)
T PRK14289 82 GGFSGEGMSMEDIFSMFGDIFGGHGGGFGGFGGFGGGGSQQRVFRGSDLRVKVKLNLKEISTGVEKKFKVKKYVPCSHCH 161 (386)
T ss_pred CCCCCCCcChhhhhHHhhhhhcccccCcccccccccccccCCCCCCCCeEEEEEEEHHHhhCCeEEEEEEEeecccCCCC
Confidence 1 1112333443 3335421 110 0 0001112234688999999999999999999999999999999999
Q ss_pred CCCCccCC-cccCCCCCCCcEEEEEEeeccceeeEEEEeCCCCccceEEEccCCCCCccCCCceeEEeEEEEEEeccCcc
Q 019908 153 GKGSKSGA-LGKCYGCQGTGMKITTRQIGLGMIQQMQHVCPECRGAGEVISERDKCPQCKANKVTQEKKVLEVHVEKGMQ 231 (334)
Q Consensus 153 G~G~~~~~-~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~~~~~~v~Ip~G~~ 231 (334)
|+|..... ..+|+.|+|+|.++..+++++|+++. +.+|+.|.|+|+++. .+|+.|.|++++.+.++++|+||+|++
T Consensus 162 G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~-~~~C~~C~G~G~~~~--~~C~~C~G~g~v~~~~~~~V~Ip~G~~ 238 (386)
T PRK14289 162 GTGAEGNNGSETCPTCKGSGSVTRVQNTILGTMQT-QSTCPTCNGEGKIIK--KKCKKCGGEGIVYGEEVITVKIPAGVA 238 (386)
T ss_pred CCCCCCCCCCCcCCCCcCeEEEEEEEecccceEEE-EEecCCCCccccccC--cCCCCCCCCcEEeeeEEEEEEeCCCCC
Confidence 99987654 46799999999999999999999975 899999999999986 899999999999999999999999999
Q ss_pred CCcEEEEecCcCCC-CCCCCcCEEEEEEEEeCCCceeecCcEEEEEecCHHHHhCCCeEEEecCCCCeEEEEcCCCceec
Q 019908 232 HGQKIAFEGQADEA-PDTITGDIVFILQLKEHPKFKRKFDDLYVDHTLSLTEALCGFQFALTHLDGRQLLIKSNPGEIIK 310 (334)
Q Consensus 232 ~G~~i~l~g~G~~~-~~~~~GDL~v~i~v~~~~~f~r~g~dL~~~~~I~l~~al~G~~~~i~tldG~~l~v~i~~g~~i~ 310 (334)
+|++|+|+|+|++. +++.+|||+|+|++++|+.|+|+++||++++.|+|.+|++|+++.|+|+||+ +.|+||++ ++
T Consensus 239 ~G~~i~l~g~G~~~~~~~~~GDL~v~v~v~~~~~f~r~g~DL~~~~~Isl~eAl~G~~~~i~~ldg~-i~v~ip~g--~~ 315 (386)
T PRK14289 239 EGMQLSMNGKGNAGKHGGVNGDLLVVIEEEPHPELIRDENDLIYNLLLSVPTAALGGAVEVPTIDGK-AKVKIEAG--TQ 315 (386)
T ss_pred CCCEEEEeccccCCCCCCCCccEEEEEEEecCCcccccccceeEEeccCHHHHhCCCeEEeecCCce-EEEEECCc--cC
Confidence 99999999999986 4667899999999999999999999999999999999999999999999997 89999987 34
Q ss_pred CCccc------C----CCCCccEEEEEEEEEe
Q 019908 311 PGIYF------D----NFTSVNLYLHEYCFLW 332 (334)
Q Consensus 311 ~g~~~------~----~~~~GdL~v~~~V~~p 332 (334)
++... . ...+|||||+|+|+||
T Consensus 316 ~g~~~ri~g~G~p~~~~~~~GDL~v~~~v~~P 347 (386)
T PRK14289 316 PGKVLRLRNKGLPSVNGYGTGDLLVNVSVYIP 347 (386)
T ss_pred CCcEEEECCCCcCCCCCCCCCcEEEEEEEEeC
Confidence 54432 1 2357999999999999
No 29
>PRK14293 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=5.4e-69 Score=516.92 Aligned_cols=316 Identities=33% Similarity=0.605 Sum_probs=270.2
Q ss_pred ccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCh---HHHHHHHHHHhhcCCCcccchhcccChhhhhcCCC--CC
Q 019908 11 NTKYYEILGVSKSATEDELKKAYRKAAMKNHPDKGGDP---EKFKELGQAYEVLSDPEKRDIYDQYGEDALKEGMG--GA 85 (334)
Q Consensus 11 ~~~~y~iLgv~~~a~~~eik~ayr~la~~~hPd~~~~~---~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~~~~~--~~ 85 (334)
..|||+||||+++|+.+|||+|||+||++||||+|+++ ++|++|++||++|+||.+|+.||+||++++..+.+ +.
T Consensus 2 ~~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~a~~~f~~i~~Ay~vL~~~~~R~~yd~~g~~g~~~~~~~~~~ 81 (374)
T PRK14293 2 AADYYEILGVSRDADKDELKRAYRRLARKYHPDVNKEPGAEDRFKEINRAYEVLSDPETRARYDQFGEAGVSGAAGFPDM 81 (374)
T ss_pred CCChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCcCHHHHHHHHHHHHHHHhchHHHHHHhhccccccccCCCcCCc
Confidence 36999999999999999999999999999999999754 89999999999999999999999999887653211 11
Q ss_pred CCCCCcchhhccccCCCC-CCCCC-CCCCCcccccccEEEeeeeceeeeecCcccccccceeeeCCCCCCCCCccCC-cc
Q 019908 86 GAAHNPFDIFESFFGGGT-FGAGG-SSRGRRRKQGEDVVHTLKVSLEDLYNGTTKKLSLSRNILCPKCKGKGSKSGA-LG 162 (334)
Q Consensus 86 ~~~~~~~d~f~~~Fg~~~-~~~~~-~~~~~~~~~~~di~~~l~~sl~e~~~G~~~~i~~~~~~~C~~C~G~G~~~~~-~~ 162 (334)
++..++.|+|++||++.+ +++.+ +.+.+++.++.|+.+.|.+||+|+|.|+++++.+++.+.|+.|+|+|..... ..
T Consensus 82 ~~~~~~~d~f~~~fg~~~~~~~~~~~~~~~~~~kg~di~~~l~vsLee~~~G~~k~i~~~r~~~C~~C~G~G~~~~~~~~ 161 (374)
T PRK14293 82 GDMGGFADIFETFFSGFGGAGGQGGRRRRRGPQRGDDLRYDLKLDFREAIFGGEKEIRIPHLETCETCRGSGAKPGTGPT 161 (374)
T ss_pred ccccchHHHHHHHhcccCCCCCCCccccccCccCCCCeEEEEEeeHHHHhCCceEEEEeeccccCCCCCCcCCCCCCCCe
Confidence 112234588999986311 11000 0111233568899999999999999999999999999999999999998765 46
Q ss_pred cCCCCCCCcEEEEEEeeccceeeEEEEeCCCCccceEEEccCCCCCccCCCceeEEeEEEEEEeccCccCCcEEEEecCc
Q 019908 163 KCYGCQGTGMKITTRQIGLGMIQQMQHVCPECRGAGEVISERDKCPQCKANKVTQEKKVLEVHVEKGMQHGQKIAFEGQA 242 (334)
Q Consensus 163 ~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~~~~~~v~Ip~G~~~G~~i~l~g~G 242 (334)
+|+.|+|+|.+...+++++|++++ +.+|+.|.|+|+++. .+|+.|.|.+++.+.++++|+||||+++|++|+|+|+|
T Consensus 162 ~C~~C~G~G~~~~~~~~~~g~~~~-~~~C~~C~G~G~~~~--~~C~~C~G~g~v~~~~~~~V~IppG~~~G~~i~l~g~G 238 (374)
T PRK14293 162 TCSTCGGAGQVRRATRTPFGSFTQ-VSECPTCNGTGQVIE--DPCDACGGQGVKQVTKKLKINIPAGVDTGTRLRVSGEG 238 (374)
T ss_pred eCCCCCCcceEEEEEecCcceEEE-EeeCCCCCcceeEec--cCCCCCCCCcccccceEEEEEeCCCCCCCCEEEEccCc
Confidence 799999999999999999998886 589999999999986 89999999999999999999999999999999999999
Q ss_pred CCCC-CCCCcCEEEEEEEEeCCCceeecCcEEEEEecCHHHHhCCCeEEEecCCCCeEEEEcCCCceecCCccc------
Q 019908 243 DEAP-DTITGDIVFILQLKEHPKFKRKFDDLYVDHTLSLTEALCGFQFALTHLDGRQLLIKSNPGEIIKPGIYF------ 315 (334)
Q Consensus 243 ~~~~-~~~~GDL~v~i~v~~~~~f~r~g~dL~~~~~I~l~~al~G~~~~i~tldG~~l~v~i~~g~~i~~g~~~------ 315 (334)
++.. +..+|||+|+|++++|+.|+|+|+||+++++|||.||++|+++.|+||||+ +.|+||++ ++++..+
T Consensus 239 ~~~~~~~~~GDL~v~v~v~~~~~f~r~g~DL~~~~~Isl~eAl~G~~~~i~~ldG~-~~i~ip~~--~~~g~~~ri~g~G 315 (374)
T PRK14293 239 DAGLRGGPPGDLYVYLFVKNDPEFRRDGINILSEIKISYLQAILGDTLEVDTVDGP-VELTIPAG--TQPNTVLTLENKG 315 (374)
T ss_pred cCCCCCCCCcCEEEEEEEeCCCccChhhhceEEEeccCHHHHhCCCEEEecCCCCC-EEEEeCCC--CCCCCEEEECCCC
Confidence 9864 566899999999999999999999999999999999999999999999997 78898876 4555433
Q ss_pred CC-----CCCccEEEEEEEEEe
Q 019908 316 DN-----FTSVNLYLHEYCFLW 332 (334)
Q Consensus 316 ~~-----~~~GdL~v~~~V~~p 332 (334)
+| +.+|||||+|+|.||
T Consensus 316 ~p~~~~~~~~GDL~v~~~v~~P 337 (374)
T PRK14293 316 VPRLGNPVARGDHLITVKVKIP 337 (374)
T ss_pred CCCCCCCCCcCCEEEEEEEECC
Confidence 22 247999999999999
No 30
>PRK14292 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.3e-68 Score=514.33 Aligned_cols=312 Identities=32% Similarity=0.645 Sum_probs=268.4
Q ss_pred cccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCh---HHHHHHHHHHhhcCCCcccchhcccChhhhhcCCCC---C
Q 019908 12 TKYYEILGVSKSATEDELKKAYRKAAMKNHPDKGGDP---EKFKELGQAYEVLSDPEKRDIYDQYGEDALKEGMGG---A 85 (334)
Q Consensus 12 ~~~y~iLgv~~~a~~~eik~ayr~la~~~hPd~~~~~---~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~~~~~~---~ 85 (334)
.|||++|||+++|+.+|||+|||+||++||||+++++ ++|++|++||++|+||.+|+.||+||+++.....++ +
T Consensus 2 ~d~y~~Lgv~~~a~~~~ik~ayr~l~~~~hpD~~~~~~a~~~~~~i~~Ay~vL~d~~~r~~yd~~G~~~~~~~~~~~~~~ 81 (371)
T PRK14292 2 MDYYELLGVSRTASADEIKSAYRKLALKYHPDRNKEKGAAEKFAQINEAYAVLSDAEKRAHYDRFGTAPGAGMPGGDPFG 81 (371)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCChhHHHHHHHHHHHHHHhcchhhhhhHhhcCCcccccccCCcccC
Confidence 5899999999999999999999999999999999864 899999999999999999999999998763211011 1
Q ss_pred CCCCCcchhhccccCCCCCCCCCCCCCCcccccccEEEeeeeceeeeecCcccccccceeeeCCCCCCCCCccCC--ccc
Q 019908 86 GAAHNPFDIFESFFGGGTFGAGGSSRGRRRKQGEDVVHTLKVSLEDLYNGTTKKLSLSRNILCPKCKGKGSKSGA--LGK 163 (334)
Q Consensus 86 ~~~~~~~d~f~~~Fg~~~~~~~~~~~~~~~~~~~di~~~l~~sl~e~~~G~~~~i~~~~~~~C~~C~G~G~~~~~--~~~ 163 (334)
+.++++.|+|+.|||++++++ ....+++.++.|+.+.+.+||+|+++|+++++.+++.+.|+.|+|+|..... ..+
T Consensus 82 ~~~~d~~d~f~~~fg~~~~~~--~~~~~~~~~g~d~~~~l~~sLee~~~G~~~~v~~~r~~~C~~C~G~G~~~~~~~~~~ 159 (371)
T PRK14292 82 GMGFDPMDIFEQLFGGAGFGG--GRGRRGPARGDDLETEARITLEQARAGEEVEVEVDRLTECEHCHGSRTEPGGKPPKT 159 (371)
T ss_pred ccCCChHHHHHHhhCCCCcCC--CCCcccccCCCCeEEEEeccHHHHcCCeEEEEEEEeeecCCCCcccccCCCCCCCcc
Confidence 112356689999997532211 1111234568899999999999999999999999999999999999987654 467
Q ss_pred CCCCCCCcEEEEEEeeccceeeEEEEeCCCCccceEEEccCCCCCccCCCceeEEeEEEEEEeccCccCCcEEEEecCcC
Q 019908 164 CYGCQGTGMKITTRQIGLGMIQQMQHVCPECRGAGEVISERDKCPQCKANKVTQEKKVLEVHVEKGMQHGQKIAFEGQAD 243 (334)
Q Consensus 164 C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~~~~~~v~Ip~G~~~G~~i~l~g~G~ 243 (334)
|+.|+|+|.+...+++.+|++++ +.+|+.|.|+|+.+. .+|+.|.|.+++.+.++++|.||+|+++|++|+|+|+|+
T Consensus 160 C~~C~G~G~~~~~~~~~~g~~~~-~~~C~~C~G~G~~~~--~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~~~G~G~ 236 (371)
T PRK14292 160 CPTCRGAGAVRAQARTIFGVVET-QQPCPTCRGEGQIIT--DPCTVCRGRGRTLKAETVKVKLPRGIDEGYRIRVAGMGN 236 (371)
T ss_pred CCCCCCccEEEEEEeccCceEEE-eeecCCCcccceecC--CCCCCCCCceEEeecceEEEEECCCCCCCcEEEEecCcC
Confidence 99999999999888888888875 789999999999986 999999999999999999999999999999999999999
Q ss_pred CCCCCCCcCEEEEEEEEeCCCceeecCcEEEEEecCHHHHhCCCeEEEecCCCCeEEEEcCCCceecCCccc------C-
Q 019908 244 EAPDTITGDIVFILQLKEHPKFKRKFDDLYVDHTLSLTEALCGFQFALTHLDGRQLLIKSNPGEIIKPGIYF------D- 316 (334)
Q Consensus 244 ~~~~~~~GDL~v~i~v~~~~~f~r~g~dL~~~~~I~l~~al~G~~~~i~tldG~~l~v~i~~g~~i~~g~~~------~- 316 (334)
+.+++. |||||+|++++|+.|+|+|+||++++.|+|.+|++|+++.|+||||+. .|.||++ ++++... +
T Consensus 237 ~~~~~~-GDL~v~i~v~~h~~f~r~g~dL~~~~~isl~eAl~G~~~~i~tldG~~-~v~ip~g--~~~g~~~~i~g~G~p 312 (371)
T PRK14292 237 EGPGGN-GDLYVHIEMEPHPELRREQEHLIYEARIGFAKAALGGQITVPTLDGPQ-VIEVKPG--TQHGDLHRLRGQGMP 312 (371)
T ss_pred CCCCCC-CCEEEEEEEecCCccccchhceeEEeccCHHHHhCCCeEEEECCCCCE-EEecCCC--cCCCcEEEECCCCCC
Confidence 977665 999999999999999999999999999999999999999999999984 7899887 3555432 1
Q ss_pred ---CCCCccEEEEEEEEEe
Q 019908 317 ---NFTSVNLYLHEYCFLW 332 (334)
Q Consensus 317 ---~~~~GdL~v~~~V~~p 332 (334)
...+|||||+|+|.||
T Consensus 313 ~~~~~~~GDL~V~~~v~~P 331 (371)
T PRK14292 313 RLQGAGTGDLIVEYEIAVP 331 (371)
T ss_pred CCCCCCCCCEEEEEEEECC
Confidence 2347999999999999
No 31
>PRK14299 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=2.7e-53 Score=395.18 Aligned_cols=240 Identities=37% Similarity=0.617 Sum_probs=196.4
Q ss_pred ccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCh---HHHHHHHHHHhhcCCCcccchhcccChhhhhcCCCC---
Q 019908 11 NTKYYEILGVSKSATEDELKKAYRKAAMKNHPDKGGDP---EKFKELGQAYEVLSDPEKRDIYDQYGEDALKEGMGG--- 84 (334)
Q Consensus 11 ~~~~y~iLgv~~~a~~~eik~ayr~la~~~hPd~~~~~---~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~~~~~~--- 84 (334)
..|||+||||+++||.+|||+|||+||++||||+|+++ ++|++|++||++|+|+.+|+.||+||++++..++.+
T Consensus 3 ~~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~kr~~yD~~g~~~~~~~~~~~~~ 82 (291)
T PRK14299 3 YKDYYAILGVPKNASQDEIKKAFKKLARKYHPDVNKSPGAEEKFKEINEAYTVLSDPEKRRIYDTYGTTAASAGWQGPPP 82 (291)
T ss_pred CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhcCHHHHHHHHhcCCccccccccCCCC
Confidence 47999999999999999999999999999999999754 899999999999999999999999998754322110
Q ss_pred ---C-CC-----CCCcchhhccccCCC-CCCCCC---CCCCCcccccccEEEeeeeceeeeecCcccccccceeeeCCCC
Q 019908 85 ---A-GA-----AHNPFDIFESFFGGG-TFGAGG---SSRGRRRKQGEDVVHTLKVSLEDLYNGTTKKLSLSRNILCPKC 151 (334)
Q Consensus 85 ---~-~~-----~~~~~d~f~~~Fg~~-~~~~~~---~~~~~~~~~~~di~~~l~~sl~e~~~G~~~~i~~~~~~~C~~C 151 (334)
+ ++ ..++.++|++|||+. ++++.+ ......++++.|+.+.+.+||+|++.|+++.+.+.
T Consensus 83 ~~~~~~~~~~~~~~~~~d~f~~~fgg~~~~~~~g~~~~~~~~~~~~g~dl~~~l~isL~ea~~G~~~~i~l~-------- 154 (291)
T PRK14299 83 GPPGGGDFSGFNVGDFSDFFQQLFGGRGGFGGFGDLFGSVGRRARKGRDLEAELPLTLEEAYRGGEKVVEVA-------- 154 (291)
T ss_pred CCCCCCCccccCcCCHHHHHHHHhCCCCCCCCcccccccccCCCCCCCCEEEEEEecHHHHhCCCeEEEeeC--------
Confidence 0 11 124568899999742 111100 00012245688999999999999999998875431
Q ss_pred CCCCCccCCcccCCCCCCCcEEEEEEeeccceeeEEEEeCCCCccceEEEccCCCCCccCCCceeEEeEEEEEEeccCcc
Q 019908 152 KGKGSKSGALGKCYGCQGTGMKITTRQIGLGMIQQMQHVCPECRGAGEVISERDKCPQCKANKVTQEKKVLEVHVEKGMQ 231 (334)
Q Consensus 152 ~G~G~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~~~~~~v~Ip~G~~ 231 (334)
.++++|+||||++
T Consensus 155 -------------------------------------------------------------------g~~~~V~Ip~G~~ 167 (291)
T PRK14299 155 -------------------------------------------------------------------GERLSVRIPPGVR 167 (291)
T ss_pred -------------------------------------------------------------------CEEEEEecCCCcC
Confidence 1358999999999
Q ss_pred CCcEEEEecCcCCCCCCCCcCEEEEEEEEeCCCceeecCcEEEEEecCHHHHhCCCeEEEecCCCCeEEEEcCCCceecC
Q 019908 232 HGQKIAFEGQADEAPDTITGDIVFILQLKEHPKFKRKFDDLYVDHTLSLTEALCGFQFALTHLDGRQLLIKSNPGEIIKP 311 (334)
Q Consensus 232 ~G~~i~l~g~G~~~~~~~~GDL~v~i~v~~~~~f~r~g~dL~~~~~I~l~~al~G~~~~i~tldG~~l~v~i~~g~~i~~ 311 (334)
+|++|+|+|+|++. |||+|+|++++|+.|+|+|+||+++++|||.+|++|+++.|+||||+ +.|+||++ +++
T Consensus 168 ~G~~ir~~g~G~~~-----GDL~v~i~v~~h~~f~R~G~DL~~~~~Isl~eAl~G~~~~v~tldG~-~~v~ip~~--~~~ 239 (291)
T PRK14299 168 EGQVIRLAGKGRQG-----GDLYLVVRLLPHPVFRLEGDDLYATVDVPAPIAVVGGKVRVMTLDGP-VEVTIPPR--TQA 239 (291)
T ss_pred CCcEEEECCCCCCC-----CCEEEEEEEcCCCCeEEECCEEEEEEecCHHHHhCCCEEEEECCCCC-EEEEeCCC--cCC
Confidence 99999999999863 99999999999999999999999999999999999999999999997 88999876 456
Q ss_pred Cccc------C---CCCCccEEEEEEEEEee
Q 019908 312 GIYF------D---NFTSVNLYLHEYCFLWL 333 (334)
Q Consensus 312 g~~~------~---~~~~GdL~v~~~V~~p~ 333 (334)
|... + ++.+|||||+|+|.||-
T Consensus 240 g~~~rl~g~G~p~~~~~~GDL~v~~~V~~P~ 270 (291)
T PRK14299 240 GRKLRLKGKGWPRGPAGRGDQYAEVRITIPT 270 (291)
T ss_pred CCEEEECCCCCCCCCCCCCCEEEEEEEECCC
Confidence 5533 2 24689999999999993
No 32
>PRK10266 curved DNA-binding protein CbpA; Provisional
Probab=100.00 E-value=2.2e-51 Score=385.16 Aligned_cols=254 Identities=29% Similarity=0.449 Sum_probs=202.5
Q ss_pred ccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCh---HHHHHHHHHHhhcCCCcccchhcccChh----hhhcCC-
Q 019908 11 NTKYYEILGVSKSATEDELKKAYRKAAMKNHPDKGGDP---EKFKELGQAYEVLSDPEKRDIYDQYGED----ALKEGM- 82 (334)
Q Consensus 11 ~~~~y~iLgv~~~a~~~eik~ayr~la~~~hPd~~~~~---~~f~~i~~Ay~~L~d~~~r~~YD~~G~~----~~~~~~- 82 (334)
.+|||++|||+++|+.+|||+|||+||++||||+++++ ++|++|++||++|+|+.+|+.||+||.. ++....
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~k~HPD~~~~~~~~~~f~~i~~Ay~~L~~~~kr~~yD~~g~~~~~~~~~~~~~ 82 (306)
T PRK10266 3 LKDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAEYDQLWQHRNDPQFNRQFQ 82 (306)
T ss_pred cCChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhhhHHHHHHHHHhhccccCcccccccc
Confidence 47999999999999999999999999999999998753 8999999999999999999999999854 222110
Q ss_pred -CCC--CCCCCcchhhccccCCCCCCCCCCCCCCcccccccEEEeeeeceeeeecCcccccccceeeeCCCCCCCCCccC
Q 019908 83 -GGA--GAAHNPFDIFESFFGGGTFGAGGSSRGRRRKQGEDVVHTLKVSLEDLYNGTTKKLSLSRNILCPKCKGKGSKSG 159 (334)
Q Consensus 83 -~~~--~~~~~~~d~f~~~Fg~~~~~~~~~~~~~~~~~~~di~~~l~~sl~e~~~G~~~~i~~~~~~~C~~C~G~G~~~~ 159 (334)
+++ ....++.++|+.|||+++ +.+ .....+++.|+.+++.+||+|++.|+.+++.+.+.+ |
T Consensus 83 ~~~~~~~~~~~~~~~f~~~~g~~~---~~~-~~~~~~kg~di~~~v~isLee~~~G~~k~i~~~~~~----~-------- 146 (306)
T PRK10266 83 HGDGQSFNAEDFDDIFSSIFGQHA---RQS-RQRPAARGHDIEIEVAVFLEETLTEHKRTISYNLPV----Y-------- 146 (306)
T ss_pred cCCCCCCCCCCHHHHHHHHhCCCC---CCC-CCCCCCCCCceEEEEEEEHHHhcCCceEEEEEeccc----c--------
Confidence 111 112356688999887421 111 112334688999999999999999999988776532 1
Q ss_pred CcccCCCCCCCcEEEEEEeeccceeeEEEEeCCCCccceEEEccCCCCCccCCCceeEEeEEEEEEeccCccCCcEEEEe
Q 019908 160 ALGKCYGCQGTGMKITTRQIGLGMIQQMQHVCPECRGAGEVISERDKCPQCKANKVTQEKKVLEVHVEKGMQHGQKIAFE 239 (334)
Q Consensus 160 ~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~~~~~~v~Ip~G~~~G~~i~l~ 239 (334)
.|.|... ....++++|+||+|+++|++|+|+
T Consensus 147 --------~g~G~~~-----------------------------------------~~~~~~~~V~Ip~G~~~G~~i~~~ 177 (306)
T PRK10266 147 --------NAFGMIE-----------------------------------------QEIPKTLNVKIPAGVGNGQRIRLK 177 (306)
T ss_pred --------cCCCeEE-----------------------------------------EeeeEEEEEEECCCCcCCcEEEEe
Confidence 1222110 012357999999999999999999
Q ss_pred cCcCCCC-CCCCcCEEEEEEEEeCCCceeecCcEEEEEecCHHHHhCCCeEEEecCCCCeEEEEcCCCceecCCccc---
Q 019908 240 GQADEAP-DTITGDIVFILQLKEHPKFKRKFDDLYVDHTLSLTEALCGFQFALTHLDGRQLLIKSNPGEIIKPGIYF--- 315 (334)
Q Consensus 240 g~G~~~~-~~~~GDL~v~i~v~~~~~f~r~g~dL~~~~~I~l~~al~G~~~~i~tldG~~l~v~i~~g~~i~~g~~~--- 315 (334)
|+|++.. +..+|||+|+|++++|+.|+|+|+||++++.|||.+|++|+++.|+|+||+ +.|+||++ +++|...
T Consensus 178 g~G~~~~~~~~~GDl~v~i~v~ph~~f~r~g~DL~~~~~Isl~~al~G~~~~i~~~~g~-v~v~ip~g--~~~g~~~ri~ 254 (306)
T PRK10266 178 GQGTPGENGGPNGDLWLVIHIAPHPLFDIVGQDLEIVVPLAPWEAALGAKVTVPTLKES-ILLTIPPG--SQAGQRLRVK 254 (306)
T ss_pred cCCcCCCCCCCCccEEEEEEEcCCCCeEEeCCceEEEEecCHHHHhCCCEEEeeCCCcc-EEEEeCCC--cCCCCEEEEC
Confidence 9999864 457899999999999999999999999999999999999999999999998 88999987 3454432
Q ss_pred -----CCCCCccEEEEEEEEEe
Q 019908 316 -----DNFTSVNLYLHEYCFLW 332 (334)
Q Consensus 316 -----~~~~~GdL~v~~~V~~p 332 (334)
.++.+|||||+|+|.+|
T Consensus 255 g~G~p~~~~~GdL~v~~~v~~P 276 (306)
T PRK10266 255 GKGLVSKKQTGDLYAVLKIVMP 276 (306)
T ss_pred CCCCCCCCCCCCEEEEEEEECC
Confidence 22458999999999999
No 33
>KOG0713 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.4e-42 Score=313.23 Aligned_cols=295 Identities=38% Similarity=0.602 Sum_probs=222.1
Q ss_pred CCCccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCh----HHHHHHHHHHhhcCCCcccchhcccChhhhhcCC-
Q 019908 8 RSNNTKYYEILGVSKSATEDELKKAYRKAAMKNHPDKGGDP----EKFKELGQAYEVLSDPEKRDIYDQYGEDALKEGM- 82 (334)
Q Consensus 8 ~~~~~~~y~iLgv~~~a~~~eik~ayr~la~~~hPd~~~~~----~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~~~~- 82 (334)
....+|||++|||+++|+..|||+|||+||++||||+||+. ++|++|+.||||||||++|+.||+||++++....
T Consensus 12 v~~~rDfYelLgV~k~Asd~eIKkAYRKLALk~HPDkNpddp~A~e~F~~in~AYEVLsDpekRk~YD~~GEegL~~~~~ 91 (336)
T KOG0713|consen 12 VLAGRDFYELLGVPKNASDQEIKKAYRKLALKYHPDKNPDDPNANEKFKEINAAYEVLSDPEKRKHYDTYGEEGLKDENK 91 (336)
T ss_pred hhcCCCHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHhhhHhhhccccc
Confidence 34679999999999999999999999999999999999964 8999999999999999999999999999987421
Q ss_pred -CCCCCCCCcchhhccccCCCCCCCCCCCCCCcccccccEEEeeeeceeeeecCcccccccceeeeCCCCCCCCCccCCc
Q 019908 83 -GGAGAAHNPFDIFESFFGGGTFGAGGSSRGRRRKQGEDVVHTLKVSLEDLYNGTTKKLSLSRNILCPKCKGKGSKSGAL 161 (334)
Q Consensus 83 -~~~~~~~~~~d~f~~~Fg~~~~~~~~~~~~~~~~~~~di~~~l~~sl~e~~~G~~~~i~~~~~~~C~~C~G~G~~~~~~ 161 (334)
+.++.++ .++|+.||+.-++..++.-......++.++...++.+++++|.|...+....+.+.|. |.|+-.
T Consensus 92 ~~~~g~~~--~~~f~~~f~dfg~~~~g~~~~e~~~~g~~V~~~~e~~~~h~y~~~~~e~~r~~~v~~~-~~g~~~----- 163 (336)
T KOG0713|consen 92 DGEGGGGG--NDIFSAFFGDFGVTVGGNPLEEALPKGSDVSSDLEKQLEHFYMGNFVEEVREKGVYKP-APGTRK----- 163 (336)
T ss_pred ccccCCcc--cchHHHhhcccccccCCCcccCCCCCCceEEeehhhchhhhhcccHHHHHhccCceee-cCcccc-----
Confidence 1111111 4566666653221111111122356788999999999999999987776655555542 122111
Q ss_pred ccCCCCCCCcEEEEEEeeccceeeEEEEeCCCCccceEEEccCCCCCccCCCceeEEeEEEEEEeccCccCCcEEEEecC
Q 019908 162 GKCYGCQGTGMKITTRQIGLGMIQQMQHVCPECRGAGEVISERDKCPQCKANKVTQEKKVLEVHVEKGMQHGQKIAFEGQ 241 (334)
Q Consensus 162 ~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~~~~~~v~Ip~G~~~G~~i~l~g~ 241 (334)
-.|. ..+..++.++|+++.++ ...|..|.+.++..+....++.+..|...+....+..+
T Consensus 164 ~~~~------~~~~~~~~~~g~~~~~q---------------~~~~~~~~~~k~~~e~~~~~~~~~~~~~~~~~~~~~~~ 222 (336)
T KOG0713|consen 164 CNCR------LEMFTQQEGPGRFQMLQ---------------EAVCDECPNVKLVLEEDPLEVEFERGDADGPEEIFELE 222 (336)
T ss_pred cCCh------hhheeeccCCChhhhhh---------------hhhhccCCccceeecCCceeeeeeecccCCceeeeecc
Confidence 0111 12333445555554433 25566666777788899999999999999999999999
Q ss_pred cCCCCCCCCcCEEEEEEEEeCCCceeecCcEEEEEecCHHHHhCCCeEEEecCCCCeEEEEcCCCceecCCccc------
Q 019908 242 ADEAPDTITGDIVFILQLKEHPKFKRKFDDLYVDHTLSLTEALCGFQFALTHLDGRQLLIKSNPGEIIKPGIYF------ 315 (334)
Q Consensus 242 G~~~~~~~~GDL~v~i~v~~~~~f~r~g~dL~~~~~I~l~~al~G~~~~i~tldG~~l~v~i~~g~~i~~g~~~------ 315 (334)
|.+..-+.+||+.+.+...+|+.|.|++++|++.+.+++.+++.|+..++.++|+..+.+..... ..|+...
T Consensus 223 ~~~h~~~~~gD~~f~~~~y~~~~~~~k~~~~~~n~~~sl~~~~v~~~~e~~~~d~~~~~~~r~~~--~~p~~~~~~~~~~ 300 (336)
T KOG0713|consen 223 GEPHIDGVPGDLFFKIVSYTHPRFERKGDDLYTNVTISLEAALVGFEMEILHLDGHYVEVSRKKI--TWPGARTRKKGEG 300 (336)
T ss_pred CCcceecccCCceeeeEEecccceecCccchhhHHHHHHHHHHHHHHHHhhccchhhhhhhhhhc--cccchhhhhhhcc
Confidence 99888888999999999999999999999999999999999999999999999998655543211 1222111
Q ss_pred -----CCCCCccEEEEEEEEEee
Q 019908 316 -----DNFTSVNLYLHEYCFLWL 333 (334)
Q Consensus 316 -----~~~~~GdL~v~~~V~~p~ 333 (334)
.....|++|++|.+.+|.
T Consensus 301 ~~~l~~~~~~~~~~~t~~~~~~~ 323 (336)
T KOG0713|consen 301 MPLLKNRNEKGNLYVTFDVEFPK 323 (336)
T ss_pred chhhhccchhcceeEEecccCcc
Confidence 345689999999999983
No 34
>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.4e-40 Score=304.90 Aligned_cols=242 Identities=34% Similarity=0.645 Sum_probs=206.4
Q ss_pred cccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCh---HHHHHHHHHHhhcCCCcccchhcccChhhhhcCCCCCCCC
Q 019908 12 TKYYEILGVSKSATEDELKKAYRKAAMKNHPDKGGDP---EKFKELGQAYEVLSDPEKRDIYDQYGEDALKEGMGGAGAA 88 (334)
Q Consensus 12 ~~~y~iLgv~~~a~~~eik~ayr~la~~~hPd~~~~~---~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~~~~~~~~~~ 88 (334)
.|||+||||+++|+..|||.||++||++||||.|.+. ++|++|.+|||+|+|+++|+.||+++..+.. +..
T Consensus 43 ~d~Y~vLgv~~~At~~EIK~Af~~LaKkyHPD~n~~~~a~~kF~eI~~AYEiLsd~eKR~~YD~~~~~~~~------~~~ 116 (288)
T KOG0715|consen 43 EDYYKVLGVSRNATLSEIKSAFRKLAKKYHPDVNKDKEASKKFKEISEAYEILSDEEKRQEYDVYGLEQHG------EFG 116 (288)
T ss_pred cchhhhhCcCCCCCHHHHHHHHHHHHHhhCCCCCCCcchhhHHHHHHHHHHHhcCHHHHHHHHHhhhhccc------ccc
Confidence 3999999999999999999999999999999999865 8999999999999999999999999976511 112
Q ss_pred CCcchhhccccCCCCCCCCCCCCCCcccccccEEEeeeeceeeeecCcccccccceeeeCCCCCCCCCccCCc-ccCCCC
Q 019908 89 HNPFDIFESFFGGGTFGAGGSSRGRRRKQGEDVVHTLKVSLEDLYNGTTKKLSLSRNILCPKCKGKGSKSGAL-GKCYGC 167 (334)
Q Consensus 89 ~~~~d~f~~~Fg~~~~~~~~~~~~~~~~~~~di~~~l~~sl~e~~~G~~~~i~~~~~~~C~~C~G~G~~~~~~-~~C~~C 167 (334)
.+++++|..+|++. ......+.+..+.+.++|+++..|..+.+.+.....|.+|.|.|...+.. ..|..|
T Consensus 117 g~~~~~~~~~~~~~---------~~~~~~~~~~~~d~~~~f~~A~~g~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~ 187 (288)
T KOG0715|consen 117 GNPFDVFLEFFGGK---------MNKRVPDKDQYYDLSLDFKEAVRGSKKRISFNVLSDCETCFGSGAEEGAKRESCKTC 187 (288)
T ss_pred CCccchHHHhhccc---------ccccccCcccccccccCHHHHhhccccceEEEeecccccccCcCcccccccccchhh
Confidence 36788899888741 01112344667779999999999999999999999999999999777664 679999
Q ss_pred CCCcEEEEEEeeccceeeEEEEeCCCCccceEEEccCCCCCccCCCceeEEeEEEEEEeccCccCCcEEEEecCcCCCCC
Q 019908 168 QGTGMKITTRQIGLGMIQQMQHVCPECRGAGEVISERDKCPQCKANKVTQEKKVLEVHVEKGMQHGQKIAFEGQADEAPD 247 (334)
Q Consensus 168 ~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~~~~~~v~Ip~G~~~G~~i~l~g~G~~~~~ 247 (334)
.|.|.+.......+.+ .+|+.|.|.|.+.. +.|..|.|.+.+...+.+.|.+|+|+.++.+|++.+.|..
T Consensus 188 ~~~~~~~~~~~~~f~~-----~~~~~c~~~~~~~~--~~c~~~~g~~~v~~~k~i~i~~~~g~~~~~~l~~~~~~~~--- 257 (288)
T KOG0715|consen 188 SGRGLVSNPKEDPFIL-----YTCSYCLGRGLVLR--DNCQACSGAGQVRRAKDIMIVLPAGVRSADTLRFAGHGND--- 257 (288)
T ss_pred hCcccccccccCCcce-----eecccccccceecc--chHHHhhcchhhhhheeEEeecCcccccccEEEEecCCcc---
Confidence 9999665433322211 18999999999987 5599999999999999999999999999999999998864
Q ss_pred CCCcCEEEEEEEEeCCCceeecCcEEEEEecCHHH
Q 019908 248 TITGDIVFILQLKEHPKFKRKFDDLYVDHTLSLTE 282 (334)
Q Consensus 248 ~~~GDL~v~i~v~~~~~f~r~g~dL~~~~~I~l~~ 282 (334)
||+|++.|.+++.|+|+|.|++++..|++.+
T Consensus 258 ----~l~v~~~v~~~~~~~r~~~~i~~~~~i~~~~ 288 (288)
T KOG0715|consen 258 ----DLFVRLIVAKSPSFRREGKDILYDAIISFTQ 288 (288)
T ss_pred ----eEEEEEEeccCcccccccCcccccccccccC
Confidence 9999999999999999999999999998753
No 35
>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.
Probab=100.00 E-value=1.4e-36 Score=301.57 Aligned_cols=111 Identities=20% Similarity=0.189 Sum_probs=98.4
Q ss_pred eEEeEEEEEEeccCccCCcEEEEecCcCCCCCCCCcCEEEEEEEEeCCCceeecCcEEEEEecCHHHHhCCCeEEEecCC
Q 019908 216 TQEKKVLEVHVEKGMQHGQKIAFEGQADEAPDTITGDIVFILQLKEHPKFKRKFDDLYVDHTLSLTEALCGFQFALTHLD 295 (334)
Q Consensus 216 ~~~~~~~~v~Ip~G~~~G~~i~l~g~G~~~~~~~~GDL~v~i~v~~~~~f~r~g~dL~~~~~I~l~~al~G~~~~i~tld 295 (334)
+.+.+.++|+||+|+++|++|+|+|+|+..+++. |||+|+|++++|+.|+|+|+|||+++.|+|.+||+|+++.|+|||
T Consensus 693 vkE~ktLeVkIPpGVkdGqkIRf~GeGDegpgg~-GDLyVvIkVKPHp~FrRdGdDL~~~v~ISL~EALLGgtIeIpTLD 771 (871)
T TIGR03835 693 TNEAITLEIQLPITSQLNISAIFKGFGHDFGNGC-GDLKVVFKVIPSNFFQIKNDGLHVAALVDPLVAYNGGIIDVFGPN 771 (871)
T ss_pred eeeeEEEEEecCCCCCCCCEEEeccccCCCCCCC-CCEEEEEEEcCCCCeEEECCeEEEEEecCHHHHhcCCEEEeeCCC
Confidence 4556789999999999999999999999876664 999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEcCCCceecCCccc------CC---CCCccEEEEEEEE
Q 019908 296 GRQLLIKSNPGEIIKPGIYF------DN---FTSVNLYLHEYCF 330 (334)
Q Consensus 296 G~~l~v~i~~g~~i~~g~~~------~~---~~~GdL~v~~~V~ 330 (334)
|+ +.|+||++ +++|.++ +| +.+|||||+|+|.
T Consensus 772 Gr-VkLkIPpg--TqpGqvLRIkGKGMP~~~~~RGDLyV~f~V~ 812 (871)
T TIGR03835 772 KL-FNVRIPGG--IKVNDQVIFKDLGLTKTKYDKGSLIVHLYYS 812 (871)
T ss_pred CC-EEEeeCCC--CCCCcEEEECCCCCCCCCCCCCCEEEEEEEe
Confidence 97 88999876 4666543 22 3589999999985
No 36
>KOG0714 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=1.4e-20 Score=174.91 Aligned_cols=231 Identities=42% Similarity=0.702 Sum_probs=159.7
Q ss_pred ccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCh-----HHHHHHHHHHhhcCCCcccchhcccChhhhhcCCC-C
Q 019908 11 NTKYYEILGVSKSATEDELKKAYRKAAMKNHPDKGGDP-----EKFKELGQAYEVLSDPEKRDIYDQYGEDALKEGMG-G 84 (334)
Q Consensus 11 ~~~~y~iLgv~~~a~~~eik~ayr~la~~~hPd~~~~~-----~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~~~~~-~ 84 (334)
..|||++|+|.++|+.+||++|||++|++||||+|+.+ ++|+++++||++|+|+.+|..||+||++++.+... .
T Consensus 2 ~~d~~~~l~i~~~as~~~i~ka~~~~a~~~hpdk~~~~~~~~~~~~~~~~ea~~~ls~~~kr~~~d~~~~~~~~~~~~~~ 81 (306)
T KOG0714|consen 2 GKDYYKILGIARSASEEDIKKAYRKLALKYHPDKNPSPKEVAEAKFKEIAEAYEVLSDPKKRKIYDQYGEEGLKGGGSFS 81 (306)
T ss_pred cccHHHHhCccccccHHHHHHHHHHHHHhhCCCCCCCchhhHHHHHhhhhccccccCCHHHhhhccccCccccccCCCCC
Confidence 46899999999999999999999999999999998754 56999999999999999999999999866653111 1
Q ss_pred CC--------CCCCcchhhccccCCC-CCCCC-C------------------------CC-C---------CCccccccc
Q 019908 85 AG--------AAHNPFDIFESFFGGG-TFGAG-G------------------------SS-R---------GRRRKQGED 120 (334)
Q Consensus 85 ~~--------~~~~~~d~f~~~Fg~~-~~~~~-~------------------------~~-~---------~~~~~~~~d 120 (334)
.. ...+..++|.+|||.. .+... . .. . .........
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (306)
T KOG0714|consen 82 SSFTSELFYFLFRKPDKDFYEFFGVSSPFSGSKKGYRDKNAAPGEEAFKSEGKAFQSLYGPKRKQYDSSGSDRSARQSPP 161 (306)
T ss_pred CCCCCCcceeccCchhhhHHHHhCCCCCCccccccCCccccccCccccccccccccccCCCcccccccccccccccCCCC
Confidence 10 1112345666677621 11100 0 00 0 000000111
Q ss_pred EEEeeeeceeeeecCcccccccceeeeCCCCCCCCCccCCcccCCCCCCCcEEEEEEeeccceeeEEEEeCCCCccceEE
Q 019908 121 VVHTLKVSLEDLYNGTTKKLSLSRNILCPKCKGKGSKSGALGKCYGCQGTGMKITTRQIGLGMIQQMQHVCPECRGAGEV 200 (334)
Q Consensus 121 i~~~l~~sl~e~~~G~~~~i~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~ 200 (334)
+.+.+.+++++++.+..+...+.+... .....
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------------------------~~~~~------- 193 (306)
T KOG0714|consen 162 VEHPLRVSLEDLYKGESKKMKISRQSF-----------------------------------------TSNGR------- 193 (306)
T ss_pred ccCCcceeHHHhccccceeeecccccc-----------------------------------------cCCcc-------
Confidence 222222234444444433333222110 00000
Q ss_pred EccCCCCCccCCCceeEEeEEEEEEeccCccCCcEEEEecCcCCCCCCCCcCEEEEEEEEeCCCceeecCcEEEE--Eec
Q 019908 201 ISERDKCPQCKANKVTQEKKVLEVHVEKGMQHGQKIAFEGQADEAPDTITGDIVFILQLKEHPKFKRKFDDLYVD--HTL 278 (334)
Q Consensus 201 ~~~~~~C~~C~G~g~~~~~~~~~v~Ip~G~~~G~~i~l~g~G~~~~~~~~GDL~v~i~v~~~~~f~r~g~dL~~~--~~I 278 (334)
. .........+.+++++..|+.+....+|...++..+-++++.+..++|..|.+.+.+|... ..|
T Consensus 194 ---------~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~f~~~~~~~~~~~~~~~~l~~~~~~~~ 260 (306)
T KOG0714|consen 194 ---------E----GSSRSRYLSISIKPGWKEGTKITFPEEGDEEPGILPADIEFVVDEKPHPLFSRDGNDLSYSSGYEI 260 (306)
T ss_pred ---------c----ccCccceeEEeccCCcccccceeccccccccCCcCcceeEEEEecCCcccccCCCccceeccccee
Confidence 0 1234567899999999999999999999887776788899999999999999999999999 999
Q ss_pred CHHHHhCCCeEEEecCCCCeEEEE
Q 019908 279 SLTEALCGFQFALTHLDGRQLLIK 302 (334)
Q Consensus 279 ~l~~al~G~~~~i~tldG~~l~v~ 302 (334)
++.+|++|....++++++..+.+.
T Consensus 261 s~~~~~~~~~~~~~~~~~~~~~~~ 284 (306)
T KOG0714|consen 261 SLKEALLGVTVFVPTLDGRSYSLS 284 (306)
T ss_pred ehhhhhcCcceeeecccCccccCc
Confidence 999999999999999999865544
No 37
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=5.6e-21 Score=179.76 Aligned_cols=237 Identities=19% Similarity=0.345 Sum_probs=150.3
Q ss_pred CCCCCCCCccccccccCC--CCCCCH---------HHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHhhcCCCcccchhc
Q 019908 3 GRTPRRSNNTKYYEILGV--SKSATE---------DELKKAYRKAAMKNHPDKGGDPEKFKELGQAYEVLSDPEKRDIYD 71 (334)
Q Consensus 3 ~~~~~~~~~~~~y~iLgv--~~~a~~---------~eik~ayr~la~~~hPd~~~~~~~f~~i~~Ay~~L~d~~~r~~YD 71 (334)
+++++..+-+..|+-|-. .|+.++ +||++||--|+ +|. -..+|+.+..+...
T Consensus 13 ~k~As~~EIKkAYRkLA~kyHPD~n~g~~~AeeKFKEI~eAYEVLs---D~e----------KRa~YD~fG~~~~~---- 75 (371)
T COG0484 13 SKDASEEEIKKAYRKLAKKYHPDRNPGDKEAEEKFKEINEAYEVLS---DPE----------KRAAYDQFGHAGFK---- 75 (371)
T ss_pred CCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhC---CHH----------HHHHhhccCccccc----
Confidence 355555566677777654 233222 35777777776 333 34689988866554
Q ss_pred ccChhhhhcCCCCCC-CCCCc-chhhccccCCCCCCCCCCCCCCcccccccEEEeeeecee--------------eeecC
Q 019908 72 QYGEDALKEGMGGAG-AAHNP-FDIFESFFGGGTFGAGGSSRGRRRKQGEDVVHTLKVSLE--------------DLYNG 135 (334)
Q Consensus 72 ~~G~~~~~~~~~~~~-~~~~~-~d~f~~~Fg~~~~~~~~~~~~~~~~~~~di~~~l~~sl~--------------e~~~G 135 (334)
.-|..+. ++++.+ ++.|+ .++|..-.++ ....+ +..++.+...++.++|+..+. +.|.|
T Consensus 76 ~gg~gg~--g~~~fgg~~~DIF~~~FgGg~~~-~~~~~--~~~rG~Dl~~~l~isleEa~~G~~~~i~~~~~~~C~~C~G 150 (371)
T COG0484 76 AGGFGGF--GFGGFGGDFGDIFEDFFGGGGGG-RRRPN--RPRRGADLRYNLEITLEEAVFGVKKEIRVTRSVTCSTCHG 150 (371)
T ss_pred cCCcCCC--CcCCCCCCHHHHHHHhhcCCCcc-cCCCC--CcccCCceEEEEEeEhhhhccCceeeEecceeeECCcCCC
Confidence 1121121 233221 55554 4677433322 11111 234555556666666543322 67788
Q ss_pred cccccccceeeeCCCCCCCCCccCC--------cccCCCCCCCcEEEEEEeeccceeeEEEEeCCCCccceEEEccC---
Q 019908 136 TTKKLSLSRNILCPKCKGKGSKSGA--------LGKCYGCQGTGMKITTRQIGLGMIQQMQHVCPECRGAGEVISER--- 204 (334)
Q Consensus 136 ~~~~i~~~~~~~C~~C~G~G~~~~~--------~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~~--- 204 (334)
...+ .-+...+|++|+|+|..... +++|+.|+|+|+++. .+|+.|+|.|++...+
T Consensus 151 sGak-~gt~~~tC~tC~G~G~v~~~~~~g~~~~~~~C~~C~G~G~~i~-------------~pC~~C~G~G~v~~~~~i~ 216 (371)
T COG0484 151 SGAK-PGTDPKTCPTCNGSGQVRTVQRTGFFSFQQTCPTCNGTGKIIK-------------DPCGKCKGKGRVKKKKSIS 216 (371)
T ss_pred CCCC-CCCCCCcCCCCCCcCeEEEEEeeeEEEEEEECCCCccceeECC-------------CCCCCCCCCCeEeeeeEEE
Confidence 7666 33467899999999974322 267999999999875 8999999999855311
Q ss_pred --CCCCccCCCceeEEeE--------------------------------------------------------EEEEEe
Q 019908 205 --DKCPQCKANKVTQEKK--------------------------------------------------------VLEVHV 226 (334)
Q Consensus 205 --~~C~~C~G~g~~~~~~--------------------------------------------------------~~~v~I 226 (334)
-+--...|..+....+ .++|+|
T Consensus 217 V~IPaGv~~g~~ir~~g~G~~g~~Ggp~GDLyv~i~v~~h~~F~R~g~dL~~~~~Is~~~AalG~~i~vptl~g~~~l~i 296 (371)
T COG0484 217 VNIPAGVDDGDRIRLSGEGEAGPNGGPAGDLYVFVHVKPHPIFERDGDDLYCEVPISFTEAALGGEIEVPTLDGRVKLKI 296 (371)
T ss_pred EECCCCCccCCEEEEecCcccCCCCCCCccEEEEEEeecCCCeEECCCceEeccccCHHHHhcCCEEEEEecCCCEEEec
Confidence 1111222221111111 688999
Q ss_pred ccCccCCcEEEEecCcCCC-CCCCCcCEEEEEEEEeCCCceeecCcEEEE
Q 019908 227 EKGMQHGQKIAFEGQADEA-PDTITGDIVFILQLKEHPKFKRKFDDLYVD 275 (334)
Q Consensus 227 p~G~~~G~~i~l~g~G~~~-~~~~~GDL~v~i~v~~~~~f~r~g~dL~~~ 275 (334)
|||+++|++++|+|+|++. .+...|||||+|+|+.|+.+..+..+|+.+
T Consensus 297 p~Gtq~G~~~rl~gkG~p~~~~~~~GDl~v~v~v~~P~~ls~~q~~lL~~ 346 (371)
T COG0484 297 PAGTQTGEVFRLRGKGMPKLRSGGRGDLYVRVKVETPKNLSDEQKELLEE 346 (371)
T ss_pred CCCCccCcEEEEcCCCccccCCCCcCCEEEEEEEEcCCCCCHHHHHHHHH
Confidence 9999999999999999996 555679999999999999988888777665
No 38
>KOG0718 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=2.1e-20 Score=176.61 Aligned_cols=88 Identities=48% Similarity=0.779 Sum_probs=75.9
Q ss_pred CCCCccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCh-------HHHHHHHHHHhhcCCCcccchhcccChhhhh
Q 019908 7 RRSNNTKYYEILGVSKSATEDELKKAYRKAAMKNHPDKGGDP-------EKFKELGQAYEVLSDPEKRDIYDQYGEDALK 79 (334)
Q Consensus 7 ~~~~~~~~y~iLgv~~~a~~~eik~ayr~la~~~hPd~~~~~-------~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~ 79 (334)
...++.+||.+|+|+++|+.+|||+|||++++.|||||..|+ ++|+.|.+||||||||.+|++||.||+.|++
T Consensus 4 ~e~~e~e~Ya~LNlpkdAt~eeI~~AYrr~~~lfHPDkh~dpd~K~~AE~~F~~i~~AyEVLsDp~kRaIYD~~G~qGL~ 83 (546)
T KOG0718|consen 4 AELDEIELYALLNLPKDATDEEIKKAYRRLSRLFHPDKHTDPDQKKAAEEKFQRIQRAYEVLSDPQKRAIYDNYGEQGLK 83 (546)
T ss_pred cccchhhHHHHhCCCcccCHHHHHHHHHHHHHhcCCcccCChhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhhcccc
Confidence 366788999999999999999999999999999999998765 6899999999999999999999999999998
Q ss_pred -cCCCCCCCCCCcchh
Q 019908 80 -EGMGGAGAAHNPFDI 94 (334)
Q Consensus 80 -~~~~~~~~~~~~~d~ 94 (334)
+||.-+.....+.+|
T Consensus 84 t~gwEl~~r~~tpeEI 99 (546)
T KOG0718|consen 84 TEGWELGFRGKTPEEI 99 (546)
T ss_pred ccCceeecCCCCHHHH
Confidence 666433333344444
No 39
>KOG0716 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=2.2e-19 Score=160.00 Aligned_cols=70 Identities=60% Similarity=1.046 Sum_probs=65.6
Q ss_pred CccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-h---HHHHHHHHHHhhcCCCcccchhcccChhhhh
Q 019908 10 NNTKYYEILGVSKSATEDELKKAYRKAAMKNHPDKGGD-P---EKFKELGQAYEVLSDPEKRDIYDQYGEDALK 79 (334)
Q Consensus 10 ~~~~~y~iLgv~~~a~~~eik~ayr~la~~~hPd~~~~-~---~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~ 79 (334)
...++|++||++++|+.++||+|||+||++||||++++ | ++|++||+||++|+|+.+|..||.||+.++.
T Consensus 29 ~~~~LYdVLgl~k~at~d~IKKaYR~L~~k~HPD~~gd~P~~~dkf~eIN~Ay~ILsD~~kR~~YD~~g~~~l~ 102 (279)
T KOG0716|consen 29 IRLDLYDVLGLPKTATKDEIKKAYRKLALKYHPDKNGDNPEATDKFKEINTAYAILSDPTKRNVYDEYGELGLK 102 (279)
T ss_pred chhHHHHHhCCCcccchHHHHHHHHHHHHHhCCCcCCCCchhHHHHHHHHHHHHHhcChhhhhhHHHhhhHHHH
Confidence 35789999999999999999999999999999999987 3 8999999999999999999999999988764
No 40
>PTZ00341 Ring-infected erythrocyte surface antigen; Provisional
Probab=99.77 E-value=2.4e-19 Score=182.99 Aligned_cols=73 Identities=34% Similarity=0.632 Sum_probs=67.6
Q ss_pred CCCccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCh---HHHHHHHHHHhhcCCCcccchhcccChhhhhc
Q 019908 8 RSNNTKYYEILGVSKSATEDELKKAYRKAAMKNHPDKGGDP---EKFKELGQAYEVLSDPEKRDIYDQYGEDALKE 80 (334)
Q Consensus 8 ~~~~~~~y~iLgv~~~a~~~eik~ayr~la~~~hPd~~~~~---~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~~ 80 (334)
+...++||++|||+++|+..|||+|||+||++||||+++++ ++|++|++||+|||||.+|+.||+||..++..
T Consensus 569 ~~~d~dYYdILGVs~dAS~~EIKKAYRKLAlkyHPDKN~~~~A~ekFq~I~EAYeVLSDp~kRk~YD~~G~~Gl~~ 644 (1136)
T PTZ00341 569 EIPDTLFYDILGVGVNADMKEISERYFKLAENYYPPKRSGNEGFHKFKKINEAYQILGDIDKKKMYNKFGYDGIKG 644 (1136)
T ss_pred cCCCCChHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHhhccccccCC
Confidence 45678999999999999999999999999999999999854 79999999999999999999999999887653
No 41
>PHA03102 Small T antigen; Reviewed
Probab=99.75 E-value=5.3e-19 Score=147.89 Aligned_cols=86 Identities=31% Similarity=0.470 Sum_probs=74.6
Q ss_pred CccccccccCCCCCC--CHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHhhcCCCcccchhcccChhhhhcCCCCCCC
Q 019908 10 NNTKYYEILGVSKSA--TEDELKKAYRKAAMKNHPDKGGDPEKFKELGQAYEVLSDPEKRDIYDQYGEDALKEGMGGAGA 87 (334)
Q Consensus 10 ~~~~~y~iLgv~~~a--~~~eik~ayr~la~~~hPd~~~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~~~~~~~~~ 87 (334)
+.+.+|++|||+++| |.+|||+|||++|+++|||+++++++|++|++||++|+|+.+|..||.+|.......
T Consensus 3 e~~~l~~vLGl~~~A~~s~~eIKkAYr~la~~~HPDkgg~~e~~k~in~Ay~~L~d~~~r~~yd~~g~~~~~~~------ 76 (153)
T PHA03102 3 ESKELMDLLGLPRSAWGNLPLMRKAYLRKCLEFHPDKGGDEEKMKELNTLYKKFRESVKSLRDLDGEEDSSSEE------ 76 (153)
T ss_pred hHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCchhHHHHHHHHHHHHHhhHHHhccccccCCcccccc------
Confidence 456799999999999 999999999999999999999999999999999999999999999999997654321
Q ss_pred CCCcchhhccccCC
Q 019908 88 AHNPFDIFESFFGG 101 (334)
Q Consensus 88 ~~~~~d~f~~~Fg~ 101 (334)
...+.++|..+||+
T Consensus 77 ~~~~~~~f~~~fg~ 90 (153)
T PHA03102 77 EDVPSGYVGATFGD 90 (153)
T ss_pred cccHHHHhhhhcCC
Confidence 12267778888864
No 42
>PRK10767 chaperone protein DnaJ; Provisional
Probab=99.75 E-value=7.2e-18 Score=162.53 Aligned_cols=131 Identities=20% Similarity=0.413 Sum_probs=92.5
Q ss_pred eecCcccccccceeeeCCCCCCCCCccC------CcccCCCCCCCcEEEEEEeeccceeeEEEEeCCCCccceEEEccCC
Q 019908 132 LYNGTTKKLSLSRNILCPKCKGKGSKSG------ALGKCYGCQGTGMKITTRQIGLGMIQQMQHVCPECRGAGEVISERD 205 (334)
Q Consensus 132 ~~~G~~~~i~~~~~~~C~~C~G~G~~~~------~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~~~ 205 (334)
.|.|....-. .....|+.|+|+|.... ...+|+.|+|+|+.+. .+|+.|+|.|.+.....
T Consensus 147 ~C~G~G~~~~-~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~-------------~~C~~C~G~g~v~~~~~ 212 (371)
T PRK10767 147 TCHGSGAKPG-TSPKTCPTCHGAGQVRMQQGFFTVQQTCPTCHGRGKIIK-------------DPCKKCHGQGRVEKEKT 212 (371)
T ss_pred CCCCcccCCC-CCCccCCCCCCeeEEEEeeceEEEEEeCCCCCCceeECC-------------CCCCCCCCCceEeeeee
Confidence 4566555422 23468999999996531 2357999999998764 78999999987542100
Q ss_pred ----------------------CCC--ccCCCceeEEeE-------------------------------------EEEE
Q 019908 206 ----------------------KCP--QCKANKVTQEKK-------------------------------------VLEV 224 (334)
Q Consensus 206 ----------------------~C~--~C~G~g~~~~~~-------------------------------------~~~v 224 (334)
... .=.|.-++.-.. .++|
T Consensus 213 l~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~~ldG~i~v 292 (371)
T PRK10767 213 LSVKIPAGVDTGDRIRLSGEGEAGERGGPAGDLYVQIHVKEHPIFERDGNDLYCEVPISFTTAALGGEIEVPTLDGRVKL 292 (371)
T ss_pred EEEecCCCCCCCcEEEEecCccCCCCCCCCcCEEEEEEEeeCCCEEEecCCEEEEEEeCHHHHhCCCeEEEecCCCcEEE
Confidence 000 000111111100 5789
Q ss_pred EeccCccCCcEEEEecCcCCCC-CCCCcCEEEEEEEEeCCCceeecCcEEEEE
Q 019908 225 HVEKGMQHGQKIAFEGQADEAP-DTITGDIVFILQLKEHPKFKRKFDDLYVDH 276 (334)
Q Consensus 225 ~Ip~G~~~G~~i~l~g~G~~~~-~~~~GDL~v~i~v~~~~~f~r~g~dL~~~~ 276 (334)
+||+|+++|++++|+|+|++.+ ++..|||||+|+|..|+.|++++.+|+.++
T Consensus 293 ~ip~g~~~g~~~~i~g~G~p~~~~~~~GDL~v~~~v~~P~~l~~~~~~ll~~l 345 (371)
T PRK10767 293 KIPEGTQTGKLFRLRGKGVKSVRSGARGDLYCQVVVETPVNLTKRQKELLEEF 345 (371)
T ss_pred EeCCCCCCCCEEEECCCCcCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHH
Confidence 9999999999999999999864 346799999999999999999999887763
No 43
>KOG0691 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=5.4e-19 Score=162.60 Aligned_cols=88 Identities=45% Similarity=0.750 Sum_probs=75.3
Q ss_pred CccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCh----HHHHHHHHHHhhcCCCcccchhcccChhhhhcCCCCC
Q 019908 10 NNTKYYEILGVSKSATEDELKKAYRKAAMKNHPDKGGDP----EKFKELGQAYEVLSDPEKRDIYDQYGEDALKEGMGGA 85 (334)
Q Consensus 10 ~~~~~y~iLgv~~~a~~~eik~ayr~la~~~hPd~~~~~----~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~~~~~~~ 85 (334)
...|||++|||+++|+.+||++|||+.|++||||+||++ ++|+++.+||+||+|+..|+.||.++..+....
T Consensus 3 ~~~dyY~lLgi~~~at~~eIkKaYr~kaL~~HPDKNp~dP~A~ekFq~L~eAy~VL~D~~~R~~YDk~~k~~~~~~---- 78 (296)
T KOG0691|consen 3 KDTDYYDLLGISEDATDAEIKKAYRKKALQYHPDKNPGDPQAAEKFQELSEAYEVLSDEESRAAYDKLRKSGSSAQ---- 78 (296)
T ss_pred ccchHHHHhCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcccch----
Confidence 478999999999999999999999999999999999964 899999999999999999999999997654321
Q ss_pred CCCCCcchhhccccCCC
Q 019908 86 GAAHNPFDIFESFFGGG 102 (334)
Q Consensus 86 ~~~~~~~d~f~~~Fg~~ 102 (334)
...+..++|...|++.
T Consensus 79 -~~~d~~~~~r~~f~~d 94 (296)
T KOG0691|consen 79 -GREDQADGFRKKFGSD 94 (296)
T ss_pred -hhhhHHHHHHHHhhhh
Confidence 2345567777777643
No 44
>PRK14288 chaperone protein DnaJ; Provisional
Probab=99.73 E-value=9.6e-18 Score=161.30 Aligned_cols=130 Identities=20% Similarity=0.430 Sum_probs=90.6
Q ss_pred eeecCcccccccceeeeCCCCCCCCCccC------CcccCCCCCCCcEEEEEEeeccceeeEEEEeCCCCccceEEEccC
Q 019908 131 DLYNGTTKKLSLSRNILCPKCKGKGSKSG------ALGKCYGCQGTGMKITTRQIGLGMIQQMQHVCPECRGAGEVISER 204 (334)
Q Consensus 131 e~~~G~~~~i~~~~~~~C~~C~G~G~~~~------~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~~ 204 (334)
+.|.|....-. ....|+.|+|+|.... ...+|+.|+|+|+++. .+|+.|+|.|.+...+
T Consensus 144 ~~C~G~G~~~~--~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~-------------~~C~~C~G~g~v~~~~ 208 (369)
T PRK14288 144 ESCDGTGAKDK--ALETCKQCNGQGQVFMRQGFMSFAQTCGACQGKGKIIK-------------TPCQACKGKTYILKDE 208 (369)
T ss_pred CCCCCcccCCC--CCcCCCCCCCCcEEEEEeceEEEEEecCCCCCCceEcc-------------ccCccCCCcceEEEEE
Confidence 34567665432 4568999999996532 1257999999998765 7899999998754200
Q ss_pred C----------------------CCCcc-CCCceeEEeE--------------------------------------EEE
Q 019908 205 D----------------------KCPQC-KANKVTQEKK--------------------------------------VLE 223 (334)
Q Consensus 205 ~----------------------~C~~C-~G~g~~~~~~--------------------------------------~~~ 223 (334)
. .-+.- .|.-++.-.. .++
T Consensus 209 ~l~V~IP~G~~~G~~i~l~g~G~~~~~~~~GDL~v~i~v~~h~~f~R~G~DL~~~~~Isl~eAllG~~i~v~tLdG~~l~ 288 (369)
T PRK14288 209 EIDAIIPEGIDDQNRMVLKNKGNEYEKGKRGDLYLEARVKEDEHFKREGCDLFIEAPVFFTTIALGHTIKVPSLKGDELE 288 (369)
T ss_pred EEEEecCCCCCCCCEEEEccCccCCCCCCCCCEEEEEEEEECCCcEEeCCEEEEEEecCHHHHhcCCEEEeecCCCCEEE
Confidence 0 00000 0111111100 589
Q ss_pred EEeccCccCCcEEEEecCcCCCCCC-CCcCEEEEEEEEeCCCceeecCcEEEE
Q 019908 224 VHVEKGMQHGQKIAFEGQADEAPDT-ITGDIVFILQLKEHPKFKRKFDDLYVD 275 (334)
Q Consensus 224 v~Ip~G~~~G~~i~l~g~G~~~~~~-~~GDL~v~i~v~~~~~f~r~g~dL~~~ 275 (334)
|+||+|+++|++++|+|+|++.++. ..|||||+|+|+.|+.|+.+...|+.+
T Consensus 289 i~i~~~~~~g~~~~i~g~G~p~~~~~~~GDL~v~~~v~~P~~ls~~q~~~l~~ 341 (369)
T PRK14288 289 LKIPRNARDRQTFAFRNEGVKHPESSYRGSLIVELQVIYPKSLNKEQQELLEK 341 (369)
T ss_pred EEeCCCCCCCcEEEEcCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHH
Confidence 9999999999999999999997654 469999999999999888777655444
No 45
>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.71 E-value=3.9e-18 Score=161.38 Aligned_cols=71 Identities=48% Similarity=0.797 Sum_probs=64.6
Q ss_pred CCCccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCh-----HHHHHHHHHHhhcCCCcccchhcccChhhh
Q 019908 8 RSNNTKYYEILGVSKSATEDELKKAYRKAAMKNHPDKGGDP-----EKFKELGQAYEVLSDPEKRDIYDQYGEDAL 78 (334)
Q Consensus 8 ~~~~~~~y~iLgv~~~a~~~eik~ayr~la~~~hPd~~~~~-----~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~ 78 (334)
+...+.||++|||.++|++.|||++||+|||+||||+||+. ++|+.|+.||+|||||..|+.||..-+.-+
T Consensus 4 ~~~~~c~YE~L~v~~~a~d~eik~~YRklALq~HPDknpd~ieeat~~F~~i~aAYeVLSdp~eR~wyd~hreqil 79 (508)
T KOG0717|consen 4 PFKKRCYYEVLGVERDADDDEIKKNYRKLALQYHPDKNPDRIEEATQQFQLIQAAYEVLSDPQERAWYDSHREQIL 79 (508)
T ss_pred chhhhHHHHHhcccccCCHHHHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHHHHHhcChHhhhhHHHHHHHHh
Confidence 34678999999999999999999999999999999999975 799999999999999999999998655433
No 46
>PRK14279 chaperone protein DnaJ; Provisional
Probab=99.71 E-value=2e-17 Score=160.26 Aligned_cols=131 Identities=21% Similarity=0.411 Sum_probs=92.2
Q ss_pred eeecCcccccccceeeeCCCCCCCCCccC------CcccCCCCCCCcEEEEEEeeccceeeEEEEeCCCCccceEEEccC
Q 019908 131 DLYNGTTKKLSLSRNILCPKCKGKGSKSG------ALGKCYGCQGTGMKITTRQIGLGMIQQMQHVCPECRGAGEVISER 204 (334)
Q Consensus 131 e~~~G~~~~i~~~~~~~C~~C~G~G~~~~------~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~~ 204 (334)
+.|.|....-. .....|+.|+|+|.+.. ...+|+.|+|+|+++. .+|+.|+|.|.+...+
T Consensus 177 ~~C~G~G~~~~-~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~i~-------------~~C~~C~G~g~v~~~~ 242 (392)
T PRK14279 177 TTCHGSGARPG-TSPKVCPTCNGSGVISRNQGAFGFSEPCTDCRGTGSIIE-------------DPCEECKGTGVTTRTR 242 (392)
T ss_pred CCCccccccCC-CCCCCCCCCcceEEEEEEecceEEEEecCCCCceeEEeC-------------CcCCCCCCCeEEEEee
Confidence 34667666532 34578999999997542 2367999999999765 7899999998764310
Q ss_pred C----------------------CCCcc--CCCceeEEe-------------------------------------EEEE
Q 019908 205 D----------------------KCPQC--KANKVTQEK-------------------------------------KVLE 223 (334)
Q Consensus 205 ~----------------------~C~~C--~G~g~~~~~-------------------------------------~~~~ 223 (334)
. .-+.. .|.-++.-. ..++
T Consensus 243 ~~~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDL~i~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~v~~ldg~i~ 322 (392)
T PRK14279 243 TINVRIPPGVEDGQRIRLAGQGEAGLRGAPSGDLYVTVHVRPDKVFGRDGDDLTVTVPVSFTELALGSTLSVPTLDGPVG 322 (392)
T ss_pred eeEEEeCCCCCCCcEEEEeCCccCCCCCCCCCCEEEEEEEecCCcceeecCcEEEEEEccHHHHcCCceEEEEcCCceEE
Confidence 0 00000 111111100 0578
Q ss_pred EEeccCccCCcEEEEecCcCCCCCCCCcCEEEEEEEEeCCCceeecCcEEEE
Q 019908 224 VHVEKGMQHGQKIAFEGQADEAPDTITGDIVFILQLKEHPKFKRKFDDLYVD 275 (334)
Q Consensus 224 v~Ip~G~~~G~~i~l~g~G~~~~~~~~GDL~v~i~v~~~~~f~r~g~dL~~~ 275 (334)
|+||+|+++|++|+|+|+|++..++..|||||+|+|..|+.+..+...|+.+
T Consensus 323 v~Ip~g~~~g~~iri~g~G~p~~~~~~GDL~I~~~v~~P~~Ls~~q~~~l~~ 374 (392)
T PRK14279 323 VKVPAGTADGRILRVRGRGVPKRSGGAGDLLVTVKVAVPPNLDGAAAEALEA 374 (392)
T ss_pred EEECCCCCCCCEEEECCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHH
Confidence 9999999999999999999997666789999999999988777666555544
No 47
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.70 E-value=1.2e-17 Score=153.60 Aligned_cols=70 Identities=53% Similarity=0.825 Sum_probs=64.8
Q ss_pred CCccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCh-------HHHHHHHHHHhhcCCCcccchhcccChhhhh
Q 019908 9 SNNTKYYEILGVSKSATEDELKKAYRKAAMKNHPDKGGDP-------EKFKELGQAYEVLSDPEKRDIYDQYGEDALK 79 (334)
Q Consensus 9 ~~~~~~y~iLgv~~~a~~~eik~ayr~la~~~hPd~~~~~-------~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~ 79 (334)
+..+|||+||||.++|+..||.+|||++|.+||||...|. .+|-.|..|-|||+||++|+.||. |++.++
T Consensus 391 s~kRDYYKILGVkRnAsKqEI~KAYRKlAqkWHPDNFqdEeEKKkAEKKFIDIAAAKEVLsd~EkRrqFDn-GeDPLD 467 (504)
T KOG0624|consen 391 SGKRDYYKILGVKRNASKQEITKAYRKLAQKWHPDNFQDEEEKKKAEKKFIDIAAAKEVLSDPEKRRQFDN-GEDPLD 467 (504)
T ss_pred hccchHHHHhhhcccccHHHHHHHHHHHHHhcCCccccCHHHHHHHHHhhhhHHHHHHhhcCHHHHhhccC-CCCCCC
Confidence 5789999999999999999999999999999999987775 589999999999999999999998 777765
No 48
>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=99.70 E-value=7.7e-17 Score=143.26 Aligned_cols=67 Identities=57% Similarity=0.921 Sum_probs=62.2
Q ss_pred CCCccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCh-----HHHHHHHHHHhhcCCCcccchhcccC
Q 019908 8 RSNNTKYYEILGVSKSATEDELKKAYRKAAMKNHPDKGGDP-----EKFKELGQAYEVLSDPEKRDIYDQYG 74 (334)
Q Consensus 8 ~~~~~~~y~iLgv~~~a~~~eik~ayr~la~~~hPd~~~~~-----~~f~~i~~Ay~~L~d~~~r~~YD~~G 74 (334)
+....+||+||||+++|+..||++|||++|++||||+++.. ++|++|++||++|+|+.+|+.||+++
T Consensus 2 ~~~~~~~y~iLgv~~~as~~eik~ayrkla~~~HPD~~~~~~~~a~~~f~~i~~Ay~vLsd~~~r~~yd~~~ 73 (237)
T COG2214 2 MSDLLDYYEILGVPPNASLEEIKKAYRKLALKYHPDRNPGDPKVAEEKFKEINEAYEILSDPERRAEYDKIG 73 (237)
T ss_pred chhhhhHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhhCHHHHHHhhhhc
Confidence 34678999999999999999999999999999999999842 89999999999999999999999973
No 49
>PRK14300 chaperone protein DnaJ; Provisional
Probab=99.70 E-value=7.9e-17 Score=155.19 Aligned_cols=172 Identities=20% Similarity=0.372 Sum_probs=109.2
Q ss_pred CcchhhccccCCCCCCCCCCCCCCcccccccEEEeeeec---------e--e---eeecCcccccccceeeeCCCCCCCC
Q 019908 90 NPFDIFESFFGGGTFGAGGSSRGRRRKQGEDVVHTLKVS---------L--E---DLYNGTTKKLSLSRNILCPKCKGKG 155 (334)
Q Consensus 90 ~~~d~f~~~Fg~~~~~~~~~~~~~~~~~~~di~~~l~~s---------l--~---e~~~G~~~~i~~~~~~~C~~C~G~G 155 (334)
.|.++|++||++++.........++.+....+.++|+.. + . ..|.|.... .-.....|+.|+|+|
T Consensus 94 ~f~~~f~~~~gg~~~~~~~~~~~~g~di~~~l~~sLee~~~G~~k~i~~~r~~~C~~C~G~g~~-~~~~~~~C~~C~G~G 172 (372)
T PRK14300 94 IFGDFFSDFMGGSRRSRPTSSKVRGSDLKYNLTINLEEAFHGIEKNISFSSEVKCDTCHGSGSE-KGETVTTCDACSGVG 172 (372)
T ss_pred hHHHHHHhhcCCCCCCCCCcCCCCCCCeeEEEEEEHHHHhCCceEEEEeeeccccCCCCCcccC-CCCCCccCCCccCeE
Confidence 355788888875321111111123344445555544322 2 2 345666554 223346899999999
Q ss_pred CccC------CcccCCCCCCCcEEEEEEeeccceeeEEEEeCCCCccceEEEccCC-CCCcc------------------
Q 019908 156 SKSG------ALGKCYGCQGTGMKITTRQIGLGMIQQMQHVCPECRGAGEVISERD-KCPQC------------------ 210 (334)
Q Consensus 156 ~~~~------~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~~~-~C~~C------------------ 210 (334)
.... ...+|+.|+|+|+++. .+|+.|+|.|++..... ....-
T Consensus 173 ~~~~~~g~~~~~~~C~~C~G~G~~~~-------------~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~l~g~G~~~ 239 (372)
T PRK14300 173 ATRMQQGFFTIEQACHKCQGNGQIIK-------------NPCKKCHGMGRYHKQRNLSVNIPAGVENGTRIRHTGEGEAG 239 (372)
T ss_pred EEEEeeceEEEEEeCCCCCccceEeC-------------CCCCCCCCceEEEeeEEEEEEECCCCCCCcEEEEeccccCC
Confidence 7532 2357999999998765 78999999988642100 00000
Q ss_pred -----CCCceeE-----------------------------------Ee---EEEEEEeccCccCCcEEEEecCcCCCCC
Q 019908 211 -----KANKVTQ-----------------------------------EK---KVLEVHVEKGMQHGQKIAFEGQADEAPD 247 (334)
Q Consensus 211 -----~G~g~~~-----------------------------------~~---~~~~v~Ip~G~~~G~~i~l~g~G~~~~~ 247 (334)
.|.-++. .. ..++|+||+|+++|++|+|+|+|++.++
T Consensus 240 ~~~~~~GDL~v~i~v~~h~~f~R~G~Dl~~~~~Isl~~Al~G~~~~i~~ldg~~i~v~Ip~g~~~g~~iri~g~G~p~~~ 319 (372)
T PRK14300 240 IRGGNSGDLYVDIAIKPHDIYKVDGANLHCKLPISFVNAALGGEIEVPVIEGGKVNLTIPAGTQNGDQLRLRSKGMSKMR 319 (372)
T ss_pred CCCCCCCCEEEEEEECCCCCeEEecCCEEEEEecCHHHHhCCCEEEEecCCCCEEEEEECCccCCCcEEEECCCCCCCCC
Confidence 0111110 00 1689999999999999999999998653
Q ss_pred -CCCcCEEEEEEEEeCCCceeecCcEEEE
Q 019908 248 -TITGDIVFILQLKEHPKFKRKFDDLYVD 275 (334)
Q Consensus 248 -~~~GDL~v~i~v~~~~~f~r~g~dL~~~ 275 (334)
..+|||||+|+|..|+.|+.++..|+.+
T Consensus 320 ~~~~GDL~V~~~v~~P~~ls~~qk~~l~~ 348 (372)
T PRK14300 320 STIRGDMLTHIHVEVPKNLSKRQRELLEE 348 (372)
T ss_pred CCCCCCEEEEEEEECCCCCCHHHHHHHHH
Confidence 4689999999999998887776665544
No 50
>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A ....
Probab=99.69 E-value=1.2e-17 Score=120.49 Aligned_cols=59 Identities=51% Similarity=0.908 Sum_probs=55.9
Q ss_pred ccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-h----HHHHHHHHHHhhcCCCcccchhc
Q 019908 13 KYYEILGVSKSATEDELKKAYRKAAMKNHPDKGGD-P----EKFKELGQAYEVLSDPEKRDIYD 71 (334)
Q Consensus 13 ~~y~iLgv~~~a~~~eik~ayr~la~~~hPd~~~~-~----~~f~~i~~Ay~~L~d~~~r~~YD 71 (334)
|||+||||+++|+.++||+||+++++++|||+++. . +.|+.|++||++|+||.+|+.||
T Consensus 1 ~~y~iLgl~~~~~~~eik~~y~~l~~~~HPD~~~~~~~~~~~~~~~i~~Ay~~L~~~~~R~~YD 64 (64)
T PF00226_consen 1 NPYEILGLPPDASDEEIKKAYRRLSKQYHPDKNSGDEAEAEEKFARINEAYEILSDPERRRRYD 64 (64)
T ss_dssp HHHHHCTSTTTSSHHHHHHHHHHHHHHTSTTTGTSTHHHHHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred ChHHHCCCCCCCCHHHHHHHHHhhhhccccccchhhhhhhhHHHHHHHHHHHHhCCHHHHHhcC
Confidence 68999999999999999999999999999999764 3 69999999999999999999998
No 51
>KOG0719 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=5e-17 Score=141.59 Aligned_cols=66 Identities=50% Similarity=0.899 Sum_probs=61.5
Q ss_pred CccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCh------HHHHHHHHHHhhcCCCcccchhcccCh
Q 019908 10 NNTKYYEILGVSKSATEDELKKAYRKAAMKNHPDKGGDP------EKFKELGQAYEVLSDPEKRDIYDQYGE 75 (334)
Q Consensus 10 ~~~~~y~iLgv~~~a~~~eik~ayr~la~~~hPd~~~~~------~~f~~i~~Ay~~L~d~~~r~~YD~~G~ 75 (334)
..+|+|+||||.++|+..||++||++||++||||+++.. ++|++|+.||.||+|.++|+.||+.|.
T Consensus 12 ~~~d~YevLGVer~a~~~eIrkAY~klal~~HPDk~~eed~~ea~~kFq~l~k~y~iLsDeekR~~YDetG~ 83 (264)
T KOG0719|consen 12 NKKDLYEVLGVERDATDKEIRKAYHKLALRLHPDKNHEEDKVEATEKFQQLQKAYQILSDEEKRAVYDETGS 83 (264)
T ss_pred cccCHHHHhhhcccCCHHHHHHHHHHHHHHhCCCcchhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHhccCC
Confidence 455999999999999999999999999999999999743 799999999999999999999999884
No 52
>PRK14286 chaperone protein DnaJ; Provisional
Probab=99.63 E-value=1.6e-15 Score=146.16 Aligned_cols=131 Identities=22% Similarity=0.401 Sum_probs=91.9
Q ss_pred eeecCcccccccceeeeCCCCCCCCCccC------CcccCCCCCCCcEEEEEEeeccceeeEEEEeCCCCccceEEEccC
Q 019908 131 DLYNGTTKKLSLSRNILCPKCKGKGSKSG------ALGKCYGCQGTGMKITTRQIGLGMIQQMQHVCPECRGAGEVISER 204 (334)
Q Consensus 131 e~~~G~~~~i~~~~~~~C~~C~G~G~~~~------~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~~ 204 (334)
+.|.|....-. .....|+.|+|+|.... ...+|+.|+|+|+++. .+|+.|+|.|.+...+
T Consensus 154 ~~C~G~G~~~~-~~~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~~-------------~~C~~C~G~g~~~~~~ 219 (372)
T PRK14286 154 VDCNGSGASKG-SSPTTCPDCGGSGQIRRTQGFFSVATTCPTCRGKGTVIS-------------NPCKTCGGQGLQEKRR 219 (372)
T ss_pred CCCcCCCcCCC-CCCccCCCCcCeEEEEEEeceEEEEEeCCCCCceeeEec-------------ccCCCCCCCcEEecce
Confidence 34567665422 33468999999996532 2357999999998765 7899999998865311
Q ss_pred ----------------------CCCCc--cCCCceeEEeE--------------------------------------EE
Q 019908 205 ----------------------DKCPQ--CKANKVTQEKK--------------------------------------VL 222 (334)
Q Consensus 205 ----------------------~~C~~--C~G~g~~~~~~--------------------------------------~~ 222 (334)
.+.+. -.|.-++.-.. .+
T Consensus 220 ~l~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDL~i~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldG~~i 299 (372)
T PRK14286 220 TINIKIPPGVETGSRLKVSGEGEAGPNGGPHGDLYVVTHIKKHELFERQGNDLILVRKISLAQAILGAEIEVPTIDGKKA 299 (372)
T ss_pred EEEEEECCCCCCCCEEEECCccccCCCCCCCceEEEEEEEccCCCEEEecCCEEEEEEECHHHHhCCCEEEEeCCCCCEE
Confidence 01111 11221111111 58
Q ss_pred EEEeccCccCCcEEEEecCcCCCCC-CCCcCEEEEEEEEeCCCceeecCcEEEE
Q 019908 223 EVHVEKGMQHGQKIAFEGQADEAPD-TITGDIVFILQLKEHPKFKRKFDDLYVD 275 (334)
Q Consensus 223 ~v~Ip~G~~~G~~i~l~g~G~~~~~-~~~GDL~v~i~v~~~~~f~r~g~dL~~~ 275 (334)
+|+||+|+++|++++|+|+|++..+ ...|||||+|+|..|+.++.++.+|+.+
T Consensus 300 ~v~ip~g~~~g~~~ri~G~G~P~~~~~~~GDL~V~~~V~~P~~Ls~~qk~~l~~ 353 (372)
T PRK14286 300 KMKIPEGTESGQVFRLKGHGMPYLGAYGKGDQHVIVKIEIPKKITRRQRELIEE 353 (372)
T ss_pred EEEeCCccCCCcEEEECCCCCCCCCCCCCCcEEEEEEEECCCCCCHHHHHHHHH
Confidence 9999999999999999999998643 4579999999999998877777666544
No 53
>PRK14285 chaperone protein DnaJ; Provisional
Probab=99.63 E-value=1.9e-15 Score=145.30 Aligned_cols=131 Identities=17% Similarity=0.372 Sum_probs=93.0
Q ss_pred eeecCcccccccceeeeCCCCCCCCCccC------CcccCCCCCCCcEEEEEEeeccceeeEEEEeCCCCccceEEEccC
Q 019908 131 DLYNGTTKKLSLSRNILCPKCKGKGSKSG------ALGKCYGCQGTGMKITTRQIGLGMIQQMQHVCPECRGAGEVISER 204 (334)
Q Consensus 131 e~~~G~~~~i~~~~~~~C~~C~G~G~~~~------~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~~ 204 (334)
+.|.|.... .-.....|+.|+|+|.... .+.+|+.|+|+|+++. .+|+.|+|.|.+...+
T Consensus 150 ~~C~G~G~~-~~~~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~~~-------------~~C~~C~G~g~v~~~~ 215 (365)
T PRK14285 150 ESCLGKKSE-KGTSPSICNMCNGSGRVMQGGGFFRVTTTCPKCYGNGKIIS-------------NPCKSCKGKGSLKKKE 215 (365)
T ss_pred CCCCCcccC-CCCCCccCCCccCceeEEecCceeEEeeecCCCCCcccccC-------------CCCCCCCCCCEEeccE
Confidence 346676654 2233467999999996532 2367999999998765 7899999999754310
Q ss_pred C-----CCCccC-------------------CCceeEEeE--------------------------------------EE
Q 019908 205 D-----KCPQCK-------------------ANKVTQEKK--------------------------------------VL 222 (334)
Q Consensus 205 ~-----~C~~C~-------------------G~g~~~~~~--------------------------------------~~ 222 (334)
. +=-.-. |.-++.-.. .+
T Consensus 216 ~~~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDL~v~i~v~~h~~f~R~G~dL~~~~~Isl~eAl~G~~~~i~tldG~~v 295 (365)
T PRK14285 216 TIELKIPAGIDDNQQIKMRGKGSVNPDNQQYGDLYIKILIKPHKIFKRNGKDLYATLPISFTQAALGKEIKIQTIASKKI 295 (365)
T ss_pred EEEEEECCCCCCCCEEEEeeccccCCCCCCCCCEEEEEEEecCCCeEEeccceEEEEecCHHHHhCCCEEEEECCCCCEE
Confidence 0 000001 111111000 68
Q ss_pred EEEeccCccCCcEEEEecCcCCCCCC-CCcCEEEEEEEEeCCCceeecCcEEEE
Q 019908 223 EVHVEKGMQHGQKIAFEGQADEAPDT-ITGDIVFILQLKEHPKFKRKFDDLYVD 275 (334)
Q Consensus 223 ~v~Ip~G~~~G~~i~l~g~G~~~~~~-~~GDL~v~i~v~~~~~f~r~g~dL~~~ 275 (334)
+|+||+|+++|++|+|+|+|++.++. ..|||||+|+|+.|+.|++++..|+.+
T Consensus 296 ~V~Ip~g~~~g~~irl~GkG~p~~~~~~~GDL~V~~~v~~P~~l~~~q~~~l~~ 349 (365)
T PRK14285 296 KIKIPKGTENDEQIIIKNEGMPILHTEKFGNLILIIKIKTPKNLNSNAIKLLEN 349 (365)
T ss_pred EEEeCCCcCCCcEEEECCCCccCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHH
Confidence 99999999999999999999987544 469999999999999999988877655
No 54
>smart00271 DnaJ DnaJ molecular chaperone homology domain.
Probab=99.61 E-value=7.4e-16 Score=109.56 Aligned_cols=55 Identities=69% Similarity=1.055 Sum_probs=51.0
Q ss_pred cccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-----hHHHHHHHHHHhhcCCCcc
Q 019908 12 TKYYEILGVSKSATEDELKKAYRKAAMKNHPDKGGD-----PEKFKELGQAYEVLSDPEK 66 (334)
Q Consensus 12 ~~~y~iLgv~~~a~~~eik~ayr~la~~~hPd~~~~-----~~~f~~i~~Ay~~L~d~~~ 66 (334)
++||++|||+++++.++||+||+++++++|||++++ .+.|++|++||++|+||.+
T Consensus 1 ~~~y~vLgl~~~~~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~~~~~l~~Ay~~L~~~~~ 60 (60)
T smart00271 1 TDYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGDKEEAEEKFKEINEAYEVLSDPEK 60 (60)
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHHHcCCCC
Confidence 489999999999999999999999999999999984 2899999999999999853
No 55
>PRK14277 chaperone protein DnaJ; Provisional
Probab=99.60 E-value=3.5e-15 Score=144.45 Aligned_cols=170 Identities=25% Similarity=0.410 Sum_probs=106.6
Q ss_pred cchhhccccCCCCCCCCCCCCCCcccccccEEEeeeec---------e--e---eeecCcccccccceeeeCCCCCCCCC
Q 019908 91 PFDIFESFFGGGTFGAGGSSRGRRRKQGEDVVHTLKVS---------L--E---DLYNGTTKKLSLSRNILCPKCKGKGS 156 (334)
Q Consensus 91 ~~d~f~~~Fg~~~~~~~~~~~~~~~~~~~di~~~l~~s---------l--~---e~~~G~~~~i~~~~~~~C~~C~G~G~ 156 (334)
|.++|+.+||++..... .+..++.+....+.++|+.. + . ..|.|..... -.....|+.|+|+|.
T Consensus 106 f~~~F~~~fgg~~~~~~-~~~~kg~di~~~l~vtLee~~~G~~~~v~~~r~~~C~~C~G~G~~~-~~~~~~C~~C~G~G~ 183 (386)
T PRK14277 106 FEDIFGDFFGTGRRRAE-TGPQKGADIRYDLELTFEEAAFGTEKEIEVERFEKCDVCKGSGAKP-GSKPVTCPVCHGTGQ 183 (386)
T ss_pred HHHhhcccccCCCcCCC-CCCCCCCCEEEEEEEEHHHHhCCeEEEEEEEeeccCCCCCCCCcCC-CCCCccCCCCCCEEE
Confidence 44688888875322111 11223444445555554322 2 2 3356665542 233568999999996
Q ss_pred ccC----------CcccCCCCCCCcEEEEEEeeccceeeEEEEeCCCCccceEEEccCC-CCC----ccC----------
Q 019908 157 KSG----------ALGKCYGCQGTGMKITTRQIGLGMIQQMQHVCPECRGAGEVISERD-KCP----QCK---------- 211 (334)
Q Consensus 157 ~~~----------~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~~~-~C~----~C~---------- 211 (334)
... ...+|+.|+|+|+++. .+|+.|+|.|.+...+. ... .-.
T Consensus 184 ~~~~~~~~~G~~~~~~~C~~C~G~G~~~~-------------~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~~g~G 250 (386)
T PRK14277 184 VRTRQNTPFGRIVNIRTCDRCHGEGKIIT-------------DPCNKCGGTGRIRRRRKIKVNIPAGIDDGQMITLRGEG 250 (386)
T ss_pred EEEEEeccCceEEEEEECCCCCcceeecc-------------CCCCCCCCCcEEeeeeEEEEecCCCccCCcEEEEcccc
Confidence 532 1257999999998765 78999999987642100 000 000
Q ss_pred ---------CCceeEEeE-------------------------------------EEEEEeccCccCCcEEEEecCcCCC
Q 019908 212 ---------ANKVTQEKK-------------------------------------VLEVHVEKGMQHGQKIAFEGQADEA 245 (334)
Q Consensus 212 ---------G~g~~~~~~-------------------------------------~~~v~Ip~G~~~G~~i~l~g~G~~~ 245 (334)
|.-++.-.. .++|.||+|+++|++++|+|+|++.
T Consensus 251 ~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldG~~~v~ip~g~~~g~~~ri~g~G~p~ 330 (386)
T PRK14277 251 EPGIKGGPNGDLYIVIKVKPHPLFKREGYNVYLEMPITFTDAALGGEIEIPTLDGKVKFTIPEGTQTGTKFRLRGKGIPH 330 (386)
T ss_pred ccCCCCCCCccEEEEEEEecCCCeEEecCCEEEEEEcCHHHHhCCCEEEEEcCCCCEEEEECCCCCCCCEEEECCCCCCC
Confidence 111111000 4689999999999999999999986
Q ss_pred CC-CCCcCEEEEEEEEeCCCceeecCcEEEE
Q 019908 246 PD-TITGDIVFILQLKEHPKFKRKFDDLYVD 275 (334)
Q Consensus 246 ~~-~~~GDL~v~i~v~~~~~f~r~g~dL~~~ 275 (334)
.+ ...|||||+|+|.-|+.++.+..+++.+
T Consensus 331 ~~~~~~GDL~v~~~V~~P~~Ls~~qk~~l~~ 361 (386)
T PRK14277 331 LRGRGRGDQIVKVYIEVPKKLTEKQKELLRE 361 (386)
T ss_pred CCCCCCCCEEEEEEEEeCCCCCHHHHHHHHH
Confidence 43 3579999999999888777666655444
No 56
>KOG0721 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.60 E-value=5.2e-16 Score=134.20 Aligned_cols=71 Identities=39% Similarity=0.720 Sum_probs=65.1
Q ss_pred CCCCccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC----hHHHHHHHHHHhhcCCCcccchhcccChhh
Q 019908 7 RRSNNTKYYEILGVSKSATEDELKKAYRKAAMKNHPDKGGD----PEKFKELGQAYEVLSDPEKRDIYDQYGEDA 77 (334)
Q Consensus 7 ~~~~~~~~y~iLgv~~~a~~~eik~ayr~la~~~hPd~~~~----~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~ 77 (334)
+.....|+|+||||+|+|+++|||+|||+|+++||||++|+ ++.|.+|++||+.|+|+..|..|..||+..
T Consensus 94 ~~~~~fDPyEILGl~pgas~~eIKkaYR~LSik~HPDK~~~~~~~e~~~~~I~KAY~aLTD~~sreN~ekYG~PD 168 (230)
T KOG0721|consen 94 RERQKFDPYEILGLDPGASEKEIKKAYRRLSIKYHPDKQPPEEGDEEFFEAIAKAYQALTDKKSRENWEKYGNPD 168 (230)
T ss_pred HHhhcCCcHHhhCCCCCCCHHHHHHHHHHhhhhhCCCcCCCcchhHHHHHHHHHHHHHhcchhhHHHHHHhCCCC
Confidence 45577899999999999999999999999999999999865 378999999999999999999999999753
No 57
>PRK14284 chaperone protein DnaJ; Provisional
Probab=99.58 E-value=9.6e-15 Score=141.67 Aligned_cols=132 Identities=22% Similarity=0.425 Sum_probs=92.2
Q ss_pred eeecCcccccccceeeeCCCCCCCCCccC------CcccCCCCCCCcEEEEEEeeccceeeEEEEeCCCCccceEEEccC
Q 019908 131 DLYNGTTKKLSLSRNILCPKCKGKGSKSG------ALGKCYGCQGTGMKITTRQIGLGMIQQMQHVCPECRGAGEVISER 204 (334)
Q Consensus 131 e~~~G~~~~i~~~~~~~C~~C~G~G~~~~------~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~~ 204 (334)
+.|.|...... .....|+.|+|+|.+.. ...+|+.|+|+|+++. .+|+.|+|.|++...+
T Consensus 162 ~~C~G~G~~~~-~~~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~~-------------~~C~~C~G~g~v~~~~ 227 (391)
T PRK14284 162 DACSGSGANSS-QGIKVCDRCKGSGQVVQSRGFFSMASTCPECGGEGRVIT-------------DPCSVCRGQGRIKDKR 227 (391)
T ss_pred CCCcccccCCC-CCCeecCccCCeeEEEEEeceEEEEEECCCCCCCCcccC-------------CcCCCCCCcceecceE
Confidence 34666665533 23468999999997432 2357999999998764 7899999998753200
Q ss_pred C-----CCCccC------------------------------------------------------C-CceeEE---eEE
Q 019908 205 D-----KCPQCK------------------------------------------------------A-NKVTQE---KKV 221 (334)
Q Consensus 205 ~-----~C~~C~------------------------------------------------------G-~g~~~~---~~~ 221 (334)
. +=-.-. | ...+.. ...
T Consensus 228 ~l~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~v~tld~g~~ 307 (391)
T PRK14284 228 SVHVHIPAGVDSGMRLKMEGYGDAGQNGAPAGDLYVFIDVEPHPVFERRGDDLILELPIGFVDAALGMKKEIPTLLKEGT 307 (391)
T ss_pred EEEEEECCCCCCCCEEEEeccccCCCCCCCCCCEEEEEEEecCCCceeecCCEEEEEEecHHHHhCCCeEEEeecCCCcE
Confidence 0 000000 1 111110 125
Q ss_pred EEEEeccCccCCcEEEEecCcCCCCC-CCCcCEEEEEEEEeCCCceeecCcEEEEE
Q 019908 222 LEVHVEKGMQHGQKIAFEGQADEAPD-TITGDIVFILQLKEHPKFKRKFDDLYVDH 276 (334)
Q Consensus 222 ~~v~Ip~G~~~G~~i~l~g~G~~~~~-~~~GDL~v~i~v~~~~~f~r~g~dL~~~~ 276 (334)
++|+||+|+++|++++|+|+|++..+ ..+|||||+|+|..|+.++.++.+|+.++
T Consensus 308 i~v~Ip~g~~~g~~~~i~g~G~p~~~~~~~GDL~V~~~v~~P~~l~~~q~~ll~~l 363 (391)
T PRK14284 308 CRLTIPEGIQSGTILKVRGQGFPNVHGKGRGDLLVRISVETPQNLSEEQKELLRQF 363 (391)
T ss_pred EEEEECCccCCCeEEEECCCCCCCCCCCCCCcEEEEEEEECCCCCCHHHHHHHHHH
Confidence 78999999999999999999998653 46899999999999998888887776553
No 58
>PRK14282 chaperone protein DnaJ; Provisional
Probab=99.58 E-value=3.3e-15 Score=143.92 Aligned_cols=131 Identities=20% Similarity=0.332 Sum_probs=93.5
Q ss_pred eeecCcccccccceeeeCCCCCCCCCccCC----------cccCCCCCCCcEEEEEEeeccceeeEEEEeCCCCccceEE
Q 019908 131 DLYNGTTKKLSLSRNILCPKCKGKGSKSGA----------LGKCYGCQGTGMKITTRQIGLGMIQQMQHVCPECRGAGEV 200 (334)
Q Consensus 131 e~~~G~~~~i~~~~~~~C~~C~G~G~~~~~----------~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~ 200 (334)
..|.|....- -.....|+.|+|+|..... ..+|+.|+|+|+.+. .+|+.|+|.|.+
T Consensus 156 ~~C~G~G~~~-~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~-------------~~C~~C~G~g~v 221 (369)
T PRK14282 156 PHCGGTGVEP-GSGYVTCPKCHGTGRIREERRSFFGVFVSERTCERCGGTGKIPG-------------EYCHECGGSGRI 221 (369)
T ss_pred CCCCccCCCC-CCCCcCCCCCCCcCEEEEEEEccCcceEEEEECCCCCCcceeCC-------------CCCCCCCCceeE
Confidence 3456766542 2335689999999975321 357999999998764 789999999864
Q ss_pred Ecc-----CCCCCccCC-------------------CceeEEe-------------------------------------
Q 019908 201 ISE-----RDKCPQCKA-------------------NKVTQEK------------------------------------- 219 (334)
Q Consensus 201 ~~~-----~~~C~~C~G-------------------~g~~~~~------------------------------------- 219 (334)
... .-+=..-.| .-++.-.
T Consensus 222 ~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDl~i~i~v~~h~~F~r~G~DL~~~~~Isl~eAl~G~~~~i~~ld 301 (369)
T PRK14282 222 RRRVRTTVKIPAGVEDGTVLRITGGGNAGYYGGPYGDLYVIVRVRPDPRFKRSGSDLIYDVTIDYLQAILGTTVEVPLPE 301 (369)
T ss_pred EEEEEEEEEeCCCCCCCCEEEEecccCCCCCCCCCCCEEEEEEEecCCcEEEecCCEEEEEEeCHHHHhCCCEEEEeCCC
Confidence 320 000001111 1111100
Q ss_pred -EEEEEEeccCccCCcEEEEecCcCCCC-CCCCcCEEEEEEEEeCCCceeecCcEEEE
Q 019908 220 -KVLEVHVEKGMQHGQKIAFEGQADEAP-DTITGDIVFILQLKEHPKFKRKFDDLYVD 275 (334)
Q Consensus 220 -~~~~v~Ip~G~~~G~~i~l~g~G~~~~-~~~~GDL~v~i~v~~~~~f~r~g~dL~~~ 275 (334)
..++|+||+|+++|++|+|+|+|++.. ++.+|||||+|+|..|+.|++++.+|+.+
T Consensus 302 G~~i~v~Ip~g~~~g~~iri~GkG~p~~~~~~~GDL~V~~~v~~P~~l~~~~~~ll~~ 359 (369)
T PRK14282 302 GGTTMLKIPPGTQPETVFRLKGKGLPNMRYGRRGDLIVNVHVEIPKRLSREERKLLKE 359 (369)
T ss_pred CcEEEEEeCCCcCCCCEEEECCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHH
Confidence 058999999999999999999999864 45689999999999999999999988765
No 59
>cd06257 DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.
Probab=99.58 E-value=3e-15 Score=104.45 Aligned_cols=51 Identities=65% Similarity=1.053 Sum_probs=48.3
Q ss_pred ccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC----hHHHHHHHHHHhhcCC
Q 019908 13 KYYEILGVSKSATEDELKKAYRKAAMKNHPDKGGD----PEKFKELGQAYEVLSD 63 (334)
Q Consensus 13 ~~y~iLgv~~~a~~~eik~ayr~la~~~hPd~~~~----~~~f~~i~~Ay~~L~d 63 (334)
|||++|||+++++.++||+|||+|+++||||++++ .+.|++|++||++|+|
T Consensus 1 ~~y~vLgl~~~~~~~~ik~~y~~l~~~~HPD~~~~~~~~~~~~~~l~~Ay~~L~d 55 (55)
T cd06257 1 DYYDILGVPPDASDEEIKKAYRKLALKYHPDKNPDDPEAEEKFKEINEAYEVLSD 55 (55)
T ss_pred ChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcC
Confidence 69999999999999999999999999999999985 3899999999999986
No 60
>PRK14301 chaperone protein DnaJ; Provisional
Probab=99.57 E-value=7.8e-15 Score=141.37 Aligned_cols=130 Identities=22% Similarity=0.411 Sum_probs=91.2
Q ss_pred eecCcccccccceeeeCCCCCCCCCccC------CcccCCCCCCCcEEEEEEeeccceeeEEEEeCCCCccceEEEccCC
Q 019908 132 LYNGTTKKLSLSRNILCPKCKGKGSKSG------ALGKCYGCQGTGMKITTRQIGLGMIQQMQHVCPECRGAGEVISERD 205 (334)
Q Consensus 132 ~~~G~~~~i~~~~~~~C~~C~G~G~~~~------~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~~~ 205 (334)
.|.|.... .-.....|+.|+|+|.... ...+|+.|+|+|+++. .+|+.|+|.|++...+.
T Consensus 149 ~C~G~G~~-~~~~~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~~-------------~~C~~C~G~g~v~~~~~ 214 (373)
T PRK14301 149 DCGGSGAA-PGTSPETCRHCGGSGQVRQSQGFFQIAVPCPVCRGEGRVIT-------------HPCPKCKGSGIVQQTRE 214 (373)
T ss_pred CCCCcccC-CCCCCcccCCccCeeEEEEEeeeEEEEEeCCCCCceeeecC-------------CCCCCCCCCceeccceE
Confidence 45665554 2233467999999997542 2367999999998765 78999999987643100
Q ss_pred ----------------------CCCcc--CCCceeEEeE-------------------------------------EEEE
Q 019908 206 ----------------------KCPQC--KANKVTQEKK-------------------------------------VLEV 224 (334)
Q Consensus 206 ----------------------~C~~C--~G~g~~~~~~-------------------------------------~~~v 224 (334)
+.... .|.-++.-.. .++|
T Consensus 215 l~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDLiv~i~v~~h~~f~r~G~DL~~~~~Isl~eAl~G~~~~v~tldG~i~v 294 (373)
T PRK14301 215 LKVRIPAGVDTGSRLRLRGEGEPGVHGGPPGDLYVVITVEDDKIFQRQGQDLVVTQEISFVQAALGDRIEVPTLDDPVTL 294 (373)
T ss_pred EEEEeCCCCcCCCEEEEeccccCCCCCCCCcCEEEEEEEEECCCceeecCcEEEEEEecHHHHhCCCeEEEecCCccEEE
Confidence 00000 0111111110 5889
Q ss_pred EeccCccCCcEEEEecCcCCCCC-CCCcCEEEEEEEEeCCCceeecCcEEEE
Q 019908 225 HVEKGMQHGQKIAFEGQADEAPD-TITGDIVFILQLKEHPKFKRKFDDLYVD 275 (334)
Q Consensus 225 ~Ip~G~~~G~~i~l~g~G~~~~~-~~~GDL~v~i~v~~~~~f~r~g~dL~~~ 275 (334)
+||+|+++|++++|+|+|++.++ ...|||||+|+|..|+.++.+..+|+.+
T Consensus 295 ~ip~g~~~g~~~ri~g~G~p~~~~~~~GDL~I~~~V~~P~~l~~~q~~~l~~ 346 (373)
T PRK14301 295 DIPKGTQSGEVFRLRGKGLPYLGSSQKGDLLVEVSVVTPTKLTKRQEELLRE 346 (373)
T ss_pred EECCCcCCCcEEEEcCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHH
Confidence 99999999999999999999754 3579999999999998888877766654
No 61
>PRK14281 chaperone protein DnaJ; Provisional
Probab=99.56 E-value=1.5e-14 Score=140.50 Aligned_cols=129 Identities=19% Similarity=0.353 Sum_probs=89.5
Q ss_pred eecCcccccccceeeeCCCCCCCCCccC----------CcccCCCCCCCcEEEEEEeeccceeeEEEEeCCCCccceEEE
Q 019908 132 LYNGTTKKLSLSRNILCPKCKGKGSKSG----------ALGKCYGCQGTGMKITTRQIGLGMIQQMQHVCPECRGAGEVI 201 (334)
Q Consensus 132 ~~~G~~~~i~~~~~~~C~~C~G~G~~~~----------~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~ 201 (334)
.|.|....-. ....|+.|+|+|.... ...+|+.|+|+|+++. .+|+.|+|.|.+.
T Consensus 168 ~C~G~G~~~~--~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~-------------~~C~~C~G~g~v~ 232 (397)
T PRK14281 168 ECNGTGSKTG--ATETCPTCHGSGEVRQASKTMFGQFVNITACPTCGGEGRVVK-------------DRCPACYGEGIKQ 232 (397)
T ss_pred CCCCcccCCC--CCccCCCCCCCcEEEEEEecccceEEEEEecCCCcceeeeeC-------------CCCCCCCCCccEe
Confidence 4567655533 4568999999996532 1357999999998765 7899999998764
Q ss_pred ccCC-----CCCccC-------------------CCceeEEeE-------------------------------------
Q 019908 202 SERD-----KCPQCK-------------------ANKVTQEKK------------------------------------- 220 (334)
Q Consensus 202 ~~~~-----~C~~C~-------------------G~g~~~~~~------------------------------------- 220 (334)
..+. +=-.-. |.-++.-..
T Consensus 233 ~~~~~~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDL~i~i~~~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldg 312 (397)
T PRK14281 233 GEVTVKVTVPAGVQDGNYLTLRGQGNAGPRGGAPGDLIVVIEEKPHELFVRNGDDVIYNLAVSYPDLVLGTKVEVPTLDG 312 (397)
T ss_pred cceEEEEecCCCCCCCCEEEEecccccCCCCCCCCcEEEEEEEcCCCCeEEecCCEEEEEEecHHHHhcCCeEEeecCCc
Confidence 3100 000000 110111000
Q ss_pred EEEEEeccCccCCcEEEEecCcCCCCC-CCCcCEEEEEEEEeCCCceeecCcEEEE
Q 019908 221 VLEVHVEKGMQHGQKIAFEGQADEAPD-TITGDIVFILQLKEHPKFKRKFDDLYVD 275 (334)
Q Consensus 221 ~~~v~Ip~G~~~G~~i~l~g~G~~~~~-~~~GDL~v~i~v~~~~~f~r~g~dL~~~ 275 (334)
.++|+||+|+++|++++|+|+|++... +..|||||+|+|.-|+.++.+...|+.+
T Consensus 313 ~i~v~ip~g~~~G~~~ri~g~G~P~~~~~~~GDL~V~~~V~~P~~Ls~~qk~~l~~ 368 (397)
T PRK14281 313 AVKLTIPAGTQPETMLRIPGKGIGHLRGSGRGDQYVRVNVFVPKEVSHQDKELLKE 368 (397)
T ss_pred cEEEEeCCccCCCcEEEEcCCCCCCCCCCCCCCEEEEEEEEcCCCCCHHHHHHHHH
Confidence 578999999999999999999998643 4579999999999888777666655544
No 62
>PRK14298 chaperone protein DnaJ; Provisional
Probab=99.54 E-value=8.2e-15 Score=141.35 Aligned_cols=132 Identities=20% Similarity=0.393 Sum_probs=92.9
Q ss_pred eeecCcccccccceeeeCCCCCCCCCccC----------CcccCCCCCCCcEEEEEEeeccceeeEEEEeCCCCccceEE
Q 019908 131 DLYNGTTKKLSLSRNILCPKCKGKGSKSG----------ALGKCYGCQGTGMKITTRQIGLGMIQQMQHVCPECRGAGEV 200 (334)
Q Consensus 131 e~~~G~~~~i~~~~~~~C~~C~G~G~~~~----------~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~ 200 (334)
..|.|...... .....|+.|+|+|.... ...+|+.|+|+|+++. .+|+.|+|.|.+
T Consensus 145 ~~C~G~G~~~~-~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~-------------~~C~~C~G~g~v 210 (377)
T PRK14298 145 STCSGTGAKPG-TSPKRCPTCGGTGQVTTTRSTPLGQFVTTTTCSTCHGRGQVIE-------------SPCPVCSGTGKV 210 (377)
T ss_pred CCCCCCcccCC-CCCCcCCCCCCccEEEEEEecCceeEEEEEeCCCCCCCCcccC-------------CCCCCCCCccEE
Confidence 34566655422 33467999999996532 1357999999998764 789999999976
Q ss_pred EccCC-----CCCccCCCceeEE-------------------eE------------------------------------
Q 019908 201 ISERD-----KCPQCKANKVTQE-------------------KK------------------------------------ 220 (334)
Q Consensus 201 ~~~~~-----~C~~C~G~g~~~~-------------------~~------------------------------------ 220 (334)
...+. +=-.-.|..++.. ..
T Consensus 211 ~~~~~l~V~IppG~~~G~~i~~~g~G~~~~~~~~~GDL~i~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tld 290 (377)
T PRK14298 211 RKTRKITVNVPAGADSGLRLKLSGEGEAGSPGAPSGDLYIVLHVKEHDYFERVGDDIISEIPISFTQAALGADIMVPTLY 290 (377)
T ss_pred EEEEEEEecCCCCCCCCCEEEEecccCCCCCCCCCcCEEEEEEEecCCCeEEEcCcEEEEEEeCHHHHhCCCeEEEecCC
Confidence 43100 0000011111100 00
Q ss_pred -EEEEEeccCccCCcEEEEecCcCCCCC-CCCcCEEEEEEEEeCCCceeecCcEEEEE
Q 019908 221 -VLEVHVEKGMQHGQKIAFEGQADEAPD-TITGDIVFILQLKEHPKFKRKFDDLYVDH 276 (334)
Q Consensus 221 -~~~v~Ip~G~~~G~~i~l~g~G~~~~~-~~~GDL~v~i~v~~~~~f~r~g~dL~~~~ 276 (334)
.++|+||+|+++|++++|+|+|++..+ ...|||||+|+|..|+.|++++.+|+.++
T Consensus 291 G~i~v~ip~g~~~g~~lri~g~G~p~~~~~~~GDL~V~~~V~~P~~ls~~~~~ll~~l 348 (377)
T PRK14298 291 GKVKMNIPPGTQTHSVFRLKDKGMPRLHGHGKGDQLVKVIVKTPTKLTQEQKELLREF 348 (377)
T ss_pred CCEEEEeCCCcccCCEEEECCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999999998643 45799999999999999999998887663
No 63
>PRK14297 chaperone protein DnaJ; Provisional
Probab=99.54 E-value=3.3e-14 Score=137.46 Aligned_cols=130 Identities=22% Similarity=0.330 Sum_probs=88.3
Q ss_pred eecCcccccccceeeeCCCCCCCCCccC----------CcccCCCCCCCcEEEEEEeeccceeeEEEEeCCCCccceEEE
Q 019908 132 LYNGTTKKLSLSRNILCPKCKGKGSKSG----------ALGKCYGCQGTGMKITTRQIGLGMIQQMQHVCPECRGAGEVI 201 (334)
Q Consensus 132 ~~~G~~~~i~~~~~~~C~~C~G~G~~~~----------~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~ 201 (334)
.|.|....- -.....|+.|+|+|.... ...+|+.|+|+|.++. .+|+.|+|.|.+.
T Consensus 153 ~C~G~G~~~-~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~-------------~~C~~C~G~g~v~ 218 (380)
T PRK14297 153 TCNGTGAKP-GTSPKTCDKCGGTGQIRVQRNTPLGSFVSTTTCDKCGGSGKVIE-------------DPCNKCHGKGKVR 218 (380)
T ss_pred CcccccccC-CCcCccCCCccCeEEEEEEEEcCCceeEEEEeCCCCCCCceEcC-------------CCCCCCCCCeEEE
Confidence 456665542 223567999999996531 2357999999998764 7899999998543
Q ss_pred ccC-----CCCCccC-------------------CCceeEEeE-------------------------------------
Q 019908 202 SER-----DKCPQCK-------------------ANKVTQEKK------------------------------------- 220 (334)
Q Consensus 202 ~~~-----~~C~~C~-------------------G~g~~~~~~------------------------------------- 220 (334)
... -+=..-. |.-++.-..
T Consensus 219 ~~~~i~V~Ip~G~~~G~~I~l~g~G~~~~~~~~~GDL~v~v~v~~h~~f~R~G~DL~~~~~Isl~eAl~G~~~~i~~ldg 298 (380)
T PRK14297 219 KNRKIKVNVPAGVDTGNVIPLRGQGEHGKNGGPTGDLYINIRVAPHKTFKRKGFDIYIDKHISFAKAALGTEIKVPTVDG 298 (380)
T ss_pred eEeEEEEEeCCCCCCCcEEEEecCccCCCCCCCCccEEEEEEEcCCCCEEEeCCCEEEEEEeCHHHHhCCCcEEEEcCCC
Confidence 200 0000001 111110000
Q ss_pred EEEEEeccCccCCcEEEEecCcCCCC-CCCCcCEEEEEEEEeCCCceeecCcEEEE
Q 019908 221 VLEVHVEKGMQHGQKIAFEGQADEAP-DTITGDIVFILQLKEHPKFKRKFDDLYVD 275 (334)
Q Consensus 221 ~~~v~Ip~G~~~G~~i~l~g~G~~~~-~~~~GDL~v~i~v~~~~~f~r~g~dL~~~ 275 (334)
.++|+||+|+++|++++|+|+|++.. ++..|||||+|+|.-|+.++.+...|+.+
T Consensus 299 ~~~v~ip~g~~~g~~~ri~g~G~p~~~~~~~GDL~v~~~v~~P~~ls~~q~~~l~~ 354 (380)
T PRK14297 299 EVKYEVPAGTQPGTVFRLKGKGVPRVNSTGRGNQYVTVIVDIPKKLNSKQKEALTM 354 (380)
T ss_pred cEEEEECCCcCCCCEEEEcCCCcCCCCCCCCCcEEEEEEEEcCCCCCHHHHHHHHH
Confidence 57899999999999999999999864 34579999999999888777666555443
No 64
>PRK14289 chaperone protein DnaJ; Provisional
Probab=99.53 E-value=2.9e-14 Score=138.23 Aligned_cols=129 Identities=22% Similarity=0.383 Sum_probs=87.5
Q ss_pred eecCcccccccceeeeCCCCCCCCCccCC----------cccCCCCCCCcEEEEEEeeccceeeEEEEeCCCCccceEEE
Q 019908 132 LYNGTTKKLSLSRNILCPKCKGKGSKSGA----------LGKCYGCQGTGMKITTRQIGLGMIQQMQHVCPECRGAGEVI 201 (334)
Q Consensus 132 ~~~G~~~~i~~~~~~~C~~C~G~G~~~~~----------~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~ 201 (334)
.|.|..... -.....|+.|+|+|..... ..+|+.|+|+|+++. .+|+.|+|.|.+.
T Consensus 159 ~C~G~G~~~-~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~-------------~~C~~C~G~g~v~ 224 (386)
T PRK14289 159 HCHGTGAEG-NNGSETCPTCKGSGSVTRVQNTILGTMQTQSTCPTCNGEGKIIK-------------KKCKKCGGEGIVY 224 (386)
T ss_pred CCCCCCCCC-CCCCCcCCCCcCeEEEEEEEecccceEEEEEecCCCCccccccC-------------cCCCCCCCCcEEe
Confidence 345555442 2345779999999976421 257999999998764 7899999998754
Q ss_pred ccC----------------------CCCCc--cCCCceeEEe-------------------------------------E
Q 019908 202 SER----------------------DKCPQ--CKANKVTQEK-------------------------------------K 220 (334)
Q Consensus 202 ~~~----------------------~~C~~--C~G~g~~~~~-------------------------------------~ 220 (334)
... .+... =.|.-++.-. .
T Consensus 225 ~~~~~~V~Ip~G~~~G~~i~l~g~G~~~~~~~~~GDL~v~v~v~~~~~f~r~g~DL~~~~~Isl~eAl~G~~~~i~~ldg 304 (386)
T PRK14289 225 GEEVITVKIPAGVAEGMQLSMNGKGNAGKHGGVNGDLLVVIEEEPHPELIRDENDLIYNLLLSVPTAALGGAVEVPTIDG 304 (386)
T ss_pred eeEEEEEEeCCCCCCCCEEEEeccccCCCCCCCCccEEEEEEEecCCcccccccceeEEeccCHHHHhCCCeEEeecCCc
Confidence 210 00000 0011111100 0
Q ss_pred EEEEEeccCccCCcEEEEecCcCCCC-CCCCcCEEEEEEEEeCCCceeecCcEEE
Q 019908 221 VLEVHVEKGMQHGQKIAFEGQADEAP-DTITGDIVFILQLKEHPKFKRKFDDLYV 274 (334)
Q Consensus 221 ~~~v~Ip~G~~~G~~i~l~g~G~~~~-~~~~GDL~v~i~v~~~~~f~r~g~dL~~ 274 (334)
.++|.||+|+++|++++|+|+|.+.+ ++..|||||+|+|+-|..++.+...|+.
T Consensus 305 ~i~v~ip~g~~~g~~~ri~g~G~p~~~~~~~GDL~v~~~v~~P~~l~~~q~~~l~ 359 (386)
T PRK14289 305 KAKVKIEAGTQPGKVLRLRNKGLPSVNGYGTGDLLVNVSVYIPETLSKEEKQTLE 359 (386)
T ss_pred eEEEEECCccCCCcEEEECCCCcCCCCCCCCCcEEEEEEEEeCCCCCHHHHHHHH
Confidence 68999999999999999999999864 3468999999999988766666555443
No 65
>PRK14290 chaperone protein DnaJ; Provisional
Probab=99.53 E-value=1.4e-14 Score=139.29 Aligned_cols=130 Identities=21% Similarity=0.431 Sum_probs=93.4
Q ss_pred eecCcccccccceeeeCCCCCCCCCccC----------CcccCCCCCCCcEEEEEEeeccceeeEEEEeCCCCccceEEE
Q 019908 132 LYNGTTKKLSLSRNILCPKCKGKGSKSG----------ALGKCYGCQGTGMKITTRQIGLGMIQQMQHVCPECRGAGEVI 201 (334)
Q Consensus 132 ~~~G~~~~i~~~~~~~C~~C~G~G~~~~----------~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~ 201 (334)
.|.|...... ....|+.|+|+|.... ...+|+.|+|+|+++. .+|+.|+|.|.+.
T Consensus 154 ~C~G~g~~~~--~~~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~G~~~~-------------~~C~~C~G~g~v~ 218 (365)
T PRK14290 154 DCSGTGAKNG--KLITCPTCHGTGQQRIVRGQGFFRMVTVTTCRTCGGRGRIPE-------------EKCPRCNGTGTVV 218 (365)
T ss_pred CCccccCCCC--CCccCCCCCCcCEEEEEeccCeEEEEEEEeCCCCCCceeEcc-------------CCCCCCCCceeEE
Confidence 4666665432 4568999999996431 1257999999998754 7899999998854
Q ss_pred ccC-----CCCCccCC-----------------CceeEEe-------------------------------------EEE
Q 019908 202 SER-----DKCPQCKA-----------------NKVTQEK-------------------------------------KVL 222 (334)
Q Consensus 202 ~~~-----~~C~~C~G-----------------~g~~~~~-------------------------------------~~~ 222 (334)
... -+=-.-.| .-++.-. ..+
T Consensus 219 ~~~~~~V~Ip~G~~~G~~i~~~g~G~~~~~~~GDL~v~v~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~I~~~~g~i 298 (365)
T PRK14290 219 VNEDISVKIPKGATDNLRLRVKGKGQSYGGRTGDLYVVLRVNNDPNIQRINDDLYVDQKINFPQAALGGEIEIKLFREKY 298 (365)
T ss_pred EeeEEEEEECCCCCCCcEEEEccccCCCCCCCCCEEEEEEEcCCCCEEEecCCEEEEEEeCHHHHhCCCEEEEEcCCceE
Confidence 200 00000011 1011000 068
Q ss_pred EEEeccCccCCcEEEEecCcCCCCC-CCCcCEEEEEEEEeCCCceeecCcEEEEE
Q 019908 223 EVHVEKGMQHGQKIAFEGQADEAPD-TITGDIVFILQLKEHPKFKRKFDDLYVDH 276 (334)
Q Consensus 223 ~v~Ip~G~~~G~~i~l~g~G~~~~~-~~~GDL~v~i~v~~~~~f~r~g~dL~~~~ 276 (334)
+|+||+|+++|++|+|+|+|++.++ ..+|||||+|+|..|+.|++++.+|+.++
T Consensus 299 ~V~Ip~g~~~g~~iri~g~G~p~~~~~~~GDL~V~~~V~~P~~l~~~~~~ll~~~ 353 (365)
T PRK14290 299 NLKIPEGTQPGEVLKIKGAGMPHLNGHGSGDLLVRINVEVPKRLTSKQKELIREF 353 (365)
T ss_pred EEEECCccCCCcEEEECCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHH
Confidence 9999999999999999999998654 35899999999999999999999988763
No 66
>PRK14294 chaperone protein DnaJ; Provisional
Probab=99.53 E-value=1.3e-14 Score=139.65 Aligned_cols=130 Identities=22% Similarity=0.401 Sum_probs=92.6
Q ss_pred eecCcccccccceeeeCCCCCCCCCccC------CcccCCCCCCCcEEEEEEeeccceeeEEEEeCCCCccceEEEccCC
Q 019908 132 LYNGTTKKLSLSRNILCPKCKGKGSKSG------ALGKCYGCQGTGMKITTRQIGLGMIQQMQHVCPECRGAGEVISERD 205 (334)
Q Consensus 132 ~~~G~~~~i~~~~~~~C~~C~G~G~~~~------~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~~~ 205 (334)
.|.|..... -.....|+.|+|+|.... ...+|+.|+|+|+.+. .+|+.|+|.|.+....
T Consensus 149 ~C~G~G~~~-~~~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~~~-------------~~C~~C~G~g~v~~~~- 213 (366)
T PRK14294 149 ECHGSGCEP-GTSPTTCPQCGGSGQVTQSQGFFSIRTTCPRCRGMGKVIV-------------SPCKTCHGQGRVRVSK- 213 (366)
T ss_pred CCCCccccC-CCCcccCCCcCCeEEEEEEeeeEEEEeeCCCCCCcCeecC-------------cCCCCCCCceEeecce-
Confidence 356655542 223568999999997542 2357999999998764 7899999998764310
Q ss_pred CCCc------cC-------------------CCceeEEeE-------------------------------------EEE
Q 019908 206 KCPQ------CK-------------------ANKVTQEKK-------------------------------------VLE 223 (334)
Q Consensus 206 ~C~~------C~-------------------G~g~~~~~~-------------------------------------~~~ 223 (334)
.-.. -. |.-++.-.. .++
T Consensus 214 ~l~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDl~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldG~~~ 293 (366)
T PRK14294 214 TVQVKIPAGVDTGSRLRLRGEGEAGVRGGPPGDLYVFLTVEPHEFFERDGNDVHCKVPISFVQAALGAQIEVPTLEGERE 293 (366)
T ss_pred eEEEecCCCCcCCcEEEEccCccCCCCCCCCCcEEEEEEEccCCcceecCCCEEEEEEeCHHHHhCCCeEEEECCCCcEE
Confidence 0000 00 110111000 568
Q ss_pred EEeccCccCCcEEEEecCcCCCCC-CCCcCEEEEEEEEeCCCceeecCcEEEEE
Q 019908 224 VHVEKGMQHGQKIAFEGQADEAPD-TITGDIVFILQLKEHPKFKRKFDDLYVDH 276 (334)
Q Consensus 224 v~Ip~G~~~G~~i~l~g~G~~~~~-~~~GDL~v~i~v~~~~~f~r~g~dL~~~~ 276 (334)
|+||+|+++|++|+|+|+|++.++ ..+|||||+|+|..|+.|++++.+|+.++
T Consensus 294 v~ip~g~~~g~~iri~G~G~p~~~~~~~GDL~V~~~v~~P~~l~~~q~~ll~~~ 347 (366)
T PRK14294 294 LKIPKGTQPGDIFRFKGKGIPSLRGGGRGDQIIEVEVKVPTRLTKKQEELLTEF 347 (366)
T ss_pred EEECCCcCCCCEEEECCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHH
Confidence 999999999999999999998654 35899999999999999999988887663
No 67
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.53 E-value=6.5e-15 Score=138.39 Aligned_cols=88 Identities=50% Similarity=0.927 Sum_probs=74.0
Q ss_pred CCCccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCh-----HHHHHHHHHHhhcCCCcccchhcccChhhhhcCC
Q 019908 8 RSNNTKYYEILGVSKSATEDELKKAYRKAAMKNHPDKGGDP-----EKFKELGQAYEVLSDPEKRDIYDQYGEDALKEGM 82 (334)
Q Consensus 8 ~~~~~~~y~iLgv~~~a~~~eik~ayr~la~~~hPd~~~~~-----~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~~~~ 82 (334)
++..+|||+|||++.+|+..|||+|||++|+.||||++... .+|+++.+||.+|+|+.+|..||. |.+--+.+
T Consensus 369 kSkRkd~ykilGi~~~as~~eikkayrk~AL~~Hpd~~agsq~eaE~kFkevgeAy~il~d~~kr~r~ds-g~dle~~~- 446 (486)
T KOG0550|consen 369 KSKRKDWYKILGISRNASDDEIKKAYRKLALVHHPDKNAGSQKEAEAKFKEVGEAYTILSDPMKRVRFDS-GQDLEEVG- 446 (486)
T ss_pred HhhhhhHHHHhhhhhhcccchhhhHHHHHHHHhCCCcCcchhHHHHHHHHHHHHHHHHhcCHHHHhhccc-ccchhhhc-
Confidence 46789999999999999999999999999999999998643 689999999999999999999998 43322222
Q ss_pred CCCCCCCCcchhhccc
Q 019908 83 GGAGAAHNPFDIFESF 98 (334)
Q Consensus 83 ~~~~~~~~~~d~f~~~ 98 (334)
+++++.+|+++|..|
T Consensus 447 -~~~a~~dp~~~~~a~ 461 (486)
T KOG0550|consen 447 -SGGAGFDPFNIFRAF 461 (486)
T ss_pred -CCCcCcChhhhhhhc
Confidence 233667888888877
No 68
>PTZ00100 DnaJ chaperone protein; Provisional
Probab=99.52 E-value=1.5e-14 Score=114.96 Aligned_cols=57 Identities=25% Similarity=0.514 Sum_probs=52.7
Q ss_pred CCCCCccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHhhcC
Q 019908 6 PRRSNNTKYYEILGVSKSATEDELKKAYRKAAMKNHPDKGGDPEKFKELGQAYEVLS 62 (334)
Q Consensus 6 ~~~~~~~~~y~iLgv~~~a~~~eik~ayr~la~~~hPd~~~~~~~f~~i~~Ay~~L~ 62 (334)
.+.+...++|+||||+++|+.+|||+|||+|++++|||++++++.|++|++||++|.
T Consensus 59 ~~~Ms~~eAy~ILGv~~~As~~eIkkaYRrLa~~~HPDkgGs~~~~~kIneAyevL~ 115 (116)
T PTZ00100 59 ENPMSKSEAYKILNISPTASKERIREAHKQLMLRNHPDNGGSTYIASKVNEAKDLLL 115 (116)
T ss_pred cCCCCHHHHHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHh
Confidence 345567899999999999999999999999999999999888899999999999985
No 69
>PF00684 DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR001305 The hsp70 chaperone machine performs many diverse roles in the cell, including folding of nascent proteins, translocation of polypeptides across organelle membranes, coordinating responses to stress, and targeting selected proteins for degradation. DnaJ is a member of the hsp40 family of molecular chaperones, which is also called the J-protein family, the members of which regulate the activity of hsp70s. DnaJ (hsp40) binds to DnaK (hsp70) and stimulates its ATPase activity, generating the ADP-bound state of DnaK, which interacts stably with the polypeptide substrate []. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. DnaJ consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acid residues, a glycine and phenylalanine-rich domain ('G/F' domain), a central cysteine rich domain (CR-type zinc finger) containing four repeats of a CXXCXGXG motif which can coordinate two zinc atom and a C-terminal domain (CTD) []. This entry represents the central cysteine-rich (CR) domain of DnaJ proteins. This central cysteine rich domain (CR-type zinc finger) has an overall V-shaped extended beta-hairpin topology and contains four repeats of the motif CXXCXGXG where X is any amino acid. The isolated cysteine rich domain folds in zinc dependent fashion. Each set of two repeats binds one unit of zinc. Although this domain has been implicated in substrate binding, no evidence of specific interaction between the isolated DnaJ cysteine rich domain and various hydrophobic peptides has been found [].; GO: 0031072 heat shock protein binding, 0051082 unfolded protein binding; PDB: 1NLT_A 2CTT_A 1EXK_A.
Probab=99.51 E-value=4.6e-14 Score=102.34 Aligned_cols=65 Identities=43% Similarity=0.977 Sum_probs=51.6
Q ss_pred CCCCCCCCCccCC-cccCCCCCCCcEEEEEEeeccceeeEEEEeCCCCccceEEEccCCCCCccCCCc
Q 019908 148 CPKCKGKGSKSGA-LGKCYGCQGTGMKITTRQIGLGMIQQMQHVCPECRGAGEVISERDKCPQCKANK 214 (334)
Q Consensus 148 C~~C~G~G~~~~~-~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g 214 (334)
|+.|+|+|..... ..+|+.|+|+|+++..++ .++++++++.+|+.|+|+|+++ ..++|+.|+|+|
T Consensus 1 C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~-~~~~~~~~~~~C~~C~G~G~~i-~~~~C~~C~G~g 66 (66)
T PF00684_consen 1 CPKCNGTGAKPGKKPKTCPQCNGSGQVTRRQQ-TPGGVFQMQQTCPKCGGTGKII-EKDPCKTCKGSG 66 (66)
T ss_dssp -CCCTTTSB-STTT-EE-TTSSSSSEEEEEEE-SSSTTEEEEEE-TTTSSSSEE--TSSB-SSSTTSS
T ss_pred CCcCCCcccCCCCCCcCCcCCCCeeEEEEEEe-CCCeEEEEEEECCCCcceeeEE-CCCCCCCCCCcC
Confidence 8999999996654 568999999999999888 6677778899999999999999 569999999975
No 70
>PRK14293 chaperone protein DnaJ; Provisional
Probab=99.50 E-value=4.2e-14 Score=136.48 Aligned_cols=132 Identities=19% Similarity=0.335 Sum_probs=92.8
Q ss_pred eeecCcccccccceeeeCCCCCCCCCccC----------CcccCCCCCCCcEEEEEEeeccceeeEEEEeCCCCccceEE
Q 019908 131 DLYNGTTKKLSLSRNILCPKCKGKGSKSG----------ALGKCYGCQGTGMKITTRQIGLGMIQQMQHVCPECRGAGEV 200 (334)
Q Consensus 131 e~~~G~~~~i~~~~~~~C~~C~G~G~~~~----------~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~ 200 (334)
..|.|...... .....|+.|+|+|.... ...+|+.|+|+|+.+. .+|+.|.|.|++
T Consensus 147 ~~C~G~G~~~~-~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~-------------~~C~~C~G~g~v 212 (374)
T PRK14293 147 ETCRGSGAKPG-TGPTTCSTCGGAGQVRRATRTPFGSFTQVSECPTCNGTGQVIE-------------DPCDACGGQGVK 212 (374)
T ss_pred CCCCCcCCCCC-CCCeeCCCCCCcceEEEEEecCcceEEEEeeCCCCCcceeEec-------------cCCCCCCCCccc
Confidence 34566555432 23467999999997431 1257999999999765 789999999875
Q ss_pred EccCC-CCCcc-----------------------CCCceeEEeE------------------------------------
Q 019908 201 ISERD-KCPQC-----------------------KANKVTQEKK------------------------------------ 220 (334)
Q Consensus 201 ~~~~~-~C~~C-----------------------~G~g~~~~~~------------------------------------ 220 (334)
..... ....= .|.-++.-..
T Consensus 213 ~~~~~~~V~IppG~~~G~~i~l~g~G~~~~~~~~~GDL~v~v~v~~~~~f~r~g~DL~~~~~Isl~eAl~G~~~~i~~ld 292 (374)
T PRK14293 213 QVTKKLKINIPAGVDTGTRLRVSGEGDAGLRGGPPGDLYVYLFVKNDPEFRRDGINILSEIKISYLQAILGDTLEVDTVD 292 (374)
T ss_pred ccceEEEEEeCCCCCCCCEEEEccCccCCCCCCCCcCEEEEEEEeCCCccChhhhceEEEeccCHHHHhCCCEEEecCCC
Confidence 43111 00000 0111111100
Q ss_pred -EEEEEeccCccCCcEEEEecCcCCCCCC--CCcCEEEEEEEEeCCCceeecCcEEEEE
Q 019908 221 -VLEVHVEKGMQHGQKIAFEGQADEAPDT--ITGDIVFILQLKEHPKFKRKFDDLYVDH 276 (334)
Q Consensus 221 -~~~v~Ip~G~~~G~~i~l~g~G~~~~~~--~~GDL~v~i~v~~~~~f~r~g~dL~~~~ 276 (334)
.++|+||+|+++|++++|+|+|++.+++ ..|||||+|+|..|+.|++++.+|+.++
T Consensus 293 G~~~i~ip~~~~~g~~~ri~g~G~p~~~~~~~~GDL~v~~~v~~P~~l~~~~~~l~~~l 351 (374)
T PRK14293 293 GPVELTIPAGTQPNTVLTLENKGVPRLGNPVARGDHLITVKVKIPTRISDEERELLEKL 351 (374)
T ss_pred CCEEEEeCCCCCCCCEEEECCCCCCCCCCCCCcCCEEEEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999999999986543 4799999999999999999998887663
No 71
>PRK14295 chaperone protein DnaJ; Provisional
Probab=99.50 E-value=3.7e-14 Score=137.38 Aligned_cols=131 Identities=21% Similarity=0.391 Sum_probs=92.0
Q ss_pred eeecCcccccccceeeeCCCCCCCCCccC------CcccCCCCCCCcEEEEEEeeccceeeEEEEeCCCCccceEEEccC
Q 019908 131 DLYNGTTKKLSLSRNILCPKCKGKGSKSG------ALGKCYGCQGTGMKITTRQIGLGMIQQMQHVCPECRGAGEVISER 204 (334)
Q Consensus 131 e~~~G~~~~i~~~~~~~C~~C~G~G~~~~------~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~~ 204 (334)
+.|.|....- -.....|+.|+|+|.... ...+|+.|+|+|+++. .+|+.|.|.|++...+
T Consensus 170 ~~C~G~G~~~-~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~-------------~~C~~C~G~g~~~~~~ 235 (389)
T PRK14295 170 PACSGTGAKN-GTTPRVCPTCSGTGQVSRNSGGFSLSEPCPDCKGRGLIAD-------------DPCLVCKGSGRAKSSR 235 (389)
T ss_pred CCCcccccCC-CCCCcCCCCCCCEeEEEEEecceEEEEecCCCcceeEEec-------------cCCCCCCCCceEeeee
Confidence 4566766552 233568999999997432 2357999999999765 7899999998754310
Q ss_pred C----------------------CCCc--cCCCceeEEe--------------------------------------EEE
Q 019908 205 D----------------------KCPQ--CKANKVTQEK--------------------------------------KVL 222 (334)
Q Consensus 205 ~----------------------~C~~--C~G~g~~~~~--------------------------------------~~~ 222 (334)
. +... -.|.-++.-. +.+
T Consensus 236 ~l~V~Ip~G~~~G~~i~l~g~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~I~tldG~~~ 315 (389)
T PRK14295 236 TMQVRIPAGVSDGQRIRLRGKGAPGERGGPAGDLYVVVHVDPHPVFGRSGDNLTVTVPVTFPEAALGAEVRVPTLGGPPV 315 (389)
T ss_pred EEEEEeCCCCCCCCEEEEcccccCCCCCCCCccEEEEEEEecCCCEEEecCCEEEEEeecHHHHhCCCeEEEECCCCCEE
Confidence 0 0000 0011111100 168
Q ss_pred EEEeccCccCCcEEEEecCcCCCCCCCCcCEEEEEEEEeCCCceeecCcEEEE
Q 019908 223 EVHVEKGMQHGQKIAFEGQADEAPDTITGDIVFILQLKEHPKFKRKFDDLYVD 275 (334)
Q Consensus 223 ~v~Ip~G~~~G~~i~l~g~G~~~~~~~~GDL~v~i~v~~~~~f~r~g~dL~~~ 275 (334)
+|+||+|+++|++|+|+|+|++..++..|||||+|+|.-|+.+..+...|+.+
T Consensus 316 ~v~ip~g~~~g~~iri~G~G~p~~~~~~GDL~i~~~v~~P~~Ls~~qk~~l~~ 368 (389)
T PRK14295 316 TVKLPPGTPNGRVLRVRGKGAVRKDGTRGDLLVTVEVAVPKDLSGKAREALEA 368 (389)
T ss_pred EEEECCccCCCcEEEECCCCcCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHH
Confidence 99999999999999999999997666789999999999888777666665544
No 72
>PRK14287 chaperone protein DnaJ; Provisional
Probab=99.49 E-value=4.1e-14 Score=136.31 Aligned_cols=132 Identities=19% Similarity=0.334 Sum_probs=92.2
Q ss_pred eeecCcccccccceeeeCCCCCCCCCccC----------CcccCCCCCCCcEEEEEEeeccceeeEEEEeCCCCccceEE
Q 019908 131 DLYNGTTKKLSLSRNILCPKCKGKGSKSG----------ALGKCYGCQGTGMKITTRQIGLGMIQQMQHVCPECRGAGEV 200 (334)
Q Consensus 131 e~~~G~~~~i~~~~~~~C~~C~G~G~~~~----------~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~ 200 (334)
+.|.|.... .-.....|+.|+|+|.... ...+|+.|+|+|+++. .+|+.|+|.|.+
T Consensus 142 ~~C~G~G~~-~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~-------------~~C~~C~G~g~v 207 (371)
T PRK14287 142 GTCHGSGAK-PGTKPETCSHCGGSGQLNVEQNTPFGRVVNRRVCHHCEGTGKIIK-------------QKCATCGGKGKV 207 (371)
T ss_pred CCCCCcccC-CCCCCcccCCCCCEEEEEEEEecCCceEEEEEeCCCCCCCCcccc-------------ccCCCCCCeeEE
Confidence 446676654 2334568999999996532 1257999999998765 789999999865
Q ss_pred EccC-----C-----------------CCCc--cCCCceeEEeE------------------------------------
Q 019908 201 ISER-----D-----------------KCPQ--CKANKVTQEKK------------------------------------ 220 (334)
Q Consensus 201 ~~~~-----~-----------------~C~~--C~G~g~~~~~~------------------------------------ 220 (334)
.... - +-.. =.|.-++.-..
T Consensus 208 ~~~~~l~V~Ip~G~~~G~~i~~~G~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~~ld 287 (371)
T PRK14287 208 RKRKKINVKVPAGIDHGQQLRVSGQGEAGVNGGPPGDLYVVFNVKPHEFFERDGDDIYCEMPLTFPQVALGDEIEVPTLN 287 (371)
T ss_pred eeeEEEEEEECCcCCCCCEEEEccCCcCCCCCCCCccEEEEEEEecCCCEEEecCCeEEEEeccHHHHhCCCEEEEEcCC
Confidence 3200 0 0000 00111111000
Q ss_pred -EEEEEeccCccCCcEEEEecCcCCCCC-CCCcCEEEEEEEEeCCCceeecCcEEEEE
Q 019908 221 -VLEVHVEKGMQHGQKIAFEGQADEAPD-TITGDIVFILQLKEHPKFKRKFDDLYVDH 276 (334)
Q Consensus 221 -~~~v~Ip~G~~~G~~i~l~g~G~~~~~-~~~GDL~v~i~v~~~~~f~r~g~dL~~~~ 276 (334)
.++|+||+|+++|++++|+|+|++..+ ...|||||+|+|..|+.|+++...|+.++
T Consensus 288 g~i~v~ip~g~~~g~~~ri~g~G~p~~~~~~~GDL~V~~~v~~P~~l~~~q~~ll~~l 345 (371)
T PRK14287 288 GKVKLKIPAGTQTGTSFRLRGKGVPNVHGRGQGDQHVQVRVVTPKNLTEKEKELMREF 345 (371)
T ss_pred CCEEEEECCCccCCcEEEEcCCCccCCCCCCCCCEEEEEEEEcCCCCCHHHHHHHHHH
Confidence 578999999999999999999998643 45799999999999999998887776653
No 73
>PRK14278 chaperone protein DnaJ; Provisional
Probab=99.49 E-value=5.7e-14 Score=135.66 Aligned_cols=131 Identities=22% Similarity=0.387 Sum_probs=90.5
Q ss_pred eeecCcccccccceeeeCCCCCCCCCccC----------CcccCCCCCCCcEEEEEEeeccceeeEEEEeCCCCccceEE
Q 019908 131 DLYNGTTKKLSLSRNILCPKCKGKGSKSG----------ALGKCYGCQGTGMKITTRQIGLGMIQQMQHVCPECRGAGEV 200 (334)
Q Consensus 131 e~~~G~~~~i~~~~~~~C~~C~G~G~~~~----------~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~ 200 (334)
+.|.|....- -.....|+.|+|+|.... ...+|+.|+|+|+++. .+|+.|+|.|++
T Consensus 143 ~~C~G~G~~~-~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~-------------~~C~~C~G~g~v 208 (378)
T PRK14278 143 DRCHGKGTAG-DSKPVTCDTCGGRGEVQTVQRSFLGQVMTSRPCPTCRGVGEVIP-------------DPCHECAGDGRV 208 (378)
T ss_pred CCCcCccCCC-CCCceecCCccCceEEEEEEeccceeEEEEEECCCCCccceeeC-------------CCCCCCCCceeE
Confidence 3466666542 234568999999997431 1357999999999765 789999999875
Q ss_pred EccCC----------------------CCC--ccCCCceeEE--------------------------------------
Q 019908 201 ISERD----------------------KCP--QCKANKVTQE-------------------------------------- 218 (334)
Q Consensus 201 ~~~~~----------------------~C~--~C~G~g~~~~-------------------------------------- 218 (334)
...+. .-+ .-.|.-++.-
T Consensus 209 ~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDL~v~i~~~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tld 288 (378)
T PRK14278 209 RARREITVKIPAGVGDGMRIRLAAQGEVGPGGGPAGDLYVEVHEQPHDVFVRDGDDLHCTVSVPMVDAALGTTVTVEAIL 288 (378)
T ss_pred ecceEEEEEECCCCCCCcEEEEccCcCCCCCCCCCCCEEEEEEECcCCCEEEcCCCEEEEEecCHHHHhcCCeEEEecCC
Confidence 43100 000 0001111111
Q ss_pred eEEEEEEeccCccCCcEEEEecCcCCCC-CCCCcCEEEEEEEEeCCCceeecCcEEEE
Q 019908 219 KKVLEVHVEKGMQHGQKIAFEGQADEAP-DTITGDIVFILQLKEHPKFKRKFDDLYVD 275 (334)
Q Consensus 219 ~~~~~v~Ip~G~~~G~~i~l~g~G~~~~-~~~~GDL~v~i~v~~~~~f~r~g~dL~~~ 275 (334)
...++|+||+|+++|++++|+|+|++.. +...|||||+|+|.-|+.++.+...|+.+
T Consensus 289 ~~~i~v~ip~g~~~g~~lrl~g~G~p~~~~~~~GDL~V~~~V~~P~~Ls~~qk~~l~~ 346 (378)
T PRK14278 289 DGPSEITIPPGTQPGSVITLRGRGMPHLRSGGRGDLHAHVEVVVPTRLDHEDIELLRE 346 (378)
T ss_pred CCeEEEEeCCCcCCCcEEEECCCCCCCCCCCCCCCEEEEEEEEcCCCCCHHHHHHHHH
Confidence 1168899999999999999999999864 34579999999999888777766655544
No 74
>PRK14296 chaperone protein DnaJ; Provisional
Probab=99.47 E-value=7.4e-14 Score=134.50 Aligned_cols=131 Identities=17% Similarity=0.355 Sum_probs=89.1
Q ss_pred eeecCcccccccceeeeCCCCCCCCCccCC----------cccCCCCCCCcEEEEEEeeccceeeEEEEeCCCCccceEE
Q 019908 131 DLYNGTTKKLSLSRNILCPKCKGKGSKSGA----------LGKCYGCQGTGMKITTRQIGLGMIQQMQHVCPECRGAGEV 200 (334)
Q Consensus 131 e~~~G~~~~i~~~~~~~C~~C~G~G~~~~~----------~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~ 200 (334)
..|.|...... .....|+.|+|+|..... ..+|+.|+|+|+++. .+|+.|+|.|.+
T Consensus 153 ~~C~G~G~~~~-~~~~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~~~~-------------~~C~~C~G~g~v 218 (372)
T PRK14296 153 SKCFGSGAESN-SDIHICNNCHGTGEVLVQKNMGFFQFQQSAKCNVCNGAGKIIK-------------NKCKNCKGKGKY 218 (372)
T ss_pred CCCCCCccCCC-CCCccCCCCCCCceEEEEEeccceEEEEEecCCCcCCcceeec-------------ccccCCCCceEE
Confidence 44566655422 334679999999975421 257999999999765 789999999865
Q ss_pred EccC----------------------CCCCcc--CCCceeEEeE------------------------------------
Q 019908 201 ISER----------------------DKCPQC--KANKVTQEKK------------------------------------ 220 (334)
Q Consensus 201 ~~~~----------------------~~C~~C--~G~g~~~~~~------------------------------------ 220 (334)
...+ .....= .|.-++.-..
T Consensus 219 ~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDL~v~v~v~~h~~F~R~~G~DL~~~~~Isl~eAllG~~~~i~tl 298 (372)
T PRK14296 219 LERKKIEVNIPKGIRPNQQIKLSQKGHASLNNGVNGDLIIDIYLKESKVFEIINNNDILMTYNISYLDAILGNEIIIKTL 298 (372)
T ss_pred EEEEEEEEEECCCCCCCCEEEEeccccCCCCCCCCccEEEEEEEeCCCCEEEeCCCcEEEEEecCHHHHhCCCEEEeeCC
Confidence 3200 000000 0110110000
Q ss_pred --EEEEEeccCccCCcEEEEecCcCCCC--CCCCcCEEEEEEEEeCCCceeecCcEEEE
Q 019908 221 --VLEVHVEKGMQHGQKIAFEGQADEAP--DTITGDIVFILQLKEHPKFKRKFDDLYVD 275 (334)
Q Consensus 221 --~~~v~Ip~G~~~G~~i~l~g~G~~~~--~~~~GDL~v~i~v~~~~~f~r~g~dL~~~ 275 (334)
.++|+||+++++|++++|+|+|++.. .+..|||||+|+|.-|+.++.+...|+.+
T Consensus 299 dG~~~v~ip~~t~~g~~~ri~GkGmP~~~~~~~~GDL~V~~~V~~P~~Ls~~q~~~l~~ 357 (372)
T PRK14296 299 DGDIKYKLPKSINSNELIIINNKGLYKSINKDKRGDLIIKVNIVVPKNLSKKEKELIEQ 357 (372)
T ss_pred CCCEEEEECCccCCCcEEEEcCCCCCcCCCCCCcCCEEEEEEEECCCCCCHHHHHHHHH
Confidence 57899999999999999999999842 34579999999999888777666655443
No 75
>PRK14291 chaperone protein DnaJ; Provisional
Probab=99.47 E-value=2e-13 Score=132.07 Aligned_cols=117 Identities=25% Similarity=0.398 Sum_probs=79.8
Q ss_pred eecCcccccccceeeeCCCCCCCCCccC------CcccCCCCCCCcEEEEEEeeccceeeEEEEeCCCCccceEEEccC-
Q 019908 132 LYNGTTKKLSLSRNILCPKCKGKGSKSG------ALGKCYGCQGTGMKITTRQIGLGMIQQMQHVCPECRGAGEVISER- 204 (334)
Q Consensus 132 ~~~G~~~~i~~~~~~~C~~C~G~G~~~~------~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~~- 204 (334)
.|.|..... -.....|+.|+|+|.... ...+|+.|+|+|. +. .+|+.|+|.|.+...+
T Consensus 161 ~C~G~G~~~-~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~-~~-------------~~C~~C~G~g~v~~~~~ 225 (382)
T PRK14291 161 ACGGTGYDP-GSGEKVCPTCGGSGEIYQRGGFFRISQTCPTCGGEGV-LR-------------EPCSKCNGRGLVIKKET 225 (382)
T ss_pred CCccccCCC-CCCCccCCCCCCceEEEEecceEEEEecCCCCCCceE-Ec-------------cCCCCCCCCceEEeeeE
Confidence 356655542 234567999999997532 2367999999994 32 7899999998754200
Q ss_pred ----CCCCccCCC-------------------ceeEEe--------------------------------------EEEE
Q 019908 205 ----DKCPQCKAN-------------------KVTQEK--------------------------------------KVLE 223 (334)
Q Consensus 205 ----~~C~~C~G~-------------------g~~~~~--------------------------------------~~~~ 223 (334)
-+=-.-.|. -++.-. ..++
T Consensus 226 l~V~Ip~G~~~G~~i~~~g~G~~~~~g~~~GDL~v~i~~~~h~~F~r~G~DL~~~~~Isl~eAl~G~~~~i~~ldG~~l~ 305 (382)
T PRK14291 226 IKVRIPPGVDNGSKLRVPGKGHAGRFGGPPGDLYIIVKVKPHPLFERRGDNLYLDVNITVAEAVLGTELEVPLLDGKKEK 305 (382)
T ss_pred EEEEeCCCCCCCCEEEEecCcCCCCCCCCCccEEEEEEEccCCCeeeecCCeEEEEEeeHHHHhCCCEEEEecCCCCEEE
Confidence 000000111 011000 0589
Q ss_pred EEeccCccCCcEEEEecCcCCCCC-CCCcCEEEEEEEEeCC
Q 019908 224 VHVEKGMQHGQKIAFEGQADEAPD-TITGDIVFILQLKEHP 263 (334)
Q Consensus 224 v~Ip~G~~~G~~i~l~g~G~~~~~-~~~GDL~v~i~v~~~~ 263 (334)
|+||+|+++|++|+|+|+|++.++ ..+|||||+|+|.-|.
T Consensus 306 V~Ip~g~~~G~~i~i~G~G~p~~~~~~~GDL~V~~~V~~P~ 346 (382)
T PRK14291 306 VKIPPGTKEGDKIRVPGKGMPRLKGSGYGDLVVRVHIDVPK 346 (382)
T ss_pred EEECCccCCCCEEEECCCCCCCCCCCCCCCEEEEEEEEeCC
Confidence 999999999999999999998654 4679999999999876
No 76
>PRK14276 chaperone protein DnaJ; Provisional
Probab=99.46 E-value=7.5e-14 Score=134.96 Aligned_cols=131 Identities=21% Similarity=0.353 Sum_probs=90.2
Q ss_pred eeecCcccccccceeeeCCCCCCCCCccC----------CcccCCCCCCCcEEEEEEeeccceeeEEEEeCCCCccceEE
Q 019908 131 DLYNGTTKKLSLSRNILCPKCKGKGSKSG----------ALGKCYGCQGTGMKITTRQIGLGMIQQMQHVCPECRGAGEV 200 (334)
Q Consensus 131 e~~~G~~~~i~~~~~~~C~~C~G~G~~~~----------~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~ 200 (334)
+.|.|....-. .....|+.|+|+|.+.. ...+|+.|+|+|+++. .+|+.|+|.|++
T Consensus 150 ~~C~G~G~~~~-~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~-------------~~C~~C~G~g~~ 215 (380)
T PRK14276 150 HTCNGSGAKPG-TSPVTCGKCHGSGVITVDTQTPLGMMRRQVTCDVCHGTGKEIK-------------EPCQTCHGTGHE 215 (380)
T ss_pred CCCcCcccCCC-CCCccCCCCCCeeEEEEEEecCCceEEEEEECCCCCCCCcccc-------------CCCCCCCCceEE
Confidence 34667665432 33468999999997532 1357999999998765 789999999875
Q ss_pred EccC----------------------CCCC--ccCCCceeEEeE------------------------------------
Q 019908 201 ISER----------------------DKCP--QCKANKVTQEKK------------------------------------ 220 (334)
Q Consensus 201 ~~~~----------------------~~C~--~C~G~g~~~~~~------------------------------------ 220 (334)
.... .+.. .-.|.-++.-..
T Consensus 216 ~~~~~l~V~Ip~G~~~G~~i~l~G~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~v~tld 295 (380)
T PRK14276 216 KQAHTVSVKIPAGVETGQQIRLQGQGEAGFNGGPYGDLYVVFRVEPSKKFERDGSTIYYTLPISFVQAALGDTVEVPTVH 295 (380)
T ss_pred EEEEEEEEEeCCCccCCcEEEEeccccCCCCCCCCcCEEEEEEEEECcceeeecceEEEEEecCHHHHhCCCeEEEEcCC
Confidence 4200 0000 001111111110
Q ss_pred -EEEEEeccCccCCcEEEEecCcCCCCC-CCCcCEEEEEEEEeCCCceeecCcEEEE
Q 019908 221 -VLEVHVEKGMQHGQKIAFEGQADEAPD-TITGDIVFILQLKEHPKFKRKFDDLYVD 275 (334)
Q Consensus 221 -~~~v~Ip~G~~~G~~i~l~g~G~~~~~-~~~GDL~v~i~v~~~~~f~r~g~dL~~~ 275 (334)
.++|+||+|+++|++++|+|+|++..+ ..+|||||+|+|..|+.+..+...|+.+
T Consensus 296 g~i~v~ip~g~~~g~~~~i~g~G~p~~~~~~~GDL~V~~~v~~P~~l~~~q~~~l~~ 352 (380)
T PRK14276 296 GDVELKIPAGTQTGKKFRLRGKGAPKLRGGGNGDQHVTVNIVTPTKLNDAQKEALKA 352 (380)
T ss_pred CcEEEEECCCCCCCCEEEECCCCcCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHH
Confidence 578999999999999999999999753 4579999999999988777666555444
No 77
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=99.46 E-value=8.4e-14 Score=133.61 Aligned_cols=130 Identities=19% Similarity=0.397 Sum_probs=89.8
Q ss_pred eeecCcccccccceeeeCCCCCCCCCccC----------CcccCCCCCCCcEEEEEEeeccceeeEEEEeCCCCccceEE
Q 019908 131 DLYNGTTKKLSLSRNILCPKCKGKGSKSG----------ALGKCYGCQGTGMKITTRQIGLGMIQQMQHVCPECRGAGEV 200 (334)
Q Consensus 131 e~~~G~~~~i~~~~~~~C~~C~G~G~~~~----------~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~ 200 (334)
..|.|....- -.....|+.|+|+|.... ...+|+.|+|+|+.+. .+|+.|.|.|.+
T Consensus 147 ~~C~G~G~~~-~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~-------------~~C~~C~G~g~v 212 (354)
T TIGR02349 147 ETCHGTGAKP-GTDPKTCPTCGGTGQVRRQQGTPFGFFQQQQTCPTCGGEGKIIK-------------EPCSTCKGKGRV 212 (354)
T ss_pred CCCCCCCCCC-CCCCccCCCCCCeeEEEEEEeccCCceEEEEecCCCCCcceecC-------------CCCCCCCCCcEe
Confidence 3456655442 223567999999996431 1257999999998764 789999999875
Q ss_pred EccCC----------------------CCCc--cCCCceeEEe-------------------------------------
Q 019908 201 ISERD----------------------KCPQ--CKANKVTQEK------------------------------------- 219 (334)
Q Consensus 201 ~~~~~----------------------~C~~--C~G~g~~~~~------------------------------------- 219 (334)
..... .... =.|.-++.-.
T Consensus 213 ~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDl~v~i~v~~h~~f~r~g~DL~~~~~isl~eAl~G~~~~i~~ld 292 (354)
T TIGR02349 213 KERKTITVKIPAGVDTGQRLRVSGKGNAGENGGPNGDLYVVIRVKPHKIFERDGNDLYIEVPISFTQAILGGEIEVPTLD 292 (354)
T ss_pred cccceEEEEECCCCCCCCEEEEecCccCCCCCCCCCCEEEEEEEecCcceEEecCCEEEEEEeCHHHHhCCCeEEEecCC
Confidence 43110 0100 0011111100
Q ss_pred EEEEEEeccCccCCcEEEEecCcCCCCCC-CCcCEEEEEEEEeCCCceeecCcEEE
Q 019908 220 KVLEVHVEKGMQHGQKIAFEGQADEAPDT-ITGDIVFILQLKEHPKFKRKFDDLYV 274 (334)
Q Consensus 220 ~~~~v~Ip~G~~~G~~i~l~g~G~~~~~~-~~GDL~v~i~v~~~~~f~r~g~dL~~ 274 (334)
..++|.||+|+++|++++|+|+|++.+++ .+|||||+|+|..|+.|++++.+++.
T Consensus 293 G~i~v~ip~g~~~g~~~~i~g~G~p~~~~~~~GDL~i~~~v~~P~~l~~~~~~~l~ 348 (354)
T TIGR02349 293 GDVKLKIPAGTQSGTVFRLKGKGVPRLRGNGRGDLLVTVKVETPKNLSKEQKELLE 348 (354)
T ss_pred ceEEEEECCcccCCcEEEECCCCcCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHH
Confidence 15789999999999999999999986543 68999999999999988887766543
No 78
>PRK14280 chaperone protein DnaJ; Provisional
Probab=99.46 E-value=1.1e-13 Score=133.54 Aligned_cols=131 Identities=21% Similarity=0.411 Sum_probs=89.8
Q ss_pred eeecCcccccccceeeeCCCCCCCCCccC----------CcccCCCCCCCcEEEEEEeeccceeeEEEEeCCCCccceEE
Q 019908 131 DLYNGTTKKLSLSRNILCPKCKGKGSKSG----------ALGKCYGCQGTGMKITTRQIGLGMIQQMQHVCPECRGAGEV 200 (334)
Q Consensus 131 e~~~G~~~~i~~~~~~~C~~C~G~G~~~~----------~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~ 200 (334)
+.|.|....- -.....|+.|+|+|.... ...+|+.|+|+|+++. .+|+.|+|.|++
T Consensus 147 ~~C~G~G~~~-~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~-------------~~C~~C~G~g~v 212 (376)
T PRK14280 147 DTCHGSGAKP-GTSKETCSHCGGSGQVSVEQNTPFGRVVNRQTCPHCNGTGQEIK-------------EKCPTCHGKGKV 212 (376)
T ss_pred CCCCCcccCC-CCCCccCCCCCCEEEEEEEeecCCceEEEEEEcCCCCCCCceec-------------CCCCCCCCceEE
Confidence 3456665542 234567999999996431 2357999999998764 789999999875
Q ss_pred EccC----------------------CCCC--ccCCCceeEEeE------------------------------------
Q 019908 201 ISER----------------------DKCP--QCKANKVTQEKK------------------------------------ 220 (334)
Q Consensus 201 ~~~~----------------------~~C~--~C~G~g~~~~~~------------------------------------ 220 (334)
...+ .+.. .-.|.-++.-..
T Consensus 213 ~~~~~i~V~Ip~G~~~G~~i~l~G~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tld 292 (376)
T PRK14280 213 RKRKKINVKIPAGVDNGQQIRVSGEGEPGVNGGPAGDLYVVFRVRPHEFFERDGDDIYCEMPLTFAQAALGDEIEVPTLH 292 (376)
T ss_pred EEEEEEEEEeCCCCcCCcEEEEcccccCCCCCCCCcCEEEEEEEecCCCeEEecCCEEEEEecCHHHHhCCCEEEEecCC
Confidence 4210 0000 011111111111
Q ss_pred -EEEEEeccCccCCcEEEEecCcCCCC-CCCCcCEEEEEEEEeCCCceeecCcEEEE
Q 019908 221 -VLEVHVEKGMQHGQKIAFEGQADEAP-DTITGDIVFILQLKEHPKFKRKFDDLYVD 275 (334)
Q Consensus 221 -~~~v~Ip~G~~~G~~i~l~g~G~~~~-~~~~GDL~v~i~v~~~~~f~r~g~dL~~~ 275 (334)
.++|+||+|+++|++++|+|+|++.. +...|||||+|+|..|+.++.+...|+.+
T Consensus 293 g~i~v~ip~g~~~g~~~~i~g~G~p~~~~~~~GDL~v~~~v~~P~~Ls~~q~~~l~~ 349 (376)
T PRK14280 293 GKVKLKIPAGTQTGTQFRLKGKGVPNVRGYGQGDQYVVVRVVTPTKLTDRQKELLRE 349 (376)
T ss_pred ceEEEEECCCCCCCcEEEEcCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHH
Confidence 57899999999999999999999864 34679999999999888777666555444
No 79
>PRK05014 hscB co-chaperone HscB; Provisional
Probab=99.43 E-value=1.4e-13 Score=118.33 Aligned_cols=61 Identities=25% Similarity=0.459 Sum_probs=54.9
Q ss_pred cccccccCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCh---------HHHHHHHHHHhhcCCCcccchhcc
Q 019908 12 TKYYEILGVSKS--ATEDELKKAYRKAAMKNHPDKGGDP---------EKFKELGQAYEVLSDPEKRDIYDQ 72 (334)
Q Consensus 12 ~~~y~iLgv~~~--a~~~eik~ayr~la~~~hPd~~~~~---------~~f~~i~~Ay~~L~d~~~r~~YD~ 72 (334)
.|||++|||++. ++..+|+++||+++++||||+.++. +.|+.||+||++|+||.+|+.|+.
T Consensus 1 ~~yf~llgl~~~~~~d~~~L~~~yr~l~~~~HPDk~~~~~~~~~~~a~~~s~~iN~AY~~L~dp~~Ra~Yll 72 (171)
T PRK05014 1 MDYFTLFGLPARYDIDTQLLASRYQELQRQFHPDKFANASERERLLAVQQAATINDAYQTLKHPLKRAEYLL 72 (171)
T ss_pred CCHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHCChhHHHHHHH
Confidence 489999999996 6789999999999999999996532 478999999999999999999985
No 80
>PRK01356 hscB co-chaperone HscB; Provisional
Probab=99.42 E-value=1.3e-13 Score=117.96 Aligned_cols=61 Identities=33% Similarity=0.476 Sum_probs=55.5
Q ss_pred cccccccCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCh-------HHHHHHHHHHhhcCCCcccchhcc
Q 019908 12 TKYYEILGVSKS--ATEDELKKAYRKAAMKNHPDKGGDP-------EKFKELGQAYEVLSDPEKRDIYDQ 72 (334)
Q Consensus 12 ~~~y~iLgv~~~--a~~~eik~ayr~la~~~hPd~~~~~-------~~f~~i~~Ay~~L~d~~~r~~YD~ 72 (334)
.|||++|||++. ++..+|+++||+++++||||++.+. +.+..||+||++|+||.+|+.|+.
T Consensus 2 ~~yf~llgl~~~f~id~~~L~~aYr~lq~~~HPDk~~~~~~k~~~~~~s~~in~AY~~L~dp~~Ra~YlL 71 (166)
T PRK01356 2 QNYFQLLGLPQEYNIDLKILEKQYFAMQVKYHPDKAKTLQEKEQNLIIASELNNAYSTLKDALKRAEYML 71 (166)
T ss_pred CCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 589999999997 7899999999999999999998754 347899999999999999999985
No 81
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=99.42 E-value=3.1e-13 Score=131.71 Aligned_cols=132 Identities=17% Similarity=0.304 Sum_probs=89.0
Q ss_pred eeecCcccccccceeeeCCCCCCCCCccC----------CcccCCCCCCCcEEEEEEeeccceeeEEEEeCCCCccceEE
Q 019908 131 DLYNGTTKKLSLSRNILCPKCKGKGSKSG----------ALGKCYGCQGTGMKITTRQIGLGMIQQMQHVCPECRGAGEV 200 (334)
Q Consensus 131 e~~~G~~~~i~~~~~~~C~~C~G~G~~~~----------~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~ 200 (334)
..|.|....- .....|+.|+|+|.... ...+|+.|+|+|+++.. ..+|+.|+|.|++
T Consensus 154 ~~C~G~G~~~--~~~~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~~i~~-----------~~~C~~C~G~g~v 220 (421)
T PTZ00037 154 ANCEGHGGPK--DAFVDCKLCNGQGIRVQIRQMGSMIHQTQSTCNSCNGQGKIIPE-----------SKKCKNCSGKGVK 220 (421)
T ss_pred cccCCCCCCC--CCCccCCCCCCCCeEEEEEeecceeeEEEEeCCCCCCcceeccc-----------cccCCcCCCccee
Confidence 4567766542 24578999999996321 23579999999987641 2689999999876
Q ss_pred EccCC-----CCCccCCCce------------------eEEeE-------------------------------------
Q 019908 201 ISERD-----KCPQCKANKV------------------TQEKK------------------------------------- 220 (334)
Q Consensus 201 ~~~~~-----~C~~C~G~g~------------------~~~~~------------------------------------- 220 (334)
...+. +=-.-.|..+ +.-..
T Consensus 221 ~~~~~l~V~Ip~G~~dG~~I~~~G~Gd~~~~~~pGDLiv~I~~~ph~~F~R~G~DL~~~~~Isl~eAllG~~i~I~tLdG 300 (421)
T PTZ00037 221 KTRKILEVNIDKGVPNQHKITFHGEADEKPNEIPGNVVFILNEKPHDTFKREGGDLFITKKISLYEALTGFVFYITHLDG 300 (421)
T ss_pred eeeeEEEEeeCCCCCCCcEEEEecccCCCCCCCCCcEEEEEEecCCCCcEEeCCeEEEEEeCCHHHHhcCCEEEeeCCCC
Confidence 43100 0000011111 11000
Q ss_pred -EEEEEeccC--ccCCcEEEEecCcCCCCC--CCCcCEEEEEEEEeC--CCceeecCcEEEE
Q 019908 221 -VLEVHVEKG--MQHGQKIAFEGQADEAPD--TITGDIVFILQLKEH--PKFKRKFDDLYVD 275 (334)
Q Consensus 221 -~~~v~Ip~G--~~~G~~i~l~g~G~~~~~--~~~GDL~v~i~v~~~--~~f~r~g~dL~~~ 275 (334)
.++|+||+| +++|++++|+|+|++..+ +..|||||+|+|.-| ..++.+...|+.+
T Consensus 301 ~~l~I~ip~g~vt~pg~~~~I~geGmP~~~~~~~rGDL~V~~~V~~P~~~~Ls~~qk~ll~~ 362 (421)
T PTZ00037 301 RKLLVNTPPGEVVKPGDIKVINNEGMPTYKSPFKKGNLYVTFEVIFPVDRKFTNEEKEILKS 362 (421)
T ss_pred CeEEEEeCCCcccCCCcEEEeCCCCcccCCCCCCCCCEEEEEEEEcCCCCCCCHHHHHHHHH
Confidence 588999999 999999999999998643 357999999999988 7666665554433
No 82
>KOG0722 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.40 E-value=8.3e-14 Score=122.92 Aligned_cols=63 Identities=41% Similarity=0.776 Sum_probs=59.4
Q ss_pred ccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCh---HHHHHHHHHHhhcCCCcccchhccc
Q 019908 11 NTKYYEILGVSKSATEDELKKAYRKAAMKNHPDKGGDP---EKFKELGQAYEVLSDPEKRDIYDQY 73 (334)
Q Consensus 11 ~~~~y~iLgv~~~a~~~eik~ayr~la~~~hPd~~~~~---~~f~~i~~Ay~~L~d~~~r~~YD~~ 73 (334)
..|.|++|||+++|+.+||++|||+||++||||+++++ +.|..|.+||++|.|.+.|..||-+
T Consensus 32 ~enCYdVLgV~Rea~KseIakAYRqLARrhHPDr~r~~e~k~~F~~iAtayeilkd~e~rt~ydya 97 (329)
T KOG0722|consen 32 AENCYDVLGVAREANKSEIAKAYRQLARRHHPDRNRDPESKKLFVKIATAYEILKDNETRTQYDYA 97 (329)
T ss_pred chhHHHHhhhhhhccHHHHHHHHHHHHHHhCCcccCCchhhhhhhhhhcccccccchhhHHhHHHH
Confidence 46899999999999999999999999999999999876 6899999999999999999999964
No 83
>PF01556 CTDII: DnaJ C terminal domain; InterPro: IPR002939 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolizing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. Thus, DnaK and DnaJ may bind to one and the same polypeptide chain to form a ternary complex. The formation of a ternary complex may result in cis-interaction of the J-domain of DnaJ with the ATPase domain of DnaK. An unfolded polypeptide may enter the chaperone cycle by associating first either with ATP-liganded DnaK or with DnaJ. DnaK interacts with both the backbone and side chains of a peptide substrate; it thus shows binding polarity and admits only L-peptide segments. In contrast, DnaJ has been shown to bind both L- and D-peptides and is assumed to interact only with the side chains of the substrate. This domain consists of the C-terminal region of the DnaJ protein. The function of this domain is unknown. It is found associated with IPR001623 from INTERPRO and IPR001305 from INTERPRO. ; GO: 0051082 unfolded protein binding, 0006457 protein folding; PDB: 2Q2G_A 2QLD_A 3AGX_A 3AGZ_A 3AGY_A 3I38_J 3LZ8_B 2B26_B 1C3G_A 1XAO_B ....
Probab=99.40 E-value=5.9e-13 Score=100.61 Aligned_cols=61 Identities=31% Similarity=0.401 Sum_probs=46.9
Q ss_pred cEEEEEecCHHHHhCCCeEEEecCCCCeEEEEcCCCceecCCccc-----------CCCCCccEEEEEEEEEee
Q 019908 271 DLYVDHTLSLTEALCGFQFALTHLDGRQLLIKSNPGEIIKPGIYF-----------DNFTSVNLYLHEYCFLWL 333 (334)
Q Consensus 271 dL~~~~~I~l~~al~G~~~~i~tldG~~l~v~i~~g~~i~~g~~~-----------~~~~~GdL~v~~~V~~p~ 333 (334)
||+++++||++||++|++++|+|+||+.+.|++|++ +++|... .++.+|||||+|+|.||-
T Consensus 1 DL~~~~~I~l~~al~G~~i~i~~l~g~~~~i~ip~~--~~~g~~~~i~g~G~p~~~~~~~~GdL~v~~~V~~P~ 72 (81)
T PF01556_consen 1 DLYCTIPISLKEALLGGTISIPTLDGKTIKIKIPPG--TQPGQQLRIKGKGMPKPKGGGKRGDLIVKFEVEFPK 72 (81)
T ss_dssp EEEEEEEEEHHHHHH-EEEEEE-TTS-EEEEEETST---STT-EEEETTESEEESSSTTSBEEEEEEEEEE--S
T ss_pred CeEEEEEeCHHHHhCCCEEEEECCCCCEEEEeccCc--cCCCcEEeecCCCCCcCCCCCCcCCEEEEEEEECCC
Confidence 799999999999999999999999999899999876 4454432 234799999999999994
No 84
>PRK14292 chaperone protein DnaJ; Provisional
Probab=99.38 E-value=4.8e-13 Score=129.10 Aligned_cols=131 Identities=21% Similarity=0.393 Sum_probs=92.8
Q ss_pred eeecCcccccccceeeeCCCCCCCCCccCC----------cccCCCCCCCcEEEEEEeeccceeeEEEEeCCCCccceEE
Q 019908 131 DLYNGTTKKLSLSRNILCPKCKGKGSKSGA----------LGKCYGCQGTGMKITTRQIGLGMIQQMQHVCPECRGAGEV 200 (334)
Q Consensus 131 e~~~G~~~~i~~~~~~~C~~C~G~G~~~~~----------~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~ 200 (334)
+.|.|............|+.|+|+|..... ..+|+.|+|+|..+. .+|+.|.|.|++
T Consensus 143 ~~C~G~G~~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~-------------~~C~~C~G~g~v 209 (371)
T PRK14292 143 EHCHGSRTEPGGKPPKTCPTCRGAGAVRAQARTIFGVVETQQPCPTCRGEGQIIT-------------DPCTVCRGRGRT 209 (371)
T ss_pred CCCcccccCCCCCCCccCCCCCCccEEEEEEeccCceEEEeeecCCCcccceecC-------------CCCCCCCCceEE
Confidence 456777665444446789999999975421 257999999998754 889999999876
Q ss_pred EccCCCCC------c-------cC----------CCceeEEeE-------------------------------------
Q 019908 201 ISERDKCP------Q-------CK----------ANKVTQEKK------------------------------------- 220 (334)
Q Consensus 201 ~~~~~~C~------~-------C~----------G~g~~~~~~------------------------------------- 220 (334)
.... ... . -. |.-++.-..
T Consensus 210 ~~~~-~~~V~Ip~G~~~G~~i~~~G~G~~~~~~~GDL~v~i~v~~h~~f~r~g~dL~~~~~isl~eAl~G~~~~i~tldG 288 (371)
T PRK14292 210 LKAE-TVKVKLPRGIDEGYRIRVAGMGNEGPGGNGDLYVHIEMEPHPELRREQEHLIYEARIGFAKAALGGQITVPTLDG 288 (371)
T ss_pred eecc-eEEEEECCCCCCCcEEEEecCcCCCCCCCCCEEEEEEEecCCccccchhceeEEeccCHHHHhCCCeEEEECCCC
Confidence 4310 000 0 00 111111100
Q ss_pred EEEEEeccCccCCcEEEEecCcCCCC-CCCCcCEEEEEEEEeCCCceeecCcEEEE
Q 019908 221 VLEVHVEKGMQHGQKIAFEGQADEAP-DTITGDIVFILQLKEHPKFKRKFDDLYVD 275 (334)
Q Consensus 221 ~~~v~Ip~G~~~G~~i~l~g~G~~~~-~~~~GDL~v~i~v~~~~~f~r~g~dL~~~ 275 (334)
..+|+||+|+++|++++|+|+|++.+ +..+|||||+|+|+.|+.|+.+...|+.+
T Consensus 289 ~~~v~ip~g~~~g~~~~i~g~G~p~~~~~~~GDL~V~~~v~~P~~l~~~q~~ll~~ 344 (371)
T PRK14292 289 PQVIEVKPGTQHGDLHRLRGQGMPRLQGAGTGDLIVEYEIAVPKQLSPEAREALEA 344 (371)
T ss_pred CEEEecCCCcCCCcEEEECCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHH
Confidence 35799999999999999999999864 44579999999999999888877766653
No 85
>PRK03578 hscB co-chaperone HscB; Provisional
Probab=99.37 E-value=6.6e-13 Score=114.57 Aligned_cols=63 Identities=27% Similarity=0.426 Sum_probs=55.8
Q ss_pred CccccccccCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCh---------HHHHHHHHHHhhcCCCcccchhcc
Q 019908 10 NNTKYYEILGVSKS--ATEDELKKAYRKAAMKNHPDKGGDP---------EKFKELGQAYEVLSDPEKRDIYDQ 72 (334)
Q Consensus 10 ~~~~~y~iLgv~~~--a~~~eik~ayr~la~~~hPd~~~~~---------~~f~~i~~Ay~~L~d~~~r~~YD~ 72 (334)
...|||++|||++. ++..+|+++||+|+++||||+++.. +.++.||+||++|+||.+|+.|+.
T Consensus 4 ~~~dyf~llglp~~f~~d~~~L~~~yr~lq~~~HPD~~~~~~~~e~~~a~~~s~~iN~AY~tL~~p~~Ra~Yll 77 (176)
T PRK03578 4 LKDDHFSLFGLPARFALDEAALDAAYRTVQAQVHPDRFAAAGDAEKRVAMQWATRANEAYQTLRDPLKRARYLL 77 (176)
T ss_pred CCCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhCChhhHHHHHH
Confidence 34799999999996 5789999999999999999997632 346899999999999999999995
No 86
>PRK00294 hscB co-chaperone HscB; Provisional
Probab=99.36 E-value=7.9e-13 Score=113.63 Aligned_cols=63 Identities=29% Similarity=0.469 Sum_probs=56.9
Q ss_pred CccccccccCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCh---------HHHHHHHHHHhhcCCCcccchhcc
Q 019908 10 NNTKYYEILGVSKS--ATEDELKKAYRKAAMKNHPDKGGDP---------EKFKELGQAYEVLSDPEKRDIYDQ 72 (334)
Q Consensus 10 ~~~~~y~iLgv~~~--a~~~eik~ayr~la~~~hPd~~~~~---------~~f~~i~~Ay~~L~d~~~r~~YD~ 72 (334)
...|||++||+++. .+..+|+++||+|+++||||++.+. +.|..||+||++|+||.+|+.|+.
T Consensus 2 ~~~~~F~l~~l~~~f~id~~~L~~~Yr~Lq~~~HPDk~~~~~~~e~~~a~~~s~~IN~AY~~L~~p~~Ra~YlL 75 (173)
T PRK00294 2 GTPCHFALFDLQPSFRLDLDQLATRYRELAREVHPDRFADAPEREQRLALERSASLNEAYQTLKSPPRRARYLL 75 (173)
T ss_pred CCCChhhhcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhCChhhhHHHHH
Confidence 56899999999997 5679999999999999999997532 479999999999999999999995
No 87
>PHA02624 large T antigen; Provisional
Probab=99.33 E-value=6.6e-13 Score=132.11 Aligned_cols=63 Identities=33% Similarity=0.550 Sum_probs=59.7
Q ss_pred CCCccccccccCCCCCC--CHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHhhcCCCcccchh
Q 019908 8 RSNNTKYYEILGVSKSA--TEDELKKAYRKAAMKNHPDKGGDPEKFKELGQAYEVLSDPEKRDIY 70 (334)
Q Consensus 8 ~~~~~~~y~iLgv~~~a--~~~eik~ayr~la~~~hPd~~~~~~~f~~i~~Ay~~L~d~~~r~~Y 70 (334)
..+.+++|++|||+++| +.+|||+|||++|++||||+++++++|++|++||++|+|+.+|..|
T Consensus 7 ree~~elyelLGL~~~A~gs~~eIKkAYRkLAkkyHPDKgGdeekfk~Ln~AYevL~d~~k~~r~ 71 (647)
T PHA02624 7 REESKELMDLLGLPMAAWGNLPLMRKAYLRKCKEYHPDKGGDEEKMKRLNSLYKKLQEGVKSARQ 71 (647)
T ss_pred hHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCcHHHHHHHHHHHHHHhcHHHhhhc
Confidence 34567999999999999 9999999999999999999999999999999999999999999998
No 88
>PRK14283 chaperone protein DnaJ; Provisional
Probab=99.33 E-value=3.2e-12 Score=123.65 Aligned_cols=131 Identities=21% Similarity=0.383 Sum_probs=88.9
Q ss_pred eeecCcccccccceeeeCCCCCCCCCccC----------CcccCCCCCCCcEEEEEEeeccceeeEEEEeCCCCccceEE
Q 019908 131 DLYNGTTKKLSLSRNILCPKCKGKGSKSG----------ALGKCYGCQGTGMKITTRQIGLGMIQQMQHVCPECRGAGEV 200 (334)
Q Consensus 131 e~~~G~~~~i~~~~~~~C~~C~G~G~~~~----------~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~ 200 (334)
+.|.|....- -.....|+.|+|+|.... ...+|+.|+|+|+.+. .+|..|+|.|.+
T Consensus 150 ~~C~G~G~~~-~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~-------------~~C~~C~G~g~v 215 (378)
T PRK14283 150 PVCNGSRAEP-GSEVKTCPTCGGTGQVKQVRNTILGQMMNVTTCPDCQGEGKIVE-------------KPCSNCHGKGVV 215 (378)
T ss_pred CCCCccccCC-CCCCccCCCcCCccEEEEEEeccCceEEEEEECCCCCccceecC-------------CCCCCCCCceee
Confidence 3466765542 223467999999997531 1257999999998764 789999999875
Q ss_pred EccCC----------------------CCC--ccCCCceeEEeE------------------------------------
Q 019908 201 ISERD----------------------KCP--QCKANKVTQEKK------------------------------------ 220 (334)
Q Consensus 201 ~~~~~----------------------~C~--~C~G~g~~~~~~------------------------------------ 220 (334)
..... +.. .=.|.-++.-..
T Consensus 216 ~~~~~l~V~IppG~~~G~~i~l~g~G~~~~~~~~~GDLiv~i~v~~~~~f~r~G~DL~~~~~Isl~eAl~G~~~~i~tld 295 (378)
T PRK14283 216 RETKTISVKIPAGVETGSRLRVSGEGEMGDRGGEPGDLYVVIKVKPHKIFRREGANLYYEKPISFVQAALGDTVDVPTID 295 (378)
T ss_pred ccceeEEEEECCCCCCCcEEEEeccccCCCCCCCCccEEEEEEEEcCCCEEEecCCEEEEEecCHHHHhcCCeEEEEcCC
Confidence 43100 000 001111111000
Q ss_pred -EEEEEeccCccCCcEEEEecCcCCCC-CCCCcCEEEEEEEEeCCCceeecCcEEEE
Q 019908 221 -VLEVHVEKGMQHGQKIAFEGQADEAP-DTITGDIVFILQLKEHPKFKRKFDDLYVD 275 (334)
Q Consensus 221 -~~~v~Ip~G~~~G~~i~l~g~G~~~~-~~~~GDL~v~i~v~~~~~f~r~g~dL~~~ 275 (334)
.++|.||+|+++|++++|+|+|++.. +...|||||+|+|.-|+.++.+...|+.+
T Consensus 296 G~i~v~ip~g~~~g~~~ri~g~G~p~~~~~~~GdL~v~~~v~~P~~l~~~q~~ll~~ 352 (378)
T PRK14283 296 GPVELKIPAGTQSGTTFRLKGHGMPSLRWSGKGNLYVKVKVVVPKKLSPKQKELLRE 352 (378)
T ss_pred ceEEEEeCCCCCCCCEEEECCCCCCCCCCCCCCCEEEEEEEEeCCCCCHHHHHHHHH
Confidence 57899999999999999999999864 34679999999999887776666555544
No 89
>KOG0720 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.31 E-value=9.9e-13 Score=125.04 Aligned_cols=67 Identities=45% Similarity=0.661 Sum_probs=62.6
Q ss_pred CCCCCccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCh---HHHHHHHHHHhhcCCCcccchhcc
Q 019908 6 PRRSNNTKYYEILGVSKSATEDELKKAYRKAAMKNHPDKGGDP---EKFKELGQAYEVLSDPEKRDIYDQ 72 (334)
Q Consensus 6 ~~~~~~~~~y~iLgv~~~a~~~eik~ayr~la~~~hPd~~~~~---~~f~~i~~Ay~~L~d~~~r~~YD~ 72 (334)
.+..+.+|.|.+|||++++|+++||+.||++|...|||||..+ |.|+.+..|||+|+|+++|+.||.
T Consensus 229 ~re~~~~daYsvlGl~~d~sd~~lKk~Yrk~A~LVhPDKn~~~~A~Eafk~Lq~Afevig~~~kR~eYd~ 298 (490)
T KOG0720|consen 229 SRELNILDAYSALGLPSDCSDADLKKNYRKKAMLVHPDKNMIPRAEEAFKKLQVAFEVIGDSVKRKEYDL 298 (490)
T ss_pred hhhhcCCCchhhcCCCCCCCHHHHHHHHHhhceEeCCCccCChhHHHHHHHHHHHHHHhcchhhhhHHHH
Confidence 3455689999999999999999999999999999999999765 899999999999999999999997
No 90
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=99.22 E-value=8.6e-12 Score=114.85 Aligned_cols=56 Identities=39% Similarity=0.612 Sum_probs=49.8
Q ss_pred CCCccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-----------hHHHHHHHHHHhhcCC
Q 019908 8 RSNNTKYYEILGVSKSATEDELKKAYRKAAMKNHPDKGGD-----------PEKFKELGQAYEVLSD 63 (334)
Q Consensus 8 ~~~~~~~y~iLgv~~~a~~~eik~ayr~la~~~hPd~~~~-----------~~~f~~i~~Ay~~L~d 63 (334)
..+..++|++|||+++||.+|||+|||+|+++||||++.+ .++|++|++||++|+.
T Consensus 196 ~~~~~~ay~vLgv~~~as~~eIk~aYr~L~~~~HPDk~~~~g~~~~~~~~a~ek~~~I~~AYe~L~~ 262 (267)
T PRK09430 196 GPTLEDAYKVLGVSESDDDQEIKRAYRKLMSEHHPDKLVAKGLPPEMMEMAKEKAQEIQAAYELIKK 262 (267)
T ss_pred CCcHHhHHHHcCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHH
Confidence 3466899999999999999999999999999999999632 1799999999999974
No 91
>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]
Probab=99.06 E-value=7.3e-11 Score=111.94 Aligned_cols=68 Identities=40% Similarity=0.706 Sum_probs=62.0
Q ss_pred CccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---h------HHHHHHHHHHhhcCCCcccchhcccChhh
Q 019908 10 NNTKYYEILGVSKSATEDELKKAYRKAAMKNHPDKGGD---P------EKFKELGQAYEVLSDPEKRDIYDQYGEDA 77 (334)
Q Consensus 10 ~~~~~y~iLgv~~~a~~~eik~ayr~la~~~hPd~~~~---~------~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~ 77 (334)
.--|+|+|||++.+++..+||++||+|+.|||||+-+. . +++.+|++||+.|+|...|+.|-.||...
T Consensus 96 ~~fDPyEILGI~~~ts~rdik~~yr~Ls~KfhpdK~~~mvn~~rse~Ee~y~~ItkAY~~lTd~k~renyl~yGtPd 172 (610)
T COG5407 96 RGFDPYEILGIDQDTSERDIKKRYRMLSMKFHPDKAPPMVNELRSEYEEKYKTITKAYGLLTDKKRRENYLNYGTPD 172 (610)
T ss_pred cCCChHHhhcccCCCcHHHHHHHHHhheeecChhhcCCCChhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcCCCC
Confidence 34689999999999999999999999999999999764 1 78999999999999999999999998643
No 92
>PRK01773 hscB co-chaperone HscB; Provisional
Probab=98.89 E-value=1.8e-09 Score=92.92 Aligned_cols=61 Identities=20% Similarity=0.264 Sum_probs=54.1
Q ss_pred cccccccCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCh---------HHHHHHHHHHhhcCCCcccchhcc
Q 019908 12 TKYYEILGVSKS--ATEDELKKAYRKAAMKNHPDKGGDP---------EKFKELGQAYEVLSDPEKRDIYDQ 72 (334)
Q Consensus 12 ~~~y~iLgv~~~--a~~~eik~ayr~la~~~hPd~~~~~---------~~f~~i~~Ay~~L~d~~~r~~YD~ 72 (334)
.|||++||+++. .+..++++.||+|.+++|||+.... +.-..||+||.+|.||-+|+.|=-
T Consensus 2 ~nyF~lf~lp~~F~iD~~~L~~~y~~Lq~~~HPD~f~~~~~~eq~~a~~~ss~iN~AY~tLkdPl~RA~YLL 73 (173)
T PRK01773 2 NNPFALFDLPVDFQLDNALLSERYLALQKSLHPDNFANSSAQEQRLAMQKSAEVNDALQILKDPILRAEAII 73 (173)
T ss_pred CChHHhcCCCCCCCCCHHHHHHHHHHHHHHhCcCcccCCCHHHHHHHHHHHHHHHHHHHHHCChHHHHHHHH
Confidence 589999999986 7899999999999999999996432 457889999999999999998864
No 93
>PF01556 CTDII: DnaJ C terminal domain; InterPro: IPR002939 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolizing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. Thus, DnaK and DnaJ may bind to one and the same polypeptide chain to form a ternary complex. The formation of a ternary complex may result in cis-interaction of the J-domain of DnaJ with the ATPase domain of DnaK. An unfolded polypeptide may enter the chaperone cycle by associating first either with ATP-liganded DnaK or with DnaJ. DnaK interacts with both the backbone and side chains of a peptide substrate; it thus shows binding polarity and admits only L-peptide segments. In contrast, DnaJ has been shown to bind both L- and D-peptides and is assumed to interact only with the side chains of the substrate. This domain consists of the C-terminal region of the DnaJ protein. The function of this domain is unknown. It is found associated with IPR001623 from INTERPRO and IPR001305 from INTERPRO. ; GO: 0051082 unfolded protein binding, 0006457 protein folding; PDB: 2Q2G_A 2QLD_A 3AGX_A 3AGZ_A 3AGY_A 3I38_J 3LZ8_B 2B26_B 1C3G_A 1XAO_B ....
Probab=98.89 E-value=6.2e-10 Score=84.06 Aligned_cols=50 Identities=20% Similarity=0.430 Sum_probs=38.5
Q ss_pred EEEEEEeccCccCCcEEEEecCcCCCCC--CCCcCEEEEEEEEeCCCceeec
Q 019908 220 KVLEVHVEKGMQHGQKIAFEGQADEAPD--TITGDIVFILQLKEHPKFKRKF 269 (334)
Q Consensus 220 ~~~~v~Ip~G~~~G~~i~l~g~G~~~~~--~~~GDL~v~i~v~~~~~f~r~g 269 (334)
+.++|+||+|+++|+.++|+|+|++... +..|||+|+|+|.-|..++.+.
T Consensus 27 ~~~~i~ip~~~~~g~~~~i~g~G~p~~~~~~~~GdL~v~~~V~~P~~ls~~q 78 (81)
T PF01556_consen 27 KTIKIKIPPGTQPGQQLRIKGKGMPKPKGGGKRGDLIVKFEVEFPKKLSPEQ 78 (81)
T ss_dssp -EEEEEETST-STT-EEEETTESEEESSSTTSBEEEEEEEEEE--SSTSHHH
T ss_pred CEEEEeccCccCCCcEEeecCCCCCcCCCCCCcCCEEEEEEEECCCCCCHHH
Confidence 4688999999999999999999997533 3699999999999888776543
No 94
>PLN03165 chaperone protein dnaJ-related; Provisional
Probab=98.88 E-value=5.3e-09 Score=82.79 Aligned_cols=62 Identities=26% Similarity=0.604 Sum_probs=50.0
Q ss_pred eeeeCCCCCCCCCccCCcccCCCCCCCcEEEEEEeeccceeeEEEEeCCCCccceEEEccCCCCCccCCCceeEEe
Q 019908 144 RNILCPKCKGKGSKSGALGKCYGCQGTGMKITTRQIGLGMIQQMQHVCPECRGAGEVISERDKCPQCKANKVTQEK 219 (334)
Q Consensus 144 ~~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~~ 219 (334)
..+.|..|+|+|.. +|+.|+|+|.+.... ++ .++.+.+|+.|+|+|++ .|+.|+|++++..-
T Consensus 40 ~~v~C~~C~GsG~~-----~C~~C~G~G~v~~~~--~g--~~q~~~~C~~C~G~Gk~-----~C~~C~G~G~~~~~ 101 (111)
T PLN03165 40 NTQPCFPCSGTGAQ-----VCRFCVGSGNVTVEL--GG--GEKEVSKCINCDGAGSL-----TCTTCQGSGIQPRY 101 (111)
T ss_pred cCCCCCCCCCCCCc-----CCCCCcCcCeEEEEe--CC--cEEEEEECCCCCCccee-----eCCCCCCCEEEeee
Confidence 34689999999983 899999999887533 32 34567999999999974 49999999987653
No 95
>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB. This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock.
Probab=98.86 E-value=2.8e-09 Score=90.48 Aligned_cols=49 Identities=31% Similarity=0.409 Sum_probs=43.8
Q ss_pred CCHHHHHHHHHHHHHHhCCCCCCCh---------HHHHHHHHHHhhcCCCcccchhcc
Q 019908 24 ATEDELKKAYRKAAMKNHPDKGGDP---------EKFKELGQAYEVLSDPEKRDIYDQ 72 (334)
Q Consensus 24 a~~~eik~ayr~la~~~hPd~~~~~---------~~f~~i~~Ay~~L~d~~~r~~YD~ 72 (334)
.+..+|+++||+|+++||||+.+.. +.|+.||+||++|+||.+|+.|+.
T Consensus 3 iD~~~L~~~yr~lq~~~HPD~~~~~~~~~~~~a~~~s~~iN~AY~~L~~p~~Ra~ylL 60 (157)
T TIGR00714 3 LDTQALSLRYQDLQRQYHPDKFASGSAQEQLAAVQQSTTLNQAYQTLKDPLMRAEYML 60 (157)
T ss_pred CCHHHHHHHHHHHHHHHCcCCCCCCChhhhHHHHHHHHHHHHHHHHhCChhhhHHHHH
Confidence 4778999999999999999985421 679999999999999999999996
No 96
>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]
Probab=98.78 E-value=2.9e-09 Score=95.19 Aligned_cols=70 Identities=36% Similarity=0.445 Sum_probs=62.2
Q ss_pred CCCCCCccccccccCCCC---CCCHHHHHHHHHHHHHHhCCCCCC------ChHHHHHHHHHHhhcCCCcccchhcccC
Q 019908 5 TPRRSNNTKYYEILGVSK---SATEDELKKAYRKAAMKNHPDKGG------DPEKFKELGQAYEVLSDPEKRDIYDQYG 74 (334)
Q Consensus 5 ~~~~~~~~~~y~iLgv~~---~a~~~eik~ayr~la~~~hPd~~~------~~~~f~~i~~Ay~~L~d~~~r~~YD~~G 74 (334)
+++.|...|+|.+|||+. .|++.+|.+|.++...+||||+.. ..+-|+.|+.||++|+|+.+|..||..-
T Consensus 36 d~k~Wk~~DlYa~lgLskyR~ka~~~qi~kah~kkv~kyHPDk~aa~g~~~~d~fFk~iqkA~evL~D~~~R~qyDS~d 114 (379)
T COG5269 36 DFKNWKKVDLYALLGLSKYRTKAIPPQILKAHKKKVYKYHPDKTAAGGNKGCDEFFKLIQKAREVLGDRKLRLQYDSND 114 (379)
T ss_pred hhhhhhhhhHHHHhchHhhhcCCCcHHHHHHHHHHHHHhCccchhccCCCCcHHHHHHHHHHHHHhccHHHHhhccccc
Confidence 456788899999999986 678899999999999999999972 2389999999999999999999999844
No 97
>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.74 E-value=5.7e-09 Score=89.39 Aligned_cols=61 Identities=31% Similarity=0.550 Sum_probs=55.5
Q ss_pred CccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCh-----HHHHHHHHHHhhcCCCcccchh
Q 019908 10 NNTKYYEILGVSKSATEDELKKAYRKAAMKNHPDKGGDP-----EKFKELGQAYEVLSDPEKRDIY 70 (334)
Q Consensus 10 ~~~~~y~iLgv~~~a~~~eik~ayr~la~~~hPd~~~~~-----~~f~~i~~Ay~~L~d~~~r~~Y 70 (334)
-+.|+|++|.|.|..+.++||+.||+|++..|||+|+|. ..|.-+..||..|-|+..|..-
T Consensus 51 fnLNpfeVLqIdpev~~edikkryRklSilVHPDKN~Dd~~rAqkAFdivkKA~k~l~n~~~rkr~ 116 (250)
T KOG1150|consen 51 FNLNPFEVLQIDPEVTDEDIKKRYRKLSILVHPDKNPDDAERAQKAFDIVKKAYKLLENDKIRKRC 116 (250)
T ss_pred cccChHHHHhcCCCCCHHHHHHHHHhhheeecCCCCcccHHHHHHHHHHHHHHHHHHhCHHHHHHH
Confidence 578999999999999999999999999999999999986 5799999999999998755543
No 98
>PRK14299 chaperone protein DnaJ; Provisional
Probab=98.73 E-value=7.5e-09 Score=96.78 Aligned_cols=55 Identities=18% Similarity=0.221 Sum_probs=48.3
Q ss_pred EEEEEeccCccCCcEEEEecCcCCCCCCCCcCEEEEEEEEeCCCceeecCcEEEE
Q 019908 221 VLEVHVEKGMQHGQKIAFEGQADEAPDTITGDIVFILQLKEHPKFKRKFDDLYVD 275 (334)
Q Consensus 221 ~~~v~Ip~G~~~G~~i~l~g~G~~~~~~~~GDL~v~i~v~~~~~f~r~g~dL~~~ 275 (334)
.++|+||+++++|++++|+|+|++..++..|||+|+|+|..|+.++.++.+|+.+
T Consensus 228 ~~~v~ip~~~~~g~~~rl~g~G~p~~~~~~GDL~v~~~V~~P~~l~~~~~~~l~~ 282 (291)
T PRK14299 228 PVEVTIPPRTQAGRKLRLKGKGWPRGPAGRGDQYAEVRITIPTRPTPEEERLYKQ 282 (291)
T ss_pred CEEEEeCCCcCCCCEEEECCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHH
Confidence 3789999999999999999999986555689999999999999999888776544
No 99
>KOG0723 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.70 E-value=2.4e-08 Score=77.05 Aligned_cols=62 Identities=31% Similarity=0.514 Sum_probs=55.1
Q ss_pred CCCCCCCCccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHhhcCCC
Q 019908 3 GRTPRRSNNTKYYEILGVSKSATEDELKKAYRKAAMKNHPDKGGDPEKFKELGQAYEVLSDP 64 (334)
Q Consensus 3 ~~~~~~~~~~~~y~iLgv~~~a~~~eik~ayr~la~~~hPd~~~~~~~f~~i~~Ay~~L~d~ 64 (334)
+.++..+..+..-.||||+++++.+.||+|+|++....|||+.++|-.-.+||||+++|...
T Consensus 47 GGF~~kMsr~EA~lIL~v~~s~~k~KikeaHrriM~~NHPD~GGSPYlAsKINEAKdlLe~~ 108 (112)
T KOG0723|consen 47 GGFEPKMSRREAALILGVTPSLDKDKIKEAHRRIMLANHPDRGGSPYLASKINEAKDLLEGT 108 (112)
T ss_pred cccccccchHHHHHHhCCCccccHHHHHHHHHHHHHcCCCcCCCCHHHHHHHHHHHHHHhcc
Confidence 34445667777888999999999999999999999999999999999999999999999754
No 100
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.58 E-value=1.7e-07 Score=87.90 Aligned_cols=43 Identities=19% Similarity=0.299 Sum_probs=39.3
Q ss_pred EEEEEeccC--ccCCcEEEEecCcCCCCCCCCcCEEEEEEEEeCC
Q 019908 221 VLEVHVEKG--MQHGQKIAFEGQADEAPDTITGDIVFILQLKEHP 263 (334)
Q Consensus 221 ~~~v~Ip~G--~~~G~~i~l~g~G~~~~~~~~GDL~v~i~v~~~~ 263 (334)
.+++.++|| +.+|++++++|+|++......|||||.++|+-++
T Consensus 280 ~l~~~~~pg~vi~~~~~~~v~~~gmp~~~~~~g~lyi~~~v~fp~ 324 (337)
T KOG0712|consen 280 LLKLSSKPGEVISPGDTKRVEGEGMPIFRNPKGDLYIKFEVKFPK 324 (337)
T ss_pred eEEEecCCCceeChhHEEeecCCCcccccCCCCcEEEEEEEEcCC
Confidence 788999999 9999999999999997655599999999999776
No 101
>PRK10266 curved DNA-binding protein CbpA; Provisional
Probab=98.51 E-value=8.2e-08 Score=90.43 Aligned_cols=53 Identities=25% Similarity=0.389 Sum_probs=45.1
Q ss_pred EEEEEeccCccCCcEEEEecCcCCCCCCCCcCEEEEEEEEeCCCceeecCcEEE
Q 019908 221 VLEVHVEKGMQHGQKIAFEGQADEAPDTITGDIVFILQLKEHPKFKRKFDDLYV 274 (334)
Q Consensus 221 ~~~v~Ip~G~~~G~~i~l~g~G~~~~~~~~GDL~v~i~v~~~~~f~r~g~dL~~ 274 (334)
.++|+||+|+++|++++|+|+|++.++ ..|||||+|+|..|+.+.-+...|+.
T Consensus 236 ~v~v~ip~g~~~g~~~ri~g~G~p~~~-~~GdL~v~~~v~~P~~l~~~q~~l~~ 288 (306)
T PRK10266 236 SILLTIPPGSQAGQRLRVKGKGLVSKK-QTGDLYAVLKIVMPPKPDEKTAALWQ 288 (306)
T ss_pred cEEEEeCCCcCCCCEEEECCCCCCCCC-CCCCEEEEEEEECCCCCCHHHHHHHH
Confidence 389999999999999999999998654 57999999999999887766555443
No 102
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=98.50 E-value=1.1e-07 Score=98.32 Aligned_cols=58 Identities=34% Similarity=0.523 Sum_probs=50.5
Q ss_pred CCCCCCccccccccCCCCCC----CHHHHHHHHHHHHHHhCCCCCCCh-HHHHHHHHHHhhcC
Q 019908 5 TPRRSNNTKYYEILGVSKSA----TEDELKKAYRKAAMKNHPDKGGDP-EKFKELGQAYEVLS 62 (334)
Q Consensus 5 ~~~~~~~~~~y~iLgv~~~a----~~~eik~ayr~la~~~hPd~~~~~-~~f~~i~~Ay~~L~ 62 (334)
-|-++...+.|+||.|+-+- +.+.||++|++||.+|||||||.. ++|.++|+|||.|+
T Consensus 1274 KP~~mS~d~A~eiL~i~l~n~~hD~~~KirrqY~kLA~kYHPDKNPEGRemFe~VnKAYE~L~ 1336 (2235)
T KOG1789|consen 1274 KPATMSVDLAREILSVDLTNEEHDKPAKIRRQYYKLAAKYHPDKNPEGREMFERVNKAYELLS 1336 (2235)
T ss_pred CCCccchHHHHHHhccccCCCCcccHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHH
Confidence 35567788999999998543 347899999999999999999976 99999999999998
No 103
>TIGR02642 phage_xxxx uncharacterized phage protein. This uncharacterized protein is found in prophage regions of Shewanella oneidensis MR-1, Vibrio vulnificus YJ016, Yersinia pseudotuberculosis IP 32953, and Aeromonas hydrophila ATCC7966. It appears to have regions of sequence similarity to phage lambda antitermination protein Q.
Probab=98.36 E-value=5.1e-07 Score=78.14 Aligned_cols=50 Identities=22% Similarity=0.508 Sum_probs=41.3
Q ss_pred EeCCCCccceEEEccCCCCCccCCCceeEEeEEEEEEeccCccCCcEEEEe
Q 019908 189 HVCPECRGAGEVISERDKCPQCKANKVTQEKKVLEVHVEKGMQHGQKIAFE 239 (334)
Q Consensus 189 ~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~~~~~~v~Ip~G~~~G~~i~l~ 239 (334)
.+|+.|+|+|+++....+|+.|+|.|.+..+..+.+++ .|+.+|++|++.
T Consensus 100 ~~C~~C~G~G~~i~~~~~C~~C~G~G~v~~~~~~~~k~-~g~~~g~~it~~ 149 (186)
T TIGR02642 100 CKCPRCRGTGLIQRRQRECDTCAGTGRFRPTVEDLLKS-FGVDSGAAIVLK 149 (186)
T ss_pred CcCCCCCCeeEEecCCCCCCCCCCccEEeeeEEEEEEe-eeccCCceeeHH
Confidence 56777777777665557888888888899999999999 999999999875
No 104
>KOG0568 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.34 E-value=3.6e-07 Score=80.17 Aligned_cols=53 Identities=32% Similarity=0.674 Sum_probs=47.9
Q ss_pred ccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---hHHHHHHHHHHh-hcCC
Q 019908 11 NTKYYEILGVSKSATEDELKKAYRKAAMKNHPDKGGD---PEKFKELGQAYE-VLSD 63 (334)
Q Consensus 11 ~~~~y~iLgv~~~a~~~eik~ayr~la~~~hPd~~~~---~~~f~~i~~Ay~-~L~d 63 (334)
-+.||.+|||..+|+..|++.||..||+++|||...+ .+.|.+|.+||. ||+.
T Consensus 46 ~~e~fril~v~e~~~adevr~af~~lakq~hpdsgs~~adaa~f~qideafrkvlq~ 102 (342)
T KOG0568|consen 46 IMECFRILGVEEGADADEVREAFHDLAKQVHPDSGSEEADAARFIQIDEAFRKVLQE 102 (342)
T ss_pred HHHHHHHhcccccCchhHHHHHHHHHHHHcCCCCCCccccHHHHHHHHHHHHHHHHH
Confidence 3579999999999999999999999999999998764 389999999998 7763
No 105
>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]
Probab=98.20 E-value=6.4e-07 Score=88.07 Aligned_cols=72 Identities=31% Similarity=0.678 Sum_probs=44.5
Q ss_pred eeCCCCCCCCCccCCcccCCCCCCCcEEEEEEe--------eccceeeEEEEeCCCCccceEEEccCCCCCccCCCceeE
Q 019908 146 ILCPKCKGKGSKSGALGKCYGCQGTGMKITTRQ--------IGLGMIQQMQHVCPECRGAGEVISERDKCPQCKANKVTQ 217 (334)
Q Consensus 146 ~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~--------~~~g~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~ 217 (334)
..|+.|+|+|........|+.|+|+|+.-.... .+.-++.+...+|+.|+|+|.+.- -..|+.|.|.|.+.
T Consensus 3 ~~C~~C~g~G~i~v~~e~c~vc~gtG~~~~~d~k~~~~~~~~~~D~~~~~~~pc~~c~gkG~V~v-~~~c~~c~G~gkv~ 81 (715)
T COG1107 3 KKCPECGGKGKIVVGEEECPVCHGTGFSDDFDPKGVANLSRETVDLFASFEIPCPKCRGKGTVTV-YDTCPECGGTGKVL 81 (715)
T ss_pred ccccccCCCceEeeeeeecccccccccccccChhhhhhhhhccccccccCCCCCCeeccceeEEE-EeecccCCCceeEE
Confidence 357788887777666667888888777622211 111233334457777777776553 46777777776655
Q ss_pred E
Q 019908 218 E 218 (334)
Q Consensus 218 ~ 218 (334)
.
T Consensus 82 ~ 82 (715)
T COG1107 82 T 82 (715)
T ss_pred e
Confidence 4
No 106
>PF00684 DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR001305 The hsp70 chaperone machine performs many diverse roles in the cell, including folding of nascent proteins, translocation of polypeptides across organelle membranes, coordinating responses to stress, and targeting selected proteins for degradation. DnaJ is a member of the hsp40 family of molecular chaperones, which is also called the J-protein family, the members of which regulate the activity of hsp70s. DnaJ (hsp40) binds to DnaK (hsp70) and stimulates its ATPase activity, generating the ADP-bound state of DnaK, which interacts stably with the polypeptide substrate []. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. DnaJ consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acid residues, a glycine and phenylalanine-rich domain ('G/F' domain), a central cysteine rich domain (CR-type zinc finger) containing four repeats of a CXXCXGXG motif which can coordinate two zinc atom and a C-terminal domain (CTD) []. This entry represents the central cysteine-rich (CR) domain of DnaJ proteins. This central cysteine rich domain (CR-type zinc finger) has an overall V-shaped extended beta-hairpin topology and contains four repeats of the motif CXXCXGXG where X is any amino acid. The isolated cysteine rich domain folds in zinc dependent fashion. Each set of two repeats binds one unit of zinc. Although this domain has been implicated in substrate binding, no evidence of specific interaction between the isolated DnaJ cysteine rich domain and various hydrophobic peptides has been found [].; GO: 0031072 heat shock protein binding, 0051082 unfolded protein binding; PDB: 1NLT_A 2CTT_A 1EXK_A.
Probab=98.19 E-value=5.8e-07 Score=65.04 Aligned_cols=52 Identities=37% Similarity=0.786 Sum_probs=34.0
Q ss_pred ecCcccccccceeeeCCCCCCCCCccCC----------cccCCCCCCCcEEE-EEEeeccceeeEEEEeCCCCccce
Q 019908 133 YNGTTKKLSLSRNILCPKCKGKGSKSGA----------LGKCYGCQGTGMKI-TTRQIGLGMIQQMQHVCPECRGAG 198 (334)
Q Consensus 133 ~~G~~~~i~~~~~~~C~~C~G~G~~~~~----------~~~C~~C~G~G~~~-~~~~~~~g~~~~~~~~C~~C~G~G 198 (334)
+.|.... .-....+|+.|+|+|.+... ..+|+.|+|+|+++ . .+|+.|+|.|
T Consensus 4 C~G~G~~-~~~~~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~G~~i~~-------------~~C~~C~G~g 66 (66)
T PF00684_consen 4 CNGTGAK-PGKKPKTCPQCNGSGQVTRRQQTPGGVFQMQQTCPKCGGTGKIIEK-------------DPCKTCKGSG 66 (66)
T ss_dssp CTTTSB--STTT-EE-TTSSSSSEEEEEEESSSTTEEEEEE-TTTSSSSEE-TS-------------SB-SSSTTSS
T ss_pred CCCcccC-CCCCCcCCcCCCCeeEEEEEEeCCCeEEEEEEECCCCcceeeEECC-------------CCCCCCCCcC
Confidence 4455443 22345689999999986431 25799999999987 4 8999999986
No 107
>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.
Probab=98.05 E-value=5.6e-06 Score=84.42 Aligned_cols=85 Identities=45% Similarity=0.807 Sum_probs=70.7
Q ss_pred cccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCh---HHHHHHHHHHhhcCCCcccchhcccChhhhhcCCCCCCCC
Q 019908 12 TKYYEILGVSKSATEDELKKAYRKAAMKNHPDKGGDP---EKFKELGQAYEVLSDPEKRDIYDQYGEDALKEGMGGAGAA 88 (334)
Q Consensus 12 ~~~y~iLgv~~~a~~~eik~ayr~la~~~hPd~~~~~---~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~~~~~~~~~~ 88 (334)
+|||++|||+++|+.++||+|||+||++||||+++++ ++|++|++||++|+|+.+|+.||+||..+.... .++
T Consensus 2 ~DYYeVLGVs~dAS~eEIKKAYRKLAKKyHPDKn~~~eAeekFqeINEAYEVLSDP~KRa~YD~fG~aG~d~e----~gf 77 (871)
T TIGR03835 2 RDYYEVLGIDRDADEQEIKKAFRKLAKKYHPDRNKAPDAASIFAEINEANDVLSNPKKRANYDKYGHDGVDRE----DDF 77 (871)
T ss_pred CChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhCCHHHHHHHhhhcccccccc----ccc
Confidence 6999999999999999999999999999999998754 689999999999999999999999998765421 111
Q ss_pred CCcchhhccccC
Q 019908 89 HNPFDIFESFFG 100 (334)
Q Consensus 89 ~~~~d~f~~~Fg 100 (334)
....++|.+||+
T Consensus 78 ~f~~DIF~sfFe 89 (871)
T TIGR03835 78 DFQADVFNSFFE 89 (871)
T ss_pred chhHHHHHHHhh
Confidence 111366777665
No 108
>KOG2813 consensus Predicted molecular chaperone, contains DnaJ domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.47 E-value=0.00014 Score=66.93 Aligned_cols=61 Identities=31% Similarity=0.780 Sum_probs=43.0
Q ss_pred eeeCCCCCCCCCcc---CCc-----------------ccCCCCCCCcEEEEEEeeccceeeEEEEeCCCCccceEEEccC
Q 019908 145 NILCPKCKGKGSKS---GAL-----------------GKCYGCQGTGMKITTRQIGLGMIQQMQHVCPECRGAGEVISER 204 (334)
Q Consensus 145 ~~~C~~C~G~G~~~---~~~-----------------~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~~ 204 (334)
.+.|+.|+|.|... ++. ..|..|+|+|. .+|+.|.|+|.
T Consensus 198 ~~vc~gc~g~G~~~y~~~~~m~c~sc~G~~~~k~gt~~~C~~C~G~G~----------------~~C~tC~grG~----- 256 (406)
T KOG2813|consen 198 AMVCHGCSGSGSNSYGIGTPMHCMSCTGVPPPKIGTHDLCYMCHGRGI----------------KECHTCKGRGK----- 256 (406)
T ss_pred ceeccCcCCCCccccccCcceecccccCCCCCCCCccchhhhccCCCc----------------ccCCcccCCCC-----
Confidence 45688888888422 112 34677777774 67888888885
Q ss_pred CCCCccCCCceeEEeEEEEEEe
Q 019908 205 DKCPQCKANKVTQEKKVLEVHV 226 (334)
Q Consensus 205 ~~C~~C~G~g~~~~~~~~~v~I 226 (334)
.+|.+|+|.|.......+.|.-
T Consensus 257 k~C~TC~gtgsll~~t~~vV~w 278 (406)
T KOG2813|consen 257 KPCTTCSGTGSLLNYTRIVVYW 278 (406)
T ss_pred cccccccCccceeeeEEEEEEe
Confidence 7899999988887776666654
No 109
>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]
Probab=97.40 E-value=0.00017 Score=71.46 Aligned_cols=56 Identities=32% Similarity=0.700 Sum_probs=39.2
Q ss_pred ecCcccccccceeeeCCCCCCCCCccCC-------------------cccCCCCCCCcEEEEEEeeccceeeEEEEeCCC
Q 019908 133 YNGTTKKLSLSRNILCPKCKGKGSKSGA-------------------LGKCYGCQGTGMKITTRQIGLGMIQQMQHVCPE 193 (334)
Q Consensus 133 ~~G~~~~i~~~~~~~C~~C~G~G~~~~~-------------------~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~ 193 (334)
|.|..+... ....|+.|+|+|....- ..+|+.|+|+|.+.. ..+|+.
T Consensus 8 C~g~G~i~v--~~e~c~vc~gtG~~~~~d~k~~~~~~~~~~D~~~~~~~pc~~c~gkG~V~v------------~~~c~~ 73 (715)
T COG1107 8 CGGKGKIVV--GEEECPVCHGTGFSDDFDPKGVANLSRETVDLFASFEIPCPKCRGKGTVTV------------YDTCPE 73 (715)
T ss_pred cCCCceEee--eeeecccccccccccccChhhhhhhhhccccccccCCCCCCeeccceeEEE------------Eeeccc
Confidence 555444422 23469999999975311 047999999998754 378999
Q ss_pred CccceEEEc
Q 019908 194 CRGAGEVIS 202 (334)
Q Consensus 194 C~G~G~~~~ 202 (334)
|.|+|++..
T Consensus 74 c~G~gkv~~ 82 (715)
T COG1107 74 CGGTGKVLT 82 (715)
T ss_pred CCCceeEEe
Confidence 999998754
No 110
>PLN03165 chaperone protein dnaJ-related; Provisional
Probab=97.40 E-value=0.00012 Score=58.17 Aligned_cols=49 Identities=31% Similarity=0.682 Sum_probs=37.0
Q ss_pred eeecCcccccccceeeeCCCCCCCCCccC-----C--cccCCCCCCCcEEEEEEeeccceeeEEEEeCCCCccceEEEc
Q 019908 131 DLYNGTTKKLSLSRNILCPKCKGKGSKSG-----A--LGKCYGCQGTGMKITTRQIGLGMIQQMQHVCPECRGAGEVIS 202 (334)
Q Consensus 131 e~~~G~~~~i~~~~~~~C~~C~G~G~~~~-----~--~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~ 202 (334)
..+.|... ..|+.|+|+|.... . ..+|+.|+|+|+ ..|+.|.|+|.+..
T Consensus 45 ~~C~GsG~-------~~C~~C~G~G~v~~~~~g~~q~~~~C~~C~G~Gk----------------~~C~~C~G~G~~~~ 100 (111)
T PLN03165 45 FPCSGTGA-------QVCRFCVGSGNVTVELGGGEKEVSKCINCDGAGS----------------LTCTTCQGSGIQPR 100 (111)
T ss_pred CCCCCCCC-------cCCCCCcCcCeEEEEeCCcEEEEEECCCCCCcce----------------eeCCCCCCCEEEee
Confidence 44566555 27999999997532 1 257999999996 45999999998764
No 111
>KOG2813 consensus Predicted molecular chaperone, contains DnaJ domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.92 E-value=0.00043 Score=63.79 Aligned_cols=75 Identities=24% Similarity=0.629 Sum_probs=48.2
Q ss_pred eeecCccccccccee---eeCCCCCCCCCccCCcccCCCCCCCcEEEE--------EEeec---cceeeEEEEeCCCCcc
Q 019908 131 DLYNGTTKKLSLSRN---ILCPKCKGKGSKSGALGKCYGCQGTGMKIT--------TRQIG---LGMIQQMQHVCPECRG 196 (334)
Q Consensus 131 e~~~G~~~~i~~~~~---~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~--------~~~~~---~g~~~~~~~~C~~C~G 196 (334)
.++.|....+.++.. ..|..|.|.|. ..|+.|+|.|.... ..-.| ++.- ....|..|+|
T Consensus 170 ~mf~~~~~~~~vphs~~v~~ch~c~gRG~-----~vc~gc~g~G~~~y~~~~~m~c~sc~G~~~~k~g--t~~~C~~C~G 242 (406)
T KOG2813|consen 170 GMFSGVAHPAVVPHSMIVTFCHACLGRGA-----MVCHGCSGSGSNSYGIGTPMHCMSCTGVPPPKIG--THDLCYMCHG 242 (406)
T ss_pred CcccccccceeccchHhhhhhhcccCCCc-----eeccCcCCCCccccccCcceecccccCCCCCCCC--ccchhhhccC
Confidence 344554444444433 45999999994 47999999994211 00111 1111 2368889999
Q ss_pred ceEEEccCCCCCccCCCceeE
Q 019908 197 AGEVISERDKCPQCKANKVTQ 217 (334)
Q Consensus 197 ~G~~~~~~~~C~~C~G~g~~~ 217 (334)
+|+ .+|++|+|+|...
T Consensus 243 ~G~-----~~C~tC~grG~k~ 258 (406)
T KOG2813|consen 243 RGI-----KECHTCKGRGKKP 258 (406)
T ss_pred CCc-----ccCCcccCCCCcc
Confidence 986 7899999998765
No 112
>KOG3192 consensus Mitochondrial J-type chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=96.87 E-value=0.00068 Score=56.35 Aligned_cols=65 Identities=32% Similarity=0.575 Sum_probs=52.7
Q ss_pred CCCccccccccCCCC--CCCHHHHHHHHHHHHHHhCCCCCCCh---------HHHHHHHHHHhhcCCCcccchhcc
Q 019908 8 RSNNTKYYEILGVSK--SATEDELKKAYRKAAMKNHPDKGGDP---------EKFKELGQAYEVLSDPEKRDIYDQ 72 (334)
Q Consensus 8 ~~~~~~~y~iLgv~~--~a~~~eik~ayr~la~~~hPd~~~~~---------~~f~~i~~Ay~~L~d~~~r~~YD~ 72 (334)
+.+..+||.++|... ..++.-++.-|.-..+++|||+...+ +.-.++|+||.+|.||-+|+.|=.
T Consensus 4 ~~~~~~ff~~Fg~e~~~~~~p~~l~~~~~~~skkL~~d~~~~~~~~~~d~a~eqSa~lnkAY~TLk~pL~RA~Yil 79 (168)
T KOG3192|consen 4 MGSPSRFFDIFGMELSFKIDPDKLKEKYTDISKKLHPDRPGLSFAGDTDQASEQSAELNKAYDTLKDPLARARYLL 79 (168)
T ss_pred cchHHHHHHHhccccCCCCCcchhhHHHHHHHHhhCcccccccccccchhHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 557789999997654 44556677789999999999985321 678999999999999999999864
No 113
>TIGR02642 phage_xxxx uncharacterized phage protein. This uncharacterized protein is found in prophage regions of Shewanella oneidensis MR-1, Vibrio vulnificus YJ016, Yersinia pseudotuberculosis IP 32953, and Aeromonas hydrophila ATCC7966. It appears to have regions of sequence similarity to phage lambda antitermination protein Q.
Probab=96.74 E-value=0.001 Score=57.74 Aligned_cols=32 Identities=31% Similarity=0.704 Sum_probs=22.4
Q ss_pred eeeeCCCCCCCCCccCCcccCCCCCCCcEEEE
Q 019908 144 RNILCPKCKGKGSKSGALGKCYGCQGTGMKIT 175 (334)
Q Consensus 144 ~~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~ 175 (334)
+...|+.|+|+|.......+|+.|+|+|++..
T Consensus 98 ~~~~C~~C~G~G~~i~~~~~C~~C~G~G~v~~ 129 (186)
T TIGR02642 98 NSCKCPRCRGTGLIQRRQRECDTCAGTGRFRP 129 (186)
T ss_pred cCCcCCCCCCeeEEecCCCCCCCCCCccEEee
Confidence 36678888888876554566777777777654
No 114
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=96.43 E-value=0.0016 Score=56.29 Aligned_cols=52 Identities=40% Similarity=0.644 Sum_probs=44.5
Q ss_pred CccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCC---Ch--------HHHHHHHHHHhhc
Q 019908 10 NNTKYYEILGVSKSATEDELKKAYRKAAMKNHPDKGG---DP--------EKFKELGQAYEVL 61 (334)
Q Consensus 10 ~~~~~y~iLgv~~~a~~~eik~ayr~la~~~hPd~~~---~~--------~~f~~i~~Ay~~L 61 (334)
.+.+.|++|++...++..+|+++||++...+|||+-. .+ +++++|++||+.+
T Consensus 111 ~~~~~l~~l~~~~~~~~~~i~~~~r~l~~e~~~d~a~~~~~~~e~~~~~~~~~~~i~~a~~~~ 173 (174)
T COG1076 111 DREDALKVLGVEIKADQDAIKKAYRKLLSEQHPDKAAAKGLKLEFIEKLKEKLQEIQEAYEDI 173 (174)
T ss_pred cchhHHHHhcCchhhhHHHHHHHHHHHHHhcCHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhc
Confidence 3378999999999999999999999999999999743 22 6788899999753
No 115
>PF03656 Pam16: Pam16; InterPro: IPR005341 The Pam16 protein is the fifth essential subunit of the pre-sequence translocase-associated protein import motor (PAM) []. In Saccharomyces cerevisiae (Baker's yeast), Pam16 is required for preprotein translocation into the matrix, but not for protein insertion into the inner membrane [].; PDB: 2GUZ_J.
Probab=95.84 E-value=0.015 Score=47.35 Aligned_cols=56 Identities=25% Similarity=0.310 Sum_probs=42.5
Q ss_pred CCccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHhhcCCC
Q 019908 9 SNNTKYYEILGVSKSATEDELKKAYRKAAMKNHPDKGGDPEKFKELGQAYEVLSDP 64 (334)
Q Consensus 9 ~~~~~~y~iLgv~~~a~~~eik~ayr~la~~~hPd~~~~~~~f~~i~~Ay~~L~d~ 64 (334)
+.......||+|++.++.++|.+.|.+|-...+|++.++.-.=.+|..|.|.|..+
T Consensus 55 Mtl~EA~~ILnv~~~~~~eeI~k~y~~Lf~~Nd~~kGGSfYLQSKV~rAKErl~~E 110 (127)
T PF03656_consen 55 MTLDEARQILNVKEELSREEIQKRYKHLFKANDPSKGGSFYLQSKVFRAKERLEQE 110 (127)
T ss_dssp --HHHHHHHHT--G--SHHHHHHHHHHHHHHT-CCCTS-HHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHcCCCCccCHHHHHHHHHHHHhccCCCcCCCHHHHHHHHHHHHHHHHH
Confidence 45557789999999999999999999999999999999987778888999988643
No 116
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=94.83 E-value=0.0095 Score=51.48 Aligned_cols=60 Identities=30% Similarity=0.482 Sum_probs=48.6
Q ss_pred ccccccCCCCCCCH--HHHHHHHHHHHHHhCCCCCCCh---------HHHHHHHHHHhhcCCCcccchhcc
Q 019908 13 KYYEILGVSKSATE--DELKKAYRKAAMKNHPDKGGDP---------EKFKELGQAYEVLSDPEKRDIYDQ 72 (334)
Q Consensus 13 ~~y~iLgv~~~a~~--~eik~ayr~la~~~hPd~~~~~---------~~f~~i~~Ay~~L~d~~~r~~YD~ 72 (334)
+++..++..+.+.. +.++..|+.+++++|||+.... +.+..++.||.+|.||-+|+.|=.
T Consensus 2 ~~~~~~~~~~~f~~~~~~l~~~~~~~~~~~~~dr~~~~~~~~~~~~l~~~~~~~~a~~tLk~~l~ra~~~l 72 (174)
T COG1076 2 DGFVLFGLPRAFQIDLDALKLQYRELQRAYHPDRFGKASEAEQRKALQQSAEVNPAYQTLKDPLLRAEYLL 72 (174)
T ss_pred CcccccccHHHHHHHHhHhhhhHHHHHHhhCcccccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 45566666666643 5699999999999999997643 578999999999999999998864
No 117
>KOG0431 consensus Auxilin-like protein and related proteins containing DnaJ domain [General function prediction only]
Probab=94.20 E-value=0.051 Score=53.95 Aligned_cols=44 Identities=34% Similarity=0.533 Sum_probs=33.5
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhCCCCCCCh-----------HHHHHHHHHHhhcC
Q 019908 19 GVSKSATEDELKKAYRKAAMKNHPDKGGDP-----------EKFKELGQAYEVLS 62 (334)
Q Consensus 19 gv~~~a~~~eik~ayr~la~~~hPd~~~~~-----------~~f~~i~~Ay~~L~ 62 (334)
.+..=.+.++||+||||..+..||||-+.. +.|..+++||....
T Consensus 395 sltDLVtp~~VKKaYrKA~L~VHPDKlqq~gas~~qK~Iaekvfd~l~eawn~f~ 449 (453)
T KOG0431|consen 395 SLTDLVTPAQVKKAYRKAVLCVHPDKLQQKGASLEQKYIAEKVFDALSEAWNKFN 449 (453)
T ss_pred chhhccCHHHHHHHHHhhhheeCcccccCCcccHHHHHHHHHHHHHHHHHHHhhh
Confidence 344455889999999999999999996532 56777777776543
No 118
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=92.42 E-value=0.13 Score=43.19 Aligned_cols=25 Identities=24% Similarity=0.578 Sum_probs=15.7
Q ss_pred eeCCCCCCCCCccCCcccCCCCCCCcEEEE
Q 019908 146 ILCPKCKGKGSKSGALGKCYGCQGTGMKIT 175 (334)
Q Consensus 146 ~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~ 175 (334)
..|..|.|.+.. +|..|+|+=+++.
T Consensus 100 ~~C~~Cgg~rfv-----~C~~C~Gs~k~~~ 124 (147)
T cd03031 100 GVCEGCGGARFV-----PCSECNGSCKVFA 124 (147)
T ss_pred CCCCCCCCcCeE-----ECCCCCCcceEEe
Confidence 347777776654 5666766666543
No 119
>PF13446 RPT: A repeated domain in UCH-protein
Probab=91.49 E-value=0.21 Score=35.22 Aligned_cols=47 Identities=26% Similarity=0.500 Sum_probs=36.2
Q ss_pred CccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHhhcCC
Q 019908 10 NNTKYYEILGVSKSATEDELKKAYRKAAMKNHPDKGGDPEKFKELGQAYEVLSD 63 (334)
Q Consensus 10 ~~~~~y~iLgv~~~a~~~eik~ayr~la~~~hPd~~~~~~~f~~i~~Ay~~L~d 63 (334)
+-.+.|+.|||+++++.+.|-.+|+.... .+|.....+.+|..++.+
T Consensus 3 ~~~~Ay~~Lgi~~~~~Dd~Ii~~f~~~~~-------~~P~~~~~~r~AL~~Ia~ 49 (62)
T PF13446_consen 3 DVEEAYEILGIDEDTDDDFIISAFQSKVN-------DDPSQKDTLREALRVIAE 49 (62)
T ss_pred CHHHHHHHhCcCCCCCHHHHHHHHHHHHH-------cChHhHHHHHHHHHHHHH
Confidence 44678999999999999999999999886 233455556677776653
No 120
>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=91.49 E-value=0.17 Score=46.23 Aligned_cols=51 Identities=27% Similarity=0.616 Sum_probs=32.3
Q ss_pred eeCCCCCCCCCccCCcccCCCCCCCcEEEEEEeeccceeeEEEEeCCCCccceEEEccCCCCCccC
Q 019908 146 ILCPKCKGKGSKSGALGKCYGCQGTGMKITTRQIGLGMIQQMQHVCPECRGAGEVISERDKCPQCK 211 (334)
Q Consensus 146 ~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~~~~C~~C~ 211 (334)
-.|..|.|-+.. +|..|+|+=++...-.-. +. -.+|+.|+=.|- -+|+.|.
T Consensus 230 ~~C~~CGg~rFl-----pC~~C~GS~kv~~~~~~~-~~----~~rC~~CNENGL-----vrCp~Cs 280 (281)
T KOG2824|consen 230 GVCESCGGARFL-----PCSNCHGSCKVHEEEEDD-GG----VLRCLECNENGL-----VRCPVCS 280 (281)
T ss_pred CcCCCcCCcceE-----ecCCCCCceeeeeeccCC-Cc----EEECcccCCCCc-----eeCCccC
Confidence 457888777664 688888887766521011 11 167888887775 3577775
No 121
>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.
Probab=90.10 E-value=0.57 Score=41.17 Aligned_cols=38 Identities=21% Similarity=0.359 Sum_probs=32.2
Q ss_pred CCCCCHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHhhcC
Q 019908 21 SKSATEDELKKAYRKAAMKNHPDKGGDPEKFKELGQAYEVLS 62 (334)
Q Consensus 21 ~~~a~~~eik~ayr~la~~~hPd~~~~~~~f~~i~~Ay~~L~ 62 (334)
+++||.+||.+|+.++..+| ..|++.-.+|-.||+.+.
T Consensus 1 S~~ASfeEIq~Arn~ll~~y----~gd~~~~~~IEaAYD~IL 38 (194)
T PF11833_consen 1 SEDASFEEIQAARNRLLAQY----AGDEKSREAIEAAYDAIL 38 (194)
T ss_pred CCCCCHHHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHHH
Confidence 57999999999999999998 445677888999999654
No 122
>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=88.50 E-value=0.18 Score=47.15 Aligned_cols=59 Identities=29% Similarity=0.575 Sum_probs=42.6
Q ss_pred eeeeecCcccccccceeeeCCCCCCCCCccC------CcccCCCCCCCcEEEEEEeeccceeeEEEEeCCCCccceEEE
Q 019908 129 LEDLYNGTTKKLSLSRNILCPKCKGKGSKSG------ALGKCYGCQGTGMKITTRQIGLGMIQQMQHVCPECRGAGEVI 201 (334)
Q Consensus 129 l~e~~~G~~~~i~~~~~~~C~~C~G~G~~~~------~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~ 201 (334)
..+.+.|...+ .......|..|.|+|.... ...+|+.|+|.|.+.. ..|..|.|.|.+.
T Consensus 166 ~~~t~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~c~~~~~~~~-------------~~c~~~~g~~~v~ 230 (288)
T KOG0715|consen 166 DCETCFGSGAE-EGAKRESCKTCSGRGLVSNPKEDPFILYTCSYCLGRGLVLR-------------DNCQACSGAGQVR 230 (288)
T ss_pred ccccccCcCcc-cccccccchhhhCcccccccccCCcceeecccccccceecc-------------chHHHhhcchhhh
Confidence 44566666644 5556788999999993322 1136999999998765 4599999999654
No 123
>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=88.24 E-value=0.49 Score=43.36 Aligned_cols=40 Identities=28% Similarity=0.725 Sum_probs=32.1
Q ss_pred ccCCCCCCCcEEEEEEeeccceeeEEEEeCCCCccceEEEc------cCCCCCccCCCceeE
Q 019908 162 GKCYGCQGTGMKITTRQIGLGMIQQMQHVCPECRGAGEVIS------ERDKCPQCKANKVTQ 217 (334)
Q Consensus 162 ~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~------~~~~C~~C~G~g~~~ 217 (334)
..|..|+|.++ .+|..|+|+-++.. .-.+|..|+-.|.+.
T Consensus 230 ~~C~~CGg~rF----------------lpC~~C~GS~kv~~~~~~~~~~~rC~~CNENGLvr 275 (281)
T KOG2824|consen 230 GVCESCGGARF----------------LPCSNCHGSCKVHEEEEDDGGVLRCLECNENGLVR 275 (281)
T ss_pred CcCCCcCCcce----------------EecCCCCCceeeeeeccCCCcEEECcccCCCCcee
Confidence 46999999986 68999999988775 234899999888764
No 124
>smart00709 Zpr1 Duplicated domain in the epidermal growth factor- and elongation factor-1alpha-binding protein Zpr1. Also present in archaeal proteins.
Probab=86.46 E-value=4.6 Score=34.37 Aligned_cols=20 Identities=25% Similarity=0.375 Sum_probs=15.6
Q ss_pred EEEEEeccCccCCcEEEEec
Q 019908 221 VLEVHVEKGMQHGQKIAFEG 240 (334)
Q Consensus 221 ~~~v~Ip~G~~~G~~i~l~g 240 (334)
.+.+.||||...|..-.++|
T Consensus 81 El~~ei~pg~~~g~itTVEG 100 (160)
T smart00709 81 ELDLEIPPGPLGGFITTVEG 100 (160)
T ss_pred eeeEEecCCCCCcEEEehHH
Confidence 67788888887887777765
No 125
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=83.51 E-value=1.3 Score=37.20 Aligned_cols=39 Identities=38% Similarity=0.980 Sum_probs=32.2
Q ss_pred ccCCCCCCCcEEEEEEeeccceeeEEEEeCCCCccceEEEccC-------CCCCccCCCcee
Q 019908 162 GKCYGCQGTGMKITTRQIGLGMIQQMQHVCPECRGAGEVISER-------DKCPQCKANKVT 216 (334)
Q Consensus 162 ~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~~-------~~C~~C~G~g~~ 216 (334)
..|..|+|.+. .+|..|+|+-++.... .+|+.|+-.|.+
T Consensus 100 ~~C~~Cgg~rf----------------v~C~~C~Gs~k~~~~~~~~~~~~~rC~~Cnengl~ 145 (147)
T cd03031 100 GVCEGCGGARF----------------VPCSECNGSCKVFAENATAAGGFLRCPECNENGLV 145 (147)
T ss_pred CCCCCCCCcCe----------------EECCCCCCcceEEeccCcccccEEECCCCCccccc
Confidence 46999999997 6899999998887654 489999987765
No 126
>TIGR00310 ZPR1_znf ZPR1 zinc finger domain.
Probab=81.38 E-value=8.2 Score=33.87 Aligned_cols=20 Identities=30% Similarity=0.461 Sum_probs=15.8
Q ss_pred EEEEEeccC-ccCCcEEEEec
Q 019908 221 VLEVHVEKG-MQHGQKIAFEG 240 (334)
Q Consensus 221 ~~~v~Ip~G-~~~G~~i~l~g 240 (334)
.+.+.|||| +..|..-.+.|
T Consensus 80 El~lei~pg~~~~G~iTTVEG 100 (192)
T TIGR00310 80 ELGLDIEPGPTSGGFITNLEG 100 (192)
T ss_pred ceEEEECCCccCCceEEeeHh
Confidence 677888888 68888888865
No 127
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=81.28 E-value=1.6 Score=48.07 Aligned_cols=65 Identities=22% Similarity=0.611 Sum_probs=40.1
Q ss_pred CcccccccceeeeCCCCCCCCCccCCcccCCCCCCCcEEEEEEeeccceeeEEEEeCCCCccceEEEcc---CCCCCccC
Q 019908 135 GTTKKLSLSRNILCPKCKGKGSKSGALGKCYGCQGTGMKITTRQIGLGMIQQMQHVCPECRGAGEVISE---RDKCPQCK 211 (334)
Q Consensus 135 G~~~~i~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~---~~~C~~C~ 211 (334)
+...++.+. ...|+.|...... ..|+.|+..=.. ...|+.|+..= ... ...|+.|.
T Consensus 658 ~G~ieVEV~-~rkCPkCG~~t~~----~fCP~CGs~te~--------------vy~CPsCGaev--~~des~a~~CP~CG 716 (1337)
T PRK14714 658 GGVIEVEVG-RRRCPSCGTETYE----NRCPDCGTHTEP--------------VYVCPDCGAEV--PPDESGRVECPRCD 716 (1337)
T ss_pred CCeEEEEEE-EEECCCCCCcccc----ccCcccCCcCCC--------------ceeCccCCCcc--CCCccccccCCCCC
Confidence 334344443 4679999876432 389999876321 14799998741 110 24899999
Q ss_pred CCceeEEeE
Q 019908 212 ANKVTQEKK 220 (334)
Q Consensus 212 G~g~~~~~~ 220 (334)
..-+.....
T Consensus 717 tplv~~~~~ 725 (1337)
T PRK14714 717 VELTPYQRR 725 (1337)
T ss_pred CcccccceE
Confidence 875555444
No 128
>PRK04023 DNA polymerase II large subunit; Validated
Probab=81.09 E-value=1.6 Score=46.93 Aligned_cols=69 Identities=20% Similarity=0.446 Sum_probs=42.5
Q ss_pred eeeeec-CcccccccceeeeCCCCCCCCCccCCcccCCCCCCCcEEEEEEeeccceeeEEEEeCCCCccceEEEccCCCC
Q 019908 129 LEDLYN-GTTKKLSLSRNILCPKCKGKGSKSGALGKCYGCQGTGMKITTRQIGLGMIQQMQHVCPECRGAGEVISERDKC 207 (334)
Q Consensus 129 l~e~~~-G~~~~i~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~~~~C 207 (334)
+.+++. +...++.+. ...|+.|.-.+ ....|+.|+..=.. ...|+.|.-... ...|
T Consensus 610 i~~A~~~~g~~eVEVg-~RfCpsCG~~t----~~frCP~CG~~Te~--------------i~fCP~CG~~~~----~y~C 666 (1121)
T PRK04023 610 INKAAKYKGTIEVEIG-RRKCPSCGKET----FYRRCPFCGTHTEP--------------VYRCPRCGIEVE----EDEC 666 (1121)
T ss_pred HHHHHhcCCceeeccc-CccCCCCCCcC----CcccCCCCCCCCCc--------------ceeCccccCcCC----CCcC
Confidence 335555 444444444 34699998664 33579999976211 257999954432 3679
Q ss_pred CccCCCceeEEeE
Q 019908 208 PQCKANKVTQEKK 220 (334)
Q Consensus 208 ~~C~G~g~~~~~~ 220 (334)
+.|...-......
T Consensus 667 PKCG~El~~~s~~ 679 (1121)
T PRK04023 667 EKCGREPTPYSKR 679 (1121)
T ss_pred CCCCCCCCccceE
Confidence 9999765444443
No 129
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=79.40 E-value=1.4 Score=47.69 Aligned_cols=13 Identities=38% Similarity=0.928 Sum_probs=8.8
Q ss_pred cCCCCCCCcEEEE
Q 019908 163 KCYGCQGTGMKIT 175 (334)
Q Consensus 163 ~C~~C~G~G~~~~ 175 (334)
.|+.|.|.|.+..
T Consensus 738 ~C~~C~G~G~~~~ 750 (924)
T TIGR00630 738 RCEACQGDGVIKI 750 (924)
T ss_pred CCCCCccceEEEE
Confidence 4777777777654
No 130
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=78.82 E-value=1.9 Score=46.87 Aligned_cols=13 Identities=38% Similarity=0.928 Sum_probs=9.5
Q ss_pred cCCCCCCCcEEEE
Q 019908 163 KCYGCQGTGMKIT 175 (334)
Q Consensus 163 ~C~~C~G~G~~~~ 175 (334)
.|+.|.|.|.+..
T Consensus 740 ~C~~C~G~G~~~~ 752 (943)
T PRK00349 740 RCEACQGDGVIKI 752 (943)
T ss_pred CCCcccccceEEE
Confidence 4888888887664
No 131
>KOG0724 consensus Zuotin and related molecular chaperones (DnaJ superfamily), contains DNA-binding domains [Posttranslational modification, protein turnover, chaperones]
Probab=78.38 E-value=2.2 Score=40.64 Aligned_cols=50 Identities=44% Similarity=0.691 Sum_probs=40.6
Q ss_pred CCCHHHHHHHHHHHHHHhCCCCCC--------ChHHHHHHHHHHhhcCCCcccchhcc
Q 019908 23 SATEDELKKAYRKAAMKNHPDKGG--------DPEKFKELGQAYEVLSDPEKRDIYDQ 72 (334)
Q Consensus 23 ~a~~~eik~ayr~la~~~hPd~~~--------~~~~f~~i~~Ay~~L~d~~~r~~YD~ 72 (334)
-++..+|..+|+..++..||++-. ..+.|+.|.+||++|.+..+|..+|.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~i~ka~~i~~~~~~~~t~~~ 60 (335)
T KOG0724|consen 3 LASEDELRLAYREMALKSHPEKKSFYEKLSLWTEEEFKKIEKALAILDDDEPRRTPDS 60 (335)
T ss_pred cccHHHHHHHHHHHhhhcCcHHHHHHHHhhhhHHHHHHHHHHHHHHHhccccccchhh
Confidence 367788999999999999999873 12789999999999998665555554
No 132
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=74.47 E-value=1.5 Score=47.53 Aligned_cols=35 Identities=23% Similarity=0.528 Sum_probs=27.2
Q ss_pred EeCCCCccceEEEc-------cCCCCCccCCCceeEEeEEEE
Q 019908 189 HVCPECRGAGEVIS-------ERDKCPQCKANKVTQEKKVLE 223 (334)
Q Consensus 189 ~~C~~C~G~G~~~~-------~~~~C~~C~G~g~~~~~~~~~ 223 (334)
-.|+.|.|.|.+.. ...+|+.|+|+++..+.-.++
T Consensus 737 G~C~~C~G~G~~~~~~~f~~~~~~~C~~C~G~R~~~e~l~v~ 778 (924)
T TIGR00630 737 GRCEACQGDGVIKIEMHFLPDVYVPCEVCKGKRYNRETLEVK 778 (924)
T ss_pred CCCCCCccceEEEEEccCCCCcccCCCCcCCceeChHHHhce
Confidence 46999999999762 236999999999888764333
No 133
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=72.67 E-value=4.2 Score=43.07 Aligned_cols=34 Identities=26% Similarity=0.561 Sum_probs=19.6
Q ss_pred ccCCCCCCCcEEEEEEeeccceeeEEEEeCCCCccceE
Q 019908 162 GKCYGCQGTGMKITTRQIGLGMIQQMQHVCPECRGAGE 199 (334)
Q Consensus 162 ~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~ 199 (334)
-.|..|+|.|.+......-| .+..+|+.|+|+-+
T Consensus 731 GRCe~C~GdG~ikIeM~FLp----dVyv~CevC~GkRY 764 (935)
T COG0178 731 GRCEACQGDGVIKIEMHFLP----DVYVPCEVCHGKRY 764 (935)
T ss_pred cCCccccCCceEEEEeccCC----CceeeCCCcCCccc
Confidence 35888888887755333222 22356666666543
No 134
>TIGR00340 zpr1_rel ZPR1-related zinc finger protein. A model ZPR1_znf (TIGR00310) has been created to describe the domain shared by this protein and ZPR1.
Probab=71.00 E-value=14 Score=31.44 Aligned_cols=20 Identities=30% Similarity=0.477 Sum_probs=14.3
Q ss_pred EEEEEeccCc-cCCcEEEEec
Q 019908 221 VLEVHVEKGM-QHGQKIAFEG 240 (334)
Q Consensus 221 ~~~v~Ip~G~-~~G~~i~l~g 240 (334)
.+.+.||||. ..|..-+++|
T Consensus 78 El~lei~pg~~~~G~iTTVEG 98 (163)
T TIGR00340 78 ELGIKIEPGPASQGYISNIEG 98 (163)
T ss_pred ceeEEecCCCcCCceEEehHh
Confidence 5778888887 5777666754
No 135
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=67.68 E-value=3.6 Score=47.60 Aligned_cols=33 Identities=27% Similarity=0.643 Sum_probs=18.9
Q ss_pred cCCCCCCCcEEEEEEeeccceeeEEEEeCCCCccceE
Q 019908 163 KCYGCQGTGMKITTRQIGLGMIQQMQHVCPECRGAGE 199 (334)
Q Consensus 163 ~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~ 199 (334)
.|+.|.|.|.+....+ |+--+..+|+.|+|+.+
T Consensus 1609 rC~~C~G~G~i~i~m~----fl~dv~~~C~~C~G~R~ 1641 (1809)
T PRK00635 1609 QCSDCWGLGYQWIDRA----FYALEKRPCPTCSGFRI 1641 (1809)
T ss_pred CCCCCccCceEEEecc----cCCCcccCCCCCCCcCC
Confidence 4888888887654322 22223356666666543
No 136
>PF07739 TipAS: TipAS antibiotic-recognition domain; InterPro: IPR012925 TipAL is a bacterial transcriptional regulator of the MerR family. The tipA gene can be expressed as a long form, TipAL, and a short form, TipAS, which constitutes the C-terminal part of TipAL. TipAS forms the antibiotic-recognition domain []. This domain, which has an alpha-helical globin-like fold, is also found at the C terminus of other MerR family transcription factors, including Mta, a central regulator of multidrug resistance in Bacillus subtilis [], and SkgA from Caulobacter crescentus []. ; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent; PDB: 1NY9_A 3HH0_A 3QAO_A.
Probab=64.82 E-value=8.5 Score=30.22 Aligned_cols=53 Identities=32% Similarity=0.590 Sum_probs=37.1
Q ss_pred cCCCCCCCH-HHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHhhcCCCcccchhc-ccCh
Q 019908 18 LGVSKSATE-DELKKAYRKAAMKNHPDKGGDPEKFKELGQAYEVLSDPEKRDIYD-QYGE 75 (334)
Q Consensus 18 Lgv~~~a~~-~eik~ayr~la~~~hPd~~~~~~~f~~i~~Ay~~L~d~~~r~~YD-~~G~ 75 (334)
-|++|+... .++-+.++.+...+++ .+++.+..|.+.| +.||.-+..|| .++.
T Consensus 50 ~g~~p~s~evq~l~~~~~~~~~~~~~---~~~~~~~~l~~~y--~~~~~~~~~~~~~~~~ 104 (118)
T PF07739_consen 50 EGVDPDSPEVQELAERWMELINQFTG---GDPELLRGLAQMY--VEDPRFAAMYDKKFGP 104 (118)
T ss_dssp HT--TT-HHHHHHHHHHHHHHHHSS------HHHHHHHHHHT--TSTHHHHHHHG-GGST
T ss_pred cCCCcCCHHHHHHHHHHHHHHHHHhC---CCHHHHHHHHHHH--HcCHHHHhhccccCCH
Confidence 367777765 5678888888888777 5668999999999 67888888888 6664
No 137
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=63.26 E-value=2.9 Score=45.46 Aligned_cols=30 Identities=23% Similarity=0.466 Sum_probs=21.2
Q ss_pred eeeCCCCCCCCCccCC-------cccCCCCCCCcEEE
Q 019908 145 NILCPKCKGKGSKSGA-------LGKCYGCQGTGMKI 174 (334)
Q Consensus 145 ~~~C~~C~G~G~~~~~-------~~~C~~C~G~G~~~ 174 (334)
.-.|+.|+|.|..... ..+|+.|+|+...-
T Consensus 738 ~G~C~~C~G~G~~~~~~~f~~~~~~~C~~C~G~R~~~ 774 (943)
T PRK00349 738 GGRCEACQGDGVIKIEMHFLPDVYVPCDVCKGKRYNR 774 (943)
T ss_pred CCCCCcccccceEEEEeccCCCccccCccccCccccc
Confidence 3459999999986532 25688887777653
No 138
>PF03367 zf-ZPR1: ZPR1 zinc-finger domain; InterPro: IPR004457 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents ZPR1-type zinc finger domains. An orthologous protein found once in each of the completed archaeal genomes corresponds to a zinc finger-containing domain repeated as the N-terminal and C-terminal halves of the mouse protein ZPR1. ZPR1 is an experimentally proven zinc-binding protein that binds the tyrosine kinase domain of the epidermal growth factor receptor (EGFR); binding is inhibited by EGF stimulation and tyrosine phosphorylation, and activation by EGF is followed by some redistribution of ZPR1 to the nucleus. By analogy, other proteins with the ZPR1 zinc finger domain may be regulatory proteins that sense protein phosphorylation state and/or participate in signal transduction (see also IPR004470 from INTERPRO). Deficiencies in ZPR1 may contribute to neurodegenerative disorders. ZPR1 appears to be down-regulated in patients with spinal muscular atrophy (SMA), a disease characterised by degeneration of the alpha-motor neurons in the spinal cord that can arise from mutations affecting the expression of Survival Motor Neurons (SMN) []. ZPR1 interacts with complexes formed by SMN [], and may act as a modifier that effects the severity of SMA. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2QKD_A.
Probab=61.77 E-value=13 Score=31.55 Aligned_cols=37 Identities=19% Similarity=0.334 Sum_probs=18.1
Q ss_pred cCCCCCCCcEEEEEE-ee-ccceeeEEEEeCCCCccceE
Q 019908 163 KCYGCQGTGMKITTR-QI-GLGMIQQMQHVCPECRGAGE 199 (334)
Q Consensus 163 ~C~~C~G~G~~~~~~-~~-~~g~~~~~~~~C~~C~G~G~ 199 (334)
.|+.|+..|...... .. .++-+.-+...|+.|+=+-.
T Consensus 3 ~Cp~C~~~~~~~~~~~~IP~F~evii~sf~C~~CGyk~~ 41 (161)
T PF03367_consen 3 LCPNCGENGTTRILLTDIPYFKEVIIMSFECEHCGYKNN 41 (161)
T ss_dssp E-TTTSSCCEEEEEEEEETTTEEEEEEEEE-TTT--EEE
T ss_pred cCCCCCCCcEEEEEEEcCCCCceEEEEEeECCCCCCEee
Confidence 577777777653322 22 22333345578999976644
No 139
>PF07709 SRR: Seven Residue Repeat; InterPro: IPR011714 This repeat is found in some Plasmodium and Theileria proteins.
Probab=60.02 E-value=6.2 Score=19.21 Aligned_cols=13 Identities=54% Similarity=0.833 Sum_probs=10.1
Q ss_pred HHHHHHHHHhhcC
Q 019908 50 KFKELGQAYEVLS 62 (334)
Q Consensus 50 ~f~~i~~Ay~~L~ 62 (334)
.|.++..||+.|+
T Consensus 2 ~~~~V~~aY~~l~ 14 (14)
T PF07709_consen 2 KFEKVKNAYEQLS 14 (14)
T ss_pred cHHHHHHHHHhcC
Confidence 5778888888774
No 140
>PF07092 DUF1356: Protein of unknown function (DUF1356); InterPro: IPR009790 This family consists of several hypothetical mammalian proteins of around 250 residues in length. The function of this family is unknown.
Probab=59.56 E-value=5.1 Score=36.22 Aligned_cols=16 Identities=31% Similarity=0.943 Sum_probs=11.2
Q ss_pred eeeCCCCCCCCCccCC
Q 019908 145 NILCPKCKGKGSKSGA 160 (334)
Q Consensus 145 ~~~C~~C~G~G~~~~~ 160 (334)
.++||+|+|+|..+..
T Consensus 38 ~vtCPTCqGtGrIP~e 53 (238)
T PF07092_consen 38 SVTCPTCQGTGRIPRE 53 (238)
T ss_pred CCcCCCCcCCccCCcc
Confidence 4578888888876643
No 141
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=59.46 E-value=4.3 Score=46.95 Aligned_cols=31 Identities=23% Similarity=0.393 Sum_probs=23.7
Q ss_pred eeeCCCCCCCCCccCC-------cccCCCCCCCcEEEE
Q 019908 145 NILCPKCKGKGSKSGA-------LGKCYGCQGTGMKIT 175 (334)
Q Consensus 145 ~~~C~~C~G~G~~~~~-------~~~C~~C~G~G~~~~ 175 (334)
.-.|+.|+|.|..... ..+|+.|+|+.+.-.
T Consensus 1607 ~GrC~~C~G~G~i~i~m~fl~dv~~~C~~C~G~R~~~e 1644 (1809)
T PRK00635 1607 QGQCSDCWGLGYQWIDRAFYALEKRPCPTCSGFRIQPL 1644 (1809)
T ss_pred CCCCCCCccCceEEEecccCCCcccCCCCCCCcCCCHH
Confidence 4569999999985432 368999999987643
No 142
>PF03833 PolC_DP2: DNA polymerase II large subunit DP2; InterPro: IPR016033 DP2 is the large subunit of a two-subunit novel archaebacterial replicative DNA polymerase first characterised for Pyrococcus furiosus. The structure of DP2 appears to be organised as a ~950 residue component separated from a ~300 residue component by a ~150 residue intein. The other subunit, DP1, has sequence similarity to the eukaryotic DNA polymerase delta small subunit. This entry represents the N-terminal ~950 residue component of DP2.; GO: 0003887 DNA-directed DNA polymerase activity; PDB: 3O59_X.
Probab=57.60 E-value=3.4 Score=43.69 Aligned_cols=52 Identities=31% Similarity=0.738 Sum_probs=0.0
Q ss_pred eeCCCCCCCCCccCCcccCCCCCCCcEEEEEEeeccceeeEEEEeCCCCccceEEEccCCCCCccCCCceeEEe
Q 019908 146 ILCPKCKGKGSKSGALGKCYGCQGTGMKITTRQIGLGMIQQMQHVCPECRGAGEVISERDKCPQCKANKVTQEK 219 (334)
Q Consensus 146 ~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~~ 219 (334)
..|+.|.-... ...|+.|+..=..+ -.|+.|+-.- ....|+.|.-.......
T Consensus 656 r~Cp~Cg~~t~----~~~Cp~CG~~T~~~--------------~~Cp~C~~~~----~~~~C~~C~~~~~~~~~ 707 (900)
T PF03833_consen 656 RRCPKCGKETF----YNRCPECGSHTEPV--------------YVCPDCGIEV----EEDECPKCGRETTSYSK 707 (900)
T ss_dssp --------------------------------------------------------------------------
T ss_pred ccCcccCCcch----hhcCcccCCccccc--------------eecccccccc----CccccccccccCcccce
Confidence 46998875433 24688887654322 4788887542 23689999876443333
No 143
>PRK12380 hydrogenase nickel incorporation protein HybF; Provisional
Probab=57.52 E-value=9.3 Score=30.46 Aligned_cols=40 Identities=15% Similarity=0.346 Sum_probs=19.8
Q ss_pred cCcccccc-cceeeeCCCCCCCCCccCCcccCCCCCCCcEE
Q 019908 134 NGTTKKLS-LSRNILCPKCKGKGSKSGALGKCYGCQGTGMK 173 (334)
Q Consensus 134 ~G~~~~i~-~~~~~~C~~C~G~G~~~~~~~~C~~C~G~G~~ 173 (334)
.|+...+. ++-...|..|............||.|++....
T Consensus 58 egA~L~I~~vp~~~~C~~Cg~~~~~~~~~~~CP~Cgs~~~~ 98 (113)
T PRK12380 58 QGCDLHIVYKPAQAWCWDCSQVVEIHQHDAQCPHCHGERLR 98 (113)
T ss_pred CCCEEEEEeeCcEEEcccCCCEEecCCcCccCcCCCCCCcE
Confidence 34443332 33456688887544433333346666655443
No 144
>KOG3442 consensus Uncharacterized conserved protein [Function unknown]
Probab=57.33 E-value=17 Score=29.42 Aligned_cols=53 Identities=25% Similarity=0.252 Sum_probs=40.1
Q ss_pred CccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHhhcC
Q 019908 10 NNTKYYEILGVSKSATEDELKKAYRKAAMKNHPDKGGDPEKFKELGQAYEVLS 62 (334)
Q Consensus 10 ~~~~~y~iLgv~~~a~~~eik~ayr~la~~~hPd~~~~~~~f~~i~~Ay~~L~ 62 (334)
.....-.||+|++..+.+||.+.|..|-.-.++.+.++=-.=.++-.|-|-|.
T Consensus 57 TlqEa~qILnV~~~ln~eei~k~yehLFevNdkskGGSFYLQSKVfRAkErld 109 (132)
T KOG3442|consen 57 TLQEAQQILNVKEPLNREEIEKRYEHLFEVNDKSKGGSFYLQSKVFRAKERLD 109 (132)
T ss_pred cHHHHhhHhCCCCCCCHHHHHHHHHHHHhccCcccCcceeehHHHHHHHHHHH
Confidence 34456689999999999999999999999998888876433333444666554
No 145
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=55.60 E-value=4.6 Score=42.77 Aligned_cols=38 Identities=24% Similarity=0.414 Sum_probs=27.2
Q ss_pred cccee-eeCCCCCCCCCccCC-------cccCCCCCCCcEEEEEEe
Q 019908 141 SLSRN-ILCPKCKGKGSKSGA-------LGKCYGCQGTGMKITTRQ 178 (334)
Q Consensus 141 ~~~~~-~~C~~C~G~G~~~~~-------~~~C~~C~G~G~~~~~~~ 178 (334)
+++.+ -.|.+|+|.|..... ..+|+.|+|+-+.-.+.+
T Consensus 725 SFNvkGGRCe~C~GdG~ikIeM~FLpdVyv~CevC~GkRYn~EtLe 770 (935)
T COG0178 725 SFNVKGGRCEACQGDGVIKIEMHFLPDVYVPCEVCHGKRYNRETLE 770 (935)
T ss_pred cccCCCcCCccccCCceEEEEeccCCCceeeCCCcCCcccccceEE
Confidence 44443 569999999985432 278999999988755443
No 146
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=55.08 E-value=14 Score=38.98 Aligned_cols=51 Identities=24% Similarity=0.623 Sum_probs=34.2
Q ss_pred eeeeCCCCCCCCCccCCcccCCCCCCCcEEEEEEeeccceeeEEEEeCCCCccceEEEccCCCCCccCCC
Q 019908 144 RNILCPKCKGKGSKSGALGKCYGCQGTGMKITTRQIGLGMIQQMQHVCPECRGAGEVISERDKCPQCKAN 213 (334)
Q Consensus 144 ~~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~ 213 (334)
....|..|.- ...|+.|... ...++.. -.-.|..|+-+..+ -..|+.|.+.
T Consensus 434 ~~l~C~~Cg~-------v~~Cp~Cd~~---lt~H~~~------~~L~CH~Cg~~~~~---p~~Cp~Cgs~ 484 (730)
T COG1198 434 PLLLCRDCGY-------IAECPNCDSP---LTLHKAT------GQLRCHYCGYQEPI---PQSCPECGSE 484 (730)
T ss_pred ceeecccCCC-------cccCCCCCcc---eEEecCC------CeeEeCCCCCCCCC---CCCCCCCCCC
Confidence 3578999953 3579999876 2222221 13689999887433 3799999987
No 147
>PF12434 Malate_DH: Malate dehydrogenase enzyme
Probab=53.00 E-value=16 Score=21.28 Aligned_cols=16 Identities=25% Similarity=0.511 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHhCC
Q 019908 27 DELKKAYRKAAMKNHP 42 (334)
Q Consensus 27 ~eik~ayr~la~~~hP 42 (334)
++.+.+.|+.|+.||-
T Consensus 11 ~~~r~~lR~AALeYHe 26 (28)
T PF12434_consen 11 EDKRAQLRQAALEYHE 26 (28)
T ss_pred HHHHHHHHHHHHHhcc
Confidence 7799999999999994
No 148
>PF03589 Antiterm: Antitermination protein; InterPro: IPR003222 This entry consists of antitermination proteins found in bacteriophages, such as protein Q from phage lambda, and some bacterial homologues. Protein Q positively regulates expression of the phage late gene operon by binding to the bacterial host RNA polymerase (RNAP) and modifying it. The modified RNAP transcribes through termination sites that otherwise prevent expression of the regulated genes [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent
Probab=52.41 E-value=2.7 Score=32.47 Aligned_cols=35 Identities=29% Similarity=0.667 Sum_probs=16.1
Q ss_pred cCCCCCCCcEEEEEEee--ccceeeEEEEeCCCCccceE
Q 019908 163 KCYGCQGTGMKITTRQI--GLGMIQQMQHVCPECRGAGE 199 (334)
Q Consensus 163 ~C~~C~G~G~~~~~~~~--~~g~~~~~~~~C~~C~G~G~ 199 (334)
.|..|+|.|..+-..+. .+|+-. -..|+.|.|.|.
T Consensus 7 ~c~~c~g~g~al~~~~s~~~~G~pv--fk~c~rcgg~G~ 43 (95)
T PF03589_consen 7 SCRRCAGDGAALDMKQSKAQFGVPV--FKDCERCGGRGY 43 (95)
T ss_pred CcCccCCcceeccHHHhHhccCCch--hhhhhhhcCCCC
Confidence 36666666644332211 112211 156666666665
No 149
>TIGR03655 anti_R_Lar restriction alleviation protein, Lar family. Restriction alleviation proteins provide a countermeasure to host cell restriction enzyme defense against foreign DNA such as phage or plasmids. This family consists of homologs to the phage antirestriction protein Lar, and most members belong to phage genomes or prophage regions of bacterial genomes.
Probab=52.19 E-value=25 Score=23.75 Aligned_cols=12 Identities=25% Similarity=0.631 Sum_probs=7.8
Q ss_pred cCCCCCCCcEEE
Q 019908 163 KCYGCQGTGMKI 174 (334)
Q Consensus 163 ~C~~C~G~G~~~ 174 (334)
+||-|+|+...+
T Consensus 3 PCPfCGg~~~~~ 14 (53)
T TIGR03655 3 PCPFCGGADVYL 14 (53)
T ss_pred CCCCCCCcceee
Confidence 577777766643
No 150
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=50.75 E-value=11 Score=39.38 Aligned_cols=49 Identities=27% Similarity=0.750 Sum_probs=30.7
Q ss_pred eeCCCCCCCCCccCCcccCCCCCCCcEEEEEEeeccceeeEEEEeCCCCccceEEEccCCCCCccCCC
Q 019908 146 ILCPKCKGKGSKSGALGKCYGCQGTGMKITTRQIGLGMIQQMQHVCPECRGAGEVISERDKCPQCKAN 213 (334)
Q Consensus 146 ~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~ 213 (334)
..|+.|+-.= +.....|+.|+.+-. ...|+.|+-. +......|+.|...
T Consensus 2 ~~Cp~Cg~~n--~~~akFC~~CG~~l~---------------~~~Cp~CG~~--~~~~~~fC~~CG~~ 50 (645)
T PRK14559 2 LICPQCQFEN--PNNNRFCQKCGTSLT---------------HKPCPQCGTE--VPVDEAHCPNCGAE 50 (645)
T ss_pred CcCCCCCCcC--CCCCccccccCCCCC---------------CCcCCCCCCC--CCcccccccccCCc
Confidence 4699996542 122246999954331 1579999865 23345789999865
No 151
>PRK00564 hypA hydrogenase nickel incorporation protein; Provisional
Probab=50.74 E-value=40 Score=27.00 Aligned_cols=31 Identities=16% Similarity=0.379 Sum_probs=15.7
Q ss_pred ceeeeCCCCCCCCCccCCc-ccCCCCCCCcEE
Q 019908 143 SRNILCPKCKGKGSKSGAL-GKCYGCQGTGMK 173 (334)
Q Consensus 143 ~~~~~C~~C~G~G~~~~~~-~~C~~C~G~G~~ 173 (334)
+-...|..|+-.-...... ..||.|++....
T Consensus 69 p~~~~C~~Cg~~~~~~~~~~~~CP~Cgs~~~~ 100 (117)
T PRK00564 69 KVELECKDCSHVFKPNALDYGVCEKCHSKNVI 100 (117)
T ss_pred CCEEEhhhCCCccccCCccCCcCcCCCCCceE
Confidence 3456688887443332222 236666655443
No 152
>PF14687 DUF4460: Domain of unknown function (DUF4460)
Probab=50.57 E-value=29 Score=27.63 Aligned_cols=41 Identities=27% Similarity=0.372 Sum_probs=30.5
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCCCCCh--------HHHHHHHHHHhhcC
Q 019908 22 KSATEDELKKAYRKAAMKNHPDKGGDP--------EKFKELGQAYEVLS 62 (334)
Q Consensus 22 ~~a~~~eik~ayr~la~~~hPd~~~~~--------~~f~~i~~Ay~~L~ 62 (334)
...+..+++.|.|..-++.|||.-.+. +-++.++.-.+.|.
T Consensus 4 r~~~~~~l~~aLr~Fy~~VHPDlF~~~P~~k~~Ne~SLk~Ln~~Ld~l~ 52 (112)
T PF14687_consen 4 RNLSSPDLRSALRPFYFAVHPDLFGQHPEEKQVNEESLKLLNSYLDSLK 52 (112)
T ss_pred hhhhhHHHHHHHHHHHHHhCCcccccChHHHHhhHHHHHHHHHHHHHHh
Confidence 345678899999999999999964321 45677776666665
No 153
>TIGR00757 RNaseEG ribonuclease, Rne/Rng family. The C-terminal half of RNase E (excluded from the seed alignment for this model) lacks ribonuclease activity but participates in mRNA degradation by organizing the degradosome.
Probab=50.17 E-value=7.2 Score=38.45 Aligned_cols=26 Identities=27% Similarity=0.753 Sum_probs=17.4
Q ss_pred EeeccceeeEEEEeCCCCccceEEEc
Q 019908 177 RQIGLGMIQQMQHVCPECRGAGEVIS 202 (334)
Q Consensus 177 ~~~~~g~~~~~~~~C~~C~G~G~~~~ 202 (334)
+..++.+...+..+||.|+|+|++.+
T Consensus 379 kr~~~sL~e~~~~~Cp~C~G~G~v~s 404 (414)
T TIGR00757 379 KRLRESLMEVLGTVCPHCSGTGIVKT 404 (414)
T ss_pred cccCcChHHHhcCCCCCCcCeeEEcc
Confidence 33455555556678888888888654
No 154
>PRK00464 nrdR transcriptional regulator NrdR; Validated
Probab=49.64 E-value=20 Score=30.32 Aligned_cols=35 Identities=20% Similarity=0.343 Sum_probs=19.8
Q ss_pred cCCCCCCCc-EEEEEEeeccceeeEEEEeCCCCccc
Q 019908 163 KCYGCQGTG-MKITTRQIGLGMIQQMQHVCPECRGA 197 (334)
Q Consensus 163 ~C~~C~G~G-~~~~~~~~~~g~~~~~~~~C~~C~G~ 197 (334)
.||.|+..- .++...-+.+|........|+.|+.+
T Consensus 2 ~cp~c~~~~~~~~~s~~~~~~~~~~~~~~c~~c~~~ 37 (154)
T PRK00464 2 RCPFCGHPDTRVIDSRPAEDGNAIRRRRECLACGKR 37 (154)
T ss_pred cCCCCCCCCCEeEeccccCCCCceeeeeeccccCCc
Confidence 577777766 44555555555333323567777654
No 155
>TIGR00100 hypA hydrogenase nickel insertion protein HypA. In Hpylori, hypA mutant abolished hydrogenase activity and decrease in urease activity. Nickel supplementation in media restored urease activity and partial hydrogenase activity. HypA probably involved in inserting Ni in enzymes.
Probab=49.00 E-value=16 Score=29.24 Aligned_cols=29 Identities=24% Similarity=0.463 Sum_probs=15.1
Q ss_pred eeeeCCCCCCCCCccCCcccCCCCCCCcE
Q 019908 144 RNILCPKCKGKGSKSGALGKCYGCQGTGM 172 (334)
Q Consensus 144 ~~~~C~~C~G~G~~~~~~~~C~~C~G~G~ 172 (334)
-...|..|+-.-........||.|++...
T Consensus 69 ~~~~C~~Cg~~~~~~~~~~~CP~Cgs~~~ 97 (115)
T TIGR00100 69 VECECEDCSEEVSPEIDLYRCPKCHGIML 97 (115)
T ss_pred cEEEcccCCCEEecCCcCccCcCCcCCCc
Confidence 34568888743333222344666665553
No 156
>PF14353 CpXC: CpXC protein
Probab=47.02 E-value=8.3 Score=31.18 Aligned_cols=14 Identities=21% Similarity=0.534 Sum_probs=10.1
Q ss_pred EEeCCCCccceEEE
Q 019908 188 QHVCPECRGAGEVI 201 (334)
Q Consensus 188 ~~~C~~C~G~G~~~ 201 (334)
..+||.|+....+-
T Consensus 38 ~~~CP~Cg~~~~~~ 51 (128)
T PF14353_consen 38 SFTCPSCGHKFRLE 51 (128)
T ss_pred EEECCCCCCceecC
Confidence 47888888877643
No 157
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=45.79 E-value=8.9 Score=24.02 Aligned_cols=11 Identities=36% Similarity=0.963 Sum_probs=6.6
Q ss_pred eeCCCCCCCCC
Q 019908 146 ILCPKCKGKGS 156 (334)
Q Consensus 146 ~~C~~C~G~G~ 156 (334)
+.||+|+..-.
T Consensus 3 i~CP~C~~~f~ 13 (37)
T PF13719_consen 3 ITCPNCQTRFR 13 (37)
T ss_pred EECCCCCceEE
Confidence 45777765544
No 158
>PRK14890 putative Zn-ribbon RNA-binding protein; Provisional
Probab=45.77 E-value=17 Score=25.40 Aligned_cols=21 Identities=29% Similarity=0.797 Sum_probs=12.0
Q ss_pred EeCCCCccceEEEccCCCCCccCCC
Q 019908 189 HVCPECRGAGEVISERDKCPQCKAN 213 (334)
Q Consensus 189 ~~C~~C~G~G~~~~~~~~C~~C~G~ 213 (334)
..|..|.=.+. ...|+.|.-.
T Consensus 37 ~RC~~CRk~~~----~Y~CP~CGF~ 57 (59)
T PRK14890 37 YRCEKCRKQSN----PYTCPKCGFE 57 (59)
T ss_pred eechhHHhcCC----ceECCCCCCc
Confidence 34666665553 3567777643
No 159
>PF07092 DUF1356: Protein of unknown function (DUF1356); InterPro: IPR009790 This family consists of several hypothetical mammalian proteins of around 250 residues in length. The function of this family is unknown.
Probab=45.68 E-value=12 Score=33.89 Aligned_cols=12 Identities=25% Similarity=0.133 Sum_probs=8.0
Q ss_pred CCccEEEEEEEE
Q 019908 319 TSVNLYLHEYCF 330 (334)
Q Consensus 319 ~~GdL~v~~~V~ 330 (334)
.--+|+|++++.
T Consensus 200 kvH~i~l~~Q~T 211 (238)
T PF07092_consen 200 KVHNIVLHMQGT 211 (238)
T ss_pred eEEEEEEEEEEE
Confidence 347888877654
No 160
>PRK12336 translation initiation factor IF-2 subunit beta; Provisional
Probab=45.21 E-value=1.1e+02 Score=26.99 Aligned_cols=34 Identities=21% Similarity=0.285 Sum_probs=18.7
Q ss_pred EEEEEeccCccCCcEEEEe-cCcCCCCCCCCcCEE
Q 019908 221 VLEVHVEKGMQHGQKIAFE-GQADEAPDTITGDIV 254 (334)
Q Consensus 221 ~~~v~Ip~G~~~G~~i~l~-g~G~~~~~~~~GDL~ 254 (334)
.+++.|..-...|+-+.-. |.-...++..+||.+
T Consensus 150 ~~~v~Ie~l~~~G~GVak~~g~~vfV~galpGE~V 184 (201)
T PRK12336 150 TYEVEITGTGRKGDGVAKKGKYTIFVPGAKKGEVV 184 (201)
T ss_pred EEEEEEEEccCCCceEEEECCEEEEeCCCCCCCEE
Confidence 4566666666666665422 211123566778874
No 161
>PF04246 RseC_MucC: Positive regulator of sigma(E), RseC/MucC; InterPro: IPR007359 This bacterial family of integral membrane proteins represents a positive regulator of the sigma(E) transcription factor, namely RseC/MucC. The sigma(E) transcription factor is up-regulated by cell envelope protein misfolding, and regulates the expression of genes that are collectively termed ECF (devoted to Extra-Cellular Functions) []. In Pseudomonas aeruginosa, derepression of sigma(E) is associated with the alginate-overproducing phenotype characteristic of chronic respiratory tract colonization in cystic fibrosis patients. The mechanism by which RseC/MucC positively regulates the sigma(E) transcription factor is unknown. RseC is also thought to have a role in thiamine biosynthesis in Salmonella typhimurium []. In addition, this family also includes an N-terminal part of RnfF, a Rhodobacter capsulatus protein, of unknown function, that is essential for nitrogen fixation. This protein also contains a domain found in ApbE protein IPR003374 from INTERPRO, which is itself involved in thiamine biosynthesis.
Probab=45.18 E-value=30 Score=28.16 Aligned_cols=23 Identities=13% Similarity=0.170 Sum_probs=17.2
Q ss_pred eEEEEEEeccCccCCcEEEEecC
Q 019908 219 KKVLEVHVEKGMQHGQKIAFEGQ 241 (334)
Q Consensus 219 ~~~~~v~Ip~G~~~G~~i~l~g~ 241 (334)
...+++.-+.+.+.||.+.+.-.
T Consensus 41 ~~~~~~~~~~~~~~GD~V~v~i~ 63 (135)
T PF04246_consen 41 PITFRAPNPIGAKVGDRVEVEIP 63 (135)
T ss_pred cEEEEecCCCCCCCCCEEEEEec
Confidence 35677777888888888887643
No 162
>COG5552 Uncharacterized conserved protein [Function unknown]
Probab=44.87 E-value=74 Score=23.31 Aligned_cols=35 Identities=17% Similarity=0.087 Sum_probs=27.7
Q ss_pred ccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC
Q 019908 13 KYYEILGVSKSATEDELKKAYRKAAMKNHPDKGGD 47 (334)
Q Consensus 13 ~~y~iLgv~~~a~~~eik~ayr~la~~~hPd~~~~ 47 (334)
|.-.+++++|-|+..||+.|-++...|..=-..|+
T Consensus 4 NIk~LfnfdPPAT~~EvrdAAlQfVRKlSGtT~PS 38 (88)
T COG5552 4 NIKELFNFDPPATPVEVRDAALQFVRKLSGTTHPS 38 (88)
T ss_pred chHHHhCCCCCCCcHHHHHHHHHHHHHhcCCCCcc
Confidence 44568899999999999999888888775555554
No 163
>PRK05580 primosome assembly protein PriA; Validated
Probab=43.89 E-value=23 Score=37.21 Aligned_cols=51 Identities=22% Similarity=0.610 Sum_probs=31.6
Q ss_pred eeeCCCCCCCCCccCCcccCCCCCCCcEEEEEEeeccceeeEEEEeCCCCccceEEEccCCCCCccCCCc
Q 019908 145 NILCPKCKGKGSKSGALGKCYGCQGTGMKITTRQIGLGMIQQMQHVCPECRGAGEVISERDKCPQCKANK 214 (334)
Q Consensus 145 ~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g 214 (334)
.+.|..|.- ...|+.|.+. .... ... -.-.|..|+-+-. ....|+.|.+..
T Consensus 381 ~~~C~~Cg~-------~~~C~~C~~~-l~~h-~~~-------~~l~Ch~Cg~~~~---~~~~Cp~Cg~~~ 431 (679)
T PRK05580 381 FLLCRDCGW-------VAECPHCDAS-LTLH-RFQ-------RRLRCHHCGYQEP---IPKACPECGSTD 431 (679)
T ss_pred ceEhhhCcC-------ccCCCCCCCc-eeEE-CCC-------CeEECCCCcCCCC---CCCCCCCCcCCe
Confidence 467888863 3579999872 2221 111 1257999986533 237899998764
No 164
>PRK12380 hydrogenase nickel incorporation protein HybF; Provisional
Probab=38.48 E-value=41 Score=26.70 Aligned_cols=6 Identities=33% Similarity=1.326 Sum_probs=3.1
Q ss_pred cCCCCC
Q 019908 163 KCYGCQ 168 (334)
Q Consensus 163 ~C~~C~ 168 (334)
.|..|+
T Consensus 72 ~C~~Cg 77 (113)
T PRK12380 72 WCWDCS 77 (113)
T ss_pred EcccCC
Confidence 355554
No 165
>TIGR00100 hypA hydrogenase nickel insertion protein HypA. In Hpylori, hypA mutant abolished hydrogenase activity and decrease in urease activity. Nickel supplementation in media restored urease activity and partial hydrogenase activity. HypA probably involved in inserting Ni in enzymes.
Probab=37.69 E-value=46 Score=26.51 Aligned_cols=10 Identities=40% Similarity=1.016 Sum_probs=5.3
Q ss_pred EeCCCCccce
Q 019908 189 HVCPECRGAG 198 (334)
Q Consensus 189 ~~C~~C~G~G 198 (334)
..||.|++..
T Consensus 87 ~~CP~Cgs~~ 96 (115)
T TIGR00100 87 YRCPKCHGIM 96 (115)
T ss_pred ccCcCCcCCC
Confidence 3466665544
No 166
>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2). A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o
Probab=37.20 E-value=1.5e+02 Score=22.94 Aligned_cols=55 Identities=13% Similarity=0.062 Sum_probs=35.1
Q ss_pred EEEEEEEeCCCceeecCcEEEEEecCHHHHhCCCeEEEecCCCCeEEEEcCCCceecCCcccCCCCCccEEEEEEEEE
Q 019908 254 VFILQLKEHPKFKRKFDDLYVDHTLSLTEALCGFQFALTHLDGRQLLIKSNPGEIIKPGIYFDNFTSVNLYLHEYCFL 331 (334)
Q Consensus 254 ~v~i~v~~~~~f~r~g~dL~~~~~I~l~~al~G~~~~i~tldG~~l~v~i~~g~~i~~g~~~~~~~~GdL~v~~~V~~ 331 (334)
.+.|.|..+..+ .++++-+..+++.+...|.. .....+- .+..+|.|.|+|.+++
T Consensus 65 ~l~v~v~d~d~~---~~~~iG~~~~~l~~l~~g~~----------~~~~~~L----------~~~~~g~l~~~~~~~~ 119 (119)
T cd04036 65 VLELTVMDEDYV---MDDHLGTVLFDVSKLKLGEK----------VRVTFSL----------NPQGKEELEVEFLLEL 119 (119)
T ss_pred EEEEEEEECCCC---CCcccEEEEEEHHHCCCCCc----------EEEEEEC----------CCCCCceEEEEEEeeC
Confidence 466777776655 67899999999988655432 2222210 1223688888888764
No 167
>PRK11712 ribonuclease G; Provisional
Probab=36.97 E-value=12 Score=37.61 Aligned_cols=26 Identities=23% Similarity=0.558 Sum_probs=16.9
Q ss_pred EeeccceeeEEEEeCCCCccceEEEc
Q 019908 177 RQIGLGMIQQMQHVCPECRGAGEVIS 202 (334)
Q Consensus 177 ~~~~~g~~~~~~~~C~~C~G~G~~~~ 202 (334)
+..++.+...+..+||.|+|+|++.+
T Consensus 391 kR~r~sl~~~l~~~Cp~C~G~G~v~s 416 (489)
T PRK11712 391 KRTRESLEHVLCGECPTCHGRGTVKT 416 (489)
T ss_pred cccCCChHHHhcCCCCCCCCCCCcCC
Confidence 34455555556678888888887654
No 168
>PF01155 HypA: Hydrogenase expression/synthesis hypA family; InterPro: IPR000688 Bacterial membrane-bound nickel-dependent hydrogenases requires a number of accessory proteins which are involved in their maturation. The exact role of these proteins is not yet clear, but some seem to be required for the incorporation of the nickel ions []. One of these proteins is generally known as hypA. It is a protein of about 12 to 14 kDa that contains, in its C-terminal region, four conserved cysteines that form a zinc-finger like motif. Escherichia coli has two proteins that belong to this family, hypA and hybF. A homologue, MJ0214, has also been found in a number of archaeal species, including the genome of Methanocaldococcus jannaschii (Methanococcus jannaschii).; GO: 0016151 nickel ion binding, 0006464 protein modification process; PDB: 2KDX_A 3A44_D 3A43_B.
Probab=36.44 E-value=17 Score=28.92 Aligned_cols=32 Identities=16% Similarity=0.277 Sum_probs=17.2
Q ss_pred ceeeeCCCCCCCCCccCCcccCCCCCCCcEEE
Q 019908 143 SRNILCPKCKGKGSKSGALGKCYGCQGTGMKI 174 (334)
Q Consensus 143 ~~~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~ 174 (334)
+-...|..|.-..........||.|++....+
T Consensus 68 p~~~~C~~Cg~~~~~~~~~~~CP~Cgs~~~~i 99 (113)
T PF01155_consen 68 PARARCRDCGHEFEPDEFDFSCPRCGSPDVEI 99 (113)
T ss_dssp --EEEETTTS-EEECHHCCHH-SSSSSS-EEE
T ss_pred CCcEECCCCCCEEecCCCCCCCcCCcCCCcEE
Confidence 34466888877665544445677777776443
No 169
>PF01155 HypA: Hydrogenase expression/synthesis hypA family; InterPro: IPR000688 Bacterial membrane-bound nickel-dependent hydrogenases requires a number of accessory proteins which are involved in their maturation. The exact role of these proteins is not yet clear, but some seem to be required for the incorporation of the nickel ions []. One of these proteins is generally known as hypA. It is a protein of about 12 to 14 kDa that contains, in its C-terminal region, four conserved cysteines that form a zinc-finger like motif. Escherichia coli has two proteins that belong to this family, hypA and hybF. A homologue, MJ0214, has also been found in a number of archaeal species, including the genome of Methanocaldococcus jannaschii (Methanococcus jannaschii).; GO: 0016151 nickel ion binding, 0006464 protein modification process; PDB: 2KDX_A 3A44_D 3A43_B.
Probab=36.23 E-value=21 Score=28.31 Aligned_cols=26 Identities=23% Similarity=0.459 Sum_probs=11.7
Q ss_pred EeCCCCccceEEEccCCCCCccCCCc
Q 019908 189 HVCPECRGAGEVISERDKCPQCKANK 214 (334)
Q Consensus 189 ~~C~~C~G~G~~~~~~~~C~~C~G~g 214 (334)
..|..|+-...+......||.|.+..
T Consensus 71 ~~C~~Cg~~~~~~~~~~~CP~Cgs~~ 96 (113)
T PF01155_consen 71 ARCRDCGHEFEPDEFDFSCPRCGSPD 96 (113)
T ss_dssp EEETTTS-EEECHHCCHH-SSSSSS-
T ss_pred EECCCCCCEEecCCCCCCCcCCcCCC
Confidence 45555555444333334566666553
No 170
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=35.68 E-value=35 Score=34.56 Aligned_cols=53 Identities=23% Similarity=0.499 Sum_probs=32.2
Q ss_pred eeeCCCCCCCCCccCCcccCCCCCCCcEEEEEEeeccceeeEEEEeCCCCccceEEEccCCCCCccCCCcee
Q 019908 145 NILCPKCKGKGSKSGALGKCYGCQGTGMKITTRQIGLGMIQQMQHVCPECRGAGEVISERDKCPQCKANKVT 216 (334)
Q Consensus 145 ~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~ 216 (334)
.+.|..|.- ...|+.|.+.= ... +.. -.-.|..|+-+-. ....|+.|.+....
T Consensus 213 ~~~C~~Cg~-------~~~C~~C~~~l-~~h-~~~-------~~l~Ch~Cg~~~~---~~~~Cp~C~s~~l~ 265 (505)
T TIGR00595 213 NLLCRSCGY-------ILCCPNCDVSL-TYH-KKE-------GKLRCHYCGYQEP---IPKTCPQCGSEDLV 265 (505)
T ss_pred eeEhhhCcC-------ccCCCCCCCce-EEe-cCC-------CeEEcCCCcCcCC---CCCCCCCCCCCeeE
Confidence 467998863 35799997531 111 111 1257999975533 23789999876433
No 171
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=35.58 E-value=30 Score=32.70 Aligned_cols=30 Identities=30% Similarity=0.276 Sum_probs=14.0
Q ss_pred HHHHHHHHHHhCCCCCCCh--HHHHHHHHHHh-hcCC
Q 019908 30 KKAYRKAAMKNHPDKGGDP--EKFKELGQAYE-VLSD 63 (334)
Q Consensus 30 k~ayr~la~~~hPd~~~~~--~~f~~i~~Ay~-~L~d 63 (334)
.+.+|+||. -||- .+ .-+..|.+|-. +|.+
T Consensus 38 A~Rl~~LA~-~~pl---~dYL~f~A~i~~aQ~~~l~~ 70 (309)
T PRK03564 38 AERLRQLAE-NNPL---GDYLRFAALIAEAQEVVLYD 70 (309)
T ss_pred HHHHHHHHh-cCCh---HHHHHHHHHHHHHHHHHHHh
Confidence 344556663 2552 12 34455666644 3443
No 172
>PF12387 Peptidase_C74: Pestivirus NS2 peptidase; InterPro: IPR022120 The pestivirus NS2 peptidase is responsible for single cleavage between NS2 and NS3 of the Bovine viral diarrhea virus 1 polyprotein, a cleavage that is correlated with cytopathogenicity []. The peptidase is activated by its interaction with 'J-domain protein interacting with viral protein' - Jiv. ; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0004252 serine-type endopeptidase activity, 0016817 hydrolase activity, acting on acid anhydrides, 0017111 nucleoside-triphosphatase activity, 0070008 serine-type exopeptidase activity
Probab=34.91 E-value=21 Score=30.52 Aligned_cols=26 Identities=42% Similarity=0.921 Sum_probs=15.3
Q ss_pred eeCCCCCCCCCccCCcccCCCCCCCcEEE
Q 019908 146 ILCPKCKGKGSKSGALGKCYGCQGTGMKI 174 (334)
Q Consensus 146 ~~C~~C~G~G~~~~~~~~C~~C~G~G~~~ 174 (334)
+.|..|.+.-.+. .+||+|++.|..+
T Consensus 163 ilCtvCe~r~w~g---~~CPKCGr~G~pi 188 (200)
T PF12387_consen 163 ILCTVCEGREWKG---GNCPKCGRHGKPI 188 (200)
T ss_pred EEEeeeecCccCC---CCCCcccCCCCCe
Confidence 5677777665432 2466666666543
No 173
>PF10041 DUF2277: Uncharacterized conserved protein (DUF2277); InterPro: IPR018735 Members of this family of hypothetical bacterial proteins have no known function.
Probab=34.08 E-value=1.3e+02 Score=22.16 Aligned_cols=40 Identities=18% Similarity=0.164 Sum_probs=29.9
Q ss_pred cccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCh---HHHHH
Q 019908 14 YYEILGVSKSATEDELKKAYRKAAMKNHPDKGGDP---EKFKE 53 (334)
Q Consensus 14 ~y~iLgv~~~a~~~eik~ayr~la~~~hPd~~~~~---~~f~~ 53 (334)
--.+.++.|-|+.+||..|=.+...|..=-..|+. +.|.+
T Consensus 5 I~~L~~fePpaT~~EI~aAAlQyVRKvSG~~~Ps~an~eaF~~ 47 (78)
T PF10041_consen 5 IKTLRNFEPPATDEEIRAAALQYVRKVSGFRKPSAANAEAFDR 47 (78)
T ss_pred hhhhcCCCCCCCHHHHHHHHHHHHHHHccCCCcchhhHHHHHH
Confidence 33566888999999999999999888776665543 44543
No 174
>PRK00488 pheS phenylalanyl-tRNA synthetase subunit alpha; Validated
Probab=33.33 E-value=34 Score=32.81 Aligned_cols=22 Identities=50% Similarity=1.073 Sum_probs=14.4
Q ss_pred eeeeCCCCCCCCCccCCcccCCCCCCCcEE
Q 019908 144 RNILCPKCKGKGSKSGALGKCYGCQGTGMK 173 (334)
Q Consensus 144 ~~~~C~~C~G~G~~~~~~~~C~~C~G~G~~ 173 (334)
--+.|..|+|.| |+.|+++|.+
T Consensus 259 vdv~~~~~~g~g--------c~~ck~~~Wi 280 (339)
T PRK00488 259 VDVSCFKCGGKG--------CRVCKGTGWL 280 (339)
T ss_pred EEEEEeccCCCc--------ccccCCCCce
Confidence 335677777665 6677777754
No 175
>PF08792 A2L_zn_ribbon: A2L zinc ribbon domain; InterPro: IPR014900 This zinc ribbon protein is found associated with some viral A2L transcription factors [].
Probab=32.97 E-value=45 Score=20.38 Aligned_cols=11 Identities=45% Similarity=1.111 Sum_probs=6.0
Q ss_pred cCCCCCCCcEE
Q 019908 163 KCYGCQGTGMK 173 (334)
Q Consensus 163 ~C~~C~G~G~~ 173 (334)
.|+.|++.|.+
T Consensus 5 ~C~~C~~~~i~ 15 (33)
T PF08792_consen 5 KCSKCGGNGIV 15 (33)
T ss_pred EcCCCCCCeEE
Confidence 45556655544
No 176
>PF14205 Cys_rich_KTR: Cysteine-rich KTR
Probab=32.88 E-value=76 Score=21.83 Aligned_cols=12 Identities=33% Similarity=1.002 Sum_probs=6.4
Q ss_pred CCCccCCCceeE
Q 019908 206 KCPQCKANKVTQ 217 (334)
Q Consensus 206 ~C~~C~G~g~~~ 217 (334)
.|+.|+-.-.+.
T Consensus 30 yCpKCK~EtlI~ 41 (55)
T PF14205_consen 30 YCPKCKQETLID 41 (55)
T ss_pred cCCCCCceEEEE
Confidence 566666544433
No 177
>PF13453 zf-TFIIB: Transcription factor zinc-finger
Probab=32.85 E-value=42 Score=21.31 Aligned_cols=8 Identities=63% Similarity=1.672 Sum_probs=5.0
Q ss_pred EeCCCCcc
Q 019908 189 HVCPECRG 196 (334)
Q Consensus 189 ~~C~~C~G 196 (334)
..|+.|+|
T Consensus 20 d~C~~C~G 27 (41)
T PF13453_consen 20 DVCPSCGG 27 (41)
T ss_pred EECCCCCe
Confidence 45666665
No 178
>PRK14873 primosome assembly protein PriA; Provisional
Probab=32.42 E-value=48 Score=34.86 Aligned_cols=51 Identities=22% Similarity=0.571 Sum_probs=32.4
Q ss_pred eeeCCCCCCCCCccCCcccCCCCCCCcEEEEEEeeccceeeEEEEeCCCCccceEEEccCCCCCccCCCce
Q 019908 145 NILCPKCKGKGSKSGALGKCYGCQGTGMKITTRQIGLGMIQQMQHVCPECRGAGEVISERDKCPQCKANKV 215 (334)
Q Consensus 145 ~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~ 215 (334)
...|..|. ....|+.|.+.=..- ... -.-.|..|+-.- . ...|+.|.+..+
T Consensus 383 ~l~C~~Cg-------~~~~C~~C~~~L~~h--~~~-------~~l~Ch~CG~~~--~--p~~Cp~Cgs~~l 433 (665)
T PRK14873 383 SLACARCR-------TPARCRHCTGPLGLP--SAG-------GTPRCRWCGRAA--P--DWRCPRCGSDRL 433 (665)
T ss_pred eeEhhhCc-------CeeECCCCCCceeEe--cCC-------CeeECCCCcCCC--c--CccCCCCcCCcc
Confidence 36799995 335799998643211 111 125799998652 2 379999987643
No 179
>PF08273 Prim_Zn_Ribbon: Zinc-binding domain of primase-helicase; InterPro: IPR013237 This entry is represented by bacteriophage T7 Gp4. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry represents a zinc binding domain found in the N-terminal region of the bacteriophage T7 Gp4 and P4 alpha protein. P4 is a multifunctional protein with origin recognition, helicase and primase activities [, , ].; GO: 0003896 DNA primase activity, 0004386 helicase activity, 0008270 zinc ion binding; PDB: 1NUI_B.
Probab=32.40 E-value=21 Score=22.92 Aligned_cols=11 Identities=45% Similarity=0.918 Sum_probs=4.4
Q ss_pred eeCCCCCCCCC
Q 019908 146 ILCPKCKGKGS 156 (334)
Q Consensus 146 ~~C~~C~G~G~ 156 (334)
..||.|.|+..
T Consensus 4 ~pCP~CGG~Dr 14 (40)
T PF08273_consen 4 GPCPICGGKDR 14 (40)
T ss_dssp E--TTTT-TTT
T ss_pred CCCCCCcCccc
Confidence 45666665554
No 180
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=32.36 E-value=21 Score=22.19 Aligned_cols=11 Identities=45% Similarity=1.075 Sum_probs=6.6
Q ss_pred eeCCCCCCCCC
Q 019908 146 ILCPKCKGKGS 156 (334)
Q Consensus 146 ~~C~~C~G~G~ 156 (334)
+.|+.|+-.=.
T Consensus 3 i~Cp~C~~~y~ 13 (36)
T PF13717_consen 3 ITCPNCQAKYE 13 (36)
T ss_pred EECCCCCCEEe
Confidence 56777765443
No 181
>COG0551 TopA Zn-finger domain associated with topoisomerase type I [DNA replication, recombination, and repair]
Probab=30.75 E-value=1.6e+02 Score=24.03 Aligned_cols=50 Identities=22% Similarity=0.407 Sum_probs=27.3
Q ss_pred cccCCCCCCCcEEEEEEeeccceeeEEEEeCCCCccceEEEccCCCCCccCC
Q 019908 161 LGKCYGCQGTGMKITTRQIGLGMIQQMQHVCPECRGAGEVISERDKCPQCKA 212 (334)
Q Consensus 161 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G 212 (334)
...|+.|+-.-.+......+ +.+ -.-..||.|.-.-........|+.|..
T Consensus 60 ~~~Cp~C~~~~~~~k~~~~~-~~f-~~~~~~Pkc~~~~~~~~~~~~cp~c~~ 109 (140)
T COG0551 60 GVKCPKCGKGLLVLKKGRFG-KNF-LGCSNYPKCRFTEKPKPKEKKCPKCGS 109 (140)
T ss_pred ceeCCCCCCCceEEEeccCC-ceE-EeecCCCcCceeecCCcccccCCcCCC
Confidence 35677777522222221111 111 123678888876655555677999987
No 182
>smart00276 GLECT Galectin. Galectin - galactose-binding lectin
Probab=30.65 E-value=73 Score=25.55 Aligned_cols=40 Identities=18% Similarity=0.268 Sum_probs=27.2
Q ss_pred EEEeccCccCCcEEEEecCcCCCCC-------CCCcCEEEEEEEEeC
Q 019908 223 EVHVEKGMQHGQKIAFEGQADEAPD-------TITGDIVFILQLKEH 262 (334)
Q Consensus 223 ~v~Ip~G~~~G~~i~l~g~G~~~~~-------~~~GDL~v~i~v~~~ 262 (334)
+..||.|+.+|+.|.+.|.=...++ ...+|+.+.+++..+
T Consensus 2 ~~~lp~~l~~G~~i~i~G~~~~~~~~F~inl~~~~~di~lH~n~rf~ 48 (128)
T smart00276 2 TLPIPGGLKPGQTLTVRGIVLPDAKRFSINLLTGGDDIALHFNPRFN 48 (128)
T ss_pred cccCCCCCCCCCEEEEEEEECCCCCEEEEEeecCCCCEEEEEeccCC
Confidence 4578999999999999986654321 112566666665544
No 183
>PRK03681 hypA hydrogenase nickel incorporation protein; Validated
Probab=30.50 E-value=43 Score=26.67 Aligned_cols=28 Identities=18% Similarity=0.417 Sum_probs=12.8
Q ss_pred eeeeCCCCCCCCCccCCc-ccCCCCCCCc
Q 019908 144 RNILCPKCKGKGSKSGAL-GKCYGCQGTG 171 (334)
Q Consensus 144 ~~~~C~~C~G~G~~~~~~-~~C~~C~G~G 171 (334)
-...|..|+-.=...... ..||.|++..
T Consensus 69 ~~~~C~~Cg~~~~~~~~~~~~CP~Cgs~~ 97 (114)
T PRK03681 69 AECWCETCQQYVTLLTQRVRRCPQCHGDM 97 (114)
T ss_pred cEEEcccCCCeeecCCccCCcCcCcCCCC
Confidence 345677776332221111 3355555544
No 184
>PF13248 zf-ribbon_3: zinc-ribbon domain
Probab=30.01 E-value=21 Score=20.33 Aligned_cols=21 Identities=33% Similarity=0.993 Sum_probs=10.6
Q ss_pred EeCCCCccceEEEccCCCCCccC
Q 019908 189 HVCPECRGAGEVISERDKCPQCK 211 (334)
Q Consensus 189 ~~C~~C~G~G~~~~~~~~C~~C~ 211 (334)
..|+.|+- .+......|+.|.
T Consensus 3 ~~Cp~Cg~--~~~~~~~fC~~CG 23 (26)
T PF13248_consen 3 MFCPNCGA--EIDPDAKFCPNCG 23 (26)
T ss_pred CCCcccCC--cCCcccccChhhC
Confidence 34555554 2233346666664
No 185
>PF11023 DUF2614: Protein of unknown function (DUF2614); InterPro: IPR020912 This entry describes proteins of unknown function, which are thought to be membrane proteins.; GO: 0005887 integral to plasma membrane
Probab=29.96 E-value=26 Score=27.84 Aligned_cols=26 Identities=31% Similarity=0.765 Sum_probs=18.2
Q ss_pred EEeCCCCccceEEEccCCCCCccCCC
Q 019908 188 QHVCPECRGAGEVISERDKCPQCKAN 213 (334)
Q Consensus 188 ~~~C~~C~G~G~~~~~~~~C~~C~G~ 213 (334)
+..||.|+-.-+.....+.|..|+-.
T Consensus 69 ~V~CP~C~K~TKmLGr~D~CM~C~~p 94 (114)
T PF11023_consen 69 QVECPNCGKQTKMLGRVDACMHCKEP 94 (114)
T ss_pred eeECCCCCChHhhhchhhccCcCCCc
Confidence 46788887665555566888888754
No 186
>PF08271 TF_Zn_Ribbon: TFIIB zinc-binding; InterPro: IPR013137 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger motif found in transcription factor IIB (TFIIB). In eukaryotes the initiation of transcription of protein encoding genes by the polymerase II complexe (Pol II) is modulated by general and specific transcription factors. The general transcription factors operate through common promoters elements (such as the TATA box). At least seven different proteins associate to form the general transcription factors: TFIIA, -IIB, -IID, -IIE, -IIF, -IIG, and -IIH []. TFIIB and TFIID are responsible for promoter recognition and interaction with pol II; together with Pol II, they form a minimal initiation complex capable of transcription under certain conditions. The TATA box of a Pol II promoter is bound in the initiation complex by the TBP subunit of TFIID, which bends the DNA around the C-terminal domain of TFIIB whereas the N-terminal zinc finger of TFIIB interacts with Pol II [, ]. The TFIIB zinc finger adopts a zinc ribbon fold characterised by two beta-hairpins forming two structurally similar zinc-binding sub-sites []. The zinc finger contacts the rbp1 subunit of Pol II through its dock domain, a conserved region of about 70 amino acids located close to the polymerase active site []. In the Pol II complex this surface is located near the RNA exit groove. Interestingly this sequence is best conserved in the three polymerases that utilise a TFIIB-like general transcription factor (Pol II, Pol III, and archaeal RNA polymerase) but not in Pol I []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1VD4_A 1PFT_A 3K1F_M 3K7A_M 1RO4_A 1RLY_A 1DL6_A.
Probab=29.31 E-value=33 Score=22.00 Aligned_cols=9 Identities=33% Similarity=0.822 Sum_probs=5.3
Q ss_pred cCCCCCCCc
Q 019908 163 KCYGCQGTG 171 (334)
Q Consensus 163 ~C~~C~G~G 171 (334)
.|+.|+.+-
T Consensus 2 ~Cp~Cg~~~ 10 (43)
T PF08271_consen 2 KCPNCGSKE 10 (43)
T ss_dssp SBTTTSSSE
T ss_pred CCcCCcCCc
Confidence 466666655
No 187
>smart00440 ZnF_C2C2 C2C2 Zinc finger. Nucleic-acid-binding motif in transcriptional elongation factor TFIIS and RNA polymerases.
Probab=28.13 E-value=1.2e+02 Score=19.26 Aligned_cols=17 Identities=18% Similarity=0.290 Sum_probs=9.8
Q ss_pred cCCCCCCCcEEEEEEee
Q 019908 163 KCYGCQGTGMKITTRQI 179 (334)
Q Consensus 163 ~C~~C~G~G~~~~~~~~ 179 (334)
.|+.|+....+....|+
T Consensus 2 ~Cp~C~~~~a~~~q~Q~ 18 (40)
T smart00440 2 PCPKCGNREATFFQLQT 18 (40)
T ss_pred cCCCCCCCeEEEEEEcc
Confidence 47777666655544443
No 188
>PF04967 HTH_10: HTH DNA binding domain; InterPro: IPR007050 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. This entry represents the HTH DNA binding domain found in Halobacterium salinarium (Halobacterium halobium) and described as a putative bacterio-opsin activator.
Probab=27.28 E-value=18 Score=24.71 Aligned_cols=32 Identities=41% Similarity=0.550 Sum_probs=26.7
Q ss_pred CCCCCccccccccCCCCCCCHHHHHHHHHHHH
Q 019908 6 PRRSNNTKYYEILGVSKSATEDELKKAYRKAA 37 (334)
Q Consensus 6 ~~~~~~~~~y~iLgv~~~a~~~eik~ayr~la 37 (334)
||...-.+.=+.|||++.+-.+-|++|-+++.
T Consensus 21 PR~~tl~elA~~lgis~st~~~~LRrae~kli 52 (53)
T PF04967_consen 21 PRRITLEELAEELGISKSTVSEHLRRAERKLI 52 (53)
T ss_pred CCcCCHHHHHHHhCCCHHHHHHHHHHHHHHHh
Confidence 66667777778899999998889999998875
No 189
>COG1530 CafA Ribonucleases G and E [Translation, ribosomal structure and biogenesis]
Probab=26.72 E-value=76 Score=32.02 Aligned_cols=26 Identities=27% Similarity=0.735 Sum_probs=20.5
Q ss_pred EeeccceeeEEEEeCCCCccceEEEc
Q 019908 177 RQIGLGMIQQMQHVCPECRGAGEVIS 202 (334)
Q Consensus 177 ~~~~~g~~~~~~~~C~~C~G~G~~~~ 202 (334)
...++.+......+|+.|.|+|.+..
T Consensus 384 ~R~~~sl~~~~~~~cp~c~G~g~v~~ 409 (487)
T COG1530 384 KRTRESLLEVLSERCPGCKGTGHVRS 409 (487)
T ss_pred EecCCCCceeeeeECCCceeeEEEec
Confidence 34466777778899999999998775
No 190
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=25.90 E-value=46 Score=30.55 Aligned_cols=32 Identities=28% Similarity=0.440 Sum_probs=26.0
Q ss_pred EEecCHHHHhCC-CeEEEecCCCCeEEEEcCCC
Q 019908 275 DHTLSLTEALCG-FQFALTHLDGRQLLIKSNPG 306 (334)
Q Consensus 275 ~~~I~l~~al~G-~~~~i~tldG~~l~v~i~~g 306 (334)
+.+|-|+||+.| +...|++.|++.=.+.|.|.
T Consensus 19 DhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpd 51 (311)
T KOG0315|consen 19 DHTIRFWQALTGICSRTIQHPDSQVNRLEITPD 51 (311)
T ss_pred cceeeeeehhcCeEEEEEecCccceeeEEEcCC
Confidence 468899999999 68999999998656666553
No 191
>KOG0527 consensus HMG-box transcription factor [Transcription]
Probab=25.76 E-value=62 Score=30.92 Aligned_cols=41 Identities=32% Similarity=0.519 Sum_probs=33.1
Q ss_pred HHHHHHHHHhCCCCCCChHHHHHHHHHHhhcCCCcccchhcc
Q 019908 31 KAYRKAAMKNHPDKGGDPEKFKELGQAYEVLSDPEKRDIYDQ 72 (334)
Q Consensus 31 ~ayr~la~~~hPd~~~~~~~f~~i~~Ay~~L~d~~~r~~YD~ 72 (334)
+..|+...+-.||-+ +.|.-|+|-.-|..|++.+||=.+|.
T Consensus 75 q~~RRkma~qnP~mH-NSEISK~LG~~WK~Lse~EKrPFi~E 115 (331)
T KOG0527|consen 75 QGQRRKLAKQNPKMH-NSEISKRLGAEWKLLSEEEKRPFVDE 115 (331)
T ss_pred HHHHHHHHHhCcchh-hHHHHHHHHHHHhhcCHhhhccHHHH
Confidence 456666666678876 44999999999999999999887773
No 192
>COG5216 Uncharacterized conserved protein [Function unknown]
Probab=25.49 E-value=32 Score=23.97 Aligned_cols=15 Identities=47% Similarity=0.698 Sum_probs=11.9
Q ss_pred eeeeceeeeecCccc
Q 019908 124 TLKVSLEDLYNGTTK 138 (334)
Q Consensus 124 ~l~~sl~e~~~G~~~ 138 (334)
.++++|+++..|-.+
T Consensus 30 RFeIsLeDl~~GE~V 44 (67)
T COG5216 30 RFEISLEDLRNGEVV 44 (67)
T ss_pred EeEEEHHHhhCCceE
Confidence 388999999988544
No 193
>COG0089 RplW Ribosomal protein L23 [Translation, ribosomal structure and biogenesis]
Probab=25.09 E-value=56 Score=25.19 Aligned_cols=21 Identities=29% Similarity=0.294 Sum_probs=18.0
Q ss_pred ccCCCCCCCHHHHHHHHHHHH
Q 019908 17 ILGVSKSATEDELKKAYRKAA 37 (334)
Q Consensus 17 iLgv~~~a~~~eik~ayr~la 37 (334)
++-|+++|+..|||+|..++-
T Consensus 25 vF~V~~~AtK~~IK~AvE~lF 45 (94)
T COG0089 25 VFIVDPDATKPEIKAAVEELF 45 (94)
T ss_pred EEEECCCCCHHHHHHHHHHHh
Confidence 577899999999999988775
No 194
>PF14354 Lar_restr_allev: Restriction alleviation protein Lar
Probab=25.09 E-value=94 Score=21.26 Aligned_cols=8 Identities=25% Similarity=0.891 Sum_probs=5.1
Q ss_pred EeCCCCcc
Q 019908 189 HVCPECRG 196 (334)
Q Consensus 189 ~~C~~C~G 196 (334)
..|..|+.
T Consensus 30 V~C~~Cga 37 (61)
T PF14354_consen 30 VECTDCGA 37 (61)
T ss_pred EEcCCCCC
Confidence 55777764
No 195
>PRK02935 hypothetical protein; Provisional
Probab=24.49 E-value=44 Score=26.26 Aligned_cols=26 Identities=27% Similarity=0.811 Sum_probs=17.7
Q ss_pred EEeCCCCccceEEEccCCCCCccCCC
Q 019908 188 QHVCPECRGAGEVISERDKCPQCKAN 213 (334)
Q Consensus 188 ~~~C~~C~G~G~~~~~~~~C~~C~G~ 213 (334)
+..||.|+-.-+..-+.+.|-.|+-.
T Consensus 70 qV~CP~C~K~TKmLGrvD~CM~C~~P 95 (110)
T PRK02935 70 QVICPSCEKPTKMLGRVDACMHCNQP 95 (110)
T ss_pred eeECCCCCchhhhccceeecCcCCCc
Confidence 46777777665555566788888754
No 196
>PF09855 DUF2082: Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082); InterPro: IPR018652 This family of proteins contains various hypothetical prokaryotic proteins as well as some Zn-ribbon nucleic-acid-binding proteins.
Probab=23.64 E-value=1.6e+02 Score=20.98 Aligned_cols=9 Identities=22% Similarity=0.615 Sum_probs=6.0
Q ss_pred EeCCCCccc
Q 019908 189 HVCPECRGA 197 (334)
Q Consensus 189 ~~C~~C~G~ 197 (334)
..|++|.=+
T Consensus 37 v~C~~CGYT 45 (64)
T PF09855_consen 37 VSCTNCGYT 45 (64)
T ss_pred EECCCCCCE
Confidence 578888643
No 197
>cd00084 HMG-box High Mobility Group (HMG)-box is found in a variety of eukaryotic chromosomal proteins and transcription factors. HMGs bind to the minor groove of DNA and have been classified by DNA binding preferences. Two phylogenically distinct groups of Class I proteins bind DNA in a sequence specific fashion and contain a single HMG box. One group (SOX-TCF) includes transcription factors, TCF-1, -3, -4; and also SRY and LEF-1, which bind four-way DNA junctions and duplex DNA targets. The second group (MATA) includes fungal mating type gene products MC, MATA1 and Ste11. Class II and III proteins (HMGB-UBF) bind DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal proteins, HMG1 and HMG2, which bind to bent or distorted DNA such as four-way DNA junctions, synthetic DNA cruciforms, kinked cisplatin-modified DNA, DNA bulges, cross-overs in supercoiled DNA, and can cause looping of linear DNA. Class III member
Probab=23.49 E-value=57 Score=22.14 Aligned_cols=43 Identities=23% Similarity=0.326 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHhCCCCCCChHHHHHHHHHHhhcCCCcccchhcc
Q 019908 29 LKKAYRKAAMKNHPDKGGDPEKFKELGQAYEVLSDPEKRDIYDQ 72 (334)
Q Consensus 29 ik~ayr~la~~~hPd~~~~~~~f~~i~~Ay~~L~d~~~r~~YD~ 72 (334)
-.+.++...+..||+.+ ..+..+.+.+.|..|++.++...+|.
T Consensus 11 f~~~~~~~~~~~~~~~~-~~~i~~~~~~~W~~l~~~~k~~y~~~ 53 (66)
T cd00084 11 FSQEHRAEVKAENPGLS-VGEISKILGEMWKSLSEEEKKKYEEK 53 (66)
T ss_pred HHHHHHHHHHHHCcCCC-HHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 34566777778888844 33788899999999997666554443
No 198
>PTZ00087 thrombosponding-related protein; Provisional
Probab=23.24 E-value=1.1e+02 Score=28.38 Aligned_cols=14 Identities=21% Similarity=0.674 Sum_probs=8.1
Q ss_pred ccCC-CCCC-CcEEEE
Q 019908 162 GKCY-GCQG-TGMKIT 175 (334)
Q Consensus 162 ~~C~-~C~G-~G~~~~ 175 (334)
..|+ .|+| .|.+.+
T Consensus 240 S~CSkTCGgggGVQtR 255 (340)
T PTZ00087 240 SNCSMECDHPDNVQIR 255 (340)
T ss_pred CCcCcccCCCCCeEeE
Confidence 3465 5665 576655
No 199
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=22.98 E-value=4.8e+02 Score=28.38 Aligned_cols=86 Identities=16% Similarity=0.168 Sum_probs=43.2
Q ss_pred eEEEEEEeccCccCCcEEEEec--CcCCCCCCCCcCEEEEEEEE--eCCCceeecCcEEEEEecCHHHHhCCCeEEEe-c
Q 019908 219 KKVLEVHVEKGMQHGQKIAFEG--QADEAPDTITGDIVFILQLK--EHPKFKRKFDDLYVDHTLSLTEALCGFQFALT-H 293 (334)
Q Consensus 219 ~~~~~v~Ip~G~~~G~~i~l~g--~G~~~~~~~~GDL~v~i~v~--~~~~f~r~g~dL~~~~~I~l~~al~G~~~~i~-t 293 (334)
.+++.|.|+.| .++.++- -|.+. ..|...|.+++. +-+...++ .-+....+.-..|-.|-.-.|- .
T Consensus 1015 gEe~~v~ie~G----ktLii~l~aige~d---~~G~r~v~felNGq~R~i~v~D--rs~~~~~~~r~KAd~~Np~higAp 1085 (1149)
T COG1038 1015 GEEIEVEIEKG----KTLIIKLQAIGEPD---EKGMRTVYFELNGQPREIKVKD--RSVGSSVVARRKADPGNPGHIGAP 1085 (1149)
T ss_pred CceEEEEecCC----cEEEEEecccCCCC---cCCcEEEEEEeCCceeeeeecc--cccccccccccccCCCCccccCCC
Confidence 56788998876 4455544 44432 235555555444 32222221 1122223333444455554442 3
Q ss_pred CCCCeEEEEcCCCceecCCc
Q 019908 294 LDGRQLLIKSNPGEIIKPGI 313 (334)
Q Consensus 294 ldG~~l~v~i~~g~~i~~g~ 313 (334)
.-|..++|.+..|+.++-|.
T Consensus 1086 mpG~Vv~v~V~~G~~Vk~Gd 1105 (1149)
T COG1038 1086 MPGVVVEVKVKKGDKVKKGD 1105 (1149)
T ss_pred CCCceEEEEEccCCeecCCC
Confidence 45666777777776655544
No 200
>PF09285 Elong-fact-P_C: Elongation factor P, C-terminal; InterPro: IPR015365 These nucleic acid binding domains are predominantly found in elongation factor P, where they adopt an OB-fold, with five beta-strands forming a beta-barrel in a Greek-key topology []. ; GO: 0043043 peptide biosynthetic process, 0005737 cytoplasm; PDB: 1YBY_A 3OYY_B 1UEB_B 3HUW_V 3HUY_V 3A5Z_H.
Probab=22.95 E-value=85 Score=21.71 Aligned_cols=20 Identities=25% Similarity=0.328 Sum_probs=14.2
Q ss_pred EEEEEeccCccCCcEEEEec
Q 019908 221 VLEVHVEKGMQHGQKIAFEG 240 (334)
Q Consensus 221 ~~~v~Ip~G~~~G~~i~l~g 240 (334)
-+.|.+|+-++.|++|++.-
T Consensus 29 G~~i~VP~FI~~Gd~I~VdT 48 (56)
T PF09285_consen 29 GAEIQVPLFIEEGDKIKVDT 48 (56)
T ss_dssp S-EEEEETT--TT-EEEEET
T ss_pred CCEEEccceecCCCEEEEEC
Confidence 37899999999999999975
No 201
>PF02736 Myosin_N: Myosin N-terminal SH3-like domain; InterPro: IPR004009 This domain has an SH3-like fold. It is found at the N terminus of many but not all myosins. The function of this domain is unknown.; GO: 0003774 motor activity, 0005524 ATP binding, 0016459 myosin complex; PDB: 2EC6_A 2W4H_M 1O1E_P 1O1D_D 1O18_A 1O1C_P 1O1B_D 1O1F_A 2W4A_M 2W4G_M ....
Probab=22.88 E-value=1.3e+02 Score=19.22 Aligned_cols=33 Identities=15% Similarity=0.233 Sum_probs=22.8
Q ss_pred eecCcEEEEEecCHHHHhCCCeEEEecCCCCeEEEE
Q 019908 267 RKFDDLYVDHTLSLTEALCGFQFALTHLDGRQLLIK 302 (334)
Q Consensus 267 r~g~dL~~~~~I~l~~al~G~~~~i~tldG~~l~v~ 302 (334)
++..+-|..-.|. ...|..+.|.+.+|+.+.|+
T Consensus 7 pD~~egfv~g~I~---~~~g~~vtV~~~~G~~~tv~ 39 (42)
T PF02736_consen 7 PDPKEGFVKGEII---EEEGDKVTVKTEDGKEVTVK 39 (42)
T ss_dssp EESSSSEEEEEEE---EEESSEEEEEETTTEEEEEE
T ss_pred eCCcccEEEEEEE---EEcCCEEEEEECCCCEEEeC
Confidence 4445555555555 46788999999999876654
No 202
>cd01388 SOX-TCF_HMG-box SOX-TCF_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and transcription factor-like proteins, TCF-1, -3, -4, and LEF-1. They appear to bind the minor groove of the A/T C A A A G/C-motif.
Probab=22.82 E-value=69 Score=22.82 Aligned_cols=41 Identities=29% Similarity=0.462 Sum_probs=30.2
Q ss_pred HHHHHHHHHhCCCCCCChHHHHHHHHHHhhcCCCcccchhcc
Q 019908 31 KAYRKAAMKNHPDKGGDPEKFKELGQAYEVLSDPEKRDIYDQ 72 (334)
Q Consensus 31 ~ayr~la~~~hPd~~~~~~~f~~i~~Ay~~L~d~~~r~~YD~ 72 (334)
+.+|....+-||+.. ..+..+.|.+.|..|++.++...+|.
T Consensus 14 ~~~r~~~~~~~p~~~-~~eisk~l~~~Wk~ls~~eK~~y~~~ 54 (72)
T cd01388 14 KRHRRKVLQEYPLKE-NRAISKILGDRWKALSNEEKQPYYEE 54 (72)
T ss_pred HHHHHHHHHHCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 445666667789853 44888999999999998887665554
No 203
>PRK03824 hypA hydrogenase nickel incorporation protein; Provisional
Probab=22.49 E-value=41 Score=27.63 Aligned_cols=11 Identities=18% Similarity=0.646 Sum_probs=6.7
Q ss_pred eeeeCCCCCCC
Q 019908 144 RNILCPKCKGK 154 (334)
Q Consensus 144 ~~~~C~~C~G~ 154 (334)
....|..|.-.
T Consensus 69 ~~~~C~~CG~~ 79 (135)
T PRK03824 69 AVLKCRNCGNE 79 (135)
T ss_pred eEEECCCCCCE
Confidence 34567777643
No 204
>PRK00762 hypA hydrogenase nickel incorporation protein; Provisional
Probab=22.40 E-value=90 Score=25.21 Aligned_cols=20 Identities=15% Similarity=0.385 Sum_probs=10.1
Q ss_pred cCcccccc-cceeeeCCCCCCC
Q 019908 134 NGTTKKLS-LSRNILCPKCKGK 154 (334)
Q Consensus 134 ~G~~~~i~-~~~~~~C~~C~G~ 154 (334)
.|+...+. ++-...| .|+-.
T Consensus 58 egA~L~I~~vp~~~~C-~Cg~~ 78 (124)
T PRK00762 58 EDADLIVEMIPVEIEC-ECGYE 78 (124)
T ss_pred CCCEEEEEecCeeEEe-eCcCc
Confidence 34444432 3345668 88744
No 205
>PF09862 DUF2089: Protein of unknown function (DUF2089); InterPro: IPR018658 This family consists of various hypothetical prokaryotic proteins.
Probab=22.02 E-value=59 Score=25.98 Aligned_cols=8 Identities=38% Similarity=0.737 Sum_probs=4.2
Q ss_pred CCCCCCCc
Q 019908 164 CYGCQGTG 171 (334)
Q Consensus 164 C~~C~G~G 171 (334)
||.|++.=
T Consensus 1 CPvCg~~l 8 (113)
T PF09862_consen 1 CPVCGGEL 8 (113)
T ss_pred CCCCCCce
Confidence 56665443
No 206
>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain. This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.
Probab=21.86 E-value=55 Score=20.14 Aligned_cols=8 Identities=25% Similarity=0.675 Sum_probs=4.6
Q ss_pred EeCCCCcc
Q 019908 189 HVCPECRG 196 (334)
Q Consensus 189 ~~C~~C~G 196 (334)
..|+.|+.
T Consensus 26 v~C~~C~~ 33 (38)
T TIGR02098 26 VRCGKCGH 33 (38)
T ss_pred EECCCCCC
Confidence 45666653
No 207
>cd01389 MATA_HMG-box MATA_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include the fungal mating type gene products MC, MATA1 and Ste11.
Probab=21.80 E-value=75 Score=22.92 Aligned_cols=42 Identities=12% Similarity=0.113 Sum_probs=31.4
Q ss_pred HHHHHHHHHHhCCCCCCChHHHHHHHHHHhhcCCCcccchhcc
Q 019908 30 KKAYRKAAMKNHPDKGGDPEKFKELGQAYEVLSDPEKRDIYDQ 72 (334)
Q Consensus 30 k~ayr~la~~~hPd~~~~~~~f~~i~~Ay~~L~d~~~r~~YD~ 72 (334)
.+.+|...+.-||+.. ..+..+.|.+.|..|++.++...++.
T Consensus 13 ~~~~r~~~~~~~p~~~-~~eisk~~g~~Wk~ls~eeK~~y~~~ 54 (77)
T cd01389 13 RQDKHAQLKTENPGLT-NNEISRIIGRMWRSESPEVKAYYKEL 54 (77)
T ss_pred HHHHHHHHHHHCCCCC-HHHHHHHHHHHHhhCCHHHHHHHHHH
Confidence 4567778888899864 33888899999999997776554443
No 208
>cd01390 HMGB-UBF_HMG-box HMGB-UBF_HMG-box, class II and III members of the HMG-box superfamily of DNA-binding proteins. These proteins bind the minor groove of DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal proteins, HMG1 and HMG2, which bind to bent or distorted DNA such as four-way DNA junctions, synthetic DNA cruciforms, kinked cisplatin-modified DNA, DNA bulges, cross-overs in supercoiled DNA, and can cause looping of linear DNA. Class III members include nucleolar and mitochondrial transcription factors, UBF and mtTF1, which bind four-way DNA junctions.
Probab=21.71 E-value=66 Score=22.01 Aligned_cols=39 Identities=31% Similarity=0.419 Sum_probs=27.9
Q ss_pred HHHHHHHhCCCCCCChHHHHHHHHHHhhcCCCcccchhcc
Q 019908 33 YRKAAMKNHPDKGGDPEKFKELGQAYEVLSDPEKRDIYDQ 72 (334)
Q Consensus 33 yr~la~~~hPd~~~~~~~f~~i~~Ay~~L~d~~~r~~YD~ 72 (334)
.|...+.-||+.. ..+..+.|.+.|..|++.++....+.
T Consensus 15 ~r~~~~~~~p~~~-~~~i~~~~~~~W~~ls~~eK~~y~~~ 53 (66)
T cd01390 15 QRPKLKKENPDAS-VTEVTKILGEKWKELSEEEKKKYEEK 53 (66)
T ss_pred HHHHHHHHCcCCC-HHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 4555566688743 33889999999999997776555454
No 209
>PF05741 zf-nanos: Nanos RNA binding domain; InterPro: IPR024161 Nanos is a highly conserved RNA-binding protein in higher eukaryotes and functions as a key regulatory protein in translational control using a 3' untranslated region during the development and maintenance of germ cells. Nanos comprises a non-conserved amino-terminus and highly conserved carboxy- terminal regions. The C-terminal region has two conserved Cys-Cys-His-Cys (CCHC)-type zinc-finger motifs that are indispensable for nanos function [, , ]. The structure of the nanos-type zinc finger is composed of two independent zinc-finger (ZF) lobes, the N-terminal ZF1 and the C-terminal ZF2, which are connected by a linker helix []. These lobes create a large cleft. Zinc ions in ZF1 and ZF2 are bound to the CCHC motif by tetrahedral coordination.; PDB: 3ALR_B.
Probab=21.35 E-value=44 Score=23.06 Aligned_cols=25 Identities=24% Similarity=0.679 Sum_probs=9.4
Q ss_pred ccceeeeCCCCCCCCCccCCcccCC
Q 019908 141 SLSRNILCPKCKGKGSKSGALGKCY 165 (334)
Q Consensus 141 ~~~~~~~C~~C~G~G~~~~~~~~C~ 165 (334)
.+-+..+|+.|.-+|....+..-|+
T Consensus 29 PvLr~y~Cp~CgAtGd~AHT~~yCP 53 (55)
T PF05741_consen 29 PVLRKYVCPICGATGDNAHTIKYCP 53 (55)
T ss_dssp TTGGG---TTT---GGG---GGG-T
T ss_pred HHHhcCcCCCCcCcCccccccccCc
Confidence 4456667888888877665555454
No 210
>TIGR00757 RNaseEG ribonuclease, Rne/Rng family. The C-terminal half of RNase E (excluded from the seed alignment for this model) lacks ribonuclease activity but participates in mRNA degradation by organizing the degradosome.
Probab=21.21 E-value=48 Score=32.70 Aligned_cols=14 Identities=43% Similarity=0.781 Sum_probs=11.0
Q ss_pred ccCCCCCCCcEEEE
Q 019908 162 GKCYGCQGTGMKIT 175 (334)
Q Consensus 162 ~~C~~C~G~G~~~~ 175 (334)
.+|+.|+|+|.+..
T Consensus 391 ~~Cp~C~G~G~v~s 404 (414)
T TIGR00757 391 TVCPHCSGTGIVKT 404 (414)
T ss_pred CCCCCCcCeeEEcc
Confidence 56999999998643
No 211
>PF07754 DUF1610: Domain of unknown function (DUF1610); InterPro: IPR011668 This domain is found in archaeal species. It is likely to bind zinc via its four well-conserved cysteine residues.
Probab=21.14 E-value=82 Score=17.86 Aligned_cols=6 Identities=50% Similarity=1.641 Sum_probs=3.3
Q ss_pred EeCCCC
Q 019908 189 HVCPEC 194 (334)
Q Consensus 189 ~~C~~C 194 (334)
-+||.|
T Consensus 17 f~CPnC 22 (24)
T PF07754_consen 17 FPCPNC 22 (24)
T ss_pred EeCCCC
Confidence 455555
No 212
>PF01096 TFIIS_C: Transcription factor S-II (TFIIS); InterPro: IPR001222 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger motif found in transcription factor IIs (TFIIS). In eukaryotes the initiation of transcription of protein encoding genes by polymerase II (Pol II) is modulated by general and specific transcription factors. The general transcription factors operate through common promoters elements (such as the TATA box). At least eight different proteins associate to form the general transcription factors: TFIIA, -IIB, -IID, -IIE, -IIF, -IIG, -IIH and -IIS []. During mRNA elongation, Pol II can encounter DNA sequences that cause reverse movement of the enzyme. Such backtracking involves extrusion of the RNA 3'-end into the pore, and can lead to transcriptional arrest. Escape from arrest requires cleavage of the extruded RNA with the help of TFIIS, which induces mRNA cleavage by enhancing the intrinsic nuclease activity of RNA polymerase (Pol) II, past template-encoded pause sites []. TFIIS extends from the polymerase surface via a pore to the internal active site. Two essential and invariant acidic residues in a TFIIS loop complement the Pol II active site and could position a metal ion and a water molecule for hydrolytic RNA cleavage. TFIIS also induces extensive structural changes in Pol II that would realign nucleic acids in the active centre. TFIIS is a protein of about 300 amino acids. It contains three regions: a variable N-terminal domain not required for TFIIS activity; a conserved central domain required for Pol II binding; and a conserved C-terminal C4-type zinc finger essential for RNA cleavage. The zinc finger folds in a conformation termed a zinc ribbon [] characterised by a three-stranded antiparallel beta-sheet and two beta-hairpins. A backbone model for Pol II-TFIIS complex was obtained from X-ray analysis. It shows that a beta hairpin protrudes from the zinc finger and complements the pol II active site []. Some viral proteins also contain the TFIIS zinc ribbon C-terminal domain. The Vaccinia virus protein, unlike its eukaryotic homologue, is an integral RNA polymerase subunit rather than a readily separable transcription factor []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding, 0006351 transcription, DNA-dependent; PDB: 3M4O_I 3S14_I 2E2J_I 4A3J_I 3HOZ_I 1TWA_I 3S1Q_I 3S1N_I 1TWG_I 3I4M_I ....
Probab=21.00 E-value=1.6e+02 Score=18.46 Aligned_cols=17 Identities=24% Similarity=0.303 Sum_probs=9.5
Q ss_pred cCCCCCCCcEEEEEEee
Q 019908 163 KCYGCQGTGMKITTRQI 179 (334)
Q Consensus 163 ~C~~C~G~G~~~~~~~~ 179 (334)
.|+.|+.........|+
T Consensus 2 ~Cp~Cg~~~a~~~~~Q~ 18 (39)
T PF01096_consen 2 KCPKCGHNEAVFFQIQT 18 (39)
T ss_dssp --SSS-SSEEEEEEESS
T ss_pred CCcCCCCCeEEEEEeec
Confidence 47778777766665554
No 213
>PF03811 Zn_Tnp_IS1: InsA N-terminal domain; InterPro: IPR003220 Insertion elements are mobile elements in DNA, usually encoding proteins required for transposition, for example transposases. Protein InsA is absolutely required for transposition of insertion element 1. This entry represents a short zinc binding domain found in IS1 InsA family protein. It is found at the N terminus of the protein and may be a DNA-binding domain.; GO: 0006313 transposition, DNA-mediated
Probab=21.00 E-value=93 Score=19.40 Aligned_cols=11 Identities=27% Similarity=1.147 Sum_probs=7.1
Q ss_pred eeeCCCCCCCC
Q 019908 145 NILCPKCKGKG 155 (334)
Q Consensus 145 ~~~C~~C~G~G 155 (334)
.+.||.|+.+-
T Consensus 5 ~v~CP~C~s~~ 15 (36)
T PF03811_consen 5 DVHCPRCQSTE 15 (36)
T ss_pred eeeCCCCCCCC
Confidence 35677777655
No 214
>KOG0005 consensus Ubiquitin-like protein [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=20.94 E-value=84 Score=22.07 Aligned_cols=20 Identities=20% Similarity=0.474 Sum_probs=16.9
Q ss_pred eEEEecCCCCeEEEEcCCCc
Q 019908 288 QFALTHLDGRQLLIKSNPGE 307 (334)
Q Consensus 288 ~~~i~tldG~~l~v~i~~g~ 307 (334)
.+.++||.|+.+.|.|.|.+
T Consensus 2 ~iKvktLt~KeIeidIep~D 21 (70)
T KOG0005|consen 2 LIKVKTLTGKEIEIDIEPTD 21 (70)
T ss_pred eeeEeeeccceEEEeeCcch
Confidence 47899999999999988764
No 215
>PRK14892 putative transcription elongation factor Elf1; Provisional
Probab=20.51 E-value=67 Score=25.01 Aligned_cols=10 Identities=30% Similarity=1.022 Sum_probs=6.0
Q ss_pred ceeeeCCCCC
Q 019908 143 SRNILCPKCK 152 (334)
Q Consensus 143 ~~~~~C~~C~ 152 (334)
.....|+.|+
T Consensus 19 pt~f~CP~Cg 28 (99)
T PRK14892 19 PKIFECPRCG 28 (99)
T ss_pred CcEeECCCCC
Confidence 3445677776
No 216
>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1). Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha
Probab=20.26 E-value=2.7e+02 Score=23.34 Aligned_cols=42 Identities=19% Similarity=0.250 Sum_probs=27.7
Q ss_pred EEEEEEeCCCceeecCcEEEEEecCHHHHhCC--CeEEEecCCCC
Q 019908 255 FILQLKEHPKFKRKFDDLYVDHTLSLTEALCG--FQFALTHLDGR 297 (334)
Q Consensus 255 v~i~v~~~~~f~r~g~dL~~~~~I~l~~al~G--~~~~i~tldG~ 297 (334)
++|.|..+..|.+ .++++-+..|+|..-... ....++.++|+
T Consensus 80 L~~~V~d~~~f~~-~D~~iG~~~i~L~~l~~~~~~~~~~~L~~~~ 123 (155)
T cd08690 80 LKFEVYHKGGFLR-SDKLLGTAQVKLEPLETKCEIHESVDLMDGR 123 (155)
T ss_pred EEEEEEeCCCccc-CCCeeEEEEEEcccccccCcceEEEEhhhCC
Confidence 6677776666644 578999988888775433 34455666654
No 217
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=20.19 E-value=1.9e+02 Score=27.31 Aligned_cols=10 Identities=40% Similarity=1.085 Sum_probs=6.8
Q ss_pred eeeCCCCCCC
Q 019908 145 NILCPKCKGK 154 (334)
Q Consensus 145 ~~~C~~C~G~ 154 (334)
...||.|.+.
T Consensus 184 ~~~CPvCGs~ 193 (305)
T TIGR01562 184 RTLCPACGSP 193 (305)
T ss_pred CCcCCCCCCh
Confidence 3468888765
No 218
>CHL00030 rpl23 ribosomal protein L23
Probab=20.17 E-value=82 Score=24.20 Aligned_cols=21 Identities=19% Similarity=0.165 Sum_probs=17.7
Q ss_pred ccCCCCCCCHHHHHHHHHHHH
Q 019908 17 ILGVSKSATEDELKKAYRKAA 37 (334)
Q Consensus 17 iLgv~~~a~~~eik~ayr~la 37 (334)
++-|+++|+..|||+|..++-
T Consensus 23 ~F~V~~~anK~eIK~avE~lf 43 (93)
T CHL00030 23 TFDVDSGSTKTEIKHWIELFF 43 (93)
T ss_pred EEEECCCCCHHHHHHHHHHHh
Confidence 467899999999999987764
Done!