Query 019908
Match_columns 334
No_of_seqs 314 out of 2355
Neff 7.9
Searched_HMMs 29240
Date Mon Mar 25 08:53:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019908.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019908hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3lz8_A Putative chaperone DNAJ 100.0 1.6E-58 5.6E-63 434.7 16.2 258 8-333 24-300 (329)
2 1nlt_A Protein YDJ1, mitochond 100.0 2.3E-55 7.9E-60 399.0 21.8 218 115-333 8-235 (248)
3 3agx_A DNAJ homolog subfamily 100.0 1.3E-37 4.6E-42 269.4 14.9 152 118-332 2-164 (181)
4 2q2g_A HSP40 protein, heat sho 100.0 4.7E-35 1.6E-39 253.3 16.3 150 118-332 3-164 (180)
5 1c3g_A Heat shock protein 40; 100.0 2.6E-33 9E-38 240.2 13.3 147 119-333 1-159 (170)
6 1bq0_A DNAJ, HSP40; chaperone, 99.9 1.5E-23 5E-28 165.0 4.2 90 11-100 2-98 (103)
7 2ctr_A DNAJ homolog subfamily 99.9 3.6E-22 1.2E-26 152.5 7.1 73 9-81 4-79 (88)
8 2o37_A Protein SIS1; HSP40, J- 99.9 3.2E-22 1.1E-26 154.0 5.8 75 7-81 3-78 (92)
9 2och_A Hypothetical protein DN 99.9 2.7E-22 9.3E-27 147.8 4.8 70 7-76 3-73 (73)
10 1hdj_A Human HSP40, HDJ-1; mol 99.8 5.9E-22 2E-26 147.5 5.6 69 11-79 2-73 (77)
11 2ej7_A HCG3 gene; HCG3 protein 99.8 1.1E-21 3.9E-26 147.8 5.3 70 8-77 5-79 (82)
12 2dmx_A DNAJ homolog subfamily 99.8 1.4E-21 4.9E-26 150.4 4.6 74 7-80 4-82 (92)
13 2ctp_A DNAJ homolog subfamily 99.8 1.5E-21 5E-26 145.7 4.4 69 8-76 3-74 (78)
14 2dn9_A DNAJ homolog subfamily 99.8 1.8E-21 6.1E-26 145.6 4.1 69 8-76 3-75 (79)
15 2cug_A Mkiaa0962 protein; DNAJ 99.8 3.9E-21 1.3E-25 146.7 4.0 68 9-76 14-84 (88)
16 2yua_A Williams-beuren syndrom 99.8 1.3E-20 4.4E-25 147.0 7.0 73 7-79 12-90 (99)
17 2ctt_A DNAJ homolog subfamily 99.8 7.1E-21 2.4E-25 149.8 5.3 101 119-226 2-103 (104)
18 2lgw_A DNAJ homolog subfamily 99.8 4.5E-21 1.5E-25 149.4 3.1 69 12-80 2-75 (99)
19 2ctq_A DNAJ homolog subfamily 99.8 7.3E-21 2.5E-25 151.7 4.1 72 8-79 16-91 (112)
20 2ctw_A DNAJ homolog subfamily 99.8 1.7E-20 5.7E-25 148.9 5.7 72 8-79 13-88 (109)
21 1wjz_A 1700030A21RIK protein; 99.8 4.3E-20 1.5E-24 142.7 4.2 68 7-74 11-88 (94)
22 3apq_A DNAJ homolog subfamily 99.8 1.4E-19 4.8E-24 159.5 4.5 86 12-100 2-91 (210)
23 1faf_A Large T antigen; J doma 99.8 4.6E-20 1.6E-24 137.7 1.1 68 8-76 7-76 (79)
24 2pf4_E Small T antigen; PP2A, 99.8 1.9E-20 6.6E-25 159.2 -1.7 68 8-75 7-76 (174)
25 1gh6_A Large T antigen; tumor 99.8 3.9E-20 1.3E-24 147.4 -0.6 66 10-75 6-73 (114)
26 2qsa_A DNAJ homolog DNJ-2; J-d 99.8 1.7E-19 5.8E-24 143.2 2.4 68 8-75 11-86 (109)
27 2l6l_A DNAJ homolog subfamily 99.7 1.4E-18 4.8E-23 146.4 5.2 68 8-75 6-83 (155)
28 2ys8_A RAB-related GTP-binding 99.7 1.5E-18 5E-23 132.9 4.2 61 9-69 24-87 (90)
29 2guz_A Mitochondrial import in 99.7 1.8E-18 6.2E-23 126.4 3.8 65 4-68 6-71 (71)
30 3i38_A Putative chaperone DNAJ 99.7 5.2E-17 1.8E-21 128.5 7.7 71 260-333 2-80 (109)
31 1xao_A YDJ1, mitochondrial pro 99.7 5.3E-17 1.8E-21 130.9 7.8 70 264-333 1-80 (121)
32 1iur_A KIAA0730 protein; DNAJ 99.7 8E-18 2.7E-22 127.9 2.2 63 6-68 10-77 (88)
33 3hho_A CO-chaperone protein HS 99.6 4.3E-17 1.5E-21 139.7 3.0 63 10-72 2-75 (174)
34 1n4c_A Auxilin; four helix bun 99.6 7.2E-17 2.4E-21 138.0 2.5 62 9-70 114-182 (182)
35 1fpo_A HSC20, chaperone protei 99.6 6.8E-17 2.3E-21 138.0 2.3 62 13-74 2-74 (171)
36 3ag7_A Putative uncharacterize 99.6 9E-17 3.1E-21 126.3 2.5 57 8-65 37-104 (106)
37 3bvo_A CO-chaperone protein HS 99.6 1.5E-16 5.2E-21 139.7 3.0 63 10-72 41-114 (207)
38 3apo_A DNAJ homolog subfamily 99.6 4.1E-17 1.4E-21 170.0 -1.0 74 8-81 17-94 (780)
39 2qwo_B Putative tyrosine-prote 99.6 1.5E-16 5.3E-21 121.2 2.1 52 12-63 33-91 (92)
40 1nlt_A Protein YDJ1, mitochond 99.6 1E-15 3.5E-20 138.4 6.9 129 132-273 43-247 (248)
41 3uo3_A J-type CO-chaperone JAC 99.6 2.9E-16 1E-20 135.1 2.5 65 8-72 7-79 (181)
42 1exk_A DNAJ protein; extended 99.5 3.4E-14 1.2E-18 105.8 7.5 77 135-218 1-78 (79)
43 3i38_A Putative chaperone DNAJ 99.1 1.2E-11 4E-16 97.6 2.4 53 222-275 40-92 (109)
44 2guz_B Mitochondrial import in 99.1 2.8E-11 9.6E-16 86.0 3.8 52 11-62 3-57 (65)
45 1xao_A YDJ1, mitochondrial pro 99.0 1.2E-10 4.1E-15 93.6 3.3 54 221-274 35-93 (121)
46 2y4t_A DNAJ homolog subfamily 98.9 4.8E-10 1.6E-14 106.8 5.0 62 11-72 381-449 (450)
47 3agx_A DNAJ homolog subfamily 98.7 4E-09 1.4E-13 90.6 3.5 52 221-272 121-174 (181)
48 2q2g_A HSP40 protein, heat sho 98.7 6.2E-09 2.1E-13 89.3 3.6 52 221-272 121-174 (180)
49 1c3g_A Heat shock protein 40; 98.7 4.1E-09 1.4E-13 89.6 1.6 51 221-271 115-167 (170)
50 3lz8_A Putative chaperone DNAJ 98.6 1.2E-08 4.2E-13 95.5 2.4 53 222-275 260-312 (329)
51 2ctt_A DNAJ homolog subfamily 98.2 4.2E-07 1.4E-11 70.7 1.7 58 131-202 32-95 (104)
52 1exk_A DNAJ protein; extended 98.1 7.6E-07 2.6E-11 65.6 1.2 57 131-201 15-77 (79)
53 3lcz_A YCZA, inhibitor of trap 97.8 5.1E-06 1.8E-10 56.2 1.2 32 186-219 7-38 (53)
54 3lcz_A YCZA, inhibitor of trap 97.3 6.1E-05 2.1E-09 50.8 1.7 25 146-172 10-34 (53)
55 2bx9_A Anti-trap, AT, tryptoph 97.3 9.3E-05 3.2E-09 49.9 1.7 27 146-174 10-36 (53)
56 2bx9_A Anti-trap, AT, tryptoph 96.9 0.00041 1.4E-08 46.7 2.4 27 162-201 10-36 (53)
57 3pmq_A Decaheme cytochrome C M 96.8 0.00021 7.3E-09 72.2 -0.1 50 122-171 168-221 (669)
58 2pzi_A Probable serine/threoni 91.2 0.12 4.1E-06 52.4 3.6 48 10-61 627-676 (681)
59 1ltl_A DNA replication initiat 59.9 24 0.00082 31.3 7.4 63 189-260 157-224 (279)
60 2qkd_A Zinc finger protein ZPR 51.1 13 0.00045 35.1 4.2 78 162-240 13-112 (404)
61 2qkd_A Zinc finger protein ZPR 49.9 16 0.00056 34.4 4.7 19 222-240 302-320 (404)
62 2b7e_A PRE-mRNA processing pro 36.8 23 0.00078 23.9 2.5 47 27-73 3-55 (59)
63 1uzc_A Hypothetical protein FL 35.2 51 0.0018 22.9 4.3 51 23-73 11-65 (71)
64 1ny9_A Transcriptional activat 34.0 47 0.0016 26.0 4.5 53 19-75 71-124 (143)
65 2kdx_A HYPA, hydrogenase/ureas 30.1 18 0.00062 27.7 1.3 30 144-173 72-102 (119)
66 2bx2_L Ribonuclease E, RNAse E 29.9 8.2 0.00028 37.7 -0.9 24 179-202 399-422 (517)
67 3a43_A HYPD, hydrogenase nicke 29.3 13 0.00043 29.7 0.2 13 144-156 69-81 (139)
68 1ckt_A High mobility group 1 p 28.2 92 0.0032 20.8 4.7 40 32-71 15-55 (71)
69 3j20_Y 30S ribosomal protein S 27.4 43 0.0015 21.5 2.6 7 189-195 38-44 (50)
70 2cqn_A Formin-binding protein 26.1 44 0.0015 23.6 2.6 50 25-75 7-63 (77)
71 2d7l_A WD repeat and HMG-box D 24.7 36 0.0012 24.2 2.0 43 30-72 17-59 (81)
72 1i11_A Transcription factor SO 24.2 48 0.0016 23.1 2.6 42 30-72 16-57 (81)
73 2vf7_A UVRA2, excinuclease ABC 23.4 33 0.0011 35.6 2.2 33 163-199 640-672 (842)
74 2vl6_A SSO MCM N-TER, minichro 23.2 3.6E+02 0.012 23.2 10.4 62 189-259 169-236 (268)
75 1sif_A Ubiquitin; hydrophobic 22.8 63 0.0021 22.8 3.0 24 284-307 7-30 (88)
76 2a20_A Regulating synaptic mem 22.7 59 0.002 21.8 2.5 24 145-168 9-32 (62)
77 1hry_A Human SRY; DNA, DNA-bin 22.7 58 0.002 22.2 2.8 41 30-71 16-56 (76)
78 1wz6_A HMG-box transcription f 22.5 58 0.002 22.7 2.8 42 30-72 19-60 (82)
79 3zxf_A Galectin-7; sugar bindi 21.8 1.5E+02 0.005 23.1 5.3 42 222-263 8-59 (138)
80 3a43_A HYPD, hydrogenase nicke 21.7 47 0.0016 26.2 2.3 9 205-213 108-116 (139)
81 1qo8_A Flavocytochrome C3 fuma 21.6 9.1 0.00031 37.5 -2.4 66 147-214 14-86 (566)
82 3nm9_A HMG-D, high mobility gr 21.2 79 0.0027 21.4 3.2 39 30-72 15-53 (73)
83 4a3n_A Transcription factor SO 21.2 34 0.0012 23.0 1.3 41 30-71 14-54 (71)
84 1cf7_A Protein (transcription 21.1 95 0.0032 21.8 3.6 44 23-73 9-52 (76)
85 1r4v_A Hypothetical protein AQ 21.1 1.1E+02 0.0037 25.0 4.3 32 29-60 138-169 (171)
86 2pk2_A Cyclin-T1, protein TAT; 21.0 86 0.003 28.8 4.3 30 10-41 217-246 (358)
87 2r6f_A Excinuclease ABC subuni 20.5 50 0.0017 34.8 2.8 32 163-198 755-786 (972)
88 3ga8_A HTH-type transcriptiona 20.5 1.6E+02 0.0056 20.2 4.8 30 206-240 4-33 (78)
89 2zhn_A Galectin-9; beta sandwi 20.4 2.1E+02 0.0073 22.3 6.1 41 222-262 17-67 (148)
90 2crj_A SWI/SNF-related matrix- 20.0 61 0.0021 23.2 2.5 42 30-72 19-60 (92)
No 1
>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A
Probab=100.00 E-value=1.6e-58 Score=434.69 Aligned_cols=258 Identities=28% Similarity=0.411 Sum_probs=131.7
Q ss_pred CCCccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCh---HHHHHHHHHHhhcCCCcccchhcccChhhhhcCCCC
Q 019908 8 RSNNTKYYEILGVSKSATEDELKKAYRKAAMKNHPDKGGDP---EKFKELGQAYEVLSDPEKRDIYDQYGEDALKEGMGG 84 (334)
Q Consensus 8 ~~~~~~~y~iLgv~~~a~~~eik~ayr~la~~~hPd~~~~~---~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~~~~~~ 84 (334)
.++.+|||++|||+++|+.+|||+|||+||++||||+|+++ ++|++|++||++|+||.+|+.||+|+..+...++++
T Consensus 24 ~m~~~d~Y~vLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~~~~~~~~~~ 103 (329)
T 3lz8_A 24 AMELKDYYAILGVQPTDDLKTIKTAYRRLARKYHPDVSKENDAEAKFKDLAEAWEVLKDEQRRAEYDQLWQHRNDPGFGR 103 (329)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccCHHHHcCcCCCCCHHHHHHHHHHHHHHHCCCCCCChHHHHHHHHHHHHHHHhhhhhhhcccchhhccccCCCccc
Confidence 45678999999999999999999999999999999998754 799999999999999999999999854432222111
Q ss_pred -----CC--CCCCcchhhccccCCCCCCCCCCCCCCcccccccEEEeeeeceeeeecCcccccccceeeeCCCCCCCCCc
Q 019908 85 -----AG--AAHNPFDIFESFFGGGTFGAGGSSRGRRRKQGEDVVHTLKVSLEDLYNGTTKKLSLSRNILCPKCKGKGSK 157 (334)
Q Consensus 85 -----~~--~~~~~~d~f~~~Fg~~~~~~~~~~~~~~~~~~~di~~~l~~sl~e~~~G~~~~i~~~~~~~C~~C~G~G~~ 157 (334)
++ ++.+|.|+|++|||+++++ + ..+...++.|+.+.|.|||+|+|.|+++++.+++.+.| +.
T Consensus 104 ~~~~~~~~f~~~~f~diF~~~Fg~~g~~--~--~~~~~~~g~Dl~~~l~vsleea~~G~~k~i~i~~~v~~----g~--- 172 (329)
T 3lz8_A 104 QRQTHEQSYSQQDFDDIFSSMFGQQAHQ--R--RRQHAARGHDLEIEVAVFLEETLAEQTRTISYNLPVYN----VF--- 172 (329)
T ss_dssp -------------------------------------CCCCCCEEEEECCCTTGGGSCEEEEEEEEEEECC----SC---
T ss_pred ccccccCCcCCCchhhhhHhhhcCcCCC--C--CCCCcCCCCCEEEEEecchhhhhhccceEEEEEEEeec----CC---
Confidence 11 1235778999999753211 1 12234678999999999999999999999998876532 11
Q ss_pred cCCcccCCCCCCCcEEEEEEeeccceeeEEEEeCCCCccceEEEccCCCCCccCCCceeEEeEEEEEEeccCccCCcEEE
Q 019908 158 SGALGKCYGCQGTGMKITTRQIGLGMIQQMQHVCPECRGAGEVISERDKCPQCKANKVTQEKKVLEVHVEKGMQHGQKIA 237 (334)
Q Consensus 158 ~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~~~~~~v~Ip~G~~~G~~i~ 237 (334)
|.+ .+...++++|+||||+++|++|+
T Consensus 173 -------------G~v-----------------------------------------~~~~~~~l~V~IP~Gv~~G~~Ir 198 (329)
T 3lz8_A 173 -------------GMI-----------------------------------------ESETPKTLNVKIPAGVVDGQRIR 198 (329)
T ss_dssp -------------C-C-----------------------------------------CEEEEEEEEEEECTTCCTTCEEE
T ss_pred -------------eEE-----------------------------------------EEecceEEEEeCCCCCCCCCEEE
Confidence 110 12335689999999999999999
Q ss_pred EecCcCCCC-CCCCcCEEEEEEEEeCCCceeecCcEEEEEecCHHHHhCCCeEEEecCCCCeEEEEcCCCceecCCccc-
Q 019908 238 FEGQADEAP-DTITGDIVFILQLKEHPKFKRKFDDLYVDHTLSLTEALCGFQFALTHLDGRQLLIKSNPGEIIKPGIYF- 315 (334)
Q Consensus 238 l~g~G~~~~-~~~~GDL~v~i~v~~~~~f~r~g~dL~~~~~I~l~~al~G~~~~i~tldG~~l~v~i~~g~~i~~g~~~- 315 (334)
|+|+|++.+ ++.+|||||+|+|++|+.|+|+|+||+++++|+|+||++|+++.|+||||+ +.|+||++ +++|...
T Consensus 199 l~G~G~~g~~gg~~GDL~v~I~v~~h~~F~R~G~DL~~~~~Isl~eAllG~~v~VptLdG~-v~l~ip~g--t~~g~~~r 275 (329)
T 3lz8_A 199 LKGQGTPGENGGPNGDLWLVIHIAPHPLFDIVGHNLEIVLPLAPWEAALGAKVTVPTLKES-ILLTVPPG--SQAGQRLR 275 (329)
T ss_dssp ESSCSCCC---CCCCCEEEEECCCCCSSCEEETTEEEEEEEECHHHHHHCEEEEECCSSSC-EEEEECTT--CCTTCEEE
T ss_pred EcccccCCCCCCCCCcEEEEEEEecCCccEEcCCcEEEEEECCHHHHcCCCeEEEECCCCC-EEEEECCC--CCCCCEEE
Confidence 999999974 578999999999999999999999999999999999999999999999998 79999988 4676544
Q ss_pred -----CC--CCCccEEEEEEEEEee
Q 019908 316 -----DN--FTSVNLYLHEYCFLWL 333 (334)
Q Consensus 316 -----~~--~~~GdL~v~~~V~~p~ 333 (334)
+| ..+|||||+|+|.||-
T Consensus 276 l~G~GmP~~~~rGDL~v~~~V~~P~ 300 (329)
T 3lz8_A 276 IKGKGLVSKTHTGDLFAVIKIVMPT 300 (329)
T ss_dssp ETTCSCBCSSCBCCEEEEEEECCCS
T ss_pred EcCCCCCCCCCCCCEEEEEEEECCC
Confidence 33 4689999999999994
No 2
>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1
Probab=100.00 E-value=2.3e-55 Score=398.95 Aligned_cols=218 Identities=44% Similarity=0.791 Sum_probs=205.3
Q ss_pred ccccccEEEeeeeceeeeecCcccccccceeeeCCCCCCCCCccCCcccCCCCCCCcEEEEEEeeccceeeEEEEeCCCC
Q 019908 115 RKQGEDVVHTLKVSLEDLYNGTTKKLSLSRNILCPKCKGKGSKSGALGKCYGCQGTGMKITTRQIGLGMIQQMQHVCPEC 194 (334)
Q Consensus 115 ~~~~~di~~~l~~sl~e~~~G~~~~i~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C 194 (334)
+.++.|+.+.|++||+|+|+|+++++.+++.+.|++|+|+|...+...+|+.|+|+|+++..+++++ |+++++.+|+.|
T Consensus 8 ~~~g~d~~~~l~vslee~~~G~~k~i~~~r~~~C~~C~G~G~~~g~~~~C~~C~G~G~~~~~~~~g~-~~~~~~~~C~~C 86 (248)
T 1nlt_A 8 PQRGKDIKHEISASLEELYKGRTAKLALNKQILCKECEGRGGKKGAVKKCTSCNGQGIKFVTRQMGP-MIQRFQTECDVC 86 (248)
T ss_dssp CCBCCCEEEEEEECTTHHHHCEEEEEEEEEEEECTTTTTCSBSTTTCCCCTTSSSSSCEEEEEESSS-EEEEEECSCTTC
T ss_pred CCCCCCEEEEEEecHHHhcCCceEEEEeeEEEeCCCCcCccCCCCCCccCCCCCCCcEEEEEEecCc-eEEEEEEcCCCC
Confidence 4578999999999999999999999999999999999999999887788999999999999899999 888999999999
Q ss_pred ccceEEEccCCCCCccCCCceeEEeEEEEEEeccCccCCcEEEEecCcCCCCCCCCcCEEEEEEEEeCCCceeecCcEEE
Q 019908 195 RGAGEVISERDKCPQCKANKVTQEKKVLEVHVEKGMQHGQKIAFEGQADEAPDTITGDIVFILQLKEHPKFKRKFDDLYV 274 (334)
Q Consensus 195 ~G~G~~~~~~~~C~~C~G~g~~~~~~~~~v~Ip~G~~~G~~i~l~g~G~~~~~~~~GDL~v~i~v~~~~~f~r~g~dL~~ 274 (334)
+|+|+++..+++|+.|+|.|++.+.++++|+||||+++|++|+|+|+|++.+++.+|||||+|++++|+.|+|+|+|||+
T Consensus 87 ~G~G~~i~~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~ir~~g~G~~~~~g~~GDl~v~i~v~~h~~F~R~G~DL~~ 166 (248)
T 1nlt_A 87 HGTGDIIDPKDRCKSCNGKKVENERKILEVHVEPGMKDGQRIVFKGEADQAPDVIPGDVVFIVSERPHKSFKRDGDDLVY 166 (248)
T ss_dssp SSSSSCCCTTSBCSSSTTSCEEEEEEEEEEEECTTCCTTCEEEETTCSCCCTTCBCCCEEEEEEECCCSSCEEETTEEEE
T ss_pred CCcCEEeccCCCCcccCCCceEeeeEEEEEEECCCccCCCEEEEeeeecCCCCCCcceEEEEEEEecCccceeeCCEEEE
Confidence 99999996679999999999999999999999999999999999999999888899999999999999999999999999
Q ss_pred EEecCHHHHhCCCeEEEecCCCCeEEEEcCCCceecCCccc------CC----CCCccEEEEEEEEEee
Q 019908 275 DHTLSLTEALCGFQFALTHLDGRQLLIKSNPGEIIKPGIYF------DN----FTSVNLYLHEYCFLWL 333 (334)
Q Consensus 275 ~~~I~l~~al~G~~~~i~tldG~~l~v~i~~g~~i~~g~~~------~~----~~~GdL~v~~~V~~p~ 333 (334)
+++|||+|||+|++++|+||||+.+.|+||+|+++++|... +| ..+|||||+|+|+||-
T Consensus 167 ~~~Isl~eAllG~~i~v~tldG~~~~i~ip~g~vt~~g~~~rl~g~Gmp~~~~~~~GDL~V~~~V~~P~ 235 (248)
T 1nlt_A 167 EAEIDLLTAIAGGEFALEHVSGDWLKVGIVPGEVIAPGMRKVIEGKGMPIPKYGGYGNLIIKFTIKDPE 235 (248)
T ss_dssp EEEEEHHHHHHCBCCEEECSSSCEEECCBCTTTTCSTTCEEEETTCSCBCSSSCSBCCEEEEEEEECCC
T ss_pred EEEeCHHHHhcCCEEEEeCCCCCEEEEEeCCCCeeCCCeEEEEcCCCCccCCCCCcCCEEEEEEEECCC
Confidence 99999999999999999999998899999999888888754 22 1589999999999993
No 3
>3agx_A DNAJ homolog subfamily B member 1; chaperone; 1.85A {Homo sapiens} PDB: 3agy_A 3agz_A 2qld_A
Probab=100.00 E-value=1.3e-37 Score=269.38 Aligned_cols=152 Identities=34% Similarity=0.517 Sum_probs=128.4
Q ss_pred cccEEEeeeeceeeeecCcccccccceeeeCCCCCCCCCccCCcccCCCCCCCcEEEEEEeeccceeeEEEEeCCCCccc
Q 019908 118 GEDVVHTLKVSLEDLYNGTTKKLSLSRNILCPKCKGKGSKSGALGKCYGCQGTGMKITTRQIGLGMIQQMQHVCPECRGA 197 (334)
Q Consensus 118 ~~di~~~l~~sl~e~~~G~~~~i~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~ 197 (334)
++|+.++|++||+|+|+|+++++.+.+ +
T Consensus 2 ~~d~~~~l~islee~~~G~~k~i~i~~---------------------------------------------~------- 29 (181)
T 3agx_A 2 DPPVTHDLRVSLEEIYSGCTKKMKISH---------------------------------------------K------- 29 (181)
T ss_dssp ----CEEEEECHHHHHHCEEEEEEEEE---------------------------------------------E-------
T ss_pred CCCEEEEEEEEHHHhcCCcEEEEEEec---------------------------------------------c-------
Confidence 357889999999999999999986542 2
Q ss_pred eEEEccCCCCCccCCCceeEEeEEEEEEeccCccCCcEEEEecCcCCCCCCCCcCEEEEEEEEeCCCceeecCcEEEEEe
Q 019908 198 GEVISERDKCPQCKANKVTQEKKVLEVHVEKGMQHGQKIAFEGQADEAPDTITGDIVFILQLKEHPKFKRKFDDLYVDHT 277 (334)
Q Consensus 198 G~~~~~~~~C~~C~G~g~~~~~~~~~v~Ip~G~~~G~~i~l~g~G~~~~~~~~GDL~v~i~v~~~~~f~r~g~dL~~~~~ 277 (334)
|+.|+|.+++.+.++++|+||||+++|++|+|+|+|++.+++.+|||||+|++++|+.|+|+|+||+++++
T Consensus 30 ---------c~~c~G~g~~~~~~~l~V~Ip~G~~~G~~ir~~G~G~~~~~g~~GDl~v~i~~~~h~~F~R~G~DL~~~~~ 100 (181)
T 3agx_A 30 ---------RLNPDGKSIRNEDKILTIEVKKGWKEGTKITFPKEGDQTSNNIPADIVFVLKDKPHNIFKRDGSDVIYPAR 100 (181)
T ss_dssp ---------EECTTSSCEEEEEEEEEEEECTTCCTTCEEEETTCSCCCSSSCCCCEEEEEEECCCSSCEEETTEEEEEEE
T ss_pred ---------cCCCCCceEEEEeEEEEEEECCCccCCcEEEEeeccccCCCCCcccEEEEEEEeccccceeeCCcEEEEEE
Confidence 23333333456688999999999999999999999999888899999999999999999999999999999
Q ss_pred cCHHHHhCCCeEEEecCCCCeEEEEcCCCceecCCccc------C-----CCCCccEEEEEEEEEe
Q 019908 278 LSLTEALCGFQFALTHLDGRQLLIKSNPGEIIKPGIYF------D-----NFTSVNLYLHEYCFLW 332 (334)
Q Consensus 278 I~l~~al~G~~~~i~tldG~~l~v~i~~g~~i~~g~~~------~-----~~~~GdL~v~~~V~~p 332 (334)
|||+||++|+++.|+||||+.+.|++|++ +++|... + ++.+|||||+|+|.||
T Consensus 101 Isl~eAllG~~i~v~tldG~~~~i~i~~~--t~~g~~~rl~g~Gmp~~~~~~~~GDL~V~~~V~~P 164 (181)
T 3agx_A 101 ISLREALCGCTVNVPTLDGRTIPVVFKDV--IRPGMRRKVPGEGLPLPKTPEKRGDLIIEFEVIFP 164 (181)
T ss_dssp EEHHHHHHCEEEEEECTTSCEEEEEECSC--CCTTCEEEETTCSCBCSSSTTSBCCEEEEEEEECC
T ss_pred cCHHHHhCCCEEEeECCCCCEEEEECCCc--cCCCcEEEECCcCCCcCCCCCCcCCEEEEEEEECC
Confidence 99999999999999999998888998765 4565533 2 3468999999999999
No 4
>2q2g_A HSP40 protein, heat shock 40 kDa protein, putative (fragment); malaria, structural genomics, structural genomics consortium, SGC; 1.90A {Cryptosporidium parvum iowa II}
Probab=100.00 E-value=4.7e-35 Score=253.28 Aligned_cols=150 Identities=32% Similarity=0.480 Sum_probs=133.1
Q ss_pred cccEEEeeeeceeeeecCcccccccceeeeCCCCCCCCCccCCcccCCCCCCCcEEEEEEeeccceeeEEEEeCCCCccc
Q 019908 118 GEDVVHTLKVSLEDLYNGTTKKLSLSRNILCPKCKGKGSKSGALGKCYGCQGTGMKITTRQIGLGMIQQMQHVCPECRGA 197 (334)
Q Consensus 118 ~~di~~~l~~sl~e~~~G~~~~i~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~ 197 (334)
+.|+.+++++||+|+|+|+++++.+.+.+.|+.
T Consensus 3 g~d~~~~l~islee~~~G~~k~i~~~~~~~c~~----------------------------------------------- 35 (180)
T 2q2g_A 3 PRSHEVPLLVTLEELYLGKRKKIKVTRKRFIEH----------------------------------------------- 35 (180)
T ss_dssp -CEEEEEEEECHHHHHHCEEEEEEEEEEEEETT-----------------------------------------------
T ss_pred CCCEEEEEEeeHHHhcCCcEEEEEEeEEEecCC-----------------------------------------------
Confidence 579999999999999999999999998877631
Q ss_pred eEEEccCCCCCccCCCceeEEeEEEEEEeccCccCCcEEEEecCcCC-CCCCCCcCEEEEEEEEeCCCceeecCcEEEEE
Q 019908 198 GEVISERDKCPQCKANKVTQEKKVLEVHVEKGMQHGQKIAFEGQADE-APDTITGDIVFILQLKEHPKFKRKFDDLYVDH 276 (334)
Q Consensus 198 G~~~~~~~~C~~C~G~g~~~~~~~~~v~Ip~G~~~G~~i~l~g~G~~-~~~~~~GDL~v~i~v~~~~~f~r~g~dL~~~~ 276 (334)
+++.+.++++|+||||+++|++|+|+|+|++ .+++.+|||||+|++++|+.|+|+|+||++++
T Consensus 36 ----------------g~~~~~~~l~V~Ip~G~~~G~~ir~~g~G~~g~~gg~~GDl~v~i~~~~h~~F~R~G~DL~~~~ 99 (180)
T 2q2g_A 36 ----------------KVRNEENIVEVEIKPGWKDGTKLTYSGEGDQESPGTSPGDLVLIIQTKTHPRFTRDDCHLIMKV 99 (180)
T ss_dssp ----------------EEEEEEEEEEEEECTTCCTTCEEEETTCSCCSSTTSCCCEEEEEEEECCCSSCEEETTEEEEEE
T ss_pred ----------------ceEEeeEEEEEEECCCCcCCcEEEEeeccCCCCCCCccccEEEEEEEEecccEEEcCCEEEEEE
Confidence 1245578899999999999999999999999 68889999999999999999999999999999
Q ss_pred ecCHHHHhCCCeEEEecCCCCeEEEEcCCCceecCCccc------C-----CCCCccEEEEEEEEEe
Q 019908 277 TLSLTEALCGFQFALTHLDGRQLLIKSNPGEIIKPGIYF------D-----NFTSVNLYLHEYCFLW 332 (334)
Q Consensus 277 ~I~l~~al~G~~~~i~tldG~~l~v~i~~g~~i~~g~~~------~-----~~~~GdL~v~~~V~~p 332 (334)
+|||+||++|+++.|+||||+.+.|++|++ +++|... + ++.+|||||+|+|.||
T Consensus 100 ~Isl~eAllG~~i~v~tldG~~v~i~ip~~--t~~g~~~rl~g~Gmp~~~~~~~~GDL~V~~~V~~P 164 (180)
T 2q2g_A 100 TIPLVRALTGFTCPVTTLDNRNLQIPIKEI--VNPKTRKIVPNEGMPIKNQPGQKGDLILEFDICFP 164 (180)
T ss_dssp EEEHHHHHHCEEEEEECTTCCEEEEEECSC--CCTTCEEEETTCSCBCSSSTTCBCCEEEEEEEECC
T ss_pred EcCHHHHhCCCEEEeeCCCCCEEEEECCCc--cCCCEEEEECCcCCCcCCCCCCcCCEEEEEEEECC
Confidence 999999999999999999998888988865 4665533 2 2468999999999999
No 5
>1c3g_A Heat shock protein 40; beta sheets, short helices, chaperone; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 PDB: 2b26_A
Probab=100.00 E-value=2.6e-33 Score=240.15 Aligned_cols=147 Identities=30% Similarity=0.421 Sum_probs=126.9
Q ss_pred ccEEEeeeeceeeeecCcccccccceeeeCCCCCCCCCccCCcccCCCCCCCcEEEEEEeeccceeeEEEEeCCCCccce
Q 019908 119 EDVVHTLKVSLEDLYNGTTKKLSLSRNILCPKCKGKGSKSGALGKCYGCQGTGMKITTRQIGLGMIQQMQHVCPECRGAG 198 (334)
Q Consensus 119 ~di~~~l~~sl~e~~~G~~~~i~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G 198 (334)
+|+.+++++||+|+|+|+++++.+.+.. + .
T Consensus 1 ~d~~~~l~islee~~~G~~k~i~~~~~~----~------------------~---------------------------- 30 (170)
T 1c3g_A 1 ETVQVNLPVSLEDLFVGKKKSFKIGRKG----P------------------H---------------------------- 30 (170)
T ss_dssp CEEEEEEEECHHHHHHTCEEEEEEEEEE----T------------------T----------------------------
T ss_pred CCEEEEEEeEHHHhhCCcEEEEEEEEec----C------------------C----------------------------
Confidence 3789999999999999999999887541 0 0
Q ss_pred EEEccCCCCCccCCCceeEEeEEEEEEeccCccCCcEEEEecCcCC-CCCCCCcCEEEEEEEEeCCCceeecCcEEEEEe
Q 019908 199 EVISERDKCPQCKANKVTQEKKVLEVHVEKGMQHGQKIAFEGQADE-APDTITGDIVFILQLKEHPKFKRKFDDLYVDHT 277 (334)
Q Consensus 199 ~~~~~~~~C~~C~G~g~~~~~~~~~v~Ip~G~~~G~~i~l~g~G~~-~~~~~~GDL~v~i~v~~~~~f~r~g~dL~~~~~ 277 (334)
|.+ +.++++|+||||+++|++|+|+|+|++ .+++.+|||||+|++++|+.|+|+|+||+++++
T Consensus 31 ---------------G~~-~~~~l~V~Ip~G~~~G~~ir~~g~G~~~~~gg~~GDl~v~i~v~~h~~F~R~G~DL~~~~~ 94 (170)
T 1c3g_A 31 ---------------GAS-EKTQIDIQLKPGWKAGTKITYKNQGDYNPQTGRRKTLQFVIQEKSHPNFKRDGDDLIYTLP 94 (170)
T ss_dssp ---------------TEE-EEEEEEEECCTTCCTTCEEEESSCSSBCSSSSCBCEEEEEEEECCCSSEEEETTEEEEEEC
T ss_pred ---------------CcE-EeEEEEEEeCCCccCCCEEEEeccccCCCCCCccccEEEEEEEccCCccEEeCCcEeEEEE
Confidence 112 467899999999999999999999995 578889999999999999999999999999999
Q ss_pred cCHHHHhCCCeEEEecCCCCeEEEEcCCCceecCCccc------C-----CCCCccEEEEEEEEEee
Q 019908 278 LSLTEALCGFQFALTHLDGRQLLIKSNPGEIIKPGIYF------D-----NFTSVNLYLHEYCFLWL 333 (334)
Q Consensus 278 I~l~~al~G~~~~i~tldG~~l~v~i~~g~~i~~g~~~------~-----~~~~GdL~v~~~V~~p~ 333 (334)
|||+||++|+++.|+||||+.+.|++|++ +++|... + ++.+|||||+|+|.||-
T Consensus 95 Isl~eAllG~~~~v~tldG~~~~i~i~~~--t~~g~~~rl~g~G~p~~~~~~~~GDL~V~~~V~~P~ 159 (170)
T 1c3g_A 95 LSFKESLLGFSKTIQTIDGRTLPLSRVQP--VQPSQTSTYPGQGMPTPKNPSQRGNLIVKYKVDYPI 159 (170)
T ss_dssp CBHHHHHHCEEEEEECSSSCEEEEEESSC--CCTTCEEECTTCSCBCSSCTTSBCCEEEEECCBCCS
T ss_pred cCHHHHhCCCeEEeeCCCCCEEEEECCCc--cCCCcEEEEeCCCCCcCCCCCCCCCEEEEEEEECCC
Confidence 99999999999999999998888998865 4555433 2 23589999999999993
No 6
>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A
Probab=99.88 E-value=1.5e-23 Score=164.96 Aligned_cols=90 Identities=52% Similarity=0.881 Sum_probs=66.1
Q ss_pred ccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCh----HHHHHHHHHHhhcCCCcccchhcccChhhhhcCCCCCC
Q 019908 11 NTKYYEILGVSKSATEDELKKAYRKAAMKNHPDKGGDP----EKFKELGQAYEVLSDPEKRDIYDQYGEDALKEGMGGAG 86 (334)
Q Consensus 11 ~~~~y~iLgv~~~a~~~eik~ayr~la~~~hPd~~~~~----~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~~~~~~~~ 86 (334)
..|||+||||+++|+.+|||+|||+|+++||||++++. ++|++|++||++|+||.+|+.||++|+.++..+..+++
T Consensus 2 ~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~~~~~~~~~~ 81 (103)
T 1bq0_A 2 KQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAAYDQYGHAAFEQGGMGGG 81 (103)
T ss_dssp CCCSTTTTSSCSSCCHHHHHHHHHHHHTTTCTTTCTTTCTHHHHHHHHTTTTTSTTCSHHHHHTTTSTTTSSCSCC----
T ss_pred CCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHHHhhhhhcccCcCCC
Confidence 46899999999999999999999999999999998742 79999999999999999999999999988765321111
Q ss_pred ---CCCCcchhhccccC
Q 019908 87 ---AAHNPFDIFESFFG 100 (334)
Q Consensus 87 ---~~~~~~d~f~~~Fg 100 (334)
++.++.++|++||+
T Consensus 82 ~~~~~~~~~~~f~~~f~ 98 (103)
T 1bq0_A 82 GFGGGADFSDIFGDVFG 98 (103)
T ss_dssp -----------------
T ss_pred CCCCCCCHHHHHHHHHH
Confidence 12245677777775
No 7
>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.86 E-value=3.6e-22 Score=152.50 Aligned_cols=73 Identities=51% Similarity=0.880 Sum_probs=68.2
Q ss_pred CCccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCh---HHHHHHHHHHhhcCCCcccchhcccChhhhhcC
Q 019908 9 SNNTKYYEILGVSKSATEDELKKAYRKAAMKNHPDKGGDP---EKFKELGQAYEVLSDPEKRDIYDQYGEDALKEG 81 (334)
Q Consensus 9 ~~~~~~y~iLgv~~~a~~~eik~ayr~la~~~hPd~~~~~---~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~~~ 81 (334)
....+||+||||+++|+.+|||+|||+|+++||||+++++ ++|++|++||++|+||.+|+.||++|..++..+
T Consensus 4 ~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~~~ 79 (88)
T 2ctr_A 4 GSSGSYYDILGVPKSASERQIKKAFHKLAMKYHPDKNKSPDAEAKFREIAEAYETLSDANRRKEYDTLGHSAFTSG 79 (88)
T ss_dssp CCCCSHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCCSHHHHHHHHHHHHHHHHHHSSHHHHHHHHTCHHHHTCS
T ss_pred CCCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCChHHHHHHHHHHHHHHHHCCHHHHHHHHHhCccccccC
Confidence 4678999999999999999999999999999999999874 799999999999999999999999999888754
No 8
>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae}
Probab=99.85 E-value=3.2e-22 Score=154.01 Aligned_cols=75 Identities=59% Similarity=0.953 Sum_probs=69.2
Q ss_pred CCCCccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-hHHHHHHHHHHhhcCCCcccchhcccChhhhhcC
Q 019908 7 RRSNNTKYYEILGVSKSATEDELKKAYRKAAMKNHPDKGGD-PEKFKELGQAYEVLSDPEKRDIYDQYGEDALKEG 81 (334)
Q Consensus 7 ~~~~~~~~y~iLgv~~~a~~~eik~ayr~la~~~hPd~~~~-~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~~~ 81 (334)
.+....|||+||||+++|+.+|||+|||+|+++||||+++. .++|++|++||++|+||.+|+.||++|.+++..+
T Consensus 3 ~m~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~~~~~ 78 (92)
T 2o37_A 3 AMVKETKLYDLLGVSPSANEQELKKGYRKAALKYHPDKPTGDTEKFKEISEAFEILNDPQKREIYDQYGLEAARSG 78 (92)
T ss_dssp -CCSCCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCTTSTTCCHHHHHHHHHHHHHHTSHHHHHHHHHHCHHHHHTT
T ss_pred ccccCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChHHHHHHHHHHHHHHCCHHHHHHHHHHCHHHhhcc
Confidence 35678899999999999999999999999999999999964 5899999999999999999999999999988753
No 9
>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A
Probab=99.85 E-value=2.7e-22 Score=147.79 Aligned_cols=70 Identities=59% Similarity=0.917 Sum_probs=62.9
Q ss_pred CCCCccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCh-HHHHHHHHHHhhcCCCcccchhcccChh
Q 019908 7 RRSNNTKYYEILGVSKSATEDELKKAYRKAAMKNHPDKGGDP-EKFKELGQAYEVLSDPEKRDIYDQYGED 76 (334)
Q Consensus 7 ~~~~~~~~y~iLgv~~~a~~~eik~ayr~la~~~hPd~~~~~-~~f~~i~~Ay~~L~d~~~r~~YD~~G~~ 76 (334)
.|....+||+||||+++|+.++||+|||+|+++||||++++. +.|++|++||++|+||.+|+.||++|++
T Consensus 3 ~m~~~~~~y~iLgl~~~a~~~eIk~ayr~l~~~~HPD~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~ 73 (73)
T 2och_A 3 AMVKETGYYDVLGVKPDASDNELKKAYRKMALKFHPDKNPDGAEQFKQISQAYEVLSDEKKRQIYDQGGEE 73 (73)
T ss_dssp ---CCCCHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCTTCHHHHHHHHHHHHHHTSHHHHHHHHHTC--
T ss_pred cccCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCcCHHHHHHHHHHHHHHHCCHHHHHHHHhcCCC
Confidence 366789999999999999999999999999999999999864 8999999999999999999999999863
No 10
>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1
Probab=99.85 E-value=5.9e-22 Score=147.51 Aligned_cols=69 Identities=54% Similarity=1.091 Sum_probs=64.6
Q ss_pred ccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCh---HHHHHHHHHHhhcCCCcccchhcccChhhhh
Q 019908 11 NTKYYEILGVSKSATEDELKKAYRKAAMKNHPDKGGDP---EKFKELGQAYEVLSDPEKRDIYDQYGEDALK 79 (334)
Q Consensus 11 ~~~~y~iLgv~~~a~~~eik~ayr~la~~~hPd~~~~~---~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~ 79 (334)
..|||+||||+++|+.+|||+|||+|+++||||+++++ +.|++|++||++|+||.+|+.||++|.+++.
T Consensus 2 ~~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~ 73 (77)
T 1hdj_A 2 GKDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRKREIFDRYGEEGLK 73 (77)
T ss_dssp CCCSHHHHTCCTTCCHHHHHHHHHHHHHTTCTTTCCCTTHHHHHHHHHHHHHHTTCHHHHHHHHHTCGGGCC
T ss_pred CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCCHHHHHHHHHHcccccc
Confidence 36899999999999999999999999999999999754 8999999999999999999999999987765
No 11
>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.84 E-value=1.1e-21 Score=147.75 Aligned_cols=70 Identities=51% Similarity=0.894 Sum_probs=64.8
Q ss_pred CCCccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCh-----HHHHHHHHHHhhcCCCcccchhcccChhh
Q 019908 8 RSNNTKYYEILGVSKSATEDELKKAYRKAAMKNHPDKGGDP-----EKFKELGQAYEVLSDPEKRDIYDQYGEDA 77 (334)
Q Consensus 8 ~~~~~~~y~iLgv~~~a~~~eik~ayr~la~~~hPd~~~~~-----~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~ 77 (334)
.+...+||+||||+++|+.+|||+|||+|+++||||++++. ++|++|++||++|+||.+|+.||++|+.+
T Consensus 5 ~~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~~ 79 (82)
T 2ej7_A 5 SSGMVDYYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSDAKKRDIYDRYGSGP 79 (82)
T ss_dssp CSSSCCHHHHTTCCTTCCHHHHHHHHHHHHTTSCTTTCSTTHHHHHHHHHHHHHHHHHHSSTTHHHHHHHTCCCS
T ss_pred CCCCcCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHHCCHHHHHHHHHcCccc
Confidence 45678999999999999999999999999999999999863 68999999999999999999999999754
No 12
>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=1.4e-21 Score=150.41 Aligned_cols=74 Identities=50% Similarity=0.820 Sum_probs=67.2
Q ss_pred CCCCccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCh-----HHHHHHHHHHhhcCCCcccchhcccChhhhhc
Q 019908 7 RRSNNTKYYEILGVSKSATEDELKKAYRKAAMKNHPDKGGDP-----EKFKELGQAYEVLSDPEKRDIYDQYGEDALKE 80 (334)
Q Consensus 7 ~~~~~~~~y~iLgv~~~a~~~eik~ayr~la~~~hPd~~~~~-----~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~~ 80 (334)
......|||+||||+++|+.+|||+|||+|+++||||++++. ++|++|++||++|+||.+|+.||++|..++..
T Consensus 4 ~~~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~~ 82 (92)
T 2dmx_A 4 GSSGMANYYEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSDSKKRSLYDRAGCDSWRA 82 (92)
T ss_dssp CCCCCCCHHHHHTCCTTCCTTHHHHHHHHHHHHTCTTTCSSCSHHHHHHHHHHHHHHHHHHSHHHHHHHHHHCSCSSCC
T ss_pred CCCCCcCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCccHHHHHHHHHHHHHHHHHHCCHHHHHHHHHhCcccccC
Confidence 345678999999999999999999999999999999999852 78999999999999999999999999876654
No 13
>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=1.5e-21 Score=145.71 Aligned_cols=69 Identities=57% Similarity=0.992 Sum_probs=64.5
Q ss_pred CCCccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCh---HHHHHHHHHHhhcCCCcccchhcccChh
Q 019908 8 RSNNTKYYEILGVSKSATEDELKKAYRKAAMKNHPDKGGDP---EKFKELGQAYEVLSDPEKRDIYDQYGED 76 (334)
Q Consensus 8 ~~~~~~~y~iLgv~~~a~~~eik~ayr~la~~~hPd~~~~~---~~f~~i~~Ay~~L~d~~~r~~YD~~G~~ 76 (334)
.....|||+||||+++|+.+|||+|||+|+++||||+++++ +.|++|++||++|+||.+|+.||++|..
T Consensus 3 ~~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~ 74 (78)
T 2ctp_A 3 SGSSGDYYEILGVSRGASDEDLKKAYRRLALKFHPDKNHAPGATEAFKAIGTAYAVLSNPEKRKQYDQFGSG 74 (78)
T ss_dssp CSCSCCHHHHHTCCTTCCHHHHHHHHHHHHTTSCTTTCSSHHHHHHHHHHHHHHHHHTSHHHHHHHHHTCSC
T ss_pred CCCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCCHHHHHHHHHcCcc
Confidence 35678999999999999999999999999999999999764 8999999999999999999999999864
No 14
>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=1.8e-21 Score=145.60 Aligned_cols=69 Identities=51% Similarity=0.840 Sum_probs=63.9
Q ss_pred CCCccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC----hHHHHHHHHHHhhcCCCcccchhcccChh
Q 019908 8 RSNNTKYYEILGVSKSATEDELKKAYRKAAMKNHPDKGGD----PEKFKELGQAYEVLSDPEKRDIYDQYGED 76 (334)
Q Consensus 8 ~~~~~~~y~iLgv~~~a~~~eik~ayr~la~~~hPd~~~~----~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~ 76 (334)
.....|||+||||+++|+.+|||+|||+|+++||||++++ .++|++|++||++|+||.+|+.||++|..
T Consensus 3 ~~~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~ 75 (79)
T 2dn9_A 3 SGSSGDYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDEVKRKQYDAYGSG 75 (79)
T ss_dssp SSCCSCHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCSSCTTHHHHHHHHHHHHHHHHSHHHHHHHHHSCCC
T ss_pred CCCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhccCc
Confidence 3467899999999999999999999999999999999974 28999999999999999999999999864
No 15
>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus}
Probab=99.82 E-value=3.9e-21 Score=146.75 Aligned_cols=68 Identities=46% Similarity=0.830 Sum_probs=63.7
Q ss_pred CCccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCh---HHHHHHHHHHhhcCCCcccchhcccChh
Q 019908 9 SNNTKYYEILGVSKSATEDELKKAYRKAAMKNHPDKGGDP---EKFKELGQAYEVLSDPEKRDIYDQYGED 76 (334)
Q Consensus 9 ~~~~~~y~iLgv~~~a~~~eik~ayr~la~~~hPd~~~~~---~~f~~i~~Ay~~L~d~~~r~~YD~~G~~ 76 (334)
....|||+||||+++|+.+|||+|||+|+++||||+++++ ++|++|++||++|+||.+|+.||++|+.
T Consensus 14 ~~~~d~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~ 84 (88)
T 2cug_A 14 ALDFDPYRVLGVSRTASQADIKKAYKKLAREWHPDKNKDPGAEDRFIQISKAYEILSNEEKRTNYDHYGSG 84 (88)
T ss_dssp SSSSCHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCCSTTHHHHHHHHHHHHHHHHSHHHHHHHHHHTTC
T ss_pred cCCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHHCCHHHHHHHHHcCCC
Confidence 4678999999999999999999999999999999999754 8999999999999999999999999864
No 16
>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=1.3e-20 Score=146.99 Aligned_cols=73 Identities=33% Similarity=0.624 Sum_probs=65.3
Q ss_pred CCCCccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC----hHHHHHHHHHHhhcCCCcccchhcc--cChhhhh
Q 019908 7 RRSNNTKYYEILGVSKSATEDELKKAYRKAAMKNHPDKGGD----PEKFKELGQAYEVLSDPEKRDIYDQ--YGEDALK 79 (334)
Q Consensus 7 ~~~~~~~~y~iLgv~~~a~~~eik~ayr~la~~~hPd~~~~----~~~f~~i~~Ay~~L~d~~~r~~YD~--~G~~~~~ 79 (334)
..+...+||+||||+++|+.+|||+|||+|+++||||++++ .++|++|++||++|+||.+|+.||+ .+.+.+.
T Consensus 12 ~~~~~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~l~~~e~~~ 90 (99)
T 2yua_A 12 CSYSRTALYDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGSAEAAERFTRISQAYVVLGSATLRRKYDRGLLSDEDLR 90 (99)
T ss_dssp CSSCSSHHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCSSCSHHHHHHHHHHHHHHHTTSHHHHHHHHHTCCCHHHHH
T ss_pred CCCCccCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHhcccccccc
Confidence 35678999999999999999999999999999999999974 2799999999999999999999998 3455544
No 17
>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=7.1e-21 Score=149.83 Aligned_cols=101 Identities=24% Similarity=0.566 Sum_probs=88.5
Q ss_pred ccEEEeeeeceeeeecCcccccccceeeeCCCCCCCCCccCC-cccCCCCCCCcEEEEEEeeccceeeEEEEeCCCCccc
Q 019908 119 EDVVHTLKVSLEDLYNGTTKKLSLSRNILCPKCKGKGSKSGA-LGKCYGCQGTGMKITTRQIGLGMIQQMQHVCPECRGA 197 (334)
Q Consensus 119 ~di~~~l~~sl~e~~~G~~~~i~~~~~~~C~~C~G~G~~~~~-~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~ 197 (334)
.++.+.|+|||+|+|+|..+++.+++.+.|+.|+|+|..++. ..+|+.|+|+|++.... | +++ ++.+|+.|+|+
T Consensus 2 ~~~~~~l~vslee~~~G~~~~i~~~~~~~C~~C~G~G~~~g~~~~~C~~C~G~G~~~~~~--G--~~~-~~~~C~~C~G~ 76 (104)
T 2ctt_A 2 SSGSSGMELTFNQAAKGVNKEFTVNIMDTCERCNGKGNEPGTKVQHCHYCGGSGMETINT--G--PFV-MRSTCRRCGGR 76 (104)
T ss_dssp CCCCCCCCCCCSSCCSSSCTTCCSSCCEECSSSSSSSSCTTCCCEECSSSSSSCEEEEEE--T--TEE-EEEECSSSSSS
T ss_pred CceEEEEEEEHHHHcCCCEEEEEeeeeeECCCCcCCccCCCCCCccCCCCCCCEEEEEEe--C--CEE-EEEECCcCCCc
Confidence 467889999999999999999999999999999999998876 46899999999876543 3 443 46899999999
Q ss_pred eEEEccCCCCCccCCCceeEEeEEEEEEe
Q 019908 198 GEVISERDKCPQCKANKVTQEKKVLEVHV 226 (334)
Q Consensus 198 G~~~~~~~~C~~C~G~g~~~~~~~~~v~I 226 (334)
|+++. ++|+.|+|.|++.+.+.|+|+|
T Consensus 77 G~~i~--~~C~~C~G~G~v~~~k~l~V~~ 103 (104)
T 2ctt_A 77 GSIII--SPCVVCRGAGQAKQKKRSGPSS 103 (104)
T ss_dssp SEECS--SCCSSSSSCSEECCCCSSCCSC
T ss_pred ceECC--CcCCCCCCeeEEEEEEEEEEEc
Confidence 99986 9999999999999988888765
No 18
>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens}
Probab=99.81 E-value=4.5e-21 Score=149.43 Aligned_cols=69 Identities=57% Similarity=0.973 Sum_probs=61.9
Q ss_pred cccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCh-----HHHHHHHHHHhhcCCCcccchhcccChhhhhc
Q 019908 12 TKYYEILGVSKSATEDELKKAYRKAAMKNHPDKGGDP-----EKFKELGQAYEVLSDPEKRDIYDQYGEDALKE 80 (334)
Q Consensus 12 ~~~y~iLgv~~~a~~~eik~ayr~la~~~hPd~~~~~-----~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~~ 80 (334)
.|||+||||+++|+.+|||+|||+|+++||||++++. +.|++|++||++|+||.+|+.||++|.+++..
T Consensus 2 ~d~Y~iLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~~~a~~~f~~I~~AY~vL~d~~~R~~YD~~g~~~~~~ 75 (99)
T 2lgw_A 2 ASYYEILDVPRSASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHKREIYDRYGREGLTG 75 (99)
T ss_dssp CCHHHHSSSCTTSCHHHHHHHHHHHHHHTSTTTCCSCCHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHC----
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCccHHHHHHHHHHHHHHHHHHCCHHHHHHHHHhCcccccC
Confidence 5899999999999999999999999999999999863 78999999999999999999999999877653
No 19
>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=7.3e-21 Score=151.72 Aligned_cols=72 Identities=26% Similarity=0.578 Sum_probs=66.2
Q ss_pred CCCccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC----hHHHHHHHHHHhhcCCCcccchhcccChhhhh
Q 019908 8 RSNNTKYYEILGVSKSATEDELKKAYRKAAMKNHPDKGGD----PEKFKELGQAYEVLSDPEKRDIYDQYGEDALK 79 (334)
Q Consensus 8 ~~~~~~~y~iLgv~~~a~~~eik~ayr~la~~~hPd~~~~----~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~ 79 (334)
+....|||+||||+++|+.+|||+|||+|+++||||++++ .++|++|++||++|+||.+|+.||++|..++.
T Consensus 16 ~~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~~~~~ 91 (112)
T 2ctq_A 16 SEDTEDYYTLLGCDELSSVEQILAEFKVRALECHPDKHPENPKAVETFQKLQKAKEILTNEESRARYDHWRRSQMS 91 (112)
T ss_dssp CCCCCCHHHHTTCCTTSCHHHHHHHHHHHHHTTCTTTCTTCSTHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHTCS
T ss_pred ccCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHHhhhhccC
Confidence 4567899999999999999999999999999999999984 38999999999999999999999999987653
No 20
>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.81 E-value=1.7e-20 Score=148.88 Aligned_cols=72 Identities=47% Similarity=0.828 Sum_probs=66.8
Q ss_pred CCCccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC----hHHHHHHHHHHhhcCCCcccchhcccChhhhh
Q 019908 8 RSNNTKYYEILGVSKSATEDELKKAYRKAAMKNHPDKGGD----PEKFKELGQAYEVLSDPEKRDIYDQYGEDALK 79 (334)
Q Consensus 8 ~~~~~~~y~iLgv~~~a~~~eik~ayr~la~~~hPd~~~~----~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~ 79 (334)
.....+||+||||+++|+.+|||+|||+|+++||||++++ .++|++|++||++|+||.+|+.||++|..++.
T Consensus 13 ~~~~~~~Y~vLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~g~~~~~ 88 (109)
T 2ctw_A 13 STSGESLYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHAILTDATKRNIYDKYGSLGLY 88 (109)
T ss_dssp TSCSCCHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTSTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHTCHHHHH
T ss_pred CCCCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHcCHHHHHHHHHhcccccc
Confidence 4467899999999999999999999999999999999985 27999999999999999999999999988764
No 21
>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1
Probab=99.79 E-value=4.3e-20 Score=142.70 Aligned_cols=68 Identities=34% Similarity=0.589 Sum_probs=62.5
Q ss_pred CCCCccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC----------hHHHHHHHHHHhhcCCCcccchhcccC
Q 019908 7 RRSNNTKYYEILGVSKSATEDELKKAYRKAAMKNHPDKGGD----------PEKFKELGQAYEVLSDPEKRDIYDQYG 74 (334)
Q Consensus 7 ~~~~~~~~y~iLgv~~~a~~~eik~ayr~la~~~hPd~~~~----------~~~f~~i~~Ay~~L~d~~~r~~YD~~G 74 (334)
..+...|||+||||+++|+.+|||+|||+|+++||||+++. .++|++|++||++|+||.+|+.||.+.
T Consensus 11 ~~~~~~~~y~iLgv~~~as~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l 88 (94)
T 1wjz_A 11 EQTLKKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNEETKKKYDLQR 88 (94)
T ss_dssp SSSSCSCHHHHTTCCTTCCHHHHHHHHHHTTSSSCSTTCCTTCCHHHHHHHHHHHHHHHHHHHHHSSSSHHHHHHHHS
T ss_pred ccCCCCChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCChhhhHHHHHHHHHHHHHHHHHCCHHHHHHHHHHc
Confidence 34678899999999999999999999999999999999863 179999999999999999999999865
No 22
>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}
Probab=99.77 E-value=1.4e-19 Score=159.47 Aligned_cols=86 Identities=40% Similarity=0.782 Sum_probs=71.7
Q ss_pred cccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-h---HHHHHHHHHHhhcCCCcccchhcccChhhhhcCCCCCCC
Q 019908 12 TKYYEILGVSKSATEDELKKAYRKAAMKNHPDKGGD-P---EKFKELGQAYEVLSDPEKRDIYDQYGEDALKEGMGGAGA 87 (334)
Q Consensus 12 ~~~y~iLgv~~~a~~~eik~ayr~la~~~hPd~~~~-~---~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~~~~~~~~~ 87 (334)
.|||++|||+++|+.+|||+|||+||++||||++++ + ++|++|++||++|+||.+|+.||++|+.++.... ++
T Consensus 2 ~~~y~~l~~~~~a~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~f~~i~~Ay~~L~~~~~r~~yd~~~~~~~~~~~---~~ 78 (210)
T 3apq_A 2 QNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKYDKYGEKGLEDNQ---GG 78 (210)
T ss_dssp CCHHHHHTCCTTCCHHHHHHHHHHHHHHHCGGGCTTCTTHHHHHHHHHHHHHHHTSHHHHHHHHHHTTTTCCTTC---SC
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHhccccccccc---cc
Confidence 589999999999999999999999999999999964 2 7999999999999999999999999988776432 12
Q ss_pred CCCcchhhccccC
Q 019908 88 AHNPFDIFESFFG 100 (334)
Q Consensus 88 ~~~~~d~f~~~Fg 100 (334)
....+.+|...|+
T Consensus 79 ~~~~~~~~~~~fg 91 (210)
T 3apq_A 79 QYESWSYYRYDFG 91 (210)
T ss_dssp CCCCHHHHHHSSS
T ss_pred ccccccccccccc
Confidence 2334455655554
No 23
>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1
Probab=99.77 E-value=4.6e-20 Score=137.70 Aligned_cols=68 Identities=21% Similarity=0.404 Sum_probs=61.8
Q ss_pred CCCccccccccCCCCC--CCHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHhhcCCCcccchhcccChh
Q 019908 8 RSNNTKYYEILGVSKS--ATEDELKKAYRKAAMKNHPDKGGDPEKFKELGQAYEVLSDPEKRDIYDQYGED 76 (334)
Q Consensus 8 ~~~~~~~y~iLgv~~~--a~~~eik~ayr~la~~~hPd~~~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~ 76 (334)
..+..++|+||||+++ |+.+|||+|||+||++||||++++.++|++|++||++|+|+.+|.. |.||..
T Consensus 7 ~~~~~~~y~iLgl~~~~~a~~~eIk~aYr~la~~~HPDk~~~~~~f~~i~~AYe~L~~~~~r~~-~~~g~~ 76 (79)
T 1faf_A 7 RADKERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGGSHALMQELNSLWGTFKTEVYNLR-MNLGGT 76 (79)
T ss_dssp HHHHHHHHHHHTCCSSSTTCHHHHHHHHHHHHHHSSGGGSCCHHHHHHHHHHHHHHHHHHHHHT-TCCSSC
T ss_pred chhHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCHHHHHHHHHHHHHHhhHHHHHH-HhcCCc
Confidence 3455789999999999 9999999999999999999999999999999999999999999887 557754
No 24
>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulat protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C
Probab=99.76 E-value=1.9e-20 Score=159.16 Aligned_cols=68 Identities=34% Similarity=0.553 Sum_probs=61.1
Q ss_pred CCCccccccccCCCCCCC--HHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHhhcCCCcccchhcccCh
Q 019908 8 RSNNTKYYEILGVSKSAT--EDELKKAYRKAAMKNHPDKGGDPEKFKELGQAYEVLSDPEKRDIYDQYGE 75 (334)
Q Consensus 8 ~~~~~~~y~iLgv~~~a~--~~eik~ayr~la~~~hPd~~~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~ 75 (334)
..+..+||++|||+++|+ .+|||+|||++|+++|||+++++++|++|++||++|+||.+|+.||+||.
T Consensus 7 ~~~~~d~Y~vLGl~~~as~~~~eIKkAYRkLa~~~HPDk~~~~e~F~~I~~AYevLsdp~kR~~YD~~G~ 76 (174)
T 2pf4_E 7 REESLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDEEKMKKMNTLYKKMEDGVKYAHQPDFGG 76 (174)
T ss_dssp HHHHHHHHHTTTCCGGGTTCHHHHHHHHHHHGGGCSCC---CCTTTTHHHHHHHHHHHHHHHHTSCGGGG
T ss_pred ccccccHHHHcCCCCCCCcCHHHHHHHHHHHHHHHCcCCCCCHHHHHHHHHHHHHhCCHHHHHHHhccCC
Confidence 345689999999999999 69999999999999999999999999999999999999999999999995
No 25
>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein; 3.20A {Simian virus 40} SCOP: a.2.3.1
Probab=99.76 E-value=3.9e-20 Score=147.37 Aligned_cols=66 Identities=33% Similarity=0.554 Sum_probs=62.9
Q ss_pred CccccccccCCCCCCCH--HHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHhhcCCCcccchhcccCh
Q 019908 10 NNTKYYEILGVSKSATE--DELKKAYRKAAMKNHPDKGGDPEKFKELGQAYEVLSDPEKRDIYDQYGE 75 (334)
Q Consensus 10 ~~~~~y~iLgv~~~a~~--~eik~ayr~la~~~hPd~~~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~ 75 (334)
+..+||+||||+++|+. ++||+|||+||++||||++++.++|++|++||++|+||.+|+.||.+|.
T Consensus 6 ~~~~~Y~iLgv~~~as~~~~eIk~aYr~la~~~HPDk~~~~e~f~~I~~AYevL~d~~~R~~~~~~~~ 73 (114)
T 1gh6_A 6 ESLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDEEKMKKMNTLYKKMEDGVKYAHQPDFGG 73 (114)
T ss_dssp HHHHHHHHTTCCTTSCSCHHHHHHHHHHTTTTCCTTTCCTTTTTHHHHHHHHHHHHHHHSCCSSCCSC
T ss_pred hhhhHHHHcCCCCCCCcCHHHHHHHHHHHHHHHCCCCCccHHHHHHHHHHHHHHCCHHHHHHhhhccc
Confidence 45789999999999999 9999999999999999999999999999999999999999999999874
No 26
>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans}
Probab=99.75 E-value=1.7e-19 Score=143.15 Aligned_cols=68 Identities=35% Similarity=0.618 Sum_probs=63.4
Q ss_pred CCCccccccccCCCCCC-CHHHHHHHHHHHHHHhCCCCCCC-------hHHHHHHHHHHhhcCCCcccchhcccCh
Q 019908 8 RSNNTKYYEILGVSKSA-TEDELKKAYRKAAMKNHPDKGGD-------PEKFKELGQAYEVLSDPEKRDIYDQYGE 75 (334)
Q Consensus 8 ~~~~~~~y~iLgv~~~a-~~~eik~ayr~la~~~hPd~~~~-------~~~f~~i~~Ay~~L~d~~~r~~YD~~G~ 75 (334)
.....|||+||||+++| +.+|||+|||+|+++||||++++ .++|++|++||++|+||.+|+.||+++.
T Consensus 11 ~~~~~~~y~iLgv~~~a~s~~eIk~aYr~l~~~~HPDk~~~~~~~~~a~~~f~~i~~AY~~L~d~~~R~~YD~~~~ 86 (109)
T 2qsa_A 11 YCGLENCYDVLEVNREEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYETLKDDEAKTNYDYYLD 86 (109)
T ss_dssp TTTTSCHHHHTTCCGGGCCHHHHHHHHHHHHHHTCGGGCCSHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHH
T ss_pred HcCCCCHHHHcCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccccHHHHHHHHHHHHHHHHHCCHHHHHHHHHhcc
Confidence 34678999999999999 99999999999999999999986 2799999999999999999999999875
No 27
>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens}
Probab=99.73 E-value=1.4e-18 Score=146.45 Aligned_cols=68 Identities=34% Similarity=0.571 Sum_probs=62.3
Q ss_pred CCCccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCh----------HHHHHHHHHHhhcCCCcccchhcccCh
Q 019908 8 RSNNTKYYEILGVSKSATEDELKKAYRKAAMKNHPDKGGDP----------EKFKELGQAYEVLSDPEKRDIYDQYGE 75 (334)
Q Consensus 8 ~~~~~~~y~iLgv~~~a~~~eik~ayr~la~~~hPd~~~~~----------~~f~~i~~Ay~~L~d~~~r~~YD~~G~ 75 (334)
.+...|||+||||+++|+.++||+|||+|+++||||+++++ ++|++|++||++|+||.+|+.||..+.
T Consensus 6 ~~~~~~~y~iLgv~~~a~~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~a~~~f~~i~~Ay~~L~dp~~R~~Yd~~~~ 83 (155)
T 2l6l_A 6 QMPKKDWYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKILGNEETKREYDLQRC 83 (155)
T ss_dssp CCCCSHHHHHHTCCTTCCHHHHHHHHHHHHHHHSCCCCCCCCTTHHHHHHHHHHHHHHHHHHHSSSHHHHCHHHHHHH
T ss_pred cCCCCChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCchhHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHcc
Confidence 35678999999999999999999999999999999998643 799999999999999999999998654
No 28
>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=1.5e-18 Score=132.90 Aligned_cols=61 Identities=38% Similarity=0.524 Sum_probs=56.3
Q ss_pred CCccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCh---HHHHHHHHHHhhcCCCcccch
Q 019908 9 SNNTKYYEILGVSKSATEDELKKAYRKAAMKNHPDKGGDP---EKFKELGQAYEVLSDPEKRDI 69 (334)
Q Consensus 9 ~~~~~~y~iLgv~~~a~~~eik~ayr~la~~~hPd~~~~~---~~f~~i~~Ay~~L~d~~~r~~ 69 (334)
....|||+||||+++|+.+|||+|||+|+++||||+++++ ++|++|++||++|+|+.+|+.
T Consensus 24 ~~~~~~y~iLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~~~~~f~~i~~Ay~~L~d~~~R~~ 87 (90)
T 2ys8_A 24 RNSKDSWDMLGVKPGASRDEVNKAYRKLAVLLHPDKCVAPGSEDAFKAVVNARTALLKNIKSGP 87 (90)
T ss_dssp HTCSSHHHHHTCCTTCCHHHHHHHHHHHHHHHCTTTCCCTTHHHHHHHHHHHHHHHHHHHCCSC
T ss_pred hcCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCCcccccC
Confidence 3568999999999999999999999999999999999654 899999999999999999874
No 29
>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=99.72 E-value=1.8e-18 Score=126.42 Aligned_cols=65 Identities=28% Similarity=0.434 Sum_probs=58.4
Q ss_pred CCCCCCCccccccccCCCC-CCCHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHhhcCCCcccc
Q 019908 4 RTPRRSNNTKYYEILGVSK-SATEDELKKAYRKAAMKNHPDKGGDPEKFKELGQAYEVLSDPEKRD 68 (334)
Q Consensus 4 ~~~~~~~~~~~y~iLgv~~-~a~~~eik~ayr~la~~~hPd~~~~~~~f~~i~~Ay~~L~d~~~r~ 68 (334)
.....+...++|+||||++ +|+.+|||+|||+|+++||||+++++++|++|++||++|+|+..|+
T Consensus 6 ~~~~~m~~~~~y~iLgl~~~~a~~~eIk~ayr~l~~~~HPDk~g~~~~f~~i~~Aye~L~~~~~rk 71 (71)
T 2guz_A 6 GFDPKMNSKEALQILNLTENTLTKKKLKEVHRKIMLANHPDKGGSPFLATKINEAKDFLEKRGISK 71 (71)
T ss_dssp CCCSSCCHHHHHHHTTCCTTTCCHHHHHHHHHHHHHHHCGGGTCCHHHHHHHHHHHHHHHHHCCCC
T ss_pred CCCCCCCHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHhhhhhcC
Confidence 3445567789999999999 7999999999999999999999999999999999999999887663
No 30
>3i38_A Putative chaperone DNAJ; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.30A {Klebsiella pneumoniae subsp}
Probab=99.68 E-value=5.2e-17 Score=128.48 Aligned_cols=71 Identities=20% Similarity=0.200 Sum_probs=61.5
Q ss_pred EeCCCceeecCcEEEEEecCHHHHhCCCeEEEecCCCCeEEEEcCCCceecCCccc------CC--CCCccEEEEEEEEE
Q 019908 260 KEHPKFKRKFDDLYVDHTLSLTEALCGFQFALTHLDGRQLLIKSNPGEIIKPGIYF------DN--FTSVNLYLHEYCFL 331 (334)
Q Consensus 260 ~~~~~f~r~g~dL~~~~~I~l~~al~G~~~~i~tldG~~l~v~i~~g~~i~~g~~~------~~--~~~GdL~v~~~V~~ 331 (334)
++|+.|+|+|+||+++++|||.||++|+++.|+||||. +.|+||+| +++|... +| +.+|||||+|+|.|
T Consensus 2 kph~~F~R~G~DL~~~~~Isl~eAl~G~~i~v~tldG~-~~v~ip~g--~~~G~~~rl~G~G~p~~~~~GDL~v~~~V~~ 78 (109)
T 3i38_A 2 NAHPLFDIVGHNLEIVLPLAPWEAALGAKVTVPTLKES-ILLTVPPG--SQAGQRLRIKGKGLVSKTHTGDLFAVIKIVM 78 (109)
T ss_dssp --CCCCEEETTEEEEEEEECHHHHHHCEEEEECCSSSC-EEEEECTT--CCTTCEEEETTCSCBCSSCBCCEEEEEEECC
T ss_pred CCCCCeEEECCEEEEEEEcCHHHHhCCCEEEEEcCCCC-EEEeeCCC--cCcCeEEEECCccCCCCCCCcCEEEEEEEEC
Confidence 68999999999999999999999999999999999995 89999988 5676644 22 36899999999999
Q ss_pred ee
Q 019908 332 WL 333 (334)
Q Consensus 332 p~ 333 (334)
|-
T Consensus 79 P~ 80 (109)
T 3i38_A 79 PT 80 (109)
T ss_dssp CS
T ss_pred CC
Confidence 94
No 31
>1xao_A YDJ1, mitochondrial protein import protein MAS5; beta sheets, chaperone; 2.07A {Saccharomyces cerevisiae}
Probab=99.68 E-value=5.3e-17 Score=130.92 Aligned_cols=70 Identities=33% Similarity=0.403 Sum_probs=62.5
Q ss_pred CceeecCcEEEEEecCHHHHhCCCeEEEecCCCCeEEEEcCCCceecCCccc------CCC----CCccEEEEEEEEEee
Q 019908 264 KFKRKFDDLYVDHTLSLTEALCGFQFALTHLDGRQLLIKSNPGEIIKPGIYF------DNF----TSVNLYLHEYCFLWL 333 (334)
Q Consensus 264 ~f~r~g~dL~~~~~I~l~~al~G~~~~i~tldG~~l~v~i~~g~~i~~g~~~------~~~----~~GdL~v~~~V~~p~ 333 (334)
.|+|+|+||+++++|+|.+|++|+++.|+||||+.+.|+||+|+++++|... +|. .+|||||+|+|.||-
T Consensus 1 ~F~R~G~DL~~~~~Isl~eAllG~~i~v~tldG~~~~v~ip~g~v~~~G~~~rl~G~Gmp~~~~~~~GDL~V~~~V~~P~ 80 (121)
T 1xao_A 1 SFKRDGDDLVYEAEIDLLTAIAGGEFALEHVSGDWLKVGIVPGEVIAPGMRKVIEGKGMPIPKYGGYGNLIIKFTIKFPE 80 (121)
T ss_dssp CCEEETTEEEEEEEEEHHHHHHCEEEEEECTTSCEEEEEECTTSCCCTTCEEEETTCSCC------CCCEEEEEEEECCC
T ss_pred CceEECCeEEEEEEcCHHHHhCCCEEEEecCCCCEEEEEeCCCCeeCCCcEEEECCCCCCCCCCCCCCCEEEEEEEECCC
Confidence 4999999999999999999999999999999999899999999888898754 331 589999999999993
No 32
>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1
Probab=99.67 E-value=8e-18 Score=127.87 Aligned_cols=63 Identities=30% Similarity=0.332 Sum_probs=57.0
Q ss_pred CCCCCccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCh-----HHHHHHHHHHhhcCCCcccc
Q 019908 6 PRRSNNTKYYEILGVSKSATEDELKKAYRKAAMKNHPDKGGDP-----EKFKELGQAYEVLSDPEKRD 68 (334)
Q Consensus 6 ~~~~~~~~~y~iLgv~~~a~~~eik~ayr~la~~~hPd~~~~~-----~~f~~i~~Ay~~L~d~~~r~ 68 (334)
+......++|+||||+++|+.+|||+|||+||++||||++++. ++|++|++||++|+|...|.
T Consensus 10 ~~~~~~~~~y~vLgv~~~as~~eIKkaYrkla~~~HPDk~~~~~~~a~~~F~~I~~AYevL~~~~~r~ 77 (88)
T 1iur_A 10 PRGSILKEVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRLEKQAFLD 77 (88)
T ss_dssp CSSSCHHHHHHHHHHTTSSCSHHHHHHHHHHHHHTCTTTSSSCHHHHHHHHHHHHHHHHHHHHHTTCS
T ss_pred CCCccHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHHHHhhcccc
Confidence 4456778999999999999999999999999999999999862 79999999999999887764
No 33
>3hho_A CO-chaperone protein HSCB homolog; structural genomics, IDP01304, center for structural genomics of infectious diseases, CSGI; 2.15A {Vibrio cholerae}
Probab=99.64 E-value=4.3e-17 Score=139.70 Aligned_cols=63 Identities=25% Similarity=0.476 Sum_probs=57.6
Q ss_pred CccccccccCCCCCCC--HHHHHHHHHHHHHHhCCCCCCCh---------HHHHHHHHHHhhcCCCcccchhcc
Q 019908 10 NNTKYYEILGVSKSAT--EDELKKAYRKAAMKNHPDKGGDP---------EKFKELGQAYEVLSDPEKRDIYDQ 72 (334)
Q Consensus 10 ~~~~~y~iLgv~~~a~--~~eik~ayr~la~~~hPd~~~~~---------~~f~~i~~Ay~~L~d~~~r~~YD~ 72 (334)
...|||++|||+++|+ .++||+|||+|+++||||++++. ++|+.|++||++|+||.+|+.||.
T Consensus 2 ~~~d~Y~iLgl~~~a~id~~eIk~aYr~l~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vL~dp~~R~~Yd~ 75 (174)
T 3hho_A 2 NAMNYFELFGLPIQFELDGSLLSSQFRALQKRFHPDNFATASERDRLMAVQQAAQINDAYQTLKDPLRRAEYLL 75 (174)
T ss_dssp --CCHHHHTTCCSSSCCCHHHHHHHHHHHHHHHCGGGSTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHH
T ss_pred CCCCHHHHcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHH
Confidence 4679999999999998 99999999999999999998742 589999999999999999999997
No 34
>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP: a.2.3.1 PDB: 1xi5_J
Probab=99.62 E-value=7.2e-17 Score=138.00 Aligned_cols=62 Identities=27% Similarity=0.497 Sum_probs=57.1
Q ss_pred CCccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCh-------HHHHHHHHHHhhcCCCcccchh
Q 019908 9 SNNTKYYEILGVSKSATEDELKKAYRKAAMKNHPDKGGDP-------EKFKELGQAYEVLSDPEKRDIY 70 (334)
Q Consensus 9 ~~~~~~y~iLgv~~~a~~~eik~ayr~la~~~hPd~~~~~-------~~f~~i~~Ay~~L~d~~~r~~Y 70 (334)
+...+||++|||+++|+.+|||+|||+|+++||||++++. ++|++|++||++|+|+.+|+.|
T Consensus 114 ~~~~d~Y~vLgv~~~As~~eIKkAYRklal~~HPDK~~~~~~e~~A~~~F~~I~eAYevLsD~~kR~~Y 182 (182)
T 1n4c_A 114 WAGETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQGQKPLY 182 (182)
T ss_dssp CTTCCCCCCCCGGGGSSHHHHHHHHHHHHHHTCGGGGSSCTTHHHHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred cCccchhhcCCCCCCCCHHHHHHHHHHHHHHHCcCcCCCcchHHHHHHHHHHHHHHHHHHCCHHhhhhC
Confidence 4447999999999999999999999999999999998642 5999999999999999999987
No 35
>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1
Probab=99.62 E-value=6.8e-17 Score=137.99 Aligned_cols=62 Identities=21% Similarity=0.352 Sum_probs=57.9
Q ss_pred ccccccCCCCCC--CHHHHHHHHHHHHHHhCCCCCCCh---------HHHHHHHHHHhhcCCCcccchhcccC
Q 019908 13 KYYEILGVSKSA--TEDELKKAYRKAAMKNHPDKGGDP---------EKFKELGQAYEVLSDPEKRDIYDQYG 74 (334)
Q Consensus 13 ~~y~iLgv~~~a--~~~eik~ayr~la~~~hPd~~~~~---------~~f~~i~~Ay~~L~d~~~r~~YD~~G 74 (334)
|||++|||+++| +.++||+|||+|+++||||++++. ++|+.|++||++|+||.+|+.||..-
T Consensus 2 d~y~lLgl~~~a~i~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vL~dp~~R~~Yd~~l 74 (171)
T 1fpo_A 2 DYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRHPLMRAEYLLSL 74 (171)
T ss_dssp HHHHHTTCCSSSCCCHHHHHHHHHHHHHHTCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHT
T ss_pred CHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHh
Confidence 799999999999 999999999999999999998752 48999999999999999999999853
No 36
>3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like J-domain containing protein, JAC1, chloroplast accumulation response; 1.80A {Arabidopsis thaliana}
Probab=99.62 E-value=9e-17 Score=126.32 Aligned_cols=57 Identities=18% Similarity=0.283 Sum_probs=51.2
Q ss_pred CCCccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-----------hHHHHHHHHHHhhcCCCc
Q 019908 8 RSNNTKYYEILGVSKSATEDELKKAYRKAAMKNHPDKGGD-----------PEKFKELGQAYEVLSDPE 65 (334)
Q Consensus 8 ~~~~~~~y~iLgv~~~a~~~eik~ayr~la~~~hPd~~~~-----------~~~f~~i~~Ay~~L~d~~ 65 (334)
.+...|||++|+++. |+.+|||+|||++|++||||++++ .++|++|++||++|+|+.
T Consensus 37 l~~~~d~Y~vl~~~~-As~~eIKkAYRklal~~HPDK~~~~~~~~e~~~~A~~~F~~I~~AYevLsd~~ 104 (106)
T 3ag7_A 37 LWSGSGWKPVPLMDM-IEGNAVRKSYQRALLILHPDKLQQKGASANQKYMAEKVFELLQEAWDHFNTLG 104 (106)
T ss_dssp SCTTSCCCCCCGGGS-CSHHHHHHHHHHHHHHHCHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred hcccCCHHHHcCCCC-CCHHHHHHHHHHHHHHHCcCcCCCcccchhhHHHHHHHHHHHHHHHHHHcCcc
Confidence 456689999999996 999999999999999999999752 368999999999999986
No 37
>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}
Probab=99.61 E-value=1.5e-16 Score=139.72 Aligned_cols=63 Identities=21% Similarity=0.380 Sum_probs=57.6
Q ss_pred CccccccccCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCh---------HHHHHHHHHHhhcCCCcccchhcc
Q 019908 10 NNTKYYEILGVSKS--ATEDELKKAYRKAAMKNHPDKGGDP---------EKFKELGQAYEVLSDPEKRDIYDQ 72 (334)
Q Consensus 10 ~~~~~y~iLgv~~~--a~~~eik~ayr~la~~~hPd~~~~~---------~~f~~i~~Ay~~L~d~~~r~~YD~ 72 (334)
...|||++|||+++ ++.++||+|||+|+++||||++++. ++|++|++||++|+||.+|+.||.
T Consensus 41 ~~~d~y~lLgv~~~~~a~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vLsdp~~R~~Yd~ 114 (207)
T 3bvo_A 41 PTRDYFSLMDCNRSFRVDTAKLQHRYQQLQRLVHPDFFSQRSQTEKDFSEKHSTLVNDAYKTLLAPLSRGLYLL 114 (207)
T ss_dssp TTCCHHHHTTSCSCSCCCHHHHHHHHHHHHHHHCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHH
T ss_pred CCCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
Confidence 36799999999986 7899999999999999999998742 579999999999999999999996
No 38
>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}
Probab=99.60 E-value=4.1e-17 Score=169.96 Aligned_cols=74 Identities=41% Similarity=0.785 Sum_probs=40.9
Q ss_pred CCCccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCh----HHHHHHHHHHhhcCCCcccchhcccChhhhhcC
Q 019908 8 RSNNTKYYEILGVSKSATEDELKKAYRKAAMKNHPDKGGDP----EKFKELGQAYEVLSDPEKRDIYDQYGEDALKEG 81 (334)
Q Consensus 8 ~~~~~~~y~iLgv~~~a~~~eik~ayr~la~~~hPd~~~~~----~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~~~ 81 (334)
.....|||++|||+++|+.+|||+|||+||++||||++++. ++|++|++||++|+||.+|+.||+||++++..+
T Consensus 17 ~~~~~~~y~~lg~~~~a~~~~i~~ay~~l~~~~hpd~~~~~~~~~~~f~~i~~ay~~L~~~~~r~~yd~~~~~~~~~~ 94 (780)
T 3apo_A 17 GRHDQNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKYDKYGEKGLEDN 94 (780)
T ss_dssp ------CHHHHTCCTTCCHHHHHHHHCC-----------------------CTHHHHHHSHHHHHHHTTC--------
T ss_pred CCCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHHcChHHHHHHHhhcccccccC
Confidence 45678999999999999999999999999999999999642 799999999999999999999999999887654
No 39
>2qwo_B Putative tyrosine-protein phosphatase auxilin; chaperone-cochaperone complex, ATP-binding, nucleotide-bindi nucleus, phosphorylation, stress response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B* 2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A
Probab=99.60 E-value=1.5e-16 Score=121.23 Aligned_cols=52 Identities=29% Similarity=0.478 Sum_probs=48.1
Q ss_pred cccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCh-------HHHHHHHHHHhhcCC
Q 019908 12 TKYYEILGVSKSATEDELKKAYRKAAMKNHPDKGGDP-------EKFKELGQAYEVLSD 63 (334)
Q Consensus 12 ~~~y~iLgv~~~a~~~eik~ayr~la~~~hPd~~~~~-------~~f~~i~~Ay~~L~d 63 (334)
.++|++|||+++|+.+|||+|||++|++||||+|++. ++|++|++||++|.+
T Consensus 33 ~~~y~~Lgv~~~as~~eIKkAYRklal~~HPDK~~~~~~~~~A~~~F~~i~eAyevL~~ 91 (92)
T 2qwo_B 33 ETKWKPVGMADLVTPEQVKKVYRKAVLVVHPCKATGQPYEQYAKMIFMELNDAWSEFEN 91 (92)
T ss_dssp CCSCCCCCGGGSSSHHHHHHHHHHHHHHTCHHHHTTSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCeecCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchhHhHHHHHHHHHHHHHHHHHh
Confidence 5899999999999999999999999999999998752 589999999999964
No 40
>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1
Probab=99.59 E-value=1e-15 Score=138.41 Aligned_cols=129 Identities=20% Similarity=0.289 Sum_probs=81.8
Q ss_pred eecCcccccccceeeeCCCCCCCCCccC----------CcccCCCCCCCcEEEEEEeeccceeeEEEEeCCCCccceEEE
Q 019908 132 LYNGTTKKLSLSRNILCPKCKGKGSKSG----------ALGKCYGCQGTGMKITTRQIGLGMIQQMQHVCPECRGAGEVI 201 (334)
Q Consensus 132 ~~~G~~~~i~~~~~~~C~~C~G~G~~~~----------~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~ 201 (334)
.|.|....-.. ...|+.|+|+|.... ...+|+.|+|+|+++. ...+|+.|+|.|++.
T Consensus 43 ~C~G~G~~~g~--~~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~G~~i~-----------~~~~C~~C~G~g~~~ 109 (248)
T 1nlt_A 43 ECEGRGGKKGA--VKKCTSCNGQGIKFVTRQMGPMIQRFQTECDVCHGTGDIID-----------PKDRCKSCNGKKVEN 109 (248)
T ss_dssp TTTTCSBSTTT--CCCCTTSSSSSCEEEEEESSSEEEEEECSCTTCSSSSSCCC-----------TTSBCSSSTTSCEEE
T ss_pred CCcCccCCCCC--CccCCCCCCCcEEEEEEecCceEEEEEEcCCCCCCcCEEec-----------cCCCCcccCCCceEe
Confidence 35666655332 378999999997521 2357999999998662 127999999998754
Q ss_pred ccCC-----CCCcc------------------CCCceeEEeE--------------------------------------
Q 019908 202 SERD-----KCPQC------------------KANKVTQEKK-------------------------------------- 220 (334)
Q Consensus 202 ~~~~-----~C~~C------------------~G~g~~~~~~-------------------------------------- 220 (334)
..+. +--.- .|.-++.-..
T Consensus 110 ~~~~l~V~Ip~G~~~G~~ir~~g~G~~~~~g~~GDl~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAllG~~i~v~tldG~ 189 (248)
T 1nlt_A 110 ERKILEVHVEPGMKDGQRIVFKGEADQAPDVIPGDVVFIVSERPHKSFKRDGDDLVYEAEIDLLTAIAGGEFALEHVSGD 189 (248)
T ss_dssp EEEEEEEEECTTCCTTCEEEETTCSCCCTTCBCCCEEEEEEECCCSSCEEETTEEEEEEEEEHHHHHHCBCCEEECSSSC
T ss_pred eeEEEEEEECCCccCCCEEEEeeeecCCCCCCcceEEEEEEEecCccceeeCCEEEEEEEeCHHHHhcCCEEEEeCCCCC
Confidence 2100 00000 0111111111
Q ss_pred EEEEEeccC--ccCCcEEEEecCcCCCCCC-CCcCEEEEEEEEeCCC--ceeecCcEE
Q 019908 221 VLEVHVEKG--MQHGQKIAFEGQADEAPDT-ITGDIVFILQLKEHPK--FKRKFDDLY 273 (334)
Q Consensus 221 ~~~v~Ip~G--~~~G~~i~l~g~G~~~~~~-~~GDL~v~i~v~~~~~--f~r~g~dL~ 273 (334)
.++|+|||| +++|++++|+|+|++.... ..|||||+|+|+.|+. ++.+..+|+
T Consensus 190 ~~~i~ip~g~vt~~g~~~rl~g~Gmp~~~~~~~GDL~V~~~V~~P~~~~Ls~~q~~~l 247 (248)
T 1nlt_A 190 WLKVGIVPGEVIAPGMRKVIEGKGMPIPKYGGYGNLIIKFTIKDPENHFTSEENLKKL 247 (248)
T ss_dssp EEECCBCTTTTCSTTCEEEETTCSCBCSSSCSBCCEEEEEEEECCC------------
T ss_pred EEEEEeCCCCeeCCCeEEEEcCCCCccCCCCCcCCEEEEEEEECCCCCCCCHHHHHhh
Confidence 589999999 9999999999999986433 6799999999998887 777776654
No 41
>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A
Probab=99.58 E-value=2.9e-16 Score=135.06 Aligned_cols=65 Identities=31% Similarity=0.575 Sum_probs=59.4
Q ss_pred CCCcccccccc------CCCC-CCCHHHHHHHHHHHHHHhCCCCCCC-hHHHHHHHHHHhhcCCCcccchhcc
Q 019908 8 RSNNTKYYEIL------GVSK-SATEDELKKAYRKAAMKNHPDKGGD-PEKFKELGQAYEVLSDPEKRDIYDQ 72 (334)
Q Consensus 8 ~~~~~~~y~iL------gv~~-~a~~~eik~ayr~la~~~hPd~~~~-~~~f~~i~~Ay~~L~d~~~r~~YD~ 72 (334)
.+...|||++| |+++ +|+.++||+|||+|+++||||++++ .++|++|++||++|+||.+|+.||.
T Consensus 7 ~~~~~d~y~ll~~~~p~~~~~~~a~~~eIk~aYr~la~~~HPDk~~~a~~~f~~i~~AY~vL~dp~~R~~Yd~ 79 (181)
T 3uo3_A 7 RRFTSTFYELFPKTFPKKLPIWTIDQSRLRKEYRQLQAQHHPDMAQQGSEQSSTLNQAYHTLKDPLRRSQYML 79 (181)
T ss_dssp CCCSCCTGGGCTTTCTTCSCCSCCCHHHHHHHHHHHHHTCCTTSCCSCSSGGGSHHHHHHHHHSHHHHHHHHH
T ss_pred CCCCCCHHHHhccccccCCCCCCCCHHHHHHHHHHHHHHhCcCCCccHHHHHHHHHHHHHHHcChHHHHHHHH
Confidence 45668999999 4665 8999999999999999999999984 5899999999999999999999998
No 42
>1exk_A DNAJ protein; extended beta-hairpin, CXXCXGXG, zinc-binding motif, chaperone; NMR {Escherichia coli} SCOP: g.54.1.1
Probab=99.50 E-value=3.4e-14 Score=105.80 Aligned_cols=77 Identities=31% Similarity=0.778 Sum_probs=65.6
Q ss_pred CcccccccceeeeCCCCCCCCCccCCc-ccCCCCCCCcEEEEEEeeccceeeEEEEeCCCCccceEEEccCCCCCccCCC
Q 019908 135 GTTKKLSLSRNILCPKCKGKGSKSGAL-GKCYGCQGTGMKITTRQIGLGMIQQMQHVCPECRGAGEVISERDKCPQCKAN 213 (334)
Q Consensus 135 G~~~~i~~~~~~~C~~C~G~G~~~~~~-~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~ 213 (334)
|.+++|.+++.+.|+.|+|+|...... .+|+.|+|+|+++..+ |+++ ++.+|+.|+|+|+++. ++|+.|+|.
T Consensus 1 G~~~~i~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~----g~~~-~~~~C~~C~G~G~~~~--~~C~~C~G~ 73 (79)
T 1exk_A 1 GVTKEIRIPTLEECDVCHGSGAKPGTQPQTCPTCHGSGQVQMRQ----GFFA-VQQTCPHCQGRGTLIK--DPCNKCHGH 73 (79)
T ss_dssp CTTTSCCCCCEEECGGGTTTSBCSSSCCEECTTTTTSSEEEEEE----TTEE-EEEECTTTTTSSEECS--SBCGGGTTS
T ss_pred CcEEEEEcccceECCCCcccccCCCccCCCCCCCcCeEEEEEEc----CCCE-EeeECcCCCCccEECC--CcCCCCCCe
Confidence 677889999999999999999877654 6899999999887633 5554 5689999999999875 899999999
Q ss_pred ceeEE
Q 019908 214 KVTQE 218 (334)
Q Consensus 214 g~~~~ 218 (334)
|++.+
T Consensus 74 G~~~~ 78 (79)
T 1exk_A 74 GRVER 78 (79)
T ss_dssp SEEEC
T ss_pred EEEee
Confidence 99864
No 43
>3i38_A Putative chaperone DNAJ; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.30A {Klebsiella pneumoniae subsp}
Probab=99.14 E-value=1.2e-11 Score=97.62 Aligned_cols=53 Identities=23% Similarity=0.374 Sum_probs=46.0
Q ss_pred EEEEeccCccCCcEEEEecCcCCCCCCCCcCEEEEEEEEeCCCceeecCcEEEE
Q 019908 222 LEVHVEKGMQHGQKIAFEGQADEAPDTITGDIVFILQLKEHPKFKRKFDDLYVD 275 (334)
Q Consensus 222 ~~v~Ip~G~~~G~~i~l~g~G~~~~~~~~GDL~v~i~v~~~~~f~r~g~dL~~~ 275 (334)
++|+||+|+++|++++|+|+|++..+ .+|||||+|+|..|+.++.++.+++.+
T Consensus 40 ~~v~ip~g~~~G~~~rl~G~G~p~~~-~~GDL~v~~~V~~P~~Ls~~q~~~l~~ 92 (109)
T 3i38_A 40 ILLTVPPGSQAGQRLRIKGKGLVSKT-HTGDLFAVIKIVMPTKPDEKARELWQQ 92 (109)
T ss_dssp EEEEECTTCCTTCEEEETTCSCBCSS-CBCCEEEEEEECCCSSCCHHHHHHHHH
T ss_pred EEEeeCCCcCcCeEEEECCccCCCCC-CCcCEEEEEEEECCCCCCHHHHHHHHH
Confidence 78999999999999999999999754 789999999999998887776665543
No 44
>2guz_B Mitochondrial import inner membrane translocase subunit TIM16; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=99.13 E-value=2.8e-11 Score=86.00 Aligned_cols=52 Identities=21% Similarity=0.218 Sum_probs=48.9
Q ss_pred ccccccccCCCCC---CCHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHhhcC
Q 019908 11 NTKYYEILGVSKS---ATEDELKKAYRKAAMKNHPDKGGDPEKFKELGQAYEVLS 62 (334)
Q Consensus 11 ~~~~y~iLgv~~~---a~~~eik~ayr~la~~~hPd~~~~~~~f~~i~~Ay~~L~ 62 (334)
..+.|.||||+++ ++.++|++|||+|...+|||+.+++....+|++|++.|.
T Consensus 3 ~~EA~~ILgv~~~~~~a~~~~Ik~~yr~Lm~~nhPDkGGS~yl~~ki~~Ake~l~ 57 (65)
T 2guz_B 3 LDESCKILNIEESKGDLNMDKINNRFNYLFEVNDKEKGGSFYLQSKVYRAAERLK 57 (65)
T ss_dssp HHHHHHHTTCCGGGTCCSHHHHHHHHHHHHHHTCGGGTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCcCcCCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHH
Confidence 4568999999999 999999999999999999999999999999999999985
No 45
>1xao_A YDJ1, mitochondrial protein import protein MAS5; beta sheets, chaperone; 2.07A {Saccharomyces cerevisiae}
Probab=99.01 E-value=1.2e-10 Score=93.58 Aligned_cols=54 Identities=17% Similarity=0.210 Sum_probs=43.0
Q ss_pred EEEEEeccC--ccCCcEEEEecCcCCCCCC-CCcCEEEEEEEEeCCC--ceeecCcEEE
Q 019908 221 VLEVHVEKG--MQHGQKIAFEGQADEAPDT-ITGDIVFILQLKEHPK--FKRKFDDLYV 274 (334)
Q Consensus 221 ~~~v~Ip~G--~~~G~~i~l~g~G~~~~~~-~~GDL~v~i~v~~~~~--f~r~g~dL~~ 274 (334)
.++|+||+| +++|++++|+|+|++..++ ..|||||+|+|+.|.. ++.++.+++.
T Consensus 35 ~~~v~ip~g~v~~~G~~~rl~G~Gmp~~~~~~~GDL~V~~~V~~P~~~~ls~~q~~~l~ 93 (121)
T 1xao_A 35 WLKVGIVPGEVIAPGMRKVIEGKGMPIPKYGGYGNLIIKFTIKFPENHFTSEENLKKLE 93 (121)
T ss_dssp EEEEEECTTSCCCTTCEEEETTCSCC------CCCEEEEEEEECCCTTCSCHHHHHHHH
T ss_pred EEEEEeCCCCeeCCCcEEEECCCCCCCCCCCCCCCEEEEEEEECCCCCCCCHHHHHHHH
Confidence 478999999 9999999999999996433 6899999999998887 7776665543
No 46
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=98.94 E-value=4.8e-10 Score=106.82 Aligned_cols=62 Identities=47% Similarity=0.770 Sum_probs=53.6
Q ss_pred ccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCh-------HHHHHHHHHHhhcCCCcccchhcc
Q 019908 11 NTKYYEILGVSKSATEDELKKAYRKAAMKNHPDKGGDP-------EKFKELGQAYEVLSDPEKRDIYDQ 72 (334)
Q Consensus 11 ~~~~y~iLgv~~~a~~~eik~ayr~la~~~hPd~~~~~-------~~f~~i~~Ay~~L~d~~~r~~YD~ 72 (334)
..++|++||+.+.++.++|+++|+++++++|||+.+++ ++|++|++||++|+|+++|+.||+
T Consensus 381 ~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r~~yd~ 449 (450)
T 2y4t_A 381 KRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMRKKFDD 449 (450)
T ss_dssp SCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC-----
T ss_pred chhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHHHhccC
Confidence 45899999999999999999999999999999998864 589999999999999999999997
No 47
>3agx_A DNAJ homolog subfamily B member 1; chaperone; 1.85A {Homo sapiens} PDB: 3agy_A 3agz_A 2qld_A
Probab=98.74 E-value=4e-09 Score=90.58 Aligned_cols=52 Identities=12% Similarity=0.231 Sum_probs=43.9
Q ss_pred EEEEEeccCccCCcEEEEecCcCCCCC--CCCcCEEEEEEEEeCCCceeecCcE
Q 019908 221 VLEVHVEKGMQHGQKIAFEGQADEAPD--TITGDIVFILQLKEHPKFKRKFDDL 272 (334)
Q Consensus 221 ~~~v~Ip~G~~~G~~i~l~g~G~~~~~--~~~GDL~v~i~v~~~~~f~r~g~dL 272 (334)
.++|+||+|+++|++++|+|+|++..+ +..|||||+|+|..|..++.+..+|
T Consensus 121 ~~~i~i~~~t~~g~~~rl~g~Gmp~~~~~~~~GDL~V~~~V~~P~~ls~~q~~~ 174 (181)
T 3agx_A 121 TIPVVFKDVIRPGMRRKVPGEGLPLPKTPEKRGDLIIEFEVIFPERIPQTSRTV 174 (181)
T ss_dssp EEEEEECSCCCTTCEEEETTCSCBCSSSTTSBCCEEEEEEEECCSCCCHHHHHH
T ss_pred EEEEECCCccCCCcEEEECCcCCCcCCCCCCcCCEEEEEEEECCCCCCHHHHHH
Confidence 478889999999999999999999643 4579999999999888777665544
No 48
>2q2g_A HSP40 protein, heat shock 40 kDa protein, putative (fragment); malaria, structural genomics, structural genomics consortium, SGC; 1.90A {Cryptosporidium parvum iowa II}
Probab=98.70 E-value=6.2e-09 Score=89.34 Aligned_cols=52 Identities=8% Similarity=0.141 Sum_probs=43.7
Q ss_pred EEEEEeccCccCCcEEEEecCcCCCCC--CCCcCEEEEEEEEeCCCceeecCcE
Q 019908 221 VLEVHVEKGMQHGQKIAFEGQADEAPD--TITGDIVFILQLKEHPKFKRKFDDL 272 (334)
Q Consensus 221 ~~~v~Ip~G~~~G~~i~l~g~G~~~~~--~~~GDL~v~i~v~~~~~f~r~g~dL 272 (334)
.++|+||+|+++|++++|+|+|++..+ +..|||||+|+|..|..++.+..+|
T Consensus 121 ~v~i~ip~~t~~g~~~rl~g~Gmp~~~~~~~~GDL~V~~~V~~P~~Ls~~q~~~ 174 (180)
T 2q2g_A 121 NLQIPIKEIVNPKTRKIVPNEGMPIKNQPGQKGDLILEFDICFPKSLTPEQKKL 174 (180)
T ss_dssp EEEEEECSCCCTTCEEEETTCSCBCSSSTTCBCCEEEEEEEECCSCCCHHHHHH
T ss_pred EEEEECCCccCCCEEEEECCcCCCcCCCCCCcCCEEEEEEEECCCCCCHHHHHH
Confidence 478889999999999999999998642 4579999999999888777665444
No 49
>1c3g_A Heat shock protein 40; beta sheets, short helices, chaperone; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 PDB: 2b26_A
Probab=98.67 E-value=4.1e-09 Score=89.62 Aligned_cols=51 Identities=14% Similarity=0.232 Sum_probs=42.8
Q ss_pred EEEEEeccCccCCcEEEEecCcCCCCC--CCCcCEEEEEEEEeCCCceeecCc
Q 019908 221 VLEVHVEKGMQHGQKIAFEGQADEAPD--TITGDIVFILQLKEHPKFKRKFDD 271 (334)
Q Consensus 221 ~~~v~Ip~G~~~G~~i~l~g~G~~~~~--~~~GDL~v~i~v~~~~~f~r~g~d 271 (334)
.++|+||+|+++|++++|+|+|++..+ +..|||||+|+|..|+.++.++.+
T Consensus 115 ~~~i~i~~~t~~g~~~rl~g~G~p~~~~~~~~GDL~V~~~V~~P~~Ls~~q~~ 167 (170)
T 1c3g_A 115 TLPLSRVQPVQPSQTSTYPGQGMPTPKNPSQRGNLIVKYKVDYPISLNDAQKR 167 (170)
T ss_dssp EEEEEESSCCCTTCEEECTTCSCBCSSCTTSBCCEEEEECCBCCSSCCTTHHH
T ss_pred EEEEECCCccCCCcEEEEeCCCCCcCCCCCCCCCEEEEEEEECCCCCCHHHHH
Confidence 478889999999999999999998643 357999999999988877665543
No 50
>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A
Probab=98.59 E-value=1.2e-08 Score=95.48 Aligned_cols=53 Identities=25% Similarity=0.390 Sum_probs=45.7
Q ss_pred EEEEeccCccCCcEEEEecCcCCCCCCCCcCEEEEEEEEeCCCceeecCcEEEE
Q 019908 222 LEVHVEKGMQHGQKIAFEGQADEAPDTITGDIVFILQLKEHPKFKRKFDDLYVD 275 (334)
Q Consensus 222 ~~v~Ip~G~~~G~~i~l~g~G~~~~~~~~GDL~v~i~v~~~~~f~r~g~dL~~~ 275 (334)
++|+||+|+++|++++|+|+|++.. +..|||||+|+|.-|+.+..+...|+.+
T Consensus 260 v~l~ip~gt~~g~~~rl~G~GmP~~-~~rGDL~v~~~V~~P~~l~~~q~~~l~~ 312 (329)
T 3lz8_A 260 ILLTVPPGSQAGQRLRIKGKGLVSK-THTGDLFAVIKIVMPTKPDEKARELWQQ 312 (329)
T ss_dssp EEEEECTTCCTTCEEEETTCSCBCS-SCBCCEEEEEEECCCSSCCHHHHHHHHH
T ss_pred EEEEECCCCCCCCEEEEcCCCCCCC-CCCCCEEEEEEEECCCCCCHHHHHHHHH
Confidence 6899999999999999999999965 5689999999999988887766665543
No 51
>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.18 E-value=4.2e-07 Score=70.74 Aligned_cols=58 Identities=29% Similarity=0.584 Sum_probs=42.6
Q ss_pred eeecCcccccccceeeeCCCCCCCCCccC------CcccCCCCCCCcEEEEEEeeccceeeEEEEeCCCCccceEEEc
Q 019908 131 DLYNGTTKKLSLSRNILCPKCKGKGSKSG------ALGKCYGCQGTGMKITTRQIGLGMIQQMQHVCPECRGAGEVIS 202 (334)
Q Consensus 131 e~~~G~~~~i~~~~~~~C~~C~G~G~~~~------~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~ 202 (334)
+.+.|.... .-.....|+.|+|+|.... ...+|+.|+|+|+++. .+|+.|+|.|++..
T Consensus 32 ~~C~G~G~~-~g~~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~i~-------------~~C~~C~G~G~v~~ 95 (104)
T 2ctt_A 32 ERCNGKGNE-PGTKVQHCHYCGGSGMETINTGPFVMRSTCRRCGGRGSIII-------------SPCVVCRGAGQAKQ 95 (104)
T ss_dssp SSSSSSSSC-TTCCCEECSSSSSSCEEEEEETTEEEEEECSSSSSSSEECS-------------SCCSSSSSCSEECC
T ss_pred CCCcCCccC-CCCCCccCCCCCCCEEEEEEeCCEEEEEECCcCCCcceECC-------------CcCCCCCCeeEEEE
Confidence 445565543 2234578999999996531 2357999999998764 79999999998764
No 52
>1exk_A DNAJ protein; extended beta-hairpin, CXXCXGXG, zinc-binding motif, chaperone; NMR {Escherichia coli} SCOP: g.54.1.1
Probab=98.08 E-value=7.6e-07 Score=65.60 Aligned_cols=57 Identities=33% Similarity=0.703 Sum_probs=42.0
Q ss_pred eeecCcccccccceeeeCCCCCCCCCccCC------cccCCCCCCCcEEEEEEeeccceeeEEEEeCCCCccceEEE
Q 019908 131 DLYNGTTKKLSLSRNILCPKCKGKGSKSGA------LGKCYGCQGTGMKITTRQIGLGMIQQMQHVCPECRGAGEVI 201 (334)
Q Consensus 131 e~~~G~~~~i~~~~~~~C~~C~G~G~~~~~------~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~ 201 (334)
+.+.|.... ......+|+.|+|+|..... ..+|+.|+|+|.++. .+|+.|+|.|++.
T Consensus 15 ~~C~G~G~~-~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~-------------~~C~~C~G~G~~~ 77 (79)
T 1exk_A 15 DVCHGSGAK-PGTQPQTCPTCHGSGQVQMRQGFFAVQQTCPHCQGRGTLIK-------------DPCNKCHGHGRVE 77 (79)
T ss_dssp GGGTTTSBC-SSSCCEECTTTTTSSEEEEEETTEEEEEECTTTTTSSEECS-------------SBCGGGTTSSEEE
T ss_pred CCCcccccC-CCccCCCCCCCcCeEEEEEEcCCCEEeeECcCCCCccEECC-------------CcCCCCCCeEEEe
Confidence 345565543 23345689999999976421 257999999998653 7999999999875
No 53
>3lcz_A YCZA, inhibitor of trap, regulated by T-box (Trp) seque; anti-trap, tryptophan RNA-binding attenuation PROT transcription attenuation; 2.06A {Bacillus licheniformis} PDB: 3ld0_A
Probab=97.79 E-value=5.1e-06 Score=56.16 Aligned_cols=32 Identities=28% Similarity=0.837 Sum_probs=23.5
Q ss_pred EEEEeCCCCccceEEEccCCCCCccCCCceeEEe
Q 019908 186 QMQHVCPECRGAGEVISERDKCPQCKANKVTQEK 219 (334)
Q Consensus 186 ~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~~ 219 (334)
+++.+|+.|+|+|.++. ++|+.|+|.|++.+.
T Consensus 7 q~~~~C~~C~GsG~~i~--~~C~~C~G~G~v~~~ 38 (53)
T 3lcz_A 7 DLETTCPNCNGSGREEP--EPCPKCLGKGVILTA 38 (53)
T ss_dssp HHEEECTTTTTSCEETT--EECTTTTTSSEEECH
T ss_pred ceeccCcCCcccccCCC--CcCCCCCCcEEEEEE
Confidence 34577888888887775 788888888877653
No 54
>3lcz_A YCZA, inhibitor of trap, regulated by T-box (Trp) seque; anti-trap, tryptophan RNA-binding attenuation PROT transcription attenuation; 2.06A {Bacillus licheniformis} PDB: 3ld0_A
Probab=97.35 E-value=6.1e-05 Score=50.82 Aligned_cols=25 Identities=36% Similarity=0.985 Sum_probs=12.7
Q ss_pred eeCCCCCCCCCccCCcccCCCCCCCcE
Q 019908 146 ILCPKCKGKGSKSGALGKCYGCQGTGM 172 (334)
Q Consensus 146 ~~C~~C~G~G~~~~~~~~C~~C~G~G~ 172 (334)
.+|+.|+|+|.... .+|+.|+|+|.
T Consensus 10 ~~C~~C~GsG~~i~--~~C~~C~G~G~ 34 (53)
T 3lcz_A 10 TTCPNCNGSGREEP--EPCPKCLGKGV 34 (53)
T ss_dssp EECTTTTTSCEETT--EECTTTTTSSE
T ss_pred ccCcCCcccccCCC--CcCCCCCCcEE
Confidence 45666666555432 34555555554
No 55
>2bx9_A Anti-trap, AT, tryptophan RNA-binding attenuator protein-inhibit protein; transcription regulation; 2.80A {Bacillus subtilis} PDB: 2ko8_A* 2zp8_E* 2zp9_C*
Probab=97.25 E-value=9.3e-05 Score=49.94 Aligned_cols=27 Identities=37% Similarity=1.005 Sum_probs=15.7
Q ss_pred eeCCCCCCCCCccCCcccCCCCCCCcEEE
Q 019908 146 ILCPKCKGKGSKSGALGKCYGCQGTGMKI 174 (334)
Q Consensus 146 ~~C~~C~G~G~~~~~~~~C~~C~G~G~~~ 174 (334)
..|+.|+|+|.... .+|+.|+|+|.++
T Consensus 10 ~~C~~C~GsG~~~~--~~C~~C~G~G~v~ 36 (53)
T 2bx9_A 10 VACPKCERAGEIEG--TPCPACSGKGVIL 36 (53)
T ss_dssp EECTTTTTSSEETT--EECTTTTTSSEEE
T ss_pred ccCCCCcceeccCC--CCCccCCCCccEE
Confidence 45666666666532 3566666666544
No 56
>2bx9_A Anti-trap, AT, tryptophan RNA-binding attenuator protein-inhibit protein; transcription regulation; 2.80A {Bacillus subtilis} PDB: 2ko8_A* 2zp8_E* 2zp9_C*
Probab=96.93 E-value=0.00041 Score=46.75 Aligned_cols=27 Identities=30% Similarity=0.743 Sum_probs=15.6
Q ss_pred ccCCCCCCCcEEEEEEeeccceeeEEEEeCCCCccceEEE
Q 019908 162 GKCYGCQGTGMKITTRQIGLGMIQQMQHVCPECRGAGEVI 201 (334)
Q Consensus 162 ~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~ 201 (334)
.+|+.|+|+|.++. .+|+.|+|.|+++
T Consensus 10 ~~C~~C~GsG~~~~-------------~~C~~C~G~G~v~ 36 (53)
T 2bx9_A 10 VACPKCERAGEIEG-------------TPCPACSGKGVIL 36 (53)
T ss_dssp EECTTTTTSSEETT-------------EECTTTTTSSEEE
T ss_pred ccCCCCcceeccCC-------------CCCccCCCCccEE
Confidence 35666666665431 4566666666554
No 57
>3pmq_A Decaheme cytochrome C MTRF; greek KEY, C type cytochrome, outer membrane, electron trans; HET: HEC; 3.20A {Shewanella oneidensis}
Probab=96.76 E-value=0.00021 Score=72.19 Aligned_cols=50 Identities=14% Similarity=0.245 Sum_probs=45.0
Q ss_pred EEeeeeceeeeecCcccccccceeeeCCCCCCCCCccCC----cccCCCCCCCc
Q 019908 122 VHTLKVSLEDLYNGTTKKLSLSRNILCPKCKGKGSKSGA----LGKCYGCQGTG 171 (334)
Q Consensus 122 ~~~l~~sl~e~~~G~~~~i~~~~~~~C~~C~G~G~~~~~----~~~C~~C~G~G 171 (334)
.+.++++|+|+..|..+++.+.+...|..|+|+|...+. ..+|+.|+|+.
T Consensus 168 ~~~l~i~feeA~~G~~k~i~v~~~~~C~tCHGsGA~~Gt~~~~~~tC~tCHGs~ 221 (669)
T 3pmq_A 168 ITNQHYDWQSSGNMLAYTRNLVSIDTCNSCHSNLAFHGGRYNQVETCVTCHNSK 221 (669)
T ss_dssp SCCCEEEEECSSSSCCCCCCCCCSHHHHHHHSSCCTTTTTSCSSSCSTTTSSTT
T ss_pred eEEEEEEhHHhhCCCceEEEeccCCcCCCCCCCCCcCCccCcCCccCCCCCCCc
Confidence 357889999999999999999999999999999998875 46899999994
No 58
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=91.19 E-value=0.12 Score=52.44 Aligned_cols=48 Identities=17% Similarity=0.180 Sum_probs=38.6
Q ss_pred CccccccccCCCCCCCH--HHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHhhc
Q 019908 10 NNTKYYEILGVSKSATE--DELKKAYRKAAMKNHPDKGGDPEKFKELGQAYEVL 61 (334)
Q Consensus 10 ~~~~~y~iLgv~~~a~~--~eik~ayr~la~~~hPd~~~~~~~f~~i~~Ay~~L 61 (334)
...+||++||++.++.. .+|++|||++|+..+++ .+++..+..|+.|=
T Consensus 627 ~~~~~~~~lG~~~~~~~lr~~~~~ayr~la~~~~~~----~~r~~lvd~a~~vr 676 (681)
T 2pzi_A 627 NKASTNHILGFPFTSHGLRLGVEASLRSLARVAPTQ----RHRYTLVDMANKVR 676 (681)
T ss_dssp CCCSSSEETTEESSHHHHHHHHHHHHHHHHHHCSSH----HHHHHHHHHHHHHC
T ss_pred cCCCCcccCCCCCChHHHHHHHHHHHHHHHHhCCCh----HHHHHHHHHhcccC
Confidence 45569999999777765 77999999999975554 37899999998873
No 59
>1ltl_A DNA replication initiator (CDC21/CDC54); HET: DNA; 3.00A {Methanothermobacterthermautotrophicus} SCOP: b.40.4.11
Probab=59.88 E-value=24 Score=31.34 Aligned_cols=63 Identities=24% Similarity=0.321 Sum_probs=30.1
Q ss_pred EeCCCCccceEEEccCCCCCccCCCceeEEeEEEEEEe-----ccCccCCcEEEEecCcCCCCCCCCcCEEEEEEEE
Q 019908 189 HVCPECRGAGEVISERDKCPQCKANKVTQEKKVLEVHV-----EKGMQHGQKIAFEGQADEAPDTITGDIVFILQLK 260 (334)
Q Consensus 189 ~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~~~~~~v~I-----p~G~~~G~~i~l~g~G~~~~~~~~GDL~v~i~v~ 260 (334)
..|+.|.++|..+. ...| .-...++++|+= |+|--|-+ +.+-=.++-.....|||-+.+.=+-
T Consensus 157 ~~Cp~C~~~~f~l~-~~~s-------~f~D~Q~ikiQE~pe~vp~G~~Prs-i~V~l~~dLvd~~~PGDrV~vtGI~ 224 (279)
T 1ltl_A 157 SLCSECGGRSFRLL-QDES-------EFLDTQTLKLQEPLENLSGGEQPRQ-ITVVLEDDLVDTLTPGDIVRVTGTL 224 (279)
T ss_dssp SCCTTTCCCCEEEC-GGGC-------EEEEEEEEEEECCSTTCCSSCCCCE-EEEEEEGGGTTCCCTTCEEEEEEEE
T ss_pred CcCCCCCCCCcEEe-cccc-------EEEeeEEEEEecCcccCCCCCCCeE-EEEEEcccccCccCCCCEEEEEEEE
Confidence 56777777764433 1111 223445666653 33433322 2222233333345678887655443
No 60
>2qkd_A Zinc finger protein ZPR1; helical hairpins, beta helix, anti-parrallel beta sheet, double straded anti-parallel beta helix, metal binding protein; 2.00A {Mus musculus}
Probab=51.09 E-value=13 Score=35.06 Aligned_cols=78 Identities=18% Similarity=0.205 Sum_probs=40.4
Q ss_pred ccCCCCCCCcEEEEEEeecc--ceeeEEEEeCCCCccceEEEccCCCCCccCCCceeEEeE-------------------
Q 019908 162 GKCYGCQGTGMKITTRQIGL--GMIQQMQHVCPECRGAGEVISERDKCPQCKANKVTQEKK------------------- 220 (334)
Q Consensus 162 ~~C~~C~G~G~~~~~~~~~~--g~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~~~------------------- 220 (334)
..|+.|+..|........-| +=+.-+...|+.|+=+-..+.....- .-+|..+.-...
T Consensus 13 s~Cp~C~~~g~t~~~~~~IP~F~eVii~Sf~C~~CGyrn~ev~~~g~~-~pkG~r~tL~V~~~~DLnr~VvKS~tati~I 91 (404)
T 2qkd_A 13 SLCMNCYRNGTTRLLLTKIPFFREIIVSSFSCEHCGWNNTEIQSAGRI-QDQGVRYTLTVRSQEDMNREVVKTDSATTRI 91 (404)
T ss_dssp EECTTTSSEEEEEEEEEEETTTEEEEEEEEECTTTCCEEEEEEEEESS-CSSEEEEEEEECSHHHHTCEEEECTTCEEEE
T ss_pred ccCCCCCCCceEEEEEEcCCCCceEEEEEEECCCCCCchheeeECccc-CCCcEEEEEEECChhcccceEEEcCCcEEEe
Confidence 45888887776543322222 33334567899998653322200000 001111111111
Q ss_pred -EEEEEeccCccCCcEEEEec
Q 019908 221 -VLEVHVEKGMQHGQKIAFEG 240 (334)
Q Consensus 221 -~~~v~Ip~G~~~G~~i~l~g 240 (334)
.+.+.||||+..|..-.+.|
T Consensus 92 PEL~~eI~pg~~~G~iTTVEG 112 (404)
T 2qkd_A 92 PELDFEIPAFSQKGALTTVEG 112 (404)
T ss_dssp GGGTEEECTTSSCCEEEEHHH
T ss_pred eeeeEEecCccCCceEEeHHH
Confidence 45688899998888877765
No 61
>2qkd_A Zinc finger protein ZPR1; helical hairpins, beta helix, anti-parrallel beta sheet, double straded anti-parallel beta helix, metal binding protein; 2.00A {Mus musculus}
Probab=49.87 E-value=16 Score=34.43 Aligned_cols=19 Identities=26% Similarity=0.419 Sum_probs=12.0
Q ss_pred EEEEeccCccCCcEEEEec
Q 019908 222 LEVHVEKGMQHGQKIAFEG 240 (334)
Q Consensus 222 ~~v~Ip~G~~~G~~i~l~g 240 (334)
+.+.||||+..|..-++.|
T Consensus 302 L~lei~pg~~~G~~TTVEG 320 (404)
T 2qkd_A 302 LEFELGMAVLGGKFTTLEG 320 (404)
T ss_dssp GTEEECTTTTCSEEEEHHH
T ss_pred eeEEecCCCCCceEEeHHH
Confidence 4466777776666666654
No 62
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=36.85 E-value=23 Score=23.85 Aligned_cols=47 Identities=23% Similarity=0.414 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHhCCCCCCC-hHHHHHH---HHHHhhcCC-C-cccchhccc
Q 019908 27 DELKKAYRKAAMKNHPDKGGD-PEKFKEL---GQAYEVLSD-P-EKRDIYDQY 73 (334)
Q Consensus 27 ~eik~ayr~la~~~hPd~~~~-~~~f~~i---~~Ay~~L~d-~-~~r~~YD~~ 73 (334)
+|..+||.+|.+...-|.+=+ ....+.| ..-|-+|.| | +++++|+.|
T Consensus 3 eEae~aF~~lL~~~~V~s~wsweqamr~i~i~DPrY~al~d~~~eRK~~Fe~Y 55 (59)
T 2b7e_A 3 MEAEKEFITMLKENQVDSTWSFSRIISELGTRDPRYWMVDDDPLWKKEMFEKY 55 (59)
T ss_dssp THHHHHHHHHHHHTTCCSSCCHHHHHHHHHHHCTHHHHSCCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCCCCCcHHHHHHHhccCCCccccccCCHHHHHHHHHHH
Confidence 578899999998876665433 2556666 356899997 5 466777766
No 63
>1uzc_A Hypothetical protein FLJ21157; nuclear protein, structure, transcription, phosphopeptide recognition, RNA polymerase II carboxyl- terminal domain; NMR {Homo sapiens} SCOP: a.159.2.1 PDB: 2kzg_A 2lks_A 2l9v_A
Probab=35.20 E-value=51 Score=22.87 Aligned_cols=51 Identities=22% Similarity=0.363 Sum_probs=29.3
Q ss_pred CCCHHHHHHHHHHHHHHhCCCCCCChHH-HHHHH--HHHhhcCCC-cccchhccc
Q 019908 23 SATEDELKKAYRKAAMKNHPDKGGDPEK-FKELG--QAYEVLSDP-EKRDIYDQY 73 (334)
Q Consensus 23 ~a~~~eik~ayr~la~~~hPd~~~~~~~-f~~i~--~Ay~~L~d~-~~r~~YD~~ 73 (334)
-++.+|.+++|++|...++-+..-.=+. ...|. .-|.+|.++ ++++.|+.|
T Consensus 11 ~~t~eea~~~F~~LL~e~~V~~~~tWe~~~~~i~~DpRY~al~~~~eRk~~F~ey 65 (71)
T 1uzc_A 11 WNTKEEAKQAFKELLKEKRVPSNASWEQAMKMIINDPRYSALAKLSEKKQAFNAY 65 (71)
T ss_dssp CCSHHHHHHHHHHHHHHTTCCTTCCHHHHHHHHHTSGGGGGCSSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHcCcCCCCCHHHHHHHHccCccccccCCHHHHHHHHHHH
Confidence 5689999999999999886443322122 22221 225555542 444455544
No 64
>1ny9_A Transcriptional activator TIPA-S; all alpha, globin like; NMR {Streptomyces lividans} SCOP: a.181.1.1
Probab=34.05 E-value=47 Score=26.00 Aligned_cols=53 Identities=23% Similarity=0.207 Sum_probs=35.7
Q ss_pred CCCCCCCH-HHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHhhcCCCcccchhcccCh
Q 019908 19 GVSKSATE-DELKKAYRKAAMKNHPDKGGDPEKFKELGQAYEVLSDPEKRDIYDQYGE 75 (334)
Q Consensus 19 gv~~~a~~-~eik~ayr~la~~~hPd~~~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~ 75 (334)
|++|+... .++-+.++.+...+.++. +++.|..|.+-|. .||.-++.||++|.
T Consensus 71 g~~p~s~eaq~l~~~h~~~l~~~~~~~--s~e~~~~L~~mYv--~D~rF~~~~d~~~~ 124 (143)
T 1ny9_A 71 GEPADSEGAMDAAEDHRQGIARNHYDC--GYEMHTCLGEMYV--SDERFTRNIDAAKP 124 (143)
T ss_dssp TCCTTCHHHHHHHHHHHHHHHHHSSCC--CHHHHHHHHHHTT--STHHHHHHHGGGST
T ss_pred CCCCCCHHHHHHHHHHHHHHHHhCCCC--CHHHHHHHHHHHh--cCHHHHHhHcccCh
Confidence 55555543 446666776654544443 5688888888876 68888899999864
No 65
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=30.06 E-value=18 Score=27.74 Aligned_cols=30 Identities=13% Similarity=0.273 Sum_probs=18.4
Q ss_pred eeeeCCCCCCCCCccCCcc-cCCCCCCCcEE
Q 019908 144 RNILCPKCKGKGSKSGALG-KCYGCQGTGMK 173 (334)
Q Consensus 144 ~~~~C~~C~G~G~~~~~~~-~C~~C~G~G~~ 173 (334)
-...|..|.-.-....... .||.|++.-..
T Consensus 72 ~~~~C~~CG~~~e~~~~~~~~CP~Cgs~~~~ 102 (119)
T 2kdx_A 72 VELECKDCSHVFKPNALDYGVCEKCHSKNVI 102 (119)
T ss_dssp CEEECSSSSCEECSCCSTTCCCSSSSSCCCE
T ss_pred ceEEcCCCCCEEeCCCCCCCcCccccCCCcE
Confidence 3566888865544333445 68888777543
No 66
>2bx2_L Ribonuclease E, RNAse E; RNA-binding, RNA turnover, RNA processing, hydrolase, endonu nuclease; 2.85A {Escherichia coli} PDB: 2c0b_L 2c4r_L 2vmk_A 2vrt_A 1slj_A 1smx_A 1sn8_A
Probab=29.86 E-value=8.2 Score=37.74 Aligned_cols=24 Identities=33% Similarity=0.787 Sum_probs=13.8
Q ss_pred eccceeeEEEEeCCCCccceEEEc
Q 019908 179 IGLGMIQQMQHVCPECRGAGEVIS 202 (334)
Q Consensus 179 ~~~g~~~~~~~~C~~C~G~G~~~~ 202 (334)
..+.+...+..+||.|.|+|.+.+
T Consensus 399 ~r~sL~e~~~~~Cp~C~G~G~v~s 422 (517)
T 2bx2_L 399 LSPSLGESSHHVCPRCSGTGTVRD 422 (517)
T ss_dssp CSCCHHHHHCCCCSSSSSSSCCCC
T ss_pred cCcChhhhhcCcCCCcCCceeECC
Confidence 334443334467777777776543
No 67
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=29.34 E-value=13 Score=29.67 Aligned_cols=13 Identities=15% Similarity=0.337 Sum_probs=7.9
Q ss_pred eeeeCCCCCCCCC
Q 019908 144 RNILCPKCKGKGS 156 (334)
Q Consensus 144 ~~~~C~~C~G~G~ 156 (334)
-...|..|.-...
T Consensus 69 ~~~~C~~CG~~~~ 81 (139)
T 3a43_A 69 AVFKCRNCNYEWK 81 (139)
T ss_dssp CEEEETTTCCEEE
T ss_pred CcEECCCCCCEEe
Confidence 3456888865543
No 68
>1ckt_A High mobility group 1 protein; high-mobility group domain, BENT DNA, protein-drug-DNA compl regulation-DNA complex; HET: DNA 5IU; 2.50A {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1j3x_A
Probab=28.20 E-value=92 Score=20.78 Aligned_cols=40 Identities=28% Similarity=0.385 Sum_probs=29.4
Q ss_pred HHHHHHHHhCCCCCCC-hHHHHHHHHHHhhcCCCcccchhc
Q 019908 32 AYRKAAMKNHPDKGGD-PEKFKELGQAYEVLSDPEKRDIYD 71 (334)
Q Consensus 32 ayr~la~~~hPd~~~~-~~~f~~i~~Ay~~L~d~~~r~~YD 71 (334)
..|...+.-||+...+ .+..+.|.+.|..|++.++....+
T Consensus 15 ~~r~~~~~~~p~~~~~~~eisk~lg~~Wk~ls~~eK~~y~~ 55 (71)
T 1ckt_A 15 TCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFED 55 (71)
T ss_dssp HHHHHHHHHCTTCCCCHHHHHHHHHHHHHTCCTTTSHHHHH
T ss_pred HHHHHHHHHCCCCCCcHHHHHHHHHHHHhhCCHHHHHHHHH
Confidence 4555556779987643 588999999999999877655444
No 69
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=27.35 E-value=43 Score=21.54 Aligned_cols=7 Identities=29% Similarity=0.995 Sum_probs=3.6
Q ss_pred EeCCCCc
Q 019908 189 HVCPECR 195 (334)
Q Consensus 189 ~~C~~C~ 195 (334)
..|+.|+
T Consensus 38 ~~C~kCG 44 (50)
T 3j20_Y 38 WACGKCG 44 (50)
T ss_dssp EECSSSC
T ss_pred EECCCCC
Confidence 4555554
No 70
>2cqn_A Formin-binding protein 3; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1
Probab=26.09 E-value=44 Score=23.62 Aligned_cols=50 Identities=18% Similarity=0.312 Sum_probs=35.6
Q ss_pred CHHHHHHHHHHHHHHhCCCCCCCh------HHHHHHHHHHhhcCCC-cccchhcccCh
Q 019908 25 TEDELKKAYRKAAMKNHPDKGGDP------EKFKELGQAYEVLSDP-EKRDIYDQYGE 75 (334)
Q Consensus 25 ~~~eik~ayr~la~~~hPd~~~~~------~~f~~i~~Ay~~L~d~-~~r~~YD~~G~ 75 (334)
-+..++.+|+.+.+...|...... .+|..-. +|..+.++ +.+.+|+.|=.
T Consensus 7 r~rrl~~~F~~mLk~~~p~I~~~s~We~vr~~~e~~~-~fkav~~E~eR~~lFeeYi~ 63 (77)
T 2cqn_A 7 GMKRKESAFKSMLKQAAPPIELDAVWEDIRERFVKEP-AFEDITLESERKRIFKDFMH 63 (77)
T ss_dssp SHHHHHHHHHHHHHTCSSCCCTTCCHHHHHHHHTTSH-HHHTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHccCH-HHHhcCCHHHHHHHHHHHHH
Confidence 456799999999999888776543 3444443 78888764 66778887753
No 71
>2d7l_A WD repeat and HMG-box DNA binding protein 1; high mobility group box domain, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.74 E-value=36 Score=24.16 Aligned_cols=43 Identities=21% Similarity=0.301 Sum_probs=32.8
Q ss_pred HHHHHHHHHHhCCCCCCChHHHHHHHHHHhhcCCCcccchhcc
Q 019908 30 KKAYRKAAMKNHPDKGGDPEKFKELGQAYEVLSDPEKRDIYDQ 72 (334)
Q Consensus 30 k~ayr~la~~~hPd~~~~~~~f~~i~~Ay~~L~d~~~r~~YD~ 72 (334)
-+.+|...+.-||+.....+.-+.|.+.|..|++.++....+.
T Consensus 17 ~~e~R~~ik~~~P~~~~~~eisK~lge~Wk~ls~eeK~~y~~~ 59 (81)
T 2d7l_A 17 LEENRSNILSDNPDFSDEADIIKEGMIRFRVLSTEERKVWANK 59 (81)
T ss_dssp HHHHHHHHHHHCTTCCSHHHHHHHHHHHHSSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCchhHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4557777788899976234889999999999997777655554
No 72
>1i11_A Transcription factor SOX-5; HMG BOX, DNA bending, DNA recognition, chromatin, DNA binding protein, DNA sequence specific, testis determining.; NMR {Mus musculus} SCOP: a.21.1.1
Probab=24.23 E-value=48 Score=23.09 Aligned_cols=42 Identities=24% Similarity=0.457 Sum_probs=30.5
Q ss_pred HHHHHHHHHHhCCCCCCChHHHHHHHHHHhhcCCCcccchhcc
Q 019908 30 KKAYRKAAMKNHPDKGGDPEKFKELGQAYEVLSDPEKRDIYDQ 72 (334)
Q Consensus 30 k~ayr~la~~~hPd~~~~~~~f~~i~~Ay~~L~d~~~r~~YD~ 72 (334)
.+.+|...+.-||+.. ..+..+.|.+.|..|++.++...++.
T Consensus 16 ~~~~r~~~~~~~p~~~-~~eisk~lg~~Wk~ls~eeK~~y~~~ 57 (81)
T 1i11_A 16 AKDERRKILQAFPDMH-NSNISKILGSRWKAMTNLEKQPYYEE 57 (81)
T ss_dssp HHHHHHHHHTTCSSCC-HHHHHHHHHHHHTTSCSGGGHHHHHH
T ss_pred HHHHHHHHHHHCCCCC-HHHHHHHHHhhhhhCCHHHHHHHHHH
Confidence 3456666677788764 34888999999999998776555454
No 73
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=23.42 E-value=33 Score=35.57 Aligned_cols=33 Identities=27% Similarity=0.679 Sum_probs=20.9
Q ss_pred cCCCCCCCcEEEEEEeeccceeeEEEEeCCCCccceE
Q 019908 163 KCYGCQGTGMKITTRQIGLGMIQQMQHVCPECRGAGE 199 (334)
Q Consensus 163 ~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~ 199 (334)
.|+.|.|.|.+....+. +..+..+|+.|+|+.+
T Consensus 640 ~c~~c~g~G~~~~~~~f----~~~v~~~c~~c~G~r~ 672 (842)
T 2vf7_A 640 RCEHCQGEGWVMVELLF----LPSVYAPCPVCHGTRY 672 (842)
T ss_dssp BCTTTTTCSEEEETTCS----SSCEEEECTTTTTCCB
T ss_pred ccccccCCCccchhhhc----CCccceecccccCccc
Confidence 49999999976542222 2233467888877653
No 74
>2vl6_A SSO MCM N-TER, minichromosome maintenance protein MCM; helicase, hydrolase, zinc-finger, ATP-binding, DNA-BIND ssDNA binding; 2.8A {Sulfolobus solfataricus}
Probab=23.23 E-value=3.6e+02 Score=23.20 Aligned_cols=62 Identities=19% Similarity=0.285 Sum_probs=29.0
Q ss_pred EeCCCCccce-EEEccCCCCCccCCCceeEEeEEEEEE-----eccCccCCcEEEEecCcCCCCCCCCcCEEEEEEE
Q 019908 189 HVCPECRGAG-EVISERDKCPQCKANKVTQEKKVLEVH-----VEKGMQHGQKIAFEGQADEAPDTITGDIVFILQL 259 (334)
Q Consensus 189 ~~C~~C~G~G-~~~~~~~~C~~C~G~g~~~~~~~~~v~-----Ip~G~~~G~~i~l~g~G~~~~~~~~GDL~v~i~v 259 (334)
..|+.|..+| ..+. .+.| .-....+++|. +|+|--|-+ +.+-=.++-.....|||-+.+.=+
T Consensus 169 ~~Cp~C~~~~~~~l~-~~~s-------~f~D~Q~ikiQE~pe~vp~G~~Prs-i~v~l~~dLvd~~~PGDrV~vtGI 236 (268)
T 2vl6_A 169 TICPKCGKPGQFRLI-PEKT-------KLIDWQKAVIQERPEEVPSGQLPRQ-LEIILEDDLVDSARPGDRVKVTGI 236 (268)
T ss_dssp SBCTTTCCBCEEEEC-GGGC-------EEEEEEEEEEECCGGGSCTTSCCCE-EEEEEEGGGTTSSCTTCEEEEEEE
T ss_pred ccCCCCCCCCCEEEe-cCcc-------EEEeeEEEEEEeCCCCCCCCCCCcE-EEEEEccCccCcccCCCEEEEEEE
Confidence 5677777765 2222 1111 22344566663 444544432 222223333334567888775433
No 75
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=22.78 E-value=63 Score=22.83 Aligned_cols=24 Identities=25% Similarity=0.607 Sum_probs=18.5
Q ss_pred hCCCeEEEecCCCCeEEEEcCCCc
Q 019908 284 LCGFQFALTHLDGRQLLIKSNPGE 307 (334)
Q Consensus 284 l~G~~~~i~tldG~~l~v~i~~g~ 307 (334)
|-|..+.|.+++|+.+.+.+++.+
T Consensus 7 ~~~~~i~v~~~~G~~~~l~v~~~~ 30 (88)
T 1sif_A 7 LQGLQLFIKTLTGKTFTVEMEPSD 30 (88)
T ss_dssp ---CEEEEEETTSCEEEEECCTTS
T ss_pred ccceEEEEEeCCCCEEEEEECCCC
Confidence 678999999999999999888754
No 76
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=22.71 E-value=59 Score=21.83 Aligned_cols=24 Identities=25% Similarity=0.456 Sum_probs=14.9
Q ss_pred eeeCCCCCCCCCccCCcccCCCCC
Q 019908 145 NILCPKCKGKGSKSGALGKCYGCQ 168 (334)
Q Consensus 145 ~~~C~~C~G~G~~~~~~~~C~~C~ 168 (334)
..+|.-|+-+-...+.-..|..|+
T Consensus 9 ~~~C~iC~KTKFADG~Gh~C~yCk 32 (62)
T 2a20_A 9 APTCGICHKTKFADGCGHNCSYCQ 32 (62)
T ss_dssp CCCCSSSSCSCCCSSCCEEBTTTC
T ss_pred cchhhhhccceeccCCCccccccC
Confidence 346777777766655545566654
No 77
>1hry_A Human SRY; DNA, DNA-binding protein, DNA binding protein/DNA complex; HET: DNA; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1hrz_A*
Probab=22.70 E-value=58 Score=22.23 Aligned_cols=41 Identities=22% Similarity=0.419 Sum_probs=29.5
Q ss_pred HHHHHHHHHHhCCCCCCChHHHHHHHHHHhhcCCCcccchhc
Q 019908 30 KKAYRKAAMKNHPDKGGDPEKFKELGQAYEVLSDPEKRDIYD 71 (334)
Q Consensus 30 k~ayr~la~~~hPd~~~~~~~f~~i~~Ay~~L~d~~~r~~YD 71 (334)
.+.+|...+.-||+.... +..+.|.+.|..|++.++....+
T Consensus 16 ~~~~r~~~~~~~p~~~~~-eisk~lg~~Wk~ls~~eK~~y~~ 56 (76)
T 1hry_A 16 SRDQRRKMALENPRMRNS-EISKQLGYQWKMLTEAEKWPFFQ 56 (76)
T ss_dssp HHHHHHHHHHHCSCCSSS-HHHHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHCcCCCHH-HHHHHHHhHHHhCCHHHHHHHHH
Confidence 345666667778986543 88899999999999766654433
No 78
>1wz6_A HMG-box transcription factor BBX; bobby SOX homolog, HMG_BOX domain, structural genomics, NPPSFA, riken structural genomics/proteomics initiative; NMR {Mus musculus}
Probab=22.50 E-value=58 Score=22.68 Aligned_cols=42 Identities=26% Similarity=0.258 Sum_probs=30.5
Q ss_pred HHHHHHHHHHhCCCCCCChHHHHHHHHHHhhcCCCcccchhcc
Q 019908 30 KKAYRKAAMKNHPDKGGDPEKFKELGQAYEVLSDPEKRDIYDQ 72 (334)
Q Consensus 30 k~ayr~la~~~hPd~~~~~~~f~~i~~Ay~~L~d~~~r~~YD~ 72 (334)
.+.+|...+.-||+... .+..+.|.+.|..|++.++....+.
T Consensus 19 ~~~~r~~~~~~~p~~~~-~eisk~lg~~Wk~ls~~eK~~y~~~ 60 (82)
T 1wz6_A 19 CKRHRSLVRQEHPRLDN-RGATKILADWWAVLDPKEKQKYTDM 60 (82)
T ss_dssp HHHHHHHHHHHCSSSCT-THHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCH-HHHHHHHHHHHhhCCHHHHHHHHHH
Confidence 45567777777898653 3888999999999997766544443
No 79
>3zxf_A Galectin-7; sugar binding protein; 1.38A {Homo sapiens} SCOP: b.29.1.3 PDB: 1bkz_A 2gal_A* 3gal_A* 4gal_A* 5gal_A* 3zxe_A*
Probab=21.77 E-value=1.5e+02 Score=23.05 Aligned_cols=42 Identities=10% Similarity=0.200 Sum_probs=29.1
Q ss_pred EEEEeccCccCCcEEEEecCcCCCCC----------CCCcCEEEEEEEEeCC
Q 019908 222 LEVHVEKGMQHGQKIAFEGQADEAPD----------TITGDIVFILQLKEHP 263 (334)
Q Consensus 222 ~~v~Ip~G~~~G~~i~l~g~G~~~~~----------~~~GDL~v~i~v~~~~ 263 (334)
..-.||.|+++|+.|++.|.=.+... ....|+.++++..-++
T Consensus 8 ~~~~i~~gl~~G~~i~I~G~v~~~a~rF~Inl~~g~~~~~dialHfnpRf~~ 59 (138)
T 3zxf_A 8 HKSSLPEGIRPGTVLRIRGLVPPNASRFHVNLLCGEEQGSDAALHFNPRLDT 59 (138)
T ss_dssp EEEECTTCCCSSEEEEEEEEECTTCCBEEEEEESSSSTTCCEEEEEEEETTT
T ss_pred EEeecCCCCCCCCEEEEEEEECCCCCEEEEEeeeCCCCCCCEEEEEEEEcCC
Confidence 66789999999999999996533211 1235777777766543
No 80
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=21.66 E-value=47 Score=26.23 Aligned_cols=9 Identities=33% Similarity=1.069 Sum_probs=4.7
Q ss_pred CCCCccCCC
Q 019908 205 DKCPQCKAN 213 (334)
Q Consensus 205 ~~C~~C~G~ 213 (334)
..||.|.+.
T Consensus 108 ~~CP~Cgs~ 116 (139)
T 3a43_A 108 LACPKCGSH 116 (139)
T ss_dssp CSCSSSSCC
T ss_pred CcCccccCC
Confidence 445555544
No 81
>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1
Probab=21.62 E-value=9.1 Score=37.52 Aligned_cols=66 Identities=18% Similarity=0.406 Sum_probs=34.9
Q ss_pred eCCCCCCCCCccCC-----cccCCCCCCCcEEEEEEe--eccceeeEEEEeCCCCccceEEEccCCCCCccCCCc
Q 019908 147 LCPKCKGKGSKSGA-----LGKCYGCQGTGMKITTRQ--IGLGMIQQMQHVCPECRGAGEVISERDKCPQCKANK 214 (334)
Q Consensus 147 ~C~~C~G~G~~~~~-----~~~C~~C~G~G~~~~~~~--~~~g~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g 214 (334)
.|..||+.+..... ...|-.|++.-..+.... ..+-....-...|..|+-.-.. ....|..|+...
T Consensus 14 ~C~~CH~~~~~~~~~~~~~~~~C~~CH~~~~~~~~~~~~~~~h~~~~~~~~C~~CH~~h~~--~~~~c~~ch~~~ 86 (566)
T 1qo8_A 14 SCQSCHAKPIKVTDSETHENAQCKSCHGEYAELANDKLQFDPHNSHLGDINCTSCHKGHEE--PKFYCNECHSFD 86 (566)
T ss_dssp CGGGTSCSSCCCCTTCHHHHHHHHHHHCCHHHHCCSSSSSCTTSSTTCSCCGGGTSCSSSC--CCCGGGGTCCCC
T ss_pred ChhhhCCCccccccccCccCCHHhhhCcCHHHHhhccccCCcchhcCCCCCchhhCcCCcC--cCchhhhhcCCC
Confidence 69999988653211 135999997522111000 0000000012589999964432 246799998754
No 82
>3nm9_A HMG-D, high mobility group protein D; DNA bending, non-sequence-specific, HMG chromosomal protein; HET: DNA; 2.85A {Drosophila melanogaster} SCOP: a.21.1.1 PDB: 1e7j_A* 1hma_A 1qrv_A*
Probab=21.24 E-value=79 Score=21.44 Aligned_cols=39 Identities=15% Similarity=0.293 Sum_probs=29.0
Q ss_pred HHHHHHHHHHhCCCCCCChHHHHHHHHHHhhcCCCcccchhcc
Q 019908 30 KKAYRKAAMKNHPDKGGDPEKFKELGQAYEVLSDPEKRDIYDQ 72 (334)
Q Consensus 30 k~ayr~la~~~hPd~~~~~~~f~~i~~Ay~~L~d~~~r~~YD~ 72 (334)
.+.+|...+.-||+.. ..+..+.|.+.|..|++ |+.|..
T Consensus 15 ~~~~r~~~~~~~p~~~-~~eisk~lg~~Wk~ls~---K~~y~~ 53 (73)
T 3nm9_A 15 LNSARESIKRENPGIK-VTEVAKRGGELWRAMKD---KSEWEA 53 (73)
T ss_dssp HHHHHHHHHHHSSSCC-HHHHHHHHHHHHHHCSC---CHHHHH
T ss_pred HHHHHHHHHHHCCCCC-HHHHHHHHHHHHHcCCc---hHHHHH
Confidence 3456666777789865 34888999999999987 666653
No 83
>4a3n_A Transcription factor SOX-17; 2.40A {Homo sapiens} SCOP: a.21.1.0
Probab=21.20 E-value=34 Score=23.00 Aligned_cols=41 Identities=32% Similarity=0.437 Sum_probs=30.3
Q ss_pred HHHHHHHHHHhCCCCCCChHHHHHHHHHHhhcCCCcccchhc
Q 019908 30 KKAYRKAAMKNHPDKGGDPEKFKELGQAYEVLSDPEKRDIYD 71 (334)
Q Consensus 30 k~ayr~la~~~hPd~~~~~~~f~~i~~Ay~~L~d~~~r~~YD 71 (334)
.+.+|...+.-||+.. ..+..+.|.+.|..|++.++....+
T Consensus 14 ~~~~r~~~~~~~p~~~-~~eisk~lg~~Wk~ls~~eK~~y~~ 54 (71)
T 4a3n_A 14 AKDERKRLAQQNPDLH-NAELSKMLGKSWKALTLAEKRPFVE 54 (71)
T ss_dssp HHHHHHHHHTTCTTSC-HHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 4566777778888865 3488889999999999776654444
No 84
>1cf7_A Protein (transcription factor E2F-4); E2F, winged-helix, DNA-binding domain, cell cycle, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: a.4.5.17
Probab=21.14 E-value=95 Score=21.76 Aligned_cols=44 Identities=25% Similarity=0.209 Sum_probs=32.2
Q ss_pred CCCHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHhhcCCCcccchhccc
Q 019908 23 SATEDELKKAYRKAAMKNHPDKGGDPEKFKELGQAYEVLSDPEKRDIYDQY 73 (334)
Q Consensus 23 ~a~~~eik~ayr~la~~~hPd~~~~~~~f~~i~~Ay~~L~d~~~r~~YD~~ 73 (334)
+.|...+-+.|-++... +|+..-+ |++|-+.|.-.++|++||-.
T Consensus 9 ~~SL~~lt~kFi~l~~~-~~~~~i~------l~~aa~~L~v~~kRRiYDI~ 52 (76)
T 1cf7_A 9 EKSLGLLTTKFVSLLQE-AKDGVLD------LKLAADTLAVRQKRRIYDIT 52 (76)
T ss_dssp TTCHHHHHHHHHHHHHH-SSTTEEE------HHHHHHHTTTCCTHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHh-CCCCcCc------HHHHHHHhCCccceehhhHH
Confidence 45677788888887765 4554334 88888888865899999963
No 85
>1r4v_A Hypothetical protein AQ_328; structural genomics, all-alpha, histon fold, PSI, protein ST initiative, midwest center for structural genomics; HET: MSE; 1.90A {Aquifex aeolicus} SCOP: a.22.1.4
Probab=21.05 E-value=1.1e+02 Score=25.03 Aligned_cols=32 Identities=13% Similarity=0.046 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHhCCCCCCChHHHHHHHHHHhh
Q 019908 29 LKKAYRKAAMKNHPDKGGDPEKFKELGQAYEV 60 (334)
Q Consensus 29 ik~ayr~la~~~hPd~~~~~~~f~~i~~Ay~~ 60 (334)
+-=|+-+..+..||++||.++.+.+...-.+.
T Consensus 138 L~valARv~K~l~Pernp~~ehwE~a~~v~Dl 169 (171)
T 1r4v_A 138 LLLMHADVIKKATGERKPSREAMEFVAQIVDK 169 (171)
T ss_dssp HHHHHHHHHHHHCCCSSCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHh
Confidence 44567788899999999988877766555443
No 86
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=21.03 E-value=86 Score=28.78 Aligned_cols=30 Identities=10% Similarity=0.144 Sum_probs=23.4
Q ss_pred CccccccccCCCCCCCHHHHHHHHHHHHHHhC
Q 019908 10 NNTKYYEILGVSKSATEDELKKAYRKAAMKNH 41 (334)
Q Consensus 10 ~~~~~y~iLgv~~~a~~~eik~ayr~la~~~h 41 (334)
+...|+++|.. +.+.++|+..++.+...|.
T Consensus 217 ~~~~W~~~~~~--~vt~~~l~~i~~~il~~y~ 246 (358)
T 2pk2_A 217 DGKHWWEYVDA--TVTLELLDELTHEFLQILE 246 (358)
T ss_dssp SSCCTTTTSCS--SCCHHHHHHHHHHHHHHTT
T ss_pred cccchHHHHhc--cCCHHHHHHHHHHHHHHHH
Confidence 34568888743 5689999999999998873
No 87
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=20.54 E-value=50 Score=34.80 Aligned_cols=32 Identities=22% Similarity=0.652 Sum_probs=21.0
Q ss_pred cCCCCCCCcEEEEEEeeccceeeEEEEeCCCCccce
Q 019908 163 KCYGCQGTGMKITTRQIGLGMIQQMQHVCPECRGAG 198 (334)
Q Consensus 163 ~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G 198 (334)
.|+.|.|.|.+....+ +...+..+|+.|.|..
T Consensus 755 rC~~C~g~G~i~~em~----fl~~v~~~ce~c~G~r 786 (972)
T 2r6f_A 755 RCEACHGDGIIKIEMH----FLPDVYVPCEVCHGKR 786 (972)
T ss_dssp BCTTTTTCSEEEECCS----SSCCEEEECTTTTTCC
T ss_pred cccccccccceeeehh----cccccccccccccccc
Confidence 4999999998754322 2223346788888764
No 88
>3ga8_A HTH-type transcriptional regulator MQSA (YGIT/B30; helix-turn-helix, Zn-binding protein, DNA-binding, transcrip transcription regulation; HET: PE4; 1.70A {Escherichia coli k-12} PDB: 3hi2_A
Probab=20.45 E-value=1.6e+02 Score=20.24 Aligned_cols=30 Identities=27% Similarity=0.619 Sum_probs=17.3
Q ss_pred CCCccCCCceeEEeEEEEEEeccCccCCcEEEEec
Q 019908 206 KCPQCKANKVTQEKKVLEVHVEKGMQHGQKIAFEG 240 (334)
Q Consensus 206 ~C~~C~G~g~~~~~~~~~v~Ip~G~~~G~~i~l~g 240 (334)
+|+.|.+...+.....+++.. .|..+.|++
T Consensus 4 ~Cp~Cg~~~l~~~~~~~~~~~-----~G~~~~I~~ 33 (78)
T 3ga8_A 4 KCPVCHQGEMVSGIKDIPYTF-----RGRKTVLKG 33 (78)
T ss_dssp BCTTTSSSBEEEEEEEEEEEE-----TTEEEEEEE
T ss_pred ECCCCCCCeeEeEEEEEEEEE-----CCEEEEEcC
Confidence 455555544555566666654 466677765
No 89
>2zhn_A Galectin-9; beta sandwich, carbohydrate binding protein, sugar protein; HET: NAG GAL; 1.30A {Homo sapiens} PDB: 2eak_A* 2eal_A* 2zhk_A* 2zhm_A* 2zhl_A* 2yy1_A* 3lsd_A 3lse_A*
Probab=20.36 E-value=2.1e+02 Score=22.34 Aligned_cols=41 Identities=20% Similarity=0.340 Sum_probs=28.2
Q ss_pred EEEEeccCccCCcEEEEecCc---CCCC-------CCCCcCEEEEEEEEeC
Q 019908 222 LEVHVEKGMQHGQKIAFEGQA---DEAP-------DTITGDIVFILQLKEH 262 (334)
Q Consensus 222 ~~v~Ip~G~~~G~~i~l~g~G---~~~~-------~~~~GDL~v~i~v~~~ 262 (334)
....||.|+.+|+.|++.|.= ++.. +...+|+.++++..-+
T Consensus 17 ~~~~i~~gl~~G~~i~I~G~~~~~~~~rF~Inl~~g~~~~dialHfnpRf~ 67 (148)
T 2zhn_A 17 FSGTIQGGLQDGLQITVNGTVLSSSGTRFAVNFQTGFSGNDIAFHFNPRFE 67 (148)
T ss_dssp EEEECTTCCCTTCEEEEEEEECSSSCSBEEEEEESSSSSSCEEEEEEEECS
T ss_pred EEEECCCCCccCCEEEEEEEECCCCCCEEEEEEeeCCCCCCEEEEEEEEEC
Confidence 677899999999999999943 2210 1113577777776654
No 90
>2crj_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; structural DNA-binding protein BRAF35, DNA-bending; NMR {Mus musculus}
Probab=20.03 E-value=61 Score=23.24 Aligned_cols=42 Identities=31% Similarity=0.392 Sum_probs=30.8
Q ss_pred HHHHHHHHHHhCCCCCCChHHHHHHHHHHhhcCCCcccchhcc
Q 019908 30 KKAYRKAAMKNHPDKGGDPEKFKELGQAYEVLSDPEKRDIYDQ 72 (334)
Q Consensus 30 k~ayr~la~~~hPd~~~~~~~f~~i~~Ay~~L~d~~~r~~YD~ 72 (334)
.+.+|...+.-||+.. ..+.-+.|.+.|..|++.++....+.
T Consensus 19 ~~~~r~~~~~~~p~~~-~~eisk~lg~~Wk~ls~eeK~~Y~~~ 60 (92)
T 2crj_A 19 LNERREQIRTRHPDLP-FPEITKMLGAEWSKLQPAEKQRYLDE 60 (92)
T ss_dssp HHHHHHHHHHHCTTCC-HHHHHHHHHHHHHTCCTTHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3456666777788865 34888999999999998877554443
Done!