BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019909
(334 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2UWC|A Chain A, Crystal Structure Of Nasturtium Xyloglucan Hydrolase
Isoform Nxg2
pdb|2UWC|B Chain B, Crystal Structure Of Nasturtium Xyloglucan Hydrolase
Isoform Nxg2
Length = 271
Score = 214 bits (544), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 112/264 (42%), Positives = 162/264 (61%), Gaps = 14/264 (5%)
Query: 32 FDEGYSHLFGHDNLVVHTDGKSVHLSLDERTGSGFVSHDLYLHGFFSASIKLPADYTAGV 91
FD+GY++L+G + V D S+ + LD +GSGF S + Y G+F A+IKL + YTAGV
Sbjct: 19 FDQGYTNLWGPQHQRV--DQGSLTIWLDSTSGSGFKSINRYRSGYFGANIKLQSGYTAGV 76
Query: 92 VVAFYMSNGDMFEKNHDEIDFEFLGNIRGKDWRIQTNIYGNGSTS---IGREERYNLWFD 148
+ +FY+SN + HDEID EFLG I GK + +QTN++ GS IGRE R +LWFD
Sbjct: 77 ITSFYLSNNQDYPGKHDEIDIEFLGTIPGKPYTLQTNVFIEGSGDYNIIGRELRIHLWFD 136
Query: 149 PSDDFHQYSILWTDSQIIFYIDGIPIREFKRTASMGGDFPAKPMSLYATIWDGSDWATNG 208
P+ D+H Y+I WT S+IIF++D +PIR + R + FP +PM +Y ++WD S WAT
Sbjct: 137 PTQDYHNYAIYWTPSEIIFFVDDVPIRRYPRKSD--ATFPLRPMWVYGSVWDASSWATEN 194
Query: 209 GKYRVNYKYAPYVTEFSDFVLHGCSFDPIEQTSSKCDITESSKVSIPTGVSPSQRIKMEN 268
GKY+ +Y+Y P+V ++ DF L C+ + +S C+ + VS +S Q ME
Sbjct: 195 GKYKADYRYQPFVGKYEDFKLGSCTV----EAASSCN---PASVSPYGQLSQQQVAAMEW 247
Query: 269 FRRKHMTYSYCYDQIRYKVPPFEC 292
++ +M Y+YC D R EC
Sbjct: 248 VQKNYMVYNYCDDPTRDHTLTPEC 271
>pdb|2UWA|A Chain A, Crystal Structure Of The Nasturtium Seedling Xyloglucanase
Isoform Nxg1
pdb|2UWA|B Chain B, Crystal Structure Of The Nasturtium Seedling Xyloglucanase
Isoform Nxg1
pdb|2UWA|C Chain C, Crystal Structure Of The Nasturtium Seedling Xyloglucanase
Isoform Nxg1
Length = 274
Score = 213 bits (541), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 111/264 (42%), Positives = 162/264 (61%), Gaps = 14/264 (5%)
Query: 32 FDEGYSHLFGHDNLVVHTDGKSVHLSLDERTGSGFVSHDLYLHGFFSASIKLPADYTAGV 91
FD+GY++L+G + V D S+ + LD +GSGF S + Y G+F A+IKL + YTAGV
Sbjct: 22 FDQGYTNLWGPQHQRV--DQGSLTIWLDSTSGSGFKSINRYRSGYFGANIKLQSGYTAGV 79
Query: 92 VVAFYMSNGDMFEKNHDEIDFEFLGNIRGKDWRIQTNIYGNGSTS---IGREERYNLWFD 148
+ +FY+SN + HDEID EFLG I GK + +QTN++ GS IGRE R +LWFD
Sbjct: 80 ITSFYLSNNQDYPGKHDEIDIEFLGTIPGKPYTLQTNVFIEGSGDYNIIGREMRIHLWFD 139
Query: 149 PSDDFHQYSILWTDSQIIFYIDGIPIREFKRTASMGGDFPAKPMSLYATIWDGSDWATNG 208
P+ D+H Y+I WT S+IIF++D +PIR + R + FP +P+ +Y ++WD S WAT
Sbjct: 140 PTQDYHNYAIYWTPSEIIFFVDDVPIRRYPRKSD--ATFPLRPLWVYGSVWDASSWATEN 197
Query: 209 GKYRVNYKYAPYVTEFSDFVLHGCSFDPIEQTSSKCDITESSKVSIPTGVSPSQRIKMEN 268
GKY+ +Y+Y P+V ++ DF L C+ + +S C+ + VS +S Q ME
Sbjct: 198 GKYKADYRYQPFVGKYEDFKLGSCTV----EAASSCN---PASVSPYGQLSQQQVAAMEW 250
Query: 269 FRRKHMTYSYCYDQIRYKVPPFEC 292
++ +M Y+YC D R EC
Sbjct: 251 VQKNYMVYNYCDDPTRDHTLTPEC 274
>pdb|2VH9|A Chain A, Crystal Structure Of Nxg1-Deltayniig In Complex With Xllg,
A Xyloglucan Derived Oligosaccharide
pdb|2VH9|B Chain B, Crystal Structure Of Nxg1-Deltayniig In Complex With Xllg,
A Xyloglucan Derived Oligosaccharide
Length = 290
Score = 209 bits (533), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 109/261 (41%), Positives = 160/261 (61%), Gaps = 13/261 (4%)
Query: 32 FDEGYSHLFGHDNLVVHTDGKSVHLSLDERTGSGFVSHDLYLHGFFSASIKLPADYTAGV 91
FD+GY++L+G + V D S+ + LD +GSGF S + Y G+F A+IKL + YTAGV
Sbjct: 43 FDQGYTNLWGPQHQRV--DQGSLTIWLDSTSGSGFKSINRYRSGYFGANIKLQSGYTAGV 100
Query: 92 VVAFYMSNGDMFEKNHDEIDFEFLGNIRGKDWRIQTNIYGNGSTSIGREERYNLWFDPSD 151
+ +FY+SN + HDEID EFLG I GK + +QTN++ GS RE R +LWFDP+
Sbjct: 101 ITSFYLSNNQDYPGKHDEIDIEFLGTIPGKPYTLQTNVFIEGSGD--REMRIHLWFDPTQ 158
Query: 152 DFHQYSILWTDSQIIFYIDGIPIREFKRTASMGGDFPAKPMSLYATIWDGSDWATNGGKY 211
D+H Y+I WT S+IIF++D +PIR + R + FP +P+ +Y ++WD S WAT GKY
Sbjct: 159 DYHNYAIYWTPSEIIFFVDDVPIRRYPRKSD--ATFPLRPLWVYGSVWDASSWATENGKY 216
Query: 212 RVNYKYAPYVTEFSDFVLHGCSFDPIEQTSSKCDITESSKVSIPTGVSPSQRIKMENFRR 271
+ +Y+Y P+V ++ DF L C+ + +S C+ + VS +S Q ME ++
Sbjct: 217 KADYRYQPFVGKYEDFKLGSCTV----EAASSCN---PASVSPYGQLSQQQVAAMEWVQK 269
Query: 272 KHMTYSYCYDQIRYKVPPFEC 292
+M Y+YC D R EC
Sbjct: 270 NYMVYNYCDDPTRDHTLTPEC 290
>pdb|2UWB|A Chain A, Crystal Structure Of The Nasturtium Seedling Mutant
Xyloglucanase Isoform Nxg1-Delta-Yniig
pdb|2UWB|B Chain B, Crystal Structure Of The Nasturtium Seedling Mutant
Xyloglucanase Isoform Nxg1-Delta-Yniig
Length = 267
Score = 209 bits (532), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 109/261 (41%), Positives = 160/261 (61%), Gaps = 13/261 (4%)
Query: 32 FDEGYSHLFGHDNLVVHTDGKSVHLSLDERTGSGFVSHDLYLHGFFSASIKLPADYTAGV 91
FD+GY++L+G + V D S+ + LD +GSGF S + Y G+F A+IKL + YTAGV
Sbjct: 20 FDQGYTNLWGPQHQRV--DQGSLTIWLDSTSGSGFKSINRYRSGYFGANIKLQSGYTAGV 77
Query: 92 VVAFYMSNGDMFEKNHDEIDFEFLGNIRGKDWRIQTNIYGNGSTSIGREERYNLWFDPSD 151
+ +FY+SN + HDEID EFLG I GK + +QTN++ GS RE R +LWFDP+
Sbjct: 78 ITSFYLSNNQDYPGKHDEIDIEFLGTIPGKPYTLQTNVFIEGSGD--REMRIHLWFDPTQ 135
Query: 152 DFHQYSILWTDSQIIFYIDGIPIREFKRTASMGGDFPAKPMSLYATIWDGSDWATNGGKY 211
D+H Y+I WT S+IIF++D +PIR + R + FP +P+ +Y ++WD S WAT GKY
Sbjct: 136 DYHNYAIYWTPSEIIFFVDDVPIRRYPRKSD--ATFPLRPLWVYGSVWDASSWATENGKY 193
Query: 212 RVNYKYAPYVTEFSDFVLHGCSFDPIEQTSSKCDITESSKVSIPTGVSPSQRIKMENFRR 271
+ +Y+Y P+V ++ DF L C+ + +S C+ + VS +S Q ME ++
Sbjct: 194 KADYRYQPFVGKYEDFKLGSCTV----EAASSCN---PASVSPYGQLSQQQVAAMEWVQK 246
Query: 272 KHMTYSYCYDQIRYKVPPFEC 292
+M Y+YC D R EC
Sbjct: 247 NYMVYNYCDDPTRDHTLTPEC 267
>pdb|1UMZ|A Chain A, Xyloglucan Endotransglycosylase In Complex With The
Xyloglucan Nonasaccharide Xllg.
pdb|1UMZ|B Chain B, Xyloglucan Endotransglycosylase In Complex With The
Xyloglucan Nonasaccharide Xllg.
pdb|1UN1|A Chain A, Xyloglucan Endotransglycosylase Native Structure.
pdb|1UN1|B Chain B, Xyloglucan Endotransglycosylase Native Structure
Length = 278
Score = 177 bits (448), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 97/267 (36%), Positives = 145/267 (54%), Gaps = 13/267 (4%)
Query: 30 VPFDEGYSHLFGHDNLVVHTDGKSVHLSLDERTGSGFVSHDLYLHGFFSASIKLPADYTA 89
V F Y + D++ G + L LD+ TG+GF S YL G FS +KL +A
Sbjct: 15 VAFGRNYVPTWAFDHIKYFNGGNEIQLHLDKYTGTGFQSKGSYLFGHFSMQMKLVPGDSA 74
Query: 90 GVVVAFYMSNGDMFEKNHDEIDFEFLGNIRGKDWRIQTNIYGNGSTSIGREERYNLWFDP 149
G V AFY+S+ + HDEIDFEFLGN G+ + +QTN++ G RE+R LWFDP
Sbjct: 75 GTVTAFYLSSQN---SEHDEIDFEFLGNRTGQPYILQTNVFTGGKGD--REQRIYLWFDP 129
Query: 150 SDDFHQYSILWTDSQIIFYIDGIPIREFKRTASMGGDFP-AKPMSLYATIWDGSDWATNG 208
+ +FH YS+LW I+F +D +PIR FK +G FP +PM +Y+++W+ DWAT G
Sbjct: 130 TKEFHYYSVLWNMYMIVFLVDDVPIRVFKNCKDLGVKFPFNQPMKIYSSLWNADDWATRG 189
Query: 209 GKYRVNYKYAPYVTEFSDFVLHGCSFDPIEQTSSKCDITESSK---VSIPTGVSPSQRIK 265
G + ++ AP++ + F + GC +K T+ ++ + Q +
Sbjct: 190 GLEKTDWSKAPFIASYRSFHIDGCE----ASVEAKFCATQGARWWDQKEFQDLDAFQYRR 245
Query: 266 MENFRRKHMTYSYCYDQIRYKVPPFEC 292
+ R+K+ Y+YC D+ RY P EC
Sbjct: 246 LSWVRQKYTIYNYCTDRSRYPSMPPEC 272
>pdb|3D6E|A Chain A, Crystal Structure Of The Engineered 1,3-1,4-Beta-Glucanase
Protein From Bacillus Licheniformis
pdb|3D6E|B Chain B, Crystal Structure Of The Engineered 1,3-1,4-Beta-Glucanase
Protein From Bacillus Licheniformis
Length = 201
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 51/147 (34%), Positives = 74/147 (50%), Gaps = 15/147 (10%)
Query: 57 SLDERTGSGFVSHDLYLHGFFSASIKLPADYTAGVVVAFYMSNGDMFEKNHDEIDFEFLG 116
S ++ G G S Y +G + ++K PA G+V AFY S G DEID EFLG
Sbjct: 42 SYNKFDGGGNQSVQTYGYGLYEVNMK-PAK-NVGIVSAFYTSTGPTDGTPWDEIDIEFLG 99
Query: 117 NIRGKDWRIQTNIYGNGSTSIGREER-YNLWFDPSDDFHQYSILWTDSQIIFYIDGIPIR 175
K +Q N Y NG +G E+ NL FD ++ +H Y+ W + I +Y+DG
Sbjct: 100 KDTTK---VQFNYYTNG---VGNHEKIVNLGFDAANSYHTYAFDWQPNSIKWYVDG---- 149
Query: 176 EFKRTASMGGDFPAKPMSLYATIWDGS 202
+ K TA+ P P +Y ++W G+
Sbjct: 150 QLKHTATT--QIPQTPGKIYMSLWAGA 174
>pdb|1CPM|A Chain A, Native-Like In Vivo Folding Of A Circularly Permuted
Jellyroll Protein Shown By Crystal Structure Analysis
Length = 214
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 59/182 (32%), Positives = 87/182 (47%), Gaps = 21/182 (11%)
Query: 66 FVSHDLYLHGFFSASIKLPADYTAGVVVAFYMSNGDMFEKNHDEIDFEFLGNIRGKDWRI 125
+ S ++Y +G + S+K PA T G+V +F+ G DEID EFLG K +
Sbjct: 6 YRSTNIYGYGLYEVSMK-PAKNT-GIVSSFFTYTGPAHGTQWDEIDIEFLGKDTTK---V 60
Query: 126 QTNIYGNGSTSIGREERYNLWFDPSDDFHQYSILWTDSQIIFYIDGIPIREFKRTASMGG 185
Q N Y NG G E+ +L FD S FH Y+ W I +Y+DG+ K TA+
Sbjct: 61 QFNYYTNGVG--GHEKVISLGFDASKGFHTYAFDWQPGYIKWYVDGV----LKHTATA-- 112
Query: 186 DFPAKPMSLYATIWDGS---DWATNGGKYR-VNYKYAPY-VTEFSDFVLHGCSFDPIEQT 240
+ P+ P + +W+G+ DW G Y N YA Y +++ G F+P
Sbjct: 113 NIPSTPGKIMMNLWNGTGVDDWL---GSYNGANPLYAEYDWVKYTSNQTGGSFFEPFNSY 169
Query: 241 SS 242
+S
Sbjct: 170 NS 171
>pdb|1CPN|A Chain A, Native-Like In Vivo Folding Of A Circularly Permuted
Jellyroll Protein Shown By Crystal Structure Analysis
Length = 208
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 60/186 (32%), Positives = 87/186 (46%), Gaps = 21/186 (11%)
Query: 66 FVSHDLYLHGFFSASIKLPADYTAGVVVAFYMSNGDMFEKNHDEIDFEFLGNIRGKDWRI 125
+ S ++Y +G + S+K PA T G+V +F+ G DEID EFLG K +
Sbjct: 6 YRSTNIYGYGLYEVSMK-PAKNT-GIVSSFFTYTGPAHGTQWDEIDIEFLGKDTTK---V 60
Query: 126 QTNIYGNGSTSIGREERYNLWFDPSDDFHQYSILWTDSQIIFYIDGIPIREFKRTASMGG 185
Q N Y NG G E+ +L FD S FH Y+ W I +Y+DG+ K TA+
Sbjct: 61 QFNYYTNGVG--GHEKVISLGFDASKGFHTYAFDWQPGYIKWYVDGV----LKHTATA-- 112
Query: 186 DFPAKPMSLYATIWDGS---DW--ATNGGK-YRVNYKYAPYVTEFSDFVLHGCSFDPIEQ 239
+ P+ P + +W+G+ DW + NG Y + Y + S F F+P
Sbjct: 113 NIPSTPGKIMMNLWNGTGVDDWLGSYNGANPLYAEYDWVKYTSNGSVFWEPKSYFNP--S 170
Query: 240 TSSKCD 245
T K D
Sbjct: 171 TWEKAD 176
>pdb|1AXK|A Chain A, Engineered Bacillus Bifunctional Enzyme Gluxyn-1
pdb|1AXK|B Chain B, Engineered Bacillus Bifunctional Enzyme Gluxyn-1
Length = 394
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 49/142 (34%), Positives = 72/142 (50%), Gaps = 16/142 (11%)
Query: 66 FVSHDLYLHGFFSASIKLPADYTAGVVVAFYMSNGDMFEKNHDEIDFEFLGNIRGKDWRI 125
+ S ++Y +G + S+K PA T G+V +F+ G DEID EFLG K +
Sbjct: 6 YRSTNIYGYGLYEVSMK-PAKNT-GIVSSFFTYTGPAHGTQWDEIDIEFLGKDTTK---V 60
Query: 126 QTNIYGNGSTSIGREERYNLWFDPSDDFHQYSILWTDSQIIFYIDGIPIREFKRTASMGG 185
Q N Y NG G E+ +L FD S FH Y+ W I +Y+DG+ K TA+
Sbjct: 61 QFNYYTNGVG--GHEKVISLGFDASKGFHTYAFDWQPGYIKWYVDGV----LKHTATA-- 112
Query: 186 DFPAKPMSLYATIWDGS---DW 204
+ P+ P + +W+G+ DW
Sbjct: 113 NIPSTPGKIMMNLWNGTGVDDW 134
>pdb|1BYH|A Chain A, Molecular And Active-Site Structure Of A Bacillus
(1-3,1-4)- Beta-Glucanase
pdb|1GLH|A Chain A, Cation Binding To A Bacillus (1,3-1,4)-Beta-Glucanase.
Geometry, Affinity And Effect On Protein Stability
pdb|2AYH|A Chain A, Crystal And Molecular Structure At 1.6 Angstroms
Resolution Of The Hybrid Bacillus
Endo-1,3-1,4-Beta-D-Glucan 4- Glucanohydrolase H(A16-M)
Length = 214
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 49/142 (34%), Positives = 72/142 (50%), Gaps = 16/142 (11%)
Query: 66 FVSHDLYLHGFFSASIKLPADYTAGVVVAFYMSNGDMFEKNHDEIDFEFLGNIRGKDWRI 125
+ S ++Y +G + S+K PA T G+V +F+ G DEID EFLG K +
Sbjct: 64 YRSTNIYGYGLYEVSMK-PAKNT-GIVSSFFTYTGPAHGTQWDEIDIEFLGKDTTK---V 118
Query: 126 QTNIYGNGSTSIGREERYNLWFDPSDDFHQYSILWTDSQIIFYIDGIPIREFKRTASMGG 185
Q N Y NG G E+ +L FD S FH Y+ W I +Y+DG+ K TA+
Sbjct: 119 QFNYYTNGVG--GHEKVISLGFDASKGFHTYAFDWQPGYIKWYVDGV----LKHTATA-- 170
Query: 186 DFPAKPMSLYATIWDGS---DW 204
+ P+ P + +W+G+ DW
Sbjct: 171 NIPSTPGKIMMNLWNGTGVDDW 192
>pdb|1MAC|A Chain A, Crystal Structure And Site-Directed Mutagenesis Of
Bacillus Macerans Endo-1,3-1,4-Beta-Glucanase
pdb|1MAC|B Chain B, Crystal Structure And Site-Directed Mutagenesis Of
Bacillus Macerans Endo-1,3-1,4-Beta-Glucanase
Length = 212
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 49/142 (34%), Positives = 72/142 (50%), Gaps = 16/142 (11%)
Query: 66 FVSHDLYLHGFFSASIKLPADYTAGVVVAFYMSNGDMFEKNHDEIDFEFLGNIRGKDWRI 125
+ S ++Y +G + S+K PA T G+V +F+ G DEID EFLG K +
Sbjct: 62 YRSTNIYGYGLYEVSMK-PAKNT-GIVSSFFTYTGPAHGTQWDEIDIEFLGKDTTK---V 116
Query: 126 QTNIYGNGSTSIGREERYNLWFDPSDDFHQYSILWTDSQIIFYIDGIPIREFKRTASMGG 185
Q N Y NG G E+ +L FD S FH Y+ W I +Y+DG+ K TA+
Sbjct: 117 QFNYYTNGVG--GHEKVISLGFDASKGFHTYAFDWQPGYIKWYVDGV----LKHTATA-- 168
Query: 186 DFPAKPMSLYATIWDGS---DW 204
+ P+ P + +W+G+ DW
Sbjct: 169 NIPSTPGKIMMNLWNGTGVDDW 190
>pdb|1U0A|A Chain A, Crystal Structure Of The Engineered
Beta-1,3-1,4-Endoglucanase H(A16- M) In Complex With
Beta-Glucan Tetrasaccharide
pdb|1U0A|B Chain B, Crystal Structure Of The Engineered
Beta-1,3-1,4-Endoglucanase H(A16- M) In Complex With
Beta-Glucan Tetrasaccharide
pdb|1U0A|C Chain C, Crystal Structure Of The Engineered
Beta-1,3-1,4-Endoglucanase H(A16- M) In Complex With
Beta-Glucan Tetrasaccharide
pdb|1U0A|D Chain D, Crystal Structure Of The Engineered
Beta-1,3-1,4-Endoglucanase H(A16- M) In Complex With
Beta-Glucan Tetrasaccharide
Length = 214
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 47/142 (33%), Positives = 72/142 (50%), Gaps = 16/142 (11%)
Query: 66 FVSHDLYLHGFFSASIKLPADYTAGVVVAFYMSNGDMFEKNHDEIDFEFLGNIRGKDWRI 125
+ S ++Y +G + S+K PA T G+V +F+ G D+ID +FLG K +
Sbjct: 64 YRSTNIYGYGLYEVSMK-PAKNT-GIVSSFFTYTGPAHGTQWDQIDIQFLGKDTTK---V 118
Query: 126 QTNIYGNGSTSIGREERYNLWFDPSDDFHQYSILWTDSQIIFYIDGIPIREFKRTASMGG 185
Q N Y NG G E+ +L FD S FH Y+ W I +Y+DG+ K TA+
Sbjct: 119 QFNYYTNGVG--GHEKVISLGFDASKGFHTYAFDWQPGYIKWYVDGV----LKHTATA-- 170
Query: 186 DFPAKPMSLYATIWDGS---DW 204
+ P+ P + +W+G+ DW
Sbjct: 171 NIPSTPGKIMMNLWNGTGVDDW 192
>pdb|1AJK|A Chain A, Circularly Permuted (1-3,1-4)-Beta-D-Glucan 4-
Glucanohydrolase Cpa16m-84
pdb|1AJK|B Chain B, Circularly Permuted (1-3,1-4)-Beta-D-Glucan 4-
Glucanohydrolase Cpa16m-84
Length = 214
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/158 (32%), Positives = 73/158 (46%), Gaps = 19/158 (12%)
Query: 90 GVVVAFYMSNGDMFEKNHDEIDFEFLGNIRGKDWRIQTNIYGNGSTSIGREERYNLWFDP 149
G+V +F+ G DEID EFLG K +Q N Y NG G E+ +L FD
Sbjct: 3 GIVSSFFTYTGPAHGTQWDEIDIEFLGKDTTK---VQFNYYTNGVG--GHEKVISLGFDA 57
Query: 150 SDDFHQYSILWTDSQIIFYIDGIPIREFKRTASMGGDFPAKPMSLYATIWDGS---DWAT 206
S FH Y+ W I +Y+DG+ K TA+ + P+ P + +W+G+ DW
Sbjct: 58 SKGFHTYAFDWQPGYIKWYVDGV----LKHTATA--NIPSTPGKIMMNLWNGTGVDDWL- 110
Query: 207 NGGKYR-VNYKYAPY-VTEFSDFVLHGCSFDPIEQTSS 242
G Y N YA Y +++ G F+P +S
Sbjct: 111 --GSYNGANPLYAEYDWVKYTSNQTGGSFFEPFNSYNS 146
>pdb|1GBG|A Chain A, Bacillus Licheniformis Beta-Glucanase
Length = 214
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/136 (32%), Positives = 67/136 (49%), Gaps = 15/136 (11%)
Query: 68 SHDLYLHGFFSASIKLPADYTAGVVVAFYMSNGDMFEKNHDEIDFEFLGNIRGKDWRIQT 127
S Y +G + ++K PA G+V +F+ G DEID EFLG K +Q
Sbjct: 66 SVQTYGYGLYEVNMK-PAK-NVGIVSSFFTYTGPTDGTPWDEIDIEFLGKDTTK---VQF 120
Query: 128 NIYGNGSTSIGREER-YNLWFDPSDDFHQYSILWTDSQIIFYIDGIPIREFKRTASMGGD 186
N Y NG +G E+ NL FD ++ +H Y+ W + I +Y+DG + K TA+
Sbjct: 121 NYYTNG---VGNHEKIVNLGFDAANSYHTYAFDWQPNSIKWYVDG----QLKHTATT--Q 171
Query: 187 FPAKPMSLYATIWDGS 202
P P + +W+G+
Sbjct: 172 IPQTPGKIMMNLWNGA 187
>pdb|3O5S|A Chain A, Crystal Structure Of The Endo-Beta-1,3-1,4 Glucanase From
Bacillus Subtilis (Strain 168)
Length = 238
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 66/131 (50%), Gaps = 13/131 (9%)
Query: 72 YLHGFFSASIKLPADYTAGVVVAFYMSNGDMFEKNHDEIDFEFLGNIRGKDWRIQTNIYG 131
Y +G + +K PA T G+V +F+ G DEID EFLG K +Q N Y
Sbjct: 94 YGYGLYEVRMK-PAKNT-GIVSSFFTYTGPTDGTPWDEIDIEFLGKDTTK---VQFNYYT 148
Query: 132 NGSTSIGREERYNLWFDPSDDFHQYSILWTDSQIIFYIDGIPIREFKRTASMGGDFPAKP 191
NG+ + E+ +L FD ++ +H Y+ W + I +Y+DG + K TA+ P P
Sbjct: 149 NGAGN--HEKIVDLGFDAANAYHTYAFDWQPNSIKWYVDG----QLKHTAT--NQIPTTP 200
Query: 192 MSLYATIWDGS 202
+ +W+G+
Sbjct: 201 GKIMMNLWNGT 211
>pdb|3I4I|A Chain A, Crystal Structure Of A Prokaryotic Beta-1,3-1,4-Glucanase
(Lichenase) Derived From A Mouse Hindgut Metagenome
pdb|3I4I|B Chain B, Crystal Structure Of A Prokaryotic Beta-1,3-1,4-Glucanase
(Lichenase) Derived From A Mouse Hindgut Metagenome
Length = 234
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 66/140 (47%), Gaps = 13/140 (9%)
Query: 62 TGSGFVSHDLYLHGFFSASIKLPADYTAGVVVAFYMSNGDMFEKNHDEIDFEFLGNIRGK 121
G+ + + D + +G + +K PA G+V +F+ G + DEID EFLG K
Sbjct: 80 AGAEYRTRDKFGYGLYQVRMK-PAK-NPGIVSSFFTYTGPVHGTPWDEIDIEFLGKDTTK 137
Query: 122 DWRIQTNIYGNGSTSIGREERYNLWFDPSDDFHQYSILWTDSQIIFYIDGIPIREFKRTA 181
+Q N Y N + + E Y+L FD S+DFH Y+ W + I + +DG E R
Sbjct: 138 ---VQFNYYTNSAGN--HEYIYDLRFDASEDFHIYAFNWQPNYIAWLVDG---EEVYRAY 189
Query: 182 SMGGDFPAKPMSLYATIWDG 201
D P P + IW G
Sbjct: 190 D---DIPVHPGKIMLNIWPG 206
>pdb|1AJO|A Chain A, Circularly Permuted (1-3,1-4)-Beta-D-Glucan 4-
Glucanohydrolase Cpa16m-127
pdb|1AJO|B Chain B, Circularly Permuted (1-3,1-4)-Beta-D-Glucan 4-
Glucanohydrolase Cpa16m-127
Length = 214
Score = 41.2 bits (95), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 51/110 (46%), Gaps = 14/110 (12%)
Query: 138 GREERYNLWFDPSDDFHQYSILWTDSQIIFYIDGIPIREFKRTASMGGDFPAKPMSLYAT 197
G E+ +L FD S FH Y+ W I +Y+DG+ K TA+ + P+ P +
Sbjct: 3 GHEKVISLGFDASKGFHTYAFDWQPGYIKWYVDGV----LKHTATA--NIPSTPGKIMMN 56
Query: 198 IWDGS---DWATNGGKYR-VNYKYAPY-VTEFSDFVLHGCSFDPIEQTSS 242
+W+G+ DW G Y N YA Y +++ G F+P +S
Sbjct: 57 LWNGTGVDDWL---GSYNGANPLYAEYDWVKYTSNQTGGSFFEPFNSYNS 103
Score = 36.6 bits (83), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 36/68 (52%), Gaps = 5/68 (7%)
Query: 66 FVSHDLYLHGFFSASIKLPADYTAGVVVAFYMSNGDMFEKNHDEIDFEFLGNIRGKDWRI 125
+ S ++Y +G + S+K PA T G+V +F+ G DEID EFLG K +
Sbjct: 152 YRSTNIYGYGLYEVSMK-PAKNT-GIVSSFFTYTGPAHGTQWDEIDIEFLGKDTTK---V 206
Query: 126 QTNIYGNG 133
Q N Y NG
Sbjct: 207 QFNYYTNG 214
>pdb|3AXD|A Chain A, The Truncated Fibrobacter Succinogenes
1,3-1,4-Beta-D-Glucanase V18yW203Y IN APO-Form
pdb|3AXD|B Chain B, The Truncated Fibrobacter Succinogenes
1,3-1,4-Beta-D-Glucanase V18yW203Y IN APO-Form
pdb|3AXE|A Chain A, The Truncated Fibrobacter Succinogenes
1,3-1,4-Beta-D-Glucanase V18yW203Y IN COMPLEX WITH
CELLOTETRAOSE (CELLOBIOSE DENSITY WAS Observed)
Length = 249
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 61/126 (48%), Gaps = 11/126 (8%)
Query: 56 LSLDERTGSGFVSHDLYLHGFFSASIKLPADYTAGVVVAFYM-SNGDMFEKNHD--EIDF 112
+S+ + +G+ + + Y +G F A +K+ A +G V + ++ NG E+D
Sbjct: 2 VSMKDFSGAELYTLEEYQYGKFEARMKMAA--ASGTVSSMFLYQNGSEIADGRPWVEVDI 59
Query: 113 EFLGNIRGKDWRIQTNIYGNGSTSIGREERYNLWFDPSDD--FHQYSILWTDSQIIFYID 170
E LG G Q+NI + + E+++ P+ D FH Y + WT + + + +D
Sbjct: 60 EVLGKSPGS---FQSNIITGKAGAQKTSEKHHA-VSPAADQAFHTYGLEWTPNYVRWTVD 115
Query: 171 GIPIRE 176
G +R+
Sbjct: 116 GQEVRK 121
>pdb|1DYP|A Chain A, 1,3-Alpha-1,4-Beta-D-Galactose-4-Sulfate-3,6-Anhydro-D-
Galactose 4 Galactohydrolase
Length = 271
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 51/120 (42%), Gaps = 18/120 (15%)
Query: 74 HGFFSASIKLPADYTAGVVVAFY---------MSNGDMFEKNHDEIDFEFLGNIRGKDWR 124
+G++ A IK + + GV AF+ GD+ D ++ +R D
Sbjct: 97 YGYYEARIKGASTF-PGVSPAFWXYSTIDRSLTKEGDVQYSEIDVVELTQKSAVRESDHD 155
Query: 125 IQTNIYGNGSTSIGR--------EERYNLWFDPSDDFHQYSILWTDSQIIFYIDGIPIRE 176
+ + NG + R Y+L FDP +DFH Y + T +I +Y+DG + E
Sbjct: 156 LHNIVVKNGKPTWXRPGSFPQTNHNGYHLPFDPRNDFHTYGVNVTKDKITWYVDGEIVGE 215
>pdb|2VY0|A Chain A, The X-Ray Structure Of Endo-Beta-1,3-Glucanase From
Pyrococcus Furiosus
pdb|2VY0|B Chain B, The X-Ray Structure Of Endo-Beta-1,3-Glucanase From
Pyrococcus Furiosus
Length = 264
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 44/141 (31%), Positives = 66/141 (46%), Gaps = 16/141 (11%)
Query: 78 SASIKLPADYTAGVVVAFYMSNGDMFE---KNHDEID-FEFLGNIRGKDWRIQTNIYGNG 133
A IKLP G+ AF+M ++ E N EID EFLG+ + I ++G G
Sbjct: 105 EARIKLPKG--KGLWPAFWMLGSNIREVGWPNCGEIDIMEFLGH---EPRTIHGTVHGPG 159
Query: 134 -STSIGREERYNL---WFDPSDDFHQYSILWTDSQIIFYIDGIPIREF--KRTASMGGDF 187
S S G Y L D ++DFH + I+W +I +Y+DG E ++ +MG ++
Sbjct: 160 YSGSKGITRAYTLPEGVPDFTEDFHVFGIVWYPDKIKWYVDGTFYHEVTKEQVEAMGYEW 219
Query: 188 P-AKPMSLYATIWDGSDWATN 207
KP + + G W N
Sbjct: 220 VFDKPFYIILNLAVGGYWPGN 240
>pdb|3H0O|A Chain A, The Importance Of Ch-Pi Stacking Interactions Between
Carbohydrate And Aromatic Residues In Truncated
Fibrobacter Succinogenes 1,3-1,4-Beta-D-Glucanase
Length = 240
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 51/108 (47%), Gaps = 11/108 (10%)
Query: 74 HGFFSASIKLPADYTAGVVVAFYM-SNGDMFEKNHD--EIDFEFLGNIRGKDWRIQTNIY 130
+G F A +K+ A +G V + ++ NG E+D E LG G Q+NI
Sbjct: 17 YGKFEARMKMAA--ASGTVSSMFLYQNGSEIADGRPWVEVDIEVLGKNPGS---FQSNII 71
Query: 131 GNGSTSIGREERYNLWFDPSDD--FHQYSILWTDSQIIFYIDGIPIRE 176
+ + E+++ P+ D FH Y + WT + + + +DG +R+
Sbjct: 72 TGKAGAQKTSEKHHA-VSPAADQAFHTYGLEWTPNYVRWTVDGQEVRK 118
>pdb|3HR9|A Chain A, The Truncated Fibrobacter Succinogenes 1,3-1,4-Beta-D-
Glucanase F40i Mutant
Length = 241
Score = 32.3 bits (72), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 50/108 (46%), Gaps = 11/108 (10%)
Query: 74 HGFFSASIKLPADYTAGVVVAFYM-SNGDMFEKNHD--EIDFEFLGNIRGKDWRIQTNIY 130
+G F A +K+ A +G V + + NG E+D E LG G Q+NI
Sbjct: 18 YGKFEARMKMAA--ASGTVSSMILYQNGSEIADGRPWVEVDIEVLGKNPGS---FQSNII 72
Query: 131 GNGSTSIGREERYNLWFDPSDD--FHQYSILWTDSQIIFYIDGIPIRE 176
+ + E+++ P+ D FH Y + WT + + + +DG +R+
Sbjct: 73 TGKAGAQKTSEKHHA-VSPAADQAFHTYGLEWTPNYVRWTVDGQEVRK 119
>pdb|1MVE|A Chain A, Crystal Structure Of A Natural Circularly-Permutated
Jellyroll Protein: 1,3-1,4-Beta-D-Glucanase From
Fibrobacter Succinogenes
Length = 243
Score = 31.2 bits (69), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 54/125 (43%), Gaps = 9/125 (7%)
Query: 56 LSLDERTGSGFVSHDLYLHGFFSASIKLPADYTAGVVVAFYMSNGDMFEKNHD--EIDFE 113
+S + +G+ + + +G F A K A + V F NG E+D E
Sbjct: 2 VSAKDFSGAELYTLEEVQYGKFEARXKXAA-ASGTVSSXFLYQNGSEIADGRPWVEVDIE 60
Query: 114 FLGNIRGKDWRIQTNIYGNGSTSIGREERYNLWFDPSDD--FHQYSILWTDSQIIFYIDG 171
LG G Q+NI + + E+++ P+ D FH Y + WT + + + +DG
Sbjct: 61 VLGKNPGS---FQSNIITGKAGAQKTSEKHHA-VSPAADQAFHTYGLEWTPNYVRWTVDG 116
Query: 172 IPIRE 176
+R+
Sbjct: 117 QEVRK 121
>pdb|1ZM1|A Chain A, Crystal Structures Of Complex F. Succinogenes
1,3-1,4-Beta- D-Glucanase And Beta-1,3-1,4-Cellotriose
pdb|1ZM1|B Chain B, Crystal Structures Of Complex F. Succinogenes
1,3-1,4-Beta- D-Glucanase And Beta-1,3-1,4-Cellotriose
Length = 241
Score = 30.8 bits (68), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 46/107 (42%), Gaps = 9/107 (8%)
Query: 74 HGFFSASIKLPADYTAGVVVAFYMSNGDMFEKNHD--EIDFEFLGNIRGKDWRIQTNIYG 131
+G F A K A + V F NG E+D E LG G Q+NI
Sbjct: 17 YGKFEARXKXAA-ASGTVSSXFLYQNGSEIADGRPWVEVDIEVLGKNPGS---FQSNIIT 72
Query: 132 NGSTSIGREERYNLWFDPSDD--FHQYSILWTDSQIIFYIDGIPIRE 176
+ + E+++ P+ D FH Y + WT + + + +DG +R+
Sbjct: 73 GKAGAQKTSEKHHA-VSPAADQAFHTYGLEWTPNYVRWTVDGQEVRK 118
>pdb|2R49|A Chain A, Mutational And Structural Studies Of E85i Reveal The
Flexible Loops Of Fibrobacter Succinogenes
1,3-1,4-beta-d- Glucanaseglucanase
Length = 241
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 48/108 (44%), Gaps = 11/108 (10%)
Query: 74 HGFFSASIKLPADYTAGVVVAFYM-SNGDMFEKNHD--EIDFEFLGNIRGKDWRIQTNIY 130
+G F A +K+ A +G V + ++ NG E+D E LG G Q+NI
Sbjct: 18 YGKFEARMKMAA--ASGTVSSMFLYQNGSEIADGRPWVEVDIEVLGKNPGS---FQSNII 72
Query: 131 GNGSTSIGREERYNLWFDPSDD--FHQYSILWTDSQIIFYIDGIPIRE 176
G + + P+ D FH Y + WT + + + +DG +R+
Sbjct: 73 -TGKAGAQKTSIKHHAVSPAADQAFHTYGLEWTPNYVRWTVDGQEVRK 119
>pdb|3ATG|A Chain A, Endo-1,3-Beta-Glucanase From Cellulosimicrobium Cellulans
Length = 256
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 37/158 (23%), Positives = 68/158 (43%), Gaps = 17/158 (10%)
Query: 37 SHLFGHDNLVV--HTDGKSVHLSLDERTGSGFVSHDLYLHGFFSASIKLPADYTAGVVVA 94
S L G NLV+ +G + S T + +G A I++P G+ A
Sbjct: 48 SALDGQGNLVITARREGDGSYTSARMTTQGKYQPQ----YGRIEARIQIPRG--QGIWPA 101
Query: 95 FYMSNGDMFEK---NHDEIDFEFLGNIRGKDWRIQTNIYG---NGSTSIGREERYNLWFD 148
F+M G + EID + N+ + R+ ++G +G + I ++ +
Sbjct: 102 FWMLGGSFPGTPWPSSGEIDI--MENVGFEPHRVHGTVHGPGYSGGSGITGMYQHPQGWS 159
Query: 149 PSDDFHQYSILWTDSQIIFYIDGIPIREFKRTASMGGD 186
+D FH +++ W +I +++DG R AS+G +
Sbjct: 160 FADTFHTFAVDWKPGEITWFVDGQQFHRVTR-ASVGAN 196
>pdb|2HYK|A Chain A, The Crystal Structure Of An Endo-Beta-1,3-Glucanase From
Alkaliphilic Nocardiopsis Sp.Strain F96
Length = 245
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 38/190 (20%), Positives = 77/190 (40%), Gaps = 27/190 (14%)
Query: 38 HLFGHDNLVVHTDGKS---------VHLSLDERTGSGFVSHDLYL-------HGFFSASI 81
H +G++ L +TD ++ + ++ + G+ S L +G ASI
Sbjct: 35 HGWGNNELQNYTDSRANSALDGNGNLVITARQEADGGYTSARLTTQNKVQPQYGRVEASI 94
Query: 82 KLPADYTAGVVVAFYMSNGDMFEKNH-DEIDFEFLGNIRGKDWRIQTNIYGNGSTSIGRE 140
++P G+ AF+M D D + + + NI + + +++G G G E
Sbjct: 95 QIPRG--QGIWPAFWMLGADFPNTPWPDSGEIDIMENIGREPHLVHGSLHGPGY--FGGE 150
Query: 141 ERYNLWFDP-----SDDFHQYSILWTDSQIIFYIDGIPIREFKRTASMGGDFP-AKPMSL 194
+ P +D FH +++ W I + +DG+ + + + G + +P +
Sbjct: 151 PLTGSYMHPQGWSFADTFHTFAVDWRPGSITWSVDGVAYQTYTSADTRGNPWVFDQPFFM 210
Query: 195 YATIWDGSDW 204
+ G DW
Sbjct: 211 ILNVAVGGDW 220
>pdb|3AZX|A Chain A, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8
pdb|3AZX|B Chain B, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8
pdb|3AZY|A Chain A, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8
pdb|3AZY|B Chain B, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8
pdb|3AZY|C Chain C, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8
pdb|3AZY|D Chain D, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8
pdb|3AZZ|A Chain A, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8 In Complex With
Gluconolactone
pdb|3AZZ|B Chain B, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8 In Complex With
Gluconolactone
pdb|3AZZ|C Chain C, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8 In Complex With
Gluconolactone
pdb|3AZZ|D Chain D, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8 In Complex With
Gluconolactone
pdb|3B00|A Chain A, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8 In Complex With
Cetyltrimethylammonium Bromide
pdb|3B00|B Chain B, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8 In Complex With
Cetyltrimethylammonium Bromide
pdb|3B00|C Chain C, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8 In Complex With
Cetyltrimethylammonium Bromide
pdb|3B00|D Chain D, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8 In Complex With
Cetyltrimethylammonium Bromide
pdb|3B01|A Chain A, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8
pdb|3B01|B Chain B, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8
pdb|3B01|C Chain C, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8
pdb|3B01|D Chain D, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8
Length = 272
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 18/24 (75%)
Query: 148 DPSDDFHQYSILWTDSQIIFYIDG 171
D S+DFH +SI W + ++ +Y+DG
Sbjct: 173 DFSEDFHIFSIEWDEDEVEWYVDG 196
>pdb|4DFS|A Chain A, Structure Of The Catalytic Domain Of An
Endo-1,3-Beta-Glucanase (Laminarinase) From Thermotoga
Petrophila Rku-1
pdb|4DFS|B Chain B, Structure Of The Catalytic Domain Of An
Endo-1,3-Beta-Glucanase (Laminarinase) From Thermotoga
Petrophila Rku-1
Length = 267
Score = 28.9 bits (63), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 18/24 (75%)
Query: 148 DPSDDFHQYSILWTDSQIIFYIDG 171
D S+DFH +SI W + ++ +Y+DG
Sbjct: 181 DFSEDFHIFSIEWDEDEVEWYVDG 204
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.139 0.438
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,084,881
Number of Sequences: 62578
Number of extensions: 439496
Number of successful extensions: 882
Number of sequences better than 100.0: 38
Number of HSP's better than 100.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 818
Number of HSP's gapped (non-prelim): 44
length of query: 334
length of database: 14,973,337
effective HSP length: 99
effective length of query: 235
effective length of database: 8,778,115
effective search space: 2062857025
effective search space used: 2062857025
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)