Query 019909
Match_columns 334
No_of_seqs 315 out of 1745
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 05:30:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019909.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019909hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03161 Probable xyloglucan e 100.0 3.3E-80 7.2E-85 585.4 33.7 264 27-296 22-290 (291)
2 cd02176 GH16_XET Xyloglucan en 100.0 1.8E-79 4E-84 576.1 32.8 258 28-292 2-263 (263)
3 cd02183 GH16_fungal_CRH1_trans 100.0 3.2E-43 6.9E-48 320.2 25.5 177 40-233 14-202 (203)
4 cd02175 GH16_lichenase lichena 100.0 3.2E-37 6.9E-42 281.6 26.0 175 38-230 27-211 (212)
5 PF00722 Glyco_hydro_16: Glyco 100.0 3E-34 6.4E-39 254.6 19.2 177 34-228 3-185 (185)
6 cd00413 Glyco_hydrolase_16 gly 100.0 5.9E-33 1.3E-37 250.6 24.2 176 38-230 25-210 (210)
7 cd08023 GH16_laminarinase_like 100.0 2.3E-31 5.1E-36 245.5 22.9 181 39-230 34-235 (235)
8 cd02178 GH16_beta_agarase Beta 100.0 2.5E-31 5.4E-36 249.8 22.5 179 42-230 57-257 (258)
9 cd02177 GH16_kappa_carrageenas 100.0 1.2E-28 2.6E-33 233.2 22.0 176 42-230 43-268 (269)
10 cd02180 GH16_fungal_KRE6_gluca 100.0 1.2E-28 2.7E-33 235.7 20.1 188 37-230 35-294 (295)
11 cd02182 GH16_Strep_laminarinas 100.0 2.9E-28 6.3E-33 229.1 20.5 185 40-230 43-258 (259)
12 cd08024 GH16_CCF Coelomic cyto 99.9 3.8E-26 8.2E-31 222.0 19.6 140 64-205 102-279 (330)
13 cd02179 GH16_beta_GRP beta-1,3 99.9 1.5E-25 3.3E-30 217.0 18.5 137 64-202 99-268 (321)
14 COG2273 SKN1 Beta-glucanase/Be 99.9 3E-24 6.5E-29 210.0 19.1 156 40-205 76-242 (355)
15 PF06955 XET_C: Xyloglucan end 99.8 5.8E-19 1.3E-23 127.0 4.3 43 249-292 8-51 (51)
16 PF03935 SKN1: Beta-glucan syn 99.6 4.7E-15 1E-19 149.6 16.5 88 150-247 365-465 (504)
17 cd02181 GH16_fungal_Lam16A_glu 99.5 8.2E-13 1.8E-17 126.0 13.1 147 49-205 47-251 (293)
18 smart00560 LamGL LamG-like jel 88.8 13 0.00028 31.1 14.1 69 149-234 59-130 (133)
19 PF13385 Laminin_G_3: Concanav 87.9 1.4 3.1E-05 36.0 5.9 67 149-232 83-149 (157)
20 PF09264 Sial-lect-inser: Vibr 87.2 1.1 2.3E-05 40.8 4.8 28 151-178 92-121 (198)
21 PF10287 DUF2401: Putative TOS 83.9 5.2 0.00011 37.6 7.9 81 77-163 103-207 (235)
22 KOG1834 Calsyntenin [Extracell 82.0 8.4 0.00018 41.3 9.2 57 145-205 436-492 (952)
23 smart00210 TSPN Thrombospondin 80.0 35 0.00076 30.3 11.6 29 150-178 116-144 (184)
24 PF06439 DUF1080: Domain of Un 75.3 6.3 0.00014 34.2 5.3 32 149-180 125-156 (185)
25 cd00110 LamG Laminin G domain; 65.7 74 0.0016 26.0 16.1 86 73-177 20-106 (151)
26 cd00152 PTX Pentraxins are pla 54.8 80 0.0017 28.3 8.5 72 149-230 88-161 (201)
27 smart00159 PTX Pentraxin / C-r 54.6 88 0.0019 28.2 8.8 72 149-230 88-161 (206)
28 PHA02724 hydrophobic IMV membr 53.3 11 0.00025 27.2 2.1 20 1-20 1-20 (53)
29 PHA03047 IMV membrane receptor 53.1 12 0.00025 27.1 2.1 20 1-20 1-20 (53)
30 PF06269 DUF1029: Protein of u 50.5 13 0.00029 26.9 2.1 20 1-20 1-20 (53)
31 PF14099 Polysacc_lyase: Polys 48.8 2E+02 0.0044 25.8 10.6 73 145-229 146-224 (224)
32 PHA02679 ORF091 IMV membrane p 47.4 16 0.00035 26.4 2.1 19 1-19 1-19 (53)
33 PF02210 Laminin_G_2: Laminin 47.4 1.4E+02 0.003 23.4 9.8 74 150-230 53-126 (128)
34 smart00282 LamG Laminin G doma 44.8 92 0.002 25.3 6.7 29 150-178 61-89 (135)
35 PF11191 DUF2782: Protein of u 41.2 1.3E+02 0.0028 24.4 6.9 17 81-101 63-79 (105)
36 PF11131 PhrC_PhrF: Rap-phr ex 32.8 37 0.0008 22.7 1.9 12 9-20 3-14 (37)
37 PF11948 DUF3465: Protein of u 32.2 58 0.0012 28.0 3.5 24 42-65 34-57 (131)
38 PF10731 Anophelin: Thrombin i 27.5 59 0.0013 24.3 2.4 18 8-25 5-24 (65)
39 PF02973 Sialidase: Sialidase, 27.3 4.8E+02 0.01 23.8 13.5 133 72-233 32-176 (190)
40 PF13473 Cupredoxin_1: Cupredo 25.2 54 0.0012 26.1 2.1 24 39-63 31-54 (104)
41 PF12248 Methyltransf_FA: Farn 25.0 3.5E+02 0.0075 21.6 6.9 45 150-200 51-97 (102)
42 cd06526 metazoan_ACD Alpha-cry 24.6 1.1E+02 0.0024 23.3 3.7 44 40-86 18-61 (83)
43 cd06482 ACD_HspB10 Alpha cryst 21.2 1.6E+02 0.0034 23.2 4.0 47 40-86 19-65 (87)
44 PF09224 DUF1961: Domain of un 20.2 7.2E+02 0.016 23.3 9.5 59 151-229 159-218 (218)
No 1
>PLN03161 Probable xyloglucan endotransglucosylase/hydrolase protein; Provisional
Probab=100.00 E-value=3.3e-80 Score=585.40 Aligned_cols=264 Identities=33% Similarity=0.697 Sum_probs=240.5
Q ss_pred CCCCCcccCCcccccCCceEEeCCCcEEEEEEecCCCCeeeecceeEEEEEEEEEEeeCCCCCceEEEEEeecCCCCCCC
Q 019909 27 LPIVPFDEGYSHLFGHDNLVVHTDGKSVHLSLDERTGSGFVSHDLYLHGFFSASIKLPADYTAGVVVAFYMSNGDMFEKN 106 (334)
Q Consensus 27 ~~~~~f~~~~~~~w~~~nv~~~~~G~~l~L~ld~~~gs~i~Sk~~f~YG~~EariKlp~g~s~Gvv~AFwl~s~d~~~~~ 106 (334)
....+|+++|..+|+.+|+.+.++|..|+|+||+.+|++|+||+.|+||+||||||||+|+++|+||||||++.+ +.
T Consensus 22 ~~~~~f~~~~~~~w~~~~~~~~~~g~~l~L~ld~~sgs~~~Sk~~f~yGr~E~riKLp~G~saG~v~AFwl~s~~---~~ 98 (291)
T PLN03161 22 FVEADFSKSMYFTWGADHSSMLGNGDNLQLVLDQSSGSGIKSKRAFLFGSIEMLIKLVPGNSAGTVTAYYLSSTG---SR 98 (291)
T ss_pred cccccccccceeeEcCCcEEEeCCCCEEEEEEeCCccCcEEecceEEEEEEEEEEEeCCCCCCCeEEEEEecCCC---CC
Confidence 467789999999999999999888888999999999999999999999999999999998889999999999863 57
Q ss_pred CCeeeEEEcCCcCCCcceEEEeEEcCCCcCCCCceeEecCCCCCCCcEEEEEEEcCCeEEEEEcCeeEEEEeccccCCCC
Q 019909 107 HDEIDFEFLGNIRGKDWRIQTNIYGNGSTSIGREERYNLWFDPSDDFHQYSILWTDSQIIFYIDGIPIREFKRTASMGGD 186 (334)
Q Consensus 107 ~dEID~E~lG~~~g~p~~~qTNv~~~G~~~~~~e~~~~l~~dpt~dfHtY~i~Wtpd~I~fyVDG~~vr~~~~~~~~g~~ 186 (334)
+|||||||||+++++|+++|||+|.+|. +.+++++.++||++++||+|+|+|+|++|+|||||++||++++.+..|.+
T Consensus 99 ~dEIDiEfLG~~~g~~~~vqtN~y~~g~--g~re~~~~l~fDpt~dFHtYsI~Wtp~~I~wyVDG~~iRt~~~~~~~g~~ 176 (291)
T PLN03161 99 HDEIDFEFLGNVSGQPYTIHTNIYTQGN--GSREQQFRPWFDPTADFHNYTIHWNPSEVVWYVDGTPIRVFRNYENEGIA 176 (291)
T ss_pred CCeEEEEecCCCCCCceEEEeceEeCCc--CCcceeccccCCCccCcEEEEEEEchhhEEEEECCEEEEEEEcccccCCc
Confidence 9999999999999999999999999887 67898999999999999999999999999999999999999987777788
Q ss_pred CC-CCcceEEEEEeeCCCCCCCCCccccCCCCCCEEEEEcEEEEeeeecCCCCCCCCcccCC---CCCCCCCCCCCCHHH
Q 019909 187 FP-AKPMSLYATIWDGSDWATNGGKYRVNYKYAPYVTEFSDFVLHGCSFDPIEQTSSKCDIT---ESSKVSIPTGVSPSQ 262 (334)
Q Consensus 187 ~P-~~Pm~l~lniW~GgdWat~GG~~~~d~s~aPf~a~~~~~~v~~c~~~~~~~~~~~C~~~---~~~~~~~~~~l~~~q 262 (334)
|| ++||+|++|||+|++|||+||++||||+++||+|.|++|+|+||.+++... ...|..+ .|+....++.|+++|
T Consensus 177 yP~~~pM~i~~siW~g~~wAt~gG~~kidw~~aPf~a~~~~f~~~~C~~~~~~~-~~~c~~~~~~~~~~~~~~~~l~~~~ 255 (291)
T PLN03161 177 YPNKQGMRVYSSLWNADNWATQGGRVKIDWTLAPFVARGRRFRARACKWNGPVS-IKQCADPTPSNWWTSPSYSQLTNAQ 255 (291)
T ss_pred CCCccceEEEEeeecCCCcccCCCceeccCCcCCeeEEeeeEEEEeeccCCCCC-ccccCCCCccccccCccccCCCHHH
Confidence 99 579999999999999999999999999999999999999999998764311 2368642 244445688999999
Q ss_pred HHHHHHHhhcCeEEeccccCCcCCC-CCCCccCCh
Q 019909 263 RIKMENFRRKHMTYSYCYDQIRYKV-PPFECVINP 296 (334)
Q Consensus 263 ~~~~~~vr~~~m~YdYC~D~~R~p~-~p~EC~~~~ 296 (334)
+++|+|||+||||||||+|++|||+ +||||.+++
T Consensus 256 ~~~~~~v~~~~m~Y~YC~D~~R~~~~~p~EC~~~~ 290 (291)
T PLN03161 256 LTQMKKVRDNFMIYDYCKDTKRFNGVMPPECFKPQ 290 (291)
T ss_pred HHHHHHHHhCcEEEeccCCCCcCCCCcCcccCCCc
Confidence 9999999999999999999999998 899998764
No 2
>cd02176 GH16_XET Xyloglucan endotransglycosylase, member of glycosyl hydrolase family 16. Xyloglucan endotransglycosylases (XETs) cleave and religate xyloglucan polymers in plant cell walls via a transglycosylation mechanism. Xyloglucan is a soluble hemicellulose with a backbone of beta-1,4-linked glucose units, partially substituted with alpha-1,6-linked xylopyranose branches. It binds noncovalently to cellulose, cross-linking the adjacent cellulose microfibrils, giving it a key structural role as a matrix polymer. Therefore, XET plays an important role in all plant processes that require cell wall remodeling.
Probab=100.00 E-value=1.8e-79 Score=576.07 Aligned_cols=258 Identities=50% Similarity=0.945 Sum_probs=238.0
Q ss_pred CCCCcccCCcccccCCceEEeCCCcEEEEEEecCCCCeeeecceeEEEEEEEEEEeeCCCCCceEEEEEeecCCCCCCCC
Q 019909 28 PIVPFDEGYSHLFGHDNLVVHTDGKSVHLSLDERTGSGFVSHDLYLHGFFSASIKLPADYTAGVVVAFYMSNGDMFEKNH 107 (334)
Q Consensus 28 ~~~~f~~~~~~~w~~~nv~~~~~G~~l~L~ld~~~gs~i~Sk~~f~YG~~EariKlp~g~s~Gvv~AFwl~s~d~~~~~~ 107 (334)
...+|.++|..+|+++||+++++|+.|+|+||+.+|++|.|+..|+||+||||||||+|+++|+||||||++++ ++.+
T Consensus 2 ~~~~f~~~~~~~w~~~~~~~~~~g~~~~L~ld~~s~~~i~Sk~~f~YG~~E~riKlp~g~s~G~~pAFwl~~~~--wp~~ 79 (263)
T cd02176 2 VAASFDENFFVTWGPDHIRVSNDGTSVQLTLDQSSGSGFKSKNKYLFGFFSMRIKLPPGDSAGTVTAFYLSSQG--PDNH 79 (263)
T ss_pred CcCCccccceeeEcCCcEEEeCCCCEEEEEEcCCCCccEEEccEEEEEEEEEEEEeCCCCCCCeEEEEEECCCC--CCCC
Confidence 35679999999999999999988889999999999999999999999999999999998889999999999986 7899
Q ss_pred CeeeEEEcCCcCCCcceEEEeEEcCCCcCCCCceeEecCCCCCCCcEEEEEEEcCCeEEEEEcCeeEEEEeccccCCCCC
Q 019909 108 DEIDFEFLGNIRGKDWRIQTNIYGNGSTSIGREERYNLWFDPSDDFHQYSILWTDSQIIFYIDGIPIREFKRTASMGGDF 187 (334)
Q Consensus 108 dEID~E~lG~~~g~p~~~qTNv~~~G~~~~~~e~~~~l~~dpt~dfHtY~i~Wtpd~I~fyVDG~~vr~~~~~~~~g~~~ 187 (334)
+|||||+||+++|+|+++|||+|.+|. +++++++.+++||+++||+|+|+|+|++|+|||||++||++++.+..|.+|
T Consensus 80 ~EID~E~lGn~~g~~~~~qtnv~~~g~--g~r~~~~~l~fdpt~dFHtY~i~Wtp~~I~fyVDG~~vr~~~~~~~~g~~~ 157 (263)
T cd02176 80 DEIDFEFLGNVTGQPYTLQTNVFANGV--GGREQRIYLWFDPTADFHTYSILWNPHQIVFYVDDVPIRVFKNNEALGVPY 157 (263)
T ss_pred CeEEEEEecccCCCceEEEEEEeCCCC--CCCceeeecCCCCCCCeEEEEEEEccceEEEEECCEEEEEEecccccCCCC
Confidence 999999999999999999999999887 568889999999999999999999999999999999999999987777889
Q ss_pred CC-CcceEEEEEeeCCCCCCCCCccccCCCCCCEEEEEcEEEEeeeecCCCCCCCCcccC---CCCCCCCCCCCCCHHHH
Q 019909 188 PA-KPMSLYATIWDGSDWATNGGKYRVNYKYAPYVTEFSDFVLHGCSFDPIEQTSSKCDI---TESSKVSIPTGVSPSQR 263 (334)
Q Consensus 188 P~-~Pm~l~lniW~GgdWat~GG~~~~d~s~aPf~a~~~~~~v~~c~~~~~~~~~~~C~~---~~~~~~~~~~~l~~~q~ 263 (334)
|. +||+|++|||+||+|||+||++++||+++||+|.|++|+|.+|.+++.. ..|.. ..|+....+++|+++|+
T Consensus 158 P~~~Pm~l~~niW~g~~WAt~gG~~~~d~~~aPf~a~~~~~~~~~c~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~~~ 234 (263)
T cd02176 158 PSSQPMGVYASIWDGSDWATQGGRVKIDWSYAPFVASYRDFKLDGCVVDPGD---SFSSCSCTEDWWNGSTYQQLSANQQ 234 (263)
T ss_pred CccceEEEEEeeEcCCCcccCCCcccccCCCCCeeEEEeeEEEeeeecCCCC---ccccCCCccccccccccccCCHHHH
Confidence 94 9999999999999999999999999999999999999999999986532 24433 22444556889999999
Q ss_pred HHHHHHhhcCeEEeccccCCcCCCCCCCc
Q 019909 264 IKMENFRRKHMTYSYCYDQIRYKVPPFEC 292 (334)
Q Consensus 264 ~~~~~vr~~~m~YdYC~D~~R~p~~p~EC 292 (334)
++|+|||+||||||||+|++|||.+||||
T Consensus 235 ~~~~~~~~~~~~y~yC~d~~r~~~~p~ec 263 (263)
T cd02176 235 RAMEWVRRNYMVYDYCDDRKRYPVPPPEC 263 (263)
T ss_pred HHHHHHHHCCEEEecCCCCCcCCCCcCCC
Confidence 99999999999999999999999999999
No 3
>cd02183 GH16_fungal_CRH1_transglycosylase glycosylphosphatidylinositol-glucanosyltransferase. Group of fungal GH16 members related to Saccharomyces cerevisiae Crh1p. Chr1p and Crh2p are transglycosylases that are required for the linkage of chitin to beta(1-3)glucose branches of beta(1-6)glucan, an important step in the assembly of new cell wall. Both have been shown to be glycosylphosphatidylinositol (GPI)-anchored. A third homologous protein, Crr1p, functions in the formation of the spore wall. They belongs to the family 16 of glycosyl hydrolases that includes lichenase, xyloglucan endotransglycosylase (XET), beta-agarase, kappa-carrageenase, endo-beta-1,3-glucanase, endo-beta-1,3-1,4-glucanase, and endo-beta-galactosidase, all of which have a conserved jelly roll fold with a deep active site channel harboring the catalytic residues.
Probab=100.00 E-value=3.2e-43 Score=320.24 Aligned_cols=177 Identities=28% Similarity=0.552 Sum_probs=154.2
Q ss_pred ccCCceEEeCCCcEEEEEEecC-CCCeeeecceeEEEEEEEEEEeeCCCCCceEEEEEeecCCCCCCCCCeeeEEEcCCc
Q 019909 40 FGHDNLVVHTDGKSVHLSLDER-TGSGFVSHDLYLHGFFSASIKLPADYTAGVVVAFYMSNGDMFEKNHDEIDFEFLGNI 118 (334)
Q Consensus 40 w~~~nv~~~~~G~~l~L~ld~~-~gs~i~Sk~~f~YG~~EariKlp~g~s~Gvv~AFwl~s~d~~~~~~dEID~E~lG~~ 118 (334)
...++|.+.++ .|.|+|++. ++++|.|++.|+||+||||||+|.+ +|+||||||+++ .++|||||++|++
T Consensus 14 ~~~~~~~~~~~--~~~l~~~~~~~~~~i~s~~~f~YG~~EaR~Klp~g--~G~wpAfWl~~~-----~~gEIDIE~~G~~ 84 (203)
T cd02183 14 VTSGTVDYDDD--GASLTIPKRGDGPTISSTFYIFYGKVEVTMKAAPG--QGIVSSFVLQSD-----DLDEIDWEWVGGD 84 (203)
T ss_pred ecCCcEeECCC--eEEEEEcCCCCCCeEEeccEEEeEEEEEEEEecCC--CeEEEEEEEECC-----CCCEEEEEecCCC
Confidence 35688888744 589999988 7899999999999999999999997 899999999987 3699999999964
Q ss_pred CCCcceEEEeEEcCCCc-CCCCceeEecCCCCCCCcEEEEEEEcCCeEEEEEcCeeEEEEecccc-CCCCCCCCcceEEE
Q 019909 119 RGKDWRIQTNIYGNGST-SIGREERYNLWFDPSDDFHQYSILWTDSQIIFYIDGIPIREFKRTAS-MGGDFPAKPMSLYA 196 (334)
Q Consensus 119 ~g~p~~~qTNv~~~G~~-~~~~e~~~~l~~dpt~dfHtY~i~Wtpd~I~fyVDG~~vr~~~~~~~-~g~~~P~~Pm~l~l 196 (334)
+..+|+|+|.+|.. ...+.+.+.++++++++||+|+|+|+|+.|+|||||++++++++.+. .+..||++||+|+|
T Consensus 85 ---~~~~~tn~~~~g~~~~~~~~~~~~~~~~~~~dFHtY~veWtpd~I~~yVDG~~v~~~~~~~~~~~~~~p~~P~~l~l 161 (203)
T cd02183 85 ---LTQVQTNYFGKGNTTTYDRGGYHPVPNPQTEEFHTYTIDWTKDRITWYIDGKVVRTLTKADTTGGYGYPQTPMRLQI 161 (203)
T ss_pred ---CCEEEeEEECCCCCCCCCCceEeeCCCCCCcCcEEEEEEEecCEEEEEECCEEEEEEehhhcccCCCCCCCCcEEEE
Confidence 56899999987653 23455677788888899999999999999999999999999997543 34679999999999
Q ss_pred EEeeCCC---------CCCCCCccccCCCCCCEEEEEcEEEEeeee
Q 019909 197 TIWDGSD---------WATNGGKYRVNYKYAPYVTEFSDFVLHGCS 233 (334)
Q Consensus 197 niW~Ggd---------Wat~GG~~~~d~s~aPf~a~~~~~~v~~c~ 233 (334)
|+|+||+ || || ++||+.+||.|.|++|+|+ |.
T Consensus 162 n~W~gg~~~~~~g~~~Wa--Gg--~~d~~~~P~~~~vd~v~v~-~~ 202 (203)
T cd02183 162 GIWAGGDPSNAPGTIEWA--GG--ETDYDKGPFTMYVKSVTVT-DY 202 (203)
T ss_pred EEecCCCccccCCcccCC--CC--ccCCCCCCEEEEEEEEEEE-eC
Confidence 9999985 99 88 5899999999999999998 64
No 4
>cd02175 GH16_lichenase lichenase, member of glycosyl hydrolase family 16. Lichenase, also known as 1,3-1,4-beta-glucanase, is a member of glycosyl hydrolase family 16, that specifically cleaves 1,4-beta-D-glucosidic bonds in mixed-linked beta glucans that also contain 1,3-beta-D-glucosidic linkages. Natural substrates of beta-glucanase are beta-glucans from grain endosperm cell walls or lichenan from the Islandic moss, Cetraria islandica. This protein is found not only in bacteria but also in anaerobic fungi. This domain includes two seven-stranded antiparallel beta-sheets that are adjacent to one another forming a compact, jellyroll beta-sandwich structure.
Probab=100.00 E-value=3.2e-37 Score=281.63 Aligned_cols=175 Identities=30% Similarity=0.562 Sum_probs=147.4
Q ss_pred ccccCCceEEeCCCcEEEEEEecC-------CCCeeeecceeEEEEEEEEEEeeCCCCCceEEEEEeecCCCCCCCCCee
Q 019909 38 HLFGHDNLVVHTDGKSVHLSLDER-------TGSGFVSHDLYLHGFFSASIKLPADYTAGVVVAFYMSNGDMFEKNHDEI 110 (334)
Q Consensus 38 ~~w~~~nv~~~~~G~~l~L~ld~~-------~gs~i~Sk~~f~YG~~EariKlp~g~s~Gvv~AFwl~s~d~~~~~~dEI 110 (334)
-.|.++||.+. +| .|.|++.+. ++++|.|+++|+||+||||||+|.+ +|+|+||||++.+..+..++||
T Consensus 27 ~~~~~~nv~v~-~g-~L~l~~~~~~~~~~~~tsg~i~S~~~f~yG~~ear~k~~~~--~G~~~Afwl~~~~~~~~~~~EI 102 (212)
T cd02175 27 CTWSADNVEFS-DG-GLALTLTNDTYGEKPYACGEYRTRGFYGYGRYEVRMKPAKG--SGVVSSFFTYTGPYDGDPHDEI 102 (212)
T ss_pred eeEccccEEEE-CC-eEEEEEeCCcCCCCccccceEEECceEEeeEEEEEEEcCCC--CeEEEEEEEEecCCCCCCCCEE
Confidence 35778999997 44 588888654 3688999999999999999999997 9999999999865434567999
Q ss_pred eEEEcCCcCCCcceEEEeEEcCCCcCCCCceeEecCCCCCCCcEEEEEEEcCCeEEEEEcCeeEEEEeccccCCCCCCCC
Q 019909 111 DFEFLGNIRGKDWRIQTNIYGNGSTSIGREERYNLWFDPSDDFHQYSILWTDSQIIFYIDGIPIREFKRTASMGGDFPAK 190 (334)
Q Consensus 111 D~E~lG~~~g~p~~~qTNv~~~G~~~~~~e~~~~l~~dpt~dfHtY~i~Wtpd~I~fyVDG~~vr~~~~~~~~g~~~P~~ 190 (334)
|||++|++. ..+++|+|.++. ..+...+.++++++++||+|+|+|+|++|+|||||+++++++..+ ..+|++
T Consensus 103 DiE~~g~~~---~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~H~Y~v~W~~~~i~~yvDg~~v~~~~~~~---~~~p~~ 174 (212)
T cd02175 103 DIEFLGKDT---TKVQFNYYTNGV--GGHEKLIDLGFDASEGFHTYAFEWEPDSIRWYVDGELVHEATATD---PNIPDT 174 (212)
T ss_pred EEEEccCCC---CEeEEEEECCCC--CCCceEEeCCCCcccccEEEEEEEeCCEEEEEECCEEEEEEcCcc---CCCCCC
Confidence 999999754 468899988765 345556677889999999999999999999999999999998753 368999
Q ss_pred cceEEEEEeeCC---CCCCCCCccccCCCCCCEEEEEcEEEEe
Q 019909 191 PMSLYATIWDGS---DWATNGGKYRVNYKYAPYVTEFSDFVLH 230 (334)
Q Consensus 191 Pm~l~lniW~Gg---dWat~GG~~~~d~s~aPf~a~~~~~~v~ 230 (334)
||+|+||+|.|+ +|+ | ++|. .+|++|+|++||+.
T Consensus 175 p~~i~~n~w~~~~~~~W~---G--~~~~-~~p~~~~vd~vr~~ 211 (212)
T cd02175 175 PGKIMMNLWPGDGVDDWL---G--PFDG-GTPLTAEYDWVSYT 211 (212)
T ss_pred CcEEEEEEEcCCCCCCcC---C--cCCC-CCCeEEEEEEEEEe
Confidence 999999999985 598 4 3566 89999999999985
No 5
>PF00722 Glyco_hydro_16: Glycosyl hydrolases family 16; InterPro: IPR000757 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 16 GH16 from CAZY comprises enzymes with a number of known activities; lichenase (3.2.1.73 from EC); xyloglucan xyloglucosyltransferase (2.4.1.207 from EC); agarase (3.2.1.81 from EC); kappa-carrageenase (3.2.1.83 from EC); endo-beta-1,3-glucanase (3.2.1.39 from EC); endo-beta-1,3-1,4-glucanase (3.2.1.6 from EC); endo-beta-galactosidase (3.2.1.103 from EC).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3DGT_A 2CL2_A 2WLQ_A 2WNE_A 2W39_A 2W52_A 3ILN_A 4DFS_A 1UMZ_A 1UN1_B ....
Probab=100.00 E-value=3e-34 Score=254.58 Aligned_cols=177 Identities=36% Similarity=0.579 Sum_probs=149.2
Q ss_pred cCCcccccCCceEEeCCCcEEEEEEec-----CCCCeeeecceeEEEEEEEEEEeeCCCCCceEEEEEeecCCCCCCCCC
Q 019909 34 EGYSHLFGHDNLVVHTDGKSVHLSLDE-----RTGSGFVSHDLYLHGFFSASIKLPADYTAGVVVAFYMSNGDMFEKNHD 108 (334)
Q Consensus 34 ~~~~~~w~~~nv~~~~~G~~l~L~ld~-----~~gs~i~Sk~~f~YG~~EariKlp~g~s~Gvv~AFwl~s~d~~~~~~d 108 (334)
+.+..+|.++||.+.++ ..|.|++++ .++++|.|+..++||+||+|||++.+ .|+|+||||.+.+. ++.++
T Consensus 3 ~~~~~~~~~~nv~~~~g-~~L~L~~~~~~~~~~~sg~i~s~~~~~yG~~ear~k~~~~--~G~~~afwl~~~~~-~~~~~ 78 (185)
T PF00722_consen 3 DQYNCTWSPDNVTVEDG-GNLVLRADKEPGKPYTSGEIQSKFSFKYGRFEARIKAPPG--PGVWPAFWLTGADG-WPDGG 78 (185)
T ss_dssp CTEEEEETCCGEEEETT-SEEEEEEEEEETEEEEEEEEEESSEBSSEEEEEEEECSCS--TTEEEEEEEETTGS-TTTTE
T ss_pred CceEEeeCCCcEEEcCC-CEEEEEEEecccCceEeCEEEEcceeECcEEEEEEEecCC--CceEeccccccccc-ccchh
Confidence 56778899999999755 479999987 56889999999999999999998886 99999999976444 78999
Q ss_pred eeeEEEcCCcCCCcceEEEeEEcCCCcCCCCceeEecCCCCCCCcEEEEEEEcCCeEEEEEcCeeEEEEeccccCCCCCC
Q 019909 109 EIDFEFLGNIRGKDWRIQTNIYGNGSTSIGREERYNLWFDPSDDFHQYSILWTDSQIIFYIDGIPIREFKRTASMGGDFP 188 (334)
Q Consensus 109 EID~E~lG~~~g~p~~~qTNv~~~G~~~~~~e~~~~l~~dpt~dfHtY~i~Wtpd~I~fyVDG~~vr~~~~~~~~g~~~P 188 (334)
|||||++|+++. .+++|+|..+.........+.+..++.++||+|+|+|+|++|+|||||++++++......+..||
T Consensus 79 EIDiE~~g~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~y~~~W~~~~i~fyiDg~~~~~~~~~~~~~~~~P 155 (185)
T PF00722_consen 79 EIDIEFLGNDPT---QVQTNVHWNGDGDSNWEKRVPLGFDPSTDFHTYGFEWTPDRIRFYIDGKLVRTVTNSDVPGSPYP 155 (185)
T ss_dssp EEEEEEETTSTT---EEEEEEEBTTBSCEEEEEEEETSSTTTTSEEEEEEEEETTEEEEEETTEEEEEEESSGSTTTCSS
T ss_pred hhhhhhcccccc---ceeeeeeecccCCcccceeeccccCcCCCcEEEEEEEecCeEEEEECCEEEEEEeccccccccCc
Confidence 999999998654 59999998877421124567778899999999999999999999999999999998765444689
Q ss_pred C-CcceEEEEEeeCCCCCCCCCccccCCCCCCEEEEEcEEE
Q 019909 189 A-KPMSLYATIWDGSDWATNGGKYRVNYKYAPYVTEFSDFV 228 (334)
Q Consensus 189 ~-~Pm~l~lniW~GgdWat~GG~~~~d~s~aPf~a~~~~~~ 228 (334)
. .||+|.+++|.+++|++..| .|+|||||
T Consensus 156 ~~~~~~~~~~~w~~~~~~~~~~-----------~m~vDwvr 185 (185)
T PF00722_consen 156 FSTPMNLALGLWPGGDWAGPAG-----------EMEVDWVR 185 (185)
T ss_dssp EEEEEEEEEEECEBTTTHSSEC-----------EEEEEEEE
T ss_pred ccceeEEEEccccCCCCCCCCC-----------EEEEEeEC
Confidence 6 99999999999999985444 57777775
No 6
>cd00413 Glyco_hydrolase_16 glycosyl hydrolase family 16. The O-Glycosyl hydrolases are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A glycosyl hydrolase classification system based on sequence similarity has led to the definition of more than 95 different families inlcuding glycosyl hydrolase family 16. Family 16 includes lichenase, xyloglucan endotransglycosylase (XET), beta-agarase, kappa-carrageenase, endo-beta-1,3-glucanase, endo-beta-1,3-1,4-glucanase, and endo-beta-galactosidase, all of which have a conserved jelly roll fold with a deep active site channel harboring the catalytic residues.
Probab=100.00 E-value=5.9e-33 Score=250.61 Aligned_cols=176 Identities=31% Similarity=0.524 Sum_probs=146.0
Q ss_pred ccccCCceEEeCCCcEEEEEEecC------CCCeeee-cceeEEEEEEEEEEeeCCCCCceEEEEEeecCCCCCCCCCee
Q 019909 38 HLFGHDNLVVHTDGKSVHLSLDER------TGSGFVS-HDLYLHGFFSASIKLPADYTAGVVVAFYMSNGDMFEKNHDEI 110 (334)
Q Consensus 38 ~~w~~~nv~~~~~G~~l~L~ld~~------~gs~i~S-k~~f~YG~~EariKlp~g~s~Gvv~AFwl~s~d~~~~~~dEI 110 (334)
..|.++||.+.++| .|.|++.+. ++++|.| ++.|+||+||+|||++.+ .|+|+||||++.+..++..+||
T Consensus 25 ~~~~~~nv~~~~~G-~L~l~~~~~~~~~~~~sg~i~s~~~~~~yG~~ear~k~~~~--~G~~~afw~~~~~~~~~~~~EI 101 (210)
T cd00413 25 MTNSPNNVYVENDG-GLTLRTDRDQTDGPYSSAEIDSQKNNYTYGYYEARAKLAGG--PGAVSAFWTYSDDDDPPDGGEI 101 (210)
T ss_pred EEECccCEEEeCCC-eEEEEEEecCCCCceEeEEEEeCcceEeeEEEEEEEEcCCC--CceEEEEEEeCCCCCCCCCCeE
Confidence 46789999998656 688888654 4678999 999999999999999997 9999999999987545789999
Q ss_pred eEEEcCCcCCCcceEEEeEEcCCCcC---CCCceeEecCCCCCCCcEEEEEEEcCCeEEEEEcCeeEEEEeccccCCCCC
Q 019909 111 DFEFLGNIRGKDWRIQTNIYGNGSTS---IGREERYNLWFDPSDDFHQYSILWTDSQIIFYIDGIPIREFKRTASMGGDF 187 (334)
Q Consensus 111 D~E~lG~~~g~p~~~qTNv~~~G~~~---~~~e~~~~l~~dpt~dfHtY~i~Wtpd~I~fyVDG~~vr~~~~~~~~g~~~ 187 (334)
|||++|++ +..+++++|..+... ......+.+++++.++||+|+|+|+|+.|+|||||+++++++.. +
T Consensus 102 DiE~~~~~---~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~H~Y~~~W~~~~i~~yvDG~~~~~~~~~------~ 172 (210)
T cd00413 102 DIEFLGRD---PTTVQTNVHWPGYGAGATTGEEKSVHLPFDPADDFHTYRVDWTPGEITFYVDGVLVATITNQ------V 172 (210)
T ss_pred EEEecccC---CCeEEEEEecCCCCcccccccceeecCCCCCccCeEEEEEEEeCCEEEEEECCEEEEEECCC------C
Confidence 99999975 346888888665421 23344556667788999999999999999999999999999752 7
Q ss_pred CCCcceEEEEEeeCCCCCCCCCccccCCCCCCEEEEEcEEEEe
Q 019909 188 PAKPMSLYATIWDGSDWATNGGKYRVNYKYAPYVTEFSDFVLH 230 (334)
Q Consensus 188 P~~Pm~l~lniW~GgdWat~GG~~~~d~s~aPf~a~~~~~~v~ 230 (334)
|++||+|+||+|.+++|+ +. .+....|..|.|++|+|.
T Consensus 173 p~~p~~i~ln~~~~~~~~--~~---~~~~~~~~~~~Vd~vrvy 210 (210)
T cd00413 173 PDDPMNIILNLWSDGGWW--WG---GPPPGAPAYMEIDWVRVY 210 (210)
T ss_pred CCCCcEEEEEEEECCCCc--cc---CCCCCCCcEEEEEEEEEC
Confidence 899999999999999987 32 345688999999999973
No 7
>cd08023 GH16_laminarinase_like Laminarinase, member of the glycosyl hydrolase family 16. Laminarinase, also known as glucan endo-1,3-beta-D-glucosidase, is a glycosyl hydrolase family 16 member that hydrolyzes 1,3-beta-D-glucosidic linkages in 1,3-beta-D-glucans such as laminarins, curdlans, paramylons, and pachymans, with very limited action on mixed-link (1,3-1,4-)-beta-D-glucans.
Probab=100.00 E-value=2.3e-31 Score=245.53 Aligned_cols=181 Identities=25% Similarity=0.436 Sum_probs=142.5
Q ss_pred cccCCceEEeCCCcEEEEEEecCC----------CCeeee--cceeEEEEEEEEEEeeCCCCCceEEEEEeecCCCC---
Q 019909 39 LFGHDNLVVHTDGKSVHLSLDERT----------GSGFVS--HDLYLHGFFSASIKLPADYTAGVVVAFYMSNGDMF--- 103 (334)
Q Consensus 39 ~w~~~nv~~~~~G~~l~L~ld~~~----------gs~i~S--k~~f~YG~~EariKlp~g~s~Gvv~AFwl~s~d~~--- 103 (334)
.+.++||.+. +| .|.|+..+.+ ++.|.| +..|+||+||||||+|.+ .|+||||||++++..
T Consensus 34 ~~~~~nv~v~-~G-~L~i~~~~~~~~~~~~~~~~sg~i~S~~~~~~~yG~~E~r~k~~~~--~G~~pafWl~~~~~~~~~ 109 (235)
T cd08023 34 TYRPENAYVE-DG-NLVITARKEPDKGGDGYPYTSGRITTKGKFSFTYGRVEARAKLPKG--QGTWPAFWMLGENIKYVG 109 (235)
T ss_pred eCCCCCeEEE-CC-EEEEEEEECCCCCCCcccEEEEEEEECCCcceeCCEEEEEEEccCC--CCceeEEEEcCCCCCCCC
Confidence 4677899886 45 6777765432 457888 778999999999999997 999999999998643
Q ss_pred CCCCCeee-EEEcCCcCCCcceEEEeEEcCCCc--CCCCceeEecCC-CCCCCcEEEEEEEcCCeEEEEEcCeeEEEEec
Q 019909 104 EKNHDEID-FEFLGNIRGKDWRIQTNIYGNGST--SIGREERYNLWF-DPSDDFHQYSILWTDSQIIFYIDGIPIREFKR 179 (334)
Q Consensus 104 ~~~~dEID-~E~lG~~~g~p~~~qTNv~~~G~~--~~~~e~~~~l~~-dpt~dfHtY~i~Wtpd~I~fyVDG~~vr~~~~ 179 (334)
++..+||| ||++|+. +..+++++|..+.. .......+.+.. +..++||+|+|+|+|++|+|||||++|+++++
T Consensus 110 w~~~~EIDI~E~~g~~---~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~fHtY~~~W~p~~i~~yvDG~~v~~~~~ 186 (235)
T cd08023 110 WPASGEIDIMEYVGNE---PNTVYGTLHGGATNDGNNGSGGSYTLPTDDLSDDFHTYAVEWTPDKITFYVDGKLYFTYTN 186 (235)
T ss_pred CCCCCcceeEecCCCC---CCeEEEEEECCCCCCCCCcccccEECCCCCcCCCcEEEEEEEECCEEEEEECCEEEEEEcc
Confidence 57889999 6999985 34788888876642 123344555554 78999999999999999999999999999997
Q ss_pred cccCC-CCCC-CCcceEEEEEeeCCCCCCCCCccccCCCCCCEEEEEcEEEEe
Q 019909 180 TASMG-GDFP-AKPMSLYATIWDGSDWATNGGKYRVNYKYAPYVTEFSDFVLH 230 (334)
Q Consensus 180 ~~~~g-~~~P-~~Pm~l~lniW~GgdWat~GG~~~~d~s~aPf~a~~~~~~v~ 230 (334)
....+ ..+| ++||+|+||+|++++|+ |. ...-...|..|.|++|||.
T Consensus 187 ~~~~~~~~~~~~~p~~liln~~~gg~w~---g~-~~~~~~~p~~~~VDyVrvy 235 (235)
T cd08023 187 PNTDNGGQWPFDQPFYLILNLAVGGNWP---GP-PDDDTPFPATMEVDYVRVY 235 (235)
T ss_pred cccCCcccCCCCCCcEEEEEEEEcCCCC---CC-CCCCCCCCCEEEEEEEEEC
Confidence 64321 1234 89999999999999998 42 1344578899999999984
No 8
>cd02178 GH16_beta_agarase Beta-agarase, member of glycosyl hydrolase family 16. Beta-agarase is a glycosyl hydrolase family 16 (GH16) member that hydrolyzes the internal beta-1,4-linkage of agarose, a hydrophilic polysaccharide found in the cell wall of Rhodophyceaea, marine red algae. Agarose is a linear chain of galactose units linked by alternating L-alpha-1,3- and D-beta-1,4-linkages that are additionally modified by a 3,6-anhydro-bridge. Agarose forms thermo-reversible gels that are widely used in the food industry or as a laboratory medium. While beta-agarases are also found in two other families derived from the sequence-based classification of glycosyl hydrolases (GH50, and GH86) the GH16 members are most abundant. This domain adopts a curved beta-sandwich conformation, with a tunnel-shaped active site cavity, referred to as a jellyroll fold.
Probab=100.00 E-value=2.5e-31 Score=249.79 Aligned_cols=179 Identities=22% Similarity=0.278 Sum_probs=134.2
Q ss_pred CCceEEeCCCcEEEEEEecCC-----------CCeeeecceeEEEEEEEEEEeeCCCCCceEEEEEeecCCCCCCCCCee
Q 019909 42 HDNLVVHTDGKSVHLSLDERT-----------GSGFVSHDLYLHGFFSASIKLPADYTAGVVVAFYMSNGDMFEKNHDEI 110 (334)
Q Consensus 42 ~~nv~~~~~G~~l~L~ld~~~-----------gs~i~Sk~~f~YG~~EariKlp~g~s~Gvv~AFwl~s~d~~~~~~dEI 110 (334)
++||.+. +| .|.|+..+.. ++.|.|+..|+||+||||||+|.+ . ++|||||++.+ ++.++||
T Consensus 57 ~~nv~v~-~G-~L~i~a~~~~~~~~~~~~~~tsg~i~t~~~~~YG~~EaR~K~p~~--~-~~pAfW~~~~~--~~~~gEI 129 (258)
T cd02178 57 ADNVSVE-DG-NLVLSATRHPGTELGNGYKVTTGSITSKEKVKYGYFEARAKASNL--P-MSSAFWLLSDT--KDSTTEI 129 (258)
T ss_pred cCCeEEE-CC-EEEEEEEcCCCCcCCCCccEEEEEEEeCCceEEEEEEEEEEcCCC--C-ccceEEEccCC--CCCCCcE
Confidence 5678775 55 6888876543 467899999999999999999985 4 57999999986 5689999
Q ss_pred e-EEEcCCcC--CCcceEEEeEEcCCC--cCC-CC---ceeEecCCCCCCCcEEEEEEEc-CCeEEEEEcCeeEEEEecc
Q 019909 111 D-FEFLGNIR--GKDWRIQTNIYGNGS--TSI-GR---EERYNLWFDPSDDFHQYSILWT-DSQIIFYIDGIPIREFKRT 180 (334)
Q Consensus 111 D-~E~lG~~~--g~p~~~qTNv~~~G~--~~~-~~---e~~~~l~~dpt~dfHtY~i~Wt-pd~I~fyVDG~~vr~~~~~ 180 (334)
| ||++|++. ..+..+++++|..+. ..+ .+ ...+...++.+++||+|+|+|+ |++|+|||||++++++++.
T Consensus 130 DI~E~~g~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~fHtY~veW~~p~~i~fyvDG~~~~~~~~~ 209 (258)
T cd02178 130 DILEHYGGDREEWFATRMNSNTHVFIRDPEQDYQPKDDGSWYYNPTELADDFHVYGVYWKDPDTIRFYIDGVLVRTVENS 209 (258)
T ss_pred EhhhccCCCCCccccceeeeeEEEccCCCCCCccccccceeecCCCccccCeEEEEEEEcCCCeEEEEECCEEEEEEcCc
Confidence 9 79999763 224578888763222 111 11 2234556677899999999999 9999999999999999875
Q ss_pred ccCCCCCC-CCcceEEEEEeeCCCCCCCCCccccCCCCCCEEEEEcEEEEe
Q 019909 181 ASMGGDFP-AKPMSLYATIWDGSDWATNGGKYRVNYKYAPYVTEFSDFVLH 230 (334)
Q Consensus 181 ~~~g~~~P-~~Pm~l~lniW~GgdWat~GG~~~~d~s~aPf~a~~~~~~v~ 230 (334)
+.. ..+| ++||+|+||+++|| |+...+. ...-...|..|.|++|||.
T Consensus 210 ~~~-~~~~f~~p~~liln~avg~-w~g~~~~-~~~~~~~p~~m~VDYVRvy 257 (258)
T cd02178 210 EIT-DGTGFDQPMYIIIDTETYD-WRGEPTD-EELADDSKNTFYVDYVRVY 257 (258)
T ss_pred ccC-cCCcCCCCeEEEEEecccc-CCCCCCc-cccCCCCCCeEEEEEEEEe
Confidence 442 3345 89999999999988 9821111 1122356999999999986
No 9
>cd02177 GH16_kappa_carrageenase Kappa-carrageenase, member of glycosyl hydrolase family 16. Kappa-carrageenase is a glycosyl hydrolase family 16 (GH16) member that hydrolyzes the internal beta-1,4-linkage of kappa-carrageenans, a hydrophilic polysaccharide found in the cell wall of Rhodophyceaea, marine red algae. Carrageenans are linear chains of galactose units linked by alternating D-alpha-1,3- and D-beta-1,4-linkages that are additionally modified by a 3,6-anhydro-bridge. Depending on the position and number of sulfate ester modifications they are subdivided into kappa-, iota-, and lambda-carrageenases, kappa being modified once. Carrageenans form thermo-reversible gels widely used for industrial applications. Kappa-carrageenases exist in bacteria belonging to at least three phylogenetically distant branches, including pseudoalteromonas, planctomycetes, and baceroidetes. This domain adopts a curved beta-sandwich conformation, with a tunnel-shaped active site cavity, referred to
Probab=99.96 E-value=1.2e-28 Score=233.15 Aligned_cols=176 Identities=23% Similarity=0.283 Sum_probs=128.7
Q ss_pred CCceEEeCCCcEEEEEEecC-------------------CCCeeeecceeEEEEEEEEEEeeCCCCCceEEEEEeecCCC
Q 019909 42 HDNLVVHTDGKSVHLSLDER-------------------TGSGFVSHDLYLHGFFSASIKLPADYTAGVVVAFYMSNGDM 102 (334)
Q Consensus 42 ~~nv~~~~~G~~l~L~ld~~-------------------~gs~i~Sk~~f~YG~~EariKlp~g~s~Gvv~AFwl~s~d~ 102 (334)
++||.+. +| .|.|+..+. +++.+.|+..|+|||||||||+++. .+|+||||||+++..
T Consensus 43 ~~Nv~v~-dG-~L~i~a~~e~~~~~~~~~~~~~~~~~~ytSg~~~t~~~~~YG~~EaRik~~p~-~~G~wpAfW~~~~~~ 119 (269)
T cd02177 43 EKNVVIS-NG-ILELTMRRNANNTTFWDQQQVPDGPTYFTSGIFKSYAKGTYGYYEARIKGADI-FPGVCPSFWLYSDID 119 (269)
T ss_pred ccceEEe-CC-EEEEEEEeccCCCcccccccccCCCCCEeeEEEEecCcceeeEEEEEEECCCC-CCceEeEEEEeccCC
Confidence 4688774 56 577877543 3456788889999999999998652 389999999998631
Q ss_pred ------CCCCCCeee-EEEcCCc---CCCcc----eEEEeEEcCCCcCC--------CCceeEecCCCCCCCcEEEEEEE
Q 019909 103 ------FEKNHDEID-FEFLGNI---RGKDW----RIQTNIYGNGSTSI--------GREERYNLWFDPSDDFHQYSILW 160 (334)
Q Consensus 103 ------~~~~~dEID-~E~lG~~---~g~p~----~~qTNv~~~G~~~~--------~~e~~~~l~~dpt~dfHtY~i~W 160 (334)
.+|.++||| ||.+|.. .++++ .+|++++.+|.... .....+.+++|++++||+|+|+|
T Consensus 120 ~~~~~~gwp~~GEIDImE~~g~~~~~~~~~~~~~~~~H~~~~~~g~g~w~~~~~~~~~~~~~~~~~~d~~~~fH~y~v~W 199 (269)
T cd02177 120 YSVANEGEVVYSEIDVVELQQFDWYHQDDIRDMDHNLHAIVKENGQGVWKRPKMYPPTEQLNYHRPFDPSKDFHTYGCNV 199 (269)
T ss_pred CCcccCCCCCCCeEEEEEEecCCccccccccccceEEEEeEecCCcccccCccccccccceEEccCCCCccCcEEEEEEE
Confidence 268899999 6888753 12233 35554544443210 11224567789999999999999
Q ss_pred cCCeEEEEEcCeeEEEEeccccCCCCCCCCcceEEEEEeeCC---------CCCCCCCccccCCCCCCEEEEEcEEEEe
Q 019909 161 TDSQIIFYIDGIPIREFKRTASMGGDFPAKPMSLYATIWDGS---------DWATNGGKYRVNYKYAPYVTEFSDFVLH 230 (334)
Q Consensus 161 tpd~I~fyVDG~~vr~~~~~~~~g~~~P~~Pm~l~lniW~Gg---------dWat~GG~~~~d~s~aPf~a~~~~~~v~ 230 (334)
+|++|+|||||++++++.+ .+...||.|.+++-... .|+ |+ ..+.+..|-.|+||+|||.
T Consensus 200 ~~~~i~~yvDg~~~~~~~~------~~w~~~~~~~~~~~~~~p~~~~~~~~~~~--~~--~~~~~~fP~~m~VDyVRv~ 268 (269)
T cd02177 200 NQDEIIWYVDGVEVGRKPN------KYWHRPMNVTLSLGLRKPFVKFFDNKNNA--KA--REKASDFPTSMYVDYVRVW 268 (269)
T ss_pred eCCEEEEEECCEEEEEEcC------CccccccEEeeccccCcchhhhhccccCC--CC--CCccCcCCceEEEEEEEEe
Confidence 9999999999999999974 35578888888875432 355 44 2456789999999999985
No 10
>cd02180 GH16_fungal_KRE6_glucanase Saccharomyces cerevisiae KRE6 and related glucanses, member of glycosyl hydrolase family 16. KRE6 is a Saccharomyces cerevisiae glucanase that participates in the synthesis of beta-1,6-glucan, a major structural component of the cell wall. It is a golgi membrane protein required for normal beta-1,6-glucan levels in the cell wall. KRE6 is closely realted to laminarinase, a glycosyl hydrolase family 16 member that hydrolyzes 1,3-beta-D-glucosidic linkages in 1,3-beta-D-glucans such as laminarins, curdlans, paramylons, and pachymans, with very limited action on mixed-link (1,3-1,4-)-beta-D-glucans.
Probab=99.96 E-value=1.2e-28 Score=235.71 Aligned_cols=188 Identities=17% Similarity=0.193 Sum_probs=128.2
Q ss_pred cccccCCceEEeCCCcEEEEEEecC-------CCCeeee--cceeEEEEEEEEEEeeCC-CCCceEEEEEeecCCC----
Q 019909 37 SHLFGHDNLVVHTDGKSVHLSLDER-------TGSGFVS--HDLYLHGFFSASIKLPAD-YTAGVVVAFYMSNGDM---- 102 (334)
Q Consensus 37 ~~~w~~~nv~~~~~G~~l~L~ld~~-------~gs~i~S--k~~f~YG~~EariKlp~g-~s~Gvv~AFwl~s~d~---- 102 (334)
...+.++|+.+. +| .|.|+..+. +.+.|.| |..|+||+||||||||.+ ...|+||||||+++..
T Consensus 35 ~q~Y~~~nv~v~-~G-~L~I~a~~~~~~~~~ytSg~i~T~~k~~f~yG~~EaR~klp~~~~~~G~WPAfWmlg~~~~~~~ 112 (295)
T cd02180 35 LEWYDPDAVTTI-NG-SLRITMDQFRNHGLNFRSGMLQSWNKLCFTGGYIEASASLPGKPDVSGLWPAVWTMGNLGRPGY 112 (295)
T ss_pred eEEecCcCeEec-CC-eEEEEEEeecCCCCCEEEEEEEECCcceeeCCEEEEEEECCCCCCCCCcceeeecccccccccc
Confidence 345667888775 56 577877543 3566888 556899999999999973 2489999999999631
Q ss_pred ------CCCC------CCeee-EEEcCCcCC-Ccce---EE----------------EeEEcC-----CCcCCCCcee-E
Q 019909 103 ------FEKN------HDEID-FEFLGNIRG-KDWR---IQ----------------TNIYGN-----GSTSIGREER-Y 143 (334)
Q Consensus 103 ------~~~~------~dEID-~E~lG~~~g-~p~~---~q----------------TNv~~~-----G~~~~~~e~~-~ 143 (334)
.||. .+||| ||.+|.+.. ...+ +| +.+|.. +...++..+. .
T Consensus 113 ~~~~~~~WP~~~~~~~~GEIDImE~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 192 (295)
T cd02180 113 LATTEGVWPYSYDGRGAPEIDIIEAQVGNGLGIGQVSQSLQVAPFDAWYRPDYSSDFVTIYNDTTTIMNTYTGGVFQQAI 192 (295)
T ss_pred cccccCCCCcccccCCCCcEEEEeeecCCCCcCceEeeEEeeccccccccCCCCccceEEecCcccccccccCCcccccc
Confidence 2664 49999 899985431 1111 11 111211 0000011110 0
Q ss_pred ----ecCC----CCCCCcEEEEEEEcC-----CeEEEEEcCeeEEEEeccccCC------CCCCCCcceEEEEEeeCCCC
Q 019909 144 ----NLWF----DPSDDFHQYSILWTD-----SQIIFYIDGIPIREFKRTASMG------GDFPAKPMSLYATIWDGSDW 204 (334)
Q Consensus 144 ----~l~~----dpt~dfHtY~i~Wtp-----d~I~fyVDG~~vr~~~~~~~~g------~~~P~~Pm~l~lniW~GgdW 204 (334)
.++. ...++||+|+|+|+| +.|+|||||+++++++..+... ..+|++||+|+||+++||+|
T Consensus 193 ~~~~~~~~~~~~~~~~~fHtY~veW~~~~~~~~~I~wyvDg~~~~~~~~~~~~~~~~~~~~~~~~~P~ylILNlAvGg~w 272 (295)
T cd02180 193 SCVTRLNDSWYPGNGNEFQTYGFEYRPDDEDDGYITWFVDDEPTWTIYAKALGPNGNIGWRIIPEEPMYIILNLGISSNF 272 (295)
T ss_pred ccccccCCccccccCCCcEEEEEEEecCCCCCCEEEEEECCEEEEEEehHHcCCcccccccccCCCCeEEEEEEEecccc
Confidence 1111 136799999999999 8999999999999998653211 24679999999999999999
Q ss_pred CCCCCccccCCCCCCEEEEEcEEEEe
Q 019909 205 ATNGGKYRVNYKYAPYVTEFSDFVLH 230 (334)
Q Consensus 205 at~GG~~~~d~s~aPf~a~~~~~~v~ 230 (334)
+ |. +.+-...|-.|+||+|||.
T Consensus 273 ~---g~-~~~~~~~P~~m~VDyVRVY 294 (295)
T cd02180 273 Q---DI-DWDELQFPATMRIDYVRVY 294 (295)
T ss_pred C---CC-CcccCCCCCEEEEEEEEEE
Confidence 7 32 3445667889999999996
No 11
>cd02182 GH16_Strep_laminarinase_like Streptomyces laminarinase-like, member of glycosyl hydrolase family 16. Proteins similar to Streptomyces sioyaensis beta-1,3-glucanase (laminarinase) present in Actinomycetales as well as Peziomycotina. Laminarinases belong to glycosyl hydrolase family 16 and hydrolyze the glycosidic bond of the 1,3-beta-linked glucan, a major component of fungal and plant cell walls and the structural and storage polysaccharides (laminarin) of marine macro-algae. Members of the GH16 family have a conserved jelly roll fold with an active site channel.
Probab=99.96 E-value=2.9e-28 Score=229.12 Aligned_cols=185 Identities=16% Similarity=0.153 Sum_probs=126.9
Q ss_pred ccCCceEEeCCCcEEEEEEecC-----CCCeeeeccee--EE----EEEEEEEEeeCCC---CCceEEEEEeecCCC---
Q 019909 40 FGHDNLVVHTDGKSVHLSLDER-----TGSGFVSHDLY--LH----GFFSASIKLPADY---TAGVVVAFYMSNGDM--- 102 (334)
Q Consensus 40 w~~~nv~~~~~G~~l~L~ld~~-----~gs~i~Sk~~f--~Y----G~~EariKlp~g~---s~Gvv~AFwl~s~d~--- 102 (334)
++++|+.+..+| .|.|+..+. +.++|.|+.++ .| |+||||||+|.+. ..|+||||||++.+.
T Consensus 43 ~~~~n~~v~~dG-~L~I~a~~~~~~~ytSg~i~s~~~~~~~~~gg~~~~EaRik~p~~~~~~~~G~wPAfWll~~~~~~~ 121 (259)
T cd02182 43 NSTANVQLSGNG-TLQITPLRDGSGKWTSGRIETTRTDFAAPPGGKLRVEASIRLGDVPGSNQQGIWPAFWMLGDSYRGN 121 (259)
T ss_pred CCCcCEEEcCCC-eEEEEEEecCCCCEEEEEEEECCccccccCCCcEEEEEEEECCCCcccCCCCcCeeeeccCCCccCC
Confidence 456899886567 577776544 24567887754 33 4999999999842 379999999999753
Q ss_pred --CCCCCCeee-EEEcCCcCCCcceEEEeEEcCCCcCCCCcee-Ee-cCCCCCCCcEEEEEEEcC-----CeEEEEEcCe
Q 019909 103 --FEKNHDEID-FEFLGNIRGKDWRIQTNIYGNGSTSIGREER-YN-LWFDPSDDFHQYSILWTD-----SQIIFYIDGI 172 (334)
Q Consensus 103 --~~~~~dEID-~E~lG~~~g~p~~~qTNv~~~G~~~~~~e~~-~~-l~~dpt~dfHtY~i~Wtp-----d~I~fyVDG~ 172 (334)
.||..+||| ||..|.. +...+|.++........++.. .. ....+.++||+|+|+|++ ++|+|||||+
T Consensus 122 ~~~WP~~GEIDImE~~~~~---~~~~~t~H~~~~~~~~~~~~~~~~~~~~~~~~~fHtY~veW~~~~~~~~~I~~yvDG~ 198 (259)
T cd02182 122 GTNWPACGELDIMENVNGL---STGYGTLHCGVAPGGPCNEPTGIGAGTRLCDTGFHTYAVEIDRTNGDAESIRWYLDGV 198 (259)
T ss_pred CCCCCccceeeeeeccCCC---CceEEEEeeCCCCCCCCccccCcccCCCCCCCCcEEEEEEEccCCCCCCEEEEEECCE
Confidence 378899999 7999864 334444333221100111111 00 011245899999999997 9999999999
Q ss_pred eEEEEeccccCC-C---CCCCCcceEEEEEeeCCCCCCCCCccccCCCCCCEEEEEcEEEEe
Q 019909 173 PIREFKRTASMG-G---DFPAKPMSLYATIWDGSDWATNGGKYRVNYKYAPYVTEFSDFVLH 230 (334)
Q Consensus 173 ~vr~~~~~~~~g-~---~~P~~Pm~l~lniW~GgdWat~GG~~~~d~s~aPf~a~~~~~~v~ 230 (334)
++++++.....+ . ..|++||+|+||+++||+|+ |..-...-...|-.|.|++|||.
T Consensus 199 ~~~t~~~~~~~~~~~~~~~~~~p~ylIlN~avgg~w~--~~~~~~~~~~~p~~m~VDyVRVy 258 (259)
T cd02182 199 VYHTVTGARVGDETTWQALAHHPLFIILNVAVGGNWP--GAPNGNTATGSGSAMEVDYVAVY 258 (259)
T ss_pred EEEEEehhhcCCCccccCcCCCCeEEEEEEEEeCCcC--CCCCcccccCCCceEEEEEEEEe
Confidence 999998642211 1 24589999999999999998 33111112456889999999986
No 12
>cd08024 GH16_CCF Coelomic cytolytic factor, member of glycosyl hydrolase family 16. Subgroup of glucanases of unknown function that are related to beta-GRP (beta-1,3-glucan recognition protein), but contain active site residues. Beta-GRPs are one group of pattern recognition receptors (PRRs), also referred to as biosensor proteins, that complexes with pathogen-associated beta-1,3-glucans and then transduces signals necessary for activation of an appropriate innate immune response. Beta-GRPs are present in insects and lack all catalytic residues. This subgroup contains related proteins that still contain the active site and are widely distributed in eukaryotes. Their structures adopt a jelly roll fold with a deep active site channel harboring the catalytic residues, like those of other glycosyl hydrolase family 16 members.
Probab=99.94 E-value=3.8e-26 Score=222.02 Aligned_cols=140 Identities=22% Similarity=0.221 Sum_probs=102.5
Q ss_pred Ceeee--cceeEEEEEEEEEEeeCCCCCceEEEEEeecCCC---CCCCCCeee-EEEcCCcCCCc-------ceEEEeEE
Q 019909 64 SGFVS--HDLYLHGFFSASIKLPADYTAGVVVAFYMSNGDM---FEKNHDEID-FEFLGNIRGKD-------WRIQTNIY 130 (334)
Q Consensus 64 s~i~S--k~~f~YG~~EariKlp~g~s~Gvv~AFwl~s~d~---~~~~~dEID-~E~lG~~~g~p-------~~~qTNv~ 130 (334)
+.|.| +..|+|||||||||||.| .|+||||||++.+. .||..+||| ||.+|+....+ ..++..+|
T Consensus 102 gri~T~~kf~f~YGrvE~RaKlP~G--~g~WPAfWmlp~~~~yg~WP~sGEIDImE~~Gn~~~~~~~~~~g~~~v~~tlH 179 (330)
T cd08024 102 ARLRTKNSFSFKYGRVEVRAKLPTG--DWLWPAIWMLPRDNVYGGWPRSGEIDIMESRGNRPLYDGGEAIGINSVGSTLH 179 (330)
T ss_pred EEEEeCCccceeceEEEEEEECCCC--CccceeeeecCCccccCCCCCCCcEEEEEEeCCCcccccccccCcceEEEEEE
Confidence 45667 456899999999999998 89999999999763 378999999 89999754221 13455555
Q ss_pred cCCCcCCC--Cc--eeE-ecCCCCCCCcEEEEEEEcCCeEEEEEcCeeEEEEeccc-------------------cCCCC
Q 019909 131 GNGSTSIG--RE--ERY-NLWFDPSDDFHQYSILWTDSQIIFYIDGIPIREFKRTA-------------------SMGGD 186 (334)
Q Consensus 131 ~~G~~~~~--~e--~~~-~l~~dpt~dfHtY~i~Wtpd~I~fyVDG~~vr~~~~~~-------------------~~g~~ 186 (334)
........ +. ... ....+.+++||+|+|+|+|+.|+|||||+++++++... ..+..
T Consensus 180 ~g~~~~~~~~~~~~~~~~~~~~~~~~~FHtY~veWtpd~I~fyVDG~~~~~v~~~~~~~w~~g~~~~~~~~~~w~~~~~~ 259 (330)
T cd08024 180 WGPDPGQNRYTKTTGKRSDSGGDFADDFHTYGLDWTPDHIRFYVDDRLILTLDVPGQGFWEFGGFSGTPIDNPWAGGGKM 259 (330)
T ss_pred eCCCCCCCccccccceeccCCCCcccCCEEEEEEEeCCEEEEEECCEEEEEEecCCCCceeeccccccccCCcccccCcC
Confidence 32211110 11 111 12345678999999999999999999999999998621 01234
Q ss_pred CC-CCcceEEEEEeeCCCCC
Q 019909 187 FP-AKPMSLYATIWDGSDWA 205 (334)
Q Consensus 187 ~P-~~Pm~l~lniW~GgdWa 205 (334)
.| ++|+||+||+++||.|.
T Consensus 260 aPFd~~fyliLNvAVGG~~~ 279 (330)
T cd08024 260 APFDQEFYLILNVAVGGTNG 279 (330)
T ss_pred CCCCCCEEEEEEEEecCCCC
Confidence 57 89999999999999885
No 13
>cd02179 GH16_beta_GRP beta-1,3-glucan recognition protein, member of glycosyl hydrolase family 16. Beta-GRP (beta-1,3-glucan recognition protein) is one of several pattern recognition receptors (PRRs), also referred to as biosensor proteins, that complexes with pathogen-associated beta-1,3-glucans and then transduces signals necessary for activation of an appropriate innate immune response. They are present in insects and lack all catalytic residues. This subgroup also contains related proteins of unknown function that still contain the active site. Their structures adopt a jelly roll fold with a deep active site channel harboring the catalytic residues, like those of other glycosyl hydrolase family 16 members.
Probab=99.94 E-value=1.5e-25 Score=217.02 Aligned_cols=137 Identities=19% Similarity=0.153 Sum_probs=96.4
Q ss_pred Ceeeec--ceeEEEEEEEEEEeeCCCCCceEEEEEeecCCC-C--C-CCCCeee-EEEcCCcCCC---cceEEEeEEcCC
Q 019909 64 SGFVSH--DLYLHGFFSASIKLPADYTAGVVVAFYMSNGDM-F--E-KNHDEID-FEFLGNIRGK---DWRIQTNIYGNG 133 (334)
Q Consensus 64 s~i~Sk--~~f~YG~~EariKlp~g~s~Gvv~AFwl~s~d~-~--~-~~~dEID-~E~lG~~~g~---p~~~qTNv~~~G 133 (334)
|.|.|+ ..|+|||||||||||.| .|+||||||++.+. + + |.++||| ||.+|+.... ..+..+.+|..-
T Consensus 99 ari~Tk~~f~f~YGrvEvRAKlP~G--dglWPAiWmlP~~~~yg~w~P~sGEIDImE~~Gn~~~~~~g~~~~~~~l~~g~ 176 (321)
T cd02179 99 ARINTKNSFAFKYGRVEIRAKLPKG--DWIYPELLLEPVNNYYGSSDYASGQIRIAFARGNAVLRADGTDIGGKKLYGGP 176 (321)
T ss_pred eeEEECCcEeEeccEEEEEEEccCC--CCcccceeecccccccCCCCCCCCeEEEEEeCCCCccccCCceeccceEEccc
Confidence 556675 45899999999999998 99999999999864 2 3 7899999 7999985210 011122222211
Q ss_pred Cc---CCCCce---eEecCCCCCCCcEEEEEEEcCCeEEEEEcCeeEEEEecccc---------------CC-CCCC-CC
Q 019909 134 ST---SIGREE---RYNLWFDPSDDFHQYSILWTDSQIIFYIDGIPIREFKRTAS---------------MG-GDFP-AK 190 (334)
Q Consensus 134 ~~---~~~~e~---~~~l~~dpt~dfHtY~i~Wtpd~I~fyVDG~~vr~~~~~~~---------------~g-~~~P-~~ 190 (334)
.. ...+.. ......+.+++||+|+|+|+|+.|+|||||+++++++.... .| ...| ++
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~ddFHtY~leWtpd~I~f~VDg~~~~~~~~~~~~~~~~~~~~~~~~w~~g~~~aPFD~ 256 (321)
T cd02179 177 VLTDAEPHRSANLKTKINNELWSDDFHVYTLEWKPDGITLMVDGEEYGEIEPGEGGYSEAANNPAASRWLGGTVMAPFDK 256 (321)
T ss_pred ccCCCcccccccccccCCCCccccCcEEEEEEEeCCEEEEEECCEEEEEEecCcCccccccccccCccccccCccCCCCC
Confidence 00 000100 11112456789999999999999999999999999986321 11 2357 89
Q ss_pred cceEEEEEeeCC
Q 019909 191 PMSLYATIWDGS 202 (334)
Q Consensus 191 Pm~l~lniW~Gg 202 (334)
|+||+||+++||
T Consensus 257 ~FyliLNlAVGG 268 (321)
T cd02179 257 EFYLSLGVGVGG 268 (321)
T ss_pred CeEEEEEEEecC
Confidence 999999999987
No 14
>COG2273 SKN1 Beta-glucanase/Beta-glucan synthetase [Carbohydrate transport and metabolism]
Probab=99.92 E-value=3e-24 Score=209.98 Aligned_cols=156 Identities=27% Similarity=0.450 Sum_probs=127.3
Q ss_pred ccCCceEEeCCCcEEEEEEec-------CCCCeeeecce--eEEEEEEEEEEeeCCCCCceEEEEEeecCCC-CCCCCCe
Q 019909 40 FGHDNLVVHTDGKSVHLSLDE-------RTGSGFVSHDL--YLHGFFSASIKLPADYTAGVVVAFYMSNGDM-FEKNHDE 109 (334)
Q Consensus 40 w~~~nv~~~~~G~~l~L~ld~-------~~gs~i~Sk~~--f~YG~~EariKlp~g~s~Gvv~AFwl~s~d~-~~~~~dE 109 (334)
|..+++.+..+| .|.|.+++ .+++.++|..+ |+||++|+|||+|.+ .|+||||||+++.. .+..++|
T Consensus 76 w~~~~~~lt~~~-~l~l~~~~~~~~~~~y~sG~l~T~~r~~~~YG~~Evrak~~~~--~G~wpafw~~~g~~~dg~wp~e 152 (355)
T COG2273 76 WYVSNVVLTIGG-TLELDIEKFKINDRDYRSGMLTTYNRFCFTYGTYEVRAKLPLV--SGLWPAFWTLTGLSRDGGWPDE 152 (355)
T ss_pred eeecceeEeeCC-eeeeeechhcccccccccceEEecCcceEeeeEEEEEeccCCC--cccceeeEeccCcccCCCCCcc
Confidence 555566665555 67777764 35678898888 899999999999986 99999999999854 3567899
Q ss_pred eeEEEcCCcCCCcceEEEeEEcCCCcCCCCceeEecCC-CCCCCcEEEEEEEcCCeEEEEEcCeeEEEEeccccCCCCCC
Q 019909 110 IDFEFLGNIRGKDWRIQTNIYGNGSTSIGREERYNLWF-DPSDDFHQYSILWTDSQIIFYIDGIPIREFKRTASMGGDFP 188 (334)
Q Consensus 110 ID~E~lG~~~g~p~~~qTNv~~~G~~~~~~e~~~~l~~-dpt~dfHtY~i~Wtpd~I~fyVDG~~vr~~~~~~~~g~~~P 188 (334)
||+|++|+... +..+|+|.+.++. ++.+....+++ +..++||+|+++|.++.|+|||||++++++... ..+|
T Consensus 153 ~d~e~lgg~~~-~~~i~t~~~~~~~--~~~~~~~~~~~~~~~~~fhty~~~W~~~~i~Wyvdg~~~~~~~~p----~~~~ 225 (355)
T COG2273 153 IDIEDLGGQST-NTVIQTNHYQGGG--GGTSKLVDHPNPDAIDGFHTYAFLWGEDSISWYVDGAPVATATKP----DYIP 225 (355)
T ss_pred eeeeeecCCCc-ccceEeeeeccCC--CCceecccccCCCcccccccceeeccCCeEEEEEcceEeeEEecc----ccCc
Confidence 99999997643 4569999998887 34555555566 888999999999999999999999999999864 3569
Q ss_pred CCcceEEEEEeeCCCCC
Q 019909 189 AKPMSLYATIWDGSDWA 205 (334)
Q Consensus 189 ~~Pm~l~lniW~GgdWa 205 (334)
+.||++++|+|.++.+.
T Consensus 226 ~~p~y~~~nl~~~~~~~ 242 (355)
T COG2273 226 QIPFYVLVNLWMGGYAG 242 (355)
T ss_pred CCcceeEEeecccCccC
Confidence 99999999999998764
No 15
>PF06955 XET_C: Xyloglucan endo-transglycosylase (XET) C-terminus; InterPro: IPR010713 This entry represents the C terminus (approximately 60 residues) of plant xyloglucan endo-transglycosylase (XET). Xyloglucan is the predominant hemicellulose in the cell walls of most dicotyledons. With cellulose, it forms a network that strengthens the cell wall. XET catalyses the splitting of xyloglucan chains and the linking of the newly generated reducing end to the non-reducing end of another xyloglucan chain, thereby loosening the cell wall []. ; GO: 0016762 xyloglucan:xyloglucosyl transferase activity, 0006073 cellular glucan metabolic process, 0005618 cell wall, 0048046 apoplast; PDB: 1UMZ_A 1UN1_B 2VH9_B 2UWC_A 2UWB_B 2UWA_C.
Probab=99.75 E-value=5.8e-19 Score=126.95 Aligned_cols=43 Identities=37% Similarity=0.607 Sum_probs=34.3
Q ss_pred CCCCCCCCCCCHHHHHHHHHHhhcCeEEeccccCCcCCCC-CCCc
Q 019909 249 SSKVSIPTGVSPSQRIKMENFRRKHMTYSYCYDQIRYKVP-PFEC 292 (334)
Q Consensus 249 ~~~~~~~~~l~~~q~~~~~~vr~~~m~YdYC~D~~R~p~~-p~EC 292 (334)
|+....++ |+++|+++|+|||+||||||||+|++|||.. |+||
T Consensus 8 w~~~~~~~-L~~~q~~~m~wvr~~ymiYdYC~D~~Rfp~~~P~EC 51 (51)
T PF06955_consen 8 WWNQPYAQ-LSAKQRRQMRWVRRNYMIYDYCTDTKRFPNPLPPEC 51 (51)
T ss_dssp GGCSCCCS---HHHHHHHHHHHHHCEEEEGGG-TTT-SGCGSTTH
T ss_pred cccCcccC-CCHHHHHHHHHHHHcCeEecccCCCCcCCCCCCCCC
Confidence 44455566 9999999999999999999999999999985 9999
No 16
>PF03935 SKN1: Beta-glucan synthesis-associated protein (SKN1); InterPro: IPR005629 This family consists of the beta-glucan synthesis-associated proteins KRE6 and SKN1. Beta1,6-Glucan is a key component of the yeast cell wall, interconnecting cell wall proteins, beta1,3-glucan, and chitin. It has been postulated that the synthesis of beta1,6-glucan begins in the endoplasmic reticulum with the formation of protein-bound primer structures and that these primer structures are extended in the Golgi complex by two putative glucosyltransferases that are functionally redundant, Kre6 and Skn1. This is followed by maturation steps at the cell surface and by coupling to other cell wall macromolecules [].
Probab=99.64 E-value=4.7e-15 Score=149.58 Aligned_cols=88 Identities=18% Similarity=0.327 Sum_probs=68.5
Q ss_pred CCCcEEEEEEEcCC-----eEEEEEcCeeEEEEeccccC-----C-CCCCCCcceEEEEEeeCCCCCCCCCccccCCC--
Q 019909 150 SDDFHQYSILWTDS-----QIIFYIDGIPIREFKRTASM-----G-GDFPAKPMSLYATIWDGSDWATNGGKYRVNYK-- 216 (334)
Q Consensus 150 t~dfHtY~i~Wtpd-----~I~fyVDG~~vr~~~~~~~~-----g-~~~P~~Pm~l~lniW~GgdWat~GG~~~~d~s-- 216 (334)
..+||+|++||.|. .|+|+|||+++.++...... + -.+|..||+|++|+....+|+ .+||.
T Consensus 365 ~~~f~~YgfEy~Pg~~~~GYItW~vdg~~twti~a~Al~~~~~I~~R~Ip~EPMyIIlNlgmS~sf~------~vd~~~L 438 (504)
T PF03935_consen 365 GGCFQTYGFEYKPGDGDDGYITWFVDGEPTWTINAEALGPNPNIGQRPIPEEPMYIILNLGMSSSFG------YVDWNHL 438 (504)
T ss_pred CCceEEEEEEEEeCCCCCeEEEEEECCEEEEEEEhhhcCCCCCcCccccCcCCceeeeccccccccC------ccccccc
Confidence 37899999999874 79999999999999865321 1 257899999999999999997 46775
Q ss_pred CCCEEEEEcEEEEeeeecCCCCCCCCcccCC
Q 019909 217 YAPYVTEFSDFVLHGCSFDPIEQTSSKCDIT 247 (334)
Q Consensus 217 ~aPf~a~~~~~~v~~c~~~~~~~~~~~C~~~ 247 (334)
..|..|.||+|||.. .... ..-.|.++
T Consensus 439 ~FP~~M~IDYVRVYQ--~~~~--~~vgCDP~ 465 (504)
T PF03935_consen 439 CFPATMRIDYVRVYQ--PEDA--INVGCDPP 465 (504)
T ss_pred cccceEEEeEEEEec--cCCC--CeeeeCCC
Confidence 577899999999973 2221 12378754
No 17
>cd02181 GH16_fungal_Lam16A_glucanase fungal 1,3(4)-beta-D-glucanases, similar to Phanerochaete chrysosporium laminarinase 16A. Group of fungal 1,3(4)-beta-D-glucanases, similar to Phanerochaete chrysosporium laminarinase 16A. Lam16A belongs to the 'nonspecific' 1,3(4)-beta-glucanase subfamily, although beta-1,6 branching and beta-1,4 bonds specifically define where Lam16A hydrolyzes its substrates, like curdlan (beta-1,3-glucan), lichenin (beta-1,3-1,4-mixed linkage glucan), and laminarin (beta-1,6-branched-1,3-glucan).
Probab=99.45 E-value=8.2e-13 Score=126.00 Aligned_cols=147 Identities=24% Similarity=0.337 Sum_probs=95.3
Q ss_pred CCCcEEEEEEecCC---------CCeeeecceeEEEEEEEEE-EeeCCCCCceEEEEEeecCCCCCCCCCeee-EEEcCC
Q 019909 49 TDGKSVHLSLDERT---------GSGFVSHDLYLHGFFSASI-KLPADYTAGVVVAFYMSNGDMFEKNHDEID-FEFLGN 117 (334)
Q Consensus 49 ~~G~~l~L~ld~~~---------gs~i~Sk~~f~YG~~Eari-Klp~g~s~Gvv~AFwl~s~d~~~~~~dEID-~E~lG~ 117 (334)
.+| .|.|.+|..+ .+.|.||+.|.+|+||+|| |||.+ .|+||||||++. .||..+||| ||.++.
T Consensus 47 ~~g-~l~i~vd~t~~~~~~~gr~S~ri~sk~~f~~g~~~~~~~~~P~g--~G~WPAfW~~g~--~WP~~GEIDImE~vn~ 121 (293)
T cd02181 47 NSG-NVYLGVDSTTTLPSGAGRNSVRIESKKTYNTGLFIADIAHMPGG--CGTWPAFWTVGP--NWPNGGEIDIIEGVNL 121 (293)
T ss_pred eCC-eEEEEEeceeccCCCCCceEEEEEEeceeecceEEEEhhhCCCC--CCccchhhhcCC--CCCCCCcEEEEeccCC
Confidence 445 5778777542 3468899999999999998 99997 999999999988 489999999 899985
Q ss_pred cCCCcceEEEeEEcCCCc--------CC-------------CCc--------eeEecCCCCCCCcEEEEEEEcCCeEEEE
Q 019909 118 IRGKDWRIQTNIYGNGST--------SI-------------GRE--------ERYNLWFDPSDDFHQYSILWTDSQIIFY 168 (334)
Q Consensus 118 ~~g~p~~~qTNv~~~G~~--------~~-------------~~e--------~~~~l~~dpt~dfHtY~i~Wtpd~I~fy 168 (334)
.+. .+..+|+.+.. .+ +.. ..|-..|+ ..+=-.|+++|+.+.|..+
T Consensus 122 ~~~----n~~tlHt~~gC~i~~~~~~tg~~~~~nC~~~~~~n~GC~v~~~~~~syG~~FN-~~GGGvyA~ew~~~~I~vW 196 (293)
T cd02181 122 QTS----NQMTLHTGPGCTISNSGSFTGTVTTTNCDVNQNGNAGCGVTSTSTNSYGAGFN-AAGGGVYAMEWTSDGIKVW 196 (293)
T ss_pred CCc----eEEEEecCCCEEcCCCCCccCcccCCCcCCCCCCCCCceeecCCCCccccccc-cCCCcEEEEEEccCcEEEE
Confidence 332 33334432110 00 000 00111222 2344699999999998755
Q ss_pred E---cCeeEEEEeccccC---C---CCCCC---------CcceEEEEEeeCCCCC
Q 019909 169 I---DGIPIREFKRTASM---G---GDFPA---------KPMSLYATIWDGSDWA 205 (334)
Q Consensus 169 V---DG~~vr~~~~~~~~---g---~~~P~---------~Pm~l~lniW~GgdWa 205 (334)
. +.+|--.......+ | ..||. ++++|++++--=|+||
T Consensus 197 ff~R~~iP~di~~~~pdPs~WG~P~A~f~~~~Cdi~~~F~~~~iVfn~tfCGdwA 251 (293)
T cd02181 197 FFPRGSIPADITSGSPDPSTWGTPAASFPGSSCDIDSFFKDQRIVFDTTFCGDWA 251 (293)
T ss_pred EecCCCCCcccccCCCCCcccCcccccCCCCCCChhHhcccCEEEEEeecccccc
Confidence 4 23332221111111 1 34664 8999999999999999
No 18
>smart00560 LamGL LamG-like jellyroll fold domain.
Probab=88.83 E-value=13 Score=31.10 Aligned_cols=69 Identities=9% Similarity=0.179 Sum_probs=44.1
Q ss_pred CCCCcEEEEEEEcC--CeEEEEEcCeeEEEEeccccCCCCCC-CCcceEEEEEeeCCCCCCCCCccccCCCCCCEEEEEc
Q 019909 149 PSDDFHQYSILWTD--SQIIFYIDGIPIREFKRTASMGGDFP-AKPMSLYATIWDGSDWATNGGKYRVNYKYAPYVTEFS 225 (334)
Q Consensus 149 pt~dfHtY~i~Wtp--d~I~fyVDG~~vr~~~~~~~~g~~~P-~~Pm~l~lniW~GgdWat~GG~~~~d~s~aPf~a~~~ 225 (334)
+...||...+-++. .+|..||||+++.+.... ..+ ..|+.|-..... ++ ....+|.-.++
T Consensus 59 ~~~~W~hva~v~d~~~g~~~lYvnG~~~~~~~~~-----~~~~~~~~~iG~~~~~-------~~-----~~~~~f~G~Id 121 (133)
T smart00560 59 WIGVWVHLAGVYDGGAGKLSLYVNGVEVATSETQ-----PSPSSGNLPQGGRILL-------GG-----AGGENFSGRLD 121 (133)
T ss_pred CCCCEEEEEEEEECCCCeEEEEECCEEccccccC-----CcccCCceEEeeeccC-------CC-----CCCCCceEEee
Confidence 34789999999988 789999999998654321 112 333333211111 11 12357889999
Q ss_pred EEEEeeeec
Q 019909 226 DFVLHGCSF 234 (334)
Q Consensus 226 ~~~v~~c~~ 234 (334)
.|+|..++-
T Consensus 122 evriy~~aL 130 (133)
T smart00560 122 EVRVYNRAL 130 (133)
T ss_pred EEEEecccc
Confidence 999987653
No 19
>PF13385 Laminin_G_3: Concanavalin A-like lectin/glucanases superfamily; PDB: 4DQA_A 1N1Y_A 1MZ6_A 1MZ5_A 1N1S_A 2A75_A 1WCS_A 1N1T_A 1N1V_A 2FHR_A ....
Probab=87.92 E-value=1.4 Score=35.99 Aligned_cols=67 Identities=13% Similarity=0.285 Sum_probs=40.6
Q ss_pred CCCCcEEEEEEEcCCeEEEEEcCeeEEEEeccccCCCCCCCCcceEEEEEeeCCCCCCCCCccccCCCCCCEEEEEcEEE
Q 019909 149 PSDDFHQYSILWTDSQIIFYIDGIPIREFKRTASMGGDFPAKPMSLYATIWDGSDWATNGGKYRVNYKYAPYVTEFSDFV 228 (334)
Q Consensus 149 pt~dfHtY~i~Wtpd~I~fyVDG~~vr~~~~~~~~g~~~P~~Pm~l~lniW~GgdWat~GG~~~~d~s~aPf~a~~~~~~ 228 (334)
+...||..++-|..+.+.+||||+.+.+....... ...+..++. .|.+. ....+|...+++|+
T Consensus 83 ~~~~W~~l~~~~~~~~~~lyvnG~~~~~~~~~~~~-~~~~~~~~~------iG~~~----------~~~~~~~g~i~~~~ 145 (157)
T PF13385_consen 83 PDNKWHHLALTYDGSTVTLYVNGELVGSSTIPSNI-SLNSNGPLF------IGGSG----------GGSSPFNGYIDDLR 145 (157)
T ss_dssp -TT-EEEEEEEEETTEEEEEETTEEETTCTEESSS-STTSCCEEE------ESS-S----------TT--B-EEEEEEEE
T ss_pred CCCCEEEEEEEEECCeEEEEECCEEEEeEeccCCc-CCCCcceEE------EeecC----------CCCCceEEEEEEEE
Confidence 35899999999999999999999998766542210 011122221 22222 22578999999999
Q ss_pred Eeee
Q 019909 229 LHGC 232 (334)
Q Consensus 229 v~~c 232 (334)
|...
T Consensus 146 i~~~ 149 (157)
T PF13385_consen 146 IYNR 149 (157)
T ss_dssp EESS
T ss_pred EECc
Confidence 9743
No 20
>PF09264 Sial-lect-inser: Vibrio cholerae sialidase, lectin insertion; InterPro: IPR015344 This domain is predominantly found in Vibrio cholerae sialidase, and adopt a beta sandwich structure consisting of 12-14 strands arranged in two beta-sheets. It binds to lectins with high affinity helping to target the protein to sialic acid-rich environments, thereby enhancing the catalytic efficiency of the enzyme []. ; PDB: 1W0P_A 1W0O_A 1KIT_A 2W68_B.
Probab=87.17 E-value=1.1 Score=40.77 Aligned_cols=28 Identities=29% Similarity=0.724 Sum_probs=24.8
Q ss_pred CCcEEEEEEEcC--CeEEEEEcCeeEEEEe
Q 019909 151 DDFHQYSILWTD--SQIIFYIDGIPIREFK 178 (334)
Q Consensus 151 ~dfHtY~i~Wtp--d~I~fyVDG~~vr~~~ 178 (334)
.+||.|.|...| ..-.|||||++|.++.
T Consensus 92 ~gyH~Y~i~~~p~~~tASfy~DG~lI~tw~ 121 (198)
T PF09264_consen 92 HGYHKYEIVFSPLTNTASFYFDGTLIATWS 121 (198)
T ss_dssp CSEEEEEEEEETTTTEEEEEETTEEEEEE-
T ss_pred cceeEEEEEecCCCCceEEEECCEEEeecc
Confidence 579999999977 8899999999999853
No 21
>PF10287 DUF2401: Putative TOS1-like glycosyl hydrolase (DUF2401); InterPro: IPR018805 This entry represents a family of proteins conserved primarily in fungi. One member is annotated putatively as OPEL, a house-keeping protein, but this could not be confirmed. It contains 5 highly conserved cysteines two of which form a characteristic CGC sequence motif.
Probab=83.95 E-value=5.2 Score=37.59 Aligned_cols=81 Identities=19% Similarity=0.399 Sum_probs=48.5
Q ss_pred EEEEEEeeCCC-----CCceEEEEEeecCCC-----C-------C-CCCCeee-EEEcCCcCCCcceEEEeEEc-CCCcC
Q 019909 77 FSASIKLPADY-----TAGVVVAFYMSNGDM-----F-------E-KNHDEID-FEFLGNIRGKDWRIQTNIYG-NGSTS 136 (334)
Q Consensus 77 ~EariKlp~g~-----s~Gvv~AFwl~s~d~-----~-------~-~~~dEID-~E~lG~~~g~p~~~qTNv~~-~G~~~ 136 (334)
|-.+.++|... ...=.||+||++.-. + | ..++|+| ||.|... +. .+.+.+|. +|...
T Consensus 103 Flfef~MP~~~~~~~~~~~DmPAIWlLNA~IpRT~QY~~~~CSCW~sGCGEfDifEVl~~g--~~-k~~St~H~~qG~~~ 179 (235)
T PF10287_consen 103 FLFEFSMPHETDGGSGFNYDMPAIWLLNAQIPRTSQYGNAGCSCWKSGCGEFDIFEVLNSG--DD-KLKSTFHDYQGTDD 179 (235)
T ss_pred EEEEEECCCCcCCCCCCCCCcChhHhccccCcchhhcCCCCCCccCCCcccceeeeeccCC--Cc-eeEEEEecccCccc
Confidence 56677778731 234689999998632 2 2 3689999 8999763 33 45555654 44311
Q ss_pred ---CCCceeEecCCC-CCCCcEEEEEEEcCC
Q 019909 137 ---IGREERYNLWFD-PSDDFHQYSILWTDS 163 (334)
Q Consensus 137 ---~~~e~~~~l~~d-pt~dfHtY~i~Wtpd 163 (334)
+.-... .|. |++..-++++.++.+
T Consensus 180 ~~~g~G~~~---yf~RPt~~~~k~aVifd~~ 207 (235)
T PF10287_consen 180 INGGGGSSD---YFKRPTSGTMKVAVIFDSS 207 (235)
T ss_pred cCCCCCCCC---cccCCCCCCeEEEEEEcCC
Confidence 111111 122 667788888888643
No 22
>KOG1834 consensus Calsyntenin [Extracellular structures]
Probab=81.95 E-value=8.4 Score=41.27 Aligned_cols=57 Identities=21% Similarity=0.385 Sum_probs=41.4
Q ss_pred cCCCCCCCcEEEEEEEcCCeEEEEEcCeeEEEEeccccCCCCCCCCcceEEEEEeeCCCCC
Q 019909 145 LWFDPSDDFHQYSILWTDSQIIFYIDGIPIREFKRTASMGGDFPAKPMSLYATIWDGSDWA 205 (334)
Q Consensus 145 l~~dpt~dfHtY~i~Wtpd~I~fyVDG~~vr~~~~~~~~g~~~P~~Pm~l~lniW~GgdWa 205 (334)
|+--...+||.|.+.-+--.++.||||+-..-..-. .+||-.|.++-..+=+|-=|.
T Consensus 436 l~qVCD~EWH~Y~ln~efp~VtlyvDG~Sfep~~i~----ddwplHpsk~~tqLvVGACW~ 492 (952)
T KOG1834|consen 436 LPQVCDNEWHHYVLNVEFPDVTLYVDGKSFEPPLIT----DDWPLHPSKIETQLVVGACWQ 492 (952)
T ss_pred chhhhhhhhheeEEeecCceEEEEEcCcccCCceec----cCCccCcccccceeEEeeecc
Confidence 333345799999999975559999999876433222 468877777777777777787
No 23
>smart00210 TSPN Thrombospondin N-terminal -like domains. Heparin-binding and cell adhesion domain of thrombospondin
Probab=79.97 E-value=35 Score=30.27 Aligned_cols=29 Identities=17% Similarity=0.310 Sum_probs=26.5
Q ss_pred CCCcEEEEEEEcCCeEEEEEcCeeEEEEe
Q 019909 150 SDDFHQYSILWTDSQIIFYIDGIPIREFK 178 (334)
Q Consensus 150 t~dfHtY~i~Wtpd~I~fyVDG~~vr~~~ 178 (334)
...||..+|.+..+.+++|||++++.+..
T Consensus 116 dg~WH~lal~V~~~~v~LyvDC~~~~~~~ 144 (184)
T smart00210 116 DGQWHKLALSVSGSSATLYVDCNEIDSRP 144 (184)
T ss_pred cCCceEEEEEEeCCEEEEEECCcccccee
Confidence 46899999999999999999999998765
No 24
>PF06439 DUF1080: Domain of Unknown Function (DUF1080); InterPro: IPR010496 This is a family of proteins of unknown function.; PDB: 3IMM_B 3NMB_A 3S5Q_A 3OSD_A 3HBK_A 3H3L_A 3U1X_A.
Probab=75.31 E-value=6.3 Score=34.19 Aligned_cols=32 Identities=19% Similarity=0.596 Sum_probs=28.8
Q ss_pred CCCCcEEEEEEEcCCeEEEEEcCeeEEEEecc
Q 019909 149 PSDDFHQYSILWTDSQIIFYIDGIPIREFKRT 180 (334)
Q Consensus 149 pt~dfHtY~i~Wtpd~I~fyVDG~~vr~~~~~ 180 (334)
+..+||++.|.-..++|+.+|||++|.++...
T Consensus 125 ~~~~W~~~~I~~~g~~i~v~vnG~~v~~~~d~ 156 (185)
T PF06439_consen 125 PPGEWNTVRIVVKGNRITVWVNGKPVADFTDP 156 (185)
T ss_dssp -TTSEEEEEEEEETTEEEEEETTEEEEEEETT
T ss_pred CCCceEEEEEEEECCEEEEEECCEEEEEEEcC
Confidence 46799999999999999999999999999864
No 25
>cd00110 LamG Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of purposes including signal transduction via cell-surface steroid receptors, adhesion, migration and differentiation through mediation of cell adhesion molecules.
Probab=65.70 E-value=74 Score=26.04 Aligned_cols=86 Identities=17% Similarity=0.186 Sum_probs=47.6
Q ss_pred EEEEEEEEEEeeCCCCCceEEEEEeecCCCCCCCCCeeeEEEcCCcCCCcceEEEeEEcCCCcCCCCceeEecCC-CCCC
Q 019909 73 LHGFFSASIKLPADYTAGVVVAFYMSNGDMFEKNHDEIDFEFLGNIRGKDWRIQTNIYGNGSTSIGREERYNLWF-DPSD 151 (334)
Q Consensus 73 ~YG~~EariKlp~g~s~Gvv~AFwl~s~d~~~~~~dEID~E~lG~~~g~p~~~qTNv~~~G~~~~~~e~~~~l~~-dpt~ 151 (334)
....+++++|.... .|++ |++-+. ...+.|-+|... | .+...+-. |. ....+.... -...
T Consensus 20 ~~~~i~~~frt~~~--~g~l--~~~~~~----~~~~~~~l~l~~---g---~l~~~~~~-g~----~~~~~~~~~~v~dg 80 (151)
T cd00110 20 TRLSISFSFRTTSP--NGLL--LYAGSQ----NGGDFLALELED---G---RLVLRYDL-GS----GSLVLSSKTPLNDG 80 (151)
T ss_pred ceeEEEEEEEeCCC--CeEE--EEecCC----CCCCEEEEEEEC---C---EEEEEEcC-Cc----ccEEEEccCccCCC
Confidence 35567777777663 5654 222221 134555566553 2 23332221 21 112222221 2345
Q ss_pred CcEEEEEEEcCCeEEEEEcCeeEEEE
Q 019909 152 DFHQYSILWTDSQIIFYIDGIPIREF 177 (334)
Q Consensus 152 dfHtY~i~Wtpd~I~fyVDG~~vr~~ 177 (334)
.||...|.+....++.+|||..+.+.
T Consensus 81 ~Wh~v~i~~~~~~~~l~VD~~~~~~~ 106 (151)
T cd00110 81 QWHSVSVERNGRSVTLSVDGERVVES 106 (151)
T ss_pred CEEEEEEEECCCEEEEEECCccEEee
Confidence 79999999999999999999854443
No 26
>cd00152 PTX Pentraxins are plasma proteins characterized by their pentameric discoid assembly and their Ca2+ dependent ligand binding, such as Serum amyloid P component (SAP) and C-reactive Protein (CRP), which are cytokine-inducible acute-phase proteins implicated in innate immunity. CRP binds to ligands containing phosphocholine, SAP binds to amyloid fibrils, DNA, chromatin, fibronectin, C4-binding proteins and glycosaminoglycans. "Long" pentraxins have N-terminal extensions to the common pentraxin domain; one group, the neuronal pentraxins, may be involved in synapse formation and remodeling, and they may also be able to form heteromultimers.
Probab=54.81 E-value=80 Score=28.33 Aligned_cols=72 Identities=15% Similarity=0.207 Sum_probs=42.7
Q ss_pred CCCCcEEEEEEEc--CCeEEEEEcCeeEEEEeccccCCCCCCCCcceEEEEEeeCCCCCCCCCccccCCCCCCEEEEEcE
Q 019909 149 PSDDFHQYSILWT--DSQIIFYIDGIPIREFKRTASMGGDFPAKPMSLYATIWDGSDWATNGGKYRVNYKYAPYVTEFSD 226 (334)
Q Consensus 149 pt~dfHtY~i~Wt--pd~I~fyVDG~~vr~~~~~~~~g~~~P~~Pm~l~lniW~GgdWat~GG~~~~d~s~aPf~a~~~~ 226 (334)
....||...+.|+ ...+.+||||+++..-.- ..+..++. ...|+|.-- -...||. .+. ...|.-.+++
T Consensus 88 ~~g~W~hv~~t~d~~~g~~~lyvnG~~~~~~~~--~~~~~~~~-~g~l~lG~~----q~~~gg~--~~~-~~~f~G~I~~ 157 (201)
T cd00152 88 SDGAWHHICVTWESTSGIAELWVNGKLSVRKSL--KKGYTVGP-GGSIILGQE----QDSYGGG--FDA-TQSFVGEISD 157 (201)
T ss_pred CCCCEEEEEEEEECCCCcEEEEECCEEeccccc--cCCCEECC-CCeEEEeec----ccCCCCC--CCC-CcceEEEEce
Confidence 4578999999997 456999999998754431 11222332 223443321 1111342 232 3468888888
Q ss_pred EEEe
Q 019909 227 FVLH 230 (334)
Q Consensus 227 ~~v~ 230 (334)
|+|.
T Consensus 158 v~iw 161 (201)
T cd00152 158 VNMW 161 (201)
T ss_pred eEEE
Confidence 8886
No 27
>smart00159 PTX Pentraxin / C-reactive protein / pentaxin family. This family form a doscoid pentameric structure. Human serum amyloid P demonstrates calcium-mediated ligand-binding.
Probab=54.59 E-value=88 Score=28.23 Aligned_cols=72 Identities=18% Similarity=0.309 Sum_probs=41.5
Q ss_pred CCCCcEEEEEEEc--CCeEEEEEcCeeEEEEeccccCCCCCCCCcceEEEEEeeCCCCCCCCCccccCCCCCCEEEEEcE
Q 019909 149 PSDDFHQYSILWT--DSQIIFYIDGIPIREFKRTASMGGDFPAKPMSLYATIWDGSDWATNGGKYRVNYKYAPYVTEFSD 226 (334)
Q Consensus 149 pt~dfHtY~i~Wt--pd~I~fyVDG~~vr~~~~~~~~g~~~P~~Pm~l~lniW~GgdWat~GG~~~~d~s~aPf~a~~~~ 226 (334)
....||...+.|+ ...+.+||||+++.. . .-..+..++. +-.|+|+.- -+.+ ||. .+. ...|.-.+++
T Consensus 88 ~~g~W~hvc~tw~~~~g~~~lyvnG~~~~~-~-~~~~g~~i~~-~G~lvlGq~-qd~~---gg~--f~~-~~~f~G~i~~ 157 (206)
T smart00159 88 SDGKWHHICTTWESSSGIAELWVDGKPGVR-K-GLAKGYTVKP-GGSIILGQE-QDSY---GGG--FDA-TQSFVGEIGD 157 (206)
T ss_pred cCCceEEEEEEEECCCCcEEEEECCEEccc-c-cccCCcEECC-CCEEEEEec-ccCC---CCC--CCC-CcceeEEEee
Confidence 3568999999997 456999999998611 1 1111222332 223444431 1222 342 232 3458888888
Q ss_pred EEEe
Q 019909 227 FVLH 230 (334)
Q Consensus 227 ~~v~ 230 (334)
|+|.
T Consensus 158 v~iw 161 (206)
T smart00159 158 LNMW 161 (206)
T ss_pred eEEe
Confidence 8886
No 28
>PHA02724 hydrophobic IMV membrane protein; Provisional
Probab=53.33 E-value=11 Score=27.18 Aligned_cols=20 Identities=30% Similarity=0.499 Sum_probs=18.1
Q ss_pred CeeecchHHHHHHHHHHHhh
Q 019909 1 MVVSYEGCFLLVFSLLAVVA 20 (334)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~ 20 (334)
|+-.||-.+++..+|.|+++
T Consensus 1 MItnYeP~iL~~i~~~al~~ 20 (53)
T PHA02724 1 MISNYEPLLLLVITCCVLLF 20 (53)
T ss_pred CCcccccHHHHHHHHHHHHH
Confidence 78899999999999999883
No 29
>PHA03047 IMV membrane receptor-like protein; Provisional
Probab=53.05 E-value=12 Score=27.15 Aligned_cols=20 Identities=35% Similarity=0.521 Sum_probs=18.1
Q ss_pred CeeecchHHHHHHHHHHHhh
Q 019909 1 MVVSYEGCFLLVFSLLAVVA 20 (334)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~ 20 (334)
|+-.||-.+++..+|.|+++
T Consensus 1 MItnYeP~iL~~i~~~al~~ 20 (53)
T PHA03047 1 MITNYEPLILLGIICIALLA 20 (53)
T ss_pred CCcccccHHHHHHHHHHHHH
Confidence 78899999999999999883
No 30
>PF06269 DUF1029: Protein of unknown function (DUF1029); InterPro: IPR009372 This entry is represented by Vaccinia virus, A14.5L; it is a family of uncharacterised viral proteins.
Probab=50.47 E-value=13 Score=26.87 Aligned_cols=20 Identities=35% Similarity=0.454 Sum_probs=18.1
Q ss_pred CeeecchHHHHHHHHHHHhh
Q 019909 1 MVVSYEGCFLLVFSLLAVVA 20 (334)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~ 20 (334)
|+-.||-.+++..+|.|+++
T Consensus 1 MItnYeP~iL~~i~~~al~~ 20 (53)
T PF06269_consen 1 MITNYEPLILLGIICAALLA 20 (53)
T ss_pred CCcccccHHHHHHHHHHHHH
Confidence 78899999999999999883
No 31
>PF14099 Polysacc_lyase: Polysaccharide lyase; PDB: 3ILR_A 3IKW_A 3INA_A 3IMN_A 3IN9_A 2ZZJ_A.
Probab=48.79 E-value=2e+02 Score=25.78 Aligned_cols=73 Identities=11% Similarity=0.323 Sum_probs=44.3
Q ss_pred cCCCCCCCcEEEEE--EEcC---CeEEEEEcCeeEEEEeccccCCCCCC-CCcceEEEEEeeCCCCCCCCCccccCCCCC
Q 019909 145 LWFDPSDDFHQYSI--LWTD---SQIIFYIDGIPIREFKRTASMGGDFP-AKPMSLYATIWDGSDWATNGGKYRVNYKYA 218 (334)
Q Consensus 145 l~~dpt~dfHtY~i--~Wtp---d~I~fyVDG~~vr~~~~~~~~g~~~P-~~Pm~l~lniW~GgdWat~GG~~~~d~s~a 218 (334)
+...+...||++.| .|.+ ..|..++||++|....... -++ ....++-+.|.-.+ |....+ .....
T Consensus 146 ~~~~~~G~W~~~~i~~~~s~~~~G~~~vw~nG~~v~~~~g~~----~~~~~~~~y~K~GiYr~~-~~~~~~----~~~~~ 216 (224)
T PF14099_consen 146 LGPVERGKWHDFVIHVKWSPDSDGFLEVWLNGKLVVDYKGPT----GYNDDRGPYFKFGIYRSG-WKNDPN----ESDTQ 216 (224)
T ss_dssp CCCS-TTSEEEEEEEEEE-CCCTEEEEEEECCEECCEEEEEE----CECCSSEEEEEEEEEEHC-CHHHSC------SS-
T ss_pred CCCcCCCcEEEEEEEEEECCCCCEEEEEEECCEEEEEEeCCc----eeCCCCcceeEEEEECCC-CcCCCc----ccccE
Confidence 33334578998876 5765 6799999999998888632 244 36778888887543 221111 11111
Q ss_pred CEEEEEcEEEE
Q 019909 219 PYVTEFSDFVL 229 (334)
Q Consensus 219 Pf~a~~~~~~v 229 (334)
.+|++|++
T Consensus 217 ---vy~D~v~~ 224 (224)
T PF14099_consen 217 ---VYYDNVRI 224 (224)
T ss_dssp ---EEEEEEE-
T ss_pred ---EEeccccC
Confidence 78888875
No 32
>PHA02679 ORF091 IMV membrane protein; Provisional
Probab=47.44 E-value=16 Score=26.43 Aligned_cols=19 Identities=26% Similarity=0.424 Sum_probs=17.6
Q ss_pred CeeecchHHHHHHHHHHHh
Q 019909 1 MVVSYEGCFLLVFSLLAVV 19 (334)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~ 19 (334)
|+-+||-.+++..+|.|++
T Consensus 1 MItnYeP~iL~~i~~~al~ 19 (53)
T PHA02679 1 MVSDYDPAVLVLIFCAALA 19 (53)
T ss_pred CCcccccHHHHHHHHHHHH
Confidence 7889999999999999988
No 33
>PF02210 Laminin_G_2: Laminin G domain; InterPro: IPR012680 Laminins are large heterotrimeric glycoproteins involved in basement membrane function []. The laminin globular (G) domain can be found in one to several copies in various laminin family members, including a large number of extracellular proteins. The C terminus of the laminin alpha chain contains a tandem repeat of five laminin G domains, which are critical for heparin-binding and cell attachment activity []. Laminin alpha4 is distributed in a variety of tissues including peripheral nerves, dorsal root ganglion, skeletal muscle and capillaries; in the neuromuscular junction, it is required for synaptic specialisation []. The structure of the laminin-G domain has been predicted to resemble that of pentraxin []. Laminin G domains can vary in their function, and a variety of binding functions have been ascribed to different LamG modules. For example, the laminin alpha1 and alpha2 chains each have five C-teminal laminin G domains, where only domains LG4 and LG5 contain binding sites for heparin, sulphatides and the cell surface receptor dystroglycan []. Laminin G-containing proteins appear to have a wide variety of roles in cell adhesion, signalling, migration, assembly and differentiation. This entry represents one subtype of laminin G domains, which is sometimes found in association with thrombospondin-type laminin G domains (IPR012679 from INTERPRO).; PDB: 3POY_A 3QCW_B 3R05_B 3ASI_A 3MW4_B 3MW3_A 1QU0_D 1DYK_A 1OKQ_A 3SH4_A ....
Probab=47.41 E-value=1.4e+02 Score=23.43 Aligned_cols=74 Identities=14% Similarity=0.208 Sum_probs=46.5
Q ss_pred CCCcEEEEEEEcCCeEEEEEcCeeEEEEeccccCCCCCCCCcceEEEEEeeCCCCCCCCCccccCCCCCCEEEEEcEEEE
Q 019909 150 SDDFHQYSILWTDSQIIFYIDGIPIREFKRTASMGGDFPAKPMSLYATIWDGSDWATNGGKYRVNYKYAPYVTEFSDFVL 229 (334)
Q Consensus 150 t~dfHtY~i~Wtpd~I~fyVDG~~vr~~~~~~~~g~~~P~~Pm~l~lniW~GgdWat~GG~~~~d~s~aPf~a~~~~~~v 229 (334)
...||+-.|.=....++..||+........... ...-+...-.++.||.-...... ..-....|.--+++++|
T Consensus 53 dg~wh~v~i~~~~~~~~l~Vd~~~~~~~~~~~~-----~~~~~~~~~~l~iGg~~~~~~~~--~~~~~~~f~Gci~~l~v 125 (128)
T PF02210_consen 53 DGQWHKVSISRDGNRVTLTVDGQSVSSESLPSS-----SSDSLDPDGSLYIGGLPESNQPS--GSVDTPGFVGCIRDLRV 125 (128)
T ss_dssp SSSEEEEEEEEETTEEEEEETTSEEEEEESSST-----THHCBESEEEEEESSTTTTCTCT--TSSTTSB-EEEEEEEEE
T ss_pred ccceeEEEEEEeeeeEEEEecCccceEEecccc-----ceecccCCCCEEEecccCccccc--cccCCCCcEEEcCeEEE
Confidence 467999999999999999999999888774321 10123334456777754421111 01115567777888877
Q ss_pred e
Q 019909 230 H 230 (334)
Q Consensus 230 ~ 230 (334)
+
T Consensus 126 n 126 (128)
T PF02210_consen 126 N 126 (128)
T ss_dssp T
T ss_pred C
Confidence 5
No 34
>smart00282 LamG Laminin G domain.
Probab=44.82 E-value=92 Score=25.33 Aligned_cols=29 Identities=10% Similarity=0.211 Sum_probs=24.1
Q ss_pred CCCcEEEEEEEcCCeEEEEEcCeeEEEEe
Q 019909 150 SDDFHQYSILWTDSQIIFYIDGIPIREFK 178 (334)
Q Consensus 150 t~dfHtY~i~Wtpd~I~fyVDG~~vr~~~ 178 (334)
...||.-.|.-....+..+|||.......
T Consensus 61 dg~WH~v~i~~~~~~~~l~VD~~~~~~~~ 89 (135)
T smart00282 61 DGQWHRVAVERNGRRVTLSVDGENPVSGE 89 (135)
T ss_pred CCCEEEEEEEEeCCEEEEEECCCccccEE
Confidence 35899999999999999999997654433
No 35
>PF11191 DUF2782: Protein of unknown function (DUF2782); InterPro: IPR021357 This is a bacterial family of proteins whose function is unknown.
Probab=41.16 E-value=1.3e+02 Score=24.37 Aligned_cols=17 Identities=35% Similarity=0.728 Sum_probs=12.3
Q ss_pred EEeeCCCCCceEEEEEeecCC
Q 019909 81 IKLPADYTAGVVVAFYMSNGD 101 (334)
Q Consensus 81 iKlp~g~s~Gvv~AFwl~s~d 101 (334)
||+.+. .| +.|||+..+
T Consensus 63 IkV~P~--~G--~~Yyl~d~d 79 (105)
T PF11191_consen 63 IKVQPK--AG--PPYYLVDPD 79 (105)
T ss_pred EEEEeC--CC--CCEEEECCC
Confidence 455553 56 999999886
No 36
>PF11131 PhrC_PhrF: Rap-phr extracellular signalling
Probab=32.80 E-value=37 Score=22.75 Aligned_cols=12 Identities=33% Similarity=0.193 Sum_probs=9.9
Q ss_pred HHHHHHHHHHhh
Q 019909 9 FLLVFSLLAVVA 20 (334)
Q Consensus 9 ~~~~~~~~~~~~ 20 (334)
.+|+++|||.++
T Consensus 3 sKl~l~CLA~aa 14 (37)
T PF11131_consen 3 SKLFLICLAAAA 14 (37)
T ss_pred hhHHHHHHHHHH
Confidence 478999999883
No 37
>PF11948 DUF3465: Protein of unknown function (DUF3465); InterPro: IPR021856 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 131 to 151 amino acids in length. This protein has a conserved HWTH sequence motif.
Probab=32.24 E-value=58 Score=28.04 Aligned_cols=24 Identities=25% Similarity=0.360 Sum_probs=16.9
Q ss_pred CCceEEeCCCcEEEEEEecCCCCe
Q 019909 42 HDNLVVHTDGKSVHLSLDERTGSG 65 (334)
Q Consensus 42 ~~nv~~~~~G~~l~L~ld~~~gs~ 65 (334)
.+++++...|..+.|.-|...|++
T Consensus 34 qs~~qv~g~G~V~~vLpdd~~Gsr 57 (131)
T PF11948_consen 34 QSDVQVSGCGTVVKVLPDDNKGSR 57 (131)
T ss_pred ccCeeEeccEEEEEECcccCCCCc
Confidence 467788777876666556677776
No 38
>PF10731 Anophelin: Thrombin inhibitor from mosquito; InterPro: IPR018932 Members of this family are all inhibitors of thrombin, the peptidase that is at the end of the blood coagulation cascade and which creates the clot by cleaving fibrinogen. The interaction between thrombin and fibrinogen involves two different areas of contact - via the thrombin active site and via a second substrate-binding site known as an exosite. The inhibitor acts by blocking the exosite, rather than by interacting with the active site. The inhibitors are from mosquitoes that feed on human blood and which, by inhibiting thrombin, prevent the blood from clotting and keep it flowing.
Probab=27.50 E-value=59 Score=24.29 Aligned_cols=18 Identities=17% Similarity=0.228 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHhh--hcccc
Q 019909 8 CFLLVFSLLAVVA--SGLYR 25 (334)
Q Consensus 8 ~~~~~~~~~~~~~--~~~~~ 25 (334)
++++++||+|+++ -+++|
T Consensus 5 l~vialLC~aLva~vQ~APQ 24 (65)
T PF10731_consen 5 LIVIALLCVALVAIVQSAPQ 24 (65)
T ss_pred hhHHHHHHHHHHHHHhcCcc
Confidence 5788999999983 44444
No 39
>PF02973 Sialidase: Sialidase, N-terminal domain; InterPro: IPR004124 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Sialidases (GH33 from CAZY) hydrolyse alpha-(2->3)-, alpha-(2->6)-, alpha-(2->8)-glycosidic linkages of terminal sialic residues in oligosaccharides, glycoproteins, glycolipids, colominic acid and synthetic substrates. Sialidases may act as pathogenic factors in microbial infections []. The 1.8 A structure of trans-sialidase from leech (Macrobdella decora, Q27701 from SWISSPROT) in complex with 2-deoxy-2, 3-didehydro-NeuAc was solved. The refined model comprising residues 81-769 has a catalytic beta-propeller domain, a N-terminal lectin-like domain and an irregular beta-stranded domain inserted into the catalytic domain [].; GO: 0004308 exo-alpha-sialidase activity, 0005975 carbohydrate metabolic process; PDB: 2JKB_A 2VW2_A 2VW0_A 2VW1_A 2V73_B 2V72_A 1SLI_A 1SLL_A 2SLI_A 4SLI_A ....
Probab=27.26 E-value=4.8e+02 Score=23.77 Aligned_cols=133 Identities=11% Similarity=0.216 Sum_probs=68.8
Q ss_pred eEEEEEEEEEEeeCCCCCceEEEEEeecCCCCC-------CCCCeeeEEEcCCcCCCcceEEEeEEcCCCcCCCCceeEe
Q 019909 72 YLHGFFSASIKLPADYTAGVVVAFYMSNGDMFE-------KNHDEIDFEFLGNIRGKDWRIQTNIYGNGSTSIGREERYN 144 (334)
Q Consensus 72 f~YG~~EariKlp~g~s~Gvv~AFwl~s~d~~~-------~~~dEID~E~lG~~~g~p~~~qTNv~~~G~~~~~~e~~~~ 144 (334)
+.-|.+-++.|.... . -+-|++-.+++... -..++|=+|+.+.....-+...+.+-..+. .
T Consensus 32 L~~gTI~i~Fk~~~~--~-~~~sLfsiSn~~~~n~YF~lyv~~~~~G~E~R~~~~~~~y~~~~~~~v~~~-------~-- 99 (190)
T PF02973_consen 32 LEEGTIVIRFKSDSN--S-GIQSLFSISNSTKGNEYFSLYVSNNKLGFELRDTKGNQNYNFSRPAKVRGG-------Y-- 99 (190)
T ss_dssp -SSEEEEEEEEESS---S-SEEEEEEEE-TSTTSEEEEEEEETTEEEEEEEETTTTCEEEEEESSE--SE-------E--
T ss_pred ccccEEEEEEecCCC--c-ceeEEEEecCCCCccceEEEEEECCEEEEEEecCCCCcccccccccEeccc-------c--
Confidence 446788888886552 4 44566666664311 012267788877654332222222111110 0
Q ss_pred cCCCCCCCcEEEEEEEc--CCeEEEEEcCeeEEEEeccccCCCCCC-C--CcceEEEEEeeCCCCCCCCCccccCCCCCC
Q 019909 145 LWFDPSDDFHQYSILWT--DSQIIFYIDGIPIREFKRTASMGGDFP-A--KPMSLYATIWDGSDWATNGGKYRVNYKYAP 219 (334)
Q Consensus 145 l~~dpt~dfHtY~i~Wt--pd~I~fyVDG~~vr~~~~~~~~g~~~P-~--~Pm~l~lniW~GgdWat~GG~~~~d~s~aP 219 (334)
+ ....||+-++.=+ ..+..+|+||+.+.++.... ..|- + .+=.+.| ||.....-..-|
T Consensus 100 -~--~~~~~~tva~~ad~~~~~ykly~NG~~v~~~~~~~---~~Fis~i~~~n~~~i-----------G~t~R~g~~~y~ 162 (190)
T PF02973_consen 100 -K--NNVTFNTVAFVADSKNKGYKLYVNGELVSTLSSKS---GNFISDIPGLNSVQI-----------GGTNRAGSNAYP 162 (190)
T ss_dssp -T--TEES-EEEEEEEETTTTEEEEEETTCEEEEEEECT---SS-GGGSTT--EEEE-----------SSEEETTEEES-
T ss_pred -c--CCceEEEEEEEEecCCCeEEEEeCCeeEEEecccc---ccHhhcCcCCceEEE-----------cceEeCCCceec
Confidence 1 1346888888876 67799999999988886542 2332 1 1112222 232112223579
Q ss_pred EEEEEcEEEEeeee
Q 019909 220 YVTEFSDFVLHGCS 233 (334)
Q Consensus 220 f~a~~~~~~v~~c~ 233 (334)
|.-.+++++|..++
T Consensus 163 f~G~I~~l~iYn~a 176 (190)
T PF02973_consen 163 FNGTIDNLKIYNRA 176 (190)
T ss_dssp -EEEEEEEEEESS-
T ss_pred ccceEEEEEEEcCc
Confidence 99999999998654
No 40
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=25.18 E-value=54 Score=26.07 Aligned_cols=24 Identities=21% Similarity=0.419 Sum_probs=15.6
Q ss_pred cccCCceEEeCCCcEEEEEEecCCC
Q 019909 39 LFGHDNLVVHTDGKSVHLSLDERTG 63 (334)
Q Consensus 39 ~w~~~nv~~~~~G~~l~L~ld~~~g 63 (334)
-|.|+.+++- .|..+.|++.+...
T Consensus 31 ~f~P~~i~v~-~G~~v~l~~~N~~~ 54 (104)
T PF13473_consen 31 GFSPSTITVK-AGQPVTLTFTNNDS 54 (104)
T ss_dssp EEES-EEEEE-TTCEEEEEEEE-SS
T ss_pred eEecCEEEEc-CCCeEEEEEEECCC
Confidence 5788889885 56667788765533
No 41
>PF12248 Methyltransf_FA: Farnesoic acid 0-methyl transferase; InterPro: IPR022041 This domain, found in farnesoic acid O-methyl transferase, is approximately 110 amino acids in length. Farnesoic acid O-methyl transferase (FAMeT) is the enzyme that catalyses the formation of methyl farnesoate (MF) from farnesoic acid (FA) in the biosynthetic pathway of juvenile hormone (JH) [].
Probab=25.04 E-value=3.5e+02 Score=21.59 Aligned_cols=45 Identities=24% Similarity=0.372 Sum_probs=33.6
Q ss_pred CCCcEEEEEEEcCCeEEEEEcCe--eEEEEeccccCCCCCCCCcceEEEEEee
Q 019909 150 SDDFHQYSILWTDSQIIFYIDGI--PIREFKRTASMGGDFPAKPMSLYATIWD 200 (334)
Q Consensus 150 t~dfHtY~i~Wtpd~I~fyVDG~--~vr~~~~~~~~g~~~P~~Pm~l~lniW~ 200 (334)
..+|..|.|.|....|.+..||. |+.+++.. -|-...|+-++-|.
T Consensus 51 ~~e~~~fwI~~~~G~I~vg~~g~~~pfl~~~Dp------~~~~v~yvGft~w~ 97 (102)
T PF12248_consen 51 PSEFRMFWISWRDGTIRVGRGGEDEPFLEWTDP------EPIPVNYVGFTGWG 97 (102)
T ss_pred CCccEEEEEEECCCEEEEEECCCccEEEEEECC------CCCcccEEEEecCC
Confidence 57899999999999999999987 77777632 14445556556654
No 42
>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=24.59 E-value=1.1e+02 Score=23.26 Aligned_cols=44 Identities=16% Similarity=0.268 Sum_probs=29.4
Q ss_pred ccCCceEEeCCCcEEEEEEecCCCCeeeecceeEEEEEEEEEEeeCC
Q 019909 40 FGHDNLVVHTDGKSVHLSLDERTGSGFVSHDLYLHGFFSASIKLPAD 86 (334)
Q Consensus 40 w~~~nv~~~~~G~~l~L~ld~~~gs~i~Sk~~f~YG~~EariKlp~g 86 (334)
+.+++|.+.-++..|.|+..+..... ...+.+|.|+=++.||..
T Consensus 18 ~~~edI~v~v~~~~L~I~g~~~~~~~---~~~~~~~~f~r~~~LP~~ 61 (83)
T cd06526 18 FKPEELKVKVSDNKLVVEGKHEERED---EHGYVSREFTRRYQLPEG 61 (83)
T ss_pred CCHHHcEEEEECCEEEEEEEEeeecc---CCCEEEEEEEEEEECCCC
Confidence 56677777655667777765433221 234678999999999974
No 43
>cd06482 ACD_HspB10 Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB10 occurs exclusively in the axoneme of sperm cells and may have a cytoskeletal role.
Probab=21.19 E-value=1.6e+02 Score=23.24 Aligned_cols=47 Identities=17% Similarity=0.238 Sum_probs=28.3
Q ss_pred ccCCceEEeCCCcEEEEEEecCCCCeeeecceeEEEEEEEEEEeeCC
Q 019909 40 FGHDNLVVHTDGKSVHLSLDERTGSGFVSHDLYLHGFFSASIKLPAD 86 (334)
Q Consensus 40 w~~~nv~~~~~G~~l~L~ld~~~gs~i~Sk~~f~YG~~EariKlp~g 86 (334)
+.+++|.+.-.+..|.|+-.+..-..-.....+.||.|+=++.||.+
T Consensus 19 ~~kedI~V~v~~~~L~I~ger~~~~e~~~~~er~~g~F~R~f~LP~~ 65 (87)
T cd06482 19 FEPDQVKVKVKDGKVQVSAERENRYDCLGSKKYSYMNICKEFSLPPG 65 (87)
T ss_pred CCHHHeEEEEECCEEEEEEEEecccccCCccEEEEEEEEEEEECCCC
Confidence 34566666544446777765432111011235789999999999974
No 44
>PF09224 DUF1961: Domain of unknown function (DUF1961); InterPro: IPR015305 Members of this family are found in a set of hypothetical bacterial proteins. Their exact function has not, as yet, been determined. ; PDB: 1OQ1_C.
Probab=20.23 E-value=7.2e+02 Score=23.25 Aligned_cols=59 Identities=20% Similarity=0.457 Sum_probs=36.9
Q ss_pred CCcEEEEEEEcCCeEEEEEcCeeEEEEeccccCCCCCCCCcceEEEEEeeCCCCCCCCCccccCCC-CCCEEEEEcEEEE
Q 019909 151 DDFHQYSILWTDSQIIFYIDGIPIREFKRTASMGGDFPAKPMSLYATIWDGSDWATNGGKYRVNYK-YAPYVTEFSDFVL 229 (334)
Q Consensus 151 ~dfHtY~i~Wtpd~I~fyVDG~~vr~~~~~~~~g~~~P~~Pm~l~lniW~GgdWat~GG~~~~d~s-~aPf~a~~~~~~v 229 (334)
..|+.-.|.=....|.|.|||.+|...+.... ...|. -.+|+ |-.. =+|..|.|+++.|
T Consensus 159 ~~~Yr~~i~K~~~~v~f~In~L~vf~w~Dd~~--~~gPv----------------l~~G~--IGfRqMapl~A~Yrnl~V 218 (218)
T PF09224_consen 159 RGPYRMEIVKDGRTVRFSINGLPVFSWTDDGS--TYGPV----------------LRGGR--IGFRQMAPLVARYRNLEV 218 (218)
T ss_dssp -S-EEEEEEEETTEEEEEETTEEEEEEE--SS--SSSS-------------------SBE--EEEEEETT-EEEEEEEEE
T ss_pred CCCEEEEEEEcCCEEEEEECCEEEEEEEcCCC--ccCCc----------------ccCcE--eeeeccchhhhhhccccC
Confidence 36777788889999999999999999975421 11131 01342 3332 3789999999876
Done!