BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 019910
         (334 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1J0A|A Chain A, Crystal Structure Analysis Of The Acc Deaminase Homologue
 pdb|1J0A|B Chain B, Crystal Structure Analysis Of The Acc Deaminase Homologue
 pdb|1J0A|C Chain C, Crystal Structure Analysis Of The Acc Deaminase Homologue
 pdb|1J0B|A Chain A, Crystal Structure Analysis Of The Acc Deaminase Homologue
           Complexed With Inhiitor
 pdb|1J0B|B Chain B, Crystal Structure Analysis Of The Acc Deaminase Homologue
           Complexed With Inhiitor
 pdb|1J0B|C Chain C, Crystal Structure Analysis Of The Acc Deaminase Homologue
           Complexed With Inhiitor
 pdb|1J0B|D Chain D, Crystal Structure Analysis Of The Acc Deaminase Homologue
           Complexed With Inhiitor
 pdb|1J0B|E Chain E, Crystal Structure Analysis Of The Acc Deaminase Homologue
           Complexed With Inhiitor
 pdb|1J0B|F Chain F, Crystal Structure Analysis Of The Acc Deaminase Homologue
           Complexed With Inhiitor
 pdb|1J0B|G Chain G, Crystal Structure Analysis Of The Acc Deaminase Homologue
           Complexed With Inhiitor
 pdb|1J0B|H Chain H, Crystal Structure Analysis Of The Acc Deaminase Homologue
           Complexed With Inhiitor
 pdb|1J0B|I Chain I, Crystal Structure Analysis Of The Acc Deaminase Homologue
           Complexed With Inhiitor
 pdb|1J0B|J Chain J, Crystal Structure Analysis Of The Acc Deaminase Homologue
           Complexed With Inhiitor
 pdb|1J0B|K Chain K, Crystal Structure Analysis Of The Acc Deaminase Homologue
           Complexed With Inhiitor
 pdb|1J0B|L Chain L, Crystal Structure Analysis Of The Acc Deaminase Homologue
           Complexed With Inhiitor
 pdb|1J0B|M Chain M, Crystal Structure Analysis Of The Acc Deaminase Homologue
           Complexed With Inhiitor
 pdb|1J0B|N Chain N, Crystal Structure Analysis Of The Acc Deaminase Homologue
           Complexed With Inhiitor
 pdb|1J0B|O Chain O, Crystal Structure Analysis Of The Acc Deaminase Homologue
           Complexed With Inhiitor
 pdb|1J0B|P Chain P, Crystal Structure Analysis Of The Acc Deaminase Homologue
           Complexed With Inhiitor
 pdb|1J0B|Q Chain Q, Crystal Structure Analysis Of The Acc Deaminase Homologue
           Complexed With Inhiitor
 pdb|1J0B|R Chain R, Crystal Structure Analysis Of The Acc Deaminase Homologue
           Complexed With Inhiitor
 pdb|1J0B|S Chain S, Crystal Structure Analysis Of The Acc Deaminase Homologue
           Complexed With Inhiitor
 pdb|1J0B|T Chain T, Crystal Structure Analysis Of The Acc Deaminase Homologue
           Complexed With Inhiitor
 pdb|1J0B|U Chain U, Crystal Structure Analysis Of The Acc Deaminase Homologue
           Complexed With Inhiitor
 pdb|1J0B|V Chain V, Crystal Structure Analysis Of The Acc Deaminase Homologue
           Complexed With Inhiitor
 pdb|1J0B|W Chain W, Crystal Structure Analysis Of The Acc Deaminase Homologue
           Complexed With Inhiitor
 pdb|1J0B|X Chain X, Crystal Structure Analysis Of The Acc Deaminase Homologue
           Complexed With Inhiitor
          Length = 325

 Score = 45.1 bits (105), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 40/132 (30%), Positives = 59/132 (44%), Gaps = 14/132 (10%)

Query: 86  ISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIVTDLV 145
           I +L N    +G D+         Y+ RDDL    + GNK RK++ LL          ++
Sbjct: 24  IQYLPNISREIGADV---------YIKRDDLTGLGIGGNKIRKLEYLLGDALSKGADVVI 74

Query: 146 TCGGCQSAHATAVAVSCAERGLKSHLLLRGEQPQILTGYNLISTIYGKVTYVPRTHYAHR 205
           T G   S HA    ++  + GL + L+LRG++   L G  L+  I G  T   R + A  
Sbjct: 75  TVGAVHSNHAFVTGLAAKKLGLDAILVLRGKEE--LKGNYLLDKIMGIET---RVYDAKD 129

Query: 206 IEMLKSYANLVA 217
              L  YA  +A
Sbjct: 130 SFELMKYAEEIA 141


>pdb|4D96|A Chain A, D-Cysteine Desulfhydrase From Salmonella Typhimurium
           Complexed With 1- Amino-1-Carboxycyclopropane (Acc)
 pdb|4D96|B Chain B, D-Cysteine Desulfhydrase From Salmonella Typhimurium
           Complexed With 1- Amino-1-Carboxycyclopropane (Acc)
 pdb|4D96|C Chain C, D-Cysteine Desulfhydrase From Salmonella Typhimurium
           Complexed With 1- Amino-1-Carboxycyclopropane (Acc)
 pdb|4D96|D Chain D, D-Cysteine Desulfhydrase From Salmonella Typhimurium
           Complexed With 1- Amino-1-Carboxycyclopropane (Acc)
 pdb|4D9B|A Chain A, Pyridoxamine 5' Phosphate (Pmp) Bound Form Of Salmonella
           Typhimurium D-Cysteine Desulfhydrase Obtained After
           Co-Crystallization With D- Cycloserine
 pdb|4D9B|B Chain B, Pyridoxamine 5' Phosphate (Pmp) Bound Form Of Salmonella
           Typhimurium D-Cysteine Desulfhydrase Obtained After
           Co-Crystallization With D- Cycloserine
 pdb|4D9B|C Chain C, Pyridoxamine 5' Phosphate (Pmp) Bound Form Of Salmonella
           Typhimurium D-Cysteine Desulfhydrase Obtained After
           Co-Crystallization With D- Cycloserine
 pdb|4D9B|D Chain D, Pyridoxamine 5' Phosphate (Pmp) Bound Form Of Salmonella
           Typhimurium D-Cysteine Desulfhydrase Obtained After
           Co-Crystallization With D- Cycloserine
 pdb|4D9C|A Chain A, Pmp Bound Form Of Salmonella Typhimurium D-Cysteine
           Desulfhydrase Obtained After Co-Crystallization With
           L-Cycloserine
 pdb|4D9C|B Chain B, Pmp Bound Form Of Salmonella Typhimurium D-Cysteine
           Desulfhydrase Obtained After Co-Crystallization With
           L-Cycloserine
 pdb|4D9C|C Chain C, Pmp Bound Form Of Salmonella Typhimurium D-Cysteine
           Desulfhydrase Obtained After Co-Crystallization With
           L-Cycloserine
 pdb|4D9C|D Chain D, Pmp Bound Form Of Salmonella Typhimurium D-Cysteine
           Desulfhydrase Obtained After Co-Crystallization With
           L-Cycloserine
 pdb|4D9E|A Chain A, D-Cysteine Desulfhydrase From Salmonella Typhimurium
           Complexed With L- Cycloserine (Lcs)
 pdb|4D9E|B Chain B, D-Cysteine Desulfhydrase From Salmonella Typhimurium
           Complexed With L- Cycloserine (Lcs)
 pdb|4D9E|C Chain C, D-Cysteine Desulfhydrase From Salmonella Typhimurium
           Complexed With L- Cycloserine (Lcs)
 pdb|4D9E|D Chain D, D-Cysteine Desulfhydrase From Salmonella Typhimurium
           Complexed With L- Cycloserine (Lcs)
 pdb|4D9F|A Chain A, D-Cysteine Desulfhydrase From Salmonella Typhimurium
           Complexed With D- Cycloserine (Dcs)
 pdb|4D9F|B Chain B, D-Cysteine Desulfhydrase From Salmonella Typhimurium
           Complexed With D- Cycloserine (Dcs)
 pdb|4D9F|C Chain C, D-Cysteine Desulfhydrase From Salmonella Typhimurium
           Complexed With D- Cycloserine (Dcs)
 pdb|4D9F|D Chain D, D-Cysteine Desulfhydrase From Salmonella Typhimurium
           Complexed With D- Cycloserine (Dcs)
          Length = 342

 Score = 36.6 bits (83), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 27/82 (32%), Positives = 37/82 (45%), Gaps = 2/82 (2%)

Query: 107 RCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIVTDLVTCGGCQSAHATAVAVSCAERG 166
           R  Y+ RDD+    + GNK RK++ L+          L+T G  QS H    A   A+ G
Sbjct: 47  REIYIKRDDVTPIAMGGNKLRKLEFLVADALREGADTLITAGAIQSNHVRQTAAVAAKLG 106

Query: 167 LKSHLLLRGEQPQILTGYNLIS 188
           L    LL  E P   T  N ++
Sbjct: 107 LHCVALL--ENPIGTTAENYLT 126


>pdb|4D97|A Chain A, Salmonella Typhimurium D-Cysteine Desulfhydrase With D-Ser
           Bound At Active Site
 pdb|4D97|B Chain B, Salmonella Typhimurium D-Cysteine Desulfhydrase With D-Ser
           Bound At Active Site
 pdb|4D97|C Chain C, Salmonella Typhimurium D-Cysteine Desulfhydrase With D-Ser
           Bound At Active Site
 pdb|4D97|D Chain D, Salmonella Typhimurium D-Cysteine Desulfhydrase With D-Ser
           Bound At Active Site
          Length = 346

 Score = 34.3 bits (77), Expect = 0.098,   Method: Compositional matrix adjust.
 Identities = 26/82 (31%), Positives = 36/82 (43%), Gaps = 2/82 (2%)

Query: 107 RCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIVTDLVTCGGCQSAHATAVAVSCAERG 166
           R  Y+ RDD+    + GN  RK++ L+          L+T G  QS H    A   A+ G
Sbjct: 47  REIYIKRDDVTPIAMGGNXLRKLEFLVADALREGADTLITAGAIQSNHVRQTAAVAAKLG 106

Query: 167 LKSHLLLRGEQPQILTGYNLIS 188
           L    LL  E P   T  N ++
Sbjct: 107 LHCVALL--ENPIGTTAENYLT 126


>pdb|4D8T|A Chain A, Crystal Structure Of D-Cysteine Desulfhydrase From
           Salmonella Typhimurium At 2.2 A Resolution
 pdb|4D8T|B Chain B, Crystal Structure Of D-Cysteine Desulfhydrase From
           Salmonella Typhimurium At 2.2 A Resolution
 pdb|4D8T|C Chain C, Crystal Structure Of D-Cysteine Desulfhydrase From
           Salmonella Typhimurium At 2.2 A Resolution
 pdb|4D8T|D Chain D, Crystal Structure Of D-Cysteine Desulfhydrase From
           Salmonella Typhimurium At 2.2 A Resolution
 pdb|4D8U|A Chain A, Crystal Structure Of D-Cysteine Desulfhydrase From
           Salmonella Typhimurium At 3.3 A In Monoclinic Space
           Group With 8 Subunits In The Asymmetric Unit
 pdb|4D8U|B Chain B, Crystal Structure Of D-Cysteine Desulfhydrase From
           Salmonella Typhimurium At 3.3 A In Monoclinic Space
           Group With 8 Subunits In The Asymmetric Unit
 pdb|4D8U|C Chain C, Crystal Structure Of D-Cysteine Desulfhydrase From
           Salmonella Typhimurium At 3.3 A In Monoclinic Space
           Group With 8 Subunits In The Asymmetric Unit
 pdb|4D8U|D Chain D, Crystal Structure Of D-Cysteine Desulfhydrase From
           Salmonella Typhimurium At 3.3 A In Monoclinic Space
           Group With 8 Subunits In The Asymmetric Unit
 pdb|4D8U|E Chain E, Crystal Structure Of D-Cysteine Desulfhydrase From
           Salmonella Typhimurium At 3.3 A In Monoclinic Space
           Group With 8 Subunits In The Asymmetric Unit
 pdb|4D8U|F Chain F, Crystal Structure Of D-Cysteine Desulfhydrase From
           Salmonella Typhimurium At 3.3 A In Monoclinic Space
           Group With 8 Subunits In The Asymmetric Unit
 pdb|4D8U|G Chain G, Crystal Structure Of D-Cysteine Desulfhydrase From
           Salmonella Typhimurium At 3.3 A In Monoclinic Space
           Group With 8 Subunits In The Asymmetric Unit
 pdb|4D8U|H Chain H, Crystal Structure Of D-Cysteine Desulfhydrase From
           Salmonella Typhimurium At 3.3 A In Monoclinic Space
           Group With 8 Subunits In The Asymmetric Unit
 pdb|4D8W|A Chain A, Salmonella Typhimurium D-Cysteine Desulfhydrase Soaked
           With D-Cys Shows Pyruvate Bound 4 A Away From Active
           Site
 pdb|4D8W|B Chain B, Salmonella Typhimurium D-Cysteine Desulfhydrase Soaked
           With D-Cys Shows Pyruvate Bound 4 A Away From Active
           Site
 pdb|4D8W|C Chain C, Salmonella Typhimurium D-Cysteine Desulfhydrase Soaked
           With D-Cys Shows Pyruvate Bound 4 A Away From Active
           Site
 pdb|4D8W|D Chain D, Salmonella Typhimurium D-Cysteine Desulfhydrase Soaked
           With D-Cys Shows Pyruvate Bound 4 A Away From Active
           Site
 pdb|4D92|A Chain A, Salmonella Typhimurium D-Cysteine Desulfhydrase Soaked
           With Beta- Chloro-D-Alanine Shows Pyruvate Bound 4 A
           Away From Active Site
 pdb|4D92|B Chain B, Salmonella Typhimurium D-Cysteine Desulfhydrase Soaked
           With Beta- Chloro-D-Alanine Shows Pyruvate Bound 4 A
           Away From Active Site
 pdb|4D92|C Chain C, Salmonella Typhimurium D-Cysteine Desulfhydrase Soaked
           With Beta- Chloro-D-Alanine Shows Pyruvate Bound 4 A
           Away From Active Site
 pdb|4D92|D Chain D, Salmonella Typhimurium D-Cysteine Desulfhydrase Soaked
           With Beta- Chloro-D-Alanine Shows Pyruvate Bound 4 A
           Away From Active Site
 pdb|4D99|A Chain A, Salmonella Typhimurium D-Cysteine Desulfhydrase With L-Ser
           Bound Non- Covalently At The Active Site
 pdb|4D99|B Chain B, Salmonella Typhimurium D-Cysteine Desulfhydrase With L-Ser
           Bound Non- Covalently At The Active Site
 pdb|4D99|C Chain C, Salmonella Typhimurium D-Cysteine Desulfhydrase With L-Ser
           Bound Non- Covalently At The Active Site
 pdb|4D99|D Chain D, Salmonella Typhimurium D-Cysteine Desulfhydrase With L-Ser
           Bound Non- Covalently At The Active Site
          Length = 342

 Score = 34.3 bits (77), Expect = 0.098,   Method: Compositional matrix adjust.
 Identities = 26/82 (31%), Positives = 36/82 (43%), Gaps = 2/82 (2%)

Query: 107 RCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIVTDLVTCGGCQSAHATAVAVSCAERG 166
           R  Y+ RDD+    + GN  RK++ L+          L+T G  QS H    A   A+ G
Sbjct: 47  REIYIKRDDVTPIAMGGNXLRKLEFLVADALREGADTLITAGAIQSNHVRQTAAVAAKLG 106

Query: 167 LKSHLLLRGEQPQILTGYNLIS 188
           L    LL  E P   T  N ++
Sbjct: 107 LHCVALL--ENPIGTTAENYLT 126


>pdb|1RQX|A Chain A, Crystal Structure Of Acc Deaminase Complexed With
           Inhibitor
 pdb|1RQX|B Chain B, Crystal Structure Of Acc Deaminase Complexed With
           Inhibitor
 pdb|1RQX|C Chain C, Crystal Structure Of Acc Deaminase Complexed With
           Inhibitor
 pdb|1RQX|D Chain D, Crystal Structure Of Acc Deaminase Complexed With
           Inhibitor
 pdb|1TYZ|A Chain A, Crystal Structure Of 1-aminocyclopropane-1-carboyxlate
           Deaminase From Pseudomonas
 pdb|1TYZ|B Chain B, Crystal Structure Of 1-aminocyclopropane-1-carboyxlate
           Deaminase From Pseudomonas
 pdb|1TYZ|C Chain C, Crystal Structure Of 1-aminocyclopropane-1-carboyxlate
           Deaminase From Pseudomonas
 pdb|1TYZ|D Chain D, Crystal Structure Of 1-aminocyclopropane-1-carboyxlate
           Deaminase From Pseudomonas
 pdb|1TZ2|A Chain A, Crystal Structure Of 1-Aminocyclopropane-1-Carboyxlate
           Deaminase Complexed With Acc
 pdb|1TZ2|B Chain B, Crystal Structure Of 1-Aminocyclopropane-1-Carboyxlate
           Deaminase Complexed With Acc
 pdb|1TZ2|C Chain C, Crystal Structure Of 1-Aminocyclopropane-1-Carboyxlate
           Deaminase Complexed With Acc
 pdb|1TZ2|D Chain D, Crystal Structure Of 1-Aminocyclopropane-1-Carboyxlate
           Deaminase Complexed With Acc
 pdb|1TZJ|A Chain A, Crystal Structure Of 1-Aminocyclopropane-1-Carboxylate
           Deaminase Complexed With D-Vinyl Glycine
 pdb|1TZJ|B Chain B, Crystal Structure Of 1-Aminocyclopropane-1-Carboxylate
           Deaminase Complexed With D-Vinyl Glycine
 pdb|1TZJ|C Chain C, Crystal Structure Of 1-Aminocyclopropane-1-Carboxylate
           Deaminase Complexed With D-Vinyl Glycine
 pdb|1TZJ|D Chain D, Crystal Structure Of 1-Aminocyclopropane-1-Carboxylate
           Deaminase Complexed With D-Vinyl Glycine
 pdb|1TZK|A Chain A, Crystal Structure Of
           1-Aminocyclopropane-1-Carboxylate-Deaminase Complexed
           With Alpha-Keto-Butyrate
 pdb|1TZK|B Chain B, Crystal Structure Of
           1-Aminocyclopropane-1-Carboxylate-Deaminase Complexed
           With Alpha-Keto-Butyrate
 pdb|1TZK|C Chain C, Crystal Structure Of
           1-Aminocyclopropane-1-Carboxylate-Deaminase Complexed
           With Alpha-Keto-Butyrate
 pdb|1TZK|D Chain D, Crystal Structure Of
           1-Aminocyclopropane-1-Carboxylate-Deaminase Complexed
           With Alpha-Keto-Butyrate
 pdb|1TZM|A Chain A, Crystal Structure Of Acc Deaminase Complexed With
           Substrate Analog B- Chloro-d-alanine
 pdb|1TZM|B Chain B, Crystal Structure Of Acc Deaminase Complexed With
           Substrate Analog B- Chloro-d-alanine
 pdb|1TZM|C Chain C, Crystal Structure Of Acc Deaminase Complexed With
           Substrate Analog B- Chloro-d-alanine
 pdb|1TZM|D Chain D, Crystal Structure Of Acc Deaminase Complexed With
           Substrate Analog B- Chloro-d-alanine
          Length = 338

 Score = 33.5 bits (75), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 23/65 (35%), Positives = 30/65 (46%), Gaps = 1/65 (1%)

Query: 109 FYVVRDDLLHPLV-NGNKARKMDALLPLLEDHIVTDLVTCGGCQSAHATAVAVSCAERGL 167
            Y  R+D    L   GNK RK++ L+P         LV+ GG QS     VA   A  G+
Sbjct: 34  LYAKREDCNSGLAFGGNKTRKLEYLIPEALAQGCDTLVSIGGIQSNQTRQVAAVAAHLGM 93

Query: 168 KSHLL 172
           K  L+
Sbjct: 94  KCVLV 98


>pdb|1J0E|A Chain A, Acc Deaminase Mutant Reacton Intermediate
 pdb|1J0E|B Chain B, Acc Deaminase Mutant Reacton Intermediate
 pdb|1J0E|C Chain C, Acc Deaminase Mutant Reacton Intermediate
 pdb|1J0E|D Chain D, Acc Deaminase Mutant Reacton Intermediate
          Length = 341

 Score = 33.1 bits (74), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 33/64 (51%), Gaps = 1/64 (1%)

Query: 110 YVVRDDLLHPLV-NGNKARKMDALLPLLEDHIVTDLVTCGGCQSAHATAVAVSCAERGLK 168
           Y  R+D    L   GNK RK++ ++P + +   T LV+ GG QS     VA   A+ G K
Sbjct: 35  YAKREDCNSGLAFGGNKLRKLEYIVPDIVEGDYTHLVSIGGRQSNQTRMVAALAAKLGKK 94

Query: 169 SHLL 172
             L+
Sbjct: 95  CVLI 98


>pdb|1F2D|A Chain A, 1-Aminocyclopropane-1-Carboxylate Deaminase
 pdb|1F2D|B Chain B, 1-Aminocyclopropane-1-Carboxylate Deaminase
 pdb|1F2D|C Chain C, 1-Aminocyclopropane-1-Carboxylate Deaminase
 pdb|1F2D|D Chain D, 1-Aminocyclopropane-1-Carboxylate Deaminase
          Length = 341

 Score = 33.1 bits (74), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 33/64 (51%), Gaps = 1/64 (1%)

Query: 110 YVVRDDLLHPLV-NGNKARKMDALLPLLEDHIVTDLVTCGGCQSAHATAVAVSCAERGLK 168
           Y  R+D    L   GNK RK++ ++P + +   T LV+ GG QS     VA   A+ G K
Sbjct: 35  YAKREDCNSGLAFGGNKLRKLEYIVPDIVEGDYTHLVSIGGRQSNQTRMVAALAAKLGKK 94

Query: 169 SHLL 172
             L+
Sbjct: 95  CVLI 98


>pdb|1J0C|A Chain A, Acc Deaminase Mutated To Catalytic Residue
 pdb|1J0C|B Chain B, Acc Deaminase Mutated To Catalytic Residue
 pdb|1J0C|C Chain C, Acc Deaminase Mutated To Catalytic Residue
 pdb|1J0C|D Chain D, Acc Deaminase Mutated To Catalytic Residue
 pdb|1J0D|A Chain A, Acc Deaminase Mutant Complexed With Acc
 pdb|1J0D|B Chain B, Acc Deaminase Mutant Complexed With Acc
 pdb|1J0D|C Chain C, Acc Deaminase Mutant Complexed With Acc
 pdb|1J0D|D Chain D, Acc Deaminase Mutant Complexed With Acc
          Length = 341

 Score = 31.2 bits (69), Expect = 0.96,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 32/64 (50%), Gaps = 1/64 (1%)

Query: 110 YVVRDDLLHPLV-NGNKARKMDALLPLLEDHIVTDLVTCGGCQSAHATAVAVSCAERGLK 168
           Y  R+D    L   GN  RK++ ++P + +   T LV+ GG QS     VA   A+ G K
Sbjct: 35  YAKREDCNSGLAFGGNTLRKLEYIVPDIVEGDYTHLVSIGGRQSNQTRMVAALAAKLGKK 94

Query: 169 SHLL 172
             L+
Sbjct: 95  CVLI 98


>pdb|2ETW|A Chain A, Principles Of Protein-Dna Recognition Revealed In The
           Structural Analysis Of Ndt80-Mse Dna Complexes
 pdb|2EUV|A Chain A, Principles Of Protein-Dna Recognition Revealed In The
           Structural Analysis Of Ndt80-Mse Dna Complexes
 pdb|2EUW|A Chain A, Structure Of A Ndt80-Dna Complex (Mse Mutant Ma4t)
 pdb|2EUX|A Chain A, Structure Of A Ndt80-Dna Complex (Mse Variant Va4g)
 pdb|2EUZ|A Chain A, Structure Of A Ndt80-Dna Complex (Mse Mutant Mc5t)
 pdb|2EVF|A Chain A, Structure Of A Ndt80-Dna Complex (Mse Mutant Ma6t)
 pdb|2EVG|A Chain A, Structure Of A Ndt80-Dna Complex (Mse Mutant Ma7t)
 pdb|2EVH|A Chain A, Structure Of A Ndt80-Dna Complex (Mse Mutant Ma7g)
 pdb|2EVI|A Chain A, Structure Of A Ndt80-Dna Complex (Mse Mutant Ma8t)
 pdb|2EVJ|A Chain A, Structure Of An Ndt80-Dna Complex (Mse Mutant Ma9c)
          Length = 345

 Score = 28.5 bits (62), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 11/25 (44%), Positives = 17/25 (68%)

Query: 81  GPLGGISFLNNTCPFLGDDMIMRDE 105
           GPLG ++ + NT P L DD++ + E
Sbjct: 1   GPLGSMNEMENTDPVLQDDLVSKYE 25


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.138    0.420 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,776,477
Number of Sequences: 62578
Number of extensions: 341381
Number of successful extensions: 732
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 727
Number of HSP's gapped (non-prelim): 9
length of query: 334
length of database: 14,973,337
effective HSP length: 99
effective length of query: 235
effective length of database: 8,778,115
effective search space: 2062857025
effective search space used: 2062857025
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)