Query 019910
Match_columns 334
No_of_seqs 250 out of 1506
Neff 6.0
Searched_HMMs 46136
Date Fri Mar 29 05:30:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019910.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019910hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG2515 Acd 1-aminocyclopropan 100.0 5.2E-43 1.1E-47 330.8 16.5 216 64-334 4-221 (323)
2 PRK03910 D-cysteine desulfhydr 100.0 2.2E-38 4.7E-43 307.2 22.2 208 86-332 9-222 (331)
3 TIGR01275 ACC_deam_rel pyridox 100.0 4E-38 8.7E-43 302.2 23.5 203 89-331 4-207 (311)
4 cd06449 ACCD Aminocyclopropane 100.0 9.5E-38 2E-42 299.5 21.5 204 93-333 1-214 (307)
5 PRK14045 1-aminocyclopropane-1 100.0 2.2E-37 4.7E-42 300.3 22.2 206 86-331 15-222 (329)
6 TIGR01274 ACC_deam 1-aminocycl 100.0 2.5E-37 5.4E-42 300.7 22.4 210 85-333 7-228 (337)
7 PRK12390 1-aminocyclopropane-1 100.0 5E-37 1.1E-41 298.4 21.4 210 85-333 8-229 (337)
8 PRK08197 threonine synthase; V 100.0 7E-35 1.5E-39 289.2 22.4 239 35-332 28-275 (394)
9 PRK07591 threonine synthase; V 100.0 9.6E-35 2.1E-39 290.6 22.6 238 35-331 39-285 (421)
10 PRK06352 threonine synthase; V 100.0 2.8E-34 6E-39 281.1 19.2 209 64-332 5-220 (351)
11 cd01561 CBS_like CBS_like: Thi 100.0 2.5E-33 5.5E-38 266.7 22.2 190 91-333 1-200 (291)
12 PRK04346 tryptophan synthase s 100.0 1.2E-33 2.7E-38 280.4 19.6 247 26-331 5-263 (397)
13 PRK06381 threonine synthase; V 100.0 3.6E-33 7.9E-38 269.0 22.1 191 88-331 11-210 (319)
14 PRK06260 threonine synthase; V 100.0 4.5E-33 9.7E-38 276.5 23.2 210 62-332 44-262 (397)
15 PRK08329 threonine synthase; V 100.0 3.5E-33 7.6E-38 272.9 21.3 201 63-331 41-248 (347)
16 cd01563 Thr-synth_1 Threonine 100.0 3.1E-33 6.7E-38 269.6 19.9 208 65-332 1-216 (324)
17 COG1171 IlvA Threonine dehydra 100.0 1.4E-33 3.1E-38 273.6 17.5 190 90-333 23-215 (347)
18 PRK06721 threonine synthase; R 100.0 4.5E-33 9.7E-38 272.6 21.2 211 62-332 3-220 (352)
19 PRK05638 threonine synthase; V 100.0 8.3E-33 1.8E-37 278.1 22.6 206 62-331 43-255 (442)
20 PRK10717 cysteine synthase A; 100.0 7E-33 1.5E-37 268.5 20.9 202 87-332 8-215 (330)
21 TIGR01136 cysKM cysteine synth 100.0 1.4E-32 2.9E-37 263.0 22.2 191 91-333 6-203 (299)
22 PLN02618 tryptophan synthase, 100.0 8E-33 1.7E-37 275.4 21.1 252 26-331 13-276 (410)
23 cd06448 L-Ser-dehyd Serine deh 100.0 7.8E-33 1.7E-37 267.3 20.2 189 93-332 2-196 (316)
24 TIGR01139 cysK cysteine syntha 100.0 1.3E-32 2.8E-37 262.8 21.4 193 90-333 5-203 (298)
25 PRK07409 threonine synthase; V 100.0 1.1E-32 2.4E-37 269.6 20.8 213 60-332 4-224 (353)
26 PRK13803 bifunctional phosphor 100.0 1.1E-32 2.3E-37 287.1 21.8 262 11-331 203-475 (610)
27 PRK13028 tryptophan synthase s 100.0 2.1E-32 4.6E-37 272.1 21.7 247 26-330 9-266 (402)
28 PRK07476 eutB threonine dehydr 100.0 1.4E-32 3E-37 265.9 18.2 187 91-332 18-206 (322)
29 cd00640 Trp-synth-beta_II Tryp 100.0 1.3E-31 2.7E-36 248.2 22.2 184 93-328 1-188 (244)
30 TIGR01138 cysM cysteine syntha 100.0 9.5E-32 2.1E-36 256.8 21.9 190 90-332 6-202 (290)
31 PRK06110 hypothetical protein; 100.0 4.1E-32 8.9E-37 262.6 19.2 186 91-332 20-208 (322)
32 PLN00011 cysteine synthase 100.0 5.9E-32 1.3E-36 261.8 19.9 193 89-332 14-213 (323)
33 TIGR00263 trpB tryptophan synt 100.0 1.1E-31 2.3E-36 266.0 21.0 243 30-331 1-255 (385)
34 PRK08526 threonine dehydratase 100.0 7.9E-32 1.7E-36 268.4 19.9 188 91-333 19-208 (403)
35 PRK12483 threonine dehydratase 100.0 1.1E-31 2.3E-36 274.5 20.8 189 91-333 36-226 (521)
36 PLN02569 threonine synthase 100.0 5.4E-31 1.2E-35 267.5 24.9 210 63-331 108-333 (484)
37 PRK11761 cysM cysteine synthas 100.0 3.5E-31 7.6E-36 253.7 21.9 191 89-332 9-206 (296)
38 PRK13802 bifunctional indole-3 100.0 2.1E-31 4.5E-36 279.0 21.7 249 28-331 275-537 (695)
39 TIGR02991 ectoine_eutB ectoine 100.0 3E-31 6.4E-36 256.4 21.2 187 91-332 18-206 (317)
40 PLN02556 cysteine synthase/L-3 100.0 7.2E-31 1.6E-35 258.7 24.3 194 87-332 54-255 (368)
41 TIGR01127 ilvA_1Cterm threonin 100.0 1.5E-31 3.3E-36 263.5 19.4 185 93-332 1-187 (380)
42 cd01562 Thr-dehyd Threonine de 100.0 1.7E-31 3.6E-36 254.6 18.8 188 90-332 15-204 (304)
43 PRK08198 threonine dehydratase 100.0 1.8E-31 4E-36 265.1 19.7 187 91-332 21-209 (404)
44 PRK06382 threonine dehydratase 100.0 1.8E-31 4E-36 265.7 19.7 187 91-332 24-212 (406)
45 TIGR01137 cysta_beta cystathio 100.0 3.1E-31 6.7E-36 266.1 21.1 193 91-332 10-209 (454)
46 PRK06450 threonine synthase; V 100.0 6.1E-31 1.3E-35 256.6 22.4 191 69-331 42-239 (338)
47 TIGR00260 thrC threonine synth 100.0 9.4E-32 2E-36 259.7 16.6 208 65-332 1-219 (328)
48 PLN02970 serine racemase 100.0 3.5E-31 7.7E-36 256.9 20.3 187 91-332 26-214 (328)
49 PRK07048 serine/threonine dehy 100.0 2.8E-31 6.1E-36 256.4 19.3 187 91-332 23-211 (321)
50 TIGR01124 ilvA_2Cterm threonin 100.0 3E-31 6.5E-36 270.5 20.4 189 90-332 15-205 (499)
51 PLN02550 threonine dehydratase 100.0 4.4E-31 9.6E-36 272.4 20.1 188 91-332 108-297 (591)
52 PRK09224 threonine dehydratase 100.0 6.4E-31 1.4E-35 268.5 20.4 188 91-332 19-208 (504)
53 PRK06608 threonine dehydratase 100.0 1.3E-30 2.8E-35 254.2 20.8 186 91-332 22-210 (338)
54 TIGR02079 THD1 threonine dehyd 100.0 1.2E-30 2.7E-35 260.2 20.7 190 89-332 13-207 (409)
55 PRK08638 threonine dehydratase 100.0 1.3E-30 2.9E-35 253.6 19.2 187 91-332 26-214 (333)
56 PRK06815 hypothetical protein; 100.0 2.1E-30 4.6E-35 250.2 19.5 188 91-333 19-208 (317)
57 PLN02565 cysteine synthase 100.0 7.8E-30 1.7E-34 247.2 22.4 195 87-333 10-212 (322)
58 PRK07334 threonine dehydratase 100.0 3.8E-30 8.3E-35 256.0 20.3 188 91-333 22-211 (403)
59 PRK08639 threonine dehydratase 100.0 3.3E-30 7.2E-35 257.8 19.1 192 91-333 24-219 (420)
60 KOG1250 Threonine/serine dehyd 100.0 1.9E-30 4.1E-35 252.2 16.6 187 90-330 64-252 (457)
61 PRK02991 D-serine dehydratase; 100.0 5.6E-30 1.2E-34 257.5 20.2 213 66-332 54-307 (441)
62 PLN03013 cysteine synthase 100.0 1.7E-29 3.7E-34 252.4 22.6 196 86-333 117-320 (429)
63 cd06447 D-Ser-dehyd D-Serine d 100.0 1.1E-29 2.5E-34 252.7 20.2 196 88-332 48-284 (404)
64 TIGR01415 trpB_rel pyridoxal-p 100.0 2.4E-29 5.2E-34 251.6 22.0 246 47-332 31-287 (419)
65 PF00291 PALP: Pyridoxal-phosp 100.0 2E-29 4.4E-34 238.8 19.9 197 87-331 2-203 (306)
66 PLN02356 phosphateglycerate ki 100.0 6.2E-29 1.3E-33 248.1 24.2 217 89-332 50-289 (423)
67 PRK08246 threonine dehydratase 100.0 2.6E-29 5.7E-34 242.1 19.5 183 90-332 21-204 (310)
68 PRK08206 diaminopropionate amm 100.0 3E-29 6.5E-34 249.6 19.8 192 92-332 44-268 (399)
69 cd06446 Trp-synth_B Tryptophan 100.0 4.9E-29 1.1E-33 245.2 21.1 197 92-333 34-241 (365)
70 KOG1251 Serine racemase [Signa 100.0 1.2E-29 2.6E-34 234.0 14.6 187 91-332 24-212 (323)
71 TIGR01747 diampropi_NH3ly diam 100.0 1.2E-28 2.6E-33 243.6 21.3 193 92-333 22-248 (376)
72 TIGR03528 2_3_DAP_am_ly diamin 100.0 2.8E-28 6E-33 242.5 21.0 191 93-332 42-266 (396)
73 PRK08813 threonine dehydratase 100.0 3.3E-28 7.2E-33 238.2 20.7 176 92-332 39-216 (349)
74 PRK12391 tryptophan synthase s 100.0 4.2E-28 9.2E-33 243.1 20.9 249 47-332 41-296 (427)
75 TIGR02035 D_Ser_am_lyase D-ser 100.0 7.6E-28 1.6E-32 241.4 21.6 197 87-332 65-302 (431)
76 TIGR03844 cysteate_syn cysteat 100.0 6.6E-28 1.4E-32 239.9 18.8 207 63-332 42-264 (398)
77 COG0133 TrpB Tryptophan syntha 99.9 7.1E-28 1.5E-32 229.1 12.0 253 27-331 4-260 (396)
78 COG0031 CysK Cysteine synthase 99.9 2.6E-26 5.7E-31 219.3 20.4 193 90-333 9-209 (300)
79 COG0498 ThrC Threonine synthas 99.9 4E-24 8.7E-29 212.7 17.4 225 35-320 26-256 (411)
80 KOG1252 Cystathionine beta-syn 99.8 3.6E-21 7.7E-26 184.8 11.3 195 89-332 49-251 (362)
81 KOG1395 Tryptophan synthase be 99.8 1.2E-20 2.6E-25 181.7 9.3 250 30-331 74-328 (477)
82 KOG1481 Cysteine synthase [Ami 99.8 9.7E-19 2.1E-23 164.6 10.7 200 89-332 46-253 (391)
83 PRK09225 threonine synthase; V 99.6 3.1E-14 6.7E-19 144.4 17.9 172 107-327 96-279 (462)
84 cd01560 Thr-synth_2 Threonine 99.5 2.9E-13 6.2E-18 137.4 19.0 171 107-326 95-280 (460)
85 COG1350 Predicted alternative 99.5 1.5E-13 3.2E-18 132.1 12.1 210 92-333 78-298 (432)
86 COG3048 DsdA D-serine dehydrat 98.6 9.1E-07 2E-11 85.2 13.0 178 107-332 101-310 (443)
87 PRK15408 autoinducer 2-binding 91.8 6.7 0.00014 38.3 15.0 44 131-175 71-114 (336)
88 PF04989 CmcI: Cephalosporin h 60.1 25 0.00053 32.6 6.0 45 280-329 24-69 (206)
89 PF00070 Pyr_redox: Pyridine n 56.2 36 0.00078 25.6 5.5 33 144-178 2-34 (80)
90 PRK06202 hypothetical protein; 56.1 14 0.00031 33.7 3.9 35 296-330 64-98 (232)
91 PF01210 NAD_Gly3P_dh_N: NAD-d 55.9 16 0.00034 31.6 3.9 31 144-176 2-32 (157)
92 TIGR00406 prmA ribosomal prote 54.4 34 0.00075 32.6 6.3 63 260-329 129-191 (288)
93 PF13649 Methyltransf_25: Meth 54.0 13 0.00029 29.1 2.9 31 299-330 4-34 (101)
94 cd06356 PBP1_Amide_Urea_BP_lik 51.6 2.2E+02 0.0048 27.1 15.4 54 110-171 43-96 (334)
95 cd01011 nicotinamidase Nicotin 51.3 72 0.0016 28.6 7.6 41 136-177 133-174 (196)
96 PF11814 DUF3335: Peptidase_C3 50.6 20 0.00043 33.3 3.8 43 137-179 38-80 (207)
97 PF06325 PrmA: Ribosomal prote 50.3 32 0.00069 33.4 5.4 65 258-329 129-193 (295)
98 COG2890 HemK Methylase of poly 48.7 19 0.0004 34.6 3.5 32 297-330 113-144 (280)
99 TIGR03669 urea_ABC_arch urea A 47.8 2.8E+02 0.0062 27.2 15.7 53 111-171 45-97 (374)
100 PRK00517 prmA ribosomal protei 46.6 57 0.0012 30.3 6.4 32 295-329 120-151 (250)
101 PF12831 FAD_oxidored: FAD dep 44.6 29 0.00063 35.0 4.3 32 144-177 2-33 (428)
102 PF03853 YjeF_N: YjeF-related 43.9 1.3E+02 0.0028 26.4 7.9 69 127-197 10-87 (169)
103 PRK13886 conjugal transfer pro 43.3 2.9E+02 0.0063 26.1 11.1 63 260-326 83-151 (241)
104 cd06317 PBP1_ABC_sugar_binding 42.2 2.5E+02 0.0055 25.0 15.7 35 293-329 187-223 (275)
105 PTZ00331 alpha/beta hydrolase; 41.6 1.2E+02 0.0026 27.7 7.5 40 137-177 142-182 (212)
106 cd01012 YcaC_related YcaC rela 40.1 1.1E+02 0.0024 26.2 6.7 41 137-178 84-125 (157)
107 PF00890 FAD_binding_2: FAD bi 39.7 34 0.00074 33.7 3.9 31 144-176 2-32 (417)
108 PLN02464 glycerol-3-phosphate 38.9 52 0.0011 35.2 5.3 33 140-175 71-103 (627)
109 PRK12743 oxidoreductase; Provi 37.6 3.1E+02 0.0067 24.7 11.5 32 142-175 4-35 (256)
110 PF06415 iPGM_N: BPG-independe 37.3 84 0.0018 29.5 5.8 49 128-176 15-72 (223)
111 TIGR00670 asp_carb_tr aspartat 37.2 2.7E+02 0.0059 27.0 9.6 36 142-177 151-187 (301)
112 TIGR00215 lpxB lipid-A-disacch 36.3 87 0.0019 31.1 6.2 42 134-177 83-124 (385)
113 PF13738 Pyr_redox_3: Pyridine 35.4 55 0.0012 28.4 4.2 33 142-176 168-200 (203)
114 COG0503 Apt Adenine/guanine ph 35.4 1.1E+02 0.0024 27.3 6.2 42 130-175 43-85 (179)
115 PF05175 MTS: Methyltransferas 34.8 97 0.0021 26.9 5.6 47 274-329 18-64 (170)
116 PRK06847 hypothetical protein; 34.6 55 0.0012 31.5 4.4 32 142-175 5-36 (375)
117 TIGR03614 RutB pyrimidine util 34.6 89 0.0019 28.7 5.6 40 137-177 147-187 (226)
118 PF02887 PK_C: Pyruvate kinase 34.3 1.3E+02 0.0028 24.4 6.0 42 279-329 7-48 (117)
119 COG0078 ArgF Ornithine carbamo 34.0 1.7E+02 0.0036 28.9 7.4 65 106-177 121-188 (310)
120 PF04198 Sugar-bind: Putative 34.0 1.4E+02 0.0029 28.2 6.8 69 258-333 20-89 (255)
121 PRK15404 leucine ABC transport 33.7 4.6E+02 0.0099 25.5 14.9 35 293-328 216-250 (369)
122 PF12847 Methyltransf_18: Meth 33.6 58 0.0013 25.4 3.7 30 297-330 6-35 (112)
123 PF00185 OTCace: Aspartate/orn 33.3 69 0.0015 27.9 4.3 34 143-176 4-37 (158)
124 cd06305 PBP1_methylthioribose_ 33.1 3.6E+02 0.0077 24.1 16.5 32 295-328 185-218 (273)
125 cd01014 nicotinamidase_related 33.0 99 0.0022 26.4 5.3 42 136-177 94-135 (155)
126 PF05971 Methyltransf_10: Prot 32.8 82 0.0018 30.8 5.2 65 262-329 69-135 (299)
127 PRK12266 glpD glycerol-3-phosp 32.2 54 0.0012 33.9 4.1 32 141-175 7-38 (508)
128 cd01015 CSHase N-carbamoylsarc 32.2 1.1E+02 0.0023 26.8 5.5 40 137-177 110-150 (179)
129 PRK11041 DNA-binding transcrip 32.1 1.2E+02 0.0027 27.9 6.2 34 293-328 213-250 (309)
130 PF00857 Isochorismatase: Isoc 32.0 85 0.0018 26.8 4.7 39 136-175 107-146 (174)
131 cd06320 PBP1_allose_binding Pe 31.6 3.8E+02 0.0083 24.0 16.0 34 293-328 182-217 (275)
132 cd06283 PBP1_RegR_EndR_KdgR_li 31.1 1.4E+02 0.003 26.6 6.1 34 293-328 178-215 (267)
133 cd06308 PBP1_sensor_kinase_lik 31.0 3.9E+02 0.0085 23.9 17.0 35 293-329 182-218 (270)
134 TIGR01316 gltA glutamate synth 31.0 1.6E+02 0.0034 29.9 7.1 34 142-177 273-306 (449)
135 COG1609 PurR Transcriptional r 30.3 5.1E+02 0.011 25.1 15.2 32 294-327 238-273 (333)
136 PF01134 GIDA: Glucose inhibit 30.1 74 0.0016 32.3 4.5 29 144-174 2-30 (392)
137 PRK07121 hypothetical protein; 30.0 65 0.0014 33.0 4.2 32 141-175 21-52 (492)
138 PRK11440 putative hydrolase; P 30.0 1.2E+02 0.0026 26.7 5.5 46 128-176 111-156 (188)
139 PRK08274 tricarballylate dehyd 29.7 65 0.0014 32.5 4.1 32 141-175 5-36 (466)
140 cd06294 PBP1_ycjW_transcriptio 29.6 1.5E+02 0.0032 26.5 6.1 35 292-328 182-220 (270)
141 COG1597 LCB5 Sphingosine kinas 29.4 1.1E+02 0.0023 29.7 5.3 36 294-332 59-94 (301)
142 COG2242 CobL Precorrin-6B meth 29.2 65 0.0014 29.4 3.6 35 292-328 32-66 (187)
143 COG0026 PurK Phosphoribosylami 29.0 92 0.002 31.5 4.9 33 143-177 3-35 (375)
144 PF13478 XdhC_C: XdhC Rossmann 29.0 69 0.0015 27.4 3.5 31 145-177 2-32 (136)
145 cd06326 PBP1_STKc_like Type I 29.0 4.8E+02 0.01 24.3 15.3 37 294-331 192-228 (336)
146 PRK09126 hypothetical protein; 28.9 69 0.0015 31.1 4.0 32 144-177 6-37 (392)
147 PF13679 Methyltransf_32: Meth 28.7 2.3E+02 0.005 23.7 6.8 37 294-330 25-63 (141)
148 cd06293 PBP1_LacI_like_11 Liga 28.5 1.6E+02 0.0035 26.5 6.1 35 292-328 176-214 (269)
149 KOG1529 Mercaptopyruvate sulfu 28.4 1E+02 0.0022 30.1 4.9 45 280-324 221-266 (286)
150 TIGR00740 methyltransferase, p 28.3 97 0.0021 28.3 4.7 31 297-329 58-88 (239)
151 PF02737 3HCDH_N: 3-hydroxyacy 28.2 1E+02 0.0022 27.4 4.6 27 147-175 5-31 (180)
152 PRK06481 fumarate reductase fl 27.9 69 0.0015 33.1 4.0 31 141-174 62-92 (506)
153 COG1879 RbsB ABC-type sugar tr 27.8 5.2E+02 0.011 24.3 15.6 43 132-175 83-125 (322)
154 cd06316 PBP1_ABC_sugar_binding 27.6 1.2E+02 0.0027 27.9 5.3 44 279-328 176-220 (294)
155 cd06274 PBP1_FruR Ligand bindi 27.6 1.8E+02 0.0038 26.1 6.2 35 293-329 178-216 (264)
156 PRK14804 ornithine carbamoyltr 27.6 2.2E+02 0.0048 27.7 7.3 36 142-178 154-189 (311)
157 PF01494 FAD_binding_3: FAD bi 27.5 93 0.002 29.0 4.5 34 143-178 3-36 (356)
158 PRK10401 DNA-binding transcrip 27.3 1.6E+02 0.0035 27.9 6.2 35 292-328 236-274 (346)
159 PRK13369 glycerol-3-phosphate 27.3 72 0.0016 32.8 4.0 33 141-176 7-39 (502)
160 PRK00779 ornithine carbamoyltr 27.2 4.1E+02 0.0088 25.8 8.9 34 143-177 154-187 (304)
161 PRK10727 DNA-binding transcrip 27.1 1.6E+02 0.0035 27.9 6.1 34 292-327 236-273 (343)
162 PF00107 ADH_zinc_N: Zinc-bind 27.0 3.2E+02 0.007 21.7 8.9 18 155-172 3-20 (130)
163 cd06349 PBP1_ABC_ligand_bindin 27.0 5.3E+02 0.012 24.2 15.9 35 293-328 190-224 (340)
164 TIGR01813 flavo_cyto_c flavocy 27.0 74 0.0016 31.8 3.9 29 144-174 2-31 (439)
165 COG0159 TrpA Tryptophan syntha 26.6 3.2E+02 0.0068 26.4 7.9 53 127-180 109-161 (265)
166 cd01543 PBP1_XylR Ligand-bindi 26.6 1.7E+02 0.0037 26.3 6.0 35 293-329 171-209 (265)
167 TIGR01307 pgm_bpd_ind 2,3-bisp 26.5 1.8E+02 0.004 30.5 6.7 48 129-176 94-150 (501)
168 cd06280 PBP1_LacI_like_4 Ligan 26.5 1.8E+02 0.0039 26.1 6.1 35 292-328 171-209 (263)
169 COG2216 KdpB High-affinity K+ 26.4 1.2E+02 0.0026 32.4 5.2 77 109-201 442-519 (681)
170 PLN02743 nicotinamidase 26.4 1.1E+02 0.0024 28.7 4.7 39 136-175 146-193 (239)
171 cd06290 PBP1_LacI_like_9 Ligan 26.4 1.7E+02 0.0038 26.1 6.0 35 292-328 175-213 (265)
172 PF00106 adh_short: short chai 26.2 3.7E+02 0.008 22.1 10.3 33 143-176 2-34 (167)
173 COG0683 LivK ABC-type branched 26.2 6.1E+02 0.013 24.6 14.2 49 276-331 192-240 (366)
174 PRK11727 23S rRNA mA1618 methy 26.1 61 0.0013 31.9 3.0 33 295-329 115-147 (321)
175 TIGR01377 soxA_mon sarcosine o 26.1 88 0.0019 30.1 4.2 30 144-175 3-32 (380)
176 cd00431 cysteine_hydrolases Cy 26.0 1.7E+02 0.0036 24.6 5.5 38 137-175 106-144 (161)
177 PF13460 NAD_binding_10: NADH( 25.8 2.4E+02 0.0051 23.9 6.5 30 147-177 4-33 (183)
178 PTZ00287 6-phosphofructokinase 25.7 6.9E+02 0.015 29.8 11.5 48 130-177 918-967 (1419)
179 PRK11101 glpA sn-glycerol-3-ph 25.6 84 0.0018 32.9 4.1 33 141-176 7-39 (546)
180 cd06281 PBP1_LacI_like_5 Ligan 25.6 2E+02 0.0042 25.9 6.2 34 292-327 175-212 (269)
181 KOG0025 Zn2+-binding dehydroge 25.6 2.3E+02 0.005 28.1 6.7 67 126-198 149-216 (354)
182 PRK12834 putative FAD-binding 25.6 85 0.0018 32.7 4.2 30 144-175 7-36 (549)
183 cd06297 PBP1_LacI_like_12 Liga 25.3 1.9E+02 0.0042 26.1 6.1 35 293-329 180-218 (269)
184 PRK06753 hypothetical protein; 25.2 1E+02 0.0022 29.8 4.4 30 144-175 3-32 (373)
185 PF00391 PEP-utilizers: PEP-ut 25.2 1.2E+02 0.0026 23.2 4.0 35 138-175 28-62 (80)
186 PRK03562 glutathione-regulated 25.0 8.7E+02 0.019 26.0 11.8 51 141-199 400-451 (621)
187 KOG2387 CTP synthase (UTP-ammo 24.9 49 0.0011 34.3 2.2 74 122-198 371-475 (585)
188 PRK04176 ribulose-1,5-biphosph 24.7 1.6E+02 0.0035 27.6 5.6 32 143-176 27-58 (257)
189 PF08242 Methyltransf_12: Meth 24.7 28 0.0006 26.9 0.3 30 299-332 3-32 (99)
190 TIGR03702 lip_kinase_YegS lipi 24.6 1.3E+02 0.0028 28.5 5.0 37 294-331 53-90 (293)
191 PF01041 DegT_DnrJ_EryC1: DegT 24.5 3E+02 0.0066 26.7 7.7 67 123-198 24-93 (363)
192 TIGR00138 gidB 16S rRNA methyl 24.5 60 0.0013 28.8 2.5 34 295-330 43-76 (181)
193 TIGR01812 sdhA_frdA_Gneg succi 24.5 85 0.0018 32.8 3.9 30 144-175 2-31 (566)
194 cd06275 PBP1_PurR Ligand-bindi 24.4 2.2E+02 0.0048 25.4 6.3 35 292-328 177-215 (269)
195 cd06284 PBP1_LacI_like_6 Ligan 24.3 2E+02 0.0044 25.5 6.0 33 293-327 176-212 (267)
196 TIGR01292 TRX_reduct thioredox 24.2 1E+02 0.0023 28.2 4.1 30 144-175 3-32 (300)
197 COG2226 UbiE Methylase involve 24.1 51 0.0011 31.1 2.0 50 277-332 37-87 (238)
198 PRK05192 tRNA uridine 5-carbox 24.0 1.1E+02 0.0024 33.0 4.6 31 143-175 6-36 (618)
199 PRK10669 putative cation:proto 24.0 8.4E+02 0.018 25.4 11.9 30 142-173 418-447 (558)
200 PTZ00317 NADP-dependent malic 24.0 2.8E+02 0.0061 29.6 7.5 110 35-175 212-339 (559)
201 PRK07494 2-octaprenyl-6-methox 24.0 87 0.0019 30.4 3.7 31 143-175 9-39 (388)
202 PRK08849 2-octaprenyl-3-methyl 23.9 1E+02 0.0022 30.2 4.2 31 143-175 5-35 (384)
203 PRK07102 short chain dehydroge 23.9 2.9E+02 0.0062 24.6 6.9 32 144-176 4-35 (243)
204 cd01714 ETF_beta The electron 23.9 3.6E+02 0.0078 24.3 7.5 53 273-330 93-149 (202)
205 PRK08641 sdhA succinate dehydr 23.8 1.1E+02 0.0023 32.5 4.6 32 142-175 4-35 (589)
206 PRK11609 nicotinamidase/pyrazi 23.7 1.8E+02 0.004 26.1 5.5 46 128-177 132-178 (212)
207 PRK04284 ornithine carbamoyltr 23.7 2.7E+02 0.0059 27.5 7.1 36 142-177 156-191 (332)
208 COG0492 TrxB Thioredoxin reduc 23.6 1.2E+02 0.0026 29.5 4.6 33 144-178 6-38 (305)
209 TIGR00379 cobB cobyrinic acid 23.6 5.8E+02 0.013 26.0 9.8 46 280-329 102-148 (449)
210 cd06285 PBP1_LacI_like_7 Ligan 23.6 2.4E+02 0.0052 25.2 6.4 34 293-328 175-212 (265)
211 PRK09219 xanthine phosphoribos 23.5 2.8E+02 0.0061 25.0 6.7 62 110-175 19-82 (189)
212 PRK15451 tRNA cmo(5)U34 methyl 23.5 1.3E+02 0.0029 27.7 4.7 33 296-330 60-92 (247)
213 PRK12837 3-ketosteroid-delta-1 23.4 90 0.002 32.3 3.9 29 143-174 9-37 (513)
214 PRK14987 gluconate operon tran 23.4 2.1E+02 0.0046 26.9 6.1 34 292-327 238-275 (331)
215 PRK13054 lipid kinase; Reviewe 23.3 1.3E+02 0.0029 28.6 4.8 38 294-332 57-95 (300)
216 PF08241 Methyltransf_11: Meth 23.3 99 0.0021 22.7 3.2 26 299-329 3-28 (95)
217 smart00046 DAGKc Diacylglycero 23.2 1.5E+02 0.0034 24.4 4.6 36 297-332 52-89 (124)
218 PRK07573 sdhA succinate dehydr 23.0 96 0.0021 33.3 4.1 31 143-175 37-67 (640)
219 PRK12831 putative oxidoreducta 23.0 2.5E+02 0.0055 28.6 7.0 33 142-176 282-314 (464)
220 cd06312 PBP1_ABC_sugar_binding 22.9 5.6E+02 0.012 23.0 16.1 34 293-328 183-218 (271)
221 COG0455 flhG Antiactivator of 22.8 5E+02 0.011 24.7 8.5 26 152-177 17-42 (262)
222 TIGR02634 xylF D-xylose ABC tr 22.8 6.3E+02 0.014 23.5 15.2 44 131-175 45-88 (302)
223 PRK08401 L-aspartate oxidase; 22.7 1.2E+02 0.0025 31.0 4.5 31 143-175 3-33 (466)
224 PRK06617 2-octaprenyl-6-methox 22.6 1E+02 0.0023 30.0 4.0 30 144-175 4-33 (374)
225 TIGR00536 hemK_fam HemK family 22.6 1.9E+02 0.004 27.5 5.6 33 296-330 116-148 (284)
226 PF05368 NmrA: NmrA-like famil 22.5 3.5E+02 0.0076 24.1 7.2 54 147-208 4-58 (233)
227 PF06506 PrpR_N: Propionate ca 22.5 1.2E+02 0.0025 26.7 3.9 40 128-175 113-152 (176)
228 PLN03050 pyridoxine (pyridoxam 22.4 3E+02 0.0064 26.0 6.8 32 142-175 62-96 (246)
229 KOG2904 Predicted methyltransf 22.3 1.6E+02 0.0034 29.0 4.9 31 297-329 151-181 (328)
230 PF13738 Pyr_redox_3: Pyridine 22.1 1.5E+02 0.0033 25.6 4.6 27 147-175 3-29 (203)
231 PF11017 DUF2855: Protein of u 22.1 2.4E+02 0.0052 27.8 6.3 41 294-334 136-176 (314)
232 PRK15317 alkyl hydroperoxide r 22.0 1E+02 0.0023 31.8 4.0 30 143-174 213-242 (517)
233 cd06286 PBP1_CcpB_like Ligand- 22.0 2.4E+02 0.0052 25.1 6.0 35 292-328 174-212 (260)
234 PF05185 PRMT5: PRMT5 arginine 21.9 2.4E+02 0.0053 29.0 6.6 34 296-329 190-223 (448)
235 PRK07057 sdhA succinate dehydr 21.8 1.1E+02 0.0023 32.5 4.1 31 143-175 14-44 (591)
236 COG4123 Predicted O-methyltran 21.8 64 0.0014 30.7 2.2 32 296-329 46-77 (248)
237 cd06337 PBP1_ABC_ligand_bindin 21.7 2.2E+02 0.0047 27.4 6.0 54 110-171 45-98 (357)
238 cd06328 PBP1_SBP_like_2 Peripl 21.6 6.9E+02 0.015 23.6 17.2 55 110-172 44-98 (333)
239 PRK15395 methyl-galactoside AB 21.6 7E+02 0.015 23.7 16.8 34 293-328 225-259 (330)
240 PRK10015 oxidoreductase; Provi 21.6 1.4E+02 0.003 30.1 4.7 35 141-178 6-40 (429)
241 TIGR01744 XPRTase xanthine pho 21.6 3.3E+02 0.0071 24.6 6.7 62 110-175 19-82 (191)
242 COG0300 DltE Short-chain dehyd 21.5 3.3E+02 0.0071 26.2 6.9 56 140-198 6-62 (265)
243 PRK00856 pyrB aspartate carbam 21.4 3.3E+02 0.0073 26.5 7.2 57 143-199 158-221 (305)
244 PRK08287 cobalt-precorrin-6Y C 21.3 1.1E+02 0.0024 26.7 3.6 35 294-330 31-65 (187)
245 cd06313 PBP1_ABC_sugar_binding 21.3 2E+02 0.0044 26.2 5.4 34 293-328 183-217 (272)
246 cd06273 PBP1_GntR_like_1 This 21.2 2.5E+02 0.0054 25.1 5.9 35 292-328 177-215 (268)
247 cd01013 isochorismatase Isocho 21.2 2E+02 0.0042 25.9 5.2 40 137-177 138-178 (203)
248 TIGR01988 Ubi-OHases Ubiquinon 21.2 1.1E+02 0.0024 29.3 3.8 32 144-177 2-33 (385)
249 cd06344 PBP1_ABC_ligand_bindin 21.2 6.9E+02 0.015 23.4 15.1 35 293-328 191-225 (332)
250 cd06319 PBP1_ABC_sugar_binding 21.1 6E+02 0.013 22.7 14.5 42 132-174 47-88 (277)
251 PRK06019 phosphoribosylaminoim 21.1 1.7E+02 0.0037 28.8 5.2 31 143-175 4-34 (372)
252 PRK05868 hypothetical protein; 21.0 1.4E+02 0.003 29.3 4.4 31 143-175 3-33 (372)
253 TIGR00438 rrmJ cell division p 21.0 2.5E+02 0.0055 24.5 5.8 33 296-331 36-68 (188)
254 PRK07538 hypothetical protein; 20.9 1.3E+02 0.0028 29.8 4.2 30 144-175 3-32 (413)
255 TIGR02032 GG-red-SF geranylger 20.9 1.3E+02 0.0028 27.3 4.1 31 145-177 4-34 (295)
256 PTZ00139 Succinate dehydrogena 20.9 1.1E+02 0.0025 32.5 4.1 31 143-175 31-61 (617)
257 PRK08850 2-octaprenyl-6-methox 20.9 1.2E+02 0.0026 29.8 4.1 30 143-174 6-35 (405)
258 PRK08020 ubiF 2-octaprenyl-3-m 20.7 1.2E+02 0.0026 29.5 3.9 31 142-175 7-37 (391)
259 PRK12562 ornithine carbamoyltr 20.7 3.4E+02 0.0074 26.9 7.1 36 142-177 157-192 (334)
260 PRK12842 putative succinate de 20.6 1.2E+02 0.0026 31.9 4.1 29 143-173 11-39 (574)
261 cd06292 PBP1_LacI_like_10 Liga 20.6 2.9E+02 0.0062 24.8 6.2 32 294-327 182-217 (273)
262 cd06295 PBP1_CelR Ligand bindi 20.5 2.8E+02 0.0061 24.9 6.2 36 292-329 185-224 (275)
263 TIGR01790 carotene-cycl lycope 20.5 1.2E+02 0.0026 29.4 3.9 30 144-175 2-31 (388)
264 PF01266 DAO: FAD dependent ox 20.4 1.6E+02 0.0035 27.3 4.7 30 144-175 2-31 (358)
265 PRK03659 glutathione-regulated 20.4 1E+03 0.023 25.2 11.9 49 142-198 401-450 (601)
266 PF01555 N6_N4_Mtase: DNA meth 20.4 2.7E+02 0.0059 24.2 5.9 41 279-329 180-222 (231)
267 PRK13978 ribose-5-phosphate is 20.3 1.8E+02 0.0039 27.4 4.8 33 296-328 22-56 (228)
268 PRK07803 sdhA succinate dehydr 20.3 1.2E+02 0.0026 32.4 4.1 31 143-175 10-40 (626)
269 PRK08626 fumarate reductase fl 20.3 1.2E+02 0.0026 32.7 4.1 31 143-175 7-37 (657)
270 PRK08013 oxidoreductase; Provi 20.3 1.2E+02 0.0027 29.8 4.0 32 144-177 6-37 (400)
271 PRK05866 short chain dehydroge 20.3 7.2E+02 0.016 23.2 11.6 32 142-175 42-73 (293)
272 PRK06139 short chain dehydroge 20.2 7.8E+02 0.017 23.7 11.3 32 143-175 9-40 (330)
273 PRK06185 hypothetical protein; 20.2 1.3E+02 0.0028 29.5 4.1 33 140-175 6-38 (407)
274 PRK10423 transcriptional repre 20.2 2.7E+02 0.0059 25.9 6.1 35 292-328 234-272 (327)
275 COG0076 GadB Glutamate decarbo 20.1 2.6E+02 0.0056 28.9 6.3 57 139-198 118-185 (460)
276 PRK08163 salicylate hydroxylas 20.1 1.5E+02 0.0032 28.9 4.4 32 143-176 6-37 (396)
277 TIGR00292 thiazole biosynthesi 20.1 2.3E+02 0.005 26.6 5.6 33 141-176 22-54 (254)
No 1
>COG2515 Acd 1-aminocyclopropane-1-carboxylate deaminase [Amino acid transport and metabolism]
Probab=100.00 E-value=5.2e-43 Score=330.75 Aligned_cols=216 Identities=26% Similarity=0.258 Sum_probs=183.2
Q ss_pred CceeecccccccccCCCCCCCcccccCCCCcCCCCCccccCCCCeEEEEeCCCCCCCChhHHHHHHHhhhHHHHhcCCCE
Q 019910 64 SKIHQIKLFTTTEKHGGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIVTD 143 (334)
Q Consensus 64 ~~~~~~~ll~~~~~~~~~~~~~~~~~~~~Tp~l~~~~l~~~~g~~lyvKrDDl~~p~~gGnK~RkL~~lL~~a~~~g~~~ 143 (334)
++.++.+|.+. | +||+++++++ +..|.+|||||||++++.+||||+|||++++.+|...|+++
T Consensus 4 ~rf~R~~l~~~-----p---TPiq~L~rls---------~~lg~eiYiKRDD~t~l~~gGNK~RKLefll~eal~~g~dT 66 (323)
T COG2515 4 SRFPRMELIFG-----P---TPIQKLPRLS---------AHLGVEIYIKRDDLTGLAFGGNKIRKLEFLLGEALRKGADT 66 (323)
T ss_pred ccCCccccCCC-----C---ChhhhHHHHH---------HhcCeEEEEEcccccccccCccHHHHHHHHHhhhhhcCCcE
Confidence 35677777775 3 5678887764 44579999999999999899999999999999999999999
Q ss_pred EEEeCCccchHHHHHHHHHHHhCCeEEEEeCCCC-CccccchhHHHHHCC-eEEEECCCChHHHHHHHHHHHHHHhccCC
Q 019910 144 LVTCGGCQSAHATAVAVSCAERGLKSHLLLRGEQ-PQILTGYNLISTIYG-KVTYVPRTHYAHRIEMLKSYANLVAGNNG 221 (334)
Q Consensus 144 VVt~Gg~qsNh~~AvAaaaa~~Gl~~~ivv~~~~-p~~~~gn~~~~~~~G-~V~~v~~~~y~~~~~~~~~~a~~~~~~~g 221 (334)
+||+||+||||..++|++|+++|++|++++++.. .-...||.++++++| ++++++.+.+...+...++
T Consensus 67 lvT~GgiQSNh~r~tAavA~~lGl~~v~ile~~~~~y~~ngn~Ll~~l~G~~~~~~~~~~d~~~~~~~~~---------- 136 (323)
T COG2515 67 LVTYGGIQSNHVRQTAAVAAKLGLKCVLILENIEANYLLNGNLLLSKLMGAEVRAVDAGTDIGINASAEE---------- 136 (323)
T ss_pred EEEecccchhHHHHHHHHHHhcCCcEEEEEeccccccccccchhhhhhcCceEEEecCCCChhhchhhHH----------
Confidence 9999999999999999999999999999999855 114678999999999 9999998764422222221
Q ss_pred CccchhhhhhhhHhhhhhhcccccchhhhhccccccCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhcCCCCCCEEEEcC
Q 019910 222 DVVWCNEIFEASLTAQKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVALLGVFRLLQYLSQDHLLGRKRAIKFVVDA 301 (334)
Q Consensus 222 ~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~IpeGgs~p~a~~G~~~la~EI~eq~~~g~~~~D~Vvvp~ 301 (334)
.++++..++.+||+||+||+||.+.+||++++.||.+|.+.- ..+|.|||++
T Consensus 137 ---------------------------~~e~~~~~g~kpyvIp~GG~~~~g~lGyv~~a~Ei~~Q~~~~-~~fD~vVva~ 188 (323)
T COG2515 137 ---------------------------LAEEVRKQGGKPYVIPEGGSSPLGALGYVRLALEIAEQAEQL-LKFDSVVVAP 188 (323)
T ss_pred ---------------------------HHHHHHhcCCCCcEeccCCcCccccccHHHHHHHHHHHHhhc-cCCCEEEEeC
Confidence 123355668899999999999999999999999999987521 4699999999
Q ss_pred CchhHHHHHHHHHHHcCCCCeEEEEEeccCCCC
Q 019910 302 GTGTTAVGLGLGAICLGCVPLFNTLLVKLSRGF 334 (334)
Q Consensus 302 GtGgt~aGl~~g~k~lg~~~~VigV~~~gs~~~ 334 (334)
|||||.||++.|+..++++++||||.++++..|
T Consensus 189 gs~gT~AGl~~g~~~~~~~~~ViG~~v~~~~~~ 221 (323)
T COG2515 189 GSGGTHAGLLVGLAQLGPDVEVIGIDVSADPEK 221 (323)
T ss_pred CCcchHHHHHHHhhhccCCCceEEEeecCCHHH
Confidence 999999999999999999999999999988653
No 2
>PRK03910 D-cysteine desulfhydrase; Validated
Probab=100.00 E-value=2.2e-38 Score=307.24 Aligned_cols=208 Identities=26% Similarity=0.317 Sum_probs=175.0
Q ss_pred ccccCCCCcCCCCCccccCCCCeEEEEeCCCCCCCChhHHHHHHHhhhHHHHhcCCCEEEEeCCccchHHHHHHHHHHHh
Q 019910 86 ISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIVTDLVTCGGCQSAHATAVAVSCAER 165 (334)
Q Consensus 86 ~~~~~~~Tp~l~~~~l~~~~g~~lyvKrDDl~~p~~gGnK~RkL~~lL~~a~~~g~~~VVt~Gg~qsNh~~AvAaaaa~~ 165 (334)
+....+.||++..+.+++..|.+||+|+||+|++..||||+|++.+++..+++.|.++|||+|+++|||++|+|++|+.+
T Consensus 9 ~~~~~~~TPl~~~~~l~~~~g~~i~~K~E~lnp~g~gs~K~R~~~~~l~~a~~~g~~~vvt~g~s~gN~g~alA~~a~~~ 88 (331)
T PRK03910 9 LELAGLPTPLEPLPRLSAALGPDIYIKRDDLTGLALGGNKTRKLEFLLADALAQGADTLITAGAIQSNHARQTAAAAAKL 88 (331)
T ss_pred ccccCCCCCceEhhhhhHhhCCcEEEEeccCCCCCCCchHHHHHHHHHHHHHHcCCCEEEEcCcchhHHHHHHHHHHHHh
Confidence 56678889999998888878899999999998665689999999999999999999999999888999999999999999
Q ss_pred CCeEEEEeCCCCCcccc-----chhHHHHHCC-eEEEECCCChHHHHHHHHHHHHHHhccCCCccchhhhhhhhHhhhhh
Q 019910 166 GLKSHLLLRGEQPQILT-----GYNLISTIYG-KVTYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASLTAQKS 239 (334)
Q Consensus 166 Gl~~~ivv~~~~p~~~~-----gn~~~~~~~G-~V~~v~~~~y~~~~~~~~~~a~~~~~~~g~~~w~~~~~~~~~~~~~~ 239 (334)
|++|++|||+..+..+. +|...++.|| +|+.++.. ++..+.....+
T Consensus 89 G~~~~i~vp~~~~~~~~~~~~~~~~~~~~~~Ga~vi~~~~~--~~~~~~~~~~a-------------------------- 140 (331)
T PRK03910 89 GLKCVLLLENPVPTEAENYLANGNVLLDDLFGAEIHVVPAG--TDMDAQLEELA-------------------------- 140 (331)
T ss_pred CCcEEEEEcCCCCcccccccCCCcHHHHHHcCCEEEEeCcc--chHHHHHHHHH--------------------------
Confidence 99999999998775433 6888999999 99999864 22222222111
Q ss_pred hcccccchhhhhccccccCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhcCCCCCCEEEEcCCchhHHHHHHHHHHHcCC
Q 019910 240 RASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVALLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGLGAICLGC 319 (334)
Q Consensus 240 ~~~~~~~~~~~~~l~~~~~~~y~IpeGgs~p~a~~G~~~la~EI~eq~~~g~~~~D~Vvvp~GtGgt~aGl~~g~k~lg~ 319 (334)
+++....+..|++|+|+.|+.+..|+.+++.||++|+......||+||+|+|||||++|++++++.+++
T Consensus 141 -----------~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~Ei~~q~~~~~~~~d~vv~~vGtGgt~~Gi~~~~k~~~~ 209 (331)
T PRK03910 141 -----------EELRAQGRRPYVIPVGGSNALGALGYVACALEIAQQLAEGGVDFDAVVVASGSGGTHAGLAAGLAALGP 209 (331)
T ss_pred -----------HHHHHcCCceEEECCCCCCchhHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCcHHHHHHHHHHHHHhCC
Confidence 113333446788999999999999999999999999842112599999999999999999999999999
Q ss_pred CCeEEEEEeccCC
Q 019910 320 VPLFNTLLVKLSR 332 (334)
Q Consensus 320 ~~~VigV~~~gs~ 332 (334)
+++||||++.++.
T Consensus 210 ~~~vigVe~~~~~ 222 (331)
T PRK03910 210 DIPVIGVTVSRSA 222 (331)
T ss_pred CCeEEEEEecCCH
Confidence 9999999998875
No 3
>TIGR01275 ACC_deam_rel pyridoxal phosphate-dependent enzymes, D-cysteine desulfhydrase family. This model represents a family of pyridoxal phosphate-dependent enzymes closely related to (and often designated as putative examples of) 1-aminocyclopropane-1-carboxylate deaminase. It appears that members of this family include both D-cysteine desulfhydrase (EC 4.4.1.15) and 1-aminocyclopropane-1-carboxylate deaminase (EC 3.5.99.7).
Probab=100.00 E-value=4e-38 Score=302.22 Aligned_cols=203 Identities=24% Similarity=0.295 Sum_probs=168.5
Q ss_pred cCCCCcCCCCCccccCCCCeEEEEeCCCCCCCChhHHHHHHHhhhHHHHhcCCCEEEEeCCccchHHHHHHHHHHHhCCe
Q 019910 89 LNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIVTDLVTCGGCQSAHATAVAVSCAERGLK 168 (334)
Q Consensus 89 ~~~~Tp~l~~~~l~~~~g~~lyvKrDDl~~p~~gGnK~RkL~~lL~~a~~~g~~~VVt~Gg~qsNh~~AvAaaaa~~Gl~ 168 (334)
...-||++..+.+++..|.+||+||||+|++.+||||+|++.+++..++++|.++||++|+++|||++|+|++|+++|++
T Consensus 4 ~~~~TPl~~~~~l~~~~g~~l~~K~E~l~p~~~gs~K~R~~~~~l~~a~~~g~~~vv~~g~ssGN~g~alA~~a~~~G~~ 83 (311)
T TIGR01275 4 IPWPTPIQYLPRISREIGAEIYIKRDDLTGLGIGGNKIRKLEYLLADALSKGADTVITVGAIQSNHARATALAAKKLGLD 83 (311)
T ss_pred CCCCCcceechhhhhhcCCeEEEEeccCcCCCCCchhHHHHHHHHHHHHHcCCCEEEEcCCchhHHHHHHHHHHHHhCCc
Confidence 44558888887777777889999999997543589999999999999999999999999888999999999999999999
Q ss_pred EEEEeCCCCCccccchhHHHHHCC-eEEEECCCChHHHHHHHHHHHHHHhccCCCccchhhhhhhhHhhhhhhcccccch
Q 019910 169 SHLLLRGEQPQILTGYNLISTIYG-KVTYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASLTAQKSRASCLGQM 247 (334)
Q Consensus 169 ~~ivv~~~~p~~~~gn~~~~~~~G-~V~~v~~~~y~~~~~~~~~~a~~~~~~~g~~~w~~~~~~~~~~~~~~~~~~~~~~ 247 (334)
|++|||++.+. ..|..+++.|| +|+.+++..|++..+...+.+
T Consensus 84 ~~ivvp~~~~~--~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~~~~~---------------------------------- 127 (311)
T TIGR01275 84 AVLVLREKEEL--NGNLLLDKLMGAETRVYSAEEYFEIMKYAEELA---------------------------------- 127 (311)
T ss_pred eEEEecCCccC--CCCHHHHHHcCCEEEEECchhhhhhHHHHHHHH----------------------------------
Confidence 99999985432 24667789999 999998655665444332211
Q ss_pred hhhhccccccCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhcCCCCCCEEEEcCCchhHHHHHHHHHHHcCCCCeEEEEE
Q 019910 248 DAHKGIDNCRKKVLIVNEGAGDAVALLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGLGAICLGCVPLFNTLL 327 (334)
Q Consensus 248 ~~~~~l~~~~~~~y~IpeGgs~p~a~~G~~~la~EI~eq~~~g~~~~D~Vvvp~GtGgt~aGl~~g~k~lg~~~~VigV~ 327 (334)
+++...++++|++|+++.||.+..|+++++.||++|+. ++..+|+||+|+|||||++|++++++.++++++||||+
T Consensus 128 ---~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~EI~~q~~-~~~~~D~vv~~vGtGgt~~Gi~~~lk~~~~~~~vigV~ 203 (311)
T TIGR01275 128 ---EELEKEGRKPYVIPVGGSNSLGTLGYVEAVLEIATQLE-SEVKFDSIVVAAGSGGTIAGLSLGLSILNEDIRPVGVA 203 (311)
T ss_pred ---HHHHhcCCCeEEECCCCCcHHHHHHHHHHHHHHHHHHh-cCCCCCEEEEeCCcHHHHHHHHHHHHHhCCCCcEEEEE
Confidence 11222344678999999999999999999999999984 23469999999999999999999999999999999999
Q ss_pred eccC
Q 019910 328 VKLS 331 (334)
Q Consensus 328 ~~gs 331 (334)
+.++
T Consensus 204 ~~~~ 207 (311)
T TIGR01275 204 VGRF 207 (311)
T ss_pred eccc
Confidence 8654
No 4
>cd06449 ACCD Aminocyclopropane-1-carboxylate deaminase (ACCD): Pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of 1-aminocyclopropane-L-carboxylate (ACC), a precursor of the plant hormone ethylene, to alpha-ketobutyrate and ammonia.
Probab=100.00 E-value=9.5e-38 Score=299.55 Aligned_cols=204 Identities=25% Similarity=0.246 Sum_probs=165.8
Q ss_pred CcCCCCCccccCC--CCeEEEEeCCCCCCC-ChhHHHHHHHhhhHHHHhcCCCEEEEeCCccchHHHHHHHHHHHhCCeE
Q 019910 93 CPFLGDDMIMRDE--DRCFYVVRDDLLHPL-VNGNKARKMDALLPLLEDHIVTDLVTCGGCQSAHATAVAVSCAERGLKS 169 (334)
Q Consensus 93 Tp~l~~~~l~~~~--g~~lyvKrDDl~~p~-~gGnK~RkL~~lL~~a~~~g~~~VVt~Gg~qsNh~~AvAaaaa~~Gl~~ 169 (334)
||++..+.+++.. +.+||+||||+|+++ +||||+|++.+++.+++++|.++||++||++|||++|+|++|+++|++|
T Consensus 1 TPl~~~~~l~~~~g~~~~l~~K~E~~np~gsfgs~K~R~~~~~l~~a~~~g~~~vv~~ggs~GN~g~alA~~a~~~G~~~ 80 (307)
T cd06449 1 TPIQYLPRLSEHLGGKVEIYAKRDDCNSGLAFGGNKIRKLEYLLPDALAKGADTLVTVGGIQSNHTRQVAAVAAKLGLKC 80 (307)
T ss_pred CcccchhHHHHhhCCCCcEEEecccccCCCCccchHHHHHHHHHHHHHHcCCCEEEECCCchhHHHHHHHHHHHHcCCeE
Confidence 6777777777766 579999999997553 5899999999999999999999999998889999999999999999999
Q ss_pred EEEeCCCCCcc-----ccchhHHHHHCC-eEEEECCCChHHHHHHHHHHHHHHhccCCCccchhhhhhhhHhhhhhhccc
Q 019910 170 HLLLRGEQPQI-----LTGYNLISTIYG-KVTYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASLTAQKSRASC 243 (334)
Q Consensus 170 ~ivv~~~~p~~-----~~gn~~~~~~~G-~V~~v~~~~y~~~~~~~~~~a~~~~~~~g~~~w~~~~~~~~~~~~~~~~~~ 243 (334)
++|||++.|.. ..+|..+++.|| +|+.++...++......+..
T Consensus 81 ~i~v~~~~~~~~~~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~~~~------------------------------- 129 (307)
T cd06449 81 VLVQENWVPYSDAVYDRVGNILLSRIMGADVRLVSAGFDIGIRKSFEEA------------------------------- 129 (307)
T ss_pred EEEecCCCCcccccccccccHHHHHHCCCEEEEECCcchhhHHHHHHHH-------------------------------
Confidence 99999977631 246788999999 99999864332211111110
Q ss_pred ccchhhhhccccccCcEEEEcCCCc-chhHHHHHHHHHHHHHHhhhcCCCCCCEEEEcCCchhHHHHHHHHHHHcCCCCe
Q 019910 244 LGQMDAHKGIDNCRKKVLIVNEGAG-DAVALLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGLGAICLGCVPL 322 (334)
Q Consensus 244 ~~~~~~~~~l~~~~~~~y~IpeGgs-~p~a~~G~~~la~EI~eq~~~g~~~~D~Vvvp~GtGgt~aGl~~g~k~lg~~~~ 322 (334)
.+.+....+.+|++|++++ ||.+..|+.+++.||++|+...+..||+||+|+|||||++|++++++.+++.++
T Consensus 130 ------~~~~~~~~~~~~~~~~~~~~~~~~~~G~~t~~~Ei~~q~~~~~~~~d~vv~~~GtGgt~~G~~~~~~~~~~~~~ 203 (307)
T cd06449 130 ------AEEVEAKGGKPYVIPAGGSEHPLGGLGYVGFVLEIAQQEEELGFKFDSIVVCSVTGSTHAGLSVGLAALGRQRR 203 (307)
T ss_pred ------HHHHHHcCCceEEecCCCCCCcccHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCchHHHHHHHHHHHhcCCCCe
Confidence 1112222345688899986 999999999999999999853233599999999999999999999999999999
Q ss_pred EEEEEeccCCC
Q 019910 323 FNTLLVKLSRG 333 (334)
Q Consensus 323 VigV~~~gs~~ 333 (334)
||||++.++..
T Consensus 204 ii~V~~~~~~~ 214 (307)
T cd06449 204 VIGIDASAKPE 214 (307)
T ss_pred EEEEEecCchH
Confidence 99999988753
No 5
>PRK14045 1-aminocyclopropane-1-carboxylate deaminase; Provisional
Probab=100.00 E-value=2.2e-37 Score=300.30 Aligned_cols=206 Identities=25% Similarity=0.293 Sum_probs=168.9
Q ss_pred ccccCCCCcCCCCCccccCCCCeEEEEeCCCCCCCChhHHHHHHHhhhHHHHhcCCCEEEEeCCccchHHHHHHHHHHHh
Q 019910 86 ISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIVTDLVTCGGCQSAHATAVAVSCAER 165 (334)
Q Consensus 86 ~~~~~~~Tp~l~~~~l~~~~g~~lyvKrDDl~~p~~gGnK~RkL~~lL~~a~~~g~~~VVt~Gg~qsNh~~AvAaaaa~~ 165 (334)
++..++-||++..+.+++..|++||+||||+|++..||||+||+.+++.++.+.|+++||++|+++|||++|+|++|+++
T Consensus 15 ~~l~~~~TPl~~~~~l~~~~g~~v~~K~E~l~~~~~gg~K~R~~~~~l~~a~~~G~~~vv~~~~ssGN~g~alA~~a~~~ 94 (329)
T PRK14045 15 VELIPWETPIQYLPNISRELGADVYVKRDDLTGLGIGGNKIRKLEYLLGDALSRGADVVITVGAVHSNHAFVTGLAAKKL 94 (329)
T ss_pred cccCCCCCCcccchhhHHHhCCeEEEEcccccCCCCCcchHHHHHhHHHHHHHcCCCEEEEeCccHHHHHHHHHHHHHHc
Confidence 35566778998888888878899999999998764588999999999999999999999998899999999999999999
Q ss_pred CCeEEEEeCCCCCccccchhHHHHHCC-eEEEECCC-ChHHHHHHHHHHHHHHhccCCCccchhhhhhhhHhhhhhhccc
Q 019910 166 GLKSHLLLRGEQPQILTGYNLISTIYG-KVTYVPRT-HYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASLTAQKSRASC 243 (334)
Q Consensus 166 Gl~~~ivv~~~~p~~~~gn~~~~~~~G-~V~~v~~~-~y~~~~~~~~~~a~~~~~~~g~~~w~~~~~~~~~~~~~~~~~~ 243 (334)
|++|++|||.+.+ ..+|..+++.|| +|+.++.. .++.. +...+.
T Consensus 95 G~~~~ivvp~~~~--~~~~~~l~~~~Ga~v~~~~~~~~~~~~-~~~~~~------------------------------- 140 (329)
T PRK14045 95 GLDAVLVLRGKEE--LKGNYLLDKIMGIETRVYEAKDSFELM-KYAEEV------------------------------- 140 (329)
T ss_pred CCeEEEEEeCCCC--CCcCHHHHHHCCCEEEEECCCcccchH-HHHHHH-------------------------------
Confidence 9999999997654 345777889999 99888632 22211 111111
Q ss_pred ccchhhhhccccccCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhcCCCCCCEEEEcCCchhHHHHHHHHHHHcCCCCeE
Q 019910 244 LGQMDAHKGIDNCRKKVLIVNEGAGDAVALLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGLGAICLGCVPLF 323 (334)
Q Consensus 244 ~~~~~~~~~l~~~~~~~y~IpeGgs~p~a~~G~~~la~EI~eq~~~g~~~~D~Vvvp~GtGgt~aGl~~g~k~lg~~~~V 323 (334)
+.++....+++|++|+|++||.+..|+.+.+.||++|+......+|+||+|+|||||++|++++++.++|+++|
T Consensus 141 ------~~~l~~~~~~~~~~p~~~~n~~~~~g~~~~~~EI~~q~~~~~~~~d~vv~~vGtGGt~aGi~~~lk~~~~~~kV 214 (329)
T PRK14045 141 ------AEELKGEGRKPYIIPPGGASPVGTLGYVRAVGEIATQVKKLGVRFDSIVVAVGSGGTLAGLSLGLAILNAEWRV 214 (329)
T ss_pred ------HHHHHhcCCCEEEECCCCCchhHHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCcHHHHHHHHHHHHHhCCCCeE
Confidence 11233344568889999999999999999999999998422236999999999999999999999999999999
Q ss_pred EEEEeccC
Q 019910 324 NTLLVKLS 331 (334)
Q Consensus 324 igV~~~gs 331 (334)
|||++.++
T Consensus 215 igv~~~~~ 222 (329)
T PRK14045 215 VGIAVGSF 222 (329)
T ss_pred EEEEecCC
Confidence 99999763
No 6
>TIGR01274 ACC_deam 1-aminocyclopropane-1-carboxylate deaminase. This pyridoxal phosphate-dependent enzyme degrades 1-aminocyclopropane-1-carboxylate, which in plants is a precursor of the ripening hormone ethylene, to ammonia and alpha-ketoglutarate. This model includes all members of this family for which function has been demonstrated experimentally, but excludes a closely related family often annotated as putative members of this family.
Probab=100.00 E-value=2.5e-37 Score=300.68 Aligned_cols=210 Identities=22% Similarity=0.221 Sum_probs=170.3
Q ss_pred cccccCCCCcCCCCCccccCCCC--eEEEEeCCCCCCC-ChhHHHHHHHhhhHHHHhcCCCEEEEeCCccchHHHHHHHH
Q 019910 85 GISFLNNTCPFLGDDMIMRDEDR--CFYVVRDDLLHPL-VNGNKARKMDALLPLLEDHIVTDLVTCGGCQSAHATAVAVS 161 (334)
Q Consensus 85 ~~~~~~~~Tp~l~~~~l~~~~g~--~lyvKrDDl~~p~-~gGnK~RkL~~lL~~a~~~g~~~VVt~Gg~qsNh~~AvAaa 161 (334)
++++..+-||++..+.+++..|. +||+||||+|++. +||||+||+.+++.+|+++|+++|+++||++|||++|+|++
T Consensus 7 ~~~l~~g~TPl~~~~~l~~~~g~~~~l~~K~E~~n~~~~~gs~K~R~~~~~l~~a~~~G~~~vvs~ggs~gN~g~alA~~ 86 (337)
T TIGR01274 7 RYPLTFGPSPIHPLPRLSQHLGGKVTLYAKREDCNSGLAFGGNKTRKLEYLIPDAQAQGCTTLVSIGGIQSNQTRQVAAV 86 (337)
T ss_pred ccccCCCCCCceEhHhhHHhcCCCceEEEEccCCcCCcCccchHHHHHHHHHHHHHHcCCCEEEECCCCcchHHHHHHHH
Confidence 45677788999999998888764 9999999997653 69999999999999999999999999999999999999999
Q ss_pred HHHhCCeEEEEeCCCCC-c----cccchhHHHHHCC-eEEEECCCChH-HHHHHHHHHHHHHhccCCCccchhhhhhhhH
Q 019910 162 CAERGLKSHLLLRGEQP-Q----ILTGYNLISTIYG-KVTYVPRTHYA-HRIEMLKSYANLVAGNNGDVVWCNEIFEASL 234 (334)
Q Consensus 162 aa~~Gl~~~ivv~~~~p-~----~~~gn~~~~~~~G-~V~~v~~~~y~-~~~~~~~~~a~~~~~~~g~~~w~~~~~~~~~ 234 (334)
|+++|++|++||++..+ . ....|..+++.|| +|+.++.. |+ +.......
T Consensus 87 a~~~Gl~~~iv~~~~~~~~~~~~~~~~~~~~~~~~GA~v~~v~~~-~~~~~~~~~~~----------------------- 142 (337)
T TIGR01274 87 AAHLGMKCVLVQENWVNYSDAVYDRVGNIQLSRIMGADVRLDPDG-FDIGHRNSWER----------------------- 142 (337)
T ss_pred HHHcCCcEEEEeccCCCccccchhccchHHHHHHcCCEEEEeCCc-ccccchHHHHH-----------------------
Confidence 99999999999998543 1 1246888999999 99999853 43 10011100
Q ss_pred hhhhhhcccccchhhhhccccccCcEEEEcCCCc-chhHHHHHHHHHHHHHHhhh-cCCCCCCEEEEcCCchhHHHHHHH
Q 019910 235 TAQKSRASCLGQMDAHKGIDNCRKKVLIVNEGAG-DAVALLGVFRLLQYLSQDHL-LGRKRAIKFVVDAGTGTTAVGLGL 312 (334)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~l~~~~~~~y~IpeGgs-~p~a~~G~~~la~EI~eq~~-~g~~~~D~Vvvp~GtGgt~aGl~~ 312 (334)
+.+++....+..|+||+++. ++.+.+|++++++||.+|.. .+ ..||+||||+|||||++|+++
T Consensus 143 --------------a~~~~~~~~~~~~~i~~~~~~~~~~~~G~~~~~~Ei~eq~~~~~-~~~D~vvv~vGtGgt~aGl~~ 207 (337)
T TIGR01274 143 --------------ALEEVRGAGGKPYPIPAGCSDHPLGGLGFVGFAFEVREQEGELG-FKFDYVVVCSVTGSTQAGMVA 207 (337)
T ss_pred --------------HHHHHHhcCCceEEeCCCCCCCccchhHHHHHHHHHHHHHHhcC-CCCCEEEEeCCchHhHHHHHH
Confidence 00112223345688899855 69999999999999999964 23 369999999999999999999
Q ss_pred HHHHcCCCCeEEEEEeccCCC
Q 019910 313 GAICLGCVPLFNTLLVKLSRG 333 (334)
Q Consensus 313 g~k~lg~~~~VigV~~~gs~~ 333 (334)
+++.++++++||||++.++..
T Consensus 208 ~~~~~~~~~~vigV~~~~~~~ 228 (337)
T TIGR01274 208 GFAADGRKDRVIGIDASATPE 228 (337)
T ss_pred HHHHhCCCCeEEEEEecCCHH
Confidence 999999999999999999854
No 7
>PRK12390 1-aminocyclopropane-1-carboxylate deaminase; Provisional
Probab=100.00 E-value=5e-37 Score=298.36 Aligned_cols=210 Identities=23% Similarity=0.243 Sum_probs=170.8
Q ss_pred cccccCCCCcCCCCCccccCCC--CeEEEEeCCCCCCC-ChhHHHHHHHhhhHHHHhcCCCEEEEeCCccchHHHHHHHH
Q 019910 85 GISFLNNTCPFLGDDMIMRDED--RCFYVVRDDLLHPL-VNGNKARKMDALLPLLEDHIVTDLVTCGGCQSAHATAVAVS 161 (334)
Q Consensus 85 ~~~~~~~~Tp~l~~~~l~~~~g--~~lyvKrDDl~~p~-~gGnK~RkL~~lL~~a~~~g~~~VVt~Gg~qsNh~~AvAaa 161 (334)
++....+-||++..+.+++..| .+||+||||+|+++ +||||+|++.+++.+++++|+++|+++||++|||++|+|++
T Consensus 8 ~~~l~~g~TPL~~~~~l~~~~g~~~~v~~K~E~~n~~~~~gs~K~R~~~~~l~~a~~~G~~~vvs~G~s~GN~g~alA~a 87 (337)
T PRK12390 8 RYPLTFGPTPIHPLKRLSAHLGGKVELYAKREDCNSGLAFGGNKTRKLEYLVPDALAQGADTLVSIGGVQSNHTRQVAAV 87 (337)
T ss_pred ccccCCCCCcceeHHHHHHHhCCCCeEEEEeCCCCCCCCccchhHHHHHHHHHHHHHcCCCEEEEeCCCccHHHHHHHHH
Confidence 4567788999999988888777 79999999997552 59999999999999999999999999999999999999999
Q ss_pred HHHhCCeEEEEeCCCCCc-----cccchhHHHHHCC-eEEEECCCChHH-HHHHHHHHHHHHhccCCCccchhhhhhhhH
Q 019910 162 CAERGLKSHLLLRGEQPQ-----ILTGYNLISTIYG-KVTYVPRTHYAH-RIEMLKSYANLVAGNNGDVVWCNEIFEASL 234 (334)
Q Consensus 162 aa~~Gl~~~ivv~~~~p~-----~~~gn~~~~~~~G-~V~~v~~~~y~~-~~~~~~~~a~~~~~~~g~~~w~~~~~~~~~ 234 (334)
|+++|++|++|+++..|. .+.+|..+++.|| +|+.++.. |+. ..+..+. +
T Consensus 88 a~~~G~~~~iv~~~~~p~~~~~~~~~~~~~~~~~~GA~v~~v~~~-~~~~~~~~~~~-~--------------------- 144 (337)
T PRK12390 88 AAHLGMKCVLVQENWVNYEDAVYDRVGNILLSRIMGADVRLVPDG-FDIGIRKSWED-A--------------------- 144 (337)
T ss_pred HHHcCCeEEEEeCCCCCCccchhhccccHHHHHHCCCEEEEeCCC-cchhHHHHHHH-H---------------------
Confidence 999999999998776553 2456888999999 99999863 421 1011110 0
Q ss_pred hhhhhhcccccchhhhhccccccCcEEEEcCCCc-chhHHHHHHHHHHHHHHhhh-cCCCCCCEEEEcCCchhHHHHHHH
Q 019910 235 TAQKSRASCLGQMDAHKGIDNCRKKVLIVNEGAG-DAVALLGVFRLLQYLSQDHL-LGRKRAIKFVVDAGTGTTAVGLGL 312 (334)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~l~~~~~~~y~IpeGgs-~p~a~~G~~~la~EI~eq~~-~g~~~~D~Vvvp~GtGgt~aGl~~ 312 (334)
.+.+.+...+.|.+|++.. ++.+++||+++++||++|.. +++ .+|+||+|+|||||++|+++
T Consensus 145 ---------------~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~a~Ei~~q~~~~~~-~~d~vvv~vGtGgtlaGi~~ 208 (337)
T PRK12390 145 ---------------LEDVRAAGGKPYAIPAGASDHPLGGLGFVGFAEEVRAQEAELGF-KFDYIVVCSVTGSTQAGMVV 208 (337)
T ss_pred ---------------HHHHHhCCCceEEeCCcCCCCCcccHHHHHHHHHHHHHHHhcCC-CCCEEEEecCcchhHHHHHH
Confidence 0001222346788888855 49999999999999999853 343 59999999999999999999
Q ss_pred HHHHcCCCCeEEEEEeccCCC
Q 019910 313 GAICLGCVPLFNTLLVKLSRG 333 (334)
Q Consensus 313 g~k~lg~~~~VigV~~~gs~~ 333 (334)
+++.++++++||||++.++..
T Consensus 209 ~~k~~~~~~rvigV~~~~~~~ 229 (337)
T PRK12390 209 GFAADGRARRVIGIDASAKPE 229 (337)
T ss_pred HHHhcCCCceEEEEEecCchH
Confidence 999999999999999988753
No 8
>PRK08197 threonine synthase; Validated
Probab=100.00 E-value=7e-35 Score=289.15 Aligned_cols=239 Identities=15% Similarity=0.136 Sum_probs=186.3
Q ss_pred CCceeeeccChHHHHHHHhhhhhhccCCCCceeecccccccccCCCCCCCcccccCCCCcCCCCCccccCCC-CeEEEEe
Q 019910 35 PQGICNVRMSGEELLSRLLDRKWALTSPDSKIHQIKLFTTTEKHGGGPLGGISFLNNTCPFLGDDMIMRDED-RCFYVVR 113 (334)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~Tp~l~~~~l~~~~g-~~lyvKr 113 (334)
-+|...+...++.. .+..+++.+...+...|||.++||. ..+...+++.++.||++..+.+++..| .+||+|+
T Consensus 28 cg~~l~~~~d~~~~-~~~~~~~~~~~~~~~~~ry~~~lp~-----~~~~~~vslgeG~TPL~~~~~l~~~~G~~~l~~K~ 101 (394)
T PRK08197 28 CGKPLLVRYDLEAV-KQAVTREALAGRPANLWRYHELLPV-----RDPEHIVSLGEGMTPLLPLPRLGKALGIGRLWVKD 101 (394)
T ss_pred CCCeeEEEechhhh-hhccchhhhccCCcchhcchhhCCC-----CCCCCCCccCcCCCCceEhHHHHHHhCCCcEEEEe
Confidence 35676666665542 3322333233345679999999997 333445789999999999999888888 5999999
Q ss_pred CCCCCCCChhHHHHHHHhhhHHHHhcCCCEEEEeCCccchHHHHHHHHHHHhCCeEEEEeCCCCCccccchhHHHHHCC-
Q 019910 114 DDLLHPLVNGNKARKMDALLPLLEDHIVTDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGEQPQILTGYNLISTIYG- 192 (334)
Q Consensus 114 DDl~~p~~gGnK~RkL~~lL~~a~~~g~~~VVt~Gg~qsNh~~AvAaaaa~~Gl~~~ivv~~~~p~~~~gn~~~~~~~G- 192 (334)
|++| | +||||+|++.+++..|.+.|.++||+.+ +|||++|+|++|+++|++|+||||.+.++ .+..+++.||
T Consensus 102 E~~n-P-tGSfKdRga~~~i~~a~~~g~~~vv~aS--sGN~g~alA~~aa~~G~~~~v~vp~~~~~---~k~~~~~~~GA 174 (394)
T PRK08197 102 EGLN-P-TGSFKARGLAVGVSRAKELGVKHLAMPT--NGNAGAAWAAYAARAGIRATIFMPADAPE---ITRLECALAGA 174 (394)
T ss_pred CCCC-C-CcCcHHhHHHHHHHHHHHcCCCEEEEeC--CcHHHHHHHHHHHHcCCcEEEEEcCCCCH---HHHHHHHHcCC
Confidence 9995 7 6999999999999999999999999654 59999999999999999999999998765 3678999999
Q ss_pred eEEEECCCChHHHHHHHHHHHHHHhccCCCccchhhhhhhhHhhhhhhcccccchhhhhccccccCcEEEEcCCCcchhH
Q 019910 193 KVTYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASLTAQKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVA 272 (334)
Q Consensus 193 ~V~~v~~~~y~~~~~~~~~~a~~~~~~~g~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~IpeGgs~p~a 272 (334)
+|+.++. .|++..+.+.+ ++.++| .|++ .+..||..
T Consensus 175 ~Vi~v~~-~~~~~~~~a~~----~~~~~g--------------------------------------~~~~-~~~~np~~ 210 (394)
T PRK08197 175 ELYLVDG-LISDAGKIVAE----AVAEYG--------------------------------------WFDV-STLKEPYR 210 (394)
T ss_pred EEEEECC-CHHHHHHHHHH----HHHhcC--------------------------------------cccc-cCCCCccc
Confidence 9999985 46654443322 111111 2222 23345666
Q ss_pred HHHHHHHHHHHHHhhhcCCCCCCEEEEcCCchhHHHHHHHHHHHc-------CCCCeEEEEEeccCC
Q 019910 273 LLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGLGAICL-------GCVPLFNTLLVKLSR 332 (334)
Q Consensus 273 ~~G~~~la~EI~eq~~~g~~~~D~Vvvp~GtGgt~aGl~~g~k~l-------g~~~~VigV~~~gs~ 332 (334)
..|++++++||.+|+ ++..||+||+|+|+|++++|++++|+++ ++.++|++|++.|+.
T Consensus 211 ieG~~t~a~Ei~eQl--~~~~pD~vvvpvG~Gg~~~Gi~~~~k~~~~~g~~~~~~p~ii~Vq~~g~~ 275 (394)
T PRK08197 211 IEGKKTMGLELAEQL--GWRLPDVILYPTGGGVGLIGIWKAFDELEALGWIGGKRPRLVAVQAEGCA 275 (394)
T ss_pred hhcHHHHHHHHHHHc--CCCCCCEEEEeCCChHHHHHHHHHHHHHHHcCCcCCCCCeEEEEEeCCCC
Confidence 677899999999998 5545999999999999999999999998 488999999998873
No 9
>PRK07591 threonine synthase; Validated
Probab=100.00 E-value=9.6e-35 Score=290.65 Aligned_cols=238 Identities=16% Similarity=0.141 Sum_probs=184.0
Q ss_pred CCceeeeccChHHHHHHHhhhhhhccCCCCceeecccccccccCCCCCCCcccccCCCCcCCCCCccccCCC-CeEEEEe
Q 019910 35 PQGICNVRMSGEELLSRLLDRKWALTSPDSKIHQIKLFTTTEKHGGGPLGGISFLNNTCPFLGDDMIMRDED-RCFYVVR 113 (334)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~Tp~l~~~~l~~~~g-~~lyvKr 113 (334)
-+|...++...+.+ .+..+++.+...+...|||.++||. +... .+++.++.||++..+.|++..| .+||+|+
T Consensus 39 cg~~l~~~y~~~~~-~~~~~~~~~~~~~~~~wry~~~lp~-----~~~~-~v~l~eG~TPLv~~~~l~~~lG~~~l~~K~ 111 (421)
T PRK07591 39 CFGPLEVAYDYDAI-RKRVSRESIEAGPKSIWRYRDLLPV-----PADN-PVDLGPGFTPLVKADRLARELGLKNLYIKD 111 (421)
T ss_pred CCCeEEEEechhhh-ccccChhhhhccccchhcchhhCcc-----ccCC-CCcCCCCCCcceEhHHHHHHhCCCcEEEEe
Confidence 45666666654432 2111233333445689999999997 2222 4788999999999999998888 5999999
Q ss_pred CCCCCCCChhHHHHHHHhhhHHHHhcCCCEEEEeCCccchHHHHHHHHHHHhCCeEEEEeCCCCCccccchhHHHHHCC-
Q 019910 114 DDLLHPLVNGNKARKMDALLPLLEDHIVTDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGEQPQILTGYNLISTIYG- 192 (334)
Q Consensus 114 DDl~~p~~gGnK~RkL~~lL~~a~~~g~~~VVt~Gg~qsNh~~AvAaaaa~~Gl~~~ivv~~~~p~~~~gn~~~~~~~G- 192 (334)
|++| | +||||+|++.+++..|.+.|.++||+. | +|||++|+|++|+++|++|+||||...+. +|+.+++.||
T Consensus 112 E~~n-P-tGSfKdRga~~~v~~A~~~g~~~vv~a-S-sGN~g~alA~~aa~~Gl~~~I~vP~~~~~---~k~~~~~~~GA 184 (421)
T PRK07591 112 DSVN-P-THSFKDRVVSVALTAARELGFTTVACA-S-TGNLANSVAAHAARAGLDSCVFIPADLEA---GKIVGTLVYGP 184 (421)
T ss_pred CCCC-C-ccChHHHHHHHHHHHHHHcCCCEEEEe-C-CCHHHHHHHHHHHHcCCCEEEEEcCCCCH---HHHHHHHHcCC
Confidence 9995 7 689999999999999999999999854 3 69999999999999999999999997754 4778899999
Q ss_pred eEEEECCCChHHHHHHHHHHHHHHhccCCCccchhhhhhhhHhhhhhhcccccchhhhhccccccCcEEEEcCCCcchhH
Q 019910 193 KVTYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASLTAQKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVA 272 (334)
Q Consensus 193 ~V~~v~~~~y~~~~~~~~~~a~~~~~~~g~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~IpeGgs~p~a 272 (334)
+|+.|+. .|++..+.+++. +.+ .+..|++. ...+|..
T Consensus 185 ~Vi~v~g-~~d~a~~~a~~~----~~~-------------------------------------~~~~~~~n-~~~~p~~ 221 (421)
T PRK07591 185 TLVAVDG-NYDDVNRLCSEL----ANE-------------------------------------HEGWGFVN-INLRPYY 221 (421)
T ss_pred EEEEECC-CHHHHHHHHHHH----HHh-------------------------------------cCCEEEec-CCCCccc
Confidence 9999985 577654443321 111 11222221 1234445
Q ss_pred HHHHHHHHHHHHHhhhcCCCCCCEEEEcCCchhHHHHHHHHHHHc-------CCCCeEEEEEeccC
Q 019910 273 LLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGLGAICL-------GCVPLFNTLLVKLS 331 (334)
Q Consensus 273 ~~G~~~la~EI~eq~~~g~~~~D~Vvvp~GtGgt~aGl~~g~k~l-------g~~~~VigV~~~gs 331 (334)
..|++++++||++|+ ++..||+||+|+|+||+++|+++||+++ ++.++|++|++.+.
T Consensus 222 ieG~~Tia~Ei~eQl--~~~~pD~iv~pvG~Gg~~~Gv~~g~kel~~~g~i~~~~prii~Vq~~g~ 285 (421)
T PRK07591 222 AEGSKTLGYEVAEQL--GWRLPDQVVAPLASGSLLTKIDKGFQELIKVGLVEDKPVRVFGAQAEGC 285 (421)
T ss_pred ccchHHHHHHHHHHc--CCCCCCEEEEeCCchHHHHHHHHHHHHHHhcCCccCCCceEEEEecCCC
Confidence 567999999999998 5545999999999999999999999998 68899999999874
No 10
>PRK06352 threonine synthase; Validated
Probab=100.00 E-value=2.8e-34 Score=281.13 Aligned_cols=209 Identities=12% Similarity=0.148 Sum_probs=171.3
Q ss_pred CceeecccccccccCCCCCCCcccccCCCCcCCCCCccccCCCCeEEEEeCCCCCCCChhHHHHHHHhhhHHHHhcCCCE
Q 019910 64 SKIHQIKLFTTTEKHGGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIVTD 143 (334)
Q Consensus 64 ~~~~~~~ll~~~~~~~~~~~~~~~~~~~~Tp~l~~~~l~~~~g~~lyvKrDDl~~p~~gGnK~RkL~~lL~~a~~~g~~~ 143 (334)
.+|||.++||. .++...+++..+-||++..+.+++..|.+||+|+|++| | +||||+|++.+++..+.++|.++
T Consensus 5 ~~~ry~~~lp~-----~~~~~~~~l~~G~TPL~~~~~l~~~~g~~l~~K~E~~n-p-tGS~KdR~a~~~i~~a~~~g~~~ 77 (351)
T PRK06352 5 LLEKYKEYLPV-----TDKTPMISLAEGNTPLIPLPNLSKELGVTLYGKYEGLN-P-TGSFKDRGMVMAVAKAKEEGAEA 77 (351)
T ss_pred hHHHHHHhCCC-----CCCcCccccCCCCCCeeEcHhhHHHhCCeEEEEecCCC-C-ccChHHHHHHHHHHHHHHCCCCE
Confidence 47999999997 33332378899999999999988888899999999995 7 69999999999999999999999
Q ss_pred EEEeCCccchHHHHHHHHHHHhCCeEEEEeCCCC-CccccchhHHHHHCC-eEEEECCCChHHHHHHHHHHHHHHhccCC
Q 019910 144 LVTCGGCQSAHATAVAVSCAERGLKSHLLLRGEQ-PQILTGYNLISTIYG-KVTYVPRTHYAHRIEMLKSYANLVAGNNG 221 (334)
Q Consensus 144 VVt~Gg~qsNh~~AvAaaaa~~Gl~~~ivv~~~~-p~~~~gn~~~~~~~G-~V~~v~~~~y~~~~~~~~~~a~~~~~~~g 221 (334)
||+++ +|||+.|+|++|+.+|++|+||||+.. +. .|..+++.|| +|+.++. .|++..+.+++ ++.++
T Consensus 78 vV~aS--sGN~G~AlA~~aa~~G~~~~ivvp~~~~~~---~k~~~~~a~GA~V~~~~~-~~~~~~~~a~~----~~~~~- 146 (351)
T PRK06352 78 VICAS--TGNTSAAAAAYATRAGLKAYIVIPEGKVAL---GKLAQAVMYGADIISIQG-NFDEALKSVRE----LAETE- 146 (351)
T ss_pred EEEEC--CcHHHHHHHHHHHHcCCcEEEEEeCCCCcH---HHHHHHHhcCCEEEEECC-CHHHHHHHHHH----HHHhc-
Confidence 99875 599999999999999999999999863 43 3667889999 9999985 47654443322 11111
Q ss_pred CccchhhhhhhhHhhhhhhcccccchhhhhccccccCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhcCCCCCCEEEEcC
Q 019910 222 DVVWCNEIFEASLTAQKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVALLGVFRLLQYLSQDHLLGRKRAIKFVVDA 301 (334)
Q Consensus 222 ~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~IpeGgs~p~a~~G~~~la~EI~eq~~~g~~~~D~Vvvp~ 301 (334)
..+++ +..||....|+.+++.||.+|+ + ..||+||+|+
T Consensus 147 -------------------------------------~~~~~--~~~n~~~~~G~~t~~~EI~~Q~--~-~~~D~vvv~v 184 (351)
T PRK06352 147 -------------------------------------AVTLV--NSVNPYRLEGQKTAAFEICEQL--G-SAPDVLAIPV 184 (351)
T ss_pred -------------------------------------Ccccc--cCCCccceeeHHHHHHHHHHHc--C-CCCCEEEEEC
Confidence 11222 2347777888999999999998 3 3699999999
Q ss_pred CchhHHHHHHHHHHHcCCC-----CeEEEEEeccCC
Q 019910 302 GTGTTAVGLGLGAICLGCV-----PLFNTLLVKLSR 332 (334)
Q Consensus 302 GtGgt~aGl~~g~k~lg~~-----~~VigV~~~gs~ 332 (334)
|||||++|++++|+++++. ++||||++.++.
T Consensus 185 G~GG~~~Gi~~~lk~~~~~~~~~~~~vi~Vep~g~~ 220 (351)
T PRK06352 185 GNAGNISAYWKGFKEWNEAKASGLPRMHGFEAEGAA 220 (351)
T ss_pred CchHHHHHHHHHHHHHHhcCCCCCCEEEEEeeCCCC
Confidence 9999999999999999877 899999998874
No 11
>cd01561 CBS_like CBS_like: This subgroup includes Cystathionine beta-synthase (CBS) and Cysteine synthase. CBS is a unique heme-containing enzyme that catalyzes a pyridoxal 5'-phosphate (PLP)-dependent condensation of serine and homocysteine to give cystathionine. Deficiency of CBS leads to homocystinuria, an inherited disease of sulfur metabolism characterized by increased levels of the toxic metabolite homocysteine. Cysteine synthase on the other hand catalyzes the last step of cysteine biosynthesis. This subgroup also includes an O-Phosphoserine sulfhydrylase found in hyperthermophilic archaea which produces L-cysteine from sulfide and the more thermostable O-phospho-L-serine.
Probab=100.00 E-value=2.5e-33 Score=266.68 Aligned_cols=190 Identities=12% Similarity=0.060 Sum_probs=157.1
Q ss_pred CCCcCCCCCccccCCCCeEEEEeCCCCCCCChhHHHHHHHhhhHHHHhcCC----CEEEEeCCccchHHHHHHHHHHHhC
Q 019910 91 NTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIV----TDLVTCGGCQSAHATAVAVSCAERG 166 (334)
Q Consensus 91 ~~Tp~l~~~~l~~~~g~~lyvKrDDl~~p~~gGnK~RkL~~lL~~a~~~g~----~~VVt~Gg~qsNh~~AvAaaaa~~G 166 (334)
+-||++..+.+++..|.+||+|+|++ +| +||||+|++.+++..+.+.|. ++||+. ++|||++|+|++|+++|
T Consensus 1 g~TPl~~~~~l~~~~g~~i~~K~E~~-~p-tgS~K~R~a~~~l~~a~~~g~~~~~~~vv~~--SsGN~g~alA~~a~~~G 76 (291)
T cd01561 1 GNTPLVRLNRLSPGTGAEIYAKLEFF-NP-GGSVKDRIALYMIEDAEKRGLLKPGTTIIEP--TSGNTGIGLAMVAAAKG 76 (291)
T ss_pred CCCCEEEccccCCCCCCeEEEEeccc-CC-CCcchHHHHHHHHHHHHHcCCCCCCCEEEEe--CCChHHHHHHHHHHHcC
Confidence 35888888888888889999999999 57 499999999999999999987 778864 36999999999999999
Q ss_pred CeEEEEeCCCCCccccchhHHHHHCC-eEEEECCCCh----HHHHHHHHHHHHHHhccCCCccchhhhhhhhHhhhhhhc
Q 019910 167 LKSHLLLRGEQPQILTGYNLISTIYG-KVTYVPRTHY----AHRIEMLKSYANLVAGNNGDVVWCNEIFEASLTAQKSRA 241 (334)
Q Consensus 167 l~~~ivv~~~~p~~~~gn~~~~~~~G-~V~~v~~~~y----~~~~~~~~~~a~~~~~~~g~~~w~~~~~~~~~~~~~~~~ 241 (334)
++|++|||...++ .+...++.|| +|+.++.. | +++.+...+
T Consensus 77 ~~~~i~vp~~~~~---~k~~~~~~~Ga~v~~~~~~-~~~~~~~~~~~a~~------------------------------ 122 (291)
T cd01561 77 YRFIIVMPETMSE---EKRKLLRALGAEVILTPEA-EADGMKGAIAKARE------------------------------ 122 (291)
T ss_pred CeEEEEECCCCCH---HHHHHHHHcCCEEEEeCCC-CcCCHHHHHHHHHH------------------------------
Confidence 9999999997754 4778999999 99999864 4 332222111
Q ss_pred ccccchhhhhccccccCcEEEEcCCCcchhHHHHHH-HHHHHHHHhhhcCCCCCCEEEEcCCchhHHHHHHHHHHHcCCC
Q 019910 242 SCLGQMDAHKGIDNCRKKVLIVNEGAGDAVALLGVF-RLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGLGAICLGCV 320 (334)
Q Consensus 242 ~~~~~~~~~~~l~~~~~~~y~IpeGgs~p~a~~G~~-~la~EI~eq~~~g~~~~D~Vvvp~GtGgt~aGl~~g~k~lg~~ 320 (334)
+....+. ++++.+..||....|+. +++.||.+|+ ++ .||+||+|+|||||++|++.+++.+++.
T Consensus 123 -----------~~~~~~~-~~~~~~~~~p~~~~g~~~t~~~Ei~~ql--~~-~~d~vv~~~G~Gg~~~Gi~~~~~~~~~~ 187 (291)
T cd01561 123 -----------LAAETPN-AFWLNQFENPANPEAHYETTAPEIWEQL--DG-KVDAFVAGVGTGGTITGVARYLKEKNPN 187 (291)
T ss_pred -----------HHhhCCC-cEEecCCCCchHHHHHHHHHHHHHHHHc--CC-CCCEEEEeCChHHHHHHHHHHHHHhCCC
Confidence 1112223 34456678999999987 9999999998 32 6999999999999999999999999999
Q ss_pred CeEEEEEeccCCC
Q 019910 321 PLFNTLLVKLSRG 333 (334)
Q Consensus 321 ~~VigV~~~gs~~ 333 (334)
++||||++.++..
T Consensus 188 ~~vi~Ve~~~~~~ 200 (291)
T cd01561 188 VRIVGVDPVGSVL 200 (291)
T ss_pred CEEEEEecCCCcc
Confidence 9999999998764
No 12
>PRK04346 tryptophan synthase subunit beta; Validated
Probab=100.00 E-value=1.2e-33 Score=280.43 Aligned_cols=247 Identities=14% Similarity=0.075 Sum_probs=186.4
Q ss_pred ccCCCCcCCCCceeeeccChHHHHHHHhhh-hhhccCCCCceeecccccccccCCCCCCCcccccCCCCcCCCCCccccC
Q 019910 26 SASGQLSNSPQGICNVRMSGEELLSRLLDR-KWALTSPDSKIHQIKLFTTTEKHGGGPLGGISFLNNTCPFLGDDMIMRD 104 (334)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~p~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~Tp~l~~~~l~~~ 104 (334)
.+..+++|.|+|.|+||.+.+.+ ..|... +.+...|.++-.+..+|.. +.++++|+.++++++ +.
T Consensus 5 ~~~~~~~g~~gg~~~~~~~~~~~-~~~~~~~~~~~~~~~f~~~~~~~~~~----~~grpTPL~~~~~Ls---------~~ 70 (397)
T PRK04346 5 PDENGYFGEFGGRFVPETLMPAL-EELEEAYEKAKNDPEFQAELDYLLKN----YVGRPTPLYFAERLS---------EH 70 (397)
T ss_pred CCCCCcccCcCCEeCCHHHHHHH-HHHHHHHHHHhcCHHHHHHHHHHHHH----hcCCCCCceEhHHHH---------HH
Confidence 46778999999999999999985 666654 8888999988777788875 677665555555554 44
Q ss_pred C-CCeEEEEeCCCCCCCChhHHHHHHHhhhHHHHhcCCCEEEE-eCCccchHHHHHHHHHHHhCCeEEEEeCCCCCcccc
Q 019910 105 E-DRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIVTDLVT-CGGCQSAHATAVAVSCAERGLKSHLLLRGEQPQILT 182 (334)
Q Consensus 105 ~-g~~lyvKrDDl~~p~~gGnK~RkL~~lL~~a~~~g~~~VVt-~Gg~qsNh~~AvAaaaa~~Gl~~~ivv~~~~p~~~~ 182 (334)
. |.+||+||||+| | +|++|+|.....+..|++.|.++||+ +| .|||++|+|++|+++|++|+||||....+...
T Consensus 71 ~gg~~IylK~Edln-p-tGS~K~r~al~~~l~A~~~Gk~~vIaetg--aGnhG~A~A~~aa~~Gl~c~I~mp~~d~~rq~ 146 (397)
T PRK04346 71 LGGAKIYLKREDLN-H-TGAHKINNVLGQALLAKRMGKKRIIAETG--AGQHGVATATAAALLGLECVIYMGAEDVERQA 146 (397)
T ss_pred cCCCeEEEEECCCC-C-ccchHHHHHHHHHHHHHHcCCCeEEEecC--cHHHHHHHHHHHHHcCCcEEEEecCCchhhhh
Confidence 4 579999999996 4 58999999888888889999998886 44 49999999999999999999999985433334
Q ss_pred chhHHHHHCC-eEEEECCC--ChHHHHHHHHHHHHHHhccCCCccchhhhhhhhHhhhhhhcccccchhhhhccccccCc
Q 019910 183 GYNLISTIYG-KVTYVPRT--HYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASLTAQKSRASCLGQMDAHKGIDNCRKK 259 (334)
Q Consensus 183 gn~~~~~~~G-~V~~v~~~--~y~~~~~~~~~~a~~~~~~~g~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 259 (334)
.|+..|++|| +|+.|+.+ .+++ +..+.++ .|.. +....
T Consensus 147 ~nv~~m~~lGA~Vv~v~~g~~~l~d---a~~ea~~---------~~~~---------------------------~~~~~ 187 (397)
T PRK04346 147 LNVFRMKLLGAEVVPVTSGSRTLKD---AVNEALR---------DWVT---------------------------NVEDT 187 (397)
T ss_pred hHHHHHHHCCCEEEEECCCCCCHHH---HHHHHHH---------HHHH---------------------------hCCCC
Confidence 5888999999 99999864 3432 1111111 2311 11123
Q ss_pred EEEEcCC-CcchhH---HHHHHHHHHHHHHhhh--cCCCCCCEEEEcCCchhHHHHHHHHHHHcCCCCeEEEEEeccC
Q 019910 260 VLIVNEG-AGDAVA---LLGVFRLLQYLSQDHL--LGRKRAIKFVVDAGTGTTAVGLGLGAICLGCVPLFNTLLVKLS 331 (334)
Q Consensus 260 ~y~IpeG-gs~p~a---~~G~~~la~EI~eq~~--~g~~~~D~Vvvp~GtGgt~aGl~~g~k~lg~~~~VigV~~~gs 331 (334)
.|+++.. +.+|.. ..|+.+++.||.+|+. .| ..||+||+|+||||+++|++.+|.. .+.++||||++.|+
T Consensus 188 ~y~~gs~~gphp~p~~v~~~q~tig~Ei~eQ~~~~~g-~~pD~vVa~VGgGg~~~Gi~~~f~~-~~~v~iigVE~~G~ 263 (397)
T PRK04346 188 HYLIGSVAGPHPYPTMVRDFQSVIGEEAKAQILEKEG-RLPDAVVACVGGGSNAIGIFHPFID-DESVRLIGVEAAGK 263 (397)
T ss_pred eEEeCCcCCCCCchHHHHHhcchHHHHHHHHHHHhhC-CCCCEEEEecCccHhHHHHHHHHhh-CCCCeEEEEecCCC
Confidence 4544321 223332 3478899999999873 23 3699999999999999999999965 89999999999986
No 13
>PRK06381 threonine synthase; Validated
Probab=100.00 E-value=3.6e-33 Score=268.98 Aligned_cols=191 Identities=16% Similarity=0.159 Sum_probs=159.7
Q ss_pred ccCCCCcCCCCCccccCCC-CeEEEEeCCCCCCCChhHHHHHHHhhhHHHHhcCCCEEEEeCCccchHHHHHHHHHHHhC
Q 019910 88 FLNNTCPFLGDDMIMRDED-RCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIVTDLVTCGGCQSAHATAVAVSCAERG 166 (334)
Q Consensus 88 ~~~~~Tp~l~~~~l~~~~g-~~lyvKrDDl~~p~~gGnK~RkL~~lL~~a~~~g~~~VVt~Gg~qsNh~~AvAaaaa~~G 166 (334)
.+.+.||+++.+.|++..| .+||+|+|++| | +||||+|++.+++.+|+++|.++||+++ +|||++|+|++|+++|
T Consensus 11 ~~~g~TPL~~~~~l~~~~G~~~i~~K~E~~n-p-tGS~K~R~a~~~l~~a~~~g~~~lv~aS--sGN~g~alA~~aa~~G 86 (319)
T PRK06381 11 KPPGGTPLLRARKLEEELGLRKIYLKFEGAN-P-TGTQKDRIAEAHVRRAMRLGYSGITVGT--CGNYGASIAYFARLYG 86 (319)
T ss_pred ccCCCCceeEhHhhHHhcCCceEEEEecCCC-C-ccCcHHHHHHHHHHHHHHcCCCEEEEeC--CcHHHHHHHHHHHHcC
Confidence 3577899999999988888 69999999994 7 6999999999999999999999999654 5999999999999999
Q ss_pred CeEEEEeCCCCCccccchhHHHHHCC-eEEEECCCChHHHHHHHHHHHHHHhccCCCccchhhhhhhhHhhhhhhccccc
Q 019910 167 LKSHLLLRGEQPQILTGYNLISTIYG-KVTYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASLTAQKSRASCLG 245 (334)
Q Consensus 167 l~~~ivv~~~~p~~~~gn~~~~~~~G-~V~~v~~~~y~~~~~~~~~~a~~~~~~~g~~~w~~~~~~~~~~~~~~~~~~~~ 245 (334)
++|++|||...+. .++..++.|| +|+.++. .|++..+.+.+
T Consensus 87 ~~~~ivvp~~~~~---~~~~~l~~~GA~V~~~~~-~~~~~~~~a~~---------------------------------- 128 (319)
T PRK06381 87 LKAVIFIPRSYSN---SRVKEMEKYGAEIIYVDG-KYEEAVERSRK---------------------------------- 128 (319)
T ss_pred CcEEEEECCCCCH---HHHHHHHHcCCEEEEcCC-CHHHHHHHHHH----------------------------------
Confidence 9999999997754 4667899999 9999986 46643332221
Q ss_pred chhhhhccccccCcEEEEcCCCcch-hHHHHHHHHHHHHHHhhhcCCCCCCEEEEcCCchhHHHHHHHHHHHc------C
Q 019910 246 QMDAHKGIDNCRKKVLIVNEGAGDA-VALLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGLGAICL------G 318 (334)
Q Consensus 246 ~~~~~~~l~~~~~~~y~IpeGgs~p-~a~~G~~~la~EI~eq~~~g~~~~D~Vvvp~GtGgt~aGl~~g~k~l------g 318 (334)
+... +..|++++++.|+ ....||.+++.||.+|+ + ..||+||+|+|||||++|++.+++.+ +
T Consensus 129 -------~~~~-~~~~~~~~~~~n~~~~~~G~~t~a~Ei~~ql--~-~~~D~vv~~vGtGgt~~Gl~~~~~~~~~~g~~~ 197 (319)
T PRK06381 129 -------FAKE-NGIYDANPGSVNSVVDIEAYSAIAYEIYEAL--G-DVPDAVAVPVGNGTTLAGIYHGFRRLYDRGKTS 197 (319)
T ss_pred -------HHHH-cCcEecCCCCCCcchHhhhHHHHHHHHHHHh--C-CCCCEEEEcCCccHHHHHHHHHHHHHHhCCCcC
Confidence 1111 2456676665465 78999999999999998 3 35999999999999999999999999 8
Q ss_pred CCCeEEEEEeccC
Q 019910 319 CVPLFNTLLVKLS 331 (334)
Q Consensus 319 ~~~~VigV~~~gs 331 (334)
+.++|+||++.++
T Consensus 198 ~~~~vigVe~~~~ 210 (319)
T PRK06381 198 RMPRMIGVSTSGG 210 (319)
T ss_pred CCCEEEEEeeCCC
Confidence 9999999999775
No 14
>PRK06260 threonine synthase; Validated
Probab=100.00 E-value=4.5e-33 Score=276.52 Aligned_cols=210 Identities=16% Similarity=0.151 Sum_probs=173.0
Q ss_pred CCCceeecccccccccCCCCCCCcccccCCCCcCCCCCccccCCCC-eEEEEeCCCCCCCChhHHHHHHHhhhHHHHhcC
Q 019910 62 PDSKIHQIKLFTTTEKHGGGPLGGISFLNNTCPFLGDDMIMRDEDR-CFYVVRDDLLHPLVNGNKARKMDALLPLLEDHI 140 (334)
Q Consensus 62 p~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~Tp~l~~~~l~~~~g~-~lyvKrDDl~~p~~gGnK~RkL~~lL~~a~~~g 140 (334)
+...|||.++||. +. ..+++.++.||++..+.+++..|. +||+|+|++| | +||||+|.+.+++..+++.|
T Consensus 44 ~~~~wry~~~lp~-----~~--~~v~l~~G~TPLv~~~~l~~~~g~~~l~~K~E~~n-P-TGSfKdRga~~~v~~a~~~g 114 (397)
T PRK06260 44 GRGVWRYKELLPV-----KK--KIVSLNEGGTPLYRCPNLEKELGVKELYVKHEGAN-P-TGSFKDRGMTVGVTKALELG 114 (397)
T ss_pred CcceeeehhhcCC-----CC--CcccCCCCCCCeEEchhhHHHhCCCcEEEEeCCCC-C-CcCcHHHHHHHHHHHHHHcC
Confidence 4579999999997 32 257889999999999998888886 9999999995 7 69999999999999999999
Q ss_pred CCEEEEeCCccchHHHHHHHHHHHhCCeEEEEeCCC-CCccccchhHHHHHCC-eEEEECCCChHHHHHHHHHHHHHHhc
Q 019910 141 VTDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGE-QPQILTGYNLISTIYG-KVTYVPRTHYAHRIEMLKSYANLVAG 218 (334)
Q Consensus 141 ~~~VVt~Gg~qsNh~~AvAaaaa~~Gl~~~ivv~~~-~p~~~~gn~~~~~~~G-~V~~v~~~~y~~~~~~~~~~a~~~~~ 218 (334)
.++||+.+ +|||+.|+|++|+++|++|+||||.. .+. .+..+++.|| +|+.++. .|++..+.+++
T Consensus 115 ~~~vv~aS--sGN~g~alA~~aa~~G~~~~i~vP~~~~~~---~k~~~~~~~GA~vi~v~~-~~~~~~~~a~~------- 181 (397)
T PRK06260 115 VKTVACAS--TGNTSASLAAYAARAGLKCYVLLPAGKVAL---GKLAQALLHGAKVLEVDG-NFDDALDMVVE------- 181 (397)
T ss_pred CCEEEEeC--CcHHHHHHHHHHHHcCCcEEEEEeCCCccH---HHHHHHHhcCCEEEEECC-cHHHHHHHHHH-------
Confidence 99999754 69999999999999999999999986 443 4667889999 9999985 47754333221
Q ss_pred cCCCccchhhhhhhhHhhhhhhcccccchhhhhccccccCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhcCCCCCCEEE
Q 019910 219 NNGDVVWCNEIFEASLTAQKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVALLGVFRLLQYLSQDHLLGRKRAIKFV 298 (334)
Q Consensus 219 ~~g~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~IpeGgs~p~a~~G~~~la~EI~eq~~~g~~~~D~Vv 298 (334)
+.... ..|+++ + .||....|++++++||.+|+ ++..||+||
T Consensus 182 ----------------------------------~~~~~-g~y~~~-~-~np~~~~G~~t~a~Ei~eQl--~~~~pd~vv 222 (397)
T PRK06260 182 ----------------------------------LAKEG-KIYLLN-S-INPFRLEGQKTIGFEIADQL--GWEVPDRVV 222 (397)
T ss_pred ----------------------------------HHhhC-CEEeec-C-CCchhhcchhhHHHHHHHHh--CCCCCCEEE
Confidence 11111 345553 2 48899999999999999998 554699999
Q ss_pred EcCCchhHHHHHHHHHHHcC------CCCeEEEEEeccCC
Q 019910 299 VDAGTGTTAVGLGLGAICLG------CVPLFNTLLVKLSR 332 (334)
Q Consensus 299 vp~GtGgt~aGl~~g~k~lg------~~~~VigV~~~gs~ 332 (334)
+|+|+||+++|++++|+++. ...|||||++.|+.
T Consensus 223 vpvG~Gg~~~Gi~~~~~~l~~~G~i~~~prii~Vq~~g~~ 262 (397)
T PRK06260 223 LPVGNAGNISAIWKGFKELVELGIIDKLPKMTGIQAEGAA 262 (397)
T ss_pred EeCCcHHHHHHHHHHHHHHHhcCCcCCCCeEEEEecCCCc
Confidence 99999999999999999986 34799999998874
No 15
>PRK08329 threonine synthase; Validated
Probab=100.00 E-value=3.5e-33 Score=272.88 Aligned_cols=201 Identities=14% Similarity=0.087 Sum_probs=164.9
Q ss_pred CCceeecccccccccCCCCCCCcccccCCCCcCCCCCccccCCCCeEEEEeCCCCCCCChhHHHHHHHhhhHHHHhcCCC
Q 019910 63 DSKIHQIKLFTTTEKHGGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIVT 142 (334)
Q Consensus 63 ~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~Tp~l~~~~l~~~~g~~lyvKrDDl~~p~~gGnK~RkL~~lL~~a~~~g~~ 142 (334)
.+.|||.+|||. +.. ..+++.++.||+++. +.+||+|+|++ +| +||||+|++.+++..|++.|.+
T Consensus 41 ~~~wry~~~lP~-----~~~-~~~sl~eg~Tpl~~~-------~~~l~~K~E~~-nP-tGSfKdRga~~~i~~a~~~g~~ 105 (347)
T PRK08329 41 LDMRRYIDYLPV-----DEE-FLPHLTPPITPTVKR-------SIKVYFKLDYL-QP-TGSFKDRGTYVTVAKLKEEGIN 105 (347)
T ss_pred cchhhhHHhCCC-----CCC-CCCcCCCCCCccccC-------CCeEEEEeCCC-CC-CcCCHHHHHHHHHHHHHHcCCC
Confidence 479999999997 222 246889999999975 35899999999 47 6999999999999999999999
Q ss_pred EEEEeCCccchHHHHHHHHHHHhCCeEEEEeCCCCCccccchhHHHHHCC-eEEEECCCChHHHHHHHHHHHHHHhccCC
Q 019910 143 DLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGEQPQILTGYNLISTIYG-KVTYVPRTHYAHRIEMLKSYANLVAGNNG 221 (334)
Q Consensus 143 ~VVt~Gg~qsNh~~AvAaaaa~~Gl~~~ivv~~~~p~~~~gn~~~~~~~G-~V~~v~~~~y~~~~~~~~~~a~~~~~~~g 221 (334)
+||+.+ +|||++|+|++|+++|++|+||||.+.+. +|+.+++.|| +|+.++. .|++..+.+ ++
T Consensus 106 ~vv~aS--sGN~g~alA~~aa~~G~~~~v~vp~~~~~---~k~~~~~~~GA~v~~v~~-~~~~~~~~a----~~------ 169 (347)
T PRK08329 106 EVVIDS--SGNAALSLALYSLSEGIKVHVFVSYNASK---EKISLLSRLGAELHFVEG-DRMEVHEEA----VK------ 169 (347)
T ss_pred EEEEEC--CCcHHHHHHHHHHHcCCcEEEEECCCChH---HHHHHHHHcCCEEEEECC-CHHHHHHHH----HH------
Confidence 999865 59999999999999999999999998754 4778999999 9999985 465432221 11
Q ss_pred CccchhhhhhhhHhhhhhhcccccchhhhhccccccCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhcCCCCCCEEEEcC
Q 019910 222 DVVWCNEIFEASLTAQKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVALLGVFRLLQYLSQDHLLGRKRAIKFVVDA 301 (334)
Q Consensus 222 ~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~IpeGgs~p~a~~G~~~la~EI~eq~~~g~~~~D~Vvvp~ 301 (334)
+....+.+|+. ...||....|++++++||++|+ + .||+||+|+
T Consensus 170 -------------------------------l~~~~~~~~~~--~~~np~~~eG~~t~~~Ei~eql--~--~pD~vvvpv 212 (347)
T PRK08329 170 -------------------------------FSKRNNIPYVS--HWLNPYFLEGTKTIAYEIYEQI--G--VPDYAFVPV 212 (347)
T ss_pred -------------------------------HHHhcCCeecc--CCCCchhhccchhHHHHHHHHc--C--CCCEEEEeC
Confidence 11122234433 3468899999999999999997 4 599999999
Q ss_pred CchhHHHHHHHHHHHcC------CCCeEEEEEeccC
Q 019910 302 GTGTTAVGLGLGAICLG------CVPLFNTLLVKLS 331 (334)
Q Consensus 302 GtGgt~aGl~~g~k~lg------~~~~VigV~~~gs 331 (334)
|+|++++|++++|+++. +..+||+|++.++
T Consensus 213 G~Gg~l~Gi~~g~kel~~~g~i~~~p~ii~Vq~~g~ 248 (347)
T PRK08329 213 GSGTLFLGIWKGFKELHEMGEISKMPKLVAVQAEGY 248 (347)
T ss_pred CcHHHHHHHHHHHHHHHhcCCCCCCCEEEEEecCCC
Confidence 99999999999999984 5689999999875
No 16
>cd01563 Thr-synth_1 Threonine synthase is a pyridoxal phosphate (PLP) dependent enzyme that catalyses the last reaction in the synthesis of threonine from aspartate. It proceeds by converting O-phospho-L-homoserine (OPH) into threonine and inorganic phosphate. In plants, OPH is an intermediate between the methionine and threonine/isoleucine pathways. Thus threonine synthase competes for OPH with cystathionine-gamma-synthase, the first enzyme in the methionine pathway. These enzymes are in general dimers. Members of this CD, Thr-synth_1, are widely distributed in bacteria, archaea and higher plants.
Probab=100.00 E-value=3.1e-33 Score=269.61 Aligned_cols=208 Identities=15% Similarity=0.183 Sum_probs=170.9
Q ss_pred ceeecccccccccCCCCCCCcccccCCCCcCCCCCccccCCC-CeEEEEeCCCCCCCChhHHHHHHHhhhHHHHhcCCCE
Q 019910 65 KIHQIKLFTTTEKHGGGPLGGISFLNNTCPFLGDDMIMRDED-RCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIVTD 143 (334)
Q Consensus 65 ~~~~~~ll~~~~~~~~~~~~~~~~~~~~Tp~l~~~~l~~~~g-~~lyvKrDDl~~p~~gGnK~RkL~~lL~~a~~~g~~~ 143 (334)
.|||.++||. + -...+++..+-||++..+.|++..| .+||+|+|++ +| +||||+|++.+++..+.+.|.++
T Consensus 1 ~~~~~~~~~~-----~-~~~~~~l~~g~TPl~~~~~l~~~~g~~~i~~K~E~~-np-tGS~K~R~a~~~l~~a~~~g~~~ 72 (324)
T cd01563 1 LWRYRELLPV-----T-EDDIVSLGEGNTPLVRAPRLGERLGGKNLYVKDEGL-NP-TGSFKDRGMTVAVSKAKELGVKA 72 (324)
T ss_pred CccchhhCCC-----C-CCCcccCCCCCCceeechhhHhhcCCCceEEEecCC-CC-cccHHHhhHHHHHHHHHHcCCCE
Confidence 3899999997 2 1224788999999999999888776 7999999999 57 79999999999999999999999
Q ss_pred EEEeCCccchHHHHHHHHHHHhCCeEEEEeCCCCCccccchhHHHHHCC-eEEEECCCChHHHHHHHHHHHHHHhccCCC
Q 019910 144 LVTCGGCQSAHATAVAVSCAERGLKSHLLLRGEQPQILTGYNLISTIYG-KVTYVPRTHYAHRIEMLKSYANLVAGNNGD 222 (334)
Q Consensus 144 VVt~Gg~qsNh~~AvAaaaa~~Gl~~~ivv~~~~p~~~~gn~~~~~~~G-~V~~v~~~~y~~~~~~~~~~a~~~~~~~g~ 222 (334)
||+++ +|||+.|+|++|+.+|++|++|||...+. .+...++.|| +|+.++. .|+++.+.+++
T Consensus 73 vv~~S--sGN~g~alA~~a~~~G~~~~ivvp~~~~~---~k~~~l~~~GA~Vi~~~~-~~~~~~~~a~~----------- 135 (324)
T cd01563 73 VACAS--TGNTSASLAAYAARAGIKCVVFLPAGKAL---GKLAQALAYGATVLAVEG-NFDDALRLVRE----------- 135 (324)
T ss_pred EEEeC--CCHHHHHHHHHHHHcCCceEEEEeCCCCH---HHHHHHHHcCCEEEEECC-cHHHHHHHHHH-----------
Confidence 99874 59999999999999999999999998754 3667899999 9999986 46654443221
Q ss_pred ccchhhhhhhhHhhhhhhcccccchhhhhccccccCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhcCCCCCCEEEEcCC
Q 019910 223 VVWCNEIFEASLTAQKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVALLGVFRLLQYLSQDHLLGRKRAIKFVVDAG 302 (334)
Q Consensus 223 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~IpeGgs~p~a~~G~~~la~EI~eq~~~g~~~~D~Vvvp~G 302 (334)
+.... ..|. .+..||....|+.+++.||.+|+ +...+|+||+|+|
T Consensus 136 ------------------------------~~~~~-~~~~--~~~~n~~~~~g~~t~~~Ei~~q~--~~~~~d~vv~~vG 180 (324)
T cd01563 136 ------------------------------LAEEN-WIYL--SNSLNPYRLEGQKTIAFEIAEQL--GWEVPDYVVVPVG 180 (324)
T ss_pred ------------------------------HHHhc-Ceec--cCCCCcceecchhhhHHHHHHHc--CCCCCCEEEEecC
Confidence 11112 2333 33568888889999999999998 3235899999999
Q ss_pred chhHHHHHHHHHHHcC------CCCeEEEEEeccCC
Q 019910 303 TGTTAVGLGLGAICLG------CVPLFNTLLVKLSR 332 (334)
Q Consensus 303 tGgt~aGl~~g~k~lg------~~~~VigV~~~gs~ 332 (334)
||||++|++.+++.+. +.++||||++.++.
T Consensus 181 tGg~~~G~~~~~k~~~~~g~~~~~~~vigve~~~~~ 216 (324)
T cd01563 181 NGGNITAIWKGFKELKELGLIDRLPRMVGVQAEGAA 216 (324)
T ss_pred CcHHHHHHHHHHHHHHhCCccccCCeEEEEecCCCC
Confidence 9999999999999885 58999999998764
No 17
>COG1171 IlvA Threonine dehydratase [Amino acid transport and metabolism]
Probab=100.00 E-value=1.4e-33 Score=273.56 Aligned_cols=190 Identities=15% Similarity=0.144 Sum_probs=159.9
Q ss_pred CCCCcCCCCCccccCCCCeEEEEeCCCCCCCChhHHHHHHHhhhHHHH-h-cCCCEEEEeCCccchHHHHHHHHHHHhCC
Q 019910 90 NNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLE-D-HIVTDLVTCGGCQSAHATAVAVSCAERGL 167 (334)
Q Consensus 90 ~~~Tp~l~~~~l~~~~g~~lyvKrDDl~~p~~gGnK~RkL~~lL~~a~-~-~g~~~VVt~Gg~qsNh~~AvAaaaa~~Gl 167 (334)
-+-||+..++.|++..|.+||+|||||| | +|+||.|+..+.+..+. + +...+||++++ |||++++|++|+++|+
T Consensus 23 ~~~TPL~~s~~Ls~~~g~~v~lK~E~lQ-~-~gSFK~RGA~n~i~~Ls~e~~~~~gViaaSa--GNHaQGvA~aa~~lGi 98 (347)
T COG1171 23 VNPTPLQRSPSLSERLGAEIYLKRENLQ-P-VGSFKIRGAYNKLSSLSEEEERAAGVIAASA--GNHAQGVAYAAKRLGI 98 (347)
T ss_pred ccCCCcccchhhHHhhCceEEEeeccCc-c-cccchhhhHHHHHHhcChhhhhcCceEEecC--CcHHHHHHHHHHHhCC
Confidence 3569999999999999999999999997 5 79999999988887754 3 56788998764 9999999999999999
Q ss_pred eEEEEeCCCCCccccchhHHHHHCC-eEEEECCCChHHHHHHHHHHHHHHhccCCCccchhhhhhhhHhhhhhhcccccc
Q 019910 168 KSHLLLRGEQPQILTGYNLISTIYG-KVTYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASLTAQKSRASCLGQ 246 (334)
Q Consensus 168 ~~~ivv~~~~p~~~~gn~~~~~~~G-~V~~v~~~~y~~~~~~~~~~a~~~~~~~g~~~w~~~~~~~~~~~~~~~~~~~~~ 246 (334)
+++||||..+|.. |+..+|.|| +|+++++ +|++..++. .++++++|.+
T Consensus 99 ~a~IvMP~~tp~~---Kv~a~r~~GaeVil~g~-~~dda~~~a----~~~a~~~G~~----------------------- 147 (347)
T COG1171 99 KATIVMPETTPKI---KVDATRGYGAEVILHGD-NFDDAYAAA----EELAEEEGLT----------------------- 147 (347)
T ss_pred CEEEEecCCCcHH---HHHHHHhcCCEEEEECC-CHHHHHHHH----HHHHHHcCCE-----------------------
Confidence 9999999999876 557889999 9999986 588766654 4455566543
Q ss_pred hhhhhccccccCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhcCCCCCCEEEEcCCchhHHHHHHHHHHHcCCCCeEEEE
Q 019910 247 MDAHKGIDNCRKKVLIVNEGAGDAVALLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGLGAICLGCVPLFNTL 326 (334)
Q Consensus 247 ~~~~~~l~~~~~~~y~IpeGgs~p~a~~G~~~la~EI~eq~~~g~~~~D~Vvvp~GtGgt~aGl~~g~k~lg~~~~VigV 326 (334)
+.+++++|++|.. +.|++.||.+|+. +.+|.||||+|+||+++|++.+++.+.|.++||||
T Consensus 148 ------~i~pfD~p~viAG----------QGTi~lEileq~~---~~~d~v~vpvGGGGLisGia~~~k~~~p~~~vIGV 208 (347)
T COG1171 148 ------FVPPFDDPDVIAG----------QGTIALEILEQLP---DLPDAVFVPVGGGGLISGIATALKALSPEIKVIGV 208 (347)
T ss_pred ------EeCCCCCcceeec----------ccHHHHHHHHhcc---ccCCEEEEecCccHHHHHHHHHHHHhCCCCeEEEE
Confidence 5567777777733 3459999999983 23699999999999999999999999999999999
Q ss_pred EeccCCC
Q 019910 327 LVKLSRG 333 (334)
Q Consensus 327 ~~~gs~~ 333 (334)
++.+.+.
T Consensus 209 Ep~~a~~ 215 (347)
T COG1171 209 EPEGAPS 215 (347)
T ss_pred eeCCChH
Confidence 9998764
No 18
>PRK06721 threonine synthase; Reviewed
Probab=100.00 E-value=4.5e-33 Score=272.63 Aligned_cols=211 Identities=10% Similarity=0.122 Sum_probs=170.3
Q ss_pred CCCceeecccccccccCCCCCCCcccccCCCCcCCCCCccccCCCCeEEEEeCCCCCCCChhHHHHHHHhhhHHHHhcCC
Q 019910 62 PDSKIHQIKLFTTTEKHGGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIV 141 (334)
Q Consensus 62 p~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~Tp~l~~~~l~~~~g~~lyvKrDDl~~p~~gGnK~RkL~~lL~~a~~~g~ 141 (334)
|-..|||.++||. +++...+++..+.||++..+.+++..|.+||+|+|++| | +||||+|++.+++..++++|.
T Consensus 3 ~~~~~ry~~~lp~-----~~~~~~~~l~~G~TPl~~l~~l~~~~g~~i~~K~E~~n-p-tGS~KdR~a~~~i~~a~~~g~ 75 (352)
T PRK06721 3 KGLLNQYASYLPV-----NENTPDVSLMEGNTPLIPLLNISKQLGIQLYGKYEGAN-P-TGSFKDRGMVMAVAKAKEEGS 75 (352)
T ss_pred cchHHHHHHhCCC-----CCCCCccccCcCCCCeeEchhhHHHhCCeEEEEecCCC-C-ccchHHHHHHHHHHHHHHCCC
Confidence 4567899999997 33333468889999999999988888899999999995 7 699999999999999999999
Q ss_pred CEEEEeCCccchHHHHHHHHHHHhCCeEEEEeCCCC-CccccchhHHHHHCC-eEEEECCCChHHHHHHHHHHHHHHhcc
Q 019910 142 TDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGEQ-PQILTGYNLISTIYG-KVTYVPRTHYAHRIEMLKSYANLVAGN 219 (334)
Q Consensus 142 ~~VVt~Gg~qsNh~~AvAaaaa~~Gl~~~ivv~~~~-p~~~~gn~~~~~~~G-~V~~v~~~~y~~~~~~~~~~a~~~~~~ 219 (334)
++||+++ +||||.|+|++|+++|++|++|||... +. .+..+++.|| +|+.++. .|++..+.+++++ .
T Consensus 76 ~~vV~aS--sGN~G~alA~~aa~~G~~~~vvvp~~~~~~---~k~~~~~~~GA~V~~~~~-~~~~~~~~a~~~~----~- 144 (352)
T PRK06721 76 EAIICAS--TGNTSASAAAYAARLGMKCIIVIPEGKIAH---GKLAQAVAYGAEIISIEG-NFDDALKAVRNIA----A- 144 (352)
T ss_pred CEEEEEC--CcHHHHHHHHHHHHCCCcEEEEECCCCCCH---HHHHHHHHcCCEEEEECC-CHHHHHHHHHHHH----H-
Confidence 9999874 599999999999999999999999864 32 3677899999 9999985 4765444332211 1
Q ss_pred CCCccchhhhhhhhHhhhhhhcccccchhhhhccccccCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhcCCCCCCEEEE
Q 019910 220 NGDVVWCNEIFEASLTAQKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVALLGVFRLLQYLSQDHLLGRKRAIKFVV 299 (334)
Q Consensus 220 ~g~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~IpeGgs~p~a~~G~~~la~EI~eq~~~g~~~~D~Vvv 299 (334)
.. ..+++ +..||....||.++++||.+|+. ..+|+||+
T Consensus 145 ------------------------------------~~-~~~~~--~~~n~~~~~G~~t~~~Ei~eq~~---~~~D~ivv 182 (352)
T PRK06721 145 ------------------------------------EE-PITLV--NSVNPYRIEGQKTAAFEICDQLQ---RAPDVLAI 182 (352)
T ss_pred ------------------------------------hC-Cceec--cCCCchhhhhhhhHHHHHHHHhC---CCCCEEEE
Confidence 11 12323 34578888999999999999972 25899999
Q ss_pred cCCchhHHHHHHHHH----HHcC-CCCeEEEEEeccCC
Q 019910 300 DAGTGTTAVGLGLGA----ICLG-CVPLFNTLLVKLSR 332 (334)
Q Consensus 300 p~GtGgt~aGl~~g~----k~lg-~~~~VigV~~~gs~ 332 (334)
|+|||||++|+++|+ |..+ +.++||||++.++.
T Consensus 183 ~vG~GG~l~G~~~G~~~~lk~~~~~~~~vigVep~~~~ 220 (352)
T PRK06721 183 PVGNAGNITAYWKGFCEYEKEKGYKKPRIHGFEAEGAA 220 (352)
T ss_pred eCCchHHHHHHHHHHHHHHHhcCCCCCeEEEEecCCCC
Confidence 999999999977665 4455 89999999998874
No 19
>PRK05638 threonine synthase; Validated
Probab=100.00 E-value=8.3e-33 Score=278.13 Aligned_cols=206 Identities=14% Similarity=0.133 Sum_probs=170.5
Q ss_pred CCCceeecccccccccCCCCCCCcccccCCCCcCCCCCccccCCCCeEEEEeCCCCCCCChhHHHHHHHhhhHHHHhcCC
Q 019910 62 PDSKIHQIKLFTTTEKHGGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIV 141 (334)
Q Consensus 62 p~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~Tp~l~~~~l~~~~g~~lyvKrDDl~~p~~gGnK~RkL~~lL~~a~~~g~ 141 (334)
+.+.|||.+|||. .. ..+++..+.||++... +++..|.+||+|+|++| | +||||+|++.+++..|.+.|.
T Consensus 43 ~~~~wry~~~lp~-----~~--~~v~l~~G~TPLv~~~-~~~~~g~~l~~K~E~~n-P-tGSfKdR~a~~~i~~a~~~g~ 112 (442)
T PRK05638 43 DPGVWRYKELLPQ-----VK--KIISLGEGGTPLIRAR-ISEKLGENVYIKDETRN-P-TGSFRDRLATVAVSYGLPYAA 112 (442)
T ss_pred CCChhhhhhhCCC-----cC--CccccCCCCCcEEccc-chHHhCCeEEEEeCCCC-C-CCChHHHHHHHHHHHHHHcCC
Confidence 4578999999997 22 2357889999999874 66667889999999995 7 699999999999999999999
Q ss_pred CEEEEeCCccchHHHHHHHHHHHhCCeEEEEeCCCCCccccchhHHHHHCC-eEEEECCCChHHHHHHHHHHHHHHhccC
Q 019910 142 TDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGEQPQILTGYNLISTIYG-KVTYVPRTHYAHRIEMLKSYANLVAGNN 220 (334)
Q Consensus 142 ~~VVt~Gg~qsNh~~AvAaaaa~~Gl~~~ivv~~~~p~~~~gn~~~~~~~G-~V~~v~~~~y~~~~~~~~~~a~~~~~~~ 220 (334)
++||+.+ +|||+.|+|++|+++|++|+||||.+.+. .|..+++.|| +|+.|+. .|++..+.+.+
T Consensus 113 ~~vv~aS--sGN~g~alA~~aa~~G~~~~i~vp~~~~~---~k~~~~~~~GA~vi~v~~-~~~~~~~~a~~--------- 177 (442)
T PRK05638 113 NGFIVAS--DGNAAASVAAYSARAGKEAFVVVPRKVDK---GKLIQMIAFGAKIIRYGE-SVDEAIEYAEE--------- 177 (442)
T ss_pred CEEEEeC--CChHHHHHHHHHHHcCCCEEEEEeCCCCH---HHHHHHHhcCcEEEEECC-CHHHHHHHHHH---------
Confidence 9999743 69999999999999999999999998754 4778999999 9999985 57654433221
Q ss_pred CCccchhhhhhhhHhhhhhhcccccchhhhhccccccCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhcCCCCCCEEEEc
Q 019910 221 GDVVWCNEIFEASLTAQKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVALLGVFRLLQYLSQDHLLGRKRAIKFVVD 300 (334)
Q Consensus 221 g~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~IpeGgs~p~a~~G~~~la~EI~eq~~~g~~~~D~Vvvp 300 (334)
+.. ....|+++ +..||....|++++++||++|+ + ||+||+|
T Consensus 178 --------------------------------~~~-~~~~~~~~-~~~np~~~eG~~t~a~Ei~eq~--~---pD~vv~p 218 (442)
T PRK05638 178 --------------------------------LAR-LNGLYNVT-PEYNIIGLEGQKTIAFELWEEI--N---PTHVIVP 218 (442)
T ss_pred --------------------------------HHH-hCCeEecC-CCCChhHhhhHHHHHHHHHHHH--C---cCEEEEe
Confidence 111 12456664 5568999999999999999998 2 8999999
Q ss_pred CCchhHHHHHHHHHHHcCC------CCeEEEEEeccC
Q 019910 301 AGTGTTAVGLGLGAICLGC------VPLFNTLLVKLS 331 (334)
Q Consensus 301 ~GtGgt~aGl~~g~k~lg~------~~~VigV~~~gs 331 (334)
+|+||+++|+++||+++.+ ..+|+||++.+.
T Consensus 219 vG~Gg~~~Gi~~gfkel~~~g~i~~~prii~Vq~~~~ 255 (442)
T PRK05638 219 TGSGSYLYSIYKGFKELLEIGVIEEIPKLIAVQTERC 255 (442)
T ss_pred CCchHHHHHHHHHHHHHHhCCcccCCCeEEEEecCCC
Confidence 9999999999999999865 369999999765
No 20
>PRK10717 cysteine synthase A; Provisional
Probab=100.00 E-value=7e-33 Score=268.50 Aligned_cols=202 Identities=15% Similarity=0.057 Sum_probs=160.4
Q ss_pred cccCCCCcCCCCCccccCCCCeEEEEeCCCCCCCChhHHHHHHHhhhHHHHhcCC----CEEEEeCCccchHHHHHHHHH
Q 019910 87 SFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIV----TDLVTCGGCQSAHATAVAVSC 162 (334)
Q Consensus 87 ~~~~~~Tp~l~~~~l~~~~g~~lyvKrDDl~~p~~gGnK~RkL~~lL~~a~~~g~----~~VVt~Gg~qsNh~~AvAaaa 162 (334)
....+.||+++.+++++..|.+||+|+|++ +| +||||+|++.+++..+++.|. ++||+++ +|||++|+|++|
T Consensus 8 ~~~~g~TPL~~~~~l~~~~g~~i~~K~E~~-np-tGS~K~Rga~~~v~~a~~~g~~~~g~~vv~aS--sGN~g~alA~~a 83 (330)
T PRK10717 8 SDTIGNTPLIRLNRASEATGCEILGKAEFL-NP-GGSVKDRAALNIIWDAEKRGLLKPGGTIVEGT--AGNTGIGLALVA 83 (330)
T ss_pred HHHhCCCceEEccccCCCCCCeEEEEeecc-CC-CCCchHHHHHHHHHHHHHcCCCCCCCEEEEeC--CcHHHHHHHHHH
Confidence 345677999999999888899999999999 47 599999999999999999987 6788754 599999999999
Q ss_pred HHhCCeEEEEeCCCCCccccchhHHHHHCC-eEEEECCCChHHHHHHHHHHHHHHhccCCCccchhhhhhhhHhhhhhhc
Q 019910 163 AERGLKSHLLLRGEQPQILTGYNLISTIYG-KVTYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASLTAQKSRA 241 (334)
Q Consensus 163 a~~Gl~~~ivv~~~~p~~~~gn~~~~~~~G-~V~~v~~~~y~~~~~~~~~~a~~~~~~~g~~~w~~~~~~~~~~~~~~~~ 241 (334)
+++|++|+||||...++. +..+++.|| +|+.++...|++.+...+. +.+
T Consensus 84 ~~~G~~~~vv~p~~~~~~---k~~~~~~~GA~V~~~~~~~~~~~~~~~~~-a~~-------------------------- 133 (330)
T PRK10717 84 AARGYKTVIVMPETQSQE---KKDLLRALGAELVLVPAAPYANPNNYVKG-AGR-------------------------- 133 (330)
T ss_pred HHcCCcEEEEeCCCCCHH---HHHHHHHcCCEEEEeCCcccccccchHHH-HHH--------------------------
Confidence 999999999999988653 678999999 9999985324421111110 111
Q ss_pred ccccchhhhhccccccCcEEEEcCCCcchhHH-HHHHHHHHHHHHhhhcCCCCCCEEEEcCCchhHHHHHHHHHHHcCCC
Q 019910 242 SCLGQMDAHKGIDNCRKKVLIVNEGAGDAVAL-LGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGLGAICLGCV 320 (334)
Q Consensus 242 ~~~~~~~~~~~l~~~~~~~y~IpeGgs~p~a~-~G~~~la~EI~eq~~~g~~~~D~Vvvp~GtGgt~aGl~~g~k~lg~~ 320 (334)
.++++....++.++++.+..||... .||.+++.||.+|+ ++ .+|+||+|+|||||++|++.++++++++
T Consensus 134 -------~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~a~Ei~~ql--~~-~~d~iv~~vG~GG~~~Gi~~~~k~~~~~ 203 (330)
T PRK10717 134 -------LAEELVASEPNGAIWANQFDNPANREAHYETTGPEIWEQT--DG-KVDGFVCAVGTGGTLAGVSRYLKETNPK 203 (330)
T ss_pred -------HHHHHHhhCCCCeEecCCCCChhhHHHHHHhHHHHHHHhc--CC-CCCEEEEecCchHHHHHHHHHHHHhCCC
Confidence 0111222222334566778888865 67999999999998 32 4899999999999999999999999999
Q ss_pred CeEEEEEeccCC
Q 019910 321 PLFNTLLVKLSR 332 (334)
Q Consensus 321 ~~VigV~~~gs~ 332 (334)
++|+||++.++.
T Consensus 204 ~~vi~Vep~~~~ 215 (330)
T PRK10717 204 VKIVLADPTGSA 215 (330)
T ss_pred CEEEEEcCCCCc
Confidence 999999998874
No 21
>TIGR01136 cysKM cysteine synthases. This model discriminates cysteine synthases (EC 2.5.1.47) (both CysK and CysM) from cystathionine beta-synthase, a protein found primarily in eukaryotes and carrying a C-terminal CBS domain lacking from this protein. Bacterial proteins lacking the CBS domain but otherwise showing resemblamnce to cystathionine beta-synthases and considerable phylogenetic distance from known cysteine synthases were excluded from the seed and score below the trusted cutoff.
Probab=100.00 E-value=1.4e-32 Score=262.97 Aligned_cols=191 Identities=14% Similarity=0.094 Sum_probs=156.5
Q ss_pred CCCcCCCCCccccCCCCeEEEEeCCCCCCCChhHHHHHHHhhhHHHHhcCC----CEEEEeCCccchHHHHHHHHHHHhC
Q 019910 91 NTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIV----TDLVTCGGCQSAHATAVAVSCAERG 166 (334)
Q Consensus 91 ~~Tp~l~~~~l~~~~g~~lyvKrDDl~~p~~gGnK~RkL~~lL~~a~~~g~----~~VVt~Gg~qsNh~~AvAaaaa~~G 166 (334)
+.||+++.+.|++..|.+||+|+|++| | +||||+|++.+++..+++.|. ++||+.+ +|||++|+|++|+++|
T Consensus 6 g~TPL~~~~~l~~~~g~~i~~K~E~~~-p-tGS~K~R~a~~~~~~a~~~g~~~~g~~vv~aS--sGN~g~alA~~a~~~G 81 (299)
T TIGR01136 6 GNTPLVRLNRLAPGCDARVLAKLEGRN-P-SGSVKDRIALSMIEDAEKRGLLKPGDTIIEAT--SGNTGIALAMVAAAKG 81 (299)
T ss_pred CCCceEEccccCCCCCceEEEEEcccC-C-CCCccHHHHHHHHHHHHHcCCCCCCCEEEEeC--CChHHHHHHHHHHHcC
Confidence 458999998888888899999999995 7 699999999999999999987 6788654 5999999999999999
Q ss_pred CeEEEEeCCCCCccccchhHHHHHCC-eEEEECCCC-hHHHHHHHHHHHHHHhccCCCccchhhhhhhhHhhhhhhcccc
Q 019910 167 LKSHLLLRGEQPQILTGYNLISTIYG-KVTYVPRTH-YAHRIEMLKSYANLVAGNNGDVVWCNEIFEASLTAQKSRASCL 244 (334)
Q Consensus 167 l~~~ivv~~~~p~~~~gn~~~~~~~G-~V~~v~~~~-y~~~~~~~~~~a~~~~~~~g~~~w~~~~~~~~~~~~~~~~~~~ 244 (334)
++|+||||...++. ++..++.|| +|+.++... ++++.+.+++
T Consensus 82 ~~~~i~vp~~~~~~---k~~~~~~~GA~v~~~~~~~~~~~~~~~a~~--------------------------------- 125 (299)
T TIGR01136 82 YKLILTMPETMSLE---RRKLLRAYGAELILTPAEEGMKGAIDKAEE--------------------------------- 125 (299)
T ss_pred CcEEEEECCCCCHH---HHHHHHHcCCEEEEeCCCCChHHHHHHHHH---------------------------------
Confidence 99999999987653 678999999 999998531 3433222211
Q ss_pred cchhhhhccccccCcEEEEcCCCcchhH-HHHHHHHHHHHHHhhhcCCCCCCEEEEcCCchhHHHHHHHHHHHcCCCCeE
Q 019910 245 GQMDAHKGIDNCRKKVLIVNEGAGDAVA-LLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGLGAICLGCVPLF 323 (334)
Q Consensus 245 ~~~~~~~~l~~~~~~~y~IpeGgs~p~a-~~G~~~la~EI~eq~~~g~~~~D~Vvvp~GtGgt~aGl~~g~k~lg~~~~V 323 (334)
+.... +.|+++.+..|+.. ..||.+++.||.+|+ ++ .||+||+|+|||||++|++.+++.+++.++|
T Consensus 126 --------~~~~~-~~~~~~~~~~~~~~~~~g~~t~~~Ei~~ql--~~-~~d~iv~~vG~Gg~~~G~~~~~~~~~~~~~v 193 (299)
T TIGR01136 126 --------LAAET-NKYVMLDQFENPANPEAHYKTTGPEIWRDT--DG-RIDHFVAGVGTGGTITGVGRYLKEQNPNIKI 193 (299)
T ss_pred --------HHhhC-CCeEecCCCCCchhHHHHHHHHHHHHHHhc--CC-CCCEEEEcCchhHHHHHHHHHHHHhCCCCEE
Confidence 12122 34555666667665 678999999999998 33 5999999999999999999999999999999
Q ss_pred EEEEeccCCC
Q 019910 324 NTLLVKLSRG 333 (334)
Q Consensus 324 igV~~~gs~~ 333 (334)
+||++.++..
T Consensus 194 i~Ve~~~~~~ 203 (299)
T TIGR01136 194 VAVEPAESPV 203 (299)
T ss_pred EEEecCCCcc
Confidence 9999998864
No 22
>PLN02618 tryptophan synthase, beta chain
Probab=100.00 E-value=8e-33 Score=275.45 Aligned_cols=252 Identities=15% Similarity=0.063 Sum_probs=186.0
Q ss_pred ccCCCCcCCCCceeeeccChHHHHHHHhhh-hhhccCCCCceeecccccccccCCCCCCCcccccCCCCcCCCCCccccC
Q 019910 26 SASGQLSNSPQGICNVRMSGEELLSRLLDR-KWALTSPDSKIHQIKLFTTTEKHGGGPLGGISFLNNTCPFLGDDMIMRD 104 (334)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~p~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~Tp~l~~~~l~~~ 104 (334)
.+..+++|.|+|-|+||.+-+.+ ..|.+. +.+...|.++-.+..++-. +.++++|+.++++++..++.. ..
T Consensus 13 ~~~~~~~g~~gg~~~~~~~~~~~-~~~~~~~~~~~~~~~f~~~~~~~l~~----~vGr~TPL~~~~~Ls~~~g~~---~~ 84 (410)
T PLN02618 13 PDSFGRFGKFGGKYVPETLMTAL-SELEAAFNALATDPEFQEELAGILKD----YVGRETPLYFAERLTEHYKRA---DG 84 (410)
T ss_pred CCCCCcccCcCCEeCCHHHHHHH-HHHHHHHHHHhcChhhHHHHHHHHHH----hcCCCCceeEhhhHHHHhccc---cC
Confidence 46789999999999999999885 666654 8888999987666666654 566666666666665544310 01
Q ss_pred CCCeEEEEeCCCCCCCChhHHHHHHHhhhHHHHhcCCCEEEEeCCccchHHHHHHHHHHHhCCeEEEEeCCCCCccccch
Q 019910 105 EDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIVTDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGEQPQILTGY 184 (334)
Q Consensus 105 ~g~~lyvKrDDl~~p~~gGnK~RkL~~lL~~a~~~g~~~VVt~Gg~qsNh~~AvAaaaa~~Gl~~~ivv~~~~p~~~~gn 184 (334)
.|++||+||||+| | +|+||+|.....+..|++.|.++||+..| .|||++|+|++|+++|++|+||||......+..|
T Consensus 85 ~g~~IylK~E~ln-p-tGS~K~R~a~~~~l~A~~~g~~~vIaesg-aGNhG~AlA~aaa~~Gl~~~I~m~~~~~~~~~~n 161 (410)
T PLN02618 85 EGPEIYLKREDLN-H-TGAHKINNAVAQALLAKRLGKKRIIAETG-AGQHGVATATVCARFGLECIVYMGAQDMERQALN 161 (410)
T ss_pred CCCEEEEEeCCCC-C-ccchHHHHHHHHHHHHHHcCCCEEEEEcC-cHHHHHHHHHHHHHcCCcEEEEEcCCchhhhhhh
Confidence 1579999999996 5 59999999877777788999998886543 4999999999999999999999998644444568
Q ss_pred hHHHHHCC-eEEEECC--CChHHHH-HHHHHHHHHHhccCCCccchhhhhhhhHhhhhhhcccccchhhhhccccccCcE
Q 019910 185 NLISTIYG-KVTYVPR--THYAHRI-EMLKSYANLVAGNNGDVVWCNEIFEASLTAQKSRASCLGQMDAHKGIDNCRKKV 260 (334)
Q Consensus 185 ~~~~~~~G-~V~~v~~--~~y~~~~-~~~~~~a~~~~~~~g~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 260 (334)
+.++++|| +|+.|+. +.+++.. ++++ .| ....++.
T Consensus 162 v~~mr~lGA~Vi~v~~g~~~~~dA~~ea~~-------------~~----------------------------~~~~~~~ 200 (410)
T PLN02618 162 VFRMRLLGAEVRPVHSGTATLKDATSEAIR-------------DW----------------------------VTNVETT 200 (410)
T ss_pred HHHHHHCCCEEEEEeCCCCCHHHHHHHHHH-------------HH----------------------------HhccCCC
Confidence 88999999 9999953 2344422 2211 12 1111223
Q ss_pred EEEcCCC--cchh---HHHHHHHHHHHHHHhhh--cCCCCCCEEEEcCCchhHHHHHHHHHHHcCCCCeEEEEEeccC
Q 019910 261 LIVNEGA--GDAV---ALLGVFRLLQYLSQDHL--LGRKRAIKFVVDAGTGTTAVGLGLGAICLGCVPLFNTLLVKLS 331 (334)
Q Consensus 261 y~IpeGg--s~p~---a~~G~~~la~EI~eq~~--~g~~~~D~Vvvp~GtGgt~aGl~~g~k~lg~~~~VigV~~~gs 331 (334)
+|+.... .+|. -..|..+++.||.+|.. .+ ..||+||+|+||||+++|++.+|+. ++.++||||++.|+
T Consensus 201 ~yi~gs~~gp~P~~~~v~~~q~tig~Ei~~Q~~~~~g-~~pD~VV~~VGgGg~~~Gi~~~f~~-~~~v~ligVEa~G~ 276 (410)
T PLN02618 201 HYILGSVAGPHPYPMMVRDFHSVIGKETRRQAMEKWG-GKPDVLVACVGGGSNAMGLFHEFID-DEDVRLIGVEAAGF 276 (410)
T ss_pred EEEecCcCCCCCCHHHHHHhhHHHHHHHHHHHHHHhC-CCCCEEEEEeCchHHHHHHHHHHHh-CCCceEEEEEeCCC
Confidence 4443322 1332 23677789999988762 23 4699999999999999999999964 79999999999986
No 23
>cd06448 L-Ser-dehyd Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- , D-serine, or L-threonine to pyruvate/ketobutyrate and ammonia.
Probab=100.00 E-value=7.8e-33 Score=267.30 Aligned_cols=189 Identities=12% Similarity=0.092 Sum_probs=155.1
Q ss_pred CcCCCCCccccCCCCeEEEEeCCCCCCCChhHHHHHHHhhhHHHHhcC---CCEEEEeCCccchHHHHHHHHHHHhCCeE
Q 019910 93 CPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHI---VTDLVTCGGCQSAHATAVAVSCAERGLKS 169 (334)
Q Consensus 93 Tp~l~~~~l~~~~g~~lyvKrDDl~~p~~gGnK~RkL~~lL~~a~~~g---~~~VVt~Gg~qsNh~~AvAaaaa~~Gl~~ 169 (334)
||+++.+.+++..|.+||+|+|++| | +||||+|++.+++..+.++| .++||+++ +|||+.|+|++|+++|++|
T Consensus 2 TPl~~~~~l~~~~g~~i~~K~E~~n-p-tGS~K~R~a~~~l~~a~~~g~~~~~~vv~aS--sGN~g~alA~~a~~~G~~~ 77 (316)
T cd06448 2 TPLIESTALSKTAGCNVFLKLENLQ-P-SGSFKIRGIGHLCQKSAKQGLNECVHVVCSS--GGNAGLAAAYAARKLGVPC 77 (316)
T ss_pred CCccccchhhHhhCCeEEEEeccCC-C-cCChHHHHHHHHHHHHHHhhcccCCeEEEeC--CcHHHHHHHHHHHHcCCCE
Confidence 8888888888877899999999995 7 69999999999999999998 78999876 4999999999999999999
Q ss_pred EEEeCCCCCccccchhHHHHHCC-eEEEECCCChHHHHHHHHHHHHHHhccCCCccchhhhhhhhHhhhhhhcccccchh
Q 019910 170 HLLLRGEQPQILTGYNLISTIYG-KVTYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASLTAQKSRASCLGQMD 248 (334)
Q Consensus 170 ~ivv~~~~p~~~~gn~~~~~~~G-~V~~v~~~~y~~~~~~~~~~a~~~~~~~g~~~w~~~~~~~~~~~~~~~~~~~~~~~ 248 (334)
++|||...++. +...++.|| +|+.++...+++..+..+.
T Consensus 78 ~iv~p~~~~~~---k~~~l~~~GA~v~~~~~~~~~~~~~~~~~------------------------------------- 117 (316)
T cd06448 78 TIVVPESTKPR---VVEKLRDEGATVVVHGKVWWEADNYLREE------------------------------------- 117 (316)
T ss_pred EEEECCCCCHH---HHHHHHHcCCEEEEECCchHHHHHHHHHH-------------------------------------
Confidence 99999987654 567899999 9999986324433222211
Q ss_pred hhhccccccCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhcCC-CCCCEEEEcCCchhHHHHHHHHHHHcC-CCCeEEEE
Q 019910 249 AHKGIDNCRKKVLIVNEGAGDAVALLGVFRLLQYLSQDHLLGR-KRAIKFVVDAGTGTTAVGLGLGAICLG-CVPLFNTL 326 (334)
Q Consensus 249 ~~~~l~~~~~~~y~IpeGgs~p~a~~G~~~la~EI~eq~~~g~-~~~D~Vvvp~GtGgt~aGl~~g~k~lg-~~~~VigV 326 (334)
+.+..+..|++ .+..||....||.+++.||.+|+ ++ ..||+||+|+|||||++|++++|+.++ ++++||||
T Consensus 118 ----l~~~~~~~~~~-~~~~n~~~~~g~~t~~~Ei~~q~--~~~~~~D~vv~~vG~Gg~~~Gv~~~~k~~~~~~~~ii~V 190 (316)
T cd06448 118 ----LAENDPGPVYV-HPFDDPLIWEGHSSMVDEIAQQL--QSQEKVDAIVCSVGGGGLLNGIVQGLERNGWGDIPVVAV 190 (316)
T ss_pred ----HHhccCCcEEe-CCCCCchhhccccHHHHHHHHHc--cccCCCCEEEEEeCchHHHHHHHHHHHhcCCCCCEEEEE
Confidence 11222133434 23468999999999999999998 32 248999999999999999999999997 99999999
Q ss_pred EeccCC
Q 019910 327 LVKLSR 332 (334)
Q Consensus 327 ~~~gs~ 332 (334)
++.|+.
T Consensus 191 ep~g~~ 196 (316)
T cd06448 191 ETEGAH 196 (316)
T ss_pred eeCCCh
Confidence 999874
No 24
>TIGR01139 cysK cysteine synthase A. This model distinguishes cysteine synthase A (CysK) from cysteine synthase B (CysM). CysM differs in having a broader specificity that also allows the use of thiosulfate to produce cysteine thiosulfonate.
Probab=100.00 E-value=1.3e-32 Score=262.85 Aligned_cols=193 Identities=15% Similarity=0.083 Sum_probs=155.5
Q ss_pred CCCCcCCCCCccccCCCCeEEEEeCCCCCCCChhHHHHHHHhhhHHHHhcCC----CEEEEeCCccchHHHHHHHHHHHh
Q 019910 90 NNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIV----TDLVTCGGCQSAHATAVAVSCAER 165 (334)
Q Consensus 90 ~~~Tp~l~~~~l~~~~g~~lyvKrDDl~~p~~gGnK~RkL~~lL~~a~~~g~----~~VVt~Gg~qsNh~~AvAaaaa~~ 165 (334)
-+.||++..++ ....|.+||+|+|++| | +||||+|++.+++..+.+.|. ++||+.+ +|||++|+|++|+++
T Consensus 5 ~g~TPl~~~~~-~~~~g~~i~~K~E~~n-p-tGS~K~R~a~~~l~~a~~~g~~~~g~~vv~aS--sGN~g~alA~~a~~~ 79 (298)
T TIGR01139 5 IGNTPLVRLNR-IEGCNANVFVKLEGRN-P-SGSVKDRIALNMIWDAEKRGLLKPGKTIVEPT--SGNTGIALAMVAAAR 79 (298)
T ss_pred cCCCceEEccc-cCCCCceEEEEEcccC-C-CCcchHHHHHHHHHHHHHcCCCCCCCEEEEeC--CChhHHHHHHHHHHc
Confidence 46688888877 4456789999999995 7 699999999999999999997 7787654 599999999999999
Q ss_pred CCeEEEEeCCCCCccccchhHHHHHCC-eEEEECCCChHHHHHHHHHHHHHHhccCCCccchhhhhhhhHhhhhhhcccc
Q 019910 166 GLKSHLLLRGEQPQILTGYNLISTIYG-KVTYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASLTAQKSRASCL 244 (334)
Q Consensus 166 Gl~~~ivv~~~~p~~~~gn~~~~~~~G-~V~~v~~~~y~~~~~~~~~~a~~~~~~~g~~~w~~~~~~~~~~~~~~~~~~~ 244 (334)
|++|+||||...++. +..+++.|| +|+.++.. |+.. +..+ .+++
T Consensus 80 Gl~~~i~vp~~~~~~---k~~~~~~~GA~v~~~~~~-~~~~-~~~~-~a~~----------------------------- 124 (298)
T TIGR01139 80 GYKLILTMPETMSIE---RRKLLKAYGAELVLTPGA-EGMK-GAIA-KAEE----------------------------- 124 (298)
T ss_pred CCeEEEEeCCccCHH---HHHHHHHcCCEEEEECCC-CCHH-HHHH-HHHH-----------------------------
Confidence 999999999987654 567899999 99999853 4311 1111 1111
Q ss_pred cchhhhhccccccCcEEEEcCCCcchhH-HHHHHHHHHHHHHhhhcCCCCCCEEEEcCCchhHHHHHHHHHHHcCCCCeE
Q 019910 245 GQMDAHKGIDNCRKKVLIVNEGAGDAVA-LLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGLGAICLGCVPLF 323 (334)
Q Consensus 245 ~~~~~~~~l~~~~~~~y~IpeGgs~p~a-~~G~~~la~EI~eq~~~g~~~~D~Vvvp~GtGgt~aGl~~g~k~lg~~~~V 323 (334)
+..+.+..|+++.+..||.+ ..||.+++.||.+|+ ++ .||+||+|+|||||++|++.+++.++++++|
T Consensus 125 --------~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~Ei~~q~--~~-~~d~vv~~vG~Gg~~~Gi~~~~~~~~~~~~v 193 (298)
T TIGR01139 125 --------IAASTPNSYFMLQQFENPANPEIHRKTTGPEIWRDT--DG-KLDAFVAGVGTGGTITGVGEVLKEQKPNIKI 193 (298)
T ss_pred --------HHHhCCCcEEcccccCCcccHHHHHHHHHHHHHHHh--CC-CCCEEEEecchhHhHHHHHHHHHhcCCCCEE
Confidence 22223344656677778875 668999999999997 32 4999999999999999999999999999999
Q ss_pred EEEEeccCCC
Q 019910 324 NTLLVKLSRG 333 (334)
Q Consensus 324 igV~~~gs~~ 333 (334)
|||++.+++.
T Consensus 194 i~Ve~~~~~~ 203 (298)
T TIGR01139 194 VAVEPAESPV 203 (298)
T ss_pred EEEecCCCcc
Confidence 9999998753
No 25
>PRK07409 threonine synthase; Validated
Probab=100.00 E-value=1.1e-32 Score=269.61 Aligned_cols=213 Identities=13% Similarity=0.137 Sum_probs=173.4
Q ss_pred cCCCCceeecccccccccCCCCCCCcccccCCCCcCCCCCccccCCCCeEEEEeCCCCCCCChhHHHHHHHhhhHHHHhc
Q 019910 60 TSPDSKIHQIKLFTTTEKHGGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDH 139 (334)
Q Consensus 60 ~~p~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~Tp~l~~~~l~~~~g~~lyvKrDDl~~p~~gGnK~RkL~~lL~~a~~~ 139 (334)
+.|-.+|+|.++||. ......+++..+.||++..+.|+...|.+||+|+|++| | +||||+|++.+++..+++.
T Consensus 4 ~~~~~~~~~~~~lp~-----~~~~~~~~l~~g~TPl~~~~~l~~~~g~~i~~K~E~~n-p-tGSfKdR~a~~~l~~a~~~ 76 (353)
T PRK07409 4 RWPGLIEAYRDRLPV-----TDDTPVVTLGEGNTPLIPAPNLSELLGVEVYVKYEGLN-P-TGSFKDRGMTMAVTKAKEE 76 (353)
T ss_pred cCccchHHHHHhCCC-----CCccCcccCCCCCCCEEEchhhHHHhCCeEEEEecCCC-C-ccchHHHHHHHHHHHHHHC
Confidence 347778999999996 22222368899999999999988888899999999995 7 6999999999999999999
Q ss_pred CCCEEEEeCCccchHHHHHHHHHHHhCCeEEEEeCCCC-CccccchhHHHHHCC-eEEEECCCChHHHHHHHHHHHHHHh
Q 019910 140 IVTDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGEQ-PQILTGYNLISTIYG-KVTYVPRTHYAHRIEMLKSYANLVA 217 (334)
Q Consensus 140 g~~~VVt~Gg~qsNh~~AvAaaaa~~Gl~~~ivv~~~~-p~~~~gn~~~~~~~G-~V~~v~~~~y~~~~~~~~~~a~~~~ 217 (334)
|.++||+++ +|||++|+|++|+.+|++|+||||... +. .+...++.|| +|+.++. .|+++.+.+++
T Consensus 77 g~~~iv~aS--sGN~g~alA~~a~~~G~~~~ivvP~~~~~~---~k~~~~~~~GA~Vi~~~~-~~~~~~~~a~~------ 144 (353)
T PRK07409 77 GAKAVICAS--TGNTSASAAAYAARAGLKAFVLIPEGKIAL---GKLAQAVMYGAEIIQIDG-NFDDALEIVRE------ 144 (353)
T ss_pred CCCEEEEEC--CcHHHHHHHHHHHHcCCCEEEEEcCCCCch---hhHHHHHhcCCEEEEECC-CHHHHHHHHHH------
Confidence 999999764 599999999999999999999999863 43 3567889999 9999985 47765443322
Q ss_pred ccCCCccchhhhhhhhHhhhhhhcccccchhhhhccccccCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhcCCCCCCEE
Q 019910 218 GNNGDVVWCNEIFEASLTAQKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVALLGVFRLLQYLSQDHLLGRKRAIKF 297 (334)
Q Consensus 218 ~~~g~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~IpeGgs~p~a~~G~~~la~EI~eq~~~g~~~~D~V 297 (334)
+....+ .++++ ..||....|+.+++.||.+|+ + ..+|+|
T Consensus 145 -----------------------------------l~~~~~-~~~~~--~~n~~~~~g~~t~~~EI~~q~--~-~~~d~i 183 (353)
T PRK07409 145 -----------------------------------LAEKYP-VTLVN--SVNPYRIEGQKTAAFEIVDAL--G-DAPDYH 183 (353)
T ss_pred -----------------------------------HHHhcC-ceecC--CCCchhhhhHHHHHHHHHHHh--C-CCCCEE
Confidence 111122 33332 358889999999999999997 3 258999
Q ss_pred EEcCCchhHHHHHHHHHHHcCC------CCeEEEEEeccCC
Q 019910 298 VVDAGTGTTAVGLGLGAICLGC------VPLFNTLLVKLSR 332 (334)
Q Consensus 298 vvp~GtGgt~aGl~~g~k~lg~------~~~VigV~~~gs~ 332 (334)
|+|+|||||++|++.+++.+.+ .++||||++.++.
T Consensus 184 v~~vG~GG~~~Gi~~g~~~~~~~~~~~~~~kvigVep~g~~ 224 (353)
T PRK07409 184 CIPVGNAGNITAYWKGYKEYHQDGKSTKLPRMMGFQAAGAA 224 (353)
T ss_pred EEeCCChHHHHHHHHHHHHHHHcCCccCCCeEEEEecCCCC
Confidence 9999999999999999998743 4899999998874
No 26
>PRK13803 bifunctional phosphoribosylanthranilate isomerase/tryptophan synthase subunit beta; Provisional
Probab=100.00 E-value=1.1e-32 Score=287.06 Aligned_cols=262 Identities=15% Similarity=0.089 Sum_probs=196.5
Q ss_pred chhhHHHHHhhhhhhccCCCCcCCCCceeeeccChHHHHHHHhhh-hhhccCCCCceeecccccccccCCCCCCCccccc
Q 019910 11 TKMAFAAIIMKKAFHSASGQLSNSPQGICNVRMSGEELLSRLLDR-KWALTSPDSKIHQIKLFTTTEKHGGGPLGGISFL 89 (334)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~p~~~~~~~~ll~~~~~~~~~~~~~~~~~ 89 (334)
.||.--+...+..|.++..+++|.|+|-|.||.+.+.+ ..|.+. +.+...|.++-.+..+|+. +.++++|+.++
T Consensus 203 ~ki~~fi~~~k~~~~~~~~~~~~~~gg~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~----~~grpTPL~~~ 277 (610)
T PRK13803 203 TLLKSFITNVKKKYLSDPAGRYGTFGGAYVPETLMANL-QELQESYTKIIKSNEFQKTFKRLLQN----YAGRPTPLTEA 277 (610)
T ss_pred HHHHHHHHHHHHhhCCCCCCcccCcCCEeCCHHHHHHH-HHHHHHHHHHhcCHHHHHHHHHHHHH----hCCCCCcceeH
Confidence 35555566667788899999999999999999999985 666664 8888999987777788875 66666555555
Q ss_pred CCCCcCCCCCccccCCCCeEEEEeCCCCCCCChhHHHHHHHhhhHHHHhcCCCEEEEeCCccchHHHHHHHHHHHhCCeE
Q 019910 90 NNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIVTDLVTCGGCQSAHATAVAVSCAERGLKS 169 (334)
Q Consensus 90 ~~~Tp~l~~~~l~~~~g~~lyvKrDDl~~p~~gGnK~RkL~~lL~~a~~~g~~~VVt~Gg~qsNh~~AvAaaaa~~Gl~~ 169 (334)
+++ ++..|.+||+||||+| | +|+||+|.....+..|++.|.+++|+..| .|||++|+|++|+++|++|
T Consensus 278 ~~L---------s~~~G~~IylK~E~ln-p-tGS~K~r~al~~~~~a~~~g~~~vi~e~g-sGnhG~A~A~~aa~~Gl~~ 345 (610)
T PRK13803 278 KRL---------SDIYGARIYLKREDLN-H-TGSHKINNALGQALLAKRMGKTRIIAETG-AGQHGVATATACALFGLKC 345 (610)
T ss_pred HHH---------HHhhCCEEEEEeCCCC-C-cccHHHHHHHHHHHHHHHcCCCEEEEecC-hHHHHHHHHHHHHHcCCcE
Confidence 554 4445789999999996 5 58999999888777788999988886333 3999999999999999999
Q ss_pred EEEeCCCCCccccchhHHHHHCC-eEEEECCCC--hHHH-HHHHHHHHHHHhccCCCccchhhhhhhhHhhhhhhccccc
Q 019910 170 HLLLRGEQPQILTGYNLISTIYG-KVTYVPRTH--YAHR-IEMLKSYANLVAGNNGDVVWCNEIFEASLTAQKSRASCLG 245 (334)
Q Consensus 170 ~ivv~~~~p~~~~gn~~~~~~~G-~V~~v~~~~--y~~~-~~~~~~~a~~~~~~~g~~~w~~~~~~~~~~~~~~~~~~~~ 245 (334)
+||||...++....|+.+++.|| +|+.|+.+. +++. +++.+ .|
T Consensus 346 ~I~m~~~~~~~~~~nv~~m~~~GA~Vi~v~~~~~~~~~a~~~a~~-------------~~-------------------- 392 (610)
T PRK13803 346 TIFMGEEDIKRQALNVERMKLLGANVIPVLSGSKTLKDAVNEAIR-------------DW-------------------- 392 (610)
T ss_pred EEEEeCCcccchhhHHHHHHHCCCEEEEECCCCCCHHHHHHHHHH-------------HH--------------------
Confidence 99999865443456888999999 999998532 3221 11111 11
Q ss_pred chhhhhccccccCcEEEEcCC-CcchhH--H-HHHHHHHHHHHHhhh--cCCCCCCEEEEcCCchhHHHHHHHHHHHcCC
Q 019910 246 QMDAHKGIDNCRKKVLIVNEG-AGDAVA--L-LGVFRLLQYLSQDHL--LGRKRAIKFVVDAGTGTTAVGLGLGAICLGC 319 (334)
Q Consensus 246 ~~~~~~~l~~~~~~~y~IpeG-gs~p~a--~-~G~~~la~EI~eq~~--~g~~~~D~Vvvp~GtGgt~aGl~~g~k~lg~ 319 (334)
..+.....|+++.. +.+|.. . .|+.+++.||.+|+. .| ..||+||+|+||||+++|++.+|+ .++
T Consensus 393 -------~~~~~~~~y~~~~~~g~~p~p~~v~~~~~tig~Ei~~Q~~~~~g-~~pD~vV~~vGgGg~~~Gi~~~f~-~~~ 463 (610)
T PRK13803 393 -------VASVPDTHYLIGSAVGPHPYPEMVAYFQSVIGEEAKEQLKEQTG-KLPDAIIACVGGGSNAIGIFYHFL-DDP 463 (610)
T ss_pred -------HHhCCCcEEEeCCcCCCCCcHHHHHHHhhHHHHHHHHHHHHhhC-CCCCEEEEEeCcCHhHHHHHHHHh-hCC
Confidence 01111233443321 123332 2 477889999999974 23 369999999999999999999995 489
Q ss_pred CCeEEEEEeccC
Q 019910 320 VPLFNTLLVKLS 331 (334)
Q Consensus 320 ~~~VigV~~~gs 331 (334)
.++||||++.|+
T Consensus 464 ~v~iigVE~~g~ 475 (610)
T PRK13803 464 SVKLIGVEAGGK 475 (610)
T ss_pred CceEEEEecCCC
Confidence 999999999886
No 27
>PRK13028 tryptophan synthase subunit beta; Provisional
Probab=100.00 E-value=2.1e-32 Score=272.05 Aligned_cols=247 Identities=13% Similarity=0.031 Sum_probs=185.7
Q ss_pred ccCCCCcCCCCceeeeccChHHHHHHHhhh-hhhccCCCCceeecccccccccCCCCCCCcccccCCCCcCCCCCccccC
Q 019910 26 SASGQLSNSPQGICNVRMSGEELLSRLLDR-KWALTSPDSKIHQIKLFTTTEKHGGGPLGGISFLNNTCPFLGDDMIMRD 104 (334)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~p~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~Tp~l~~~~l~~~ 104 (334)
.+..+++|.|+|-|.||.+.+.+ ..|... +.+...|.++-.+..+|.. +.++++|+.++++++ +.
T Consensus 9 ~~~~~~~g~~gg~~~~~~~~~~~-~~~~~~~~~~~~~~~f~~~~~~~~~~----~~g~pTPL~~~~~Ls---------~~ 74 (402)
T PRK13028 9 PDADGFFGEYGGQFVPPELKPAL-DELEAAYEEIKKDPDFIAELRYLLKH----YVGRPTPLYHAKRLS---------EE 74 (402)
T ss_pred CCCCCCcCCcCCEeCCHHHHHHH-HHHHHHHHHHhCCHHHHHHHHHHHHH----hCCCCCCeeehHHhH---------hh
Confidence 46779999999999999999885 556654 8888999987777777765 666665655555554 44
Q ss_pred C-CCeEEEEeCCCCCCCChhHHHHHHHhhhHHHHhcCCCEEEE-eCCccchHHHHHHHHHHHhCCeEEEEeCCCCCcccc
Q 019910 105 E-DRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIVTDLVT-CGGCQSAHATAVAVSCAERGLKSHLLLRGEQPQILT 182 (334)
Q Consensus 105 ~-g~~lyvKrDDl~~p~~gGnK~RkL~~lL~~a~~~g~~~VVt-~Gg~qsNh~~AvAaaaa~~Gl~~~ivv~~~~p~~~~ 182 (334)
. +.+||+||||+| | +|++|+|.....+..|++.|.+++|+ +| .|||++|+|++|+++|++|+|||+...++...
T Consensus 75 ~Gg~~IylK~Edln-p-tGS~K~r~al~~~l~A~~~G~~~vI~etg--sGnhG~A~A~aaa~~Gl~~~I~m~~~d~~~q~ 150 (402)
T PRK13028 75 LGGAQIYLKREDLN-H-TGAHKINNCLGQALLAKRMGKKRLIAETG--AGQHGVATATAAALFGLECEIYMGEVDIERQH 150 (402)
T ss_pred cCCCeEEEEECCCC-C-CcchHHHHHHHHHHHHHHcCCCeEEEecC--cHHHHHHHHHHHHHcCCCEEEEECCCcchhhH
Confidence 4 579999999996 5 68999999888888889999988775 54 49999999999999999999999986555445
Q ss_pred chhHHHHHCC-eEEEECCC--ChHHHHHHHHHHHHHHhccCCCccchhhhhhhhHhhhhhhcccccchhhhhccccccCc
Q 019910 183 GYNLISTIYG-KVTYVPRT--HYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASLTAQKSRASCLGQMDAHKGIDNCRKK 259 (334)
Q Consensus 183 gn~~~~~~~G-~V~~v~~~--~y~~~~~~~~~~a~~~~~~~g~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 259 (334)
.|+..+++|| +|+.|+.+ .+++....+. + .| . .+....
T Consensus 151 ~nv~~mr~~GAeVi~v~~g~~~~~~a~~~a~---~---------~~------------------------~---~~~~~~ 191 (402)
T PRK13028 151 PNVFRMKLLGAEVVPVTRGGRTLKEAVDSAF---E---------DY------------------------L---KDPDNT 191 (402)
T ss_pred HHHHHHHHcCCEEEEEcCCCCCHHHHHHHHH---H---------HH------------------------H---HhcCCc
Confidence 6889999999 99999852 4554322111 0 12 0 011224
Q ss_pred EEEEcCC-CcchhH---HHHHHHHHHHHHHhhhc-CCCCCCEEEEcCCchhHHHHHHHHHHHcCCCCeEEEEEecc
Q 019910 260 VLIVNEG-AGDAVA---LLGVFRLLQYLSQDHLL-GRKRAIKFVVDAGTGTTAVGLGLGAICLGCVPLFNTLLVKL 330 (334)
Q Consensus 260 ~y~IpeG-gs~p~a---~~G~~~la~EI~eq~~~-g~~~~D~Vvvp~GtGgt~aGl~~g~k~lg~~~~VigV~~~g 330 (334)
.|+++.. +.+|.. ..|+.+++.|+.+|+.. ....||+||+|+||||+++|++.+|+. .+.++||||++.|
T Consensus 192 ~y~~~s~~gp~p~p~~v~~~q~tig~Ei~~Q~~~~~g~~pD~vV~~VGgGg~~~Gi~~~f~~-~~~v~iigVE~~G 266 (402)
T PRK13028 192 HYAIGSVVGPHPFPMMVRDFQSVIGEEAREQFLEMTGRLPDAVVACVGGGSNAIGLFSAFLD-DESVRLVGVEPAG 266 (402)
T ss_pred EEEecCcCCCCCcHHHHHHHhHHHHHHHHHHHHHhhCCCCCEEEEEcCchHHHHHHHHHHHh-CCCceEEEEecCC
Confidence 4554332 223332 35788899999988631 123699999999999999999999986 5899999999988
No 28
>PRK07476 eutB threonine dehydratase; Provisional
Probab=100.00 E-value=1.4e-32 Score=265.90 Aligned_cols=187 Identities=13% Similarity=0.100 Sum_probs=152.3
Q ss_pred CCCcCCCCCccccCCCCeEEEEeCCCCCCCChhHHHHHHHhhhHHHHhcCCCE-EEEeCCccchHHHHHHHHHHHhCCeE
Q 019910 91 NTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIVTD-LVTCGGCQSAHATAVAVSCAERGLKS 169 (334)
Q Consensus 91 ~~Tp~l~~~~l~~~~g~~lyvKrDDl~~p~~gGnK~RkL~~lL~~a~~~g~~~-VVt~Gg~qsNh~~AvAaaaa~~Gl~~ 169 (334)
+-||++..+.+++..|.+||+|+|++| | +||||+|++.+++..+.+.+.+. ||+++ +|||++|+|++|+++|++|
T Consensus 18 ~~TPl~~~~~l~~~~g~~l~~K~E~~n-p-tGS~K~R~a~~~i~~a~~~~~~~gvv~aS--sGN~g~alA~~a~~~G~~~ 93 (322)
T PRK07476 18 RRTPLVASASLSARAGVPVWLKLETLQ-P-TGSFKLRGATNALLSLSAQERARGVVTAS--TGNHGRALAYAARALGIRA 93 (322)
T ss_pred CCCCceechhhHHhhCCeEEEEEccCC-C-CCCchHHHHHHHHHhhhhhhhCCeEEEEC--CChHHHHHHHHHHHhCCCE
Confidence 458888888888888899999999995 7 79999999999999988888755 88764 5999999999999999999
Q ss_pred EEEeCCCCCccccchhHHHHHCC-eEEEECCCChHHHHHHHHHHHHHHhccCCCccchhhhhhhhHhhhhhhcccccchh
Q 019910 170 HLLLRGEQPQILTGYNLISTIYG-KVTYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASLTAQKSRASCLGQMD 248 (334)
Q Consensus 170 ~ivv~~~~p~~~~gn~~~~~~~G-~V~~v~~~~y~~~~~~~~~~a~~~~~~~g~~~w~~~~~~~~~~~~~~~~~~~~~~~ 248 (334)
++|||...|+. +...++.|| +|+.++. .|++..+.+.+ +
T Consensus 94 ~i~vp~~~~~~---k~~~~~~~GA~V~~~~~-~~~~~~~~a~~----~-------------------------------- 133 (322)
T PRK07476 94 TICMSRLVPAN---KVDAIRALGAEVRIVGR-SQDDAQAEVER----L-------------------------------- 133 (322)
T ss_pred EEEeCCCCCHH---HHHHHHHcCCEEEEECC-CHHHHHHHHHH----H--------------------------------
Confidence 99999988754 667899999 9999985 46644333221 1
Q ss_pred hhhccccccCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhcCCCCCCEEEEcCCchhHHHHHHHHHHHcCCCCeEEEEEe
Q 019910 249 AHKGIDNCRKKVLIVNEGAGDAVALLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGLGAICLGCVPLFNTLLV 328 (334)
Q Consensus 249 ~~~~l~~~~~~~y~IpeGgs~p~a~~G~~~la~EI~eq~~~g~~~~D~Vvvp~GtGgt~aGl~~g~k~lg~~~~VigV~~ 328 (334)
....+.+|+.| ..||....|+.+++.||.+|+ +.+|+||+|+|||||++|++.+++.++++++||||++
T Consensus 134 -----~~~~g~~~~~~--~~n~~~~~g~~t~~~Ei~~Q~----~~~d~iv~~vG~GG~~~Gv~~~~k~~~~~~~vigVe~ 202 (322)
T PRK07476 134 -----VREEGLTMVPP--FDDPRIIAGQGTIGLEILEAL----PDVATVLVPLSGGGLASGVAAAVKAIRPAIRVIGVSM 202 (322)
T ss_pred -----HHhcCCEEeCC--CCCcceeechhHHHHHHHHhC----cCCCEEEEEcChHHHHHHHHHHHHHhCCCCEEEEEEE
Confidence 11122344332 346777788999999999997 2489999999999999999999999999999999999
Q ss_pred ccCC
Q 019910 329 KLSR 332 (334)
Q Consensus 329 ~gs~ 332 (334)
.++.
T Consensus 203 ~~~~ 206 (322)
T PRK07476 203 ERGA 206 (322)
T ss_pred CCch
Confidence 8753
No 29
>cd00640 Trp-synth-beta_II Tryptophan synthase beta superfamily (fold type II); this family of pyridoxal phosphate (PLP)-dependent enzymes catalyzes beta-replacement and beta-elimination reactions. This CD corresponds to aminocyclopropane-1-carboxylate deaminase (ACCD), tryptophan synthase beta chain (Trp-synth_B), cystathionine beta-synthase (CBS), O-acetylserine sulfhydrylase (CS), serine dehydratase (Ser-dehyd), threonine dehydratase (Thr-dehyd), diaminopropionate ammonia lyase (DAL), and threonine synthase (Thr-synth). ACCD catalyzes the conversion of 1-aminocyclopropane-1-carboxylate to alpha-ketobutyrate and ammonia. Tryptophan synthase folds into a tetramer, where the beta chain is the catalytic PLP-binding subunit and catalyzes the formation of L-tryptophan from indole and L-serine. CBS is a tetrameric hemeprotein that catalyzes condensation of serine and homocysteine to cystathionine. CS is a homodimer that catalyzes the formation of L-cysteine from O-acetyl-L-serine. Ser-dehy
Probab=100.00 E-value=1.3e-31 Score=248.17 Aligned_cols=184 Identities=17% Similarity=0.151 Sum_probs=154.0
Q ss_pred CcCCCCCccccCCCCeEEEEeCCCCCCCChhHHHHHHHhhhHHHHhcC---CCEEEEeCCccchHHHHHHHHHHHhCCeE
Q 019910 93 CPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHI---VTDLVTCGGCQSAHATAVAVSCAERGLKS 169 (334)
Q Consensus 93 Tp~l~~~~l~~~~g~~lyvKrDDl~~p~~gGnK~RkL~~lL~~a~~~g---~~~VVt~Gg~qsNh~~AvAaaaa~~Gl~~ 169 (334)
||++..+.+++..+.+||+|+|+++ | +||||+|++.+++..+.+.| .++||++++ |||+.|+|++|+++|++|
T Consensus 1 TPl~~~~~l~~~~~~~l~~K~e~~~-p-tgS~K~R~a~~~l~~a~~~g~~~~~~vv~~ss--GN~g~alA~~a~~~g~~~ 76 (244)
T cd00640 1 TPLVRLKRLSKLGGANIYLKLEFLN-P-TGSFKDRGALNLILLAEEEGKLPKGVIIESTG--GNTGIALAAAAARLGLKC 76 (244)
T ss_pred CCeeEccccccccCCEEEEEecccC-C-cCCcHHHHHHHHHHHHHHcCCCCCCEEEEeCC--cHHHHHHHHHHHHcCCCE
Confidence 6777777777767889999999995 7 49999999999999999998 678887654 999999999999999999
Q ss_pred EEEeCCCCCccccchhHHHHHCC-eEEEECCCChHHHHHHHHHHHHHHhccCCCccchhhhhhhhHhhhhhhcccccchh
Q 019910 170 HLLLRGEQPQILTGYNLISTIYG-KVTYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASLTAQKSRASCLGQMD 248 (334)
Q Consensus 170 ~ivv~~~~p~~~~gn~~~~~~~G-~V~~v~~~~y~~~~~~~~~~a~~~~~~~g~~~w~~~~~~~~~~~~~~~~~~~~~~~ 248 (334)
++|+|...++ .+..+++.+| +|+.++.. |+++....++
T Consensus 77 ~v~~p~~~~~---~~~~~~~~~Ga~v~~~~~~-~~~~~~~a~~------------------------------------- 115 (244)
T cd00640 77 TIVMPEGASP---EKVAQMRALGAEVVLVPGD-FDDAIALAKE------------------------------------- 115 (244)
T ss_pred EEEECCCCCH---HHHHHHHHCCCEEEEECCC-HHHHHHHHHH-------------------------------------
Confidence 9999998754 4778999999 99999865 6654443322
Q ss_pred hhhccccccCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhcCCCCCCEEEEcCCchhHHHHHHHHHHHcCCCCeEEEEEe
Q 019910 249 AHKGIDNCRKKVLIVNEGAGDAVALLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGLGAICLGCVPLFNTLLV 328 (334)
Q Consensus 249 ~~~~l~~~~~~~y~IpeGgs~p~a~~G~~~la~EI~eq~~~g~~~~D~Vvvp~GtGgt~aGl~~g~k~lg~~~~VigV~~ 328 (334)
+.+..++.|++++ +.|+...+|+.+++.||.+|+. +..||+||+|+|||||++|++.+++..++.++|++|++
T Consensus 116 ----~~~~~~~~~~~~~-~~n~~~~~g~~~~~~Ei~~q~~--~~~~d~ivvp~GtGg~~~G~~~~~~~~~~~~~ii~v~~ 188 (244)
T cd00640 116 ----LAEEDPGAYYVNQ-FDNPANIAGQGTIGLEILEQLG--GQKPDAVVVPVGGGGNIAGIARALKELLPNVKVIGVEP 188 (244)
T ss_pred ----HHHhCCCCEecCC-CCCHHHHHHHHHHHHHHHHHcC--CCCCCEEEEecCccHHHHHHHHHHHHhCCCCEEEEEee
Confidence 1122245677754 4899999999999999999983 22599999999999999999999999999999999986
No 30
>TIGR01138 cysM cysteine synthase B. Alternate name: O-acetylserine (thiol)-lyase
Probab=100.00 E-value=9.5e-32 Score=256.79 Aligned_cols=190 Identities=15% Similarity=0.104 Sum_probs=151.0
Q ss_pred CCCCcCCCCCccccCCCCeEEEEeCCCCCCCChhHHHHHHHhhhHHHHhcCC----CEEEEeCCccchHHHHHHHHHHHh
Q 019910 90 NNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIV----TDLVTCGGCQSAHATAVAVSCAER 165 (334)
Q Consensus 90 ~~~Tp~l~~~~l~~~~g~~lyvKrDDl~~p~~gGnK~RkL~~lL~~a~~~g~----~~VVt~Gg~qsNh~~AvAaaaa~~ 165 (334)
-+.||+++.+.+++..|.+||+|+|++ +| +||||+|.+.+++..+.+.|. ++||+++ +|||+.|+|++|+++
T Consensus 6 ig~TPl~~~~~l~~~~g~~i~~K~E~~-np-tGS~K~R~a~~~v~~a~~~g~~~~g~~vv~aS--sGN~g~alA~~a~~~ 81 (290)
T TIGR01138 6 VGNTPLVRLQRMGPENGSEVWLKLEGN-NP-AGSVKDRPALSMIVEAEKRGEIKPGDVLIEAT--SGNTGIALAMIAALK 81 (290)
T ss_pred CCCCceEEccccccCCCCeEEEEEccC-CC-CccHHHHHHHHHHHHHHHcCCCCCCCEEEEEC--CChHHHHHHHHHHHc
Confidence 367999998888888889999999999 57 699999999999999999987 7788754 599999999999999
Q ss_pred CCeEEEEeCCCCCccccchhHHHHHCC-eEEEECCC-ChHHHHHHHHHHHHHHhccCCCccchhhhhhhhHhhhhhhccc
Q 019910 166 GLKSHLLLRGEQPQILTGYNLISTIYG-KVTYVPRT-HYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASLTAQKSRASC 243 (334)
Q Consensus 166 Gl~~~ivv~~~~p~~~~gn~~~~~~~G-~V~~v~~~-~y~~~~~~~~~~a~~~~~~~g~~~w~~~~~~~~~~~~~~~~~~ 243 (334)
|++|++|||...++. +..+++.|| +|+.++.. .+++..+.. ++++.
T Consensus 82 G~~~~i~~p~~~~~~---k~~~~~~~GA~v~~v~~~~~~~~~~~~a----~~l~~------------------------- 129 (290)
T TIGR01138 82 GYRMKLLMPDNMSQE---RKAAMRAYGAELILVTKEEGMEGARDLA----LELAN------------------------- 129 (290)
T ss_pred CCeEEEEECCCCCHH---HHHHHHHcCCEEEEeCCCCChHHHHHHH----HHHHH-------------------------
Confidence 999999999987654 567899999 99999853 244332222 22111
Q ss_pred ccchhhhhccccccCcEEEEcCCCcchhHHH-HHHHHHHHHHHhhhcCCCCCCEEEEcCCchhHHHHHHHHHHHcCCCCe
Q 019910 244 LGQMDAHKGIDNCRKKVLIVNEGAGDAVALL-GVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGLGAICLGCVPL 322 (334)
Q Consensus 244 ~~~~~~~~~l~~~~~~~y~IpeGgs~p~a~~-G~~~la~EI~eq~~~g~~~~D~Vvvp~GtGgt~aGl~~g~k~lg~~~~ 322 (334)
..+..| + .+..|+.... +|.+++.||++|+ ++ .+|+||+|+|||||++|++.+++.+++.++
T Consensus 130 ------------~~~~~~-~-~~~~~~~~~~~~~~t~~~Ei~~q~--~~-~~d~iv~~vG~Gg~~~Gv~~~lk~~~~~~k 192 (290)
T TIGR01138 130 ------------RGEGKL-L-DQFNNPDNPYAHYTSTGPEIWQQT--GG-RITHFVSSMGTTGTIMGVSRFLKEQNPPVQ 192 (290)
T ss_pred ------------hCCCCC-C-CccCCcccHHHHhHhHHHHHHHHc--CC-CCCEEEECCCchHHHHHHHHHHHHhCCCCE
Confidence 122222 2 2233333333 3789999999997 33 589999999999999999999999999999
Q ss_pred EEEEEeccCC
Q 019910 323 FNTLLVKLSR 332 (334)
Q Consensus 323 VigV~~~gs~ 332 (334)
||||++.++.
T Consensus 193 vi~Vep~~~~ 202 (290)
T TIGR01138 193 IVGLQPEEGS 202 (290)
T ss_pred EEEEeCCCCC
Confidence 9999998874
No 31
>PRK06110 hypothetical protein; Provisional
Probab=100.00 E-value=4.1e-32 Score=262.58 Aligned_cols=186 Identities=14% Similarity=0.093 Sum_probs=152.4
Q ss_pred CCCcCCCCCccccCCCCeEEEEeCCCCCCCChhHHHHHHHhhhHHHHhcC--CCEEEEeCCccchHHHHHHHHHHHhCCe
Q 019910 91 NTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHI--VTDLVTCGGCQSAHATAVAVSCAERGLK 168 (334)
Q Consensus 91 ~~Tp~l~~~~l~~~~g~~lyvKrDDl~~p~~gGnK~RkL~~lL~~a~~~g--~~~VVt~Gg~qsNh~~AvAaaaa~~Gl~ 168 (334)
+-||++..+.|++..|.+||+|+|++| | +||||+|++.+++..+.+.+ .++||+.+ +||||+|+|++|+++|++
T Consensus 20 ~~TPl~~~~~l~~~~g~~i~~K~E~~n-p-tGS~K~Rga~~~l~~a~~~~~~~~~vv~aS--sGN~g~alA~~a~~~G~~ 95 (322)
T PRK06110 20 PPTPQYRWPLLAERLGCEVWVKHENHT-P-TGAFKVRGGLVYFDRLARRGPRVRGVISAT--RGNHGQSVAFAARRHGLA 95 (322)
T ss_pred cCCCcccchhHHHHhCCeEEEEeccCC-C-cCCcHHHHHHHHHHHhhhhcCCCceEEEEC--CCHHHHHHHHHHHHcCCC
Confidence 568888888888888899999999995 7 68999999999999887664 46777543 699999999999999999
Q ss_pred EEEEeCCCCCccccchhHHHHHCC-eEEEECCCChHHHHHHHHHHHHHHhccCCCccchhhhhhhhHhhhhhhcccccch
Q 019910 169 SHLLLRGEQPQILTGYNLISTIYG-KVTYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASLTAQKSRASCLGQM 247 (334)
Q Consensus 169 ~~ivv~~~~p~~~~gn~~~~~~~G-~V~~v~~~~y~~~~~~~~~~a~~~~~~~g~~~w~~~~~~~~~~~~~~~~~~~~~~ 247 (334)
|+||||...++. +..+++.|| +|+.++. .|++..+...+
T Consensus 96 ~~ivvp~~~~~~---k~~~i~~~GA~V~~~~~-~~~~~~~~a~~------------------------------------ 135 (322)
T PRK06110 96 ATIVVPHGNSVE---KNAAMRALGAELIEHGE-DFQAAREEAAR------------------------------------ 135 (322)
T ss_pred EEEEEcCCCCHH---HHHHHHHcCCEEEEECC-CHHHHHHHHHH------------------------------------
Confidence 999999987654 457889999 9999974 46643332211
Q ss_pred hhhhccccccCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhcCCCCCCEEEEcCCchhHHHHHHHHHHHcCCCCeEEEEE
Q 019910 248 DAHKGIDNCRKKVLIVNEGAGDAVALLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGLGAICLGCVPLFNTLL 327 (334)
Q Consensus 248 ~~~~~l~~~~~~~y~IpeGgs~p~a~~G~~~la~EI~eq~~~g~~~~D~Vvvp~GtGgt~aGl~~g~k~lg~~~~VigV~ 327 (334)
+.... ..|++|.- +|....||.+++.||.+|+ + .+|+||+|+|||||++|++.+++.++|.++|+||+
T Consensus 136 -----~~~~~-~~~~~~~~--~~~~~~G~~t~~~Ei~~q~--~--~~D~vv~pvG~Gg~~~Gv~~~~k~~~~~~~vi~Ve 203 (322)
T PRK06110 136 -----LAAER-GLHMVPSF--HPDLVRGVATYALELFRAV--P--DLDVVYVPIGMGSGICGAIAARDALGLKTRIVGVV 203 (322)
T ss_pred -----HHHhc-CCEEcCCC--CChHHhccchHHHHHHhhC--C--CCCEEEEecCHHHHHHHHHHHHHHhCCCCEEEEEe
Confidence 11111 35667643 6778899999999999997 2 58999999999999999999999999999999999
Q ss_pred eccCC
Q 019910 328 VKLSR 332 (334)
Q Consensus 328 ~~gs~ 332 (334)
+.++.
T Consensus 204 p~~~~ 208 (322)
T PRK06110 204 SAHAP 208 (322)
T ss_pred eCCCh
Confidence 98875
No 32
>PLN00011 cysteine synthase
Probab=100.00 E-value=5.9e-32 Score=261.83 Aligned_cols=193 Identities=16% Similarity=0.070 Sum_probs=151.6
Q ss_pred cCCCCcCCCCCccccCCCCeEEEEeCCCCCCCChhHHHHHHHhhhHHHHhcC-----CCEEEEeCCccchHHHHHHHHHH
Q 019910 89 LNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHI-----VTDLVTCGGCQSAHATAVAVSCA 163 (334)
Q Consensus 89 ~~~~Tp~l~~~~l~~~~g~~lyvKrDDl~~p~~gGnK~RkL~~lL~~a~~~g-----~~~VVt~Gg~qsNh~~AvAaaaa 163 (334)
..+-||+++.+++....|.+||+|+|++| | +||||+|++.+++..|.+.| .++||+.+ +|||++|+|++|+
T Consensus 14 ~~g~TPl~~l~~l~~~~g~~i~~K~E~~n-P-tGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~aS--sGN~g~alA~~a~ 89 (323)
T PLN00011 14 LIGNTPMVYLNNIVDGCVARIAAKLEMME-P-CSSVKDRIAYSMIKDAEDKGLITPGKSTLIEAT--AGNTGIGLACIGA 89 (323)
T ss_pred HhCCCceEEccccCCCCCceEEEEecccC-C-ccccchHHHHHHHHHHHHcCCCCCCCcEEEEeC--CChHHHHHHHHHH
Confidence 45678888877766555689999999995 7 79999999999999999988 68899743 6999999999999
Q ss_pred HhCCeEEEEeCCCCCccccchhHHHHHCC-eEEEECCCChHHHHHHHHHHHHHHhccCCCccchhhhhhhhHhhhhhhcc
Q 019910 164 ERGLKSHLLLRGEQPQILTGYNLISTIYG-KVTYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASLTAQKSRAS 242 (334)
Q Consensus 164 ~~Gl~~~ivv~~~~p~~~~gn~~~~~~~G-~V~~v~~~~y~~~~~~~~~~a~~~~~~~g~~~w~~~~~~~~~~~~~~~~~ 242 (334)
.+|++|++|||...++ .|..+++.|| +|+.++.. ++..+.+ +. ++
T Consensus 90 ~~G~~~~ivvp~~~~~---~k~~~i~~~GA~V~~~~~~-~~~~~~~-~~-a~---------------------------- 135 (323)
T PLN00011 90 ARGYKVILVMPSTMSL---ERRIILRALGAEVHLTDQS-IGLKGML-EK-AE---------------------------- 135 (323)
T ss_pred HcCCeEEEEeCCCCCH---HHHHHHHHcCCEEEEECCC-cChHHHH-HH-HH----------------------------
Confidence 9999999999998764 4778999999 99999853 3321111 10 11
Q ss_pred cccchhhhhccccccCcEEEEcCCCcchhH-HHHHHHHHHHHHHhhhcCCCCCCEEEEcCCchhHHHHHHHHHHHcCCCC
Q 019910 243 CLGQMDAHKGIDNCRKKVLIVNEGAGDAVA-LLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGLGAICLGCVP 321 (334)
Q Consensus 243 ~~~~~~~~~~l~~~~~~~y~IpeGgs~p~a-~~G~~~la~EI~eq~~~g~~~~D~Vvvp~GtGgt~aGl~~g~k~lg~~~ 321 (334)
++....+. ++++.+..|+.. ..||.+++.||.+|+ ++ .||+||+|+|||||++|++.+++.+++++
T Consensus 136 ---------~l~~~~~~-~~~~~~~~n~~n~~~~~~t~~~EI~~q~--~~-~~D~iv~~vGtGGt~aGi~~~lk~~~~~~ 202 (323)
T PLN00011 136 ---------EILSKTPG-GYIPQQFENPANPEIHYRTTGPEIWRDS--AG-KVDILVAGVGTGGTATGVGKFLKEKNKDI 202 (323)
T ss_pred ---------HHHHhCCC-eEEeccccCCccHHHHHHHHHHHHHHhc--CC-CCCEEEEeCCchHHHHHHHHHHHhhCCCC
Confidence 12111122 345566544433 237999999999997 32 59999999999999999999999999999
Q ss_pred eEEEEEeccCC
Q 019910 322 LFNTLLVKLSR 332 (334)
Q Consensus 322 ~VigV~~~gs~ 332 (334)
+||||++.++.
T Consensus 203 kvigVe~~~~~ 213 (323)
T PLN00011 203 KVCVVEPVESA 213 (323)
T ss_pred EEEEEecCCCc
Confidence 99999999875
No 33
>TIGR00263 trpB tryptophan synthase, beta subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. the beta chain contains the functional domain for or the synthesis of tryptophan from indole and serine. The enzyme requires pyridoxal-phosphate as a cofactor. The pyridoxal-P attachment site is contained within the conserved region [LIVM]-x-H-x-G-[STA]-H-K-x-N] [K is the pyridoxal-P attachment site] which is present between residues 90-100 of the model.
Probab=100.00 E-value=1.1e-31 Score=265.95 Aligned_cols=243 Identities=14% Similarity=0.030 Sum_probs=174.8
Q ss_pred CCcCCCCceeeeccChHHHHHHHhh-hhhhccCCCCceeecccccccccCCCCCCCcccccCCCCcCCCCCccccCCC-C
Q 019910 30 QLSNSPQGICNVRMSGEELLSRLLD-RKWALTSPDSKIHQIKLFTTTEKHGGGPLGGISFLNNTCPFLGDDMIMRDED-R 107 (334)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~p~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~Tp~l~~~~l~~~~g-~ 107 (334)
+|+|.|+|-|.||.+...+ ..|.. -+..+.+|++.-....+++. +..+-||++..+.|++..| .
T Consensus 1 ~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~TPL~~~~~l~~~~g~~ 66 (385)
T TIGR00263 1 GYFGDFGGQYVPETLMPAL-EELEAAFEDAKADPAFWAELNELLRN-------------YAGRPTPLTFAPNLTEALGGA 66 (385)
T ss_pred CCCCCcCCEeCCHHHHHHH-HHHHHHHHHHhcCHHHHHHHHHHHHH-------------hCCCCCCceehHHHHHHhCCC
Confidence 5889999999999887763 55554 36666777763332344442 2334577777777777766 7
Q ss_pred eEEEEeCCCCCCCChhHHHHHHHhhhHHHHhcCCCEEEE-eCCccchHHHHHHHHHHHhCCeEEEEeCCCCCccccchhH
Q 019910 108 CFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIVTDLVT-CGGCQSAHATAVAVSCAERGLKSHLLLRGEQPQILTGYNL 186 (334)
Q Consensus 108 ~lyvKrDDl~~p~~gGnK~RkL~~lL~~a~~~g~~~VVt-~Gg~qsNh~~AvAaaaa~~Gl~~~ivv~~~~p~~~~gn~~ 186 (334)
+||+|+|++| | +|+||+|.+...+..+++.|.+++|+ +| +||||+|+|++|+++|++|+||||....+....|+.
T Consensus 67 ~iy~K~E~~n-p-tGS~K~R~a~~~~~~a~~~g~~~vi~e~s--sGN~G~alA~~a~~~Gl~~~Iv~p~~~~~~~~~~~~ 142 (385)
T TIGR00263 67 KIYLKREDLN-H-TGAHKINNALGQALLAKRMGKKRIIAETG--AGQHGVATATAAALLGLDCEVYMGAEDVERQKPNVF 142 (385)
T ss_pred eEEEEeCCCC-C-CccchHHHHHHHHHHHHHcCCCEEEEEcC--cHHHHHHHHHHHHHcCCCEEEEecCCcccccchHHH
Confidence 9999999995 7 68999999888888888889888775 54 499999999999999999999999753222335788
Q ss_pred HHHHCC-eEEEECCC--ChHHHHHHHHHHHHHHhccCCCccchhhhhhhhHhhhhhhcccccchhhhhccccccCcEEEE
Q 019910 187 ISTIYG-KVTYVPRT--HYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASLTAQKSRASCLGQMDAHKGIDNCRKKVLIV 263 (334)
Q Consensus 187 ~~~~~G-~V~~v~~~--~y~~~~~~~~~~a~~~~~~~g~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~I 263 (334)
+++.|| +|+.++.+ .|++. ....++ ++.++.++.+++
T Consensus 143 ~~~~~GA~Vv~v~~~~~~~~~a---~~~~~~-------------------------------------~~~~~~~~~~y~ 182 (385)
T TIGR00263 143 RMELLGAKVIPVTSGSGTLKDA---VNEALR-------------------------------------DWVTSVDDTHYV 182 (385)
T ss_pred HHHHcCCEEEEECCCCCCHHHH---HHHHHH-------------------------------------HHHHhcCCceEE
Confidence 999999 99999742 34432 111111 011122233333
Q ss_pred cCCCc--chh--H-HHHHHHHHHHHHHhhhcC-CCCCCEEEEcCCchhHHHHHHHHHHHcCCCCeEEEEEeccC
Q 019910 264 NEGAG--DAV--A-LLGVFRLLQYLSQDHLLG-RKRAIKFVVDAGTGTTAVGLGLGAICLGCVPLFNTLLVKLS 331 (334)
Q Consensus 264 peGgs--~p~--a-~~G~~~la~EI~eq~~~g-~~~~D~Vvvp~GtGgt~aGl~~g~k~lg~~~~VigV~~~gs 331 (334)
..+.. +|. . ..|+.+++.||.+|+... +..||+||+|+|||||++|++.++.. .+.++||||++.||
T Consensus 183 ~~~~~~~~p~~~~~~~~~~t~g~Ei~~Ql~~~~~~~pD~vv~~vG~Gg~~~Gv~~~~~~-~~~~~iigVe~~gs 255 (385)
T TIGR00263 183 LGSAVGPHPFPTMVRDFQSVIGEEAKEQILEQEGRLPDAVIACVGGGSNAIGIFYAFID-DPSVQLIGVEAGGL 255 (385)
T ss_pred eCCcCCCCCchHHHHHHhhHHHHHHHHHHHhhhCCCCCEEEEEeCchHHHHHHHHHHhh-CCCCeEEEEEeCCC
Confidence 22222 222 2 467888999999997421 23589999999999999999999954 79999999999986
No 34
>PRK08526 threonine dehydratase; Provisional
Probab=100.00 E-value=7.9e-32 Score=268.37 Aligned_cols=188 Identities=15% Similarity=0.151 Sum_probs=152.5
Q ss_pred CCCcCCCCCccccCCCCeEEEEeCCCCCCCChhHHHHHHHhhhHHHHh-cCCCEEEEeCCccchHHHHHHHHHHHhCCeE
Q 019910 91 NTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLED-HIVTDLVTCGGCQSAHATAVAVSCAERGLKS 169 (334)
Q Consensus 91 ~~Tp~l~~~~l~~~~g~~lyvKrDDl~~p~~gGnK~RkL~~lL~~a~~-~g~~~VVt~Gg~qsNh~~AvAaaaa~~Gl~~ 169 (334)
.-||++.+++|++..|.+||+|+|++| | +||||+|...+.+..+.+ .+.++||+++ +|||++++|++|+++|++|
T Consensus 19 ~~TPl~~~~~Ls~~~g~~iylK~E~lq-p-tGSfK~RgA~n~i~~l~~~~~~~gVV~aS--aGNhg~avA~aa~~~Gi~~ 94 (403)
T PRK08526 19 NKTPFAYAPFLSKISGAEVYLKKENLQ-I-TGAYKIRGAYNKIANLSEEQKQHGVIAAS--AGNHAQGVAISAKKFGIKA 94 (403)
T ss_pred CCCCccchHHHHHHhCCeEEEEecCCC-C-CCCCHHHHHHHHHHhccHhhcCCEEEEEC--ccHHHHHHHHHHHHcCCCE
Confidence 458888888888888999999999996 6 689999999888876554 4568899754 5999999999999999999
Q ss_pred EEEeCCCCCccccchhHHHHHCC-eEEEECCCChHHHHHHHHHHHHHHhccCCCccchhhhhhhhHhhhhhhcccccchh
Q 019910 170 HLLLRGEQPQILTGYNLISTIYG-KVTYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASLTAQKSRASCLGQMD 248 (334)
Q Consensus 170 ~ivv~~~~p~~~~gn~~~~~~~G-~V~~v~~~~y~~~~~~~~~~a~~~~~~~g~~~w~~~~~~~~~~~~~~~~~~~~~~~ 248 (334)
+||||...|.. +...++.|| +|+.++. .|++..+...+ +
T Consensus 95 ~IvmP~~~p~~---k~~~~r~~GA~Vv~~g~-~~~~a~~~a~~----~-------------------------------- 134 (403)
T PRK08526 95 VIVMPEATPLL---KVSGTKALGAEVILKGD-NYDEAYAFALE----Y-------------------------------- 134 (403)
T ss_pred EEEEcCCCCHH---HHHHHHhCCCEEEEECC-CHHHHHHHHHH----H--------------------------------
Confidence 99999988765 456799999 9999985 47754333221 1
Q ss_pred hhhccccccCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhcCCCCCCEEEEcCCchhHHHHHHHHHHHcCCCCeEEEEEe
Q 019910 249 AHKGIDNCRKKVLIVNEGAGDAVALLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGLGAICLGCVPLFNTLLV 328 (334)
Q Consensus 249 ~~~~l~~~~~~~y~IpeGgs~p~a~~G~~~la~EI~eq~~~g~~~~D~Vvvp~GtGgt~aGl~~g~k~lg~~~~VigV~~ 328 (334)
....+.+|+.| ..||....|+.+++.||.+|+ + .+|+||+|+||||+++|++.++|.++|.++||||++
T Consensus 135 -----a~~~g~~~v~p--~~~~~~i~G~gtia~EI~eq~--~--~~D~vvvpvGgGGl~aGia~~~k~~~p~~kvigVep 203 (403)
T PRK08526 135 -----AKENNLTFIHP--FEDEEVMAGQGTIALEMLDEI--S--DLDMVVVPVGGGGLISGIASAAKQINPNIKIIGVGA 203 (403)
T ss_pred -----HHhcCCEeeCC--CCCHHHHhhhHHHHHHHHHhc--C--CCCEEEEecChHHHHHHHHHHHHHhCCCCEEEEEEE
Confidence 11122445444 346677788888999999997 2 589999999999999999999999999999999999
Q ss_pred ccCCC
Q 019910 329 KLSRG 333 (334)
Q Consensus 329 ~gs~~ 333 (334)
.+++.
T Consensus 204 ~~~~~ 208 (403)
T PRK08526 204 KGAPA 208 (403)
T ss_pred CCCCh
Confidence 99864
No 35
>PRK12483 threonine dehydratase; Reviewed
Probab=99.98 E-value=1.1e-31 Score=274.53 Aligned_cols=189 Identities=16% Similarity=0.144 Sum_probs=153.8
Q ss_pred CCCcCCCCCccccCCCCeEEEEeCCCCCCCChhHHHHHHHhhhHHHH-hcCCCEEEEeCCccchHHHHHHHHHHHhCCeE
Q 019910 91 NTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLE-DHIVTDLVTCGGCQSAHATAVAVSCAERGLKS 169 (334)
Q Consensus 91 ~~Tp~l~~~~l~~~~g~~lyvKrDDl~~p~~gGnK~RkL~~lL~~a~-~~g~~~VVt~Gg~qsNh~~AvAaaaa~~Gl~~ 169 (334)
.-||++.+++|++..|.+||+|+|++| | +||||+|.+.+.+..+. +.+.++||++++ ||||+++|++|+++|++|
T Consensus 36 ~~TPL~~~~~Ls~~~g~~IylK~E~lq-p-tGSfK~RGA~n~i~~l~~~~~~~GVV~aSa--GNha~gvA~aA~~lGi~~ 111 (521)
T PRK12483 36 RETPLQRAPNLSARLGNQVLLKREDLQ-P-VFSFKIRGAYNKMARLPAEQLARGVITASA--GNHAQGVALAAARLGVKA 111 (521)
T ss_pred CCCCeeEchhhhHhhCCEEEEEEcCCC-C-CCchHHHHHHHHHHHhHHHHhcCcEEEECC--CHHHHHHHHHHHHhCCCE
Confidence 458999998899989999999999995 7 68999999888776543 456678998765 999999999999999999
Q ss_pred EEEeCCCCCccccchhHHHHHCC-eEEEECCCChHHHHHHHHHHHHHHhccCCCccchhhhhhhhHhhhhhhcccccchh
Q 019910 170 HLLLRGEQPQILTGYNLISTIYG-KVTYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASLTAQKSRASCLGQMD 248 (334)
Q Consensus 170 ~ivv~~~~p~~~~gn~~~~~~~G-~V~~v~~~~y~~~~~~~~~~a~~~~~~~g~~~w~~~~~~~~~~~~~~~~~~~~~~~ 248 (334)
+||||...|.. ++..++.|| +|+.++. +|++..+...+ ++.+
T Consensus 112 ~IvmP~~tp~~---Kv~~~r~~GAeVil~g~-~~d~a~~~A~~----la~e----------------------------- 154 (521)
T PRK12483 112 VIVMPRTTPQL---KVDGVRAHGGEVVLHGE-SFPDALAHALK----LAEE----------------------------- 154 (521)
T ss_pred EEEECCCCCHH---HHHHHHHCCCEEEEECC-CHHHHHHHHHH----HHHh-----------------------------
Confidence 99999998765 567899999 9999985 57754443221 1111
Q ss_pred hhhccccccCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhcCCCCCCEEEEcCCchhHHHHHHHHHHHcCCCCeEEEEEe
Q 019910 249 AHKGIDNCRKKVLIVNEGAGDAVALLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGLGAICLGCVPLFNTLLV 328 (334)
Q Consensus 249 ~~~~l~~~~~~~y~IpeGgs~p~a~~G~~~la~EI~eq~~~g~~~~D~Vvvp~GtGgt~aGl~~g~k~lg~~~~VigV~~ 328 (334)
.+..|+.| ..||..+.|+.+++.||++|+ ++ .+|+||||+|||||++|++.++|.++|+++||||++
T Consensus 155 --------~g~~~v~p--fdd~~viaGqgTig~EI~eQ~--~~-~~D~VvvpvGgGGliaGia~~~K~~~p~vkVIGVep 221 (521)
T PRK12483 155 --------EGLTFVPP--FDDPDVIAGQGTVAMEILRQH--PG-PLDAIFVPVGGGGLIAGIAAYVKYVRPEIKVIGVEP 221 (521)
T ss_pred --------cCCeeeCC--CCChHHHHHHHHHHHHHHHHh--CC-CCCEEEEecCccHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 12334333 346777788888999999998 32 489999999999999999999999999999999999
Q ss_pred ccCCC
Q 019910 329 KLSRG 333 (334)
Q Consensus 329 ~gs~~ 333 (334)
.+++.
T Consensus 222 ~~a~~ 226 (521)
T PRK12483 222 DDSNC 226 (521)
T ss_pred CCCch
Confidence 88764
No 36
>PLN02569 threonine synthase
Probab=99.98 E-value=5.4e-31 Score=267.46 Aligned_cols=210 Identities=10% Similarity=0.082 Sum_probs=170.0
Q ss_pred CCceeecc-cccccccCCCCCCCcccccCCCCcCCCCCccccC-CC-CeEEEEeCCCCCCCChhHHHHHHHhhhHHHHhc
Q 019910 63 DSKIHQIK-LFTTTEKHGGGPLGGISFLNNTCPFLGDDMIMRD-ED-RCFYVVRDDLLHPLVNGNKARKMDALLPLLEDH 139 (334)
Q Consensus 63 ~~~~~~~~-ll~~~~~~~~~~~~~~~~~~~~Tp~l~~~~l~~~-~g-~~lyvKrDDl~~p~~gGnK~RkL~~lL~~a~~~ 139 (334)
...|+|.+ |||. .+....+++.++.||++..+.|++. .| .+||+|.|.+| | +||||||.+..++..+.+.
T Consensus 108 ~g~wry~~~~lP~-----~~~~~~vsl~eG~TPLv~~~~l~~~~~G~~~l~~K~E~~n-P-TGSFKDRga~~~vs~a~~~ 180 (484)
T PLN02569 108 SGVWSKKEWVLPE-----IDDDDIVSLFEGNSNLFWAERLGKEFLGMNDLWVKHCGIS-H-TGSFKDLGMTVLVSQVNRL 180 (484)
T ss_pred CCccccccccCCC-----CCcccceecCCCCCceeEhhhhhHhhcCCccEEEEECCCC-C-CcCHHHHHHHHHHHHHHHh
Confidence 46899999 8897 3334457899999999999998887 77 58999999995 7 6999999999999998887
Q ss_pred CC-----CEEEEeCCccchHHHHHHHHHHHhCCeEEEEeCCC-CCccccchhHHHHHCC-eEEEECCCChHHHHHHHHHH
Q 019910 140 IV-----TDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGE-QPQILTGYNLISTIYG-KVTYVPRTHYAHRIEMLKSY 212 (334)
Q Consensus 140 g~-----~~VVt~Gg~qsNh~~AvAaaaa~~Gl~~~ivv~~~-~p~~~~gn~~~~~~~G-~V~~v~~~~y~~~~~~~~~~ 212 (334)
|. .+||+.+ +|||++|+|++|+++|++|+||||.. .+. .+..+++.|| +|+.|+. .|++..+.++++
T Consensus 181 g~~~~~~~~Vv~AS--SGN~GaAlAayaa~~Gl~~~I~vP~~~~~~---~k~~qi~a~GA~Vi~v~g-~~d~a~~~a~e~ 254 (484)
T PLN02569 181 RKMAKPVVGVGCAS--TGDTSAALSAYCAAAGIPSIVFLPADKISI---AQLVQPIANGALVLSIDT-DFDGCMRLIREV 254 (484)
T ss_pred hhccCCccEEEEeC--CcHHHHHHHHHHHhcCCeEEEEEcCCCCCH---HHHHHHHhcCCEEEEECC-CHHHHHHHHHHH
Confidence 76 5677543 59999999999999999999999986 432 3567889999 9999985 588665544321
Q ss_pred HHHHhccCCCccchhhhhhhhHhhhhhhcccccchhhhhccccccCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhcCCC
Q 019910 213 ANLVAGNNGDVVWCNEIFEASLTAQKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVALLGVFRLLQYLSQDHLLGRK 292 (334)
Q Consensus 213 a~~~~~~~g~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~IpeGgs~p~a~~G~~~la~EI~eq~~~g~~ 292 (334)
+ ... ..|+++ .. ||....|++++++||++|+ +|.
T Consensus 255 ~-----------------------------------------~~~-~~~~~n-~~-Np~~ieG~kT~a~EI~eQl--~~~ 288 (484)
T PLN02569 255 T-----------------------------------------AEL-PIYLAN-SL-NSLRLEGQKTAAIEILQQF--DWE 288 (484)
T ss_pred H-----------------------------------------HHc-CCEecC-CC-CcchhHhHHHHHHHHHHHc--CCC
Confidence 1 111 234443 33 8888999999999999998 665
Q ss_pred CCCEEEEcCCchhHHHHHHHHHHHcC------CCCeEEEEEeccC
Q 019910 293 RAIKFVVDAGTGTTAVGLGLGAICLG------CVPLFNTLLVKLS 331 (334)
Q Consensus 293 ~~D~Vvvp~GtGgt~aGl~~g~k~lg------~~~~VigV~~~gs 331 (334)
.||+||+|+|+||+++|++++|+++. ...||++|++.|+
T Consensus 289 ~pD~VvvPvG~Gg~l~Gi~kgfkel~~~G~i~~~Priv~Vqa~g~ 333 (484)
T PLN02569 289 VPDWVIVPGGNLGNIYAFYKGFKMCKELGLVDRLPRLVCAQAANA 333 (484)
T ss_pred CCCEEEEeCCchHHHHHHHHHHHHHHHcCCCCCCCeEEEEeeCCC
Confidence 69999999999999999999999873 4569999999886
No 37
>PRK11761 cysM cysteine synthase B; Provisional
Probab=99.98 E-value=3.5e-31 Score=253.65 Aligned_cols=191 Identities=14% Similarity=0.099 Sum_probs=152.6
Q ss_pred cCCCCcCCCCCccccCCCCeEEEEeCCCCCCCChhHHHHHHHhhhHHHHhcCC----CEEEEeCCccchHHHHHHHHHHH
Q 019910 89 LNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIV----TDLVTCGGCQSAHATAVAVSCAE 164 (334)
Q Consensus 89 ~~~~Tp~l~~~~l~~~~g~~lyvKrDDl~~p~~gGnK~RkL~~lL~~a~~~g~----~~VVt~Gg~qsNh~~AvAaaaa~ 164 (334)
.-+-||++..+.|++..|.+||+|+|++| | +||||+|.+.+++..+.+.|. ++||+.+ +|||++|+|++|++
T Consensus 9 ~~g~TPl~~~~~l~~~~g~~i~~K~E~~n-p-tGS~K~R~a~~~~~~a~~~g~~~~g~~vv~aS--sGN~g~alA~~a~~ 84 (296)
T PRK11761 9 TIGNTPLVKLQRLPPDRGNTILAKLEGNN-P-AGSVKDRPALSMIVQAEKRGEIKPGDTLIEAT--SGNTGIALAMIAAI 84 (296)
T ss_pred hcCCCceEeccccccCCCCEEEEEEcccC-C-CCCchhHHHHHHHHHHHHcCCCCCCCEEEEeC--CChHHHHHHHHHHH
Confidence 45779999988888878899999999995 7 799999999999999999987 7799754 59999999999999
Q ss_pred hCCeEEEEeCCCCCccccchhHHHHHCC-eEEEECCC-ChHHHHHHHHHHHHHHhccCCCccchhhhhhhhHhhhhhhcc
Q 019910 165 RGLKSHLLLRGEQPQILTGYNLISTIYG-KVTYVPRT-HYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASLTAQKSRAS 242 (334)
Q Consensus 165 ~Gl~~~ivv~~~~p~~~~gn~~~~~~~G-~V~~v~~~-~y~~~~~~~~~~a~~~~~~~g~~~w~~~~~~~~~~~~~~~~~ 242 (334)
+|++|+||||+..|+. +...++.|| +|+.++.. .+++..+.. ++
T Consensus 85 ~G~~~~i~~p~~~~~~---k~~~~~~~GA~v~~~~~~~~~~~~~~~a----~~--------------------------- 130 (296)
T PRK11761 85 KGYRMKLIMPENMSQE---RRAAMRAYGAELILVPKEQGMEGARDLA----LQ--------------------------- 130 (296)
T ss_pred cCCCEEEEECCCCCHH---HHHHHHHcCCEEEEeCCCCChHHHHHHH----HH---------------------------
Confidence 9999999999987653 678999999 99999852 354332222 11
Q ss_pred cccchhhhhccccccCcEEEEcCCCcchhHHH-HHHHHHHHHHHhhhcCCCCCCEEEEcCCchhHHHHHHHHHHHcCCCC
Q 019910 243 CLGQMDAHKGIDNCRKKVLIVNEGAGDAVALL-GVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGLGAICLGCVP 321 (334)
Q Consensus 243 ~~~~~~~~~~l~~~~~~~y~IpeGgs~p~a~~-G~~~la~EI~eq~~~g~~~~D~Vvvp~GtGgt~aGl~~g~k~lg~~~ 321 (334)
+.......| + .+..|+.... ||.+++.||.+|+ ++ .+|+||+|+|||||++|++.+++++++.+
T Consensus 131 ----------l~~~~~~~~-~-~~~~n~~~~~~~~~t~~~Ei~eq~--~~-~~d~iv~~vG~Gg~~~Gi~~~lk~~~~~~ 195 (296)
T PRK11761 131 ----------MQAEGEGKV-L-DQFANPDNPLAHYETTGPEIWRQT--EG-RITHFVSSMGTTGTIMGVSRYLKEQNPAV 195 (296)
T ss_pred ----------HHhccCCEe-c-CCCCChhhHHHHhhchHHHHHHhc--CC-CCCEEEecCCcHHHHHHHHHHHHHhCCCC
Confidence 111222222 3 2334444433 5889999999997 32 47999999999999999999999999999
Q ss_pred eEEEEEeccCC
Q 019910 322 LFNTLLVKLSR 332 (334)
Q Consensus 322 ~VigV~~~gs~ 332 (334)
+|+||++.++.
T Consensus 196 kvigVep~~~~ 206 (296)
T PRK11761 196 QIVGLQPEEGS 206 (296)
T ss_pred EEEEEecCCCC
Confidence 99999998753
No 38
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional
Probab=99.98 E-value=2.1e-31 Score=279.03 Aligned_cols=249 Identities=15% Similarity=0.066 Sum_probs=187.5
Q ss_pred CCCCcCCCCceeeeccChHHHHHHHhhh-hhhccCCCCceeecccccccccCCCCCCCcccccCCCCcCCCCCccccCC-
Q 019910 28 SGQLSNSPQGICNVRMSGEELLSRLLDR-KWALTSPDSKIHQIKLFTTTEKHGGGPLGGISFLNNTCPFLGDDMIMRDE- 105 (334)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~p~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~Tp~l~~~~l~~~~- 105 (334)
-.+++|.|+|-|.||.+.+.+ ..|... +.+...|.++-.+..+|-. +.++++|+..++++++.+. +..
T Consensus 275 ~~~~~g~~gg~~~pe~l~~~~-~~l~~~~~~~~~~~~f~~e~~~~~~~----~iGrpTPL~~~~~Ls~~l~-----~~~G 344 (695)
T PRK13802 275 QGPYWGQFGGRYVPEALITAL-DELERVYTQAKADPEFHKELATLNQR----YVGRPSPLTEAPRFAERVK-----EKTG 344 (695)
T ss_pred CCCCcCCcCCEeCCHHHHHHH-HHHHHHHHHHhcCHHHHHHHHHHHHh----cCCCCCceeEchhhhhhhH-----hhcC
Confidence 357999999999999999885 556654 7888999987666677765 7887777777766654321 223
Q ss_pred -CCeEEEEeCCCCCCCChhHHHHHHHhhhHHHHhcCCCE-EEEeCCccchHHHHHHHHHHHhCCeEEEEeCCCCCccccc
Q 019910 106 -DRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIVTD-LVTCGGCQSAHATAVAVSCAERGLKSHLLLRGEQPQILTG 183 (334)
Q Consensus 106 -g~~lyvKrDDl~~p~~gGnK~RkL~~lL~~a~~~g~~~-VVt~Gg~qsNh~~AvAaaaa~~Gl~~~ivv~~~~p~~~~g 183 (334)
|.+||+||||+| | +||||+|.+...+..|++.|.++ |+++|+ ||||+|+|++|+++|++|+||||...+.....
T Consensus 345 ~g~~IylK~E~lN-p-TGS~KdR~Al~~i~~A~~~G~~~~Ivetss--GNhG~AlA~aaA~~Gl~c~Ivmp~~~~~~~~~ 420 (695)
T PRK13802 345 LDARVFLKREDLN-H-TGAHKINNALGQALLVKRMGKTRVIAETGA--GQHGVATATVCAMLGLKCRIYMGQIDARRQAL 420 (695)
T ss_pred CCceEEEEEccCC-C-cCCcHHHHHHHHHHHHHHcCCCCEEEEECc--HHHHHHHHHHHHHcCCCEEEEEeCCcccccHH
Confidence 378999999996 5 59999999999999999999875 556665 99999999999999999999999865444556
Q ss_pred hhHHHHHCC-eEEEECCCC--hHHH-HHHHHHHHHHHhccCCCccchhhhhhhhHhhhhhhcccccchhhhhccccccCc
Q 019910 184 YNLISTIYG-KVTYVPRTH--YAHR-IEMLKSYANLVAGNNGDVVWCNEIFEASLTAQKSRASCLGQMDAHKGIDNCRKK 259 (334)
Q Consensus 184 n~~~~~~~G-~V~~v~~~~--y~~~-~~~~~~~a~~~~~~~g~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 259 (334)
|+.+|++|| +|+.|+.+. +++. +++++ .| .. +....
T Consensus 421 nv~~mr~lGAeVi~v~~g~~~l~~Ai~ea~~-------------~~------------------------~~---~~~~~ 460 (695)
T PRK13802 421 NVARMRMLGAEVVEVTLGDRILKDAINEALR-------------DW------------------------VT---NVKDT 460 (695)
T ss_pred HHHHHHHcCCEEEEECCCCCcHHHHHHHHHH-------------HH------------------------HH---hcCCc
Confidence 889999999 999998432 3332 12211 11 00 11123
Q ss_pred EEEEcCCC-cchh---HHHHHHHHHHHHHHhhhc--CCCCCCEEEEcCCchhHHHHHHHHHHHcCCCCeEEEEEeccC
Q 019910 260 VLIVNEGA-GDAV---ALLGVFRLLQYLSQDHLL--GRKRAIKFVVDAGTGTTAVGLGLGAICLGCVPLFNTLLVKLS 331 (334)
Q Consensus 260 ~y~IpeGg-s~p~---a~~G~~~la~EI~eq~~~--g~~~~D~Vvvp~GtGgt~aGl~~g~k~lg~~~~VigV~~~gs 331 (334)
.|+++... .+|. ...|+.+++.||.+|+.. |...||+||+|+|||||++|++.+|+. .+.++||||++.|+
T Consensus 461 ~y~i~~~~g~~P~p~~v~agq~tiG~EI~eQ~~~~~g~~~pD~VVa~VGgGg~~~Gi~~~f~~-~~~vkligVE~~g~ 537 (695)
T PRK13802 461 HYLLGTVAGPHPFPAMVRDFQKIIGEEAKQQLQDWYGIDHPDAICACVGGGSNAIGVMNAFLD-DERVNLYGYEAGGN 537 (695)
T ss_pred eEeecccCCCCCcHHHHHHHHHHHHHHHHHHHhcccCCCCCCEEEEcCCchHHHHHHHHHHHh-CCCceEEEEEecCC
Confidence 45554432 2343 347888999999999842 112699999999999999999999965 79999999999885
No 39
>TIGR02991 ectoine_eutB ectoine utilization protein EutB. Members of this protein family are EutB, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. Members of this family resemble threonine dehydratases.
Probab=99.98 E-value=3e-31 Score=256.42 Aligned_cols=187 Identities=13% Similarity=0.080 Sum_probs=152.0
Q ss_pred CCCcCCCCCccccCCCCeEEEEeCCCCCCCChhHHHHHHHhhhHHHH-hcCCCEEEEeCCccchHHHHHHHHHHHhCCeE
Q 019910 91 NTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLE-DHIVTDLVTCGGCQSAHATAVAVSCAERGLKS 169 (334)
Q Consensus 91 ~~Tp~l~~~~l~~~~g~~lyvKrDDl~~p~~gGnK~RkL~~lL~~a~-~~g~~~VVt~Gg~qsNh~~AvAaaaa~~Gl~~ 169 (334)
+.||+++.+.+++..|.+||+|+|++| | +||||+|++.+++..+. +.+.++||+.+ +|||+.|+|++|+++|++|
T Consensus 18 ~~TPl~~~~~l~~~~g~~l~~K~E~~n-p-tGS~K~R~a~~~i~~~~~~~~~~~vv~aS--sGN~g~alA~~a~~~G~~~ 93 (317)
T TIGR02991 18 EETPLVESPSLSELCGVPVHLKLEHRQ-T-TGSFKLRGATNAVLSLSDTQRAAGVVAAS--TGNHGRALAYAAAEEGVRA 93 (317)
T ss_pred CCCCceechhhHHhhCCeEEEEeccCC-C-CCCcHHHHHHHHHHhhhHhccCCeEEEEC--CCHHHHHHHHHHHHhCCCE
Confidence 568888888888878889999999995 7 69999999999988754 55677888654 5999999999999999999
Q ss_pred EEEeCCCCCccccchhHHHHHCC-eEEEECCCChHHHHHHHHHHHHHHhccCCCccchhhhhhhhHhhhhhhcccccchh
Q 019910 170 HLLLRGEQPQILTGYNLISTIYG-KVTYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASLTAQKSRASCLGQMD 248 (334)
Q Consensus 170 ~ivv~~~~p~~~~gn~~~~~~~G-~V~~v~~~~y~~~~~~~~~~a~~~~~~~g~~~w~~~~~~~~~~~~~~~~~~~~~~~ 248 (334)
++|||...|+ .+...++.|| +|+.++. .|++..+.+++++
T Consensus 94 ~v~~p~~~~~---~k~~~~~~~GA~V~~~~~-~~~~~~~~a~~~~----------------------------------- 134 (317)
T TIGR02991 94 TICMSELVPQ---NKVDEIRRLGAEVRIVGR-SQDDAQEEVERLV----------------------------------- 134 (317)
T ss_pred EEEcCCCCCH---HHHHHHHHcCCEEEEeCC-CHHHHHHHHHHHH-----------------------------------
Confidence 9999998765 3677899999 9999985 4765444332111
Q ss_pred hhhccccccCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhcCCCCCCEEEEcCCchhHHHHHHHHHHHcCCCCeEEEEEe
Q 019910 249 AHKGIDNCRKKVLIVNEGAGDAVALLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGLGAICLGCVPLFNTLLV 328 (334)
Q Consensus 249 ~~~~l~~~~~~~y~IpeGgs~p~a~~G~~~la~EI~eq~~~g~~~~D~Vvvp~GtGgt~aGl~~g~k~lg~~~~VigV~~ 328 (334)
... ..|++ .+..||....|+.+++.||.+|+ +.+|+||+|+|||||++|+++++++++|.++||||++
T Consensus 135 ------~~~-g~~~~-~~~~n~~~~~g~~t~a~Ei~~q~----~~~d~vvv~~G~Gg~~~Gi~~~~k~~~p~~~vigvep 202 (317)
T TIGR02991 135 ------ADR-GLTML-PPFDHPDIVAGQGTLGLEVVEQM----PDLATVLVPLSGGGLASGVAMAVKAARPDTRVIGVSM 202 (317)
T ss_pred ------Hhc-CCEee-CCCCChHHHhhHHHHHHHHHHhC----CCCCEEEEEcChhHHHHHHHHHHHHhCCCCEEEEEEE
Confidence 111 22333 33457888899999999999997 2479999999999999999999999999999999999
Q ss_pred ccCC
Q 019910 329 KLSR 332 (334)
Q Consensus 329 ~gs~ 332 (334)
.++.
T Consensus 203 ~~~~ 206 (317)
T TIGR02991 203 ERGA 206 (317)
T ss_pred CCch
Confidence 7653
No 40
>PLN02556 cysteine synthase/L-3-cyanoalanine synthase
Probab=99.98 E-value=7.2e-31 Score=258.68 Aligned_cols=194 Identities=13% Similarity=0.086 Sum_probs=156.4
Q ss_pred cccCCCCcCCCCCccccCCCCeEEEEeCCCCCCCChhHHHHHHHhhhHHHHhcC-----CCEEEEeCCccchHHHHHHHH
Q 019910 87 SFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHI-----VTDLVTCGGCQSAHATAVAVS 161 (334)
Q Consensus 87 ~~~~~~Tp~l~~~~l~~~~g~~lyvKrDDl~~p~~gGnK~RkL~~lL~~a~~~g-----~~~VVt~Gg~qsNh~~AvAaa 161 (334)
..+.+-||++..+.+++..|++||+|+|++| | +||||+|++.++|.++.+.| .++||+.+ +||||+|+|++
T Consensus 54 ~~~ig~TPl~~l~~l~~~~g~~I~~KlE~~n-P-tGS~KdR~A~~~l~~a~~~G~i~pG~~~vV~aS--sGN~G~alA~~ 129 (368)
T PLN02556 54 SQLIGKTPLVYLNKVTEGCGAYIAAKQEMFQ-P-TSSIKDRPALAMIEDAEKKNLITPGKTTLIEPT--SGNMGISLAFM 129 (368)
T ss_pred HHhcCCCccEEccccccccCCEEEEEecccC-C-ccchHHHHHHHHHHHHHHcCCcCCCCCEEEEeC--CchHHHHHHHH
Confidence 4466789999998888777899999999995 7 68999999999999998886 47888743 69999999999
Q ss_pred HHHhCCeEEEEeCCCCCccccchhHHHHHCC-eEEEECCCC-hHHHHHHHHHHHHHHhccCCCccchhhhhhhhHhhhhh
Q 019910 162 CAERGLKSHLLLRGEQPQILTGYNLISTIYG-KVTYVPRTH-YAHRIEMLKSYANLVAGNNGDVVWCNEIFEASLTAQKS 239 (334)
Q Consensus 162 aa~~Gl~~~ivv~~~~p~~~~gn~~~~~~~G-~V~~v~~~~-y~~~~~~~~~~a~~~~~~~g~~~w~~~~~~~~~~~~~~ 239 (334)
|+++|++|++|||...+. .|..+++.|| +|+.++... +....+...
T Consensus 130 a~~~G~~~~ivvp~~~~~---~k~~~lr~~GA~Vi~~~~~~~~~~~~~~a~----------------------------- 177 (368)
T PLN02556 130 AAMKGYKMILTMPSYTSL---ERRVTMRAFGAELVLTDPTKGMGGTVKKAY----------------------------- 177 (368)
T ss_pred HHHcCCCEEEEECCCCCH---HHHHHHHHcCCEEEEECCCCCccHHHHHHH-----------------------------
Confidence 999999999999998754 4678999999 999997421 111111111
Q ss_pred hcccccchhhhhccccccCcEEEEcCCCcchhHH-HHHHHHHHHHHHhhhcCCCCCCEEEEcCCchhHHHHHHHHHHHcC
Q 019910 240 RASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVAL-LGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGLGAICLG 318 (334)
Q Consensus 240 ~~~~~~~~~~~~~l~~~~~~~y~IpeGgs~p~a~-~G~~~la~EI~eq~~~g~~~~D~Vvvp~GtGgt~aGl~~g~k~lg 318 (334)
++....+..|++ .+..||... .||.+++.||.+|. ++ .+|+||+|+|||||++|++.++++++
T Consensus 178 ------------~l~~~~~~~~~~-~q~~np~~~~~g~~ttg~EI~eq~--~~-~~D~vV~~vGtGGt~aGv~~~lk~~~ 241 (368)
T PLN02556 178 ------------ELLESTPDAFML-QQFSNPANTQVHFETTGPEIWEDT--LG-QVDIFVMGIGSGGTVSGVGKYLKSKN 241 (368)
T ss_pred ------------HHHHhcCCCCcc-CCCCCHHHHHHHHHHHHHHHHHhc--CC-CCCEEEEcCCcchHHHHHHHHHHHhC
Confidence 011112233433 567889887 49999999999986 32 59999999999999999999999999
Q ss_pred CCCeEEEEEeccCC
Q 019910 319 CVPLFNTLLVKLSR 332 (334)
Q Consensus 319 ~~~~VigV~~~gs~ 332 (334)
++++|+||++.++.
T Consensus 242 p~~kVigVep~~~~ 255 (368)
T PLN02556 242 PNVKIYGVEPAESN 255 (368)
T ss_pred CCCEEEEEeeCCCc
Confidence 99999999998874
No 41
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form. A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.
Probab=99.98 E-value=1.5e-31 Score=263.54 Aligned_cols=185 Identities=16% Similarity=0.155 Sum_probs=152.4
Q ss_pred CcCCCCCccccCCCCeEEEEeCCCCCCCChhHHHHHHHhhhHHHHhcCC-CEEEEeCCccchHHHHHHHHHHHhCCeEEE
Q 019910 93 CPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIV-TDLVTCGGCQSAHATAVAVSCAERGLKSHL 171 (334)
Q Consensus 93 Tp~l~~~~l~~~~g~~lyvKrDDl~~p~~gGnK~RkL~~lL~~a~~~g~-~~VVt~Gg~qsNh~~AvAaaaa~~Gl~~~i 171 (334)
||++.+++|++..|.+||+|+|++| | +||||+|.+.+.+..+.+.+. ++||++++ |||++|+|++|+++|++|++
T Consensus 1 TPl~~~~~ls~~~g~~i~~K~E~~~-p-tgS~K~R~a~~~i~~~~~~~~~~~vv~aSs--GN~g~alA~~a~~~G~~~~i 76 (380)
T TIGR01127 1 TPLIYSTTLSDITGSEVYLKLENLQ-K-TGSFKIRGALNKIANLSEDQRQRGVVAASA--GNHAQGVAYAAKKFGIKAVI 76 (380)
T ss_pred CCceehHHHHHHhCCeEEEEecCCC-C-CCCcHHHHHHHHHHhcchhccCCEEEEECC--CHHHHHHHHHHHHcCCCEEE
Confidence 7899988899888999999999995 7 699999999999988877774 67887764 99999999999999999999
Q ss_pred EeCCCCCccccchhHHHHHCC-eEEEECCCChHHHHHHHHHHHHHHhccCCCccchhhhhhhhHhhhhhhcccccchhhh
Q 019910 172 LLRGEQPQILTGYNLISTIYG-KVTYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASLTAQKSRASCLGQMDAH 250 (334)
Q Consensus 172 vv~~~~p~~~~gn~~~~~~~G-~V~~v~~~~y~~~~~~~~~~a~~~~~~~g~~~w~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (334)
|||...|.. +...++.|| +|+.++. .|++..+.. ++++.
T Consensus 77 v~p~~~~~~---k~~~~~~~GA~V~~~~~-~~~~a~~~a----~~~~~-------------------------------- 116 (380)
T TIGR01127 77 VMPESAPPS---KVKATKSYGAEVILHGD-DYDEAYAFA----TSLAE-------------------------------- 116 (380)
T ss_pred EEcCCCcHH---HHHHHHHCCCEEEEECC-CHHHHHHHH----HHHHH--------------------------------
Confidence 999988754 677899999 9999985 466543322 21111
Q ss_pred hccccccCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhcCCCCCCEEEEcCCchhHHHHHHHHHHHcCCCCeEEEEEecc
Q 019910 251 KGIDNCRKKVLIVNEGAGDAVALLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGLGAICLGCVPLFNTLLVKL 330 (334)
Q Consensus 251 ~~l~~~~~~~y~IpeGgs~p~a~~G~~~la~EI~eq~~~g~~~~D~Vvvp~GtGgt~aGl~~g~k~lg~~~~VigV~~~g 330 (334)
..+..| ++ +..|+....|+.+++.||++|+ + .+|+||+|+|||||++|++.+++.+.|+++||||++.+
T Consensus 117 -----~~~~~~-~~-~~~~~~~~~g~~t~~~Ei~~q~--~--~~D~vv~~vG~Gg~~aGi~~~~k~~~p~~kvigVe~~~ 185 (380)
T TIGR01127 117 -----EEGRVF-VH-PFDDEFVMAGQGTIGLEIMEDI--P--DVDTVIVPVGGGGLISGVASAAKQINPNVKVIGVEAEG 185 (380)
T ss_pred -----hcCCEe-cC-CCCChhhhhhhHHHHHHHHHhC--C--CCCEEEEEeChHHHHHHHHHHHHHhCCCCEEEEEEECC
Confidence 122233 32 3446777788899999999997 2 59999999999999999999999999999999999988
Q ss_pred CC
Q 019910 331 SR 332 (334)
Q Consensus 331 s~ 332 (334)
++
T Consensus 186 ~~ 187 (380)
T TIGR01127 186 AP 187 (380)
T ss_pred Ch
Confidence 75
No 42
>cd01562 Thr-dehyd Threonine dehydratase: The first step in amino acid degradation is the removal of nitrogen. Although the nitrogen atoms of most amino acids are transferred to alpha-ketoglutarate before removal, the alpha-amino group of threonine can be directly converted into NH4+. The direct deamination is catalyzed by threonine dehydratase, in which pyridoxal phosphate (PLP) is the prosthetic group. Threonine dehydratase is widely distributed in all three major phylogenetic divisions.
Probab=99.98 E-value=1.7e-31 Score=254.58 Aligned_cols=188 Identities=14% Similarity=0.104 Sum_probs=154.2
Q ss_pred CCCCcCCCCCccccCCCCeEEEEeCCCCCCCChhHHHHHHHhhhHHHHhcC-CCEEEEeCCccchHHHHHHHHHHHhCCe
Q 019910 90 NNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHI-VTDLVTCGGCQSAHATAVAVSCAERGLK 168 (334)
Q Consensus 90 ~~~Tp~l~~~~l~~~~g~~lyvKrDDl~~p~~gGnK~RkL~~lL~~a~~~g-~~~VVt~Gg~qsNh~~AvAaaaa~~Gl~ 168 (334)
-+-||+++.++|++..|.+||+|+|+++ | +|+||+|.+.+++..+++.+ .++||+++ +|||+.|+|++|+++|++
T Consensus 15 ig~TPl~~~~~l~~~~g~~i~~K~E~~n-p-tgS~Kdr~a~~~l~~~~~~~~~~~iv~~s--sGN~g~alA~~a~~~G~~ 90 (304)
T cd01562 15 VRRTPLLTSPTLSELLGAEVYLKCENLQ-K-TGSFKIRGAYNKLLSLSEEERAKGVVAAS--AGNHAQGVAYAAKLLGIP 90 (304)
T ss_pred CCCCCcccchhhHHHhCCeEEEEeccCC-C-cCCcHHHhHHHHHHhcCHhhcCCcEEEEC--CCHHHHHHHHHHHHcCCC
Confidence 3568999988888888899999999995 6 58899999999999887766 67899875 499999999999999999
Q ss_pred EEEEeCCCCCccccchhHHHHHCC-eEEEECCCChHHHHHHHHHHHHHHhccCCCccchhhhhhhhHhhhhhhcccccch
Q 019910 169 SHLLLRGEQPQILTGYNLISTIYG-KVTYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASLTAQKSRASCLGQM 247 (334)
Q Consensus 169 ~~ivv~~~~p~~~~gn~~~~~~~G-~V~~v~~~~y~~~~~~~~~~a~~~~~~~g~~~w~~~~~~~~~~~~~~~~~~~~~~ 247 (334)
|++|+|.+.+.. +..+++.|| +|+.++.. |+++.+.++++
T Consensus 91 ~~ivvp~~~~~~---k~~~l~~~Ga~vi~~~~~-~~~~~~~a~~l----------------------------------- 131 (304)
T cd01562 91 ATIVMPETAPAA---KVDATRAYGAEVVLYGED-FDEAEAKAREL----------------------------------- 131 (304)
T ss_pred EEEEECCCCCHH---HHHHHHHcCCEEEEeCCC-HHHHHHHHHHH-----------------------------------
Confidence 999999987653 567899999 99999864 76554433221
Q ss_pred hhhhccccccCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhcCCCCCCEEEEcCCchhHHHHHHHHHHHcCCCCeEEEEE
Q 019910 248 DAHKGIDNCRKKVLIVNEGAGDAVALLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGLGAICLGCVPLFNTLL 327 (334)
Q Consensus 248 ~~~~~l~~~~~~~y~IpeGgs~p~a~~G~~~la~EI~eq~~~g~~~~D~Vvvp~GtGgt~aGl~~g~k~lg~~~~VigV~ 327 (334)
.+..+.+|+. +..|+....|+.+++.||.+|+ + .||+||+|+|||||++|++.+++.+++.++||||+
T Consensus 132 ------a~~~~~~~~~--~~~n~~~~~g~~~~~~Ei~~q~--~--~~d~vv~~vGtGgt~~Gi~~~lk~~~~~~kvigv~ 199 (304)
T cd01562 132 ------AEEEGLTFIH--PFDDPDVIAGQGTIGLEILEQV--P--DLDAVFVPVGGGGLIAGIATAVKALSPNTKVIGVE 199 (304)
T ss_pred ------HHhcCCEEeC--CCCCcchhccHHHHHHHHHHhc--C--CCCEEEEecCHHHHHHHHHHHHHHhCCCCEEEEEE
Confidence 1122233433 3446677788899999999998 3 39999999999999999999999999999999999
Q ss_pred eccCC
Q 019910 328 VKLSR 332 (334)
Q Consensus 328 ~~gs~ 332 (334)
+.+++
T Consensus 200 ~~~~~ 204 (304)
T cd01562 200 PEGAP 204 (304)
T ss_pred ECCCc
Confidence 98875
No 43
>PRK08198 threonine dehydratase; Provisional
Probab=99.98 E-value=1.8e-31 Score=265.09 Aligned_cols=187 Identities=15% Similarity=0.132 Sum_probs=152.6
Q ss_pred CCCcCCCCCccccCCCCeEEEEeCCCCCCCChhHHHHHHHhhhHHHH-hcCCCEEEEeCCccchHHHHHHHHHHHhCCeE
Q 019910 91 NTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLE-DHIVTDLVTCGGCQSAHATAVAVSCAERGLKS 169 (334)
Q Consensus 91 ~~Tp~l~~~~l~~~~g~~lyvKrDDl~~p~~gGnK~RkL~~lL~~a~-~~g~~~VVt~Gg~qsNh~~AvAaaaa~~Gl~~ 169 (334)
+-||++..++|++..|.+||+|+|++| | +||||+|.+.+.+..+. +.+.++||++++ ||||+++|++|+++|++|
T Consensus 21 ~~TPl~~~~~ls~~~g~~i~~K~E~~n-p-tGS~K~R~a~~~i~~~~~~~~~~~vv~aSs--GN~g~alA~~a~~~G~~~ 96 (404)
T PRK08198 21 RRTPLEYSRTLSELTGAEVYLKCENLQ-R-TGSFKIRGAYNKIASLSEEERARGVVAASA--GNHAQGVAYAASLLGIKA 96 (404)
T ss_pred CCCCceehhhHHHHhCCEEEEEECCCC-C-CCCCHHHHHHHHHHhccHhhcCCEEEEECC--CHHHHHHHHHHHHcCCCE
Confidence 448888888888888899999999995 7 69999999999888765 566789998764 999999999999999999
Q ss_pred EEEeCCCCCccccchhHHHHHCC-eEEEECCCChHHHHHHHHHHHHHHhccCCCccchhhhhhhhHhhhhhhcccccchh
Q 019910 170 HLLLRGEQPQILTGYNLISTIYG-KVTYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASLTAQKSRASCLGQMD 248 (334)
Q Consensus 170 ~ivv~~~~p~~~~gn~~~~~~~G-~V~~v~~~~y~~~~~~~~~~a~~~~~~~g~~~w~~~~~~~~~~~~~~~~~~~~~~~ 248 (334)
+||||...|.. +..+++.|| +|+.++. .|++..+...+ +
T Consensus 97 ~iv~p~~~~~~---k~~~~~~~GA~Vi~~~~-~~~~~~~~a~~----~-------------------------------- 136 (404)
T PRK08198 97 TIVMPETAPLS---KVKATRSYGAEVVLHGD-VYDEALAKAQE----L-------------------------------- 136 (404)
T ss_pred EEEECCCCCHH---HHHHHHhCCCEEEEECC-CHHHHHHHHHH----H--------------------------------
Confidence 99999988754 567899999 9999974 47654332221 1
Q ss_pred hhhccccccCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhcCCCCCCEEEEcCCchhHHHHHHHHHHHcCCCCeEEEEEe
Q 019910 249 AHKGIDNCRKKVLIVNEGAGDAVALLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGLGAICLGCVPLFNTLLV 328 (334)
Q Consensus 249 ~~~~l~~~~~~~y~IpeGgs~p~a~~G~~~la~EI~eq~~~g~~~~D~Vvvp~GtGgt~aGl~~g~k~lg~~~~VigV~~ 328 (334)
....+.+| + .+..||....|+.+++.||.+|+ + .+|+||+|+|||||++|++.++|.++|+++||||++
T Consensus 137 -----~~~~g~~~-~-~~~~~~~~~~g~~t~a~EI~~q~--~--~~d~vv~~vG~GG~~~Gi~~~~k~~~p~~kiigVe~ 205 (404)
T PRK08198 137 -----AEETGATF-V-HPFDDPDVIAGQGTIGLEILEDL--P--DVDTVVVPIGGGGLISGVATAVKALRPEVRVIGVQA 205 (404)
T ss_pred -----HHhcCCEe-c-CCCCCccHHHHHHHHHHHHHHhC--C--CCCEEEEEeCHhHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 11122233 3 33456777888999999999997 2 589999999999999999999999999999999999
Q ss_pred ccCC
Q 019910 329 KLSR 332 (334)
Q Consensus 329 ~gs~ 332 (334)
.++.
T Consensus 206 ~~~~ 209 (404)
T PRK08198 206 EGAP 209 (404)
T ss_pred CCCh
Confidence 8875
No 44
>PRK06382 threonine dehydratase; Provisional
Probab=99.98 E-value=1.8e-31 Score=265.75 Aligned_cols=187 Identities=16% Similarity=0.159 Sum_probs=151.2
Q ss_pred CCCcCCCCCccccCCCCeEEEEeCCCCCCCChhHHHHHHHhhhHHHHhcC-CCEEEEeCCccchHHHHHHHHHHHhCCeE
Q 019910 91 NTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHI-VTDLVTCGGCQSAHATAVAVSCAERGLKS 169 (334)
Q Consensus 91 ~~Tp~l~~~~l~~~~g~~lyvKrDDl~~p~~gGnK~RkL~~lL~~a~~~g-~~~VVt~Gg~qsNh~~AvAaaaa~~Gl~~ 169 (334)
+-||++..+.|++..|.+||+|+|++| | +||||+|++.+.+..+.+.+ .++||++++ ||||+|+|++|+++|++|
T Consensus 24 ~~TPl~~~~~ls~~~g~~v~~K~E~~n-p-tGSfK~Rga~~~i~~~~~~~~~~gvv~aSs--GN~g~a~A~aa~~~G~~~ 99 (406)
T PRK06382 24 NRTPLIHSTTFGDEYGGDIYFKLENFQ-K-TGSFKSRGAVFKFSKLSEDELRNGVITASA--GNHAQGVAYAASINGIDA 99 (406)
T ss_pred CCCCeeEhhhhHHHhCCEEEEEecCCC-C-CCCCHHHHHHHHHHhcchhccCCeEEEECC--CHHHHHHHHHHHHcCCCE
Confidence 447788777788888899999999995 7 69999999998887765444 467887764 999999999999999999
Q ss_pred EEEeCCCCCccccchhHHHHHCC-eEEEECCCChHHHHHHHHHHHHHHhccCCCccchhhhhhhhHhhhhhhcccccchh
Q 019910 170 HLLLRGEQPQILTGYNLISTIYG-KVTYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASLTAQKSRASCLGQMD 248 (334)
Q Consensus 170 ~ivv~~~~p~~~~gn~~~~~~~G-~V~~v~~~~y~~~~~~~~~~a~~~~~~~g~~~w~~~~~~~~~~~~~~~~~~~~~~~ 248 (334)
+||||...|.. +...++.|| +|+.++. .|++..+..+++
T Consensus 100 ~ivmp~~~~~~---k~~~~~~~GA~Vv~~~~-~~~~a~~~a~~l------------------------------------ 139 (406)
T PRK06382 100 KIVMPEYTIPQ---KVNAVEAYGAHVILTGR-DYDEAHRYADKI------------------------------------ 139 (406)
T ss_pred EEEEcCCCHHH---HHHHHHHcCCEEEEECC-CHHHHHHHHHHH------------------------------------
Confidence 99999988764 456789999 9999985 477654433221
Q ss_pred hhhccccccCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhcCCCCCCEEEEcCCchhHHHHHHHHHHHcCCCCeEEEEEe
Q 019910 249 AHKGIDNCRKKVLIVNEGAGDAVALLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGLGAICLGCVPLFNTLLV 328 (334)
Q Consensus 249 ~~~~l~~~~~~~y~IpeGgs~p~a~~G~~~la~EI~eq~~~g~~~~D~Vvvp~GtGgt~aGl~~g~k~lg~~~~VigV~~ 328 (334)
....+.+|+.| ..||....|+.+++.||.+|+ + .+|+||+|+|||||++|++.+++.++|.++|+||++
T Consensus 140 -----a~~~~~~~v~~--~~~~~~i~g~~t~~~Ei~eq~--~--~~d~vvvpvG~GG~~~Gv~~~~k~~~p~~~vigVe~ 208 (406)
T PRK06382 140 -----AMDENRTFIEA--FNDRWVISGQGTIGLEIMEDL--P--DLDQIIVPVGGGGLISGIALAAKHINPNVKIIGIES 208 (406)
T ss_pred -----HHhcCCEecCc--cCChHHHHHHHHHHHHHHHhc--C--CCCEEEEeeChHHHHHHHHHHHHHhCCCCEEEEEEE
Confidence 11122334332 346777888899999999997 3 589999999999999999999999999999999999
Q ss_pred ccCC
Q 019910 329 KLSR 332 (334)
Q Consensus 329 ~gs~ 332 (334)
.++.
T Consensus 209 ~~~~ 212 (406)
T PRK06382 209 ELSD 212 (406)
T ss_pred CCCh
Confidence 9875
No 45
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=99.98 E-value=3.1e-31 Score=266.13 Aligned_cols=193 Identities=11% Similarity=0.008 Sum_probs=154.9
Q ss_pred CCCcCCCCCccccCCCCeEEEEeCCCCCCCChhHHHHHHHhhhHHHHhcCC----CEEEEeCCccchHHHHHHHHHHHhC
Q 019910 91 NTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIV----TDLVTCGGCQSAHATAVAVSCAERG 166 (334)
Q Consensus 91 ~~Tp~l~~~~l~~~~g~~lyvKrDDl~~p~~gGnK~RkL~~lL~~a~~~g~----~~VVt~Gg~qsNh~~AvAaaaa~~G 166 (334)
+-||++..+++++..|.+||+|+|++| | +||||+|++.+++..+.+.|. ++||+++ +||||+|+|++|+++|
T Consensus 10 ~~TPl~~~~~l~~~~~~~i~~K~E~~n-p-tGS~K~R~a~~~l~~a~~~g~~~~g~~vv~~s--sGN~g~alA~~a~~~G 85 (454)
T TIGR01137 10 GNTPLVRLNKVSKGIKCELLAKCEFFN-P-GGSVKDRIALRMIEDAEASGRLKPGDTIIEPT--SGNTGIGLALVAAIKG 85 (454)
T ss_pred CCCceEEccccCCCCCceEEEEEhhcC-C-CcchHHHHHHHHHHHHHHcCCCCCCCEEEEeC--CcHHHHHHHHHHHHcC
Confidence 668999888888877889999999995 7 699999999999999999888 7899874 5999999999999999
Q ss_pred CeEEEEeCCCCCccccchhHHHHHCC-eEEEECCC-ChHHHHHHHHHHHHHHhccCCCccchhhhhhhhHhhhhhhcccc
Q 019910 167 LKSHLLLRGEQPQILTGYNLISTIYG-KVTYVPRT-HYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASLTAQKSRASCL 244 (334)
Q Consensus 167 l~~~ivv~~~~p~~~~gn~~~~~~~G-~V~~v~~~-~y~~~~~~~~~~a~~~~~~~g~~~w~~~~~~~~~~~~~~~~~~~ 244 (334)
++|++|||...|+. |..+++.|| +|+.++.. .+++.+...+ .++
T Consensus 86 ~~~~iv~p~~~~~~---k~~~~~~~GA~v~~~~~~~~~~~~~~~~~-~a~------------------------------ 131 (454)
T TIGR01137 86 YKCIIVLPEKMSNE---KVDVLKALGAEIVRTPTAAAFDSPESHIG-VAK------------------------------ 131 (454)
T ss_pred CeEEEEeCCCcCHH---HHHHHHHCCCEEEEcCCccCCCchHHHHH-HHH------------------------------
Confidence 99999999987654 678999999 99999742 2332222111 111
Q ss_pred cchhhhhccccccCcEEEEcCCCcchhHH-HHHHHHHHHHHHhhhcCCCCCCEEEEcCCchhHHHHHHHHHHHcCCCCeE
Q 019910 245 GQMDAHKGIDNCRKKVLIVNEGAGDAVAL-LGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGLGAICLGCVPLF 323 (334)
Q Consensus 245 ~~~~~~~~l~~~~~~~y~IpeGgs~p~a~-~G~~~la~EI~eq~~~g~~~~D~Vvvp~GtGgt~aGl~~g~k~lg~~~~V 323 (334)
++..+.++ ++++.+..|+... .||.+++.||.+|+ ++ .||+||+|+|||||++|++.+++.+.|.++|
T Consensus 132 -------~l~~~~~~-~~~~~~~~~~~~~~~~~~t~~~Ei~~q~--~~-~~d~vv~~vG~Gg~~~G~~~~~~~~~~~~~v 200 (454)
T TIGR01137 132 -------RLVREIPG-AHILDQYNNPSNPLAHYDGTGPEILEQC--EG-KLDMFVAGAGTGGTITGIARYLKESNPKCRI 200 (454)
T ss_pred -------HHHHhCCC-cEecccCCChhhHHHHHHhhHHHHHHHh--CC-CCCEEEEecCchHHHHHHHHHHHhhCCCCEE
Confidence 12222223 3345666565543 47999999999998 32 5999999999999999999999999999999
Q ss_pred EEEEeccCC
Q 019910 324 NTLLVKLSR 332 (334)
Q Consensus 324 igV~~~gs~ 332 (334)
+||++.||.
T Consensus 201 i~ve~~~~~ 209 (454)
T TIGR01137 201 VGADPEGSI 209 (454)
T ss_pred EEEecCCCc
Confidence 999999875
No 46
>PRK06450 threonine synthase; Validated
Probab=99.98 E-value=6.1e-31 Score=256.56 Aligned_cols=191 Identities=16% Similarity=0.096 Sum_probs=157.4
Q ss_pred cccccccccCCCCCCCcccccCCCCcCCCCCccccCCCCeEEEEeCCCCCCCChhHHHHHHHhhhHHHHhcCCCEEEEeC
Q 019910 69 IKLFTTTEKHGGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIVTDLVTCG 148 (334)
Q Consensus 69 ~~ll~~~~~~~~~~~~~~~~~~~~Tp~l~~~~l~~~~g~~lyvKrDDl~~p~~gGnK~RkL~~lL~~a~~~g~~~VVt~G 148 (334)
.++||. .. ..+++.++.||++.. .+||+|.|.+| | +||||+|....++..|.++|.++||+.+
T Consensus 42 ~~~lp~-----~~--~~vslgeG~TPLv~~--------~~l~~K~E~~n-P-TGSfKDRga~~~i~~a~~~g~~~vv~aS 104 (338)
T PRK06450 42 RKNFPY-----IK--HFISLGEGRTPLIKK--------GNIWFKLDFLN-P-TGSYKDRGSVTLISYLAEKGIKQISEDS 104 (338)
T ss_pred HhhCCC-----Cc--CCCCCCCCCCCceec--------CCEEEEecCCC-C-cCCCHHHHHHHHHHHHHHcCCCEEEEEC
Confidence 588886 22 257899999999975 26999999995 7 6999999999999999999999999765
Q ss_pred CccchHHHHHHHHHHHhCCeEEEEeCCCCCccccchhHHHHHCC-eEEEECCCChHHHHHHHHHHHHHHhccCCCccchh
Q 019910 149 GCQSAHATAVAVSCAERGLKSHLLLRGEQPQILTGYNLISTIYG-KVTYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCN 227 (334)
Q Consensus 149 g~qsNh~~AvAaaaa~~Gl~~~ivv~~~~p~~~~gn~~~~~~~G-~V~~v~~~~y~~~~~~~~~~a~~~~~~~g~~~w~~ 227 (334)
+|||+.|+|++|+++|++|+||||...|.. +..+++.|| +|+.++. +|++..++ + +
T Consensus 105 --sGN~g~slA~~aa~~G~~~~i~vP~~~~~~---k~~~i~~~GA~vi~v~~-~~~~~~~~----a----~--------- 161 (338)
T PRK06450 105 --SGNAGASIAAYGAAAGIEVKIFVPETASGG---KLKQIESYGAEVVRVRG-SREDVAKA----A----E--------- 161 (338)
T ss_pred --CcHHHHHHHHHHHHcCCCEEEEEcCCCCHH---HHHHHHHcCCEEEEECC-CHHHHHHH----H----H---------
Confidence 499999999999999999999999988654 667899999 9999985 47643222 1 0
Q ss_pred hhhhhhHhhhhhhcccccchhhhhccccccCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhcCCCCCCEEEEcCCchhHH
Q 019910 228 EIFEASLTAQKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVALLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTA 307 (334)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~IpeGgs~p~a~~G~~~la~EI~eq~~~g~~~~D~Vvvp~GtGgt~ 307 (334)
.. ..|++ ....||....|++++++||.+|+ +|..||+||+|+|+|+++
T Consensus 162 ----------------------------~~-g~~~~-~~~~np~~ieG~kTia~EI~eql--~~~~pD~vvvpvG~Ggll 209 (338)
T PRK06450 162 ----------------------------NS-GYYYA-SHVLQPQFRDGIRTLAYEIAKDL--DWKIPNYVFIPVSAGTLL 209 (338)
T ss_pred ----------------------------hc-CeEec-cCCCCccHHHHHHHHHHHHHHHc--CCCCCCEEEEECCchHHH
Confidence 01 22333 33458889999999999999998 555699999999999999
Q ss_pred HHHHHHHHHcCC------CCeEEEEEeccC
Q 019910 308 VGLGLGAICLGC------VPLFNTLLVKLS 331 (334)
Q Consensus 308 aGl~~g~k~lg~------~~~VigV~~~gs 331 (334)
+|+++||+++.+ ..|||+|++.|+
T Consensus 210 ~Gi~~g~~el~~~G~i~~~prii~Vq~~g~ 239 (338)
T PRK06450 210 LGVYSGFKHLLDSGVISEMPKIVAVQTEQV 239 (338)
T ss_pred HHHHHHHHHHHhcCCccCCCeEEEEeeCCC
Confidence 999999999864 379999999875
No 47
>TIGR00260 thrC threonine synthase. Involved in threonine biosynthesis it catalyses the reaction O-PHOSPHO-L-HOMOSERINE + H(2)O = L-THREONINE + ORTHOPHOSPHATE using pyridoxal phosphate as a cofactor. the enzyme is distantly related to the serine/threonine dehydratases which are also pyridoxal-phosphate dependent enzymes. the pyridoxal-phosphate binding site is a Lys (K) residues present at residue 70 of the model.
Probab=99.98 E-value=9.4e-32 Score=259.73 Aligned_cols=208 Identities=13% Similarity=0.080 Sum_probs=166.1
Q ss_pred ceeecccccccccCCCCCCCcccccCCCCcCCCCCccccCCCC-eEEEEeCCCCCCCChhHHHHHHHhhhHHHHhcCCCE
Q 019910 65 KIHQIKLFTTTEKHGGGPLGGISFLNNTCPFLGDDMIMRDEDR-CFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIVTD 143 (334)
Q Consensus 65 ~~~~~~ll~~~~~~~~~~~~~~~~~~~~Tp~l~~~~l~~~~g~-~lyvKrDDl~~p~~gGnK~RkL~~lL~~a~~~g~~~ 143 (334)
.|||.++||. +.....+++..+-||++..+.+.+..|. +||+|+|+++ | +||||+|++.+++..+.+.|..+
T Consensus 1 ~~~~~~~lp~-----~~~~~~~~l~~g~TPl~~~~~l~~~~g~~~i~~K~E~~n-p-tGSfKdR~a~~~l~~a~~~g~~~ 73 (328)
T TIGR00260 1 VWRYREFLPV-----TPEKDLVDLGEGVTPLFRSPALVANVGIKNLYVLELFHN-P-TLSFKDRGMAVALTKALELGNDT 73 (328)
T ss_pred CccchhhcCC-----CChhhhhhhccCCccCccchHHHHhcCCccEEehhhccC-C-chhhHhhhHHHHHHHHHHcCCCE
Confidence 4899999997 2212236778899999999888887886 9999999995 7 79999999999999999999999
Q ss_pred EEEeCCccchHHHHHHHHHHHhCCeEEEEeCCC-CCccccchhHHHHHCC-eEEEECCCChHHHHHHHHHHHHHHhccCC
Q 019910 144 LVTCGGCQSAHATAVAVSCAERGLKSHLLLRGE-QPQILTGYNLISTIYG-KVTYVPRTHYAHRIEMLKSYANLVAGNNG 221 (334)
Q Consensus 144 VVt~Gg~qsNh~~AvAaaaa~~Gl~~~ivv~~~-~p~~~~gn~~~~~~~G-~V~~v~~~~y~~~~~~~~~~a~~~~~~~g 221 (334)
||+.+ +||||+|+|++|+.+|++|++|||.. .++ .+...++.|| +|+.++. .|++..+.+++.+ .+
T Consensus 74 vv~aS--sGN~g~a~A~~a~~~g~~~~v~~p~~~~s~---~k~~~~~~~GA~Vi~~~~-~~~~~~~~~~~~~----~~-- 141 (328)
T TIGR00260 74 VLCAS--TGNTGAAAAAYAGKAGVKVVILYPAGKISL---GKLAQALGYNAEVVAIDG-NFDDAQRLVKQLF----GD-- 141 (328)
T ss_pred EEEeC--CcHHHHHHHHHhccCCCcEEEEECCCCCCH---HHHHHHHhcCcEEEEecC-CHHHHHHHHHHHH----hh--
Confidence 99754 69999999999999999999999997 553 4778899999 9999985 5776554433211 11
Q ss_pred CccchhhhhhhhHhhhhhhcccccchhhhhccccccCcEEEEcCCCcc--hhHHHHHHHHHHHHHHhhhcCCCCCCEEEE
Q 019910 222 DVVWCNEIFEASLTAQKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGD--AVALLGVFRLLQYLSQDHLLGRKRAIKFVV 299 (334)
Q Consensus 222 ~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~IpeGgs~--p~a~~G~~~la~EI~eq~~~g~~~~D~Vvv 299 (334)
. ..| +.+..| |...+|+.+++.||.+|+ ++..+|+||+
T Consensus 142 -----------------------------------~-~~~--~~~~~n~~~~~~~g~~t~~~Ei~~q~--~~~~~d~iv~ 181 (328)
T TIGR00260 142 -----------------------------------K-EAL--GLNSVNSIPYRLEGQKTYAFEAVEQL--GWEAPDKVVV 181 (328)
T ss_pred -----------------------------------c-Cee--ecccCCCCCeEeeeehhHHHHHHHHh--CCCCCCEEEE
Confidence 1 112 122333 666788999999999998 3335899999
Q ss_pred cCCchhHHHHHHHHHHHc---C---CCCeEEEEEeccCC
Q 019910 300 DAGTGTTAVGLGLGAICL---G---CVPLFNTLLVKLSR 332 (334)
Q Consensus 300 p~GtGgt~aGl~~g~k~l---g---~~~~VigV~~~gs~ 332 (334)
|+||||+++|++.+++.+ | .+ +|++|++.++.
T Consensus 182 ~vG~GG~~~G~~~~~~~~~~~g~~~~p-~v~~Ve~~~~~ 219 (328)
T TIGR00260 182 PVPNSGNFGAILKGFKEKKEGGLDSLP-VKRGIQAEGAA 219 (328)
T ss_pred ECCCcchHHHHHHHHHHHHhcCCccCC-ceeEEEcCCCC
Confidence 999999999999999985 2 33 99999998873
No 48
>PLN02970 serine racemase
Probab=99.97 E-value=3.5e-31 Score=256.88 Aligned_cols=187 Identities=16% Similarity=0.132 Sum_probs=151.7
Q ss_pred CCCcCCCCCccccCCCCeEEEEeCCCCCCCChhHHHHHHHhhhHHHH-hcCCCEEEEeCCccchHHHHHHHHHHHhCCeE
Q 019910 91 NTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLE-DHIVTDLVTCGGCQSAHATAVAVSCAERGLKS 169 (334)
Q Consensus 91 ~~Tp~l~~~~l~~~~g~~lyvKrDDl~~p~~gGnK~RkL~~lL~~a~-~~g~~~VVt~Gg~qsNh~~AvAaaaa~~Gl~~ 169 (334)
+-||++..+.+++..|.+||+|+|++| | +||||+|.+.+++..+. +.+.++||+++ +|||+.|+|++|+.+|++|
T Consensus 26 ~~TPL~~~~~l~~~~g~~i~~K~E~~n-p-tGSfKdRga~~~i~~~~~~~~~~~vv~aS--sGN~g~alA~~a~~~G~~~ 101 (328)
T PLN02970 26 HRTPVLTSSSLDALAGRSLFFKCECFQ-K-GGAFKFRGACNAIFSLSDDQAEKGVVTHS--SGNHAAALALAAKLRGIPA 101 (328)
T ss_pred CCCCeeechhhHHhhCCeEEEEecCCC-C-CCCcHHHHHHHHHHHhhHhhcCCeEEEEC--CcHHHHHHHHHHHHcCCCE
Confidence 558888888888877889999999995 7 59999999999988765 55678899765 5999999999999999999
Q ss_pred EEEeCCCCCccccchhHHHHHCC-eEEEECCCChHHHHHHHHHHHHHHhccCCCccchhhhhhhhHhhhhhhcccccchh
Q 019910 170 HLLLRGEQPQILTGYNLISTIYG-KVTYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASLTAQKSRASCLGQMD 248 (334)
Q Consensus 170 ~ivv~~~~p~~~~gn~~~~~~~G-~V~~v~~~~y~~~~~~~~~~a~~~~~~~g~~~w~~~~~~~~~~~~~~~~~~~~~~~ 248 (334)
+||||...++. +...++.|| +|+.++. .++.+.+.+++ +
T Consensus 102 ~ivvp~~~~~~---k~~~~~~~GA~Vi~~~~-~~~~~~~~a~~----l-------------------------------- 141 (328)
T PLN02970 102 YIVVPKNAPAC---KVDAVIRYGGIITWCEP-TVESREAVAAR----V-------------------------------- 141 (328)
T ss_pred EEEECCCCCHH---HHHHHHhcCCEEEEeCC-CHHHHHHHHHH----H--------------------------------
Confidence 99999988765 446789999 9999985 46654333221 1
Q ss_pred hhhccccccCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhcCCCCCCEEEEcCCchhHHHHHHHHHHHcCCCCeEEEEEe
Q 019910 249 AHKGIDNCRKKVLIVNEGAGDAVALLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGLGAICLGCVPLFNTLLV 328 (334)
Q Consensus 249 ~~~~l~~~~~~~y~IpeGgs~p~a~~G~~~la~EI~eq~~~g~~~~D~Vvvp~GtGgt~aGl~~g~k~lg~~~~VigV~~ 328 (334)
.... +.|++ .+..|+....|+.+++.||.+|+. .||+||+|+|||||++|++.+++.+++.++||||++
T Consensus 142 -----a~~~-g~~~~-~~~~n~~~~~g~~t~g~Ei~~ql~----~~D~vv~~vG~GG~~~Gi~~~lk~~~~~~kvi~Vep 210 (328)
T PLN02970 142 -----QQET-GAVLI-HPYNDGRVISGQGTIALEFLEQVP----ELDVIIVPISGGGLISGIALAAKAIKPSIKIIAAEP 210 (328)
T ss_pred -----HHhc-CCEEe-CCCCCcchhhehHHHHHHHHHhcc----CCCEEEEeeCchHHHHHHHHHHHhcCCCCEEEEEEE
Confidence 1112 22333 234466677889999999999982 489999999999999999999999999999999999
Q ss_pred ccCC
Q 019910 329 KLSR 332 (334)
Q Consensus 329 ~gs~ 332 (334)
.++.
T Consensus 211 ~~~~ 214 (328)
T PLN02970 211 KGAD 214 (328)
T ss_pred CCCc
Confidence 9875
No 49
>PRK07048 serine/threonine dehydratase; Validated
Probab=99.97 E-value=2.8e-31 Score=256.39 Aligned_cols=187 Identities=18% Similarity=0.155 Sum_probs=151.5
Q ss_pred CCCcCCCCCccccCCCCeEEEEeCCCCCCCChhHHHHHHHhhhHHHH-hcCCCEEEEeCCccchHHHHHHHHHHHhCCeE
Q 019910 91 NTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLE-DHIVTDLVTCGGCQSAHATAVAVSCAERGLKS 169 (334)
Q Consensus 91 ~~Tp~l~~~~l~~~~g~~lyvKrDDl~~p~~gGnK~RkL~~lL~~a~-~~g~~~VVt~Gg~qsNh~~AvAaaaa~~Gl~~ 169 (334)
+-||+++.+.+++..|.+||+|+|++| | +|++|+|...+++..+. +.+.++||++++ |||++|+|++|+.+|++|
T Consensus 23 ~~TPl~~~~~l~~~~g~~i~~K~E~~n-p-tGS~K~R~a~~~i~~~~~~~~~~~vv~aSs--GN~g~alA~~a~~~G~~~ 98 (321)
T PRK07048 23 HRTPVLTSRTADARTGAQVFFKCENFQ-R-MGAFKFRGAYNALSQFSPEQRRAGVVTFSS--GNHAQAIALSARLLGIPA 98 (321)
T ss_pred CCCCCccchhhHHhcCCeEEEEeccCC-C-CCCeeHHHHHHHHHhhhHhhcCCcEEEeCC--CHHHHHHHHHHHHcCCCE
Confidence 448888888888778899999999996 6 68999999999888765 456788998764 999999999999999999
Q ss_pred EEEeCCCCCccccchhHHHHHCC-eEEEECCCChHHHHHHHHHHHHHHhccCCCccchhhhhhhhHhhhhhhcccccchh
Q 019910 170 HLLLRGEQPQILTGYNLISTIYG-KVTYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASLTAQKSRASCLGQMD 248 (334)
Q Consensus 170 ~ivv~~~~p~~~~gn~~~~~~~G-~V~~v~~~~y~~~~~~~~~~a~~~~~~~g~~~w~~~~~~~~~~~~~~~~~~~~~~~ 248 (334)
++|||...|+. |...++.|| +|+.++. .+++..+..++
T Consensus 99 ~vvvp~~~~~~---k~~~~~~~GAeV~~~~~-~~~~~~~~a~~------------------------------------- 137 (321)
T PRK07048 99 TIVMPQDAPAA---KVAATRGYGGEVVTYDR-YTEDREEIGRR------------------------------------- 137 (321)
T ss_pred EEEECCCCCHH---HHHHHHHCCCEEEEECC-CHHHHHHHHHH-------------------------------------
Confidence 99999988653 678999999 9999985 35544333221
Q ss_pred hhhccccccCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhcCCCCCCEEEEcCCchhHHHHHHHHHHHcCCCCeEEEEEe
Q 019910 249 AHKGIDNCRKKVLIVNEGAGDAVALLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGLGAICLGCVPLFNTLLV 328 (334)
Q Consensus 249 ~~~~l~~~~~~~y~IpeGgs~p~a~~G~~~la~EI~eq~~~g~~~~D~Vvvp~GtGgt~aGl~~g~k~lg~~~~VigV~~ 328 (334)
+..+.+..|+.| ..|+....|+.+++.||.+|+ + .||+||+|+|||||++|++.+++.+++.++|+||++
T Consensus 138 ----l~~~~g~~~~~~--~~~~~~~~g~~t~~~EI~~q~--~--~~D~vv~~vGtGG~~~Gi~~~~k~~~~~~~vigvep 207 (321)
T PRK07048 138 ----LAEERGLTLIPP--YDHPHVIAGQGTAAKELFEEV--G--PLDALFVCLGGGGLLSGCALAARALSPGCKVYGVEP 207 (321)
T ss_pred ----HHHhcCCEEECC--CCCcchhhccchHHHHHHhhc--C--CCCEEEEecChhHHHHHHHHHHHHhCCCCEEEEEee
Confidence 111222344333 335566778889999999997 3 599999999999999999999999999999999999
Q ss_pred ccCC
Q 019910 329 KLSR 332 (334)
Q Consensus 329 ~gs~ 332 (334)
.+++
T Consensus 208 ~~~~ 211 (321)
T PRK07048 208 EAGN 211 (321)
T ss_pred CCCh
Confidence 8874
No 50
>TIGR01124 ilvA_2Cterm threonine ammonia-lyase, biosynthetic, long form. Forms scoring between the trusted and noise cutoff tend to branch with this subgroup of threonine ammonia-lyase phylogenetically but have only a single copy of the C-terminal domain.
Probab=99.97 E-value=3e-31 Score=270.47 Aligned_cols=189 Identities=17% Similarity=0.136 Sum_probs=155.0
Q ss_pred CCCCcCCCCCccccCCCCeEEEEeCCCCCCCChhHHHHHHHhhhHHH-HhcCCCEEEEeCCccchHHHHHHHHHHHhCCe
Q 019910 90 NNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLL-EDHIVTDLVTCGGCQSAHATAVAVSCAERGLK 168 (334)
Q Consensus 90 ~~~Tp~l~~~~l~~~~g~~lyvKrDDl~~p~~gGnK~RkL~~lL~~a-~~~g~~~VVt~Gg~qsNh~~AvAaaaa~~Gl~ 168 (334)
-.-||+...++|++..|.+||+||||+| | +||||+|.+.+.+..+ .+++.++||+++ +||||+++|++|+++|++
T Consensus 15 i~~TPL~~~~~Ls~~~g~~i~lK~E~lq-p-tgSfK~RgA~n~i~~l~~~~~~~gVV~aS--aGNha~~vA~aa~~~Gi~ 90 (499)
T TIGR01124 15 AQETPLQKAAKLSERLGNRILIKREDLQ-P-VFSFKLRGAYNKMAQLSPEQKARGVIAAS--AGNHAQGVAFSAARLGLK 90 (499)
T ss_pred cCCCCeeehHHHHHHhCCEEEEEecCCC-C-CCCCHHHHHHHHHHHhhHHhcCCEEEEEC--CCHHHHHHHHHHHHcCCC
Confidence 3458888888888888999999999995 7 6889999998888764 566788999875 599999999999999999
Q ss_pred EEEEeCCCCCccccchhHHHHHCC-eEEEECCCChHHHHHHHHHHHHHHhccCCCccchhhhhhhhHhhhhhhcccccch
Q 019910 169 SHLLLRGEQPQILTGYNLISTIYG-KVTYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASLTAQKSRASCLGQM 247 (334)
Q Consensus 169 ~~ivv~~~~p~~~~gn~~~~~~~G-~V~~v~~~~y~~~~~~~~~~a~~~~~~~g~~~w~~~~~~~~~~~~~~~~~~~~~~ 247 (334)
|+||||...|.. ++..++.|| +|+.++. .|++..+.+ .+
T Consensus 91 ~~IvmP~~tp~~---Kv~~~r~~GA~Vvl~g~-~~d~a~~~a----~~-------------------------------- 130 (499)
T TIGR01124 91 ALIVMPETTPDI---KVDAVRGFGGEVVLHGA-NFDDAKAKA----IE-------------------------------- 130 (499)
T ss_pred EEEEECCCCCHH---HHHHHHhCCCEEEEeCc-CHHHHHHHH----HH--------------------------------
Confidence 999999988764 567899999 9999975 476543322 21
Q ss_pred hhhhccccccCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhcCCCCCCEEEEcCCchhHHHHHHHHHHHcCCCCeEEEEE
Q 019910 248 DAHKGIDNCRKKVLIVNEGAGDAVALLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGLGAICLGCVPLFNTLL 327 (334)
Q Consensus 248 ~~~~~l~~~~~~~y~IpeGgs~p~a~~G~~~la~EI~eq~~~g~~~~D~Vvvp~GtGgt~aGl~~g~k~lg~~~~VigV~ 327 (334)
+....+..|+.|. .||....|+.+++.||++|+ ++ .+|+||||+|||||++|++.++|.++|+++||||+
T Consensus 131 -----la~~~g~~~i~p~--~~~~~i~G~gtig~EI~~q~--~~-~~D~vvvpvGgGGliaGia~~lk~~~p~~kVIgVe 200 (499)
T TIGR01124 131 -----LSQEKGLTFIHPF--DDPLVIAGQGTLALEILRQV--AN-PLDAVFVPVGGGGLAAGVAALIKQLMPEIKVIGVE 200 (499)
T ss_pred -----HHHhcCCEeeCCC--CChHHHHhhHHHHHHHHHhC--CC-CCCEEEEccCccHHHHHHHHHHHHhCCCCEEEEEE
Confidence 1122334554443 46778888889999999997 32 58999999999999999999999999999999999
Q ss_pred eccCC
Q 019910 328 VKLSR 332 (334)
Q Consensus 328 ~~gs~ 332 (334)
+.+++
T Consensus 201 p~~~~ 205 (499)
T TIGR01124 201 PTDSD 205 (499)
T ss_pred ECCCh
Confidence 98875
No 51
>PLN02550 threonine dehydratase
Probab=99.97 E-value=4.4e-31 Score=272.38 Aligned_cols=188 Identities=15% Similarity=0.110 Sum_probs=154.2
Q ss_pred CCCcCCCCCccccCCCCeEEEEeCCCCCCCChhHHHHHHHhhhHHH-HhcCCCEEEEeCCccchHHHHHHHHHHHhCCeE
Q 019910 91 NTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLL-EDHIVTDLVTCGGCQSAHATAVAVSCAERGLKS 169 (334)
Q Consensus 91 ~~Tp~l~~~~l~~~~g~~lyvKrDDl~~p~~gGnK~RkL~~lL~~a-~~~g~~~VVt~Gg~qsNh~~AvAaaaa~~Gl~~ 169 (334)
.-||+..+++|++..|.+||+|+||+| | +||||+|.+.+.+..+ .++..++||+++ +||||+++|++|+++|++|
T Consensus 108 ~~TPL~~s~~LS~~~g~~IylK~E~lq-p-tGSFK~RGA~n~I~~L~~e~~~~GVV~aS--aGNhAqgvA~aA~~lGika 183 (591)
T PLN02550 108 IESPLQLAKKLSERLGVKVLLKREDLQ-P-VFSFKLRGAYNMMAKLPKEQLDKGVICSS--AGNHAQGVALSAQRLGCDA 183 (591)
T ss_pred cCChhhhhHHhhHhhCCEEEEEEcCCC-C-CCcHHHHHHHHHHHHHHHhcCCCCEEEEC--CCHHHHHHHHHHHHcCCCE
Confidence 459999999999999999999999996 6 6899999999888775 566778899764 5999999999999999999
Q ss_pred EEEeCCCCCccccchhHHHHHCC-eEEEECCCChHHHHHHHHHHHHHHhccCCCccchhhhhhhhHhhhhhhcccccchh
Q 019910 170 HLLLRGEQPQILTGYNLISTIYG-KVTYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASLTAQKSRASCLGQMD 248 (334)
Q Consensus 170 ~ivv~~~~p~~~~gn~~~~~~~G-~V~~v~~~~y~~~~~~~~~~a~~~~~~~g~~~w~~~~~~~~~~~~~~~~~~~~~~~ 248 (334)
+||||...|.. ++..++.|| +|+.++. .|++..+.+.+ +
T Consensus 184 ~IvmP~~tp~~---Kv~~~r~~GAeVvl~g~-~~dea~~~A~~----l-------------------------------- 223 (591)
T PLN02550 184 VIAMPVTTPEI---KWQSVERLGATVVLVGD-SYDEAQAYAKQ----R-------------------------------- 223 (591)
T ss_pred EEEECCCCCHH---HHHHHHHcCCEEEEeCC-CHHHHHHHHHH----H--------------------------------
Confidence 99999988764 567889999 9999985 47754333221 1
Q ss_pred hhhccccccCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhcCCCCCCEEEEcCCchhHHHHHHHHHHHcCCCCeEEEEEe
Q 019910 249 AHKGIDNCRKKVLIVNEGAGDAVALLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGLGAICLGCVPLFNTLLV 328 (334)
Q Consensus 249 ~~~~l~~~~~~~y~IpeGgs~p~a~~G~~~la~EI~eq~~~g~~~~D~Vvvp~GtGgt~aGl~~g~k~lg~~~~VigV~~ 328 (334)
....+..|+.|. .||..+.|+.+++.||++|+. . .+|+||||+|||||++|++.++|.++|+++||||++
T Consensus 224 -----a~e~g~~fi~pf--ddp~viaGqgTig~EI~eQl~--~-~~D~VvvpVGgGGLiaGia~~lK~l~p~vkVIGVEp 293 (591)
T PLN02550 224 -----ALEEGRTFIPPF--DHPDVIAGQGTVGMEIVRQHQ--G-PLHAIFVPVGGGGLIAGIAAYVKRVRPEVKIIGVEP 293 (591)
T ss_pred -----HHhcCCEEECCC--CChHHHHHHHHHHHHHHHHcC--C-CCCEEEEEeChhHHHHHHHHHHHHhCCCCEEEEEEE
Confidence 111223555443 367777788889999999982 1 489999999999999999999999999999999999
Q ss_pred ccCC
Q 019910 329 KLSR 332 (334)
Q Consensus 329 ~gs~ 332 (334)
.+++
T Consensus 294 ~~a~ 297 (591)
T PLN02550 294 SDAN 297 (591)
T ss_pred CCCh
Confidence 8864
No 52
>PRK09224 threonine dehydratase; Reviewed
Probab=99.97 E-value=6.4e-31 Score=268.49 Aligned_cols=188 Identities=18% Similarity=0.152 Sum_probs=152.5
Q ss_pred CCCcCCCCCccccCCCCeEEEEeCCCCCCCChhHHHHHHHhhhHHHH-hcCCCEEEEeCCccchHHHHHHHHHHHhCCeE
Q 019910 91 NTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLE-DHIVTDLVTCGGCQSAHATAVAVSCAERGLKS 169 (334)
Q Consensus 91 ~~Tp~l~~~~l~~~~g~~lyvKrDDl~~p~~gGnK~RkL~~lL~~a~-~~g~~~VVt~Gg~qsNh~~AvAaaaa~~Gl~~ 169 (334)
.-||+...++|++..|.+||+||||+ +| +||||+|.+.+.+..+. +++.++||++| +|||++|+|++|+++|++|
T Consensus 19 ~~TPL~~~~~Ls~~~g~~i~lK~E~l-qp-tgSfK~RgA~n~i~~l~~~~~~~gvV~aS--aGNha~avA~aa~~lGi~~ 94 (504)
T PRK09224 19 QETPLEKAPKLSARLGNQVLLKREDL-QP-VFSFKLRGAYNKMAQLTEEQLARGVITAS--AGNHAQGVALSAARLGIKA 94 (504)
T ss_pred CCCCceehhHhHHHhCCEEEEEecCC-CC-CCCChHHHHHHHHHhhhHHhcCCEEEEEC--cCHHHHHHHHHHHHcCCCE
Confidence 45888888888888899999999999 47 68899999988887653 56778999876 4999999999999999999
Q ss_pred EEEeCCCCCccccchhHHHHHCC-eEEEECCCChHHHHHHHHHHHHHHhccCCCccchhhhhhhhHhhhhhhcccccchh
Q 019910 170 HLLLRGEQPQILTGYNLISTIYG-KVTYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASLTAQKSRASCLGQMD 248 (334)
Q Consensus 170 ~ivv~~~~p~~~~gn~~~~~~~G-~V~~v~~~~y~~~~~~~~~~a~~~~~~~g~~~w~~~~~~~~~~~~~~~~~~~~~~~ 248 (334)
+||||...|.. ++..++.|| +|+.++. +|++..+.+. ++
T Consensus 95 ~IvmP~~tp~~---K~~~~r~~GA~Vi~~g~-~~~~a~~~a~----~l-------------------------------- 134 (504)
T PRK09224 95 VIVMPVTTPDI---KVDAVRAFGGEVVLHGD-SFDEAYAHAI----EL-------------------------------- 134 (504)
T ss_pred EEEECCCCCHH---HHHHHHhCCCEEEEECC-CHHHHHHHHH----HH--------------------------------
Confidence 99999988764 567889999 9999985 5775443322 11
Q ss_pred hhhccccccCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhcCCCCCCEEEEcCCchhHHHHHHHHHHHcCCCCeEEEEEe
Q 019910 249 AHKGIDNCRKKVLIVNEGAGDAVALLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGLGAICLGCVPLFNTLLV 328 (334)
Q Consensus 249 ~~~~l~~~~~~~y~IpeGgs~p~a~~G~~~la~EI~eq~~~g~~~~D~Vvvp~GtGgt~aGl~~g~k~lg~~~~VigV~~ 328 (334)
....+..|+.| ..||....|+.+++.||.+|+ + ..+|+||||+|||||++|++.++|.++|+++||||++
T Consensus 135 -----~~~~g~~~v~~--f~~~~~i~G~gTi~~EI~~q~--~-~~~D~vvvpvGgGGliaGia~~lk~~~p~~kVigVe~ 204 (504)
T PRK09224 135 -----AEEEGLTFIHP--FDDPDVIAGQGTIAMEILQQH--P-HPLDAVFVPVGGGGLIAGVAAYIKQLRPEIKVIGVEP 204 (504)
T ss_pred -----HHhcCCEEeCC--CCCcHHHHhHHHHHHHHHHhc--c-CCCCEEEEecChhHHHHHHHHHHHHhCCCCEEEEEEE
Confidence 11222344433 346777788889999999997 3 2489999999999999999999999999999999999
Q ss_pred ccCC
Q 019910 329 KLSR 332 (334)
Q Consensus 329 ~gs~ 332 (334)
.++.
T Consensus 205 ~~~~ 208 (504)
T PRK09224 205 EDSA 208 (504)
T ss_pred CCCh
Confidence 8764
No 53
>PRK06608 threonine dehydratase; Provisional
Probab=99.97 E-value=1.3e-30 Score=254.24 Aligned_cols=186 Identities=16% Similarity=0.127 Sum_probs=153.8
Q ss_pred CCCcCCCCCccccCCCCeEEEEeCCCCCCCChhHHHHHHHhhhHHHHhcCC--CEEEEeCCccchHHHHHHHHHHHhCCe
Q 019910 91 NTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIV--TDLVTCGGCQSAHATAVAVSCAERGLK 168 (334)
Q Consensus 91 ~~Tp~l~~~~l~~~~g~~lyvKrDDl~~p~~gGnK~RkL~~lL~~a~~~g~--~~VVt~Gg~qsNh~~AvAaaaa~~Gl~ 168 (334)
+-||++..+.|++..|.+||+|+|++| | +||||+|++.+++..+.+.|. ++||+++ +|||++|+|++|+++|++
T Consensus 22 ~~TPl~~~~~l~~~~g~~l~~K~E~~n-p-tGS~K~R~a~~~v~~a~~~g~~~~~vv~~S--sGN~g~alA~~a~~~G~~ 97 (338)
T PRK06608 22 HLTPIVHSESLNEMLGHEIFFKVESLQ-K-TGAFKVRGVLNHLLELKEQGKLPDKIVAYS--TGNHGQAVAYASKLFGIK 97 (338)
T ss_pred cCCCccchHhHHHHhCCEEEEEeCCCC-C-CCCcHHHHHHHHHHHhhhhcCcCCeEEEEC--CCHHHHHHHHHHHHcCCC
Confidence 458888888888888999999999995 7 689999999999999999887 7899764 699999999999999999
Q ss_pred EEEEeCCCCCccccchhHHHHHCC-eEEEECCCChHHHHHHHHHHHHHHhccCCCccchhhhhhhhHhhhhhhcccccch
Q 019910 169 SHLLLRGEQPQILTGYNLISTIYG-KVTYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASLTAQKSRASCLGQM 247 (334)
Q Consensus 169 ~~ivv~~~~p~~~~gn~~~~~~~G-~V~~v~~~~y~~~~~~~~~~a~~~~~~~g~~~w~~~~~~~~~~~~~~~~~~~~~~ 247 (334)
|++|||...++. +...++.|| +|+.++. +++..+.++
T Consensus 98 ~~vv~p~~~~~~---k~~~l~~~GA~V~~~~~--~~~~~~~a~------------------------------------- 135 (338)
T PRK06608 98 TRIYLPLNTSKV---KQQAALYYGGEVILTNT--RQEAEEKAK------------------------------------- 135 (338)
T ss_pred EEEEECCCCCHH---HHHHHHhCCCEEEEECC--HHHHHHHHH-------------------------------------
Confidence 999999987654 667899999 9999963 332212111
Q ss_pred hhhhccccccCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhcCCCCCCEEEEcCCchhHHHHHHHHHHHcCCCCeEEEEE
Q 019910 248 DAHKGIDNCRKKVLIVNEGAGDAVALLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGLGAICLGCVPLFNTLL 327 (334)
Q Consensus 248 ~~~~~l~~~~~~~y~IpeGgs~p~a~~G~~~la~EI~eq~~~g~~~~D~Vvvp~GtGgt~aGl~~g~k~lg~~~~VigV~ 327 (334)
+ . ..+..|++++. .|+....|+.+++.||.+|+ ++ .||+||+|+|||||++|++.+++.+++.++|+||+
T Consensus 136 ----~-~-~~~~~~~~~~~-~~~~~~~g~~t~a~Ei~~q~--~~-~~D~vv~~vG~GGt~~Gi~~~~k~~~~~~~vigVe 205 (338)
T PRK06608 136 ----E-D-EEQGFYYIHPS-DSDSTIAGAGTLCYEALQQL--GF-SPDAIFASCGGGGLISGTYLAKELISPTSLLIGSE 205 (338)
T ss_pred ----H-H-HhCCCEEcCCC-CCHHHhccHHHHHHHHHHhc--CC-CcCEEEEeechhHHHHHHHHHHHhcCCCCEEEEEe
Confidence 0 0 11245666554 46777788989999999997 43 59999999999999999999999999999999999
Q ss_pred eccCC
Q 019910 328 VKLSR 332 (334)
Q Consensus 328 ~~gs~ 332 (334)
+.+++
T Consensus 206 p~~~~ 210 (338)
T PRK06608 206 PLNAN 210 (338)
T ss_pred eCCCh
Confidence 98874
No 54
>TIGR02079 THD1 threonine dehydratase. This model represents threonine dehydratase, the first step in the pathway converting threonine into isoleucine. At least two other clades of biosynthetic threonine dehydratases have been characterized by models TIGR01124 and TIGR01127. Those sequences described by this model are exclusively found in species containg the rest of the isoleucine pathway and which are generally lacking in members of the those other two clades of threonine dehydratases. Members of this clade are also often gene clustered with other elements of the isoleucine pathway.
Probab=99.97 E-value=1.2e-30 Score=260.19 Aligned_cols=190 Identities=15% Similarity=0.169 Sum_probs=150.7
Q ss_pred cCCCCcCCCCCccccCCCCeEEEEeCCCCCCCChhHHHHHHHhhhHHH-HhcCCCEEEEeCCccchHHHHHHHHHHHhCC
Q 019910 89 LNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLL-EDHIVTDLVTCGGCQSAHATAVAVSCAERGL 167 (334)
Q Consensus 89 ~~~~Tp~l~~~~l~~~~g~~lyvKrDDl~~p~~gGnK~RkL~~lL~~a-~~~g~~~VVt~Gg~qsNh~~AvAaaaa~~Gl 167 (334)
.-+-||++.++.|++..|.+||+|+|++| | +||||+|++.+.+..+ .+...++||+++ +||||+++|++|+++|+
T Consensus 13 ~i~~TPl~~~~~ls~~~g~~iy~K~E~~~-p-tGSfK~RgA~~~i~~l~~~~~~~gvv~aS--sGN~g~a~A~~a~~~G~ 88 (409)
T TIGR02079 13 VVPHTPLQLNERLSEKYGANIYLKREDLQ-P-VRSYKIRGAYNFLKQLSDAQLAKGVVCAS--AGNHAQGFAYACRHLGV 88 (409)
T ss_pred cCCCCCccccHHHHHHhCCEEEEEecCCC-C-CCCcHHHHHHHHHHhCCHHhhCCEEEEEC--ccHHHHHHHHHHHHcCC
Confidence 34568999998888888999999999995 7 6899999999888764 455567899876 59999999999999999
Q ss_pred eEEEEeCCCCCccccchhHHHHHCC-eEE---EECCCChHHHHHHHHHHHHHHhccCCCccchhhhhhhhHhhhhhhccc
Q 019910 168 KSHLLLRGEQPQILTGYNLISTIYG-KVT---YVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASLTAQKSRASC 243 (334)
Q Consensus 168 ~~~ivv~~~~p~~~~gn~~~~~~~G-~V~---~v~~~~y~~~~~~~~~~a~~~~~~~g~~~w~~~~~~~~~~~~~~~~~~ 243 (334)
+|+||||...|.. +...++.|| +|+ .++ +.|++..+.+.+ +
T Consensus 89 ~~~iv~p~~~~~~---k~~~~~~~GA~vv~v~~~g-~~~~~a~~~a~~----~--------------------------- 133 (409)
T TIGR02079 89 HGTVFMPATTPKQ---KIDRVKIFGGEFIEIILVG-DTFDQCAAAARE----H--------------------------- 133 (409)
T ss_pred CEEEEECCCCCHH---HHHHHHHcCCCeeEEEEeC-CCHHHHHHHHHH----H---------------------------
Confidence 9999999988764 567899999 853 333 346654332221 1
Q ss_pred ccchhhhhccccccCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhcCCCCCCEEEEcCCchhHHHHHHHHHHHcCCCCeE
Q 019910 244 LGQMDAHKGIDNCRKKVLIVNEGAGDAVALLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGLGAICLGCVPLF 323 (334)
Q Consensus 244 ~~~~~~~~~l~~~~~~~y~IpeGgs~p~a~~G~~~la~EI~eq~~~g~~~~D~Vvvp~GtGgt~aGl~~g~k~lg~~~~V 323 (334)
....+. +++++ ..||....|+.++++||.+|+. ..||+||+|+|||||++|++.+++.++|+++|
T Consensus 134 ----------~~~~g~-~~~~~-~~~~~~~~g~~ti~~Ei~~q~~---~~~D~vv~pvG~GG~~~Gia~~~k~~~p~~~v 198 (409)
T TIGR02079 134 ----------VEDHGG-TFIPP-FDDPRIIEGQGTVAAEILDQLP---EKPDYVVVPVGGGGLISGLTTYLAGTSPKTKI 198 (409)
T ss_pred ----------HHhcCC-EEeCC-CCCHhHhhhhHHHHHHHHHhcC---CCCCEEEEEecHhHHHHHHHHHHHHhCCCCEE
Confidence 111122 33433 3577788888899999999983 24999999999999999999999999999999
Q ss_pred EEEEeccCC
Q 019910 324 NTLLVKLSR 332 (334)
Q Consensus 324 igV~~~gs~ 332 (334)
|||++.+++
T Consensus 199 igVep~~~~ 207 (409)
T TIGR02079 199 IGVEPEGAP 207 (409)
T ss_pred EEEEeCCCC
Confidence 999999875
No 55
>PRK08638 threonine dehydratase; Validated
Probab=99.97 E-value=1.3e-30 Score=253.64 Aligned_cols=187 Identities=15% Similarity=0.191 Sum_probs=151.0
Q ss_pred CCCcCCCCCccccCCCCeEEEEeCCCCCCCChhHHHHHHHhhhHHHHh-cCCCEEEEeCCccchHHHHHHHHHHHhCCeE
Q 019910 91 NTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLED-HIVTDLVTCGGCQSAHATAVAVSCAERGLKS 169 (334)
Q Consensus 91 ~~Tp~l~~~~l~~~~g~~lyvKrDDl~~p~~gGnK~RkL~~lL~~a~~-~g~~~VVt~Gg~qsNh~~AvAaaaa~~Gl~~ 169 (334)
+.||+++.+.|++..|.+||+|+|++| | +|++|+|...+++..+.+ .+.++||+.++ |||+.|+|++|+.+|++|
T Consensus 26 ~~TPlv~~~~l~~~~g~~i~~K~E~~n-p-tGS~KdR~a~~~i~~~~~~~~~~~vv~~Ss--GN~g~alA~~aa~~G~~~ 101 (333)
T PRK08638 26 RKTPLPRSNYLSERCKGEIFLKLENMQ-R-TGSFKIRGAFNKLSSLTDAEKRKGVVACSA--GNHAQGVALSCALLGIDG 101 (333)
T ss_pred cCCCceechhhHHhhCCeEEEEeccCC-c-cCCcHHHHHHHHHHhccHHhcCCeEEEeCC--cHHHHHHHHHHHHcCCCE
Confidence 457888777777777889999999995 7 699999999999877544 56788887764 999999999999999999
Q ss_pred EEEeCCCCCccccchhHHHHHCC-eEEEECCCChHHHHHHHHHHHHHHhccCCCccchhhhhhhhHhhhhhhcccccchh
Q 019910 170 HLLLRGEQPQILTGYNLISTIYG-KVTYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASLTAQKSRASCLGQMD 248 (334)
Q Consensus 170 ~ivv~~~~p~~~~gn~~~~~~~G-~V~~v~~~~y~~~~~~~~~~a~~~~~~~g~~~w~~~~~~~~~~~~~~~~~~~~~~~ 248 (334)
+||||...++. +..+++.|| +|+.++. .|++..+.+++++ .
T Consensus 102 ~iv~p~~~~~~---k~~~~~~~GA~V~~~~~-~~~~~~~~a~~~a----~------------------------------ 143 (333)
T PRK08638 102 KVVMPKGAPKS---KVAATCGYGAEVVLHGD-NFNDTIAKVEEIV----E------------------------------ 143 (333)
T ss_pred EEEeCCCCcHH---HHHHHHHcCCEEEEECc-CHHHHHHHHHHHH----H------------------------------
Confidence 99999988654 667899999 9999974 4665433322111 1
Q ss_pred hhhccccccCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhcCCCCCCEEEEcCCchhHHHHHHHHHHHcCCCCeEEEEEe
Q 019910 249 AHKGIDNCRKKVLIVNEGAGDAVALLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGLGAICLGCVPLFNTLLV 328 (334)
Q Consensus 249 ~~~~l~~~~~~~y~IpeGgs~p~a~~G~~~la~EI~eq~~~g~~~~D~Vvvp~GtGgt~aGl~~g~k~lg~~~~VigV~~ 328 (334)
..+. |++ .+..||....|+.+++.||.+|+ + .+|+||+|+|||||++|++.+++.++++++||||++
T Consensus 144 -------~~g~-~~~-~~~~~~~~~~g~~t~a~Ei~~q~--~--~~d~vv~~vG~Gg~~~Gv~~~lk~~~~~~~vigVep 210 (333)
T PRK08638 144 -------EEGR-TFI-PPYDDPKVIAGQGTIGLEILEDL--W--DVDTVIVPIGGGGLIAGIAVALKSINPTIHIIGVQS 210 (333)
T ss_pred -------hcCC-EEc-CcCCCcchhccccHHHHHHHhhc--C--CCCEEEEEeChhHHHHHHHHHHHHhCCCCEEEEEEE
Confidence 1122 333 23457778889999999999997 2 489999999999999999999999999999999999
Q ss_pred ccCC
Q 019910 329 KLSR 332 (334)
Q Consensus 329 ~gs~ 332 (334)
.++.
T Consensus 211 ~g~~ 214 (333)
T PRK08638 211 ENVH 214 (333)
T ss_pred CCCc
Confidence 8864
No 56
>PRK06815 hypothetical protein; Provisional
Probab=99.97 E-value=2.1e-30 Score=250.15 Aligned_cols=188 Identities=14% Similarity=0.074 Sum_probs=150.0
Q ss_pred CCCcCCCCCccccCCCCeEEEEeCCCCCCCChhHHHHHHHhhhHHHH-hcCCCEEEEeCCccchHHHHHHHHHHHhCCeE
Q 019910 91 NTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLE-DHIVTDLVTCGGCQSAHATAVAVSCAERGLKS 169 (334)
Q Consensus 91 ~~Tp~l~~~~l~~~~g~~lyvKrDDl~~p~~gGnK~RkL~~lL~~a~-~~g~~~VVt~Gg~qsNh~~AvAaaaa~~Gl~~ 169 (334)
+-||++..+.+++..|.+||+|+|++| | +|+||+|...+.+..+. +.+.++||+.+ +|||++|+|++|+++|++|
T Consensus 19 ~~TPLv~~~~l~~~~g~~i~~K~E~~n-p-tgS~KdR~a~~~~~~l~~~~~~~~vv~aS--sGN~g~alA~~a~~~G~~~ 94 (317)
T PRK06815 19 RVTPLEHSPLLSQHTGCEVYLKCEHLQ-H-TGSFKFRGASNKLRLLNEAQRQQGVITAS--SGNHGQGVALAAKLAGIPV 94 (317)
T ss_pred CCCCccccHhHHHhhCCeEEEEecCCC-C-CCCcHHHHHHHHHHhcchhhcCceEEEEC--CChHHHHHHHHHHHhCCCE
Confidence 458888888888878899999999995 7 69999999988877542 33456788754 6999999999999999999
Q ss_pred EEEeCCCCCccccchhHHHHHCC-eEEEECCCChHHHHHHHHHHHHHHhccCCCccchhhhhhhhHhhhhhhcccccchh
Q 019910 170 HLLLRGEQPQILTGYNLISTIYG-KVTYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASLTAQKSRASCLGQMD 248 (334)
Q Consensus 170 ~ivv~~~~p~~~~gn~~~~~~~G-~V~~v~~~~y~~~~~~~~~~a~~~~~~~g~~~w~~~~~~~~~~~~~~~~~~~~~~~ 248 (334)
++|||...++ .+...++.|| +|+.++. .|++......+
T Consensus 95 ~i~~p~~~~~---~k~~~~~~~GA~V~~~~~-~~~~~~~~a~~------------------------------------- 133 (317)
T PRK06815 95 TVYAPEQASA---IKLDAIRALGAEVRLYGG-DALNAELAARR------------------------------------- 133 (317)
T ss_pred EEEECCCCCH---HHHHHHHHCCCEEEEECC-CHHHHHHHHHH-------------------------------------
Confidence 9999998764 4678999999 9999986 46544332221
Q ss_pred hhhccccccCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhcCCCCCCEEEEcCCchhHHHHHHHHHHHcCCCCeEEEEEe
Q 019910 249 AHKGIDNCRKKVLIVNEGAGDAVALLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGLGAICLGCVPLFNTLLV 328 (334)
Q Consensus 249 ~~~~l~~~~~~~y~IpeGgs~p~a~~G~~~la~EI~eq~~~g~~~~D~Vvvp~GtGgt~aGl~~g~k~lg~~~~VigV~~ 328 (334)
+....+.+|+.|. .+|....|+.+++.||.+|+ + .+|+||+|+|||||++|++.+++.++++++|+||++
T Consensus 134 ----~~~~~~~~~~~~~--~~~~~~~g~~t~a~Ei~~q~--~--~~d~vv~~vG~Gg~~~Gi~~~~k~~~~~~~vigVep 203 (317)
T PRK06815 134 ----AAEQQGKVYISPY--NDPQVIAGQGTIGMELVEQQ--P--DLDAVFVAVGGGGLISGIATYLKTLSPKTEIIGCWP 203 (317)
T ss_pred ----HHHhcCCEEecCC--CChhhhcchhHHHHHHHHhc--C--CCCEEEEECcHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 1112233454443 36666778899999999998 3 489999999999999999999999999999999999
Q ss_pred ccCCC
Q 019910 329 KLSRG 333 (334)
Q Consensus 329 ~gs~~ 333 (334)
.+++.
T Consensus 204 ~~~~~ 208 (317)
T PRK06815 204 ANSPS 208 (317)
T ss_pred CCCCc
Confidence 98763
No 57
>PLN02565 cysteine synthase
Probab=99.97 E-value=7.8e-30 Score=247.22 Aligned_cols=195 Identities=13% Similarity=0.047 Sum_probs=151.8
Q ss_pred cccCCCCcCCCCCccccCCCCeEEEEeCCCCCCCChhHHHHHHHhhhHHHHhcCC-----CEEEEeCCccchHHHHHHHH
Q 019910 87 SFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIV-----TDLVTCGGCQSAHATAVAVS 161 (334)
Q Consensus 87 ~~~~~~Tp~l~~~~l~~~~g~~lyvKrDDl~~p~~gGnK~RkL~~lL~~a~~~g~-----~~VVt~Gg~qsNh~~AvAaa 161 (334)
.-..+-||++..+.++...+.+||+|.|.+| | +||||+|.+.+++..+.+.|. ++||+.+ +|||++|+|++
T Consensus 10 ~~~ig~TPLv~l~~l~~~~~~~i~~K~E~~n-P-tGSfKdR~A~~~l~~~~~~g~~~~g~~~vv~aS--sGN~g~alA~~ 85 (322)
T PLN02565 10 TELIGKTPLVYLNNVVDGCVARIAAKLEMME-P-CSSVKDRIGYSMITDAEEKGLIKPGESVLIEPT--SGNTGIGLAFM 85 (322)
T ss_pred HHHhCCCceEEccccCCCCCceEEEEecccC-C-ccchHHHHHHHHHHHHHHcCCCCCCCcEEEEEC--CChHHHHHHHH
Confidence 3456778998876665545679999999995 7 689999999999998887775 5588765 49999999999
Q ss_pred HHHhCCeEEEEeCCCCCccccchhHHHHHCC-eEEEECCC-ChHHHHHHHHHHHHHHhccCCCccchhhhhhhhHhhhhh
Q 019910 162 CAERGLKSHLLLRGEQPQILTGYNLISTIYG-KVTYVPRT-HYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASLTAQKS 239 (334)
Q Consensus 162 aa~~Gl~~~ivv~~~~p~~~~gn~~~~~~~G-~V~~v~~~-~y~~~~~~~~~~a~~~~~~~g~~~w~~~~~~~~~~~~~~ 239 (334)
|+.+|++|+||||...|+. ++.+++.|| +|+.++.. .++++.+.++ +
T Consensus 86 a~~~G~~~~ivvp~~~~~~---k~~~i~~~GA~V~~~~~~~~~~~~~~~a~----~------------------------ 134 (322)
T PLN02565 86 AAAKGYKLIITMPASMSLE---RRIILLAFGAELVLTDPAKGMKGAVQKAE----E------------------------ 134 (322)
T ss_pred HHHcCCeEEEEeCCCCcHH---HHHHHHHcCCEEEEeCCCCCcHHHHHHHH----H------------------------
Confidence 9999999999999988765 567899999 99999853 2333322222 1
Q ss_pred hcccccchhhhhccccccCcEEEEcCCCcchhH-HHHHHHHHHHHHHhhhcCCCCCCEEEEcCCchhHHHHHHHHHHHcC
Q 019910 240 RASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVA-LLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGLGAICLG 318 (334)
Q Consensus 240 ~~~~~~~~~~~~~l~~~~~~~y~IpeGgs~p~a-~~G~~~la~EI~eq~~~g~~~~D~Vvvp~GtGgt~aGl~~g~k~lg 318 (334)
+....+..|++ .+..|+.. ..||.+++.||++|+ ++ .+|+||+|+|||||++|++.++|.++
T Consensus 135 -------------l~~~~~~~~~~-~q~~n~~n~~~~~~t~a~Ei~~q~--~~-~~d~vv~~vG~GG~l~Gi~~~lk~~~ 197 (322)
T PLN02565 135 -------------ILAKTPNSYIL-QQFENPANPKIHYETTGPEIWKGT--GG-KVDAFVSGIGTGGTITGAGKYLKEQN 197 (322)
T ss_pred -------------HHHhCCCcEee-cccCCHhHHHHHHHHHHHHHHHhc--CC-CCCEEEEcCCchHHHHHHHHHHHHhC
Confidence 11112233444 34455533 346999999999997 33 49999999999999999999999999
Q ss_pred CCCeEEEEEeccCCC
Q 019910 319 CVPLFNTLLVKLSRG 333 (334)
Q Consensus 319 ~~~~VigV~~~gs~~ 333 (334)
|.++|+||++.+|.-
T Consensus 198 p~~kvi~Vep~~s~~ 212 (322)
T PLN02565 198 PDIKLYGVEPVESAV 212 (322)
T ss_pred CCCEEEEEecCCCcc
Confidence 999999999998853
No 58
>PRK07334 threonine dehydratase; Provisional
Probab=99.97 E-value=3.8e-30 Score=256.00 Aligned_cols=188 Identities=14% Similarity=0.121 Sum_probs=152.4
Q ss_pred CCCcCCCCCccccCCCCeEEEEeCCCCCCCChhHHHHHHHhhhHHHH-hcCCCEEEEeCCccchHHHHHHHHHHHhCCeE
Q 019910 91 NTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLE-DHIVTDLVTCGGCQSAHATAVAVSCAERGLKS 169 (334)
Q Consensus 91 ~~Tp~l~~~~l~~~~g~~lyvKrDDl~~p~~gGnK~RkL~~lL~~a~-~~g~~~VVt~Gg~qsNh~~AvAaaaa~~Gl~~ 169 (334)
+.||++..+.+++..|.+||+|+|++| | +|+||+|...+.+..+. +.+.++||+++ +|||++|+|++|+++|++|
T Consensus 22 ~~TPl~~~~~l~~~~g~~l~~K~E~~n-p-tGS~KdR~a~~~i~~~~~~~~~~~vv~aS--sGN~g~alA~~a~~~G~~~ 97 (403)
T PRK07334 22 LRTPCVHSRTLSQITGAEVWLKFENLQ-F-TASFKERGALNKLLLLTEEERARGVIAMS--AGNHAQGVAYHAQRLGIPA 97 (403)
T ss_pred CCCCccchHHHHHhhCCeEEEEeccCC-C-CCCchHHHHHHHHHhcCHHHhCCcEEEEC--CcHHHHHHHHHHHHcCCCE
Confidence 558888888888777889999999995 7 69999999988887643 44567788765 5999999999999999999
Q ss_pred EEEeCCCCCccccchhHHHHHCC-eEEEECCCChHHHHHHHHHHHHHHhccCCCccchhhhhhhhHhhhhhhcccccchh
Q 019910 170 HLLLRGEQPQILTGYNLISTIYG-KVTYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASLTAQKSRASCLGQMD 248 (334)
Q Consensus 170 ~ivv~~~~p~~~~gn~~~~~~~G-~V~~v~~~~y~~~~~~~~~~a~~~~~~~g~~~w~~~~~~~~~~~~~~~~~~~~~~~ 248 (334)
++|||...|+. +...++.|| +|+.++. .|++..+.+++
T Consensus 98 ~iv~p~~~~~~---k~~~~~~~GA~v~~~~~-~~~~~~~~a~~------------------------------------- 136 (403)
T PRK07334 98 TIVMPRFTPTV---KVERTRGFGAEVVLHGE-TLDEARAHARE------------------------------------- 136 (403)
T ss_pred EEEECCCCCHH---HHHHHHHcCCEEEEECc-CHHHHHHHHHH-------------------------------------
Confidence 99999988753 667899999 9999974 46654333221
Q ss_pred hhhccccccCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhcCCCCCCEEEEcCCchhHHHHHHHHHHHcCCCCeEEEEEe
Q 019910 249 AHKGIDNCRKKVLIVNEGAGDAVALLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGLGAICLGCVPLFNTLLV 328 (334)
Q Consensus 249 ~~~~l~~~~~~~y~IpeGgs~p~a~~G~~~la~EI~eq~~~g~~~~D~Vvvp~GtGgt~aGl~~g~k~lg~~~~VigV~~ 328 (334)
+.... ..|++ .+..||....|+.+++.||++|+ + .+|+||+|+|||||++|++.+++.++++++|+||++
T Consensus 137 ----l~~~~-~~~~~-~~~~~~~~~~g~~t~~~Ei~~q~--~--~~d~vv~~vG~GG~~~Gi~~~lk~~~~~~~vi~ve~ 206 (403)
T PRK07334 137 ----LAEEE-GLTFV-HPYDDPAVIAGQGTVALEMLEDA--P--DLDTLVVPIGGGGLISGMATAAKALKPDIEIIGVQT 206 (403)
T ss_pred ----HHHhc-CCEec-CCCCCHHHHHhHHHHHHHHHhcC--C--CCCEEEEecCHHHHHHHHHHHHHHhCCCCEEEEEEE
Confidence 11112 22333 34557888999999999999997 2 589999999999999999999999999999999999
Q ss_pred ccCCC
Q 019910 329 KLSRG 333 (334)
Q Consensus 329 ~gs~~ 333 (334)
.+++.
T Consensus 207 ~~~~~ 211 (403)
T PRK07334 207 ELYPS 211 (403)
T ss_pred CCCch
Confidence 98753
No 59
>PRK08639 threonine dehydratase; Validated
Probab=99.97 E-value=3.3e-30 Score=257.81 Aligned_cols=192 Identities=15% Similarity=0.144 Sum_probs=149.0
Q ss_pred CCCcCCCCCccccCCCCeEEEEeCCCCCCCChhHHHHHHHhhhHHH-HhcCCCEEEEeCCccchHHHHHHHHHHHhCCeE
Q 019910 91 NTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLL-EDHIVTDLVTCGGCQSAHATAVAVSCAERGLKS 169 (334)
Q Consensus 91 ~~Tp~l~~~~l~~~~g~~lyvKrDDl~~p~~gGnK~RkL~~lL~~a-~~~g~~~VVt~Gg~qsNh~~AvAaaaa~~Gl~~ 169 (334)
+-||++..+++++..|.+||+|+|++| | +||||+|.+.+.+..+ .+.+.++||+++ +||||+++|++|+++|++|
T Consensus 24 ~~TPl~~~~~ls~~~g~~l~~K~E~~~-p-tGSfK~RgA~~~i~~l~~~~~~~~Vv~aS--sGN~g~alA~~a~~~G~~~ 99 (420)
T PRK08639 24 PETPLQRNDYLSEKYGANVYLKREDLQ-P-VRSYKLRGAYNAISQLSDEELAAGVVCAS--AGNHAQGVAYACRHLGIPG 99 (420)
T ss_pred cCCCccchHHHHHHhCCEEEEEecCCC-C-CCCcHHHHHHHHHHhCCHHhhCCEEEEEC--ccHHHHHHHHHHHHcCCCE
Confidence 558888888888888899999999995 7 6999999999888764 344567899876 4999999999999999999
Q ss_pred EEEeCCCCCccccchhHHHHHCC-eEEEEC--CCChHHHHHHHHHHHHHHhccCCCccchhhhhhhhHhhhhhhcccccc
Q 019910 170 HLLLRGEQPQILTGYNLISTIYG-KVTYVP--RTHYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASLTAQKSRASCLGQ 246 (334)
Q Consensus 170 ~ivv~~~~p~~~~gn~~~~~~~G-~V~~v~--~~~y~~~~~~~~~~a~~~~~~~g~~~w~~~~~~~~~~~~~~~~~~~~~ 246 (334)
+||||...|.. ++..++.|| +|+.|. .+.|++..+... +++.
T Consensus 100 ~IvmP~~~~~~---k~~~~r~~GA~vv~v~~~g~~~~~a~~~a~----~~a~---------------------------- 144 (420)
T PRK08639 100 VIFMPVTTPQQ---KIDQVRFFGGEFVEIVLVGDTFDDSAAAAQ----EYAE---------------------------- 144 (420)
T ss_pred EEEECCCChHH---HHHHHHHcCCCeeEEEEeCcCHHHHHHHHH----HHHH----------------------------
Confidence 99999988764 567899999 854432 234665433322 1111
Q ss_pred hhhhhccccccCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhcCCCCCCEEEEcCCchhHHHHHHHHHHHcCCCCeEEEE
Q 019910 247 MDAHKGIDNCRKKVLIVNEGAGDAVALLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGLGAICLGCVPLFNTL 326 (334)
Q Consensus 247 ~~~~~~l~~~~~~~y~IpeGgs~p~a~~G~~~la~EI~eq~~~g~~~~D~Vvvp~GtGgt~aGl~~g~k~lg~~~~VigV 326 (334)
..+..| ++ +..||....|+.+++.||.+|+. +...||+||+|+|||||++|++.+++.++|+++||||
T Consensus 145 ---------~~g~~~-~~-~~~~~~~~~G~~tig~EI~eq~~-~~~~~D~vv~~vG~GG~~aGva~~~k~~~p~~~vigV 212 (420)
T PRK08639 145 ---------ETGATF-IP-PFDDPDVIAGQGTVAVEILEQLE-KEGSPDYVFVPVGGGGLISGVTTYLKERSPKTKIIGV 212 (420)
T ss_pred ---------hcCCcc-cC-CCCChhHhcchhHHHHHHHHhcc-ccCCCCEEEEecChhHHHHHHHHHHHHhCCCCEEEEE
Confidence 112233 32 23467777888899999999983 1002899999999999999999999999999999999
Q ss_pred EeccCCC
Q 019910 327 LVKLSRG 333 (334)
Q Consensus 327 ~~~gs~~ 333 (334)
++.+++.
T Consensus 213 ep~~~~~ 219 (420)
T PRK08639 213 EPAGAAS 219 (420)
T ss_pred EECCCCc
Confidence 9998764
No 60
>KOG1250 consensus Threonine/serine dehydratases [Amino acid transport and metabolism]
Probab=99.97 E-value=1.9e-30 Score=252.18 Aligned_cols=187 Identities=17% Similarity=0.138 Sum_probs=153.7
Q ss_pred CCCCcCCCCCccccCCCCeEEEEeCCCCCCCChhHHHHHHHhhhHHH-HhcCCCEEEEeCCccchHHHHHHHHHHHhCCe
Q 019910 90 NNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLL-EDHIVTDLVTCGGCQSAHATAVAVSCAERGLK 168 (334)
Q Consensus 90 ~~~Tp~l~~~~l~~~~g~~lyvKrDDl~~p~~gGnK~RkL~~lL~~a-~~~g~~~VVt~Gg~qsNh~~AvAaaaa~~Gl~ 168 (334)
-.-||++.+-.|++..|.++|+||||+| | .||||.|+..+++... +++.+.+||++++ ||||+|+|++|+++|++
T Consensus 64 ~~~TPl~~s~~lS~~~g~~vyLK~E~lQ-p-sgSFK~RGa~~~~~kla~~~~~~gViasSa--GNha~a~Ayaa~~Lgip 139 (457)
T KOG1250|consen 64 IVETPLLKSVALSKKAGMPVYLKREDLQ-P-SGSFKIRGAGNALQKLAKQQKKAGVIASSA--GNHAQAAAYAARKLGIP 139 (457)
T ss_pred eecccchhhhhhhhhcCCceEEEehhcc-c-ccceehhhHHHHHHHHHHhhhcCceEEecC--ccHHHHHHHHHHhcCCc
Confidence 3458999988899999999999999996 6 6899999999998775 4455899997765 99999999999999999
Q ss_pred EEEEeCCCCCccccchhHHHHHCC-eEEEECCCChHHHHHHHHHHHHHHhccCCCccchhhhhhhhHhhhhhhcccccch
Q 019910 169 SHLLLRGEQPQILTGYNLISTIYG-KVTYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASLTAQKSRASCLGQM 247 (334)
Q Consensus 169 ~~ivv~~~~p~~~~gn~~~~~~~G-~V~~v~~~~y~~~~~~~~~~a~~~~~~~g~~~w~~~~~~~~~~~~~~~~~~~~~~ 247 (334)
|+||||..+|.. ++..++-+| +|+..+. .|++..+. |.+.|.++|..
T Consensus 140 aTIVmP~~tp~~---kiq~~~nlGA~Vil~G~-~~deAk~~----a~~lAke~gl~------------------------ 187 (457)
T KOG1250|consen 140 ATIVMPVATPLM---KIQRCRNLGATVILSGE-DWDEAKAF----AKRLAKENGLT------------------------ 187 (457)
T ss_pred eEEEecCCChHH---HHHHHhccCCEEEEecc-cHHHHHHH----HHHHHHhcCce------------------------
Confidence 999999998865 556788899 9998875 47754443 44555666432
Q ss_pred hhhhccccccCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhcCCCCCCEEEEcCCchhHHHHHHHHHHHcCCCCeEEEEE
Q 019910 248 DAHKGIDNCRKKVLIVNEGAGDAVALLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGLGAICLGCVPLFNTLL 327 (334)
Q Consensus 248 ~~~~~l~~~~~~~y~IpeGgs~p~a~~G~~~la~EI~eq~~~g~~~~D~Vvvp~GtGgt~aGl~~g~k~lg~~~~VigV~ 327 (334)
..+++++|++|..+ .+++.||.+|+. ..++.||||+|+||+++|++.+++.++|+++||||+
T Consensus 188 -----yI~pfDhP~I~aGq----------gTig~EIl~ql~---~~~~AI~vpVGGGGLiaGIat~vk~~~p~vkIIGVE 249 (457)
T KOG1250|consen 188 -----YIPPFDHPDIWAGQ----------GTIGLEILEQLK---EPDGAIVVPVGGGGLIAGIATGVKRVGPHVKIIGVE 249 (457)
T ss_pred -----ecCCCCCchhhcCc----------chHHHHHHHhhc---CCCCeEEEecCCchhHHHHHHHHHHhCCCCceEEEe
Confidence 45677777777433 359999999983 234599999999999999999999999999999999
Q ss_pred ecc
Q 019910 328 VKL 330 (334)
Q Consensus 328 ~~g 330 (334)
..+
T Consensus 250 t~~ 252 (457)
T KOG1250|consen 250 TEG 252 (457)
T ss_pred ecC
Confidence 865
No 61
>PRK02991 D-serine dehydratase; Provisional
Probab=99.97 E-value=5.6e-30 Score=257.46 Aligned_cols=213 Identities=13% Similarity=0.058 Sum_probs=164.9
Q ss_pred eeecccccccccCCCCCCCcccccCCCCcCCCCCccccCCC--------CeEEEEeCCCCCCCChhHHHHHHHhhhHH--
Q 019910 66 IHQIKLFTTTEKHGGGPLGGISFLNNTCPFLGDDMIMRDED--------RCFYVVRDDLLHPLVNGNKARKMDALLPL-- 135 (334)
Q Consensus 66 ~~~~~ll~~~~~~~~~~~~~~~~~~~~Tp~l~~~~l~~~~g--------~~lyvKrDDl~~p~~gGnK~RkL~~lL~~-- 135 (334)
.++.+|||. ..|.+..+...+-||++..+.+++..| .+||+|+|++| |.+||||+|...+++..
T Consensus 54 ~~~~~~~~~-----~~~~~~~~~~~~~TPL~~~~~l~~~~g~~~~~~~~~~V~lK~E~~n-p~tGSFK~RGA~~~i~~l~ 127 (441)
T PRK02991 54 KRFAPYLAK-----AFPETAATGGIIESPLVAIPAMQKALEKEYGQPISGRLLLKKDSHL-PISGSIKARGGIYEVLKHA 127 (441)
T ss_pred Hhhhhhhhh-----hCccccccCCccCCCceehHHHHHHhcccccCCcCceEEEEEcCCC-CCcCChHHHHHHHHHHHhh
Confidence 445578886 455555567788899999998887665 79999999995 64699999998777754
Q ss_pred ---HHhcCC---------------------CEEEEeCCccchHHHHHHHHHHHhCCeEEEEeCCCCCccccchhHHHHHC
Q 019910 136 ---LEDHIV---------------------TDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGEQPQILTGYNLISTIY 191 (334)
Q Consensus 136 ---a~~~g~---------------------~~VVt~Gg~qsNh~~AvAaaaa~~Gl~~~ivv~~~~p~~~~gn~~~~~~~ 191 (334)
+++.|. ++||+++ +||||+|+|++|+++|++|+||||...|+. +...++.|
T Consensus 128 ~~~a~~~G~~~~~~~~~~l~~~~~~~~~~~~~VV~aS--sGN~G~alA~aA~~~G~~~tIvvP~~a~~~---K~~~ir~~ 202 (441)
T PRK02991 128 EKLALEAGLLTLDDDYSKLASPEFRQFFSQYSIAVGS--TGNLGLSIGIMSAALGFKVTVHMSADARQW---KKDKLRSH 202 (441)
T ss_pred HHHHHHhCCCCcCcchhhhcchhhhhhccCcEEEEEC--CcHHHHHHHHHHHHcCCCEEEEECCCCCHH---HHHHHHhC
Confidence 345553 4688765 499999999999999999999999988765 56789999
Q ss_pred C-eEEEECCCChHHHHHHHHHHHHHHhccCCCccchhhhhhhhHhhhhhhcccccchhhhhccccccCcEEEEcCCCcch
Q 019910 192 G-KVTYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASLTAQKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDA 270 (334)
Q Consensus 192 G-~V~~v~~~~y~~~~~~~~~~a~~~~~~~g~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~IpeGgs~p 270 (334)
| +|+.++. .|+++.+.+++++ ...+..|+++. ..++
T Consensus 203 GAeVi~~~~-~~~~a~~~A~~la-----------------------------------------~~~~~~~~~~~-~~~~ 239 (441)
T PRK02991 203 GVTVVEYEG-DYGVAVEEGRKAA-----------------------------------------ESDPNCYFIDD-ENSR 239 (441)
T ss_pred CCEEEEECC-CHHHHHHHHHHHH-----------------------------------------HhcCCeEeCCC-CCch
Confidence 9 9999985 5876554433211 11123454533 3566
Q ss_pred hHHHHHHHHHHHHHHhhhc-CC----CCCCEEEEcCCchhHHHHHHHHHHHc-CCCCeEEEEEeccCC
Q 019910 271 VALLGVFRLLQYLSQDHLL-GR----KRAIKFVVDAGTGTTAVGLGLGAICL-GCVPLFNTLLVKLSR 332 (334)
Q Consensus 271 ~a~~G~~~la~EI~eq~~~-g~----~~~D~Vvvp~GtGgt~aGl~~g~k~l-g~~~~VigV~~~gs~ 332 (334)
.-..|+.+++.||++|+.. ++ +.||+||||+|+||+++|++.+++.+ .+.++||+|++.+++
T Consensus 240 ~~iaG~~Tig~EI~eQl~~~~~~vD~~~Pd~VvvpvGgGGliaGia~~lk~~~~~~~kVigVEp~ga~ 307 (441)
T PRK02991 240 TLFLGYAVAGLRLKAQLAEQGIVVDADHPLFVYLPCGVGGGPGGVAFGLKLAFGDHVHCFFAEPTHSP 307 (441)
T ss_pred hHHHhHHHHHHHHHHHhhhccCccccCCCCEEEEEeCccHHHHHHHHHHHHhcCCCCEEEEEecCCCh
Confidence 7788999999999999841 11 13789999999999999999999997 788999999998875
No 62
>PLN03013 cysteine synthase
Probab=99.97 E-value=1.7e-29 Score=252.38 Aligned_cols=196 Identities=14% Similarity=0.052 Sum_probs=158.8
Q ss_pred ccccCCCCcCCCCCccccCCCCeEEEEeCCCCCCCChhHHHHHHHhhhHHHHhcCC-----CEEEEeCCccchHHHHHHH
Q 019910 86 ISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIV-----TDLVTCGGCQSAHATAVAV 160 (334)
Q Consensus 86 ~~~~~~~Tp~l~~~~l~~~~g~~lyvKrDDl~~p~~gGnK~RkL~~lL~~a~~~g~-----~~VVt~Gg~qsNh~~AvAa 160 (334)
+....+.||++..+.+++..+++||+|.|.+ +| +|++|+|.+.++|..+++.|. ++||+.+ +||||+|+|+
T Consensus 117 i~~~iG~TPLv~l~~l~~~~g~~Iy~KlE~l-NP-tGSfKdR~A~~~l~~a~~~G~l~pG~~~VVeaS--SGN~G~ALA~ 192 (429)
T PLN03013 117 VSQLIGKTPMVYLNSIAKGCVANIAAKLEIM-EP-CCSVKDRIGYSMVTDAEQKGFISPGKSVLVEPT--SGNTGIGLAF 192 (429)
T ss_pred HHhcCCCCCeEECcccccccCCeEEEEeccC-CC-ccccHHHHHHHHHHHHHHcCCcCCCCcEEEEEC--CcHHHHHHHH
Confidence 3456688999999888887788999999999 57 699999999999999988885 5688765 4999999999
Q ss_pred HHHHhCCeEEEEeCCCCCccccchhHHHHHCC-eEEEECCCC-hHHHHHHHHHHHHHHhccCCCccchhhhhhhhHhhhh
Q 019910 161 SCAERGLKSHLLLRGEQPQILTGYNLISTIYG-KVTYVPRTH-YAHRIEMLKSYANLVAGNNGDVVWCNEIFEASLTAQK 238 (334)
Q Consensus 161 aaa~~Gl~~~ivv~~~~p~~~~gn~~~~~~~G-~V~~v~~~~-y~~~~~~~~~~a~~~~~~~g~~~w~~~~~~~~~~~~~ 238 (334)
+|+.+|++|+||||...++. +..+++.|| +|+.++... ++.+.+..++
T Consensus 193 ~a~~~G~~~~VvvP~~~s~~---K~~~ira~GAeVi~v~~~~~~~~a~~~A~e--------------------------- 242 (429)
T PLN03013 193 IAASRGYRLILTMPASMSME---RRVLLKAFGAELVLTDPAKGMTGAVQKAEE--------------------------- 242 (429)
T ss_pred HHHHcCCCEEEEECCCCcHH---HHHHHHHcCCEEEEECCCCChHHHHHHHHH---------------------------
Confidence 99999999999999988764 567899999 999997532 2222222111
Q ss_pred hhcccccchhhhhccccccCcEEEEcCCCcchhHHH-HHHHHHHHHHHhhhcCCCCCCEEEEcCCchhHHHHHHHHHHHc
Q 019910 239 SRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVALL-GVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGLGAICL 317 (334)
Q Consensus 239 ~~~~~~~~~~~~~~l~~~~~~~y~IpeGgs~p~a~~-G~~~la~EI~eq~~~g~~~~D~Vvvp~GtGgt~aGl~~g~k~l 317 (334)
+....+..|+ +.+..||.... ||.+++.||++|+ ++ .+|+||+|+|||||++|+++++++.
T Consensus 243 --------------la~~~~g~~~-~~qy~Np~n~~ah~~ttg~EI~eq~--~~-~~D~vV~~vGtGGtisGiar~lKe~ 304 (429)
T PLN03013 243 --------------ILKNTPDAYM-LQQFDNPANPKIHYETTGPEIWDDT--KG-KVDIFVAGIGTGGTITGVGRFIKEK 304 (429)
T ss_pred --------------HHhhcCCeEe-CCCCCCHHHHHHHHHHHHHHHHHhc--CC-CCCEEEEeCCccHHHHHHHHHHHhh
Confidence 1112223454 46677888874 8999999999997 32 5999999999999999999999999
Q ss_pred CCCCeEEEEEeccCCC
Q 019910 318 GCVPLFNTLLVKLSRG 333 (334)
Q Consensus 318 g~~~~VigV~~~gs~~ 333 (334)
.|+++||||++.+|..
T Consensus 305 ~P~vkVigVep~gs~~ 320 (429)
T PLN03013 305 NPKTQVIGVEPTESDI 320 (429)
T ss_pred CCCCEEEEEEeCCCch
Confidence 9999999999999853
No 63
>cd06447 D-Ser-dehyd D-Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- or D-serine to pyruvate and ammonia. D-serine dehydratase serves as a detoxifying enzyme in most E. coli strains where D-serine is a competitive antagonist of beta-alanine in the biosynthetic pathway to pentothenate and coenzyme A. D-serine dehydratase is different from other pyridoxal-5'-phosphate-dependent enzymes in that it catalyzes alpha, beta-elimination reactions on amino acids.
Probab=99.97 E-value=1.1e-29 Score=252.67 Aligned_cols=196 Identities=14% Similarity=0.095 Sum_probs=153.1
Q ss_pred ccCCCCcCCCCCccccCCC--------CeEEEEeCCCCCCCChhHHHHHHHhhhHH-----HHhcCC-------------
Q 019910 88 FLNNTCPFLGDDMIMRDED--------RCFYVVRDDLLHPLVNGNKARKMDALLPL-----LEDHIV------------- 141 (334)
Q Consensus 88 ~~~~~Tp~l~~~~l~~~~g--------~~lyvKrDDl~~p~~gGnK~RkL~~lL~~-----a~~~g~------------- 141 (334)
...+-||++..+.+++..| .+||+|.|.+| |.+||||+|...+++.. +.+.|.
T Consensus 48 ~~~~~TPLv~~~~ls~~~g~~~~~~~~~~v~~K~E~~n-P~tGSfKdRgA~~~i~~l~~~~a~~~G~l~pg~~~~~~~~~ 126 (404)
T cd06447 48 HGIIESPLLPIPRMKQALEKLYHQPIKGRLLLKADSHL-PISGSIKARGGIYEVLKHAEKLALEHGLLTLEDDYSKLASE 126 (404)
T ss_pred CCccCCCceehHHHHHHhccccccCcCceEEEEecCCC-CCCCChHHHHHHHHHHHHhHHHHHHhCCCCcccchhhhhhh
Confidence 3467799999988887654 79999999995 75699999999887753 555554
Q ss_pred --------CEEEEeCCccchHHHHHHHHHHHhCCeEEEEeCCCCCccccchhHHHHHCC-eEEEECCCChHHHHHHHHHH
Q 019910 142 --------TDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGEQPQILTGYNLISTIYG-KVTYVPRTHYAHRIEMLKSY 212 (334)
Q Consensus 142 --------~~VVt~Gg~qsNh~~AvAaaaa~~Gl~~~ivv~~~~p~~~~gn~~~~~~~G-~V~~v~~~~y~~~~~~~~~~ 212 (334)
++||+++ +||||+++|++|+.+|++|+||||...|.. ++..++.|| +|+.++. .|+++.+.++++
T Consensus 127 ~~~~~~~~~~VV~aS--sGN~G~alA~~a~~~G~~~~IvvP~~~~~~---K~~~ira~GAeVv~v~~-~~~~a~~~a~~l 200 (404)
T cd06447 127 KFRKLFSQYSIAVGS--TGNLGLSIGIMAAALGFKVTVHMSADAKQW---KKDKLRSKGVTVVEYET-DYSKAVEEGRKQ 200 (404)
T ss_pred hhhhcccCCEEEEEC--ccHHHHHHHHHHHHcCCCEEEEECCCCcHH---HHHHHHHCCCEEEEECC-CHHHHHHHHHHH
Confidence 4788765 499999999999999999999999988765 567899999 9999985 577654433221
Q ss_pred HHHHhccCCCccchhhhhhhhHhhhhhhcccccchhhhhccccccCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhc-C-
Q 019910 213 ANLVAGNNGDVVWCNEIFEASLTAQKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVALLGVFRLLQYLSQDHLL-G- 290 (334)
Q Consensus 213 a~~~~~~~g~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~IpeGgs~p~a~~G~~~la~EI~eq~~~-g- 290 (334)
....+..|+++. ..++.-..|+.+++.||++|+.. +
T Consensus 201 -----------------------------------------a~~~~~~~~v~~-~n~~~~iaG~~T~g~EI~eQl~~~~~ 238 (404)
T cd06447 201 -----------------------------------------AAADPMCYFVDD-ENSRDLFLGYAVAASRLKAQLAELGI 238 (404)
T ss_pred -----------------------------------------HHHCCCeEeCCC-CCchhHHhhHHHHHHHHHHHhhhccC
Confidence 111223455543 44567788999999999999831 1
Q ss_pred ---CCCCCEEEEcCCchhHHHHHHHHHHHc-CCCCeEEEEEeccCC
Q 019910 291 ---RKRAIKFVVDAGTGTTAVGLGLGAICL-GCVPLFNTLLVKLSR 332 (334)
Q Consensus 291 ---~~~~D~Vvvp~GtGgt~aGl~~g~k~l-g~~~~VigV~~~gs~ 332 (334)
+..||+||||+|+|||++|++++++.+ ++.++||+|++.+++
T Consensus 239 ~vD~~~Pd~VvvpvG~GGli~GIa~~lK~~~~p~~kVigVeP~~ap 284 (404)
T cd06447 239 KVDAEHPLFVYLPCGVGGAPGGVAFGLKLIFGDNVHCFFAEPTHSP 284 (404)
T ss_pred ccccCCCCEEEEecCccHHHHHHHHHHHHhcCCCCEEEEEccCCCh
Confidence 124678999999999999999999997 889999999998875
No 64
>TIGR01415 trpB_rel pyridoxal-phosphate dependent TrpB-like enzyme. This model represents a family of pyridoxal-phosphate dependent enzyme (pfam00291) closely related to the beta subunit of tryptophan synthase (TIGR00263). However, the only case in which a member of this family replaces a member of TIGR00263 is in Sulfolobus species which contain two sequences which hit this model, one of which is proximal to the alpha subunit. In every other case so far, either the species appears not to make tryptophan (there is no trp synthase alpha subunit), or a trp synthase beta subunit matching TIGR00263 is also found.
Probab=99.97 E-value=2.4e-29 Score=251.60 Aligned_cols=246 Identities=15% Similarity=0.080 Sum_probs=172.8
Q ss_pred HHHHHHhhhhhhccCCCCceeecccc-cccccCCCCCCCcccccCCCCcCCCCCccccCCC--CeEEEEeCCCCCCCChh
Q 019910 47 ELLSRLLDRKWALTSPDSKIHQIKLF-TTTEKHGGGPLGGISFLNNTCPFLGDDMIMRDED--RCFYVVRDDLLHPLVNG 123 (334)
Q Consensus 47 ~~~~~~~~~~~~~~~p~~~~~~~~ll-~~~~~~~~~~~~~~~~~~~~Tp~l~~~~l~~~~g--~~lyvKrDDl~~p~~gG 123 (334)
+.+.++..++++... .+.|||+++. +++ .......+-||+++.++|++..| .+||+|+|++| | +||
T Consensus 31 ~~~~~~~~~~~~~~e-~~~~r~~~~~~~v~--------~~~~l~g~pTPL~r~~~L~~~lg~~~~Iy~K~E~~n-P-tGS 99 (419)
T TIGR01415 31 EKLKRIFPEKLLEQE-VSGERWIKIPGEVL--------KRYAQIGRPTPLIRAKGLEELLGTPARIYYKYESVS-P-TGS 99 (419)
T ss_pred HHHhhhCcHHHHhcc-ccHhhHHhhHHHHH--------HHHHhcCCCCCeEEccchhhhhCCCceEEEEECCCC-C-CCC
Confidence 446777767766644 4579999886 442 12233435699999998888776 68999999995 7 589
Q ss_pred HHHHHHHhhhHHHHhcCCCEEEEeCCccchHHHHHHHHHHHhCCeEEEEeCCCCCccccchhHHHHHCC-eEEEECCCCh
Q 019910 124 NKARKMDALLPLLEDHIVTDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGEQPQILTGYNLISTIYG-KVTYVPRTHY 202 (334)
Q Consensus 124 nK~RkL~~lL~~a~~~g~~~VVt~Gg~qsNh~~AvAaaaa~~Gl~~~ivv~~~~p~~~~gn~~~~~~~G-~V~~v~~~~y 202 (334)
||+|.+...+..+++.|.+++|+..| .||||.|+|++|+.+|++|+||||...+..+..+..+++.|| +|+.++.. +
T Consensus 100 ~K~R~A~~~~~~a~~~G~~~~vtets-sGN~G~alA~aaa~~Gl~~~V~mp~~s~~~k~~k~~~m~~~GA~Vi~~~~~-~ 177 (419)
T TIGR01415 100 HKINTAIAQAYYAKIEGAKRLVTETG-AGQWGSALSLAGALFGLECKVFMVRVSFNQKPYRKYLMELYGAEVIPSPSE-F 177 (419)
T ss_pred cHHHHHHHHHHHHHHcCCCeEEEecC-chHHHHHHHHHHHHcCCcEEEEEeCCCcccCHHHHHHHHHcCCEEEEECCc-h
Confidence 99999999999999999999998533 499999999999999999999999855443334668999999 99999853 5
Q ss_pred HHHHHHHHHHHHHHhcc---CCCccchhhhhhhhHhhhhhhcccccchhhhhccccccCcEEEEcCCCcchhHHHHHHHH
Q 019910 203 AHRIEMLKSYANLVAGN---NGDVVWCNEIFEASLTAQKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVALLGVFRL 279 (334)
Q Consensus 203 ~~~~~~~~~~a~~~~~~---~g~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~IpeGgs~p~a~~G~~~l 279 (334)
++..+.+. +.+ -|..+|. +. ++.+......+..|+. ....|+. ..|+.++
T Consensus 178 ~~~~r~~~------~~~p~~~gsl~~a---i~----------------~a~e~a~~~~~~~y~~-~~~~n~~-~~h~~~i 230 (419)
T TIGR01415 178 TEFGREVL------KEDPDHPGSLGIA---IS----------------EAIEYALSDEDTKYSL-GSVLNHV-LLHQTVI 230 (419)
T ss_pred hhHHHHhh------hcccccccchHHH---HH----------------HHHHHHHhCCCCEEEe-CCCCcHH-HHHHHHH
Confidence 53222110 011 1111110 00 0111111223345654 4444433 4467789
Q ss_pred HHHHHHhhhcCCCCCCEEEEcCCchhHHHHHHHHHHH---cC-CCCeEEEEEeccCC
Q 019910 280 LQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGLGAIC---LG-CVPLFNTLLVKLSR 332 (334)
Q Consensus 280 a~EI~eq~~~g~~~~D~Vvvp~GtGgt~aGl~~g~k~---lg-~~~~VigV~~~gs~ 332 (334)
++||.+|+..-...||+||+|+|||||++|++.+|.. .+ ++++||||++++++
T Consensus 231 g~Ei~~Ql~~~g~~pD~vv~~vG~Gg~~~Gi~~~f~~~~l~g~~~~rviaVep~~~~ 287 (419)
T TIGR01415 231 GLEAKKQMEEAGEDPDVIIGCVGGGSNFAGLAFPFVADKLSGKIDRRFIAAEPKACP 287 (419)
T ss_pred HHHHHHHHHhcCCCCCEEEEEeCchHHHHHHHHHHHHHHhcCCCCCEEEEEeeCCCh
Confidence 9999999842123599999999999999999999832 24 58999999998874
No 65
>PF00291 PALP: Pyridoxal-phosphate dependent enzyme; InterPro: IPR001926 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. Pyridoxal-5'-phosphate-dependent enzymes (B6 enzymes) catalyze manifold reactions in the metabolism of amino acids. Most of these enzymes can be assigned to one of three different families of homologous proteins, the alpha, beta and gamma families. The alpha and gamma family might be distantly related with one another, but are clearly not homologous with the beta family. The beta family includes L- and D-serine dehydratase, threonine dehydratase, the beta subunit of tryptophan synthase, threonine synthase and cysteine synthase. These enzymes catalyze beta-replacement or beta-elimination reactions []. Comparison of sequences from eukaryotic, archebacterial, and eubacterial species indicates that the functional specialization of most B6 enzymes has occurred already in the universal ancestor cell. The cofactor pyridoxal-5-phosphate must have emerged very early in biological evolution; conceivably, organic cofactors and metal ions were the first biological catalysts []. The 3D structure of the beta-subunit of tryptophan synthase has been solved. The subunit has two domains that are approximately the same size and similar to each other in folding pattern. Each has a core containing a four-stranded parallel beta-sheet with three helices on its inner side and one on the outer side. The cofactor is bound at the interface between the domains [].; GO: 0003824 catalytic activity, 0030170 pyridoxal phosphate binding, 0008152 metabolic process; PDB: 1P5J_A 2D1F_B 3AEY_B 3AEX_B 3IAU_A 2Q3B_A 2Q3D_A 2Q3C_A 1TZJ_A 1RQX_D ....
Probab=99.97 E-value=2e-29 Score=238.83 Aligned_cols=197 Identities=19% Similarity=0.146 Sum_probs=152.0
Q ss_pred cccCCCCcCCCC--CccccCCCCeEEEEeCCCCCCCChhHHHHHHHhhhHHHHhcCCCEEEEeCCccchHHHHHHHHHHH
Q 019910 87 SFLNNTCPFLGD--DMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIVTDLVTCGGCQSAHATAVAVSCAE 164 (334)
Q Consensus 87 ~~~~~~Tp~l~~--~~l~~~~g~~lyvKrDDl~~p~~gGnK~RkL~~lL~~a~~~g~~~VVt~Gg~qsNh~~AvAaaaa~ 164 (334)
+...+-||++.. ..+++..+.+||+|+||++ | +||||+|++.+++..+++++.++|+.. ++|||+.|+|++|++
T Consensus 2 ~~~~~~TPl~~~~~~~~~~~~~~~i~~K~E~~~-p-tgs~K~R~a~~~l~~a~~~~~~~vv~a--ssGN~g~a~A~~a~~ 77 (306)
T PF00291_consen 2 SLGIGPTPLVRLPSRLLSELGGANIYLKREDLN-P-TGSFKDRGAYYLLSRAKEKGGRTVVGA--SSGNHGRALAYAAAR 77 (306)
T ss_dssp GGGSSSS-EEEEHEHHHHHCTTSEEEEEEGGGS-T-TSBTHHHHHHHHHHHHHHTTTSEEEEE--SSSHHHHHHHHHHHH
T ss_pred cCCCcCCCEEECccccchhccCCeEEEEECCCC-C-cCCcccccchhhhhhccccccceeeee--ccCCceehhhhhhhh
Confidence 345667888883 4566777899999999996 8 789999999999999999999999754 369999999999999
Q ss_pred hCCeEEEEeCCCCCccccchhHHHHHCC-eEEEECCCChHHHHHHHHHHHHHHhccCCCccchhhhhhhhHhhhhhhccc
Q 019910 165 RGLKSHLLLRGEQPQILTGYNLISTIYG-KVTYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASLTAQKSRASC 243 (334)
Q Consensus 165 ~Gl~~~ivv~~~~p~~~~gn~~~~~~~G-~V~~v~~~~y~~~~~~~~~~a~~~~~~~g~~~w~~~~~~~~~~~~~~~~~~ 243 (334)
+|++|++|+|.+.++ .+..+++.|| +|+.++.. ++...+.+..+++.
T Consensus 78 ~g~~~~i~~p~~~~~---~~~~~~~~~Ga~v~~~~~~-~~~~~~~~~~~~~~---------------------------- 125 (306)
T PF00291_consen 78 LGLKCTIVVPEDVSP---EKLKQMRALGAEVILVPGD-VEGAFDDAQELAKE---------------------------- 125 (306)
T ss_dssp HTCEEEEEEETTSHH---HHHHHHHHTTCEEEEESST-HHHHHHHHHHHHHH----------------------------
T ss_pred ccccceeeecccccc---ccccceeeecceEEEcccc-cccccccccccccc----------------------------
Confidence 999999999998654 4778999999 99998753 44333332222210
Q ss_pred ccchhhhhccccccCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhcCCCCCCEEEEcCCchhHHHHHHHHHHH--cCCCC
Q 019910 244 LGQMDAHKGIDNCRKKVLIVNEGAGDAVALLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGLGAIC--LGCVP 321 (334)
Q Consensus 244 ~~~~~~~~~l~~~~~~~y~IpeGgs~p~a~~G~~~la~EI~eq~~~g~~~~D~Vvvp~GtGgt~aGl~~g~k~--lg~~~ 321 (334)
... ...+.... +.+. .++....|+.+++.||.+|+. ..++|.||+|+|||+|++|++.+++. . +++
T Consensus 126 -----~~~-~~~~~~~~--~~~~-~~~~~~~g~~~~~~Ei~~q~~--~~d~d~vvv~~GtGg~~~Gi~~~~~~~~~-~~~ 193 (306)
T PF00291_consen 126 -----RAE-LLSPFNGE--LNQY-NNPNVIAGYATIGLEIYEQLG--KPDPDYVVVPVGTGGTAAGIAAGLKELIL-PPV 193 (306)
T ss_dssp -----HHH-HHHHSTTE--ESTT-TSHHHHHHHHHHHHHHHHHHT--TESESEEEEEESSSHHHHHHHHHHHHHCH-TTS
T ss_pred -----ccc-cccccccc--cCcc-cchhhhhhhhhcchhcccccc--cccceEEEecCCchhHHHHHHhhhhhhhc-ccc
Confidence 000 11111111 4444 789999999999999999983 22334599999999999999999999 7 899
Q ss_pred eEEEEEeccC
Q 019910 322 LFNTLLVKLS 331 (334)
Q Consensus 322 ~VigV~~~gs 331 (334)
+|+||++.++
T Consensus 194 ~vigv~~~~~ 203 (306)
T PF00291_consen 194 RVIGVEPEGS 203 (306)
T ss_dssp EEEEEEETTG
T ss_pred cceeeeccCC
Confidence 9999999876
No 66
>PLN02356 phosphateglycerate kinase
Probab=99.97 E-value=6.2e-29 Score=248.13 Aligned_cols=217 Identities=14% Similarity=-0.015 Sum_probs=153.5
Q ss_pred cCCCCcCCCCCccccCCCCeEEEEeCCCCCCCChhHHHHHHHhhhHHHHhcCCC---EEEEeCCccchHHHHHHHHHHHh
Q 019910 89 LNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIVT---DLVTCGGCQSAHATAVAVSCAER 165 (334)
Q Consensus 89 ~~~~Tp~l~~~~l~~~~g~~lyvKrDDl~~p~~gGnK~RkL~~lL~~a~~~g~~---~VVt~Gg~qsNh~~AvAaaaa~~ 165 (334)
.-+-||++..+.++...|.+||+|+|++| | +||||+|.+.+++..|.+.|.. ++|++.| +||||+|+|++|+.+
T Consensus 50 ~ig~TPLv~~~~l~~~~g~~v~~KlE~~n-P-tGS~KdR~A~~~i~~a~~~g~~~~~g~VveaS-SGN~g~alA~~aa~~ 126 (423)
T PLN02356 50 AIGNTPLIRINSLSEATGCEILGKCEFLN-P-GGSVKDRVAVKIIEEALESGQLFPGGVVTEGS-AGSTAISLATVAPAY 126 (423)
T ss_pred hcCCCceEECcccccccCCEEEEEeccCC-C-CCCHHHHHHHHHHHHHHhCCccCCCCEEEEeC-CHHHHHHHHHHHHHc
Confidence 34779999999888888999999999995 7 6999999999999999887753 3555433 599999999999999
Q ss_pred CCeEEEEeCCCCCccccchhHHHHHCC-eEEEECC------CChHHHH----HHHHHHHHHHhccCCCccchhhhhhhhH
Q 019910 166 GLKSHLLLRGEQPQILTGYNLISTIYG-KVTYVPR------THYAHRI----EMLKSYANLVAGNNGDVVWCNEIFEASL 234 (334)
Q Consensus 166 Gl~~~ivv~~~~p~~~~gn~~~~~~~G-~V~~v~~------~~y~~~~----~~~~~~a~~~~~~~g~~~w~~~~~~~~~ 234 (334)
|++|+||||...++. +..+++.|| +|+.++. ..|.... +...+++++.++.++..+|.. +
T Consensus 127 G~~~~ivvP~~~s~~---K~~~ir~~GAeVi~v~~~~~~~~~~~~~~a~~~~~~a~e~a~~~~~~~~~~~~~~--~---- 197 (423)
T PLN02356 127 GCKCHVVIPDDVAIE---KSQILEALGATVERVRPVSITHKDHYVNIARRRALEANELASKRRKGSETDGIHL--E---- 197 (423)
T ss_pred CCcEEEEECCCCcHH---HHHHHHHcCCEEEEECCccCCCcchhHHHHHHHHHHHHHHHHHhhhccccccccc--c----
Confidence 999999999988765 557899999 9999953 1221100 111222222222222222300 0
Q ss_pred hhhhhhcccccchhhhhccccc-------cCcEEEEcCCCcchhH--HHHHHHHHHHHHHhhhcCCCCCCEEEEcCCchh
Q 019910 235 TAQKSRASCLGQMDAHKGIDNC-------RKKVLIVNEGAGDAVA--LLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGT 305 (334)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~l~~~-------~~~~y~IpeGgs~p~a--~~G~~~la~EI~eq~~~g~~~~D~Vvvp~GtGg 305 (334)
+.+.. ..+.+++ .+..|+ +.+..|+.. ..|..| +.||++|+ ++ .+|+||+|+||||
T Consensus 198 -------~~~~~---~~~~~~~~~~~~~~~~~~~~-~~q~~n~~n~~ahg~gT-g~EI~eQl--~g-~~D~vVv~vGtGG 262 (423)
T PLN02356 198 -------KTNGC---ISEEEKENSLFSSSCTGGFF-ADQFENLANFRAHYEGT-GPEIWEQT--QG-NLDAFVAAAGTGG 262 (423)
T ss_pred -------ccccc---cccccccccccccCCCCcEe-cCccCCcchHHHHHhhH-HHHHHHhc--CC-CCCEEEeCCCchH
Confidence 00000 0000000 123343 466677665 444444 99999997 32 5999999999999
Q ss_pred HHHHHHHHHHHcCCCCeEEEEEeccCC
Q 019910 306 TAVGLGLGAICLGCVPLFNTLLVKLSR 332 (334)
Q Consensus 306 t~aGl~~g~k~lg~~~~VigV~~~gs~ 332 (334)
|++|+++++|+++|+++|+||++.+|.
T Consensus 263 ti~Gva~~lK~~~P~vkVigVep~~s~ 289 (423)
T PLN02356 263 TLAGVSRFLQEKNPNIKCFLIDPPGSG 289 (423)
T ss_pred HHHHHHHHHHHhCCCCEEEEEecCCCc
Confidence 999999999999999999999998875
No 67
>PRK08246 threonine dehydratase; Provisional
Probab=99.97 E-value=2.6e-29 Score=242.08 Aligned_cols=183 Identities=17% Similarity=0.109 Sum_probs=143.9
Q ss_pred CCCCcCCCCCccccCCCCeEEEEeCCCCCCCChhHHHHHHHhhhHHHHhcCCCEEEEeCCccchHHHHHHHHHHHhCCeE
Q 019910 90 NNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIVTDLVTCGGCQSAHATAVAVSCAERGLKS 169 (334)
Q Consensus 90 ~~~Tp~l~~~~l~~~~g~~lyvKrDDl~~p~~gGnK~RkL~~lL~~a~~~g~~~VVt~Gg~qsNh~~AvAaaaa~~Gl~~ 169 (334)
-+-||++..+.++.. +.+||+|+|++| | +||||+|.+.+++..+.+ +.++||+.++ |||++|+|++|+++|++|
T Consensus 21 i~~TPl~~~~~l~~~-~~~i~~K~E~~n-p-tGS~K~R~a~~~~~~~~~-~~~~vv~aSs--GN~g~a~A~~a~~~G~~~ 94 (310)
T PRK08246 21 IRRTPVLEADGAGFG-PAPVWLKLEHLQ-H-TGSFKARGAFNRLLAAPV-PAAGVVAASG--GNAGLAVAYAAAALGVPA 94 (310)
T ss_pred CCCCCeeeccccccC-CCEEEEEECCCC-C-CCCCHHHHHHHHHHhhcc-cCCeEEEeCC--CHHHHHHHHHHHHcCCCE
Confidence 345888888777655 689999999995 7 699999998888877655 6788887654 999999999999999999
Q ss_pred EEEeCCCCCccccchhHHHHHCC-eEEEECCCChHHHHHHHHHHHHHHhccCCCccchhhhhhhhHhhhhhhcccccchh
Q 019910 170 HLLLRGEQPQILTGYNLISTIYG-KVTYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASLTAQKSRASCLGQMD 248 (334)
Q Consensus 170 ~ivv~~~~p~~~~gn~~~~~~~G-~V~~v~~~~y~~~~~~~~~~a~~~~~~~g~~~w~~~~~~~~~~~~~~~~~~~~~~~ 248 (334)
++|||...++. +..+++.|| +|+.++. .|++..+... +++.+.
T Consensus 95 ~iv~p~~~~~~---k~~~~~~~GA~V~~~~~-~~~~~~~~a~----~~~~~~---------------------------- 138 (310)
T PRK08246 95 TVFVPETAPPA---KVARLRALGAEVVVVGA-EYADALEAAQ----AFAAET---------------------------- 138 (310)
T ss_pred EEEECCCCcHH---HHHHHHHCCCEEEEeCC-CHHHHHHHHH----HHHHhc----------------------------
Confidence 99999987654 567899999 9999985 4664333222 111111
Q ss_pred hhhccccccCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhcCCCCCCEEEEcCCchhHHHHHHHHHHHcCCCCeEEEEEe
Q 019910 249 AHKGIDNCRKKVLIVNEGAGDAVALLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGLGAICLGCVPLFNTLLV 328 (334)
Q Consensus 249 ~~~~l~~~~~~~y~IpeGgs~p~a~~G~~~la~EI~eq~~~g~~~~D~Vvvp~GtGgt~aGl~~g~k~lg~~~~VigV~~ 328 (334)
..|++ .+..||....|+.++++||.+|+ + .||+||+|+|||||++|++.+++. .++|+||++
T Consensus 139 ----------g~~~~-~~~~n~~~i~g~~t~~~Ei~eq~--~--~~D~iv~~vG~GG~~~Gi~~~~~~---~~~vi~ve~ 200 (310)
T PRK08246 139 ----------GALLC-HAYDQPEVLAGAGTLGLEIEEQA--P--GVDTVLVAVGGGGLIAGIAAWFEG---RARVVAVEP 200 (310)
T ss_pred ----------CCEeC-CCCCChhhhcchHHHHHHHHHhc--C--CCCEEEEecCccHHHHHHHHHhcC---CCEEEEEee
Confidence 12322 44556667778999999999997 2 599999999999999999999964 589999999
Q ss_pred ccCC
Q 019910 329 KLSR 332 (334)
Q Consensus 329 ~gs~ 332 (334)
.+++
T Consensus 201 ~~~~ 204 (310)
T PRK08246 201 EGAP 204 (310)
T ss_pred CCCh
Confidence 8875
No 68
>PRK08206 diaminopropionate ammonia-lyase; Provisional
Probab=99.97 E-value=3e-29 Score=249.55 Aligned_cols=192 Identities=13% Similarity=0.072 Sum_probs=145.3
Q ss_pred CCcCCCCCccccCCC-CeEEEEeCCCCCCCChhHHHHHHHhhhHHHH--hcCCC---------------------EEEEe
Q 019910 92 TCPFLGDDMIMRDED-RCFYVVRDDLLHPLVNGNKARKMDALLPLLE--DHIVT---------------------DLVTC 147 (334)
Q Consensus 92 ~Tp~l~~~~l~~~~g-~~lyvKrDDl~~p~~gGnK~RkL~~lL~~a~--~~g~~---------------------~VVt~ 147 (334)
-||++..+.|++..| .+||+|+|++++| +||||+|...+.+..+. +.+.+ +||+.
T Consensus 44 ~TPL~~~~~l~~~~G~~~v~~K~E~~q~p-tgSFK~RG~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~a 122 (399)
T PRK08206 44 PTPLVALPDLAAELGVGSILVKDESYRFG-LNAFKALGGAYAVARLLAEKLGLDISELSFEELTSGEVREKLGDITFATA 122 (399)
T ss_pred CCCCcchHHHHHHhCCCcEEEecccCcCC-CCChHHhhHHHHHHHHHHHHhCCCcccCCHHHhhhhHHHHhccCCEEEEe
Confidence 377788778888888 6999999998668 69999999877766643 22321 35543
Q ss_pred CCccchHHHHHHHHHHHhCCeEEEEeCCCCCccccchhHHHHHCC-eEEEECCCChHHHHHHHHHHHHHHhccCCCccch
Q 019910 148 GGCQSAHATAVAVSCAERGLKSHLLLRGEQPQILTGYNLISTIYG-KVTYVPRTHYAHRIEMLKSYANLVAGNNGDVVWC 226 (334)
Q Consensus 148 Gg~qsNh~~AvAaaaa~~Gl~~~ivv~~~~p~~~~gn~~~~~~~G-~V~~v~~~~y~~~~~~~~~~a~~~~~~~g~~~w~ 226 (334)
++||||+|+|++|+.+|++|+||||...++. +...++.|| +|+.++. .|++..+.+.+ ++.++
T Consensus 123 --SsGN~g~alA~~a~~~G~~~~Ivvp~~~~~~---k~~~i~~~GA~Vi~v~~-~~~~~~~~a~~----~~~~~------ 186 (399)
T PRK08206 123 --TDGNHGRGVAWAAQQLGQKAVIYMPKGSSEE---RVDAIRALGAECIITDG-NYDDSVRLAAQ----EAQEN------ 186 (399)
T ss_pred --CCcHHHHHHHHHHHHcCCCEEEEECCCCCHH---HHHHHHHcCCEEEEeCC-CHHHHHHHHHH----HHHHc------
Confidence 4799999999999999999999999988754 456789999 9999985 57755443322 11111
Q ss_pred hhhhhhhHhhhhhhcccccchhhhhccccccCcEEEEcC----CCcc--hhHHHHHHHHHHHHHHhhhcCCCCCCEEEEc
Q 019910 227 NEIFEASLTAQKSRASCLGQMDAHKGIDNCRKKVLIVNE----GAGD--AVALLGVFRLLQYLSQDHLLGRKRAIKFVVD 300 (334)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~Ipe----Ggs~--p~a~~G~~~la~EI~eq~~~g~~~~D~Vvvp 300 (334)
..|+++. +..| +....||.+++.||.+|+......||+||||
T Consensus 187 --------------------------------g~~~v~~~~~~~~~~~~~~~~~G~~t~a~EI~eQl~~~~~~pD~vvvp 234 (399)
T PRK08206 187 --------------------------------GWVVVQDTAWEGYEEIPTWIMQGYGTMADEAVEQLKEMGVPPTHVFLQ 234 (399)
T ss_pred --------------------------------CCEEecCccccCcccccHHHHHHhHHHHHHHHHHHHhcCCCCCEEEEc
Confidence 1233321 3333 6778999999999999984111259999999
Q ss_pred CCchhHHHHHHHHHHHcC--CCCeEEEEEeccCC
Q 019910 301 AGTGTTAVGLGLGAICLG--CVPLFNTLLVKLSR 332 (334)
Q Consensus 301 ~GtGgt~aGl~~g~k~lg--~~~~VigV~~~gs~ 332 (334)
+|||||++|++.+++++. +.++|++|++.|+.
T Consensus 235 vG~GG~~aGi~~~~k~~~~~~~~kii~Vep~gs~ 268 (399)
T PRK08206 235 AGVGSLAGAVLGYFAEVYGEQRPHFVVVEPDQAD 268 (399)
T ss_pred CCccHHHHHHHHHHHHHcCCCCCEEEEECCCCCc
Confidence 999999999999999984 47999999998875
No 69
>cd06446 Trp-synth_B Tryptophan synthase-beta: Trptophan synthase is a bifunctional enzyme that catalyses the last two steps in the biosynthesis of L-tryptophan via its alpha and beta reactions. In the alpha reaction, indole 3-glycerol phosphate is cleaved reversibly to glyceraldehyde 3-phosphate and indole at the active site of the alpha subunit. In the beta reaction, indole undergoes a PLP-dependent reaction with L-serine to form L-tryptophan at the active site of the beta subunit. Members of this CD, Trp-synth_B, are found in all three major phylogenetic divisions.
Probab=99.97 E-value=4.9e-29 Score=245.22 Aligned_cols=197 Identities=14% Similarity=0.045 Sum_probs=147.7
Q ss_pred CCcCCCCCccccCC-CCeEEEEeCCCCCCCChhHHHHHHHhhhHHHHhcCCCEEEEeCCccchHHHHHHHHHHHhCCeEE
Q 019910 92 TCPFLGDDMIMRDE-DRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIVTDLVTCGGCQSAHATAVAVSCAERGLKSH 170 (334)
Q Consensus 92 ~Tp~l~~~~l~~~~-g~~lyvKrDDl~~p~~gGnK~RkL~~lL~~a~~~g~~~VVt~Gg~qsNh~~AvAaaaa~~Gl~~~ 170 (334)
-||++..+.+++.. +.+||+|+|++| | +||||+|.+...+..+.+.|.+++|+.+| +|||++|+|++|+++|++|+
T Consensus 34 ~TPL~~l~~l~~~~g~~~l~~K~E~~n-p-tgS~K~R~a~~~~~~a~~~g~~~vv~~~s-sGN~g~alA~~a~~~G~~~~ 110 (365)
T cd06446 34 PTPLYRAKRLSEYLGGAKIYLKREDLN-H-TGAHKINNALGQALLAKRMGKKRVIAETG-AGQHGVATATACALFGLECE 110 (365)
T ss_pred CCCceehHHHHHhhCCceEEEEeccCC-C-ccchhHHHHHHHHHHHHHcCCCeEEEecC-chHHHHHHHHHHHHhCCCeE
Confidence 47888877777766 589999999995 6 58999999988888889999999997433 49999999999999999999
Q ss_pred EEeCCCCCccccchhHHHHHCC-eEEEECCC--ChHHHHHHHHHHHHHHhccCCCccchhhhhhhhHhhhhhhcccccch
Q 019910 171 LLLRGEQPQILTGYNLISTIYG-KVTYVPRT--HYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASLTAQKSRASCLGQM 247 (334)
Q Consensus 171 ivv~~~~p~~~~gn~~~~~~~G-~V~~v~~~--~y~~~~~~~~~~a~~~~~~~g~~~w~~~~~~~~~~~~~~~~~~~~~~ 247 (334)
||||...+....+|..+++.|| +|+.++.. .|++..... ++.
T Consensus 111 ivvp~~~~~~~~~~~~~~~~~GAeV~~~~~~~~~~~~~~~~a---~~~-------------------------------- 155 (365)
T cd06446 111 IYMGAVDVERQPLNVFRMELLGAEVVPVPSGSGTLKDAISEA---IRD-------------------------------- 155 (365)
T ss_pred EEEcCCccccccchHHHHHHCCCEEEEeCCCCCcHHHHHHHH---HHH--------------------------------
Confidence 9999865433346788999999 99999853 233321111 100
Q ss_pred hhhhcccccc-CcEEEEcCCC--cch---hHHHHHHHHHHHHHHhhhc-CCCCCCEEEEcCCchhHHHHHHHHHHHcCCC
Q 019910 248 DAHKGIDNCR-KKVLIVNEGA--GDA---VALLGVFRLLQYLSQDHLL-GRKRAIKFVVDAGTGTTAVGLGLGAICLGCV 320 (334)
Q Consensus 248 ~~~~~l~~~~-~~~y~IpeGg--s~p---~a~~G~~~la~EI~eq~~~-g~~~~D~Vvvp~GtGgt~aGl~~g~k~lg~~ 320 (334)
..... +.+|++ .+. .+| .-..|+.++++||++|+.. +...||+||+|+|||||++|++++++. .+.
T Consensus 156 -----~~~~~~~~~y~~-~~~~~~~~~~~~~~ag~~t~~~EI~~Q~~~~~~~~~D~vv~~vG~GGt~~Gi~~g~~~-~~~ 228 (365)
T cd06446 156 -----WVTNVEDTHYLL-GSVVGPHPYPNMVRDFQSVIGEEAKKQILEKEGELPDVVIACVGGGSNAAGLFYPFIN-DKD 228 (365)
T ss_pred -----HHhccCCceEec-ccccCCCCchHHHHHhhhHHHHHHHHHHHHhcCCCCCEEEEecCccHHHHHHHHHHHh-CCC
Confidence 01111 234543 221 122 2367788999999999842 113589999999999999999999987 569
Q ss_pred CeEEEEEeccCCC
Q 019910 321 PLFNTLLVKLSRG 333 (334)
Q Consensus 321 ~~VigV~~~gs~~ 333 (334)
++||||++.++..
T Consensus 229 ~~vigVep~gs~~ 241 (365)
T cd06446 229 VKLIGVEAGGCGL 241 (365)
T ss_pred ceEEEEcCCCCcc
Confidence 9999999998754
No 70
>KOG1251 consensus Serine racemase [Signal transduction mechanisms; Amino acid transport and metabolism]
Probab=99.96 E-value=1.2e-29 Score=234.03 Aligned_cols=187 Identities=16% Similarity=0.205 Sum_probs=157.2
Q ss_pred CCCcCCCCCccccCCCCeEEEEeCCCCCCCChhHHHHHHHhhhHHHH-hcCCCEEEEeCCccchHHHHHHHHHHHhCCeE
Q 019910 91 NTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLE-DHIVTDLVTCGGCQSAHATAVAVSCAERGLKS 169 (334)
Q Consensus 91 ~~Tp~l~~~~l~~~~g~~lyvKrDDl~~p~~gGnK~RkL~~lL~~a~-~~g~~~VVt~Gg~qsNh~~AvAaaaa~~Gl~~ 169 (334)
+.||+|.+.++++..|.++|+|.|.+|. +|+||.|++.+.+..+. ++..++|||.+| |||++|+|++|+..|++|
T Consensus 24 hkTpVlTS~~ln~~~g~~vfFKcE~fQK--tGaFKfRGAlNav~~l~~ek~~kgvithSS--GNHaqAlalaAk~~giPa 99 (323)
T KOG1251|consen 24 HKTPVLTSENLNEKVGRHVFFKCENFQK--TGAFKFRGALNAVSSLKAEKRAKGVITHSS--GNHAQALALAAKILGIPA 99 (323)
T ss_pred ccCceechhhHHHHhhhheEeehhhhhh--ccceehhhhHHHHHHhhHhhhcCceEeecC--CcHHHHHHHHHHhcCCCe
Confidence 5699999999999999999999999986 58999999988777765 788899999975 999999999999999999
Q ss_pred EEEeCCCCCccccchhHHHHHCC-eEEEECCCChHHHHHHHHHHHHHHhccCCCccchhhhhhhhHhhhhhhcccccchh
Q 019910 170 HLLLRGEQPQILTGYNLISTIYG-KVTYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASLTAQKSRASCLGQMD 248 (334)
Q Consensus 170 ~ivv~~~~p~~~~gn~~~~~~~G-~V~~v~~~~y~~~~~~~~~~a~~~~~~~g~~~w~~~~~~~~~~~~~~~~~~~~~~~ 248 (334)
.|+||.++|.. ++..++.|| +|+++++. -++|+.+++. +.++.|.+
T Consensus 100 ~IVvP~~AP~~---Kv~a~~~Yga~ii~~e~~-~~sRE~va~~----ltee~g~~------------------------- 146 (323)
T KOG1251|consen 100 TIVVPKDAPIC---KVAATRGYGANIIFCEPT-VESRESVAKD----LTEETGYY------------------------- 146 (323)
T ss_pred EEEecCCChHH---HHHHHHhcCceEEEecCc-cchHHHHHHH----HHHhcCcE-------------------------
Confidence 99999999875 567899999 99999975 3677777653 33333321
Q ss_pred hhhccccccCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhcCCCCCCEEEEcCCchhHHHHHHHHHHHcCCCCeEEEEEe
Q 019910 249 AHKGIDNCRKKVLIVNEGAGDAVALLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGLGAICLGCVPLFNTLLV 328 (334)
Q Consensus 249 ~~~~l~~~~~~~y~IpeGgs~p~a~~G~~~la~EI~eq~~~g~~~~D~Vvvp~GtGgt~aGl~~g~k~lg~~~~VigV~~ 328 (334)
+.+++++|-+|..+ | +.|.||.||. | ..|.+|||+|+||+++|++.+.+.+.|.++|++|+|
T Consensus 147 ----~i~Py~~p~vIaGq--------g--TiA~ElleqV--g--~iDalfvpvgGGGllSgvAlaa~~l~P~i~vy~veP 208 (323)
T KOG1251|consen 147 ----LIHPYNHPSVIAGQ--------G--TIALELLEQV--G--EIDALFVPVGGGGLLSGVALAAKSLKPSIEVYAVEP 208 (323)
T ss_pred ----EeCCCCCcceeecc--------c--hHHHHHHHhh--C--ccceEEEeecCcchhhHHHHHHhccCCCcEEEEecC
Confidence 44566666666443 3 3999999998 3 689999999999999999999999999999999999
Q ss_pred ccCC
Q 019910 329 KLSR 332 (334)
Q Consensus 329 ~gs~ 332 (334)
++-.
T Consensus 209 ~~a~ 212 (323)
T KOG1251|consen 209 EAAD 212 (323)
T ss_pred cccc
Confidence 6543
No 71
>TIGR01747 diampropi_NH3ly diaminopropionate ammonia-lyase family. This small subfamily includes diaminopropionate ammonia-lyase from Salmonella typhimurium and a small number of close homologs, about 50 % identical in sequence. The enzyme is a pyridoxal phosphate-binding homodimer homologous to threonine dehydratase (threonine deaminase).
Probab=99.96 E-value=1.2e-28 Score=243.59 Aligned_cols=193 Identities=15% Similarity=0.095 Sum_probs=150.1
Q ss_pred CCcCCCCCccccCCC-CeEEEEeCCCCCCCChhHHHHHHHhhhHHHHh-----------------------cCCCEEEEe
Q 019910 92 TCPFLGDDMIMRDED-RCFYVVRDDLLHPLVNGNKARKMDALLPLLED-----------------------HIVTDLVTC 147 (334)
Q Consensus 92 ~Tp~l~~~~l~~~~g-~~lyvKrDDl~~p~~gGnK~RkL~~lL~~a~~-----------------------~g~~~VVt~ 147 (334)
-||++..+.|++..| .+||+|+|++++| +|+||+|...+.+..+.. .+.++||+.
T Consensus 22 ~TPL~~~~~l~~~~g~~~v~~K~E~~~~~-tgSFK~RG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~a 100 (376)
T TIGR01747 22 PTPLCALDHLANLLGLKKILVKDESKRFG-LNAFKMLGGSYAIAQYLAEKLHLDIETLSFEHLKNDAIGEKMGQATFATA 100 (376)
T ss_pred CCCCcchHHHHHHhCCCcEEEeeCCCCCC-CCChHHHHHHHHHHHHHHHHhCCCcccCCHHHHhhhHHHhhcCCCEEEEE
Confidence 489999999999899 5999999999766 789999999888776533 246788865
Q ss_pred CCccchHHHHHHHHHHHhCCeEEEEeCCCCCccccchhHHHHHCC-eEEEECCCChHHHHHHHHHHHHHHhccCCCccch
Q 019910 148 GGCQSAHATAVAVSCAERGLKSHLLLRGEQPQILTGYNLISTIYG-KVTYVPRTHYAHRIEMLKSYANLVAGNNGDVVWC 226 (334)
Q Consensus 148 Gg~qsNh~~AvAaaaa~~Gl~~~ivv~~~~p~~~~gn~~~~~~~G-~V~~v~~~~y~~~~~~~~~~a~~~~~~~g~~~w~ 226 (334)
+ +||||+|+|++|+.+|++|+||||.+.|+. +...++.|| +|+.++. .|++..+.+.+ ++.+.|
T Consensus 101 S--sGN~g~a~A~~Aa~~G~~~~I~vP~~~~~~---k~~~i~~~GAeVi~v~~-~~~~a~~~a~~----~~~~~g----- 165 (376)
T TIGR01747 101 T--DGNHGRGVAWAAQQLGQKAVVYMPKGSAQE---RVENILNLGAECTITDM-NYDDTVRLAMQ----MAQQHG----- 165 (376)
T ss_pred C--ccHHHHHHHHHHHHcCCCEEEEECCCCCHH---HHHHHHhCCCEEEEECC-CHHHHHHHHHH----HHHhcC-----
Confidence 4 599999999999999999999999988754 567889999 9999985 57765444332 212221
Q ss_pred hhhhhhhHhhhhhhcccccchhhhhccccccCcEEEEcC----CCc--chhHHHHHHHHHHHHHHhhh-cCCCCCCEEEE
Q 019910 227 NEIFEASLTAQKSRASCLGQMDAHKGIDNCRKKVLIVNE----GAG--DAVALLGVFRLLQYLSQDHL-LGRKRAIKFVV 299 (334)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~Ipe----Ggs--~p~a~~G~~~la~EI~eq~~-~g~~~~D~Vvv 299 (334)
.|+++. +.. +|.-..||.+++.||.+|+. .+|..||+||+
T Consensus 166 ---------------------------------~~~~~~~~~~~~~~~~~~ii~G~~Tia~Ei~eQl~~~~~~~pD~vvv 212 (376)
T TIGR01747 166 ---------------------------------WVVVQDTAWEGYEKIPTWIMQGYATLADEAVEQLREMGSVTPTHVLL 212 (376)
T ss_pred ---------------------------------cEEeccccccccccCCchHHHHHHHHHHHHHHHhhccCCCCCCEEEE
Confidence 222321 222 25568999999999999983 22447999999
Q ss_pred cCCchhHHHHHHHHHHHcCC-C-CeEEEEEeccCCC
Q 019910 300 DAGTGTTAVGLGLGAICLGC-V-PLFNTLLVKLSRG 333 (334)
Q Consensus 300 p~GtGgt~aGl~~g~k~lg~-~-~~VigV~~~gs~~ 333 (334)
|+|+||+++|++.+++.+.. . ++|++|++.++..
T Consensus 213 pvG~GGl~~Gi~~~~~~~~~~~~p~vi~Vep~ga~~ 248 (376)
T TIGR01747 213 QAGVGSMAGGVLGYFVDVYSENNPHSIVVEPDKADC 248 (376)
T ss_pred CCchhHHHHHHHHHHHHhcCCCCCEEEEEeeCCCCH
Confidence 99999999999999977644 3 6999999988764
No 72
>TIGR03528 2_3_DAP_am_ly diaminopropionate ammonia-lyase. Members of this protein family are the homodimeric, pyridoxal phosphate enzyme diaminopropionate ammonia-lyase, which adds water to remove two amino groups, leaving pyruvate.
Probab=99.96 E-value=2.8e-28 Score=242.46 Aligned_cols=191 Identities=17% Similarity=0.113 Sum_probs=144.8
Q ss_pred CcCCCCCccccCCC-CeEEEEeCCCCCCCChhHHHHHHHhhhHHH--HhcC---------------------CCEEEEeC
Q 019910 93 CPFLGDDMIMRDED-RCFYVVRDDLLHPLVNGNKARKMDALLPLL--EDHI---------------------VTDLVTCG 148 (334)
Q Consensus 93 Tp~l~~~~l~~~~g-~~lyvKrDDl~~p~~gGnK~RkL~~lL~~a--~~~g---------------------~~~VVt~G 148 (334)
||++.++.|++..| .+||+|+|++++| +|+||+|+..+.+..+ .+.| ..+||+++
T Consensus 42 TPL~~~~~L~~~~g~~~v~lK~E~~q~~-tGSFK~RGa~~~v~~l~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~vv~aS 120 (396)
T TIGR03528 42 TPLAELDNLAKHLGVGSILVKDESYRFG-LNAFKVLGGSYAIGKYLAEKLGKDISELSFEKLKSNEIREKLGDITFVTAT 120 (396)
T ss_pred CCCcchHHHHHHhCCCcEEEeeCCCCCC-cCChHHHHHHHHHHHHHHHHhCCCcccccHHHhhhHHHHhhccCcEEEEEC
Confidence 88888888888888 6999999999877 7999999988877653 2222 33788654
Q ss_pred CccchHHHHHHHHHHHhCCeEEEEeCCCCCccccchhHHHHHCC-eEEEECCCChHHHHHHHHHHHHHHhccCCCccchh
Q 019910 149 GCQSAHATAVAVSCAERGLKSHLLLRGEQPQILTGYNLISTIYG-KVTYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCN 227 (334)
Q Consensus 149 g~qsNh~~AvAaaaa~~Gl~~~ivv~~~~p~~~~gn~~~~~~~G-~V~~v~~~~y~~~~~~~~~~a~~~~~~~g~~~w~~ 227 (334)
+||||+|+|++|+++|++|+||||.+.|.. +...++.|| +|+.++. .|++..+.+. +++.++|
T Consensus 121 --sGN~g~alA~~aa~~Gi~~~IvvP~~~~~~---K~~~ir~~GAeVi~~~~-~~~~a~~~a~----~~a~~~g------ 184 (396)
T TIGR03528 121 --DGNHGRGVAWAANQLGQKSVVYMPKGSAQI---RLENIRAEGAECTITDL-NYDDAVRLAW----KMAQENG------ 184 (396)
T ss_pred --ccHHHHHHHHHHHHcCCCEEEEEeCCCcHH---HHHHHHhcCCEEEEECC-CHHHHHHHHH----HHHHhcC------
Confidence 599999999999999999999999988754 566889999 9999985 4775444332 2222221
Q ss_pred hhhhhhHhhhhhhcccccchhhhhccccccCcEEEEc----CCCcc--hhHHHHHHHHHHHHHHhhh-cCCCCCCEEEEc
Q 019910 228 EIFEASLTAQKSRASCLGQMDAHKGIDNCRKKVLIVN----EGAGD--AVALLGVFRLLQYLSQDHL-LGRKRAIKFVVD 300 (334)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~Ip----eGgs~--p~a~~G~~~la~EI~eq~~-~g~~~~D~Vvvp 300 (334)
.|++. .|..+ +....||.+++.||.+|+. .++..||+||+|
T Consensus 185 --------------------------------~~~v~~~~~~~~~~~~~~~i~G~~Tig~EI~eQl~~~~~~~pD~vvvp 232 (396)
T TIGR03528 185 --------------------------------WVMVQDTAWEGYEKIPTWIMQGYGTLALEALEQLKEQGVEKPTHVFLQ 232 (396)
T ss_pred --------------------------------cEeeccccccccccCchHHHHHHhHHHHHHHHHHhhcCCCCCCEEEEc
Confidence 22222 12223 5567899999999999983 223469999999
Q ss_pred CCchhHHHHHHHHH-HHcCCCC-eEEEEEeccCC
Q 019910 301 AGTGTTAVGLGLGA-ICLGCVP-LFNTLLVKLSR 332 (334)
Q Consensus 301 ~GtGgt~aGl~~g~-k~lg~~~-~VigV~~~gs~ 332 (334)
+|+||++.|++.++ +.+++.. +|+||++.++.
T Consensus 233 vG~Ggl~~gi~~~~~~~~~~~~p~vi~Vep~~a~ 266 (396)
T TIGR03528 233 AGVGSFAGAVQGYFASAYGEERPITVIVEPDAAD 266 (396)
T ss_pred CCcchHHHHHHHHHHHhcCCCCCEEEEEccCCCc
Confidence 99999999999988 4455554 99999998764
No 73
>PRK08813 threonine dehydratase; Provisional
Probab=99.96 E-value=3.3e-28 Score=238.17 Aligned_cols=176 Identities=15% Similarity=0.084 Sum_probs=141.4
Q ss_pred CCcCCCCCccccCCCCeEEEEeCCCCCCCChhHHHHHHHhhhHHHHhcCCC-EEEEeCCccchHHHHHHHHHHHhCCeEE
Q 019910 92 TCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIVT-DLVTCGGCQSAHATAVAVSCAERGLKSH 170 (334)
Q Consensus 92 ~Tp~l~~~~l~~~~g~~lyvKrDDl~~p~~gGnK~RkL~~lL~~a~~~g~~-~VVt~Gg~qsNh~~AvAaaaa~~Gl~~~ 170 (334)
-||++.++.+ +||+|+|++| | +||||+|.+.+++..+.+.+.. +||+++ +||||+|+|++|+++|++|+
T Consensus 39 ~TPL~~~~~l------~v~lK~E~~n-p-tGSfK~RgA~~~l~~a~~~~~~~~VV~aS--sGN~G~alA~aa~~~Gi~~~ 108 (349)
T PRK08813 39 PTPLHYAERF------GVWLKLENLQ-R-TGSYKVRGALNALLAGLERGDERPVICAS--AGNHAQGVAWSAYRLGVQAI 108 (349)
T ss_pred CCCeEECCCC------cEEEEecCCC-C-cCCCHHHHHHHHHHHHHHcCCCCeEEEEC--CCHHHHHHHHHHHHcCCCEE
Confidence 3666665443 4999999995 7 6999999999999998888864 788654 49999999999999999999
Q ss_pred EEeCCCCCccccchhHHHHHCC-eEEEECCCChHHHHHHHHHHHHHHhccCCCccchhhhhhhhHhhhhhhcccccchhh
Q 019910 171 LLLRGEQPQILTGYNLISTIYG-KVTYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASLTAQKSRASCLGQMDA 249 (334)
Q Consensus 171 ivv~~~~p~~~~gn~~~~~~~G-~V~~v~~~~y~~~~~~~~~~a~~~~~~~g~~~w~~~~~~~~~~~~~~~~~~~~~~~~ 249 (334)
||||...|+. ++..++.|| +|+.++. .|++..+..++++ .
T Consensus 109 IvvP~~~~~~---K~~~i~~~GAeVv~~g~-~~~~a~~~a~~la----~------------------------------- 149 (349)
T PRK08813 109 TVMPHGAPQT---KIAGVAHWGATVRQHGN-SYDEAYAFARELA----D------------------------------- 149 (349)
T ss_pred EEEcCCCCHH---HHHHHHHcCCEEEEECC-CHHHHHHHHHHHH----H-------------------------------
Confidence 9999988764 567889999 9999975 5776544432211 1
Q ss_pred hhccccccCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhcCCCCCCEEEEcCCchhHHHHHHHHHHHcCCCCeEEEEEec
Q 019910 250 HKGIDNCRKKVLIVNEGAGDAVALLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGLGAICLGCVPLFNTLLVK 329 (334)
Q Consensus 250 ~~~l~~~~~~~y~IpeGgs~p~a~~G~~~la~EI~eq~~~g~~~~D~Vvvp~GtGgt~aGl~~g~k~lg~~~~VigV~~~ 329 (334)
.. ..|+++ ...||....|+.+++.||.+|. ||+||+|+|+||+++|+++++|. +.++||||++.
T Consensus 150 ------~~-g~~~v~-~~~np~~i~G~~Tig~EI~e~~------pD~VvvpvGgGGliaGia~~lk~--~~~rVigVqpe 213 (349)
T PRK08813 150 ------QN-GYRFLS-AFDDPDVIAGQGTVGIELAAHA------PDVVIVPIGGGGLASGVALALKS--QGVRVVGAQVE 213 (349)
T ss_pred ------hc-CCEEcC-ccCChHHHHHHHHHHHHHHcCC------CCEEEEEeCccHHHHHHHHHHhc--CCCEEEEEEEC
Confidence 11 234443 3567888999999999999863 79999999999999999999996 56999999998
Q ss_pred cCC
Q 019910 330 LSR 332 (334)
Q Consensus 330 gs~ 332 (334)
|+.
T Consensus 214 ga~ 216 (349)
T PRK08813 214 GVD 216 (349)
T ss_pred CCc
Confidence 864
No 74
>PRK12391 tryptophan synthase subunit beta; Reviewed
Probab=99.96 E-value=4.2e-28 Score=243.09 Aligned_cols=249 Identities=14% Similarity=0.069 Sum_probs=167.4
Q ss_pred HHHHHHhhhhhhccCCCCceeecccccccccCCCCCCCcccccCCCCcCCCCCccccCCC--CeEEEEeCCCCCCCChhH
Q 019910 47 ELLSRLLDRKWALTSPDSKIHQIKLFTTTEKHGGGPLGGISFLNNTCPFLGDDMIMRDED--RCFYVVRDDLLHPLVNGN 124 (334)
Q Consensus 47 ~~~~~~~~~~~~~~~p~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~Tp~l~~~~l~~~~g--~~lyvKrDDl~~p~~gGn 124 (334)
+.+..+.-.+.++.. .+.+||+++- .+...+.-.-+-||+++.++|++..| .+||+|+|++| | +|||
T Consensus 41 ~~~~~~~~~~~~~~~-~~~~~~~~i~--------~~v~~~~~~~~~TPL~~~~~L~~~lg~~~~Iy~K~E~~n-P-tGS~ 109 (427)
T PRK12391 41 EDLAPIFPMELIEQE-VSTERYIDIP--------EEVREIYRLWRPTPLIRARRLEKALGTPAKIYYKYEGVS-P-TGSH 109 (427)
T ss_pred HHhhhcChHHHhhcc-CCcccccCCh--------HHHHHHHcccCCCCeeEchhhHhhhCCCceEEEEEcCCC-C-CCCh
Confidence 445656555555444 4467775332 21222222334689999888888776 69999999995 7 6899
Q ss_pred HHHHHHhhhHHHHhcCCCEEEEeCCccchHHHHHHHHHHHhCCeEEEEeCCCCCccccchhHHHHHCC-eEEEECCCChH
Q 019910 125 KARKMDALLPLLEDHIVTDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGEQPQILTGYNLISTIYG-KVTYVPRTHYA 203 (334)
Q Consensus 125 K~RkL~~lL~~a~~~g~~~VVt~Gg~qsNh~~AvAaaaa~~Gl~~~ivv~~~~p~~~~gn~~~~~~~G-~V~~v~~~~y~ 203 (334)
|+|.+...+..+++.|.++++|..| .||||.|+|++|+.+|++|+|||+...+..+..+..+++.|| +|+.++.. ++
T Consensus 110 K~R~A~~~a~~a~~~G~~~~vtetg-sGN~G~alA~aaa~~Gl~~~V~mp~~s~~~k~~r~~~mr~~GA~Vi~~~~~-~~ 187 (427)
T PRK12391 110 KPNTAVAQAYYNKKEGIKRLTTETG-AGQWGSALALACALFGLECTVFMVRVSYEQKPYRRSLMETYGAEVIPSPSD-LT 187 (427)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEccC-chHHHHHHHHHHHHcCCcEEEEEecCCcccCHHHHHHHHHCCCEEEEECCc-hh
Confidence 9999988888889999999997543 499999999999999999999999744333334567999999 99999853 44
Q ss_pred HHHHHHHHHHHHHhccCCCccchhhhhhhhHhhhhhhcccccchhhhhccccccCcEEEEcCCCcchhHHHHHHHHHHHH
Q 019910 204 HRIEMLKSYANLVAGNNGDVVWCNEIFEASLTAQKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVALLGVFRLLQYL 283 (334)
Q Consensus 204 ~~~~~~~~~a~~~~~~~g~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~IpeGgs~p~a~~G~~~la~EI 283 (334)
+..+.+ ++.+.+..++...-+. ++.+......+..|+++.. . ..-..|+.++++||
T Consensus 188 ~~~~~~------~~~~~~~~gsl~~ai~----------------~A~e~a~~~~~~~y~~~s~-~-~~~~~~~~~ig~Ei 243 (427)
T PRK12391 188 EAGRKI------LAEDPDHPGSLGIAIS----------------EAVEDAAKRPDTKYALGSV-L-NHVLLHQTVIGLEA 243 (427)
T ss_pred hhhhhh------hhcCccccccHHHHHH----------------HHHHHHHhCCCcEEEcCCC-C-cHHHhhHHHHHHHH
Confidence 322211 1111111111000000 0111111222345654332 2 23456788899999
Q ss_pred HHhhhcCCCCCCEEEEcCCchhHHHHHHHHH---HHcC-CCCeEEEEEeccCC
Q 019910 284 SQDHLLGRKRAIKFVVDAGTGTTAVGLGLGA---ICLG-CVPLFNTLLVKLSR 332 (334)
Q Consensus 284 ~eq~~~g~~~~D~Vvvp~GtGgt~aGl~~g~---k~lg-~~~~VigV~~~gs~ 332 (334)
.+|+...+..||+||+|+|+||+++|++.++ +..| +.+|||||++.+++
T Consensus 244 ~~Ql~~~g~~pD~Vv~~vG~Gg~~aGi~~~f~~~~~~g~~~~riiaVEp~~~~ 296 (427)
T PRK12391 244 KKQLELAGEYPDVVIGCVGGGSNFAGLAFPFLGDKLEGKKDTRFIAVEPAACP 296 (427)
T ss_pred HHHHHhcCCCCCEEEEecCchHHHHHHHHHHHHHHhcCCCCceEEEEeeccch
Confidence 9998532246999999999999999999987 4457 89999999998875
No 75
>TIGR02035 D_Ser_am_lyase D-serine ammonia-lyase. This family consists of D-serine ammonia-lyase (EC 4.3.1.18), a pyridoxal-phosphate enzyme that converts D-serine to pyruvate and NH3. This enzyme is also called D-serine dehydratase and D-serine deaminase and was previously designated EC 4.2.1.14. It is homologous to an enzyme that acts on threonine and may itself act weakly on threonine.
Probab=99.96 E-value=7.6e-28 Score=241.37 Aligned_cols=197 Identities=13% Similarity=0.046 Sum_probs=151.6
Q ss_pred cccCCCCcCCCCCccccC--------CCCeEEEEeCCCCCCCChhHHHHHHHhhhHH-----HHhcCC------------
Q 019910 87 SFLNNTCPFLGDDMIMRD--------EDRCFYVVRDDLLHPLVNGNKARKMDALLPL-----LEDHIV------------ 141 (334)
Q Consensus 87 ~~~~~~Tp~l~~~~l~~~--------~g~~lyvKrDDl~~p~~gGnK~RkL~~lL~~-----a~~~g~------------ 141 (334)
+....-||++..+.+++. .+.+||+|.|.+| |.+||||+|...+.+.. +.+.|.
T Consensus 65 ~~~~~~TPL~~~~~ls~~~~~~~~~~~~~~v~lKlE~~n-P~tGSfKdRGA~~~i~~~~~~~A~~~G~l~~~~~~~~l~e 143 (431)
T TIGR02035 65 TGGIIESPLVEIFNMQKELEKKYQQEIPGRLLLKMDSHL-PISGSIKARGGIYEVLKHAEELALEAGLLKLDDDYSILAE 143 (431)
T ss_pred cCCccCCCccchHHHHHHhhhcccCCcCceEEEEecccC-CccCCcHHHHHHHHHHHhhHHHHHHcCCCCcCcchhhhcc
Confidence 556778999999988773 3579999999995 75699999999887753 556665
Q ss_pred ---------CEEEEeCCccchHHHHHHHHHHHhCCeEEEEeCCCCCccccchhHHHHHCC-eEEEECCCChHHHHHHHHH
Q 019910 142 ---------TDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGEQPQILTGYNLISTIYG-KVTYVPRTHYAHRIEMLKS 211 (334)
Q Consensus 142 ---------~~VVt~Gg~qsNh~~AvAaaaa~~Gl~~~ivv~~~~p~~~~gn~~~~~~~G-~V~~v~~~~y~~~~~~~~~ 211 (334)
.+||+++ +||||+++|++|+.+|++|+||||.+.|.. +...++.|| +|+.++. +|++..+..++
T Consensus 144 ~~~~~~~~~~~Vv~aS--sGN~G~slA~~Aa~lG~~~~IvmP~~a~~~---K~~~ir~~GAeVv~~~~-~~~~a~~~A~~ 217 (431)
T TIGR02035 144 KKFKDFFSRYSIAVGS--TGNLGLSIGIISAALGFQVTVHMSADAKQW---KKDKLRSKGVTVVEYES-DYGVAVEEGRK 217 (431)
T ss_pred hhhhhcccCceEEEEC--ccHHHHHHHHHHHHcCCCEEEEECCCCCHH---HHHHHHHcCCEEEEECC-CHHHHHHHHHH
Confidence 4677654 599999999999999999999999998765 567899999 9999985 58765443322
Q ss_pred HHHHHhccCCCccchhhhhhhhHhhhhhhcccccchhhhhccccccCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhc--
Q 019910 212 YANLVAGNNGDVVWCNEIFEASLTAQKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVALLGVFRLLQYLSQDHLL-- 289 (334)
Q Consensus 212 ~a~~~~~~~g~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~IpeGgs~p~a~~G~~~la~EI~eq~~~-- 289 (334)
++. ..+..|++. ....+.-..||.+++.||.+|+..
T Consensus 218 ----la~-------------------------------------~~~~~~~~d-~~n~~n~~aG~~T~g~EI~eQl~~~~ 255 (431)
T TIGR02035 218 ----NAD-------------------------------------ADPMCYFVD-DENSRNLFLGYAVAASRLKKQFDKKG 255 (431)
T ss_pred ----HHH-------------------------------------hcCCeEECC-CCCcccHHhhHHHHHHHHHHhhhccc
Confidence 111 112234332 221223357899999999999831
Q ss_pred ---CCCCCCEEEEcCCchhHHHHHHHHHHHc-CCCCeEEEEEeccCC
Q 019910 290 ---GRKRAIKFVVDAGTGTTAVGLGLGAICL-GCVPLFNTLLVKLSR 332 (334)
Q Consensus 290 ---g~~~~D~Vvvp~GtGgt~aGl~~g~k~l-g~~~~VigV~~~gs~ 332 (334)
..+.||+|++|+|+||+++|++.++|.+ +++++||+|++.+++
T Consensus 256 ~~~d~~~pd~V~vp~G~GGli~Gia~~lK~~~~~~vkvi~VEp~~s~ 302 (431)
T TIGR02035 256 IVVDKEHPLFVYLPCGVGGGPGGVAFGLKLAFGDNVHCFFAEPTHSP 302 (431)
T ss_pred cccccCCCCEEEEEeCcCHHHHHHHHHHHHhcCCCCEEEEEeeCCCH
Confidence 1125789999999999999999999997 899999999998875
No 76
>TIGR03844 cysteate_syn cysteate synthase. Members of this family are cysteate synthase, an enzyme of alternate pathway to sulfopyruvate, a precursor of coenzyme M.
Probab=99.96 E-value=6.6e-28 Score=239.90 Aligned_cols=207 Identities=13% Similarity=0.066 Sum_probs=161.9
Q ss_pred CCceeecccccccccCCCCCCCcccccCCCCcCCCCCccccCCCC-eEEE-------EeCCCCCCCChhHHHHHHHhhhH
Q 019910 63 DSKIHQIKLFTTTEKHGGGPLGGISFLNNTCPFLGDDMIMRDEDR-CFYV-------VRDDLLHPLVNGNKARKMDALLP 134 (334)
Q Consensus 63 ~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~Tp~l~~~~l~~~~g~-~lyv-------KrDDl~~p~~gGnK~RkL~~lL~ 134 (334)
...|||.++||. ..+ ....+.||++.++.|++..|. ++|+ |+|++| | +||||+|.+...+.
T Consensus 42 ~~~wry~~~lP~-----~~~----~~~~g~tpl~~~~~L~~~lG~~~v~~K~e~~~~K~E~~n-p-TGSFKdRga~~~i~ 110 (398)
T TIGR03844 42 PGIFRYYDWLPV-----TGH----LRTRGGPVTYKSEGLARELGLSDLYITFSGYWPERGAFM-R-TCSFKELEALPTMQ 110 (398)
T ss_pred CchhhhHhhCCC-----CCC----CCCCCCCceeehHHHHHHhCCCeEEEEecCcccchhccC-C-ccccHHHHHHHHHH
Confidence 468999999997 222 347778999999999999997 9999 556685 7 69999999999999
Q ss_pred HHHhcCCCEEEEeCCccchHHHHHHHHHHHhCCeEEEEeCCCCCccccchhHHHHHCC-eEEEECCCChHHHHHHHHHHH
Q 019910 135 LLEDHIVTDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGEQPQILTGYNLISTIYG-KVTYVPRTHYAHRIEMLKSYA 213 (334)
Q Consensus 135 ~a~~~g~~~VVt~Gg~qsNh~~AvAaaaa~~Gl~~~ivv~~~~p~~~~gn~~~~~~~G-~V~~v~~~~y~~~~~~~~~~a 213 (334)
.+.+.|.++||+.+ +|||++|+|++|+++|++|+||||...+.. .....+.|| +|+.++. .|++..+..++++
T Consensus 111 ~a~~~g~~~Vv~aS--sGN~g~alA~~aa~~Gi~~~I~vP~~~~~~---~~~~~~~~ga~vv~v~g-~~d~a~~~a~~~a 184 (398)
T TIGR03844 111 RLKERGGKTLVVAS--AGNTGRAFAEVSAITGQPVILVVPKSSADR---LWTTEPASSVLLVTVDG-DYTDAIALADRIA 184 (398)
T ss_pred HHHHcCCCEEEEEC--CCHHHHHHHHHHHHcCCcEEEEECCChHHH---HHHHhhCCcEEEEECCC-CHHHHHHHHHHHH
Confidence 99999999999765 499999999999999999999999875431 122347889 9999875 5876544433211
Q ss_pred HHHhccCCCccchhhhhhhhHhhhhhhcccccchhhhhccccccCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhcCCCC
Q 019910 214 NLVAGNNGDVVWCNEIFEASLTAQKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVALLGVFRLLQYLSQDHLLGRKR 293 (334)
Q Consensus 214 ~~~~~~~g~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~IpeGgs~p~a~~G~~~la~EI~eq~~~g~~~ 293 (334)
+ .. . ++.+.+..||....|++|+++||+||+ + ..
T Consensus 185 ----~-------------------------------------~~-g-~~~~~~~~~p~~ieG~~Ti~~Ei~eql--~-~~ 218 (398)
T TIGR03844 185 ----T-------------------------------------LP-G-FVPEGGARNVARRDGMGTVMLDAAVTI--G-SL 218 (398)
T ss_pred ----H-------------------------------------hC-C-ccccCCCCCHHHHhhHHHHHHHHHHHc--C-CC
Confidence 1 11 1 223344457889999999999999998 4 35
Q ss_pred CCEEEEcCCchhHHHHHHHHHHHcC-------CCCeEEEEEeccCC
Q 019910 294 AIKFVVDAGTGTTAVGLGLGAICLG-------CVPLFNTLLVKLSR 332 (334)
Q Consensus 294 ~D~Vvvp~GtGgt~aGl~~g~k~lg-------~~~~VigV~~~gs~ 332 (334)
||+||||+|+|+...|++++++++- .-.++++|++.|..
T Consensus 219 PD~VvvPvG~G~~~~~~~~~~~~l~~~g~i~~~~P~l~~VQ~eg~~ 264 (398)
T TIGR03844 219 PDHYFQAVGSGTGGIAAWEAAMRLIEDGRFGSKLPRLHLAQNLPFV 264 (398)
T ss_pred CCEEEEecCCCHHHHHHHHHHHHHHHcCCccCCCCCEEEEEcCCch
Confidence 8999999999999999999988841 23588999998753
No 77
>COG0133 TrpB Tryptophan synthase beta chain [Amino acid transport and metabolism]
Probab=99.95 E-value=7.1e-28 Score=229.11 Aligned_cols=253 Identities=15% Similarity=0.085 Sum_probs=187.0
Q ss_pred cCCCCcCCCCceeeeccChHHHHHHHhhh-hhhccCCCCceeecccccccccCCCCCCCcccccCCCCcCCCCCccccCC
Q 019910 27 ASGQLSNSPQGICNVRMSGEELLSRLLDR-KWALTSPDSKIHQIKLFTTTEKHGGGPLGGISFLNNTCPFLGDDMIMRDE 105 (334)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~p~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~Tp~l~~~~l~~~~ 105 (334)
+..+++|.|+|-|.||.+-+.+ ..|... +.....|+++-.+..+|.. +.++++|++|.+++|..+
T Consensus 4 ~~~g~fG~fGG~yVpE~Lmpal-~eLe~ay~~~~~D~~F~~el~~~l~~----Y~GRptpLy~a~~Lt~~~--------- 69 (396)
T COG0133 4 DEKGYFGEFGGQYVPETLMPAL-EELEKAYEKAKNDPEFQAELDYLLKD----YAGRPTPLYFAERLTEHL--------- 69 (396)
T ss_pred ccCCcccccCCEechHHHHHHH-HHHHHHHHHHhcCHHHHHHHHHHHHH----hCCCCChhHHHHHHHHhh---------
Confidence 4578999999999999998884 556654 7778888887777788886 899999999999887544
Q ss_pred CCeEEEEeCCCCCCCChhHHHHHHHhhhHHHHhcCCCEEEE-eCCccchHHHHHHHHHHHhCCeEEEEeCCCCCccccch
Q 019910 106 DRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIVTDLVT-CGGCQSAHATAVAVSCAERGLKSHLLLRGEQPQILTGY 184 (334)
Q Consensus 106 g~~lyvKrDDl~~p~~gGnK~RkL~~lL~~a~~~g~~~VVt-~Gg~qsNh~~AvAaaaa~~Gl~~~ivv~~~~p~~~~gn 184 (334)
|++||+|||||+|. |..|+-..-.-+-.|++.|.++||. +|+.| |+.|.|.+|+++|++|+|||-.+.-+.+..|
T Consensus 70 gakiyLKREDL~Ht--GAHKiNN~lGQ~LLAkrMGK~riIAETGAGQ--HGVAtAta~A~fgl~C~iYMGa~Dv~RQ~~N 145 (396)
T COG0133 70 GAKIYLKREDLNHT--GAHKINNALGQALLAKRMGKTRIIAETGAGQ--HGVATATAAALFGLECVIYMGAEDVERQALN 145 (396)
T ss_pred CceEEEehhhhccc--chhhHHHHHHHHHHHHHhCCceEEeecCCCc--ccHHHHHHHHHhCCceEEEecchhhhhcccc
Confidence 67899999999994 7666555443334478999999996 67645 9999999999999999999998776666779
Q ss_pred hHHHHHCC-eEEEECCCChHHHHHHHHHHHHHHhccCCCccchhhhhhhhHhhhhhhcccccchhhhhccccccCcEEEE
Q 019910 185 NLISTIYG-KVTYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASLTAQKSRASCLGQMDAHKGIDNCRKKVLIV 263 (334)
Q Consensus 185 ~~~~~~~G-~V~~v~~~~y~~~~~~~~~~a~~~~~~~g~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~I 263 (334)
+..|+++| +|+.|..++-...++..+.+. +|..++- +++.. .. ...+++||
T Consensus 146 VfRM~LlGA~V~pV~sGs~TLKDA~neAlR----------dWvtn~~---------~ThY~-----iG--sa~GPHPy-- 197 (396)
T COG0133 146 VFRMRLLGAEVVPVTSGSGTLKDAINEALR----------DWVTNVE---------DTHYL-----IG--SAAGPHPY-- 197 (396)
T ss_pred hhhhhhcCceEEEeccCCchHHHHHHHHHH----------HHHhccc---------cceEE-----Ee--eccCCCCc--
Confidence 99999999 999998776444444444322 6744321 11111 00 12355565
Q ss_pred cCCCcchhHHHHHHHHHHHHHHhhh-cCCCCCCEEEEcCCchhHHHHHHHHHHHcCCCCeEEEEEeccC
Q 019910 264 NEGAGDAVALLGVFRLLQYLSQDHL-LGRKRAIKFVVDAGTGTTAVGLGLGAICLGCVPLFNTLLVKLS 331 (334)
Q Consensus 264 peGgs~p~a~~G~~~la~EI~eq~~-~g~~~~D~Vvvp~GtGgt~aGl~~g~k~lg~~~~VigV~~~gs 331 (334)
|.-..+.+.+. +.|..+|.. ...+.||.||.|+|+|+.+.|++..|.. .+.++.|||++.|.
T Consensus 198 P~iVRdFQ~vI-----G~E~k~Qile~egrlPD~vvACVGGGSNAiG~F~~Fi~-d~~V~LiGvEaaG~ 260 (396)
T COG0133 198 PTIVRDFQSVI-----GEEAKAQILEKEGRLPDAVVACVGGGSNAIGIFHPFID-DESVRLIGVEAAGK 260 (396)
T ss_pred hHHHHHHHHHH-----hHHHHHHHHHHhCCCCCeEEEeccCCcchhhhcccccC-CCCceEEEeccCcC
Confidence 54444444544 456555532 1236799999999999999999988843 47899999999874
No 78
>COG0031 CysK Cysteine synthase [Amino acid transport and metabolism]
Probab=99.95 E-value=2.6e-26 Score=219.30 Aligned_cols=193 Identities=14% Similarity=0.062 Sum_probs=157.6
Q ss_pred CCCCcCCCCCccccCCCCeEEEEeCCCCCCCChhHHHHHHHhhhHHHHhcCC----CEEEEeCCccchHHHHHHHHHHHh
Q 019910 90 NNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIV----TDLVTCGGCQSAHATAVAVSCAER 165 (334)
Q Consensus 90 ~~~Tp~l~~~~l~~~~g~~lyvKrDDl~~p~~gGnK~RkL~~lL~~a~~~g~----~~VVt~Gg~qsNh~~AvAaaaa~~ 165 (334)
-+-||+++-.+++...+++||+|.|.+ || .||-|+|-..+++.+|++.|. ++||... +||.+.++|+.|+.+
T Consensus 9 iG~TPlvrL~~~~~~~~~~i~~KlE~~-NP-~gSvKDR~A~~mI~~Ae~~G~l~pG~tIVE~T--SGNTGI~LA~vaa~~ 84 (300)
T COG0031 9 IGNTPLVRLNRLSPGTGVEIYAKLESF-NP-GGSVKDRIALYMIEDAEKRGLLKPGGTIVEAT--SGNTGIALAMVAAAK 84 (300)
T ss_pred hCCCCcEeecccCCCCCceEEEEhhhc-CC-CCchhHHHHHHHHHHHHHcCCCCCCCEEEEcC--CChHHHHHHHHHHHc
Confidence 367899888877777789999999999 58 589999999999999999984 7788643 599999999999999
Q ss_pred CCeEEEEeCCCCCccccchhHHHHHCC-eEEEECC-CC-hHHHHHHHHHHHHHHhccCCCccchhhhhhhhHhhhhhhcc
Q 019910 166 GLKSHLLLRGEQPQILTGYNLISTIYG-KVTYVPR-TH-YAHRIEMLKSYANLVAGNNGDVVWCNEIFEASLTAQKSRAS 242 (334)
Q Consensus 166 Gl~~~ivv~~~~p~~~~gn~~~~~~~G-~V~~v~~-~~-y~~~~~~~~~~a~~~~~~~g~~~w~~~~~~~~~~~~~~~~~ 242 (334)
|++++++||+..+.. +..+++.|| +|+.++. .. +..+-+.
T Consensus 85 Gy~~iivmP~~~S~e---r~~~l~a~GAevi~t~~~~g~~~~a~~~---------------------------------- 127 (300)
T COG0031 85 GYRLIIVMPETMSQE---RRKLLRALGAEVILTPGAPGNMKGAIER---------------------------------- 127 (300)
T ss_pred CCcEEEEeCCCCCHH---HHHHHHHcCCEEEEcCCCCCchHHHHHH----------------------------------
Confidence 999999999988765 457899999 9999986 22 3221111
Q ss_pred cccchhhhhccccccCcEEEEcCCCcchhHHHHHH-HHHHHHHHhhhcCCCCCCEEEEcCCchhHHHHHHHHHHHcCCCC
Q 019910 243 CLGQMDAHKGIDNCRKKVLIVNEGAGDAVALLGVF-RLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGLGAICLGCVP 321 (334)
Q Consensus 243 ~~~~~~~~~~l~~~~~~~y~IpeGgs~p~a~~G~~-~la~EI~eq~~~g~~~~D~Vvvp~GtGgt~aGl~~g~k~lg~~~ 321 (334)
++++.+..++.++.+.|..||.+...+. +.+.||++|.. ..+|++|+.+|||||++|++..+|+..|.+
T Consensus 128 -------a~el~~~~p~~~~~~~Qf~NpaN~~aH~~tT~~EI~~~~~---g~~d~fVagvGTGGTitGvar~Lk~~~p~i 197 (300)
T COG0031 128 -------AKELAAEIPGYAVWLNQFENPANPEAHYETTGPEIWQQTD---GKVDAFVAGVGTGGTITGVARYLKERNPNV 197 (300)
T ss_pred -------HHHHHHhCCCceEchhhcCCCccHHHHHhhhHHHHHHHhC---CCCCEEEEeCCcchhHHHHHHHHHhhCCCc
Confidence 1123333445565667888888877754 88999999983 249999999999999999999999999999
Q ss_pred eEEEEEeccCCC
Q 019910 322 LFNTLLVKLSRG 333 (334)
Q Consensus 322 ~VigV~~~gs~~ 333 (334)
+|++|+|.+|.=
T Consensus 198 ~iv~vdP~~S~~ 209 (300)
T COG0031 198 RIVAVDPEGSVL 209 (300)
T ss_pred EEEEECCCCCcc
Confidence 999999999863
No 79
>COG0498 ThrC Threonine synthase [Amino acid transport and metabolism]
Probab=99.92 E-value=4e-24 Score=212.72 Aligned_cols=225 Identities=18% Similarity=0.166 Sum_probs=179.0
Q ss_pred CCceeeec-cChHHHHHHHhhhhhhccCCCCceeecccccccccCCCCCCCcccccCCCCcCCCCCccccCCCC---eEE
Q 019910 35 PQGICNVR-MSGEELLSRLLDRKWALTSPDSKIHQIKLFTTTEKHGGGPLGGISFLNNTCPFLGDDMIMRDEDR---CFY 110 (334)
Q Consensus 35 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~Tp~l~~~~l~~~~g~---~ly 110 (334)
.+|.+.|. +.+.+ .. -.++++.++.+...|++.++||. . .....++.++.||++..+++....+. ++|
T Consensus 26 ~cGl~lp~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~lp~----~--~~~~~~l~eg~tp~~~~~~~~~~l~~~~~~ly 97 (411)
T COG0498 26 DCGLFLPAEYPYFS-LE-EIDKLLGLSYPELAWRYLELLPV----G--EIPAVSLGEGGTPLYKAPALAAPLGVLNDNLY 97 (411)
T ss_pred cCCcccccccCccc-hh-hhhhhhcccccchHHHHHHHCCC----C--CcchhhhhhccCccccCcccchhhccCCccee
Confidence 35555554 43444 23 45588888999999999999996 2 23345899999999999888887774 499
Q ss_pred EEeCCCCCCCChhHHHHHHHhhhHHHHhcCCCEEEEeCCccchHHHHHHHHHHHhCCeEEEEeCCC-CCccccchhHHHH
Q 019910 111 VVRDDLLHPLVNGNKARKMDALLPLLEDHIVTDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGE-QPQILTGYNLIST 189 (334)
Q Consensus 111 vKrDDl~~p~~gGnK~RkL~~lL~~a~~~g~~~VVt~Gg~qsNh~~AvAaaaa~~Gl~~~ivv~~~-~p~~~~gn~~~~~ 189 (334)
+|.|.++ | +++||||.+..++..+.+.|..+|++ .+ +||.+.++|+++++.|++|+|++|.. .+. ++..++.
T Consensus 98 vk~~~~n-P-T~SFKDrg~~~~~~~~~~~g~~~I~~-AS-SGnTgAs~aaya~rag~~v~Vl~P~g~vs~---~k~~q~~ 170 (411)
T COG0498 98 VKELGHN-P-TGSFKDRGMTVLVSLAKELGAKTILC-AS-SGNTGASAAAYAARAGLKVFVLYPKGKVSP---GKLAQML 170 (411)
T ss_pred hhhhccC-C-CcchhhhhHHHHHHHHHHhcCCEEEE-eC-CchHHHHHHHHhccCCCeEEEEecCCCCCH---HHHHHHH
Confidence 9999995 8 68899999999999999998766664 33 69999999999999999999999987 543 4667899
Q ss_pred HCC-eEEEECCCChHHHHHHHHHHHHHHhccCCCccchhhhhhhhHhhhhhhcccccchhhhhccccccCcEEEEcCCCc
Q 019910 190 IYG-KVTYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASLTAQKSRASCLGQMDAHKGIDNCRKKVLIVNEGAG 268 (334)
Q Consensus 190 ~~G-~V~~v~~~~y~~~~~~~~~~a~~~~~~~g~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~IpeGgs 268 (334)
.|| +++.|+ ++|||..+.+++.++ ..+-.+ .....
T Consensus 171 ~~ga~~i~v~-G~fDda~~~vk~~~~-----------------------------------------~~~~~~--~~nsi 206 (411)
T COG0498 171 TLGAHVIAVD-GNFDDAQELVKEAAN-----------------------------------------REGLLS--AVNSI 206 (411)
T ss_pred hcCCEEEEEc-CcHHHHHHHHHHHHh-----------------------------------------hCCcee--ecccc
Confidence 999 999998 468987776654221 011122 34567
Q ss_pred chhHHHHHHHHHHHHHHhhhcCCCCCCEEEEcCCchhHHHHHHHHHHHcCCC
Q 019910 269 DAVALLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGLGAICLGCV 320 (334)
Q Consensus 269 ~p~a~~G~~~la~EI~eq~~~g~~~~D~Vvvp~GtGgt~aGl~~g~k~lg~~ 320 (334)
||....|.+++++|+++|+ +|..||+|+||+|+||.+.++++|++++-+-
T Consensus 207 Np~rlegq~t~~fe~~~ql--~~~~p~~v~vPvGn~gni~a~~~g~~~~~~~ 256 (411)
T COG0498 207 NPYRLEGQKTYAFEIAEQL--GWKAPDHVVVPVGNGGNLLAIYKGFKEGLPI 256 (411)
T ss_pred CHHHhhhhhhhHhHHHHHh--CCCCCCeEEEeCCchHHHHHHHHHHHhcccc
Confidence 8999999999999999998 7778999999999999999999999987543
No 80
>KOG1252 consensus Cystathionine beta-synthase and related enzymes [Amino acid transport and metabolism]
Probab=99.85 E-value=3.6e-21 Score=184.80 Aligned_cols=195 Identities=14% Similarity=0.049 Sum_probs=144.1
Q ss_pred cCCCCcCCCCCccccCCCCeEEEEeCCCCCCCChhHHHHHHHhhhHHHHhcCC-----CEEEEeCCccchHHHHHHHHHH
Q 019910 89 LNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIV-----TDLVTCGGCQSAHATAVAVSCA 163 (334)
Q Consensus 89 ~~~~Tp~l~~~~l~~~~g~~lyvKrDDl~~p~~gGnK~RkL~~lL~~a~~~g~-----~~VVt~Gg~qsNh~~AvAaaaa 163 (334)
+=|.||++.-.+...-..+++|+|.|-++ | .++-|+|-...++.+|...|. ++||. +++||.|.++|+.|+
T Consensus 49 liG~TPlv~ln~i~~g~~~~i~~K~E~~~-p-~~SvKdRia~sMi~~Ae~~G~i~pg~stliE--pTSGNtGigLA~~~a 124 (362)
T KOG1252|consen 49 LIGNTPLVKLNKIAGGCVARIAAKLEYMN-P-GGSVKDRIAWSMIEDAEKKGLITPGKSTLIE--PTSGNTGIGLAYMAA 124 (362)
T ss_pred HhCCCceEEeccccCCccceEEEEeeecC-C-cccHHHHHHHHHHHHHHHcCCccCCceEEEe--cCCCchHHHHHHHHH
Confidence 34557776655544444689999999994 7 689999999999999999885 45554 346999999999999
Q ss_pred HhCCeEEEEeCCCCCccccchhHHHHHCC-eEEEECCCC-hHHHHHHHHHHHHHHhccCCCccchhhhhhhhHhhhhhhc
Q 019910 164 ERGLKSHLLLRGEQPQILTGYNLISTIYG-KVTYVPRTH-YAHRIEMLKSYANLVAGNNGDVVWCNEIFEASLTAQKSRA 241 (334)
Q Consensus 164 ~~Gl~~~ivv~~~~p~~~~gn~~~~~~~G-~V~~v~~~~-y~~~~~~~~~~a~~~~~~~g~~~w~~~~~~~~~~~~~~~~ 241 (334)
..|++|+++||...+.+ +..+.+.|| +|+.+|... ++..+-+.
T Consensus 125 ~~Gyk~i~tmP~~ms~E---k~~~l~a~Gaeii~tp~a~~~~~~e~ai-------------------------------- 169 (362)
T KOG1252|consen 125 LRGYKCIITMPEKMSKE---KRILLRALGAEIILTPPAAGMKGPESAI-------------------------------- 169 (362)
T ss_pred HcCceEEEEechhhhHH---HHHHHHHcCCEEEecChHHccCChHHHH--------------------------------
Confidence 99999999999987655 456889999 999997421 11111111
Q ss_pred ccccchhhhhccccccCcEEEEcCCCcchhH-HHHHHHHHHHHHHhhhcCCCCCCEEEEcCCchhHHHHHHHHHHHcCCC
Q 019910 242 SCLGQMDAHKGIDNCRKKVLIVNEGAGDAVA-LLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGLGAICLGCV 320 (334)
Q Consensus 242 ~~~~~~~~~~~l~~~~~~~y~IpeGgs~p~a-~~G~~~la~EI~eq~~~g~~~~D~Vvvp~GtGgt~aGl~~g~k~lg~~ 320 (334)
+.+.++.++.++.| +.++..||-. ..-|.+.+.||+.|+. ..+|.+|.++|||||++|+.+-+++.+++
T Consensus 170 ------~~a~~l~~~~pna~-~l~Qf~np~Np~~hy~ttg~EI~~q~~---g~vDi~V~gaGTGGTitgvGRylke~~~~ 239 (362)
T KOG1252|consen 170 ------GKAEELLNKTPNAY-ILDQFHNPGNPLAHYETTGPEIWRQLD---GKVDIFVAGAGTGGTITGVGRYLKEQNPN 239 (362)
T ss_pred ------HHHHHHHHhCCChH-HHHHhcCCCCcccccccccHHHHHHhc---CCCCEEEeccCCCceeechhHHHHHhCCC
Confidence 11122333333333 2233323211 1338889999999983 36999999999999999999999999999
Q ss_pred CeEEEEEeccCC
Q 019910 321 PLFNTLLVKLSR 332 (334)
Q Consensus 321 ~~VigV~~~gs~ 332 (334)
++|++|++.+|.
T Consensus 240 ~kVv~vdp~~S~ 251 (362)
T KOG1252|consen 240 IKVVGVDPQESI 251 (362)
T ss_pred CEEEEeCCCcce
Confidence 999999998884
No 81
>KOG1395 consensus Tryptophan synthase beta chain [Amino acid transport and metabolism]
Probab=99.83 E-value=1.2e-20 Score=181.73 Aligned_cols=250 Identities=15% Similarity=0.045 Sum_probs=165.3
Q ss_pred CCcCCCCceeeeccChHHHHHHHhhh-hhhccCCCCceeec-ccccccccCCCCCCCcccccCCCCcCCCCCccccCCCC
Q 019910 30 QLSNSPQGICNVRMSGEELLSRLLDR-KWALTSPDSKIHQI-KLFTTTEKHGGGPLGGISFLNNTCPFLGDDMIMRDEDR 107 (334)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~p~~~~~~~-~ll~~~~~~~~~~~~~~~~~~~~Tp~l~~~~l~~~~g~ 107 (334)
+.++-|+|.+.||-+.+-+. .|..- -..+..+++ |.-. +++. +-++++|+.+.++||.+++- |.
T Consensus 74 ~r~gkfgg~yvPE~L~h~l~-ELek~f~~~~~d~df-~ee~~eiy~-----y~gRpspL~~AkRLte~~q~-------ga 139 (477)
T KOG1395|consen 74 PRFGKFGGPYVPEALAHCLP-ELEKQFYTAERDEDF-WEEFLEIYK-----YLGRPSPLIRAKRLTEHCQT-------GA 139 (477)
T ss_pred ccccccCCccChHHHHHHHH-HHHHHHHHHhccchH-HHHHHHHHH-----HcCCCchhHHHHHHHHHhCC-------CC
Confidence 67889999999998888764 55544 333344443 4433 3332 46777788888888888764 78
Q ss_pred eEEEEeCCCCCCCChhHHHHHHHhhhHHHHhcCCCEEEE-eCCccchHHHHHHHHHHHhCCeEEEEeCCCCCccccchhH
Q 019910 108 CFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIVTDLVT-CGGCQSAHATAVAVSCAERGLKSHLLLRGEQPQILTGYNL 186 (334)
Q Consensus 108 ~lyvKrDDl~~p~~gGnK~RkL~~lL~~a~~~g~~~VVt-~Gg~qsNh~~AvAaaaa~~Gl~~~ivv~~~~p~~~~gn~~ 186 (334)
.||+||||+|| +|+.|+-..-.-.-.|++.|.+.||+ +|+ |-|+.|+|.+|+++||+|+|+|-.+.-..+.-|++
T Consensus 140 ~IylKrEdlnh--~GsHKiNnav~QallakrlGkknviaETGA--GQhGvatA~a~a~FGl~C~v~mgAed~~rqalnvf 215 (477)
T KOG1395|consen 140 RIYLKREDLNH--TGSHKINNAVAQALLAKRLGKKNVIAETGA--GQHGVATATACAKFGLDCTVYMGAEDYRRQALNVF 215 (477)
T ss_pred EEEEEecCCCc--cccCCcccHHHHHHHHHHhcccceeeccCC--CccchHHHHHHHHhCCceEEEechhHHHHHHHHHH
Confidence 99999999976 58887766544344468999999997 666 45999999999999999999998866555666889
Q ss_pred HHHHCC-eEEEECCCChHHHHHHHHHHHHHHhccCCCccchhhhhhhhHhhhhhhcccccchhhhhccccccCcEEEEcC
Q 019910 187 ISTIYG-KVTYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASLTAQKSRASCLGQMDAHKGIDNCRKKVLIVNE 265 (334)
Q Consensus 187 ~~~~~G-~V~~v~~~~y~~~~~~~~~~a~~~~~~~g~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~Ipe 265 (334)
+||++| +|+.|+.+.-..+++.-+. ...|..++ + +++ |+ +.. ..+++|| |.
T Consensus 216 rmrllGAkV~pv~sGt~tLrda~sea----------~r~wvt~~----e-----tt~---y~--~gs--~~gphp~--pt 267 (477)
T KOG1395|consen 216 RMRLLGAKVHPVTSGTRTLRDATSEA----------GRLWVTNS----E-----TTH---YA--AGS--AIGPHPY--PT 267 (477)
T ss_pred HHHHhCceEeecCCCceehhcccchh----------hhhhhhhh----h-----eee---ee--ecc--cCCCCCc--HH
Confidence 999999 9999987653323222211 12552211 0 111 10 000 1122333 21
Q ss_pred CCcchhHHHHHHHHHHHHH-HhhhcCCCCCCEEEEcCCchhHHHHHHHHHHHcCCCCeEEEEEeccC
Q 019910 266 GAGDAVALLGVFRLLQYLS-QDHLLGRKRAIKFVVDAGTGTTAVGLGLGAICLGCVPLFNTLLVKLS 331 (334)
Q Consensus 266 Ggs~p~a~~G~~~la~EI~-eq~~~g~~~~D~Vvvp~GtGgt~aGl~~g~k~lg~~~~VigV~~~gs 331 (334)
-..... ..++.|-. ||.+.-...||.||.|+|+|+..+||.--|. ....+..|||+..|.
T Consensus 268 ~vr~fh-----svIg~Et~~Q~me~~g~~PD~vvaCvGGGSN~~Glf~pF~-~dk~v~~igveaagd 328 (477)
T KOG1395|consen 268 VVRTFH-----SVIGKETKIQQMEKFGKLPDAVVACVGGGSNSAGLFSPFI-RDKSVGMIGVEAAGD 328 (477)
T ss_pred HHHHHH-----HHHhHHHHHHHHHHhCCCCCeEEEeccCCCccccccchhh-ccchhheeeeeeccc
Confidence 111111 23455544 3333222579999999999999999998875 356678888887664
No 82
>KOG1481 consensus Cysteine synthase [Amino acid transport and metabolism]
Probab=99.78 E-value=9.7e-19 Score=164.56 Aligned_cols=200 Identities=16% Similarity=0.084 Sum_probs=150.5
Q ss_pred cCCCCcCCCCCccccCCCCeEEEEeCCCCCCCChhHHHHHHHhhhHHHHhcCC---CEEEEeCCccchHHHHHHHHHHHh
Q 019910 89 LNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIV---TDLVTCGGCQSAHATAVAVSCAER 165 (334)
Q Consensus 89 ~~~~Tp~l~~~~l~~~~g~~lyvKrDDl~~p~~gGnK~RkL~~lL~~a~~~g~---~~VVt~Gg~qsNh~~AvAaaaa~~ 165 (334)
+=+.||+++-..|++..|++++.|.|-+ +| .|+-|+|.+.+++..|++.|. -+.|+-| +.||.+.++|..|..+
T Consensus 46 ~IGnTpliri~sLs~aTGcnIlaK~Ef~-NP-ggS~KDRvAl~iir~Aee~GkL~~gg~v~EG-taGsTgIslA~v~~a~ 122 (391)
T KOG1481|consen 46 AIGNTPLIRINSLSNATGCNILAKAEFL-NP-GGSVKDRVALYIIRTAEEKGKLVRGGTVVEG-TAGSTGISLAHVARAL 122 (391)
T ss_pred hhCCCceEEeeccccccccchhhhhhcc-CC-CCChhhhhHHHHHHHHHHcCCcccCceEEec-CCCccchhHHHhhhhc
Confidence 4467999999999999999999999999 58 588999999999999999886 3455454 4699999999999999
Q ss_pred CCeEEEEeCCCCCccccchhHHHHHCC-eEEEECCCChHHHHHHHHHHHHHHhccCCCccchhhhhhhhHhhhhhhcccc
Q 019910 166 GLKSHLLLRGEQPQILTGYNLISTIYG-KVTYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASLTAQKSRASCL 244 (334)
Q Consensus 166 Gl~~~ivv~~~~p~~~~gn~~~~~~~G-~V~~v~~~~y~~~~~~~~~~a~~~~~~~g~~~w~~~~~~~~~~~~~~~~~~~ 244 (334)
|.+|||+||.+++.. +..+...+| +|..|+....-+.+.++.. |+| +.+
T Consensus 123 Gyk~~I~mPddqs~e---K~~ile~LGA~V~rV~pa~i~dp~~yvn~-Arr-~an------------------------- 172 (391)
T KOG1481|consen 123 GYKCHIYMPDDQSQE---KSDILEFLGAEVHRVPPAPIVDPNHYVNQ-ARR-AAN------------------------- 172 (391)
T ss_pred CcceEEECCChHHHH---HHHHHHHhcceeeecCCcCccChhHHHHH-HHH-Hhh-------------------------
Confidence 999999999988765 557889999 9999875443333333221 221 111
Q ss_pred cchhhhhccccc--cCcEEEEcCCCcchhHHH-HHHHHHHHHHHhhhcCCCCCCEEEEcCCchhHHHHHHHHHHHcCCC-
Q 019910 245 GQMDAHKGIDNC--RKKVLIVNEGAGDAVALL-GVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGLGAICLGCV- 320 (334)
Q Consensus 245 ~~~~~~~~l~~~--~~~~y~IpeGgs~p~a~~-G~~~la~EI~eq~~~g~~~~D~Vvvp~GtGgt~aGl~~g~k~lg~~- 320 (334)
++.+. +.+-|+ ..+-.|+...+ .|.+.+.||+.|.. | ..|.+++.+|||||++|+.+-+|+..+.
T Consensus 173 -------~~~~~~ngi~g~f-AdQFeN~AN~~aHyetTGPEIw~Qtk-G--niDaFia~~GTGGTiaGVskyLkek~~~~ 241 (391)
T KOG1481|consen 173 -------ETPNASNGIRGWF-ADQFENVANWLAHYETTGPEIWHQTK-G--NIDAFIAGTGTGGTIAGVSKYLKEKSDGR 241 (391)
T ss_pred -------hcccccCCcccch-hhhhcCHHHHHHHhcCcCcHHHHhhc-C--CcceEEeccCCCcchHHHHHHHhhcCCCc
Confidence 11111 112221 23444444443 37888999999874 4 5899999999999999999999998875
Q ss_pred CeEEEEEeccCC
Q 019910 321 PLFNTLLVKLSR 332 (334)
Q Consensus 321 ~~VigV~~~gs~ 332 (334)
+.|.-.+|-||-
T Consensus 242 v~~~laDPpGSG 253 (391)
T KOG1481|consen 242 VAVFLADPPGSG 253 (391)
T ss_pred eEEEEeCCCCCc
Confidence 888888888873
No 83
>PRK09225 threonine synthase; Validated
Probab=99.60 E-value=3.1e-14 Score=144.45 Aligned_cols=172 Identities=12% Similarity=0.091 Sum_probs=126.5
Q ss_pred CeEEEEeCCCCCCCChhHHHHHHHh---hhHHHHhcCCCEEEEeCCccchHHHHH-HHHHHHhCCeEEEEeCCC-CCccc
Q 019910 107 RCFYVVRDDLLHPLVNGNKARKMDA---LLPLLEDHIVTDLVTCGGCQSAHATAV-AVSCAERGLKSHLLLRGE-QPQIL 181 (334)
Q Consensus 107 ~~lyvKrDDl~~p~~gGnK~RkL~~---lL~~a~~~g~~~VVt~Gg~qsNh~~Av-Aaaaa~~Gl~~~ivv~~~-~p~~~ 181 (334)
.++|+. |-..+| +++||||.+.. ++..+.+.+..+|++. ++||.|.|+ |+++++.|++|+|++|.. .++.
T Consensus 96 ~~~~~l-ELfhGP-T~sFKD~a~~~l~~~l~~a~~~~~~~Il~A--TSGdtG~Aa~aaf~~~~gi~~~V~~P~g~vs~~- 170 (462)
T PRK09225 96 DNLYVL-ELFHGP-TLAFKDFALQFLAQLLEYVLKGEKITILGA--TSGDTGSAAAEAFRGKPNVRVVILYPKGKVSPV- 170 (462)
T ss_pred CCceeH-hhccCC-ccchhhhHHHHHHHHHHHHHhCCCcEEEEc--CCCcHHHHHHHHHhCcCCCEEEEEEcCCCCCHH-
Confidence 358885 444468 68899999988 7887776336666643 369999988 899999999999999985 6654
Q ss_pred cchhHHHHHC-C-eE--EEECCCChHHHHHHHHHHHHHHhccCCCccchhhhhhhhHhhhhhhcccccchhhhhcccccc
Q 019910 182 TGYNLISTIY-G-KV--TYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASLTAQKSRASCLGQMDAHKGIDNCR 257 (334)
Q Consensus 182 ~gn~~~~~~~-G-~V--~~v~~~~y~~~~~~~~~~a~~~~~~~g~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 257 (334)
+..+|..+ | +| +.|+ ++||+....+++.. .+. ++....
T Consensus 171 --q~~Qm~t~~g~nv~vi~V~-G~fDD~q~~vk~~~----~d~-------------------------------~~~~~~ 212 (462)
T PRK09225 171 --QEKQMTTLQGDNIHVVAVE-GNFDDCQALVKAAF----NDE-------------------------------ELKEKL 212 (462)
T ss_pred --HHHHHHhhcCCCeEEEEeC-CCHHHHHHHHHHHh----hch-------------------------------hhhhcC
Confidence 34677788 7 76 6777 56998776655321 110 121111
Q ss_pred CcEEEEcCCCcchhHHHHHHHHHHHHHHhhhcCC--CCCCEEEEcCCchhHHHHHHHHHHHcCCCC-eEEEEE
Q 019910 258 KKVLIVNEGAGDAVALLGVFRLLQYLSQDHLLGR--KRAIKFVVDAGTGTTAVGLGLGAICLGCVP-LFNTLL 327 (334)
Q Consensus 258 ~~~y~IpeGgs~p~a~~G~~~la~EI~eq~~~g~--~~~D~Vvvp~GtGgt~aGl~~g~k~lg~~~-~VigV~ 327 (334)
..+.. .--||..++|.++.++|+.+|+ +| ..||.|+||+|.||.+.|.++| +.+|.++ ++|+++
T Consensus 213 -~l~sa--NSiN~~Ri~gQ~~yyfea~~ql--~~~~~~p~~~vVPtGnfgni~a~~~A-k~mGlpi~kli~A~ 279 (462)
T PRK09225 213 -KLSSA--NSINIGRLLAQIVYYFYAYLQL--GIEAGEKVNFSVPSGNFGNILAGYYA-KKMGLPIKRLIVAT 279 (462)
T ss_pred -ceEEE--eccCHHHHHHHHHHHHHHHHHh--ccccCCCCEEEEECCcHHHHHHHHHH-HHcCCCcceEEEEe
Confidence 23322 2358999999999999999998 44 3589999999999999999999 7889876 777765
No 84
>cd01560 Thr-synth_2 Threonine synthase catalyzes the final step of threonine biosynthesis. The conversion of O-phosphohomoserine into threonine and inorganic phosphate is pyridoxal 5'-phosphate dependent. The Thr-synth_1 CD includes members from higher plants, cyanobacteria, archaebacteria and eubacterial groups. This CD, Thr-synth_2, includes enzymes from fungi and eubacterial groups, as well as, metazoan threonine synthase-like proteins.
Probab=99.54 E-value=2.9e-13 Score=137.40 Aligned_cols=171 Identities=12% Similarity=0.079 Sum_probs=124.6
Q ss_pred CeEEEEeCCCCCCCChhHHHHHHHhh---hHHHHhc--CCCEEEEeCCccchHHHH-HHHHHHHhCCeEEEEeCCC-CCc
Q 019910 107 RCFYVVRDDLLHPLVNGNKARKMDAL---LPLLEDH--IVTDLVTCGGCQSAHATA-VAVSCAERGLKSHLLLRGE-QPQ 179 (334)
Q Consensus 107 ~~lyvKrDDl~~p~~gGnK~RkL~~l---L~~a~~~--g~~~VVt~Gg~qsNh~~A-vAaaaa~~Gl~~~ivv~~~-~p~ 179 (334)
.++|++..-+ +| +++||||.+..+ +..+.+. +..+|++. ++||.|.| +|++|++.|++|+|++|.. .++
T Consensus 95 ~~~~~lELfh-GP-T~sFKD~a~~~l~~l~~~~~~~~~~~~~Il~A--TSGdTG~Aa~aaf~~~~gi~v~Vl~P~g~vs~ 170 (460)
T cd01560 95 DNLYVLELFH-GP-TLAFKDMALQFLGRLLEYFLKRRNERITILVA--TSGDTGSAAIEGFRGKPNVDVVVLYPKGGVSP 170 (460)
T ss_pred CCcEEeeeee-CC-CcchHHhHHHHHHHHHHHHHHhcCCCeEEEEc--CCCcHHHHHHHHHhCcCCCEEEEEEcCCCCCH
Confidence 4689987777 68 688999999865 6666554 66777754 36999999 5899999999999999985 665
Q ss_pred cccchhHHHHHCC----eEEEECCCChHHHHHHHHHHHHHHhccCCCccchhhhhhhhHhhhhhhcccccchhhhhcccc
Q 019910 180 ILTGYNLISTIYG----KVTYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASLTAQKSRASCLGQMDAHKGIDN 255 (334)
Q Consensus 180 ~~~gn~~~~~~~G----~V~~v~~~~y~~~~~~~~~~a~~~~~~~g~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 255 (334)
. +..+|..+| +++.|+ ++||+....+++.. .+. ++.+
T Consensus 171 ~---Q~~Qm~t~g~~Nv~vi~V~-G~fDd~q~~vk~~~----~d~-------------------------------~~~~ 211 (460)
T cd01560 171 I---QELQMTTLPADNVHVVAVE-GDFDDCQSLVKALF----ADE-------------------------------DFNK 211 (460)
T ss_pred H---HHHHHHhhCCCceEEEEEc-CCHHHHHHHHHHHh----cCh-------------------------------hhHh
Confidence 4 346778887 467777 56998766655321 110 1211
Q ss_pred ccCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhcCCC---CCCEEEEcCCchhHHHHHHHHHHHcCCCC-eEEEE
Q 019910 256 CRKKVLIVNEGAGDAVALLGVFRLLQYLSQDHLLGRK---RAIKFVVDAGTGTTAVGLGLGAICLGCVP-LFNTL 326 (334)
Q Consensus 256 ~~~~~y~IpeGgs~p~a~~G~~~la~EI~eq~~~g~~---~~D~Vvvp~GtGgt~aGl~~g~k~lg~~~-~VigV 326 (334)
.. ..+.. .--||..++|.++.++|+.+|+ +|. .||.|+||+|.||.+.|.++|. .+|.++ ++|++
T Consensus 212 ~~-~l~sa--NSiN~~Ri~~Q~~yyf~a~~ql--~~~~~~~p~~~vVPtGnfgni~a~~~Ak-~mGlpi~kli~a 280 (460)
T cd01560 212 KL-KLSSA--NSINWARILAQIVYYFYAYLQL--LKRGEGEKVEFSVPTGNFGNILAGYYAK-KMGLPIKKLIVA 280 (460)
T ss_pred cc-eEEEE--eccCHHHHHHHHHHHHHHHHHh--ccccCCCCCEEEEECCcHHHHHHHHHHH-HcCCCCccEEEE
Confidence 11 22322 2358999999999999999998 443 6899999999999999999984 578765 66664
No 85
>COG1350 Predicted alternative tryptophan synthase beta-subunit (paralog of TrpB) [General function prediction only]
Probab=99.50 E-value=1.5e-13 Score=132.09 Aligned_cols=210 Identities=14% Similarity=0.078 Sum_probs=133.5
Q ss_pred CCcCCCCCccccCCC--CeEEEEeCCCCCCCChhHHHHHHHhhhHHHHhcCCCEEEE-eCCccchHHHHHHHHHHHhCCe
Q 019910 92 TCPFLGDDMIMRDED--RCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIVTDLVT-CGGCQSAHATAVAVSCAERGLK 168 (334)
Q Consensus 92 ~Tp~l~~~~l~~~~g--~~lyvKrDDl~~p~~gGnK~RkL~~lL~~a~~~g~~~VVt-~Gg~qsNh~~AvAaaaa~~Gl~ 168 (334)
=||++++.+|.+-++ .+||.|.|..+ | +||.|.-.+-.-.-.++..|++.|+| +|+ |-.+.|++.+|+.+|++
T Consensus 78 PTPL~RA~~LE~~L~tparIYyK~Eg~t-p-tGSHKiNTAlAqaYyak~eg~~rl~TETGA--GQWGsAlslA~alf~lk 153 (432)
T COG1350 78 PTPLIRAKNLEEALGTPARIYYKYEGVT-P-TGSHKINTALAQAYYAKKEGAKRLTTETGA--GQWGSALSLAAALFGLK 153 (432)
T ss_pred CCchhhhhhHHHHhCCCcEEEEEecccC-C-CCCCCcchHHHHHHHHHhcCceeeecccCC--chHHHHHHHHHHHhCce
Confidence 377888888777775 69999999996 6 58888776644444478999999998 666 45999999999999999
Q ss_pred EEEEeCCCCCccccchhHHHHHCC-eEEEECCCChHHHHHHHHHHHHHHhcc-C--CCccchhhhhhhhHhhhhhhcccc
Q 019910 169 SHLLLRGEQPQILTGYNLISTIYG-KVTYVPRTHYAHRIEMLKSYANLVAGN-N--GDVVWCNEIFEASLTAQKSRASCL 244 (334)
Q Consensus 169 ~~ivv~~~~p~~~~gn~~~~~~~G-~V~~v~~~~y~~~~~~~~~~a~~~~~~-~--g~~~w~~~~~~~~~~~~~~~~~~~ 244 (334)
|+|||-...-.++.-...+|++|| +|+.-+.. ..+..+-+ ++.+ + |..+. .|-
T Consensus 154 ~~V~Mvr~Sy~qKpyRk~lM~~yGa~V~pSPS~-~Te~Grk~------l~e~p~hPGSLGI--AIS-------------- 210 (432)
T COG1350 154 ATVFMVRVSYYQKPYRKYLMELYGAEVVPSPSE-LTEFGRKI------LKEDPDHPGSLGI--AIS-------------- 210 (432)
T ss_pred eEEEEEehhhhcchHHHHHHHHhCCeecCCCcc-hhHHHHHH------HhcCCCCCchhHH--HHH--------------
Confidence 999998733222222345899999 99887643 33322211 1121 1 22111 000
Q ss_pred cchhhhhccccccCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhcCCCCCCEEEEcCCchhHHHHHHHHH---HHcCC-C
Q 019910 245 GQMDAHKGIDNCRKKVLIVNEGAGDAVALLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGLGA---ICLGC-V 320 (334)
Q Consensus 245 ~~~~~~~~l~~~~~~~y~IpeGgs~p~a~~G~~~la~EI~eq~~~g~~~~D~Vvvp~GtGgt~aGl~~g~---k~lg~-~ 320 (334)
++.+... ..++..|++...-|. -++-.--+++|..+|++.-...||.||-|+|+|+.++|+..-| ++-|. .
T Consensus 211 ---EAiE~al-~~~~~kY~lGSVlnh-vllhQTViGlEakkQle~~~e~PDv~igcvGGGSNfag~~yPfi~d~l~g~~~ 285 (432)
T COG1350 211 ---EAIEYAL-KNENTKYSLGSVLNH-VLLHQTVIGLEAKKQLEQAGEDPDVIIGCVGGGSNFAGLTYPFIGDKLRGKKE 285 (432)
T ss_pred ---HHHHHHH-hCCCceecchhHHHH-HHHHHHHHhHHHHHHHHhcCCCCCEEEEeccCCCccccccchhhhhhhcCCce
Confidence 1111111 122333343322121 1122223578887777533356999999999999999997654 33333 3
Q ss_pred CeEEEEEeccCCC
Q 019910 321 PLFNTLLVKLSRG 333 (334)
Q Consensus 321 ~~VigV~~~gs~~ 333 (334)
.++|+|+++..+.
T Consensus 286 ~~fiAvep~a~P~ 298 (432)
T COG1350 286 TRFIAVEPKACPK 298 (432)
T ss_pred eEEEEeCCccCCc
Confidence 8999999876653
No 86
>COG3048 DsdA D-serine dehydratase [Amino acid transport and metabolism]
Probab=98.57 E-value=9.1e-07 Score=85.21 Aligned_cols=178 Identities=14% Similarity=0.124 Sum_probs=126.2
Q ss_pred CeEEEEeCCCCCCCChhHHHHHHH-hhhHH----HHhcCC--------------------CEEEEeCCccchHHHHHHHH
Q 019910 107 RCFYVVRDDLLHPLVNGNKARKMD-ALLPL----LEDHIV--------------------TDLVTCGGCQSAHATAVAVS 161 (334)
Q Consensus 107 ~~lyvKrDDl~~p~~gGnK~RkL~-~lL~~----a~~~g~--------------------~~VVt~Gg~qsNh~~AvAaa 161 (334)
.++|+|+|..+ |..|+.|+|+-- ..|.. |.+.|. +.=|..|| +||.+.++-..
T Consensus 101 G~llLK~DshL-pIsGSIKARGGIYEVL~hAE~LAle~Gll~~~DDYs~L~~~~f~~FFs~ysIaVGS-TGNLGlSIGI~ 178 (443)
T COG3048 101 GRLLLKKDSHL-PISGSIKARGGIYEVLKHAEKLALEAGLLTLEDDYSILLSEEFKDFFSRYSIAVGS-TGNLGLSIGIM 178 (443)
T ss_pred cceeeeccCCC-CcccceeccccHHHHHHHHHHHHHhcCcccccchHHHhhcHHHHHHHHhheEeecc-cCccceehhhh
Confidence 46999999997 767999999743 23333 444543 22355676 79999999999
Q ss_pred HHHhCCeEEEEeCCCCCccccchhHHHHHCC-eEEEECCCChHHHHHHHHHHHHHHhccCCCccchhhhhhhhHhhhhhh
Q 019910 162 CAERGLKSHLLLRGEQPQILTGYNLISTIYG-KVTYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASLTAQKSR 240 (334)
Q Consensus 162 aa~~Gl~~~ivv~~~~p~~~~gn~~~~~~~G-~V~~v~~~~y~~~~~~~~~~a~~~~~~~g~~~w~~~~~~~~~~~~~~~ 240 (334)
.+.+|+++++-|..++-.. +....|..| +|+.... +|. .++++...
T Consensus 179 sA~lGF~vtVHMSADAr~W---KKd~LRs~gV~ViEYe~-DY~---~AVeeGRk-------------------------- 225 (443)
T COG3048 179 SAALGFKVTVHMSADARAW---KKDKLRSHGVTVVEYEQ-DYG---VAVEEGRK-------------------------- 225 (443)
T ss_pred hhhhcceEEEEecchHHHH---HHHHHHhcCceEEEecc-hhh---HHHHHhhh--------------------------
Confidence 9999999999999877444 445778899 8888764 465 33332110
Q ss_pred cccccchhhhhccccccCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhc-C----CCCCCEEEEcCCchhHHHHHHHHHH
Q 019910 241 ASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVALLGVFRLLQYLSQDHLL-G----RKRAIKFVVDAGTGTTAVGLGLGAI 315 (334)
Q Consensus 241 ~~~~~~~~~~~~l~~~~~~~y~IpeGgs~p~a~~G~~~la~EI~eq~~~-g----~~~~D~Vvvp~GtGgt~aGl~~g~k 315 (334)
-....+..|+|-. -.+..-.+||.-.++-|..|+.. | ...|-.|.+|||-||---|++-|+|
T Consensus 226 ------------~a~~DP~c~FiDD-E~S~~LFLGYaVAa~Rlk~Q~d~~gi~vd~ehPLfVylPCGVGGgPGGVafGLK 292 (443)
T COG3048 226 ------------EAESDPNCFFIDD-ENSRTLFLGYAVAAQRLKKQFDEQGIVVDAEHPLFVYLPCGVGGGPGGVAFGLK 292 (443)
T ss_pred ------------hhccCCceEEecc-cchhhhhhhHHHHHHHHHHHHHhcCceecCCCceEEEeecCCCCCcchhhhhhH
Confidence 1123456677732 23355578998888888877632 2 1236679999999999999999998
Q ss_pred Hc-CCCCeEEEEEeccCC
Q 019910 316 CL-GCVPLFNTLLVKLSR 332 (334)
Q Consensus 316 ~l-g~~~~VigV~~~gs~ 332 (334)
.+ +.++.++=++|.-|+
T Consensus 293 l~fgd~VhcfFaEPthsP 310 (443)
T COG3048 293 LAFGDHVHCFFAEPTHSP 310 (443)
T ss_pred hhhcCceEEEEecCCCCh
Confidence 75 678888888887665
No 87
>PRK15408 autoinducer 2-binding protein lsrB; Provisional
Probab=91.85 E-value=6.7 Score=38.29 Aligned_cols=44 Identities=9% Similarity=0.083 Sum_probs=31.5
Q ss_pred hhhHHHHhcCCCEEEEeCCccchHHHHHHHHHHHhCCeEEEEeCC
Q 019910 131 ALLPLLEDHIVTDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRG 175 (334)
Q Consensus 131 ~lL~~a~~~g~~~VVt~Gg~qsNh~~AvAaaaa~~Gl~~~ivv~~ 175 (334)
..+..+..++++.|+..+ ...+.....--.|...|++++.+-..
T Consensus 71 ~~i~~li~~~vdgIiv~~-~d~~al~~~l~~a~~~gIpVV~~d~~ 114 (336)
T PRK15408 71 QLINNFVNQGYNAIIVSA-VSPDGLCPALKRAMQRGVKVLTWDSD 114 (336)
T ss_pred HHHHHHHHcCCCEEEEec-CCHHHHHHHHHHHHHCCCeEEEeCCC
Confidence 456677789999988643 34455556666688889999888654
No 88
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=60.10 E-value=25 Score=32.61 Aligned_cols=45 Identities=11% Similarity=-0.032 Sum_probs=30.0
Q ss_pred HHHHHHhhhcCCCCCCEEE-EcCCchhHHHHHHHHHHHcCCCCeEEEEEec
Q 019910 280 LQYLSQDHLLGRKRAIKFV-VDAGTGTTAVGLGLGAICLGCVPLFNTLLVK 329 (334)
Q Consensus 280 a~EI~eq~~~g~~~~D~Vv-vp~GtGgt~aGl~~g~k~lg~~~~VigV~~~ 329 (334)
.+||..++ +||.|+ +.+-.||.+.-.+.=++.++++.+|+||++.
T Consensus 24 ~qeli~~~-----kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDId 69 (206)
T PF04989_consen 24 YQELIWEL-----KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDID 69 (206)
T ss_dssp HHHHHHHH-------SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-
T ss_pred HHHHHHHh-----CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCC
Confidence 37777666 477755 5566888888888888899999999999983
No 89
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=56.15 E-value=36 Score=25.59 Aligned_cols=33 Identities=27% Similarity=0.347 Sum_probs=28.0
Q ss_pred EEEeCCccchHHHHHHHHHHHhCCeEEEEeCCCCC
Q 019910 144 LVTCGGCQSAHATAVAVSCAERGLKSHLLLRGEQP 178 (334)
Q Consensus 144 VVt~Gg~qsNh~~AvAaaaa~~Gl~~~ivv~~~~p 178 (334)
|+-.|| |.-+.-+|...+++|.+++++.+.+.+
T Consensus 2 vvViGg--G~ig~E~A~~l~~~g~~vtli~~~~~~ 34 (80)
T PF00070_consen 2 VVVIGG--GFIGIELAEALAELGKEVTLIERSDRL 34 (80)
T ss_dssp EEEESS--SHHHHHHHHHHHHTTSEEEEEESSSSS
T ss_pred EEEECc--CHHHHHHHHHHHHhCcEEEEEeccchh
Confidence 444676 789999999999999999999988664
No 90
>PRK06202 hypothetical protein; Provisional
Probab=56.10 E-value=14 Score=33.65 Aligned_cols=35 Identities=17% Similarity=0.037 Sum_probs=25.7
Q ss_pred EEEEcCCchhHHHHHHHHHHHcCCCCeEEEEEecc
Q 019910 296 KFVVDAGTGTTAVGLGLGAICLGCVPLFNTLLVKL 330 (334)
Q Consensus 296 ~Vvvp~GtGgt~aGl~~g~k~lg~~~~VigV~~~g 330 (334)
.+=+.||+|....-|+..++..++.++|+||+++.
T Consensus 64 iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~ 98 (232)
T PRK06202 64 LLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDP 98 (232)
T ss_pred EEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCH
Confidence 45567777776666666666678889999999863
No 91
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=55.95 E-value=16 Score=31.60 Aligned_cols=31 Identities=29% Similarity=0.341 Sum_probs=26.6
Q ss_pred EEEeCCccchHHHHHHHHHHHhCCeEEEEeCCC
Q 019910 144 LVTCGGCQSAHATAVAVSCAERGLKSHLLLRGE 176 (334)
Q Consensus 144 VVt~Gg~qsNh~~AvAaaaa~~Gl~~~ivv~~~ 176 (334)
|.-+|+ ||.|.|+|...+..|.++.++.+..
T Consensus 2 I~ViGa--G~~G~AlA~~la~~g~~V~l~~~~~ 32 (157)
T PF01210_consen 2 IAVIGA--GNWGTALAALLADNGHEVTLWGRDE 32 (157)
T ss_dssp EEEESS--SHHHHHHHHHHHHCTEEEEEETSCH
T ss_pred EEEECc--CHHHHHHHHHHHHcCCEEEEEeccH
Confidence 334776 8999999999999999999998863
No 92
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=54.45 E-value=34 Score=32.62 Aligned_cols=63 Identities=17% Similarity=0.196 Sum_probs=35.4
Q ss_pred EEEEcCCCcchhHHHHHHHHHHHHHHhhhcCCCCCCEEEEcCCchhHHHHHHHHHHHcCCCCeEEEEEec
Q 019910 260 VLIVNEGAGDAVALLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGLGAICLGCVPLFNTLLVK 329 (334)
Q Consensus 260 ~y~IpeGgs~p~a~~G~~~la~EI~eq~~~g~~~~D~Vvvp~GtGgt~aGl~~g~k~lg~~~~VigV~~~ 329 (334)
...+..|.+..-+...+..+..+..+... .+...|+.+|+|+-...+. +..++. .+|+||+++
T Consensus 129 ~i~ldpg~aFgtG~h~tt~l~l~~l~~~~----~~g~~VLDvGcGsG~lai~--aa~~g~-~~V~avDid 191 (288)
T TIGR00406 129 IIMLDPGLAFGTGTHPTTSLCLEWLEDLD----LKDKNVIDVGCGSGILSIA--ALKLGA-AKVVGIDID 191 (288)
T ss_pred EEEECCCCcccCCCCHHHHHHHHHHHhhc----CCCCEEEEeCCChhHHHHH--HHHcCC-CeEEEEECC
Confidence 34454443333344446666777766542 2345577777776444433 334553 599999975
No 93
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=54.04 E-value=13 Score=29.09 Aligned_cols=31 Identities=16% Similarity=0.080 Sum_probs=20.7
Q ss_pred EcCCchhHHHHHHHHHHHcCCCCeEEEEEecc
Q 019910 299 VDAGTGTTAVGLGLGAICLGCVPLFNTLLVKL 330 (334)
Q Consensus 299 vp~GtGgt~aGl~~g~k~lg~~~~VigV~~~g 330 (334)
+++|+|.....++..+ ..+++.+++||+++.
T Consensus 4 lgcG~G~~~~~l~~~~-~~~~~~~~~gvD~s~ 34 (101)
T PF13649_consen 4 LGCGTGRVTRALARRF-DAGPSSRVIGVDISP 34 (101)
T ss_dssp ET-TTSHHHHHHHHHS------SEEEEEES-H
T ss_pred eecCCcHHHHHHHHHh-hhcccceEEEEECCH
Confidence 5789999998888777 556789999999863
No 94
>cd06356 PBP1_Amide_Urea_BP_like Periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF). This group includes the type I periplasmic-binding proteins that are predicted to have a function similar to that of an active transport system for short chain amides and/or urea in bacteria and Archaea, by sequence comparison and phylogenetic analysis.
Probab=51.65 E-value=2.2e+02 Score=27.05 Aligned_cols=54 Identities=15% Similarity=-0.018 Sum_probs=33.9
Q ss_pred EEEeCCCCCCCChhHHHHHHHhhhHHHHhcCCCEEEEeCCccchHHHHHHHHHHHhCCeEEE
Q 019910 110 YVVRDDLLHPLVNGNKARKMDALLPLLEDHIVTDLVTCGGCQSAHATAVAVSCAERGLKSHL 171 (334)
Q Consensus 110 yvKrDDl~~p~~gGnK~RkL~~lL~~a~~~g~~~VVt~Gg~qsNh~~AvAaaaa~~Gl~~~i 171 (334)
++.+||-.+|..+-+..|+| + .+.++.-||- +..|-.+.+++-.+++.+++.+.
T Consensus 43 lv~~D~~~~p~~a~~~~~~L---i---~~~~V~aiiG--~~~s~~~~a~~~~~~~~~vp~i~ 96 (334)
T cd06356 43 LVDYDTQSDNERYQQYAQRL---A---LQDKVDVVWG--GISSASREAIRPIMDRTKQLYFY 96 (334)
T ss_pred EEEECCCCCHHHHHHHHHHH---H---HhCCCCEEEe--CcchHHHHHHHHHHHhcCceEEe
Confidence 34566666775565677776 2 2457777763 32333556777778888887654
No 95
>cd01011 nicotinamidase Nicotinamidase/pyrazinamidase (PZase). Nicotinamidase, a ubiquitous enzyme in prokaryotes, converts nicotinamide to nicotinic acid (niacin) and ammonia, which in turn can be recycled to make nicotinamide adenine dinucleotide (NAD). The same enzyme is also called pyrazinamidase, because in converts the tuberculosis drug pyrazinamide (PZA) into its active form pyrazinoic acid (POA).
Probab=51.29 E-value=72 Score=28.56 Aligned_cols=41 Identities=15% Similarity=0.201 Sum_probs=31.6
Q ss_pred HHhcCCCEEEEeCCccchHHH-HHHHHHHHhCCeEEEEeCCCC
Q 019910 136 LEDHIVTDLVTCGGCQSAHAT-AVAVSCAERGLKSHLLLRGEQ 177 (334)
Q Consensus 136 a~~~g~~~VVt~Gg~qsNh~~-AvAaaaa~~Gl~~~ivv~~~~ 177 (334)
.++.|+++|+.||- .+|.++ ++|..|..+|++++++.+...
T Consensus 133 L~~~~i~~lii~G~-~t~~CV~~T~~~a~~~g~~v~v~~Da~~ 174 (196)
T cd01011 133 LRERGIDRVDVVGL-ATDYCVKATALDALKAGFEVRVLEDACR 174 (196)
T ss_pred HHHCCCCEEEEEEe-cccHHHHHHHHHHHHCCCEEEEeccccC
Confidence 35789999998875 667765 667778889999888877644
No 96
>PF11814 DUF3335: Peptidase_C39 like family; InterPro: IPR021770 This family of proteins are functionally uncharacterised. This family is only found in bacteria. This presumed domain is typically between 226 to 230 amino acids in length.
Probab=50.56 E-value=20 Score=33.29 Aligned_cols=43 Identities=19% Similarity=0.255 Sum_probs=33.3
Q ss_pred HhcCCCEEEEeCCccchHHHHHHHHHHHhCCeEEEEeCCCCCc
Q 019910 137 EDHIVTDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGEQPQ 179 (334)
Q Consensus 137 ~~~g~~~VVt~Gg~qsNh~~AvAaaaa~~Gl~~~ivv~~~~p~ 179 (334)
...-+++|...+|-.|.+-.+||.||++.|+++.+++..+.|.
T Consensus 38 lWREATTifmtsGhGGC~P~GLAlAA~rrG~~vev~~~~~~pl 80 (207)
T PF11814_consen 38 LWREATTIFMTSGHGGCGPFGLALAAARRGFKVEVWVSTDGPL 80 (207)
T ss_pred HHHHhceecccCCCCCcChHHHHHHHHHcCCceEEEECCCCCc
Confidence 3456688875554446678899999999999999999886653
No 97
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=50.30 E-value=32 Score=33.45 Aligned_cols=65 Identities=18% Similarity=0.209 Sum_probs=42.7
Q ss_pred CcEEEEcCCCcchhHHHHHHHHHHHHHHhhhcCCCCCCEEEEcCCchhHHHHHHHHHHHcCCCCeEEEEEec
Q 019910 258 KKVLIVNEGAGDAVALLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGLGAICLGCVPLFNTLLVK 329 (334)
Q Consensus 258 ~~~y~IpeGgs~p~a~~G~~~la~EI~eq~~~g~~~~D~Vvvp~GtGgt~aGl~~g~k~lg~~~~VigV~~~ 329 (334)
+.+..|..|-+.--|...+-++..|..++.. .+..-|+++|+|+-+.+++.. .+|.. +|+|+++.
T Consensus 129 ~~~I~idPg~AFGTG~H~TT~lcl~~l~~~~----~~g~~vLDvG~GSGILaiaA~--klGA~-~v~a~DiD 193 (295)
T PF06325_consen 129 EIVIEIDPGMAFGTGHHPTTRLCLELLEKYV----KPGKRVLDVGCGSGILAIAAA--KLGAK-KVVAIDID 193 (295)
T ss_dssp SEEEEESTTSSS-SSHCHHHHHHHHHHHHHS----STTSEEEEES-TTSHHHHHHH--HTTBS-EEEEEESS
T ss_pred cEEEEECCCCcccCCCCHHHHHHHHHHHHhc----cCCCEEEEeCCcHHHHHHHHH--HcCCC-eEEEecCC
Confidence 3455666664444445556778888887762 234578999999999888754 35653 79999863
No 98
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=48.65 E-value=19 Score=34.61 Aligned_cols=32 Identities=22% Similarity=0.279 Sum_probs=24.9
Q ss_pred EEEcCCchhHHHHHHHHHHHcCCCCeEEEEEecc
Q 019910 297 FVVDAGTGTTAVGLGLGAICLGCVPLFNTLLVKL 330 (334)
Q Consensus 297 Vvvp~GtGgt~aGl~~g~k~lg~~~~VigV~~~g 330 (334)
.|+..|||+-+.+++.+. ..+.++|+|++++-
T Consensus 113 ~ilDlGTGSG~iai~la~--~~~~~~V~a~Dis~ 144 (280)
T COG2890 113 RILDLGTGSGAIAIALAK--EGPDAEVIAVDISP 144 (280)
T ss_pred cEEEecCChHHHHHHHHh--hCcCCeEEEEECCH
Confidence 688888888887766554 45789999999863
No 99
>TIGR03669 urea_ABC_arch urea ABC transporter, substrate-binding protein, archaeal type. Members of this protein family are identified as the substrate-binding protein of a urea ABC transport system by similarity to a known urea transporter from Corynebacterium glutamicum, operon structure, proximity of its operons to urease (urea-utilization protein) operons, and by Partial Phylogenetic Profiling vs. urea utilization.
Probab=47.81 E-value=2.8e+02 Score=27.24 Aligned_cols=53 Identities=17% Similarity=0.087 Sum_probs=33.9
Q ss_pred EEeCCCCCCCChhHHHHHHHhhhHHHHhcCCCEEEEeCCccchHHHHHHHHHHHhCCeEEE
Q 019910 111 VVRDDLLHPLVNGNKARKMDALLPLLEDHIVTDLVTCGGCQSAHATAVAVSCAERGLKSHL 171 (334)
Q Consensus 111 vKrDDl~~p~~gGnK~RkL~~lL~~a~~~g~~~VVt~Gg~qsNh~~AvAaaaa~~Gl~~~i 171 (334)
+.+||-..|..+-..+|+| + .+.++.-|+ |+..|..+.|++-.+.+.+++.++
T Consensus 45 v~~D~~~~p~~a~~~a~~l---i---~~d~v~~vi--G~~~S~~~~A~~~~~~~~~~~~i~ 97 (374)
T TIGR03669 45 IDPDPQSDNERYQELTRRL---L---NRDKVDALW--AGYSSATREAIRPIIDRNEQLYFY 97 (374)
T ss_pred EEeCCCCCHHHHHHHHHHH---H---HhCCCCEEE--cCCchHHHHHHHHHHHhcCceEEc
Confidence 4556665664444555554 2 245677666 344567788888889999988754
No 100
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=46.57 E-value=57 Score=30.29 Aligned_cols=32 Identities=25% Similarity=0.310 Sum_probs=20.0
Q ss_pred CEEEEcCCchhHHHHHHHHHHHcCCCCeEEEEEec
Q 019910 295 IKFVVDAGTGTTAVGLGLGAICLGCVPLFNTLLVK 329 (334)
Q Consensus 295 D~Vvvp~GtGgt~aGl~~g~k~lg~~~~VigV~~~ 329 (334)
...|+.+|+|+-...+ .+..++.. +|+|++++
T Consensus 120 ~~~VLDiGcGsG~l~i--~~~~~g~~-~v~giDis 151 (250)
T PRK00517 120 GKTVLDVGCGSGILAI--AAAKLGAK-KVLAVDID 151 (250)
T ss_pred CCEEEEeCCcHHHHHH--HHHHcCCC-eEEEEECC
Confidence 3456667776644443 34455654 79999985
No 101
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=44.56 E-value=29 Score=34.96 Aligned_cols=32 Identities=31% Similarity=0.482 Sum_probs=22.7
Q ss_pred EEEeCCccchHHHHHHHHHHHhCCeEEEEeCCCC
Q 019910 144 LVTCGGCQSAHATAVAVSCAERGLKSHLLLRGEQ 177 (334)
Q Consensus 144 VVt~Gg~qsNh~~AvAaaaa~~Gl~~~ivv~~~~ 177 (334)
||.+|| |=.|.+.|.+|++.|.++.++=+...
T Consensus 2 VVVvGg--G~aG~~AAi~AAr~G~~VlLiE~~~~ 33 (428)
T PF12831_consen 2 VVVVGG--GPAGVAAAIAAARAGAKVLLIEKGGF 33 (428)
T ss_dssp EEEE----SHHHHHHHHHHHHTTS-EEEE-SSSS
T ss_pred EEEECc--cHHHHHHHHHHHHCCCEEEEEECCcc
Confidence 455777 56899999999999999988866543
No 102
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=43.91 E-value=1.3e+02 Score=26.36 Aligned_cols=69 Identities=22% Similarity=0.225 Sum_probs=36.4
Q ss_pred HHHHhhhHHHH--hcCCCEEEEeCCccchH---HHHHHHHHHHhCCeEEEEeCCCC---CccccchhHHHHHCC-eEEEE
Q 019910 127 RKMDALLPLLE--DHIVTDLVTCGGCQSAH---ATAVAVSCAERGLKSHLLLRGEQ---PQILTGYNLISTIYG-KVTYV 197 (334)
Q Consensus 127 RkL~~lL~~a~--~~g~~~VVt~Gg~qsNh---~~AvAaaaa~~Gl~~~ivv~~~~---p~~~~gn~~~~~~~G-~V~~v 197 (334)
|.+...+.... ....+-+|-||. ||. |.++|.+-+..|+++++++-... ++...-+..+.+.+| .++..
T Consensus 10 ~~~a~~i~~~~~~~~~~~v~il~G~--GnNGgDgl~~AR~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 87 (169)
T PF03853_consen 10 RAIAELIRKLFGSPKGPRVLILCGP--GNNGGDGLVAARHLANRGYNVTVYLVGPPEKLSEDAKQQLEILKKMGIKIIEL 87 (169)
T ss_dssp HHHHHHHHHHSTCCTT-EEEEEE-S--SHHHHHHHHHHHHHHHTTCEEEEEEEESSSSTSHHHHHHHHHHHHTT-EEESS
T ss_pred HHHHHHHHHHhcccCCCeEEEEECC--CCChHHHHHHHHHHHHCCCeEEEEEEeccccCCHHHHHHHHHHHhcCCcEeec
Confidence 44444444323 334455667886 565 45556667779999999554322 122222444566677 55443
No 103
>PRK13886 conjugal transfer protein TraL; Provisional
Probab=43.28 E-value=2.9e+02 Score=26.09 Aligned_cols=63 Identities=24% Similarity=0.209 Sum_probs=37.6
Q ss_pred EEEEcCCCcchhHHHHH--HHHHHHHHHhhhcCCCCCCEEEEcCCch----hHHHHHHHHHHHcCCCCeEEEE
Q 019910 260 VLIVNEGAGDAVALLGV--FRLLQYLSQDHLLGRKRAIKFVVDAGTG----TTAVGLGLGAICLGCVPLFNTL 326 (334)
Q Consensus 260 ~y~IpeGgs~p~a~~G~--~~la~EI~eq~~~g~~~~D~Vvvp~GtG----gt~aGl~~g~k~lg~~~~VigV 326 (334)
..+|-.|+++..+...| ..-..|+.++. |+. ..+..++-+| -|+.|+..-+..++..++++.+
T Consensus 83 dvIIDngAs~~~~l~~yl~~n~l~~ll~e~--g~~--lvvh~vi~gg~~~~dtl~~~~~l~~~~~~~~~~Vvw 151 (241)
T PRK13886 83 DVIIDNGASSFVPLSHYLISNQVPALLQDM--GHE--LVVHTVVTGGQALLDTVSGFAQLASQFPAECLFVVW 151 (241)
T ss_pred CEEEECCCcchHHHHHHHHhCcHHHHHHHC--Cce--EEEEEEECCCcccHHHHHHHHHHHHHcCCCceEEEE
Confidence 36677888888888777 23344666654 432 2233344444 5788877666666556666553
No 104
>cd06317 PBP1_ABC_sugar_binding_like_8 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Pperiplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=42.15 E-value=2.5e+02 Score=25.05 Aligned_cols=35 Identities=14% Similarity=-0.152 Sum_probs=27.4
Q ss_pred CCCEEEEcCCchhHHHHHHHHHHHcCC--CCeEEEEEec
Q 019910 293 RAIKFVVDAGTGTTAVGLGLGAICLGC--VPLFNTLLVK 329 (334)
Q Consensus 293 ~~D~Vvvp~GtGgt~aGl~~g~k~lg~--~~~VigV~~~ 329 (334)
.+|.||+ ++...+.|+..+++..|. ++.|+|.+-.
T Consensus 187 ~~~ai~~--~~d~~a~g~~~~l~~~g~~~dv~v~g~d~~ 223 (275)
T cd06317 187 DIDGVYA--GDDNMARGALNAAKEAGLAGGIVIVGANNF 223 (275)
T ss_pred CccEEEE--CCCcHHHHHHHHHHhcCCcCCcEEEEeCCC
Confidence 4788885 445568899999999997 7899988753
No 105
>PTZ00331 alpha/beta hydrolase; Provisional
Probab=41.59 E-value=1.2e+02 Score=27.65 Aligned_cols=40 Identities=20% Similarity=0.275 Sum_probs=31.3
Q ss_pred HhcCCCEEEEeCCccchHHH-HHHHHHHHhCCeEEEEeCCCC
Q 019910 137 EDHIVTDLVTCGGCQSAHAT-AVAVSCAERGLKSHLLLRGEQ 177 (334)
Q Consensus 137 ~~~g~~~VVt~Gg~qsNh~~-AvAaaaa~~Gl~~~ivv~~~~ 177 (334)
++.|+++|+.||- .+|+++ ++|.-+..+|.+++++.....
T Consensus 142 ~~~gi~~lvi~G~-~t~~CV~~Ta~~a~~~g~~v~vv~Da~~ 182 (212)
T PTZ00331 142 KAHGVRRVFICGL-AFDFCVLFTALDAVKLGFKVVVLEDATR 182 (212)
T ss_pred HHCCCCEEEEEEe-ccCHHHHHHHHHHHHCCCEEEEeCcCcc
Confidence 4679999998875 567765 567778899999988877644
No 106
>cd01012 YcaC_related YcaC related amidohydrolases; E.coli YcaC is an homooctameric hydrolase with unknown specificity. Despite its weak sequence similarity, it is structurally related to other amidohydrolases and shares conserved active site residues with them. Multimerisation interface seems not to be conserved in all members.
Probab=40.13 E-value=1.1e+02 Score=26.18 Aligned_cols=41 Identities=12% Similarity=0.106 Sum_probs=31.9
Q ss_pred HhcCCCEEEEeCCccchHH-HHHHHHHHHhCCeEEEEeCCCCC
Q 019910 137 EDHIVTDLVTCGGCQSAHA-TAVAVSCAERGLKSHLLLRGEQP 178 (334)
Q Consensus 137 ~~~g~~~VVt~Gg~qsNh~-~AvAaaaa~~Gl~~~ivv~~~~p 178 (334)
++.|.++||.||- ..|.+ .++|..|..+|++++++.+....
T Consensus 84 ~~~gi~~lii~G~-~T~~CV~~Ta~~a~~~g~~v~v~~Da~as 125 (157)
T cd01012 84 KATGRKQVVLAGL-ETHVCVLQTALDLLEEGYEVFVVADACGS 125 (157)
T ss_pred HhcCCCEEEEEEe-eccHHHHHHHHHHHHCCCEEEEEeeCCCC
Confidence 4789999998875 55655 57778899999999998877443
No 107
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=39.70 E-value=34 Score=33.70 Aligned_cols=31 Identities=35% Similarity=0.501 Sum_probs=23.4
Q ss_pred EEEeCCccchHHHHHHHHHHHhCCeEEEEeCCC
Q 019910 144 LVTCGGCQSAHATAVAVSCAERGLKSHLLLRGE 176 (334)
Q Consensus 144 VVt~Gg~qsNh~~AvAaaaa~~Gl~~~ivv~~~ 176 (334)
||.+|+ |..+.+.|..|++.|.+++++=...
T Consensus 2 VvVIG~--G~AGl~AA~~Aae~G~~V~lvek~~ 32 (417)
T PF00890_consen 2 VVVIGG--GLAGLAAAIEAAEAGAKVLLVEKGP 32 (417)
T ss_dssp EEEE-S--SHHHHHHHHHHHHTTT-EEEEESSS
T ss_pred EEEECC--CHHHHHHHHHHhhhcCeEEEEEeec
Confidence 444776 8899999999999999888776553
No 108
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=38.87 E-value=52 Score=35.19 Aligned_cols=33 Identities=39% Similarity=0.550 Sum_probs=25.7
Q ss_pred CCCEEEEeCCccchHHHHHHHHHHHhCCeEEEEeCC
Q 019910 140 IVTDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRG 175 (334)
Q Consensus 140 g~~~VVt~Gg~qsNh~~AvAaaaa~~Gl~~~ivv~~ 175 (334)
.++.|| .|| |-.|.++|+.+++.|+++.++=..
T Consensus 71 ~~DVvV-IGG--Gi~Ga~~A~~lA~rGl~V~LvE~~ 103 (627)
T PLN02464 71 PLDVLV-VGG--GATGAGVALDAATRGLRVGLVERE 103 (627)
T ss_pred ccCEEE-ECC--CHHHHHHHHHHHhCCCEEEEEecc
Confidence 355555 777 779999999999999997666444
No 109
>PRK12743 oxidoreductase; Provisional
Probab=37.58 E-value=3.1e+02 Score=24.73 Aligned_cols=32 Identities=19% Similarity=0.258 Sum_probs=24.5
Q ss_pred CEEEEeCCccchHHHHHHHHHHHhCCeEEEEeCC
Q 019910 142 TDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRG 175 (334)
Q Consensus 142 ~~VVt~Gg~qsNh~~AvAaaaa~~Gl~~~ivv~~ 175 (334)
+.+| .|+ .|.-|.++|...++.|.+.+++.+.
T Consensus 4 ~vlI-tGa-s~giG~~~a~~l~~~G~~V~~~~~~ 35 (256)
T PRK12743 4 VAIV-TAS-DSGIGKACALLLAQQGFDIGITWHS 35 (256)
T ss_pred EEEE-ECC-CchHHHHHHHHHHHCCCEEEEEeCC
Confidence 3445 565 5789999999999999988776554
No 110
>PF06415 iPGM_N: BPG-independent PGAM N-terminus (iPGM_N); InterPro: IPR011258 This family represents the N-terminal region of the 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (or phosphoglyceromutase or BPG-independent PGAM) protein (5.4.2.1 from EC). The family is found in conjunction with Metalloenzyme (located in the C-terminal region of the protein). ; GO: 0004619 phosphoglycerate mutase activity, 0030145 manganese ion binding, 0006007 glucose catabolic process, 0005737 cytoplasm; PDB: 1EQJ_A 1EJJ_A 1O99_A 1O98_A 3IGZ_B 3IGY_B 3NVL_A 2IFY_A.
Probab=37.26 E-value=84 Score=29.48 Aligned_cols=49 Identities=20% Similarity=0.259 Sum_probs=32.5
Q ss_pred HHHhhhHHHHhcCC----CEEEEeCCccc--hHHHHHHHHHHHhCCe---EEEEeCCC
Q 019910 128 KMDALLPLLEDHIV----TDLVTCGGCQS--AHATAVAVSCAERGLK---SHLLLRGE 176 (334)
Q Consensus 128 kL~~lL~~a~~~g~----~~VVt~Gg~qs--Nh~~AvAaaaa~~Gl~---~~ivv~~~ 176 (334)
.+..++..++..+. -++++-||..| +|..+++-.|++.|++ .|+|+.+.
T Consensus 15 ~l~~~~~~~k~~~~~lHl~GLlSdGGVHSh~~Hl~al~~~a~~~gv~~V~vH~f~DGR 72 (223)
T PF06415_consen 15 VLLEAIEHAKKNGGRLHLMGLLSDGGVHSHIDHLFALIKLAKKQGVKKVYVHAFTDGR 72 (223)
T ss_dssp HHHHHHHHHCCTT--EEEEEEESS-SSS--HHHHHHHHHHHHHTT-SEEEEEEEE-SS
T ss_pred HHHHHHHHHHhcCCeEEEEEEecCCCccccHHHHHHHHHHHHHcCCCEEEEEEecCCC
Confidence 35555666655443 35667787665 6899999999999987 78999873
No 111
>TIGR00670 asp_carb_tr aspartate carbamoyltransferase. Ornithine carbamoyltransferases are in the same superfamily and form an outgroup.
Probab=37.18 E-value=2.7e+02 Score=27.04 Aligned_cols=36 Identities=14% Similarity=0.178 Sum_probs=29.3
Q ss_pred CEEEEeCCcc-chHHHHHHHHHHHhCCeEEEEeCCCC
Q 019910 142 TDLVTCGGCQ-SAHATAVAVSCAERGLKSHLLLRGEQ 177 (334)
Q Consensus 142 ~~VVt~Gg~q-sNh~~AvAaaaa~~Gl~~~ivv~~~~ 177 (334)
.+|.-+|-.- +|-+++++.+++++|++++++.|...
T Consensus 151 ~~va~vGD~~~~~v~~Sl~~~~a~~g~~v~~~~P~~~ 187 (301)
T TIGR00670 151 LKIALVGDLKYGRTVHSLAEALTRFGVEVYLISPEEL 187 (301)
T ss_pred CEEEEEccCCCCcHHHHHHHHHHHcCCEEEEECCccc
Confidence 3555566532 79999999999999999999999864
No 112
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=36.28 E-value=87 Score=31.06 Aligned_cols=42 Identities=12% Similarity=0.033 Sum_probs=32.0
Q ss_pred HHHHhcCCCEEEEeCCccchHHHHHHHHHHHhCCeEEEEeCCCC
Q 019910 134 PLLEDHIVTDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGEQ 177 (334)
Q Consensus 134 ~~a~~~g~~~VVt~Gg~qsNh~~AvAaaaa~~Gl~~~ivv~~~~ 177 (334)
...++...+-||.+|+...|.. +|.+|+.+|++++++++++.
T Consensus 83 ~~l~~~kPd~vi~~g~~~~~~~--~a~aa~~~gip~v~~i~P~~ 124 (385)
T TIGR00215 83 QLAKQAKPDLLVGIDAPDFNLT--KELKKKDPGIKIIYYISPQV 124 (385)
T ss_pred HHHHhcCCCEEEEeCCCCccHH--HHHHHhhCCCCEEEEeCCcH
Confidence 3356778899999998655654 56778999999999986653
No 113
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=35.43 E-value=55 Score=28.39 Aligned_cols=33 Identities=27% Similarity=0.401 Sum_probs=26.5
Q ss_pred CEEEEeCCccchHHHHHHHHHHHhCCeEEEEeCCC
Q 019910 142 TDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGE 176 (334)
Q Consensus 142 ~~VVt~Gg~qsNh~~AvAaaaa~~Gl~~~ivv~~~ 176 (334)
+.|+-.|+ ||.|.-+|...++.|-+.++++|..
T Consensus 168 k~V~VVG~--G~SA~d~a~~l~~~g~~V~~~~R~~ 200 (203)
T PF13738_consen 168 KRVVVVGG--GNSAVDIAYALAKAGKSVTLVTRSP 200 (203)
T ss_dssp SEEEEE----SHHHHHHHHHHTTTCSEEEEEESS-
T ss_pred CcEEEEcC--hHHHHHHHHHHHhhCCEEEEEecCC
Confidence 56666887 8999999999999999999999863
No 114
>COG0503 Apt Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins [Nucleotide transport and metabolism]
Probab=35.40 E-value=1.1e+02 Score=27.29 Aligned_cols=42 Identities=19% Similarity=0.194 Sum_probs=28.3
Q ss_pred HhhhHHHHhcCCCEEEEeCCccchHHHHH-HHHHHHhCCeEEEEeCC
Q 019910 130 DALLPLLEDHIVTDLVTCGGCQSAHATAV-AVSCAERGLKSHLLLRG 175 (334)
Q Consensus 130 ~~lL~~a~~~g~~~VVt~Gg~qsNh~~Av-Aaaaa~~Gl~~~ivv~~ 175 (334)
..+.....+.+.+.||+.-+ -|..+ ++.|.++|++++++-..
T Consensus 43 ~~~~~~~~~~~id~Iv~iea----~Gi~~a~~vA~~Lgvp~v~vRK~ 85 (179)
T COG0503 43 DELAERYKDDGIDKIVTIEA----RGIPLAAAVALELGVPFVPVRKK 85 (179)
T ss_pred HHHHHHhcccCCCEEEEEcc----ccchhHHHHHHHhCCCEEEEEec
Confidence 35556667788999997543 22333 45588999999887654
No 115
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=34.75 E-value=97 Score=26.88 Aligned_cols=47 Identities=23% Similarity=0.255 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHhhhcCCCCCCEEEEcCCchhHHHHHHHHHHHcCCCCeEEEEEec
Q 019910 274 LGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGLGAICLGCVPLFNTLLVK 329 (334)
Q Consensus 274 ~G~~~la~EI~eq~~~g~~~~D~Vvvp~GtGgt~aGl~~g~k~lg~~~~VigV~~~ 329 (334)
.|+.-+...+... ...-|+..|+|+-+.++..+ ..++..+|++||+.
T Consensus 18 ~~t~lL~~~l~~~-------~~~~vLDlG~G~G~i~~~la--~~~~~~~v~~vDi~ 64 (170)
T PF05175_consen 18 AGTRLLLDNLPKH-------KGGRVLDLGCGSGVISLALA--KRGPDAKVTAVDIN 64 (170)
T ss_dssp HHHHHHHHHHHHH-------TTCEEEEETSTTSHHHHHHH--HTSTCEEEEEEESB
T ss_pred HHHHHHHHHHhhc-------cCCeEEEecCChHHHHHHHH--HhCCCCEEEEEcCC
Confidence 4554455444443 23347777887777777654 45788899999975
No 116
>PRK06847 hypothetical protein; Provisional
Probab=34.62 E-value=55 Score=31.55 Aligned_cols=32 Identities=16% Similarity=0.302 Sum_probs=25.7
Q ss_pred CEEEEeCCccchHHHHHHHHHHHhCCeEEEEeCC
Q 019910 142 TDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRG 175 (334)
Q Consensus 142 ~~VVt~Gg~qsNh~~AvAaaaa~~Gl~~~ivv~~ 175 (334)
..|+-.|| |-.|.++|.++++.|++++|+=+.
T Consensus 5 ~~V~IVGa--G~aGl~~A~~L~~~g~~v~v~E~~ 36 (375)
T PRK06847 5 KKVLIVGG--GIGGLSAAIALRRAGIAVDLVEID 36 (375)
T ss_pred ceEEEECC--CHHHHHHHHHHHhCCCCEEEEecC
Confidence 34555776 779999999999999999888544
No 117
>TIGR03614 RutB pyrimidine utilization protein B. RL Proc Natl Acad Sci U S A. 2006 Mar 28;103(13):5114-9. Epub 2006 Mar 15.
Probab=34.58 E-value=89 Score=28.65 Aligned_cols=40 Identities=10% Similarity=-0.014 Sum_probs=32.0
Q ss_pred HhcCCCEEEEeCCccchH-HHHHHHHHHHhCCeEEEEeCCCC
Q 019910 137 EDHIVTDLVTCGGCQSAH-ATAVAVSCAERGLKSHLLLRGEQ 177 (334)
Q Consensus 137 ~~~g~~~VVt~Gg~qsNh-~~AvAaaaa~~Gl~~~ivv~~~~ 177 (334)
++.|+++||.+|- ..|. ..++|.-|..+|++++++-+...
T Consensus 147 r~~gI~~lvi~Gv-~T~~CV~sTar~A~~~Gy~v~vv~Da~a 187 (226)
T TIGR03614 147 RARGIRNLVFTGI-ATNVCVESTLRDGFHLEYFGVVLEDATH 187 (226)
T ss_pred HHCCCCEEEEecc-CccHhHHHHHHHHHHCCCEEEEechhcc
Confidence 5799999998875 4555 45778889999999999987644
No 118
>PF02887 PK_C: Pyruvate kinase, alpha/beta domain; InterPro: IPR015795 Pyruvate kinase (2.7.1.40 from EC) (PK) catalyses the final step in glycolysis [], the conversion of phosphoenolpyruvate to pyruvate with concomitant phosphorylation of ADP to ATP: ADP + phosphoenolpyruvate = ATP + pyruvate The enzyme, which is found in all living organisms, requires both magnesium and potassium ions for its activity. In vertebrates, there are four tissue-specific isozymes: L (liver), R (red cells), M1 (muscle, heart and brain), and M2 (early foetal tissue). In plants, PK exists as cytoplasmic and plastid isozymes, while most bacteria and lower eukaryotes have one form, except in certain bacteria, such as Escherichia coli, that have two isozymes. All isozymes appear to be tetramers of identical subunits of ~500 residues. PK helps control the rate of glycolysis, along with phosphofructokinase (IPR000023 from INTERPRO) and hexokinase (IPR001312 from INTERPRO). PK possesses allosteric sites for numerous effectors, yet the isozymes respond differently, in keeping with their different tissue distributions []. The activity of L-type (liver) PK is increased by fructose-1,6-bisphosphate (F1,6BP) and lowered by ATP and alanine (gluconeogenic precursor), therefore when glucose levels are high, glycolysis is promoted, and when levels are low, gluconeogenesis is promoted. L-type PK is also hormonally regulated, being activated by insulin and inhibited by glucagon, which covalently modifies the PK enzyme. M1-type (muscle, brain) PK is inhibited by ATP, but F1,6BP and alanine have no effect, which correlates with the function of muscle and brain, as opposed to the liver. The structure of several pyruvate kinases from various organisms have been determined [, ]. The protein comprises three-four domains: a small N-terminal helical domain (absent in bacterial PK), a beta/alpha-barrel domain, a beta-barrel domain (inserted within the beta/alpha-barrel domain), and a 3-layer alpha/beta/alpha sandwich domain. This entry represents the 3-layer alpha/beta/alpha sandwich domain. This domain has a similar topology to the archaeal hypothetical protein, MTH1675 from Methanobacterium thermoautotrophicum.; PDB: 3QTG_B 1VP8_A 1T57_C 3N25_A 1AQF_C 2G50_B 1F3X_G 1A5U_F 1A49_E 1F3W_C ....
Probab=34.31 E-value=1.3e+02 Score=24.45 Aligned_cols=42 Identities=19% Similarity=0.014 Sum_probs=31.3
Q ss_pred HHHHHHHhhhcCCCCCCEEEEcCCchhHHHHHHHHHHHcCCCCeEEEEEec
Q 019910 279 LLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGLGAICLGCVPLFNTLLVK 329 (334)
Q Consensus 279 la~EI~eq~~~g~~~~D~Vvvp~GtGgt~aGl~~g~k~lg~~~~VigV~~~ 329 (334)
.+.++++++ ....|||.+-||.|+--++ .+.|+..|++|...
T Consensus 7 aa~~~A~~~-----~ak~Ivv~T~sG~ta~~is----k~RP~~pIiavt~~ 48 (117)
T PF02887_consen 7 AAVELAEDL-----NAKAIVVFTESGRTARLIS----KYRPKVPIIAVTPN 48 (117)
T ss_dssp HHHHHHHHH-----TESEEEEE-SSSHHHHHHH----HT-TSSEEEEEESS
T ss_pred HHHHHHHhc-----CCCEEEEECCCchHHHHHH----hhCCCCeEEEEcCc
Confidence 566777776 3578999999999876655 57799999999764
No 119
>COG0078 ArgF Ornithine carbamoyltransferase [Amino acid transport and metabolism]
Probab=34.00 E-value=1.7e+02 Score=28.89 Aligned_cols=65 Identities=15% Similarity=0.151 Sum_probs=45.2
Q ss_pred CCeEEEEeCCCCCCCChhHHHHHHHhhhHHHHhcC---CCEEEEeCCccchHHHHHHHHHHHhCCeEEEEeCCCC
Q 019910 106 DRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHI---VTDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGEQ 177 (334)
Q Consensus 106 g~~lyvKrDDl~~p~~gGnK~RkL~~lL~~a~~~g---~~~VVt~Gg~qsNh~~AvAaaaa~~Gl~~~ivv~~~~ 177 (334)
++.||==.-|..||+ --|.-++.--+..| -.+++.+|-. -|-+.++-.+|+++|+++++..|...
T Consensus 121 ~VPViNgLtD~~HP~------Q~LADl~Ti~E~~g~l~g~k~a~vGDg-NNv~nSl~~~~a~~G~dv~ia~Pk~~ 188 (310)
T COG0078 121 GVPVINGLTDEFHPC------QALADLMTIKEHFGSLKGLKLAYVGDG-NNVANSLLLAAAKLGMDVRIATPKGY 188 (310)
T ss_pred CCceEcccccccCcH------HHHHHHHHHHHhcCcccCcEEEEEcCc-chHHHHHHHHHHHhCCeEEEECCCcC
Confidence 444665566777883 23433343333443 2567777775 78899999999999999999999854
No 120
>PF04198 Sugar-bind: Putative sugar-binding domain; InterPro: IPR007324 This probable domain is found in bacterial transcriptional regulators such as DeoR and SorC. One of these proteins, Q8U7I7 from SWISSPROT, has an N-terminal helix-turn-helix IPR000792 from INTERPRO that binds to DNA. This domain is probably the ligand regulator binding region. SorC is regulated by sorbose and other members of this family are likely to be regulated by other sugar substrates.; GO: 0030246 carbohydrate binding; PDB: 3KV1_A 3EFB_C 2W48_A 3BXH_A 3BXE_A 2OKG_A 3BXF_A 3BXG_A 2R5F_A 2O0M_A ....
Probab=33.97 E-value=1.4e+02 Score=28.17 Aligned_cols=69 Identities=16% Similarity=0.080 Sum_probs=41.5
Q ss_pred CcEEEEcCCCcchhHHHHHHHHHHHHH-HhhhcCCCCCCEEEEcCCchhHHHHHHHHHHHcCCCCeEEEEEeccCCC
Q 019910 258 KKVLIVNEGAGDAVALLGVFRLLQYLS-QDHLLGRKRAIKFVVDAGTGTTAVGLGLGAICLGCVPLFNTLLVKLSRG 333 (334)
Q Consensus 258 ~~~y~IpeGgs~p~a~~G~~~la~EI~-eq~~~g~~~~D~Vvvp~GtGgt~aGl~~g~k~lg~~~~VigV~~~gs~~ 333 (334)
.+.+++|....+..........+.+.. +.+ ..+. ++.+|.|.|+.-++..+.. .....+.-|.+.|+.+
T Consensus 20 k~~~Vv~~~~~~~~~~~~l~~~aA~~L~~~l-----~~~~-~iGv~wG~Tl~~~~~~l~~-~~~~~~~vV~l~Gg~~ 89 (255)
T PF04198_consen 20 KEVIVVPSPSDDEDILESLGEAAAEYLSELL-----KDGD-VIGVGWGRTLYAVANHLPP-KSLPNVTVVPLIGGVG 89 (255)
T ss_dssp SEEEEESSSTTTHHHHHHHHHHHHHHHHHH-------TTE-EEEE-TSHHHHHHHHTS---SSSSCEEEEESBSBTT
T ss_pred CEEEEecCCCChHHHHHHHHHHHHHHHHHhC-----CCCC-EEEEcchHHHHHHHHhcCc-cCCCCcEEEECCCCCC
Confidence 477888877654222222223444443 433 1233 8899999999999988877 5566778888888753
No 121
>PRK15404 leucine ABC transporter subunit substrate-binding protein LivK; Provisional
Probab=33.67 E-value=4.6e+02 Score=25.52 Aligned_cols=35 Identities=11% Similarity=-0.208 Sum_probs=25.5
Q ss_pred CCCEEEEcCCchhHHHHHHHHHHHcCCCCeEEEEEe
Q 019910 293 RAIKFVVDAGTGTTAVGLGLGAICLGCVPLFNTLLV 328 (334)
Q Consensus 293 ~~D~Vvvp~GtGgt~aGl~~g~k~lg~~~~VigV~~ 328 (334)
.+|.|++. |.+..++-+++.++..|...++++...
T Consensus 216 ~~d~v~~~-~~~~~~~~~~k~~~~~G~~~~~i~~~~ 250 (369)
T PRK15404 216 NVDFVYYG-GYHPEMGQILRQAREAGLKTQFMGPEG 250 (369)
T ss_pred CCCEEEEC-CCchHHHHHHHHHHHCCCCCeEEecCc
Confidence 47887764 444556668889999998888887643
No 122
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=33.64 E-value=58 Score=25.36 Aligned_cols=30 Identities=17% Similarity=0.099 Sum_probs=20.6
Q ss_pred EEEcCCchhHHHHHHHHHHHcCCCCeEEEEEecc
Q 019910 297 FVVDAGTGTTAVGLGLGAICLGCVPLFNTLLVKL 330 (334)
Q Consensus 297 Vvvp~GtGgt~aGl~~g~k~lg~~~~VigV~~~g 330 (334)
+-+.+|+|....-++. ..+..+|+||+++.
T Consensus 6 LDlGcG~G~~~~~l~~----~~~~~~v~gvD~s~ 35 (112)
T PF12847_consen 6 LDLGCGTGRLSIALAR----LFPGARVVGVDISP 35 (112)
T ss_dssp EEETTTTSHHHHHHHH----HHTTSEEEEEESSH
T ss_pred EEEcCcCCHHHHHHHh----cCCCCEEEEEeCCH
Confidence 5566667666555554 45788999999853
No 123
>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....
Probab=33.26 E-value=69 Score=27.92 Aligned_cols=34 Identities=15% Similarity=0.154 Sum_probs=28.4
Q ss_pred EEEEeCCccchHHHHHHHHHHHhCCeEEEEeCCC
Q 019910 143 DLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGE 176 (334)
Q Consensus 143 ~VVt~Gg~qsNh~~AvAaaaa~~Gl~~~ivv~~~ 176 (334)
+|+.+|-..+|.+++++.+|+++|+..+++.|..
T Consensus 4 ~i~~vGD~~~rv~~Sl~~~~~~~g~~~~~~~P~~ 37 (158)
T PF00185_consen 4 KIAYVGDGHNRVAHSLIELLAKFGMEVVLIAPEG 37 (158)
T ss_dssp EEEEESSTTSHHHHHHHHHHHHTTSEEEEESSGG
T ss_pred EEEEECCCCChHHHHHHHHHHHcCCEEEEECCCc
Confidence 3454665458999999999999999999998886
No 124
>cd06305 PBP1_methylthioribose_binding_like Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. The sugar-binding domain of the periplasmic proteins in this group is also homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR), DNA-binding transcriptional repressors such as LacI and GalR.
Probab=33.08 E-value=3.6e+02 Score=24.09 Aligned_cols=32 Identities=9% Similarity=-0.183 Sum_probs=24.9
Q ss_pred CEEEEcCCchhHHHHHHHHHHHcCCC--CeEEEEEe
Q 019910 295 IKFVVDAGTGTTAVGLGLGAICLGCV--PLFNTLLV 328 (334)
Q Consensus 295 D~Vvvp~GtGgt~aGl~~g~k~lg~~--~~VigV~~ 328 (334)
+.|++. +..++.|+..+++..|.. +.|+|++-
T Consensus 185 ~ai~~~--~d~~a~g~~~~l~~~g~~~di~iig~d~ 218 (273)
T cd06305 185 DAIWAA--WDEFAKGAKQALDEAGRTDEIKIYGVDI 218 (273)
T ss_pred CeEEEc--ChhhhHHHHHHHHHcCCCCCceEEEecC
Confidence 777765 566788999999999975 77888763
No 125
>cd01014 nicotinamidase_related Nicotinamidase_ related amidohydrolases. Cysteine hydrolases of unknown function that share the catalytic triad with other amidohydrolases, like nicotinamidase, which converts nicotinamide to nicotinic acid and ammonia.
Probab=33.05 E-value=99 Score=26.38 Aligned_cols=42 Identities=17% Similarity=0.263 Sum_probs=32.5
Q ss_pred HHhcCCCEEEEeCCccchHHHHHHHHHHHhCCeEEEEeCCCC
Q 019910 136 LEDHIVTDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGEQ 177 (334)
Q Consensus 136 a~~~g~~~VVt~Gg~qsNh~~AvAaaaa~~Gl~~~ivv~~~~ 177 (334)
.++.|.++|+-+|-.+..-..++|.-|..+|++++++.....
T Consensus 94 L~~~gi~~viv~G~~td~CV~~Ta~~a~~~g~~v~vi~Da~~ 135 (155)
T cd01014 94 LREAGIDHLVICGAMTEMCVDTTVRSAFDLGYDVTVVADACA 135 (155)
T ss_pred HHHCCCCEEEEEeeccchhHHHHHHHHHHCCCcEEEeccccc
Confidence 357899999988865444566888899999999988776543
No 126
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=32.75 E-value=82 Score=30.82 Aligned_cols=65 Identities=20% Similarity=0.051 Sum_probs=36.4
Q ss_pred EEcCCCcch--hHHHHHHHHHHHHHHhhhcCCCCCCEEEEcCCchhHHHHHHHHHHHcCCCCeEEEEEec
Q 019910 262 IVNEGAGDA--VALLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGLGAICLGCVPLFNTLLVK 329 (334)
Q Consensus 262 ~IpeGgs~p--~a~~G~~~la~EI~eq~~~g~~~~D~Vvvp~GtGgt~aGl~~g~k~lg~~~~VigV~~~ 329 (334)
-||+|.-.| -+-+-|..+..+|+.....+ ..-...++++|||.....=.+|.+.. .|+++|.++.
T Consensus 69 diP~~~LcP~iP~R~nYi~~i~DlL~~~~~~-~~~~v~glDIGTGAscIYpLLg~~~~--~W~fvaTdID 135 (299)
T PF05971_consen 69 DIPEGRLCPPIPNRLNYIHWIADLLASSNPG-IPEKVRGLDIGTGASCIYPLLGAKLY--GWSFVATDID 135 (299)
T ss_dssp ---TTS----HHHHHHHHHHHHHHHT--TCG-CS---EEEEES-TTTTHHHHHHHHHH----EEEEEES-
T ss_pred cCCCCCcCCCCchhHHHHHHHHHHhhccccc-cccceEeecCCccHHHHHHHHhhhhc--CCeEEEecCC
Confidence 467765543 23455766667776543211 11156899999999999988998886 6999999874
No 127
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=32.25 E-value=54 Score=33.93 Aligned_cols=32 Identities=31% Similarity=0.384 Sum_probs=25.7
Q ss_pred CCEEEEeCCccchHHHHHHHHHHHhCCeEEEEeCC
Q 019910 141 VTDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRG 175 (334)
Q Consensus 141 ~~~VVt~Gg~qsNh~~AvAaaaa~~Gl~~~ivv~~ 175 (334)
.+.|| .|| |-.|.++|..+++.|+++.++=..
T Consensus 7 ~DVvI-IGG--Gi~G~~~A~~la~rGl~V~LvEk~ 38 (508)
T PRK12266 7 YDLLV-IGG--GINGAGIARDAAGRGLSVLLCEQD 38 (508)
T ss_pred CCEEE-ECc--CHHHHHHHHHHHHCCCeEEEEecC
Confidence 45455 777 779999999999999998777554
No 128
>cd01015 CSHase N-carbamoylsarcosine amidohydrolase (CSHase) hydrolyzes N-carbamoylsarcosine to sarcosine, carbon dioxide and ammonia. CSHase is involved in one of the two alternative pathways for creatinine degradation to glycine in microorganisms.This CSHase-containing pathway degrades creatinine via N-methylhydantoin N-carbamoylsarcosine and sarcosine to glycine. Enzymes of this pathway are used in the diagnosis for renal disfunction, for determining creatinine levels in urine and serum.
Probab=32.24 E-value=1.1e+02 Score=26.83 Aligned_cols=40 Identities=18% Similarity=0.250 Sum_probs=31.7
Q ss_pred HhcCCCEEEEeCCccchHHH-HHHHHHHHhCCeEEEEeCCCC
Q 019910 137 EDHIVTDLVTCGGCQSAHAT-AVAVSCAERGLKSHLLLRGEQ 177 (334)
Q Consensus 137 ~~~g~~~VVt~Gg~qsNh~~-AvAaaaa~~Gl~~~ivv~~~~ 177 (334)
++.|+++||-+|- ..|.++ ++|..|..+|++++++-....
T Consensus 110 ~~~gi~~vvi~G~-~t~~CV~~Ta~~A~~~Gy~v~vv~Da~a 150 (179)
T cd01015 110 TARGVDTLIVAGC-STSGCIRATAVDAMQHGFRPIVVRECVG 150 (179)
T ss_pred HHcCCCEEEEeee-cccHhHHHHHHHHHHCCCeEEEeecccc
Confidence 5789999997775 566665 788889999999988876643
No 129
>PRK11041 DNA-binding transcriptional regulator CytR; Provisional
Probab=32.08 E-value=1.2e+02 Score=27.92 Aligned_cols=34 Identities=12% Similarity=-0.066 Sum_probs=26.0
Q ss_pred CCCEEEEcCCchhHHHHHHHHHHHcCC----CCeEEEEEe
Q 019910 293 RAIKFVVDAGTGTTAVGLGLGAICLGC----VPLFNTLLV 328 (334)
Q Consensus 293 ~~D~Vvvp~GtGgt~aGl~~g~k~lg~----~~~VigV~~ 328 (334)
.||.||++ +...+.|+..++++.|. ++.|+|++-
T Consensus 213 ~~~ai~~~--~d~~a~gv~~al~~~g~~ip~di~vvg~D~ 250 (309)
T PRK11041 213 PPTAVFCH--SDVMALGALSQAKRMGLRVPQDLSIIGFDD 250 (309)
T ss_pred CCCEEEEc--CcHHHHHHHHHHHHcCCCCCcceEEEEeCC
Confidence 58888864 56677799999999885 567888764
No 130
>PF00857 Isochorismatase: Isochorismatase family; InterPro: IPR000868 This is a family of hydrolase enzymes. Isochorismatase, also known as 2,3 dihydro-2,3 dihydroxybenzoate synthase catalyses the conversion of isochorismate, in the presence of water, to 2,3-dihydroxybenzoate and pyruvate (3.3.2.1 from EC).; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1XN4_A 3KL2_F 1YZV_A 3IRV_A 1IM5_A 1ILW_A 3PL1_A 1NF9_A 1NF8_A 1X9G_A ....
Probab=32.01 E-value=85 Score=26.81 Aligned_cols=39 Identities=18% Similarity=0.315 Sum_probs=29.8
Q ss_pred HHhcCCCEEEEeCCccchHH-HHHHHHHHHhCCeEEEEeCC
Q 019910 136 LEDHIVTDLVTCGGCQSAHA-TAVAVSCAERGLKSHLLLRG 175 (334)
Q Consensus 136 a~~~g~~~VVt~Gg~qsNh~-~AvAaaaa~~Gl~~~ivv~~ 175 (334)
+++.|.++|+-+|- ..+.+ .++|..|..+|++++++...
T Consensus 107 L~~~gi~~vil~G~-~t~~CV~~Ta~~a~~~g~~v~v~~Da 146 (174)
T PF00857_consen 107 LRKRGIDTVILCGV-ATDVCVLATARDAFDRGYRVIVVEDA 146 (174)
T ss_dssp HHHTTESEEEEEEE-STTTHHHHHHHHHHHTT-EEEEEEEE
T ss_pred ccccccceEEEccc-ccCcEEehhHHHHHHCCCEEEEEChh
Confidence 35789999998875 45554 57888899999999988765
No 131
>cd06320 PBP1_allose_binding Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. The members of this group are belonging to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Like other periplasmic receptors of the ABC-type transport systems, the allose-binding protein consists of two alpha/beta domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding.
Probab=31.56 E-value=3.8e+02 Score=24.02 Aligned_cols=34 Identities=15% Similarity=-0.045 Sum_probs=25.2
Q ss_pred CCCEEEEcCCchhHHHHHHHHHHHcCC--CCeEEEEEe
Q 019910 293 RAIKFVVDAGTGTTAVGLGLGAICLGC--VPLFNTLLV 328 (334)
Q Consensus 293 ~~D~Vvvp~GtGgt~aGl~~g~k~lg~--~~~VigV~~ 328 (334)
.+|.|++. +...+.|+..++++.|. ++.|+|++-
T Consensus 182 ~~~ai~~~--~d~~a~~~~~al~~~g~~~di~vig~d~ 217 (275)
T cd06320 182 DLKAIYCN--NDTMALGVVEAVKNAGKQGKVLVVGTDG 217 (275)
T ss_pred CccEEEEC--CchhHHHHHHHHHhcCCCCCeEEEecCC
Confidence 46766543 56678899999999987 677777754
No 132
>cd06283 PBP1_RegR_EndR_KdgR_like Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR. Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR, all of which are members of the LacI-GalR family of bacterial transcription regulators. RegR regulates bacterial competence and the expression of virulence factors, including hyaluronidase. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=31.07 E-value=1.4e+02 Score=26.63 Aligned_cols=34 Identities=9% Similarity=-0.092 Sum_probs=26.1
Q ss_pred CCCEEEEcCCchhHHHHHHHHHHHcCC----CCeEEEEEe
Q 019910 293 RAIKFVVDAGTGTTAVGLGLGAICLGC----VPLFNTLLV 328 (334)
Q Consensus 293 ~~D~Vvvp~GtGgt~aGl~~g~k~lg~----~~~VigV~~ 328 (334)
.+|.||++ +..++.|+..+++..|. ++.|+|++-
T Consensus 178 ~~~ai~~~--~d~~a~g~~~~l~~~g~~vp~di~v~g~d~ 215 (267)
T cd06283 178 KKTAIFAA--NGLILLEVLKALKELGIRIPEDVGLIGFDD 215 (267)
T ss_pred CCCEEEEc--CcHHHHHHHHHHHHcCCCCccceEEEEeCC
Confidence 57888876 45667899999999885 567787764
No 133
>cd06308 PBP1_sensor_kinase_like Periplasmic binding domain of two-component sensor kinase signaling systems. Periplasmic binding domain of two-component sensor kinase signaling systems, some of which are fused with a C-terminal histidine kinase A domain (HisK) and/or a signal receiver domain (REC). Members of this group share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily and are predicted to be involved in sensing of environmental stimuli; their substrate specificities, however, are not known in detail.
Probab=31.04 E-value=3.9e+02 Score=23.95 Aligned_cols=35 Identities=17% Similarity=-0.055 Sum_probs=26.7
Q ss_pred CCCEEEEcCCchhHHHHHHHHHHHcCC--CCeEEEEEec
Q 019910 293 RAIKFVVDAGTGTTAVGLGLGAICLGC--VPLFNTLLVK 329 (334)
Q Consensus 293 ~~D~Vvvp~GtGgt~aGl~~g~k~lg~--~~~VigV~~~ 329 (334)
.+|.|++. +...+.|+..+++..|. ++.|+|++-.
T Consensus 182 ~~~aI~~~--~d~~a~g~~~al~~~g~~~dv~vvg~d~~ 218 (270)
T cd06308 182 DIDLVYAH--NDPMALGAYLAAKRAGREKEIKFIGIDGL 218 (270)
T ss_pred CCcEEEeC--CcHHHHHHHHHHHHcCCCCCcEEEEecCC
Confidence 57877664 55677899999999996 6788888654
No 134
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=30.99 E-value=1.6e+02 Score=29.91 Aligned_cols=34 Identities=26% Similarity=0.368 Sum_probs=28.3
Q ss_pred CEEEEeCCccchHHHHHHHHHHHhCCeEEEEeCCCC
Q 019910 142 TDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGEQ 177 (334)
Q Consensus 142 ~~VVt~Gg~qsNh~~AvAaaaa~~Gl~~~ivv~~~~ 177 (334)
+.||..|| ||.+.-+|..+.++|.+++++.+...
T Consensus 273 k~VvVIGg--G~~a~d~A~~l~~~G~~Vtlv~~~~~ 306 (449)
T TIGR01316 273 KSVVVIGG--GNTAVDSARTALRLGAEVHCLYRRTR 306 (449)
T ss_pred CeEEEECC--CHHHHHHHHHHHHcCCEEEEEeecCc
Confidence 45555887 89999999999999999999887643
No 135
>COG1609 PurR Transcriptional regulators [Transcription]
Probab=30.35 E-value=5.1e+02 Score=25.06 Aligned_cols=32 Identities=13% Similarity=-0.066 Sum_probs=25.6
Q ss_pred CCEEEEcCCchhHHHHHHHHHHHcCCC----CeEEEEE
Q 019910 294 AIKFVVDAGTGTTAVGLGLGAICLGCV----PLFNTLL 327 (334)
Q Consensus 294 ~D~Vvvp~GtGgt~aGl~~g~k~lg~~----~~VigV~ 327 (334)
||.||| ++--++.|+..+++.+|.. +.|+|.+
T Consensus 238 ptAif~--~nD~~Alg~l~~~~~~g~~vP~disviGfD 273 (333)
T COG1609 238 PTAIFC--ANDLMALGALRALRELGLRVPEDLSVIGFD 273 (333)
T ss_pred CcEEEE--cCcHHHHHHHHHHHHcCCCCCCeeEEEEec
Confidence 899997 4567899999999998854 6677765
No 136
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=30.06 E-value=74 Score=32.29 Aligned_cols=29 Identities=24% Similarity=0.412 Sum_probs=22.2
Q ss_pred EEEeCCccchHHHHHHHHHHHhCCeEEEEeC
Q 019910 144 LVTCGGCQSAHATAVAVSCAERGLKSHLLLR 174 (334)
Q Consensus 144 VVt~Gg~qsNh~~AvAaaaa~~Gl~~~ivv~ 174 (334)
||..|| |=+|...|++|++.|.++.++..
T Consensus 2 ViVVGg--G~AG~eAA~aaAr~G~~V~Lit~ 30 (392)
T PF01134_consen 2 VIVVGG--GHAGCEAALAAARMGAKVLLITH 30 (392)
T ss_dssp EEEESS--SHHHHHHHHHHHHTT--EEEEES
T ss_pred EEEECC--CHHHHHHHHHHHHCCCCEEEEee
Confidence 455777 66899999999999999999943
No 137
>PRK07121 hypothetical protein; Validated
Probab=30.03 E-value=65 Score=32.96 Aligned_cols=32 Identities=25% Similarity=0.333 Sum_probs=25.2
Q ss_pred CCEEEEeCCccchHHHHHHHHHHHhCCeEEEEeCC
Q 019910 141 VTDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRG 175 (334)
Q Consensus 141 ~~~VVt~Gg~qsNh~~AvAaaaa~~Gl~~~ivv~~ 175 (334)
++ ||.+|+ |..+.+.|..|++.|.+++++-..
T Consensus 21 ~D-VvVVGa--G~AGl~AA~~aae~G~~VillEK~ 52 (492)
T PRK07121 21 AD-VVVVGF--GAAGACAAIEAAAAGARVLVLERA 52 (492)
T ss_pred cC-EEEECc--CHHHHHHHHHHHHCCCeEEEEeCC
Confidence 44 444786 889999999999999988877543
No 138
>PRK11440 putative hydrolase; Provisional
Probab=29.97 E-value=1.2e+02 Score=26.71 Aligned_cols=46 Identities=15% Similarity=0.189 Sum_probs=33.3
Q ss_pred HHHhhhHHHHhcCCCEEEEeCCccchHHHHHHHHHHHhCCeEEEEeCCC
Q 019910 128 KMDALLPLLEDHIVTDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGE 176 (334)
Q Consensus 128 kL~~lL~~a~~~g~~~VVt~Gg~qsNh~~AvAaaaa~~Gl~~~ivv~~~ 176 (334)
.|+.+| ++.|+++||-||-.+..--.++|.-|..+|++++++....
T Consensus 111 ~L~~~L---~~~gi~~lii~Gv~T~~CV~~Ta~~A~~~gy~v~vv~Da~ 156 (188)
T PRK11440 111 DLELQL---RRRGIDTIVLCGISTNIGVESTARNAWELGFNLVIAEDAC 156 (188)
T ss_pred CHHHHH---HHCCCCEEEEeeechhHHHHHHHHHHHHCCCEEEEechhh
Confidence 354444 4789999998876443345678888999999988887653
No 139
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=29.71 E-value=65 Score=32.49 Aligned_cols=32 Identities=34% Similarity=0.386 Sum_probs=24.7
Q ss_pred CCEEEEeCCccchHHHHHHHHHHHhCCeEEEEeCC
Q 019910 141 VTDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRG 175 (334)
Q Consensus 141 ~~~VVt~Gg~qsNh~~AvAaaaa~~Gl~~~ivv~~ 175 (334)
++.|| +|+ |-.+.+.|+.|++.|.+++++=..
T Consensus 5 ~DVvV-VG~--G~aGl~AA~~aa~~G~~V~vlEk~ 36 (466)
T PRK08274 5 VDVLV-IGG--GNAALCAALAAREAGASVLLLEAA 36 (466)
T ss_pred CCEEE-ECC--CHHHHHHHHHHHHCCCeEEEEeCC
Confidence 34444 776 789999999999999987776543
No 140
>cd06294 PBP1_ycjW_transcription_regulator_like Ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors. This group includes the ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=29.56 E-value=1.5e+02 Score=26.50 Aligned_cols=35 Identities=17% Similarity=-0.037 Sum_probs=27.4
Q ss_pred CCCCEEEEcCCchhHHHHHHHHHHHcCC----CCeEEEEEe
Q 019910 292 KRAIKFVVDAGTGTTAVGLGLGAICLGC----VPLFNTLLV 328 (334)
Q Consensus 292 ~~~D~Vvvp~GtGgt~aGl~~g~k~lg~----~~~VigV~~ 328 (334)
+.+|.||+ .++..+.|+..++++.|. ++.|+|++-
T Consensus 182 ~~~~ai~~--~~d~~a~g~~~al~~~g~~iP~dv~vig~d~ 220 (270)
T cd06294 182 PRPTAIVA--TDDLLALGVLKVLNELGLKVPEDLSIIGFNN 220 (270)
T ss_pred CCCCEEEE--CChHHHHHHHHHHHHcCCCCCcceEEEeeCC
Confidence 35888887 467788999999999996 567888764
No 141
>COG1597 LCB5 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]
Probab=29.41 E-value=1.1e+02 Score=29.71 Aligned_cols=36 Identities=17% Similarity=0.035 Sum_probs=26.0
Q ss_pred CCEEEEcCCchhHHHHHHHHHHHcCCCCeEEEEEeccCC
Q 019910 294 AIKFVVDAGTGTTAVGLGLGAICLGCVPLFNTLLVKLSR 332 (334)
Q Consensus 294 ~D~Vvvp~GtGgt~aGl~~g~k~lg~~~~VigV~~~gs~ 332 (334)
+|.||+ +|+=||+.-++.|+...+.+. +|+-|.||.
T Consensus 59 ~D~via-~GGDGTv~evingl~~~~~~~--LgilP~GT~ 94 (301)
T COG1597 59 YDTVIA-AGGDGTVNEVANGLAGTDDPP--LGILPGGTA 94 (301)
T ss_pred CCEEEE-ecCcchHHHHHHHHhcCCCCc--eEEecCCch
Confidence 566555 455566888888888777665 899998874
No 142
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=29.24 E-value=65 Score=29.43 Aligned_cols=35 Identities=17% Similarity=0.119 Sum_probs=29.3
Q ss_pred CCCCEEEEcCCchhHHHHHHHHHHHcCCCCeEEEEEe
Q 019910 292 KRAIKFVVDAGTGTTAVGLGLGAICLGCVPLFNTLLV 328 (334)
Q Consensus 292 ~~~D~Vvvp~GtGgt~aGl~~g~k~lg~~~~VigV~~ 328 (334)
..++.+++++|.||-..++-.+ ..+|.-+|++++-
T Consensus 32 ~~~g~~l~DIGaGtGsi~iE~a--~~~p~~~v~AIe~ 66 (187)
T COG2242 32 PRPGDRLWDIGAGTGSITIEWA--LAGPSGRVIAIER 66 (187)
T ss_pred CCCCCEEEEeCCCccHHHHHHH--HhCCCceEEEEec
Confidence 3578899999998888887766 7899999999984
No 143
>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]
Probab=29.02 E-value=92 Score=31.48 Aligned_cols=33 Identities=24% Similarity=0.277 Sum_probs=27.1
Q ss_pred EEEEeCCccchHHHHHHHHHHHhCCeEEEEeCCCC
Q 019910 143 DLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGEQ 177 (334)
Q Consensus 143 ~VVt~Gg~qsNh~~AvAaaaa~~Gl~~~ivv~~~~ 177 (334)
+|-..||.| .|+-+|.+|+++|++++++-|...
T Consensus 3 tvgIlGGGQ--LgrMm~~aa~~lG~~v~vLdp~~~ 35 (375)
T COG0026 3 TVGILGGGQ--LGRMMALAAARLGIKVIVLDPDAD 35 (375)
T ss_pred eEEEEcCcH--HHHHHHHHHHhcCCEEEEecCCCC
Confidence 344468766 999999999999999999987643
No 144
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=29.02 E-value=69 Score=27.40 Aligned_cols=31 Identities=23% Similarity=0.198 Sum_probs=24.8
Q ss_pred EEeCCccchHHHHHHHHHHHhCCeEEEEeCCCC
Q 019910 145 VTCGGCQSAHATAVAVSCAERGLKSHLLLRGEQ 177 (334)
Q Consensus 145 Vt~Gg~qsNh~~AvAaaaa~~Gl~~~ivv~~~~ 177 (334)
+-+|+ |.-+.+++..|+.+|++++++=+...
T Consensus 2 ~I~Ga--G~va~al~~la~~lg~~v~v~d~r~e 32 (136)
T PF13478_consen 2 VIFGA--GHVARALARLAALLGFRVTVVDPRPE 32 (136)
T ss_dssp EEES---STCHHHHHHHHHHCTEEEEEEES-CC
T ss_pred EEEeC--cHHHHHHHHHHHhCCCEEEEEcCCcc
Confidence 44776 77899999999999999999987743
No 145
>cd06326 PBP1_STKc_like Type I periplasmic binding domain of uncharacterized extracellular ligand-binding proteins. The type I periplasmic binding domain of uncharacterized extracellular ligand-binding proteins, some of which contain a conserved catalytic serine/threonine protein kinase (STKc) domain in the N-terminal region. Members of this group are sequence-similar to the branched-chain amino acid ABC transporter leucine-isoleucine-valine-binding protein (LIVBP); their ligand specificity has not been determined experimentally, however.
Probab=28.97 E-value=4.8e+02 Score=24.28 Aligned_cols=37 Identities=11% Similarity=-0.069 Sum_probs=29.3
Q ss_pred CCEEEEcCCchhHHHHHHHHHHHcCCCCeEEEEEeccC
Q 019910 294 AIKFVVDAGTGTTAVGLGLGAICLGCVPLFNTLLVKLS 331 (334)
Q Consensus 294 ~D~Vvvp~GtGgt~aGl~~g~k~lg~~~~VigV~~~gs 331 (334)
+|.||+.. .+..+.++.+.++..|...+++++...++
T Consensus 192 ~dav~~~~-~~~~a~~~i~~~~~~G~~~~~~~~~~~~~ 228 (336)
T cd06326 192 PQAVIMVG-AYKAAAAFIRALRKAGGGAQFYNLSFVGA 228 (336)
T ss_pred CCEEEEEc-CcHHHHHHHHHHHhcCCCCcEEEEeccCH
Confidence 78777654 44568899999999999999998876654
No 146
>PRK09126 hypothetical protein; Provisional
Probab=28.92 E-value=69 Score=31.14 Aligned_cols=32 Identities=31% Similarity=0.358 Sum_probs=25.1
Q ss_pred EEEeCCccchHHHHHHHHHHHhCCeEEEEeCCCC
Q 019910 144 LVTCGGCQSAHATAVAVSCAERGLKSHLLLRGEQ 177 (334)
Q Consensus 144 VVt~Gg~qsNh~~AvAaaaa~~Gl~~~ivv~~~~ 177 (334)
|+..|| |=.|.++|.+.++.|++++++=+...
T Consensus 6 viIvGg--G~aGl~~A~~L~~~G~~v~v~E~~~~ 37 (392)
T PRK09126 6 IVVVGA--GPAGLSFARSLAGSGLKVTLIERQPL 37 (392)
T ss_pred EEEECc--CHHHHHHHHHHHhCCCcEEEEeCCCc
Confidence 444676 67999999999999999988865543
No 147
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=28.72 E-value=2.3e+02 Score=23.73 Aligned_cols=37 Identities=16% Similarity=-0.012 Sum_probs=27.5
Q ss_pred CCEEEEcCCchhHHHHHHHHH--HHcCCCCeEEEEEecc
Q 019910 294 AIKFVVDAGTGTTAVGLGLGA--ICLGCVPLFNTLLVKL 330 (334)
Q Consensus 294 ~D~Vvvp~GtGgt~aGl~~g~--k~lg~~~~VigV~~~g 330 (334)
....||+.|+|--..+..++. ....+..+|+|||...
T Consensus 25 ~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~ 63 (141)
T PF13679_consen 25 RCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNE 63 (141)
T ss_pred CCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCc
Confidence 456788888888777777765 3336899999999753
No 148
>cd06293 PBP1_LacI_like_11 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=28.45 E-value=1.6e+02 Score=26.47 Aligned_cols=35 Identities=11% Similarity=-0.102 Sum_probs=27.3
Q ss_pred CCCCEEEEcCCchhHHHHHHHHHHHcCC----CCeEEEEEe
Q 019910 292 KRAIKFVVDAGTGTTAVGLGLGAICLGC----VPLFNTLLV 328 (334)
Q Consensus 292 ~~~D~Vvvp~GtGgt~aGl~~g~k~lg~----~~~VigV~~ 328 (334)
..||.||++ +-.++.|+..+++..|. ++.|+|++-
T Consensus 176 ~~~~ai~~~--~d~~a~g~~~al~~~g~~vp~di~i~g~d~ 214 (269)
T cd06293 176 DPPTAIFAA--SDEIAIGLLEVLRERGLSIPGDMSLVGFDD 214 (269)
T ss_pred CCCCEEEEc--CcHHHHHHHHHHHHcCCCCccceEEEeecC
Confidence 358888875 56778899999999884 477888864
No 149
>KOG1529 consensus Mercaptopyruvate sulfurtransferase/thiosulfate sulfurtransferase [Defense mechanisms]
Probab=28.44 E-value=1e+02 Score=30.07 Aligned_cols=45 Identities=22% Similarity=0.146 Sum_probs=34.7
Q ss_pred HHHHHHhhh-cCCCCCCEEEEcCCchhHHHHHHHHHHHcCCCCeEE
Q 019910 280 LQYLSQDHL-LGRKRAIKFVVDAGTGTTAVGLGLGAICLGCVPLFN 324 (334)
Q Consensus 280 a~EI~eq~~-~g~~~~D~Vvvp~GtGgt~aGl~~g~k~lg~~~~Vi 324 (334)
++||..+.. ++-..-.-|++.||+|=+++=++.++...|+++++.
T Consensus 221 ~edl~~~f~~~~l~~~~p~~~sC~~Gisa~~i~~al~r~g~~~~lY 266 (286)
T KOG1529|consen 221 AEDLKHLFAQKGLKLSKPVIVSCGTGISASIIALALERSGPDAKLY 266 (286)
T ss_pred HHHHHHHHHhcCcccCCCEEEeeccchhHHHHHHHHHhcCCCccee
Confidence 678865543 232333559999999999999999999999888875
No 150
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=28.25 E-value=97 Score=28.27 Aligned_cols=31 Identities=3% Similarity=-0.095 Sum_probs=18.3
Q ss_pred EEEcCCchhHHHHHHHHHHHcCCCCeEEEEEec
Q 019910 297 FVVDAGTGTTAVGLGLGAICLGCVPLFNTLLVK 329 (334)
Q Consensus 297 Vvvp~GtGgt~aGl~~g~k~lg~~~~VigV~~~ 329 (334)
+=+.+|+|..+..++.- ...+.++|+||+++
T Consensus 58 LDlGcG~G~~~~~l~~~--~~~p~~~v~gvD~s 88 (239)
T TIGR00740 58 YDLGCSRGAATLSARRN--INQPNVKIIGIDNS 88 (239)
T ss_pred EEecCCCCHHHHHHHHh--cCCCCCeEEEEeCC
Confidence 44455555544333322 12478999999985
No 151
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=28.18 E-value=1e+02 Score=27.37 Aligned_cols=27 Identities=22% Similarity=0.286 Sum_probs=22.5
Q ss_pred eCCccchHHHHHHHHHHHhCCeEEEEeCC
Q 019910 147 CGGCQSAHATAVAVSCAERGLKSHLLLRG 175 (334)
Q Consensus 147 ~Gg~qsNh~~AvAaaaa~~Gl~~~ivv~~ 175 (334)
.|+ |..|.++|+.++..|++++++-+.
T Consensus 5 iGa--G~mG~~iA~~~a~~G~~V~l~d~~ 31 (180)
T PF02737_consen 5 IGA--GTMGRGIAALFARAGYEVTLYDRS 31 (180)
T ss_dssp ES---SHHHHHHHHHHHHTTSEEEEE-SS
T ss_pred EcC--CHHHHHHHHHHHhCCCcEEEEECC
Confidence 565 789999999999999999999664
No 152
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=27.86 E-value=69 Score=33.08 Aligned_cols=31 Identities=13% Similarity=0.340 Sum_probs=24.4
Q ss_pred CCEEEEeCCccchHHHHHHHHHHHhCCeEEEEeC
Q 019910 141 VTDLVTCGGCQSAHATAVAVSCAERGLKSHLLLR 174 (334)
Q Consensus 141 ~~~VVt~Gg~qsNh~~AvAaaaa~~Gl~~~ivv~ 174 (334)
++.|| +|+ |..|.+.|+.|++.|.+++++=.
T Consensus 62 ~DVvV-VG~--G~AGl~AAi~Aa~~Ga~VivlEK 92 (506)
T PRK06481 62 YDIVI-VGA--GGAGMSAAIEAKDAGMNPVILEK 92 (506)
T ss_pred CCEEE-ECc--CHHHHHHHHHHHHCCCCEEEEEC
Confidence 34444 786 78999999999999998777644
No 153
>COG1879 RbsB ABC-type sugar transport system, periplasmic component [Carbohydrate transport and metabolism]
Probab=27.75 E-value=5.2e+02 Score=24.28 Aligned_cols=43 Identities=9% Similarity=0.014 Sum_probs=33.1
Q ss_pred hhHHHHhcCCCEEEEeCCccchHHHHHHHHHHHhCCeEEEEeCC
Q 019910 132 LLPLLEDHIVTDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRG 175 (334)
Q Consensus 132 lL~~a~~~g~~~VVt~Gg~qsNh~~AvAaaaa~~Gl~~~ivv~~ 175 (334)
.+..+..++.+.|+.. ...........-.|...|++.+.+-..
T Consensus 83 ~i~~~ia~~~daIiv~-~~d~~~~~~~v~~a~~aGIpVv~~d~~ 125 (322)
T COG1879 83 QIEDLIAQGVDAIIIN-PVDPDALTPAVKKAKAAGIPVVTVDSD 125 (322)
T ss_pred HHHHHHHcCCCEEEEc-CCChhhhHHHHHHHHHCCCcEEEEecC
Confidence 4555678899998854 345677788888899999999888765
No 154
>cd06316 PBP1_ABC_sugar_binding_like_7 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=27.57 E-value=1.2e+02 Score=27.86 Aligned_cols=44 Identities=9% Similarity=-0.071 Sum_probs=31.3
Q ss_pred HHHHHHHhhhcCCCCCCEEEEcCCchhHHHHHHHHHHHcCC-CCeEEEEEe
Q 019910 279 LLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGLGAICLGC-VPLFNTLLV 328 (334)
Q Consensus 279 la~EI~eq~~~g~~~~D~Vvvp~GtGgt~aGl~~g~k~lg~-~~~VigV~~ 328 (334)
.+.++.++. +++|.||++ +...+.|+..+++.+|. ++.|+|++-
T Consensus 176 ~~~~~l~~~----~~~~ai~~~--~d~~a~g~~~~l~~~g~~di~vvg~d~ 220 (294)
T cd06316 176 IANAMLTQN----PDLKGIYAV--WDVPAEGVIAALRAAGRDDIKVTTVDL 220 (294)
T ss_pred HHHHHHHhC----CCeeEEEeC--CCchhHHHHHHHHHcCCCCceEEEeCC
Confidence 345555432 357787765 34458899999999997 888998874
No 155
>cd06274 PBP1_FruR Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs. Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs, all of which are a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to members of the type I periplasmic binding protein superfamily. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor
Probab=27.56 E-value=1.8e+02 Score=26.10 Aligned_cols=35 Identities=9% Similarity=-0.295 Sum_probs=27.4
Q ss_pred CCCEEEEcCCchhHHHHHHHHHHHcCC----CCeEEEEEec
Q 019910 293 RAIKFVVDAGTGTTAVGLGLGAICLGC----VPLFNTLLVK 329 (334)
Q Consensus 293 ~~D~Vvvp~GtGgt~aGl~~g~k~lg~----~~~VigV~~~ 329 (334)
.+|.|++. +..++.|+..++++.|. ++.|+|++-.
T Consensus 178 ~~~ai~~~--~d~~A~g~~~al~~~g~~ip~dv~v~g~d~~ 216 (264)
T cd06274 178 LPRALFTT--SYTLLEGVLRFLRERPGLAPSDLRIATFDDH 216 (264)
T ss_pred CCcEEEEc--ChHHHHHHHHHHHHcCCCCCcceEEEEeCCH
Confidence 57888754 67788999999999985 4788887753
No 156
>PRK14804 ornithine carbamoyltransferase; Provisional
Probab=27.56 E-value=2.2e+02 Score=27.74 Aligned_cols=36 Identities=14% Similarity=0.079 Sum_probs=30.0
Q ss_pred CEEEEeCCccchHHHHHHHHHHHhCCeEEEEeCCCCC
Q 019910 142 TDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGEQP 178 (334)
Q Consensus 142 ~~VVt~Gg~qsNh~~AvAaaaa~~Gl~~~ivv~~~~p 178 (334)
.+|..+|- .+|-+++++.+++++|+..+++.|...+
T Consensus 154 ~~va~vGd-~~rv~~Sl~~~~~~~G~~v~~~~P~~~~ 189 (311)
T PRK14804 154 KQLTYIGV-HNNVVNSLIGITAALGIHLTLVTPIAAK 189 (311)
T ss_pred CEEEEECC-CCcHHHHHHHHHHHcCCEEEEECCCCcc
Confidence 35666775 6899999999999999999999998743
No 157
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=27.47 E-value=93 Score=28.97 Aligned_cols=34 Identities=24% Similarity=0.431 Sum_probs=25.4
Q ss_pred EEEEeCCccchHHHHHHHHHHHhCCeEEEEeCCCCC
Q 019910 143 DLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGEQP 178 (334)
Q Consensus 143 ~VVt~Gg~qsNh~~AvAaaaa~~Gl~~~ivv~~~~p 178 (334)
.|+..|| |=.|.++|.+.++.|++++||=+...+
T Consensus 3 dV~IvGa--G~aGl~~A~~L~~~G~~v~i~E~~~~~ 36 (356)
T PF01494_consen 3 DVAIVGA--GPAGLAAALALARAGIDVTIIERRPDP 36 (356)
T ss_dssp EEEEE----SHHHHHHHHHHHHTTCEEEEEESSSSC
T ss_pred eEEEECC--CHHHHHHHHHHHhcccccccchhcccc
Confidence 3454666 558999999999999999988776444
No 158
>PRK10401 DNA-binding transcriptional regulator GalS; Provisional
Probab=27.31 E-value=1.6e+02 Score=27.90 Aligned_cols=35 Identities=9% Similarity=-0.190 Sum_probs=27.6
Q ss_pred CCCCEEEEcCCchhHHHHHHHHHHHcCC----CCeEEEEEe
Q 019910 292 KRAIKFVVDAGTGTTAVGLGLGAICLGC----VPLFNTLLV 328 (334)
Q Consensus 292 ~~~D~Vvvp~GtGgt~aGl~~g~k~lg~----~~~VigV~~ 328 (334)
..||.||+. +...+.|+..+++.+|. ++.|+|.+-
T Consensus 236 ~~~~ai~~~--nd~~A~g~~~al~~~G~~vP~disvigfD~ 274 (346)
T PRK10401 236 LQLTAVFAY--NDNMAAGALTALKDNGIAIPLHLSIIGFDD 274 (346)
T ss_pred CCCcEEEEC--CcHHHHHHHHHHHHcCCCCCCceEEEEeCC
Confidence 358888864 67788899999999985 567888763
No 159
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=27.30 E-value=72 Score=32.85 Aligned_cols=33 Identities=30% Similarity=0.422 Sum_probs=26.0
Q ss_pred CCEEEEeCCccchHHHHHHHHHHHhCCeEEEEeCCC
Q 019910 141 VTDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGE 176 (334)
Q Consensus 141 ~~~VVt~Gg~qsNh~~AvAaaaa~~Gl~~~ivv~~~ 176 (334)
.+.|| .|| |-.|.++|+.+++.|+++.++=..+
T Consensus 7 ~DVvI-IGG--Gi~G~~~A~~la~rG~~V~LlEk~d 39 (502)
T PRK13369 7 YDLFV-IGG--GINGAGIARDAAGRGLKVLLCEKDD 39 (502)
T ss_pred cCEEE-ECC--CHHHHHHHHHHHhCCCcEEEEECCC
Confidence 34455 777 7799999999999999987776553
No 160
>PRK00779 ornithine carbamoyltransferase; Provisional
Probab=27.15 E-value=4.1e+02 Score=25.82 Aligned_cols=34 Identities=12% Similarity=0.110 Sum_probs=28.5
Q ss_pred EEEEeCCccchHHHHHHHHHHHhCCeEEEEeCCCC
Q 019910 143 DLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGEQ 177 (334)
Q Consensus 143 ~VVt~Gg~qsNh~~AvAaaaa~~Gl~~~ivv~~~~ 177 (334)
+|.-+|- .+|.+++++.+++++|++++++.|+..
T Consensus 154 ~i~~vGd-~~~v~~Sl~~~l~~~g~~v~~~~P~~~ 187 (304)
T PRK00779 154 KVAWVGD-GNNVANSLLLAAALLGFDLRVATPKGY 187 (304)
T ss_pred EEEEEeC-CCccHHHHHHHHHHcCCEEEEECCccc
Confidence 4555776 689999999999999999999998753
No 161
>PRK10727 DNA-binding transcriptional regulator GalR; Provisional
Probab=27.10 E-value=1.6e+02 Score=27.91 Aligned_cols=34 Identities=9% Similarity=-0.204 Sum_probs=26.8
Q ss_pred CCCCEEEEcCCchhHHHHHHHHHHHcCC----CCeEEEEE
Q 019910 292 KRAIKFVVDAGTGTTAVGLGLGAICLGC----VPLFNTLL 327 (334)
Q Consensus 292 ~~~D~Vvvp~GtGgt~aGl~~g~k~lg~----~~~VigV~ 327 (334)
..||.||+ .+-.++.|+..+++.+|. ++.|+|++
T Consensus 236 ~~~~ai~~--~nD~~A~g~~~al~~~G~~vP~disVigfD 273 (343)
T PRK10727 236 RNFTAVAC--YNDSMAAGAMGVLNDNGIDVPGEISLIGFD 273 (343)
T ss_pred CCCCEEEE--cCcHHHHHHHHHHHHcCCCCCcceeEEeec
Confidence 35788876 466788899999999995 56788876
No 162
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=27.02 E-value=3.2e+02 Score=21.69 Aligned_cols=18 Identities=11% Similarity=-0.080 Sum_probs=9.3
Q ss_pred HHHHHHHHHHhCCeEEEE
Q 019910 155 ATAVAVSCAERGLKSHLL 172 (334)
Q Consensus 155 ~~AvAaaaa~~Gl~~~iv 172 (334)
|..++..|+..|.+.+++
T Consensus 3 G~~a~q~ak~~G~~vi~~ 20 (130)
T PF00107_consen 3 GLMAIQLAKAMGAKVIAT 20 (130)
T ss_dssp HHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHcCCEEEEE
Confidence 345556666666333333
No 163
>cd06349 PBP1_ABC_ligand_binding_like_14 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=27.02 E-value=5.3e+02 Score=24.20 Aligned_cols=35 Identities=6% Similarity=-0.135 Sum_probs=26.9
Q ss_pred CCCEEEEcCCchhHHHHHHHHHHHcCCCCeEEEEEe
Q 019910 293 RAIKFVVDAGTGTTAVGLGLGAICLGCVPLFNTLLV 328 (334)
Q Consensus 293 ~~D~Vvvp~GtGgt~aGl~~g~k~lg~~~~VigV~~ 328 (334)
.+|.|++. +.|..+.-+.+.++..|.+.++++...
T Consensus 190 ~~d~v~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~ 224 (340)
T cd06349 190 NPDAIILI-SYYNDGAPIARQARAVGLDIPVVASSS 224 (340)
T ss_pred CCCEEEEc-cccchHHHHHHHHHHcCCCCcEEccCC
Confidence 47887774 466777789999999999888887543
No 164
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=26.97 E-value=74 Score=31.79 Aligned_cols=29 Identities=24% Similarity=0.324 Sum_probs=22.5
Q ss_pred EEEeCCccchHHHHHHHHHHHhC-CeEEEEeC
Q 019910 144 LVTCGGCQSAHATAVAVSCAERG-LKSHLLLR 174 (334)
Q Consensus 144 VVt~Gg~qsNh~~AvAaaaa~~G-l~~~ivv~ 174 (334)
||..|+ |..|.+.|+.|++.| .+++++=.
T Consensus 2 VvVVG~--G~AGl~AA~~aa~~G~~~V~vlEk 31 (439)
T TIGR01813 2 VVVVGS--GFAGLSAALSAKKAGAANVVLLEK 31 (439)
T ss_pred EEEECC--CHHHHHHHHHHHHcCCccEEEEec
Confidence 444776 789999999999999 87666543
No 165
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=26.60 E-value=3.2e+02 Score=26.39 Aligned_cols=53 Identities=11% Similarity=0.193 Sum_probs=38.7
Q ss_pred HHHHhhhHHHHhcCCCEEEEeCCccchHHHHHHHHHHHhCCeEEEEeCCCCCcc
Q 019910 127 RKMDALLPLLEDHIVTDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGEQPQI 180 (334)
Q Consensus 127 RkL~~lL~~a~~~g~~~VVt~Gg~qsNh~~AvAaaaa~~Gl~~~ivv~~~~p~~ 180 (334)
++++..+..+.+.|+++|+..= .---+..-+-.+|.++|+..+.+++++.++.
T Consensus 109 ~Gie~F~~~~~~~GvdGlivpD-LP~ee~~~~~~~~~~~gi~~I~lvaPtt~~~ 161 (265)
T COG0159 109 YGIEKFLRRAKEAGVDGLLVPD-LPPEESDELLKAAEKHGIDPIFLVAPTTPDE 161 (265)
T ss_pred hhHHHHHHHHHHcCCCEEEeCC-CChHHHHHHHHHHHHcCCcEEEEeCCCCCHH
Confidence 5577778888888888887521 1234667788888888888888888877653
No 166
>cd01543 PBP1_XylR Ligand-binding domain of DNA transcription repressor specific for xylose (XylR). Ligand-binding domain of DNA transcription repressor specific for xylose (XylR), a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of XylR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=26.58 E-value=1.7e+02 Score=26.34 Aligned_cols=35 Identities=11% Similarity=-0.091 Sum_probs=26.8
Q ss_pred CCCEEEEcCCchhHHHHHHHHHHHcCC----CCeEEEEEec
Q 019910 293 RAIKFVVDAGTGTTAVGLGLGAICLGC----VPLFNTLLVK 329 (334)
Q Consensus 293 ~~D~Vvvp~GtGgt~aGl~~g~k~lg~----~~~VigV~~~ 329 (334)
.+|.||+. +...+.|+..+++..|. ++.|+|++-.
T Consensus 171 ~~~ai~~~--~d~~a~g~~~~l~~~g~~vp~di~vigfd~~ 209 (265)
T cd01543 171 KPVGIFAC--TDARARQLLEACRRAGIAVPEEVAVLGVDND 209 (265)
T ss_pred CCcEEEec--ChHHHHHHHHHHHHhCCCCCCceEEEeeCCc
Confidence 57877765 55778899999998885 6788888743
No 167
>TIGR01307 pgm_bpd_ind 2,3-bisphosphoglycerate-independent phosphoglycerate mutase. This protein is about double in length of, and devoid of homology to the form of phosphoglycerate mutase that uses 2,3-bisphosphoglycerate as a cofactor.
Probab=26.50 E-value=1.8e+02 Score=30.50 Aligned_cols=48 Identities=29% Similarity=0.382 Sum_probs=36.4
Q ss_pred HHhhhHHHHhcCC----CEEEEeCCccc--hHHHHHHHHHHHhCCe---EEEEeCCC
Q 019910 129 MDALLPLLEDHIV----TDLVTCGGCQS--AHATAVAVSCAERGLK---SHLLLRGE 176 (334)
Q Consensus 129 L~~lL~~a~~~g~----~~VVt~Gg~qs--Nh~~AvAaaaa~~Gl~---~~ivv~~~ 176 (334)
+..++..+++.+. -++++-||..| +|..++.-.|++.|++ .|+|+.+.
T Consensus 94 l~~~~~~~~~~~~~lHl~GL~SdGgVHsh~~hl~~l~~~a~~~g~~~v~vH~~~DGR 150 (501)
T TIGR01307 94 LLGAIDRAKDNNGKLHLMGLVSDGGVHSHIDHLIALIELAAERGIEKVVLHAFTDGR 150 (501)
T ss_pred HHHHHHHHHhcCCceEEEEeccCCCCcchHHHHHHHHHHHHHcCCCeEEEEEecCCC
Confidence 4455666665544 35668888888 7899999999999996 78899883
No 168
>cd06280 PBP1_LacI_like_4 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=26.49 E-value=1.8e+02 Score=26.08 Aligned_cols=35 Identities=14% Similarity=0.055 Sum_probs=26.4
Q ss_pred CCCCEEEEcCCchhHHHHHHHHHHHcCC----CCeEEEEEe
Q 019910 292 KRAIKFVVDAGTGTTAVGLGLGAICLGC----VPLFNTLLV 328 (334)
Q Consensus 292 ~~~D~Vvvp~GtGgt~aGl~~g~k~lg~----~~~VigV~~ 328 (334)
..|+.||+ .+..++.|+..+++..|. ++.|+|++-
T Consensus 171 ~~~~ai~~--~~d~~a~g~~~~l~~~g~~~p~di~iig~d~ 209 (263)
T cd06280 171 ERPEALVA--SNGLLLLGALRAVRAAGLRIPQDLALAGFDN 209 (263)
T ss_pred CCCcEEEE--CCcHHHHHHHHHHHHcCCCCCCcEEEEEeCC
Confidence 35788776 566778899999999884 567887664
No 169
>COG2216 KdpB High-affinity K+ transport system, ATPase chain B [Inorganic ion transport and metabolism]
Probab=26.44 E-value=1.2e+02 Score=32.36 Aligned_cols=77 Identities=22% Similarity=0.282 Sum_probs=48.4
Q ss_pred EEEEeCCCCCCCChhHHHHHHHhhhHHHHhcCCCEEEEeCCccchHHHHHHHHHHHhCCeEEEEeCCCCCccccchhHHH
Q 019910 109 FYVVRDDLLHPLVNGNKARKMDALLPLLEDHIVTDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGEQPQILTGYNLIS 188 (334)
Q Consensus 109 lyvKrDDl~~p~~gGnK~RkL~~lL~~a~~~g~~~VVt~Gg~qsNh~~AvAaaaa~~Gl~~~ivv~~~~p~~~~gn~~~~ 188 (334)
+|+| |.-.| |-|-|-. +.++.|.++|..+| -|+..| |+.|++.|++-.+ -+..|+.+..-+..-
T Consensus 442 I~Lk--DivK~---Gi~ERf~-----elR~MgIkTvM~TG---DN~~TA-a~IA~EAGVDdfi--AeatPEdK~~~I~~e 505 (681)
T COG2216 442 IYLK--DIVKP---GIKERFA-----ELRKMGIKTVMITG---DNPLTA-AAIAAEAGVDDFI--AEATPEDKLALIRQE 505 (681)
T ss_pred EEeh--hhcch---hHHHHHH-----HHHhcCCeEEEEeC---CCHHHH-HHHHHHhCchhhh--hcCChHHHHHHHHHH
Confidence 6777 34344 5777764 56899999999665 577665 7778999987643 344565443222333
Q ss_pred HHCCe-EEEECCCC
Q 019910 189 TIYGK-VTYVPRTH 201 (334)
Q Consensus 189 ~~~G~-V~~v~~~~ 201 (334)
+.-|+ |-.++++.
T Consensus 506 Q~~grlVAMtGDGT 519 (681)
T COG2216 506 QAEGRLVAMTGDGT 519 (681)
T ss_pred HhcCcEEEEcCCCC
Confidence 44564 55566554
No 170
>PLN02743 nicotinamidase
Probab=26.37 E-value=1.1e+02 Score=28.74 Aligned_cols=39 Identities=18% Similarity=0.331 Sum_probs=31.7
Q ss_pred HHhcCCCEEEEeCCccchHHH----HHHHHHHHhCC-----eEEEEeCC
Q 019910 136 LEDHIVTDLVTCGGCQSAHAT----AVAVSCAERGL-----KSHLLLRG 175 (334)
Q Consensus 136 a~~~g~~~VVt~Gg~qsNh~~----AvAaaaa~~Gl-----~~~ivv~~ 175 (334)
.++.|+++||-+| ...|.|+ ++|..|..+|+ +++++-..
T Consensus 146 Lr~~gI~~liv~G-v~T~~CV~~~~sTardA~~~Gy~~~~~~V~Vv~DA 193 (239)
T PLN02743 146 VNNNKIKVILVVG-ICTDICVLDFVASALSARNHGILPPLEDVVVYSRG 193 (239)
T ss_pred HHHCCCCEEEEEE-eCcchhccChHHHHHHHHHcCCCCCCceEEEeCCc
Confidence 3578999999776 5789999 89999999999 66666554
No 171
>cd06290 PBP1_LacI_like_9 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=26.36 E-value=1.7e+02 Score=26.08 Aligned_cols=35 Identities=14% Similarity=-0.043 Sum_probs=27.0
Q ss_pred CCCCEEEEcCCchhHHHHHHHHHHHcCC----CCeEEEEEe
Q 019910 292 KRAIKFVVDAGTGTTAVGLGLGAICLGC----VPLFNTLLV 328 (334)
Q Consensus 292 ~~~D~Vvvp~GtGgt~aGl~~g~k~lg~----~~~VigV~~ 328 (334)
..+|.||++ +..++.|+..+++..|. ++.|+|++-
T Consensus 175 ~~~~aii~~--~~~~a~~~~~~l~~~g~~ip~di~vi~~d~ 213 (265)
T cd06290 175 PDFTAIFAA--NDQTAYGARLALYRRGLRVPEDVSLIGFDD 213 (265)
T ss_pred CCCCEEEEc--CcHHHHHHHHHHHHcCCCCCcceEEeeecC
Confidence 357888864 77788999999999884 467787764
No 172
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=26.21 E-value=3.7e+02 Score=22.11 Aligned_cols=33 Identities=24% Similarity=0.324 Sum_probs=24.3
Q ss_pred EEEEeCCccchHHHHHHHHHHHhCCeEEEEeCCC
Q 019910 143 DLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGE 176 (334)
Q Consensus 143 ~VVt~Gg~qsNh~~AvAaaaa~~Gl~~~ivv~~~ 176 (334)
+++-+|+ .+.-|.++|..-.+.|-..++++...
T Consensus 2 ~~lItGa-~~giG~~~a~~l~~~g~~~v~~~~r~ 34 (167)
T PF00106_consen 2 TVLITGA-SSGIGRALARALARRGARVVILTSRS 34 (167)
T ss_dssp EEEEETT-TSHHHHHHHHHHHHTTTEEEEEEESS
T ss_pred EEEEECC-CCHHHHHHHHHHHhcCceEEEEeeec
Confidence 3444565 58999999999999977666666554
No 173
>COG0683 LivK ABC-type branched-chain amino acid transport systems, periplasmic component [Amino acid transport and metabolism]
Probab=26.20 E-value=6.1e+02 Score=24.63 Aligned_cols=49 Identities=14% Similarity=-0.115 Sum_probs=37.7
Q ss_pred HHHHHHHHHHhhhcCCCCCCEEEEcCCchhHHHHHHHHHHHcCCCCeEEEEEeccC
Q 019910 276 VFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGLGAICLGCVPLFNTLLVKLS 331 (334)
Q Consensus 276 ~~~la~EI~eq~~~g~~~~D~Vvvp~GtGgt~aGl~~g~k~lg~~~~VigV~~~gs 331 (334)
+.++..+|.+. .+| +|+-.|.|...+-+++.++..|...++++.+-.++
T Consensus 192 ~~~~v~~i~~~------~~d-~v~~~~~~~~~~~~~r~~~~~G~~~~~~~~~~~~~ 240 (366)
T COG0683 192 FSALVAKIKAA------GPD-AVLVGGYGPDAALFLRQAREQGLKAKLIGGDGAGT 240 (366)
T ss_pred hHHHHHHHHhc------CCC-EEEECCCCccchHHHHHHHHcCCCCccccccccCc
Confidence 44566666554 367 66667888889999999999999999888776655
No 174
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=26.06 E-value=61 Score=31.92 Aligned_cols=33 Identities=18% Similarity=0.034 Sum_probs=25.1
Q ss_pred CEEEEcCCchhHHHHHHHHHHHcCCCCeEEEEEec
Q 019910 295 IKFVVDAGTGTTAVGLGLGAICLGCVPLFNTLLVK 329 (334)
Q Consensus 295 D~Vvvp~GtGgt~aGl~~g~k~lg~~~~VigV~~~ 329 (334)
..-++++|||+......++.+. +.|+|+|+|+.
T Consensus 115 ~~~vLDIGtGag~I~~lLa~~~--~~~~~~atDId 147 (321)
T PRK11727 115 NVRVLDIGVGANCIYPLIGVHE--YGWRFVGSDID 147 (321)
T ss_pred CceEEEecCCccHHHHHHHhhC--CCCEEEEEeCC
Confidence 3568999999876666666654 46899999974
No 175
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=26.06 E-value=88 Score=30.15 Aligned_cols=30 Identities=23% Similarity=0.232 Sum_probs=23.4
Q ss_pred EEEeCCccchHHHHHHHHHHHhCCeEEEEeCC
Q 019910 144 LVTCGGCQSAHATAVAVSCAERGLKSHLLLRG 175 (334)
Q Consensus 144 VVt~Gg~qsNh~~AvAaaaa~~Gl~~~ivv~~ 175 (334)
||-.|| |-.|.++|+..++.|++++++=+.
T Consensus 3 vvIIGa--Gi~G~s~A~~La~~g~~V~l~e~~ 32 (380)
T TIGR01377 3 VIVVGA--GIMGCFAAYHLAKHGKKTLLLEQF 32 (380)
T ss_pred EEEECC--CHHHHHHHHHHHHCCCeEEEEecc
Confidence 344776 789999999999999987776443
No 176
>cd00431 cysteine_hydrolases Cysteine hydrolases; This family contains amidohydrolases, like CSHase (N-carbamoylsarcosine amidohydrolase), involved in creatine metabolism and nicotinamidase, converting nicotinamide to nicotinic acid and ammonia in the pyridine nucleotide cycle. It also contains isochorismatase, an enzyme that catalyzes the conversion of isochorismate to 2,3-dihydroxybenzoate and pyruvate, via the hydrolysis of the vinyl ether bond, and other related enzymes with unknown function.
Probab=26.00 E-value=1.7e+02 Score=24.63 Aligned_cols=38 Identities=18% Similarity=0.278 Sum_probs=28.9
Q ss_pred HhcCCCEEEEeCCccchHH-HHHHHHHHHhCCeEEEEeCC
Q 019910 137 EDHIVTDLVTCGGCQSAHA-TAVAVSCAERGLKSHLLLRG 175 (334)
Q Consensus 137 ~~~g~~~VVt~Gg~qsNh~-~AvAaaaa~~Gl~~~ivv~~ 175 (334)
++.|.++|+-+|- .+|.+ .++|..+..+|++.+++...
T Consensus 106 ~~~~i~~vil~G~-~t~~CV~~T~~~a~~~G~~v~vi~Da 144 (161)
T cd00431 106 RERGIDTLVVCGI-ATDICVLATARDALDLGYRVIVVEDA 144 (161)
T ss_pred HHCCCCEEEEEec-CcChhHHHHHHHHHHCCCEEEEehhh
Confidence 4679999997875 55665 56677788899998888665
No 177
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=25.81 E-value=2.4e+02 Score=23.93 Aligned_cols=30 Identities=23% Similarity=0.270 Sum_probs=26.7
Q ss_pred eCCccchHHHHHHHHHHHhCCeEEEEeCCCC
Q 019910 147 CGGCQSAHATAVAVSCAERGLKSHLLLRGEQ 177 (334)
Q Consensus 147 ~Gg~qsNh~~AvAaaaa~~Gl~~~ivv~~~~ 177 (334)
+|+ +|+-|..++....+.|.+.++++|...
T Consensus 4 ~Ga-tG~vG~~l~~~L~~~~~~V~~~~R~~~ 33 (183)
T PF13460_consen 4 FGA-TGFVGRALAKQLLRRGHEVTALVRSPS 33 (183)
T ss_dssp ETT-TSHHHHHHHHHHHHTTSEEEEEESSGG
T ss_pred ECC-CChHHHHHHHHHHHCCCEEEEEecCch
Confidence 565 799999999999999999999999844
No 178
>PTZ00287 6-phosphofructokinase; Provisional
Probab=25.70 E-value=6.9e+02 Score=29.84 Aligned_cols=48 Identities=13% Similarity=0.070 Sum_probs=34.1
Q ss_pred HhhhHHHHhcCCCEEEEeCCccchHH-HHHHHHHHHhCCe-EEEEeCCCC
Q 019910 130 DALLPLLEDHIVTDLVTCGGCQSAHA-TAVAVSCAERGLK-SHLLLRGEQ 177 (334)
Q Consensus 130 ~~lL~~a~~~g~~~VVt~Gg~qsNh~-~AvAaaaa~~Gl~-~~ivv~~~~ 177 (334)
..++...++.+.+.+|..||--|+.+ ..+|-.+.+.|++ ++|-+|.+.
T Consensus 918 ~ka~~~lk~l~ID~LVvIGGDgS~t~A~~LaE~f~~~gi~i~VIGVPkTI 967 (1419)
T PTZ00287 918 NKVCETVTNLQLNGLVMPGSNVTITEAALLAEYFLEKKIPTSVVGIPLTG 967 (1419)
T ss_pred HHHHHHHHHhCCCEEEEECCchHHHHHHHHHHHHHhcCCCccEEEeCcee
Confidence 33445567899999999998777754 4556667778998 455567654
No 179
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=25.65 E-value=84 Score=32.88 Aligned_cols=33 Identities=33% Similarity=0.599 Sum_probs=26.0
Q ss_pred CCEEEEeCCccchHHHHHHHHHHHhCCeEEEEeCCC
Q 019910 141 VTDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGE 176 (334)
Q Consensus 141 ~~~VVt~Gg~qsNh~~AvAaaaa~~Gl~~~ivv~~~ 176 (334)
.+.|| .|| |-.|.++|+.+++.|++++++=..+
T Consensus 7 ~DVvI-IGG--Gi~G~~iA~~La~rG~~V~LlEk~d 39 (546)
T PRK11101 7 TDVII-IGG--GATGAGIARDCALRGLRCILVERHD 39 (546)
T ss_pred ccEEE-ECc--CHHHHHHHHHHHHcCCeEEEEECCC
Confidence 34455 777 7799999999999999988776543
No 180
>cd06281 PBP1_LacI_like_5 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=25.63 E-value=2e+02 Score=25.95 Aligned_cols=34 Identities=15% Similarity=0.049 Sum_probs=26.0
Q ss_pred CCCCEEEEcCCchhHHHHHHHHHHHcCC----CCeEEEEE
Q 019910 292 KRAIKFVVDAGTGTTAVGLGLGAICLGC----VPLFNTLL 327 (334)
Q Consensus 292 ~~~D~Vvvp~GtGgt~aGl~~g~k~lg~----~~~VigV~ 327 (334)
..||.||+ .+..++.|+..+++..|. ++.|+|.+
T Consensus 175 ~~~~ai~~--~~d~~a~g~~~~l~~~g~~ip~dv~iig~d 212 (269)
T cd06281 175 DRPTAIIA--GGTQVLVGVLRALREAGLRIPRDLSVISIG 212 (269)
T ss_pred CCCcEEEE--cCcHHHHHHHHHHHHcCCCCCcceeEEEec
Confidence 45888875 355677899999999885 56788876
No 181
>KOG0025 consensus Zn2+-binding dehydrogenase (nuclear receptor binding factor-1) [Transcription; Energy production and conversion]
Probab=25.60 E-value=2.3e+02 Score=28.13 Aligned_cols=67 Identities=15% Similarity=0.119 Sum_probs=42.6
Q ss_pred HHHHHhhhHHHHhcCCCEEEEeCCccchHHHHHHHHHHHhCCeEEEEeCCCCCccccchhHHHHHCC-eEEEEC
Q 019910 126 ARKMDALLPLLEDHIVTDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGEQPQILTGYNLISTIYG-KVTYVP 198 (334)
Q Consensus 126 ~RkL~~lL~~a~~~g~~~VVt~Gg~qsNh~~AvAaaaa~~Gl~~~ivv~~~~p~~~~gn~~~~~~~G-~V~~v~ 198 (334)
.|-|.-.+.. ..| +.||--|+ .|--++++-..|+.+|++.+=++|....-.+. + .....+| +-++.+
T Consensus 149 yrmL~dfv~L--~~G-D~vIQNga-nS~VG~~ViQlaka~GiktinvVRdR~~ieel-~-~~Lk~lGA~~ViTe 216 (354)
T KOG0025|consen 149 YRMLKDFVQL--NKG-DSVIQNGA-NSGVGQAVIQLAKALGIKTINVVRDRPNIEEL-K-KQLKSLGATEVITE 216 (354)
T ss_pred HHHHHHHHhc--CCC-CeeeecCc-ccHHHHHHHHHHHHhCcceEEEeecCccHHHH-H-HHHHHcCCceEecH
Confidence 5555544442 223 57775543 56778899999999999999999984432221 1 2345589 655544
No 182
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=25.57 E-value=85 Score=32.75 Aligned_cols=30 Identities=20% Similarity=0.274 Sum_probs=24.0
Q ss_pred EEEeCCccchHHHHHHHHHHHhCCeEEEEeCC
Q 019910 144 LVTCGGCQSAHATAVAVSCAERGLKSHLLLRG 175 (334)
Q Consensus 144 VVt~Gg~qsNh~~AvAaaaa~~Gl~~~ivv~~ 175 (334)
||.+|+ |..+.+.|+.|++.|.+++++-..
T Consensus 7 VvVVG~--G~AGl~AAl~Aa~~G~~VivlEK~ 36 (549)
T PRK12834 7 VIVVGA--GLAGLVAAAELADAGKRVLLLDQE 36 (549)
T ss_pred EEEECc--CHHHHHHHHHHHHCCCeEEEEeCC
Confidence 444776 889999999999999998776433
No 183
>cd06297 PBP1_LacI_like_12 Ligand-binding domain of uncharacterized transcription regulators from Thermus thermophilus and close homologs. Ligand-binding domain of uncharacterized transcription regulators from Thermus thermophilus and close homologs from other bacteria. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.
Probab=25.32 E-value=1.9e+02 Score=26.14 Aligned_cols=35 Identities=14% Similarity=0.034 Sum_probs=27.2
Q ss_pred CCCEEEEcCCchhHHHHHHHHHHHcCC----CCeEEEEEec
Q 019910 293 RAIKFVVDAGTGTTAVGLGLGAICLGC----VPLFNTLLVK 329 (334)
Q Consensus 293 ~~D~Vvvp~GtGgt~aGl~~g~k~lg~----~~~VigV~~~ 329 (334)
.+|.||+. +...+.|+..+++..|. ++.|+|++-.
T Consensus 180 ~~~ai~~~--~d~~a~g~~~~l~~~g~~vP~di~vvg~d~~ 218 (269)
T cd06297 180 PPLAVFAS--ADQQALGALQEAVELGLTVGEDVRVVGFDDH 218 (269)
T ss_pred CCcEEEEc--CcHHHHHHHHHHHHcCCCCCCceEEEEECCc
Confidence 57888765 55678899999999985 6788888653
No 184
>PRK06753 hypothetical protein; Provisional
Probab=25.17 E-value=1e+02 Score=29.78 Aligned_cols=30 Identities=13% Similarity=0.222 Sum_probs=24.2
Q ss_pred EEEeCCccchHHHHHHHHHHHhCCeEEEEeCC
Q 019910 144 LVTCGGCQSAHATAVAVSCAERGLKSHLLLRG 175 (334)
Q Consensus 144 VVt~Gg~qsNh~~AvAaaaa~~Gl~~~ivv~~ 175 (334)
|+-.|| |=.|.++|.+.++.|++++|+=+.
T Consensus 3 V~IvGg--G~aGl~~A~~L~~~g~~v~v~E~~ 32 (373)
T PRK06753 3 IAIIGA--GIGGLTAAALLQEQGHEVKVFEKN 32 (373)
T ss_pred EEEECC--CHHHHHHHHHHHhCCCcEEEEecC
Confidence 444676 679999999999999998887544
No 185
>PF00391 PEP-utilizers: PEP-utilising enzyme, mobile domain; InterPro: IPR008279 A number of enzymes that catalyze the transfer of a phosphoryl group from phosphoenolpyruvate (PEP) via a phospho-histidine intermediate have been shown to be structurally related [, , , ]. All these enzymes share the same catalytic mechanism: they bind PEP and transfer the phosphoryl group from it to a histidine residue. This domain is a "swivelling" beta/beta/alpha domain which is thought to be mobile in all proteins known to contain it []. It is often found associated with the pyruvate phosphate dikinase, PEP/pyruvate-binding domain (IPR002192 from INTERPRO) at its N terminus.; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0016310 phosphorylation; PDB: 2X0S_A 2OLS_A 2HRO_A 2E28_A 2WQD_A 3T05_D 3T0T_D 3T07_B 2DIK_A 2FM4_A ....
Probab=25.16 E-value=1.2e+02 Score=23.22 Aligned_cols=35 Identities=26% Similarity=0.286 Sum_probs=24.5
Q ss_pred hcCCCEEEEeCCccchHHHHHHHHHHHhCCeEEEEeCC
Q 019910 138 DHIVTDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRG 175 (334)
Q Consensus 138 ~~g~~~VVt~Gg~qsNh~~AvAaaaa~~Gl~~~ivv~~ 175 (334)
..++.+||+..|..-.|+ |..|+.+|+++++=++.
T Consensus 28 ~~~~~Giv~~~Gg~~SH~---aIlAr~~giP~ivg~~~ 62 (80)
T PF00391_consen 28 LQRVAGIVTEEGGPTSHA---AILARELGIPAIVGVGD 62 (80)
T ss_dssp HTTSSEEEESSSSTTSHH---HHHHHHTT-EEEESTTT
T ss_pred hhheEEEEEEcCCccchH---HHHHHHcCCCEEEeecc
Confidence 567889998544333443 78899999999887753
No 186
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=25.02 E-value=8.7e+02 Score=25.97 Aligned_cols=51 Identities=18% Similarity=0.165 Sum_probs=34.5
Q ss_pred CCEEEEeCCccchHHHHHHHHHHHhCCeEEEEeCCCCCccccchhHHHHHCC-eEEEECC
Q 019910 141 VTDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGEQPQILTGYNLISTIYG-KVTYVPR 199 (334)
Q Consensus 141 ~~~VVt~Gg~qsNh~~AvAaaaa~~Gl~~~ivv~~~~p~~~~gn~~~~~~~G-~V~~v~~ 199 (334)
.++|+-||. |..|+.+|-.-.+.|++.+++ +.+. + .....+.+| +|++=+.
T Consensus 400 ~~~vII~G~--Gr~G~~va~~L~~~g~~vvvI-D~d~-~----~v~~~~~~g~~v~~GDa 451 (621)
T PRK03562 400 QPRVIIAGF--GRFGQIVGRLLLSSGVKMTVL-DHDP-D----HIETLRKFGMKVFYGDA 451 (621)
T ss_pred cCcEEEEec--ChHHHHHHHHHHhCCCCEEEE-ECCH-H----HHHHHHhcCCeEEEEeC
Confidence 356777885 889999999999999987766 3322 1 233445678 7666543
No 187
>KOG2387 consensus CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]
Probab=24.94 E-value=49 Score=34.33 Aligned_cols=74 Identities=18% Similarity=0.275 Sum_probs=44.8
Q ss_pred hhHHHHHHHhhhHHH---HhcCCCEEEEeCCccchHHHHHHHHHHHhCCe--------------EEEEeCCCCCcc----
Q 019910 122 NGNKARKMDALLPLL---EDHIVTDLVTCGGCQSAHATAVAVSCAERGLK--------------SHLLLRGEQPQI---- 180 (334)
Q Consensus 122 gGnK~RkL~~lL~~a---~~~g~~~VVt~Gg~qsNh~~AvAaaaa~~Gl~--------------~~ivv~~~~p~~---- 180 (334)
|||-+|+.+..+.+| ++.+..-+-.|=|.| .+.+-.+=..+|++ |+|+||+.....
T Consensus 371 GGFG~RGveG~i~Aak~ARen~iP~LGiCLGmQ---~AvIEfaRnvLg~~dAnStEF~p~~~~~vVi~MPE~~~~~mGgt 447 (585)
T KOG2387|consen 371 GGFGDRGVEGKILAAKWARENKIPFLGICLGMQ---LAVIEFARNVLGLKDANSTEFDPETKNPVVIFMPEHNKTHMGGT 447 (585)
T ss_pred CcccccchhHHHHHHHHHHhcCCCeEeeehhhh---HHHHHHHHHhhCCCCCCccccCCCCCCcEEEECcCCCcccccce
Confidence 678889888877664 445544444453333 22233344456664 999999865432
Q ss_pred ----------ccchhHHHHHCCeEEEEC
Q 019910 181 ----------LTGYNLISTIYGKVTYVP 198 (334)
Q Consensus 181 ----------~~gn~~~~~~~G~V~~v~ 198 (334)
..+...+.++||++.+|+
T Consensus 448 MRLG~R~t~f~~~~s~~~kLYG~~~~V~ 475 (585)
T KOG2387|consen 448 MRLGSRRTVFQDKDSKLRKLYGNVEFVD 475 (585)
T ss_pred eeecccceeeecCchHHHHHhCCchhhh
Confidence 123345778899777775
No 188
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=24.71 E-value=1.6e+02 Score=27.58 Aligned_cols=32 Identities=25% Similarity=0.295 Sum_probs=24.6
Q ss_pred EEEEeCCccchHHHHHHHHHHHhCCeEEEEeCCC
Q 019910 143 DLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGE 176 (334)
Q Consensus 143 ~VVt~Gg~qsNh~~AvAaaaa~~Gl~~~ivv~~~ 176 (334)
+|+.+|+ |=.+.+.|..+++.|+++.++=...
T Consensus 27 DVvIVGg--GpAGl~AA~~la~~G~~V~liEk~~ 58 (257)
T PRK04176 27 DVAIVGA--GPSGLTAAYYLAKAGLKVAVFERKL 58 (257)
T ss_pred CEEEECc--cHHHHHHHHHHHhCCCeEEEEecCC
Confidence 4444776 5688888999999999988886543
No 189
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=24.66 E-value=28 Score=26.93 Aligned_cols=30 Identities=17% Similarity=0.067 Sum_probs=21.2
Q ss_pred EcCCchhHHHHHHHHHHHcCCCCeEEEEEeccCC
Q 019910 299 VDAGTGTTAVGLGLGAICLGCVPLFNTLLVKLSR 332 (334)
Q Consensus 299 vp~GtGgt~aGl~~g~k~lg~~~~VigV~~~gs~ 332 (334)
+.+|+|....-+...+ +..+++||+++.++
T Consensus 3 iGcG~G~~~~~l~~~~----~~~~~~~~D~s~~~ 32 (99)
T PF08242_consen 3 IGCGTGRLLRALLEEL----PDARYTGVDISPSM 32 (99)
T ss_dssp ESTTTS-TTTTHHHHC-----EEEEEEEESSSST
T ss_pred eCccChHHHHHHHHhC----CCCEEEEEECCHHH
Confidence 5678888776666544 89999999998764
No 190
>TIGR03702 lip_kinase_YegS lipid kinase YegS. Members of this protein family are designated YegS, an apparent lipid kinase family in the Proteobacteria. Bakali, et al. report phosphatidylglycerol kinase activity for the member from Escherichia coli, but refrain from calling that activity synonymous with its biological role. Note that a broader, subfamily-type model (TIGR00147), includes this family but also multiple paralogs in some species and varied functions.
Probab=24.56 E-value=1.3e+02 Score=28.53 Aligned_cols=37 Identities=14% Similarity=-0.044 Sum_probs=20.9
Q ss_pred CCEEEEcCCchhHHHHHHHHHHHcCCCCe-EEEEEeccC
Q 019910 294 AIKFVVDAGTGTTAVGLGLGAICLGCVPL-FNTLLVKLS 331 (334)
Q Consensus 294 ~D~Vvvp~GtGgt~aGl~~g~k~lg~~~~-VigV~~~gs 331 (334)
+|. |+.+|+=||+.-++.|+...+...+ -+||-|.||
T Consensus 53 ~d~-vv~~GGDGTi~ev~ngl~~~~~~~~~~lgiiP~GT 90 (293)
T TIGR03702 53 VST-VIAGGGDGTLREVATALAQIRDDAAPALGLLPLGT 90 (293)
T ss_pred CCE-EEEEcCChHHHHHHHHHHhhCCCCCCcEEEEcCCc
Confidence 343 4455555666777777654432222 367777776
No 191
>PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 This entry represents a family that are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions. The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS []. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [].; PDB: 2FNI_A 2FNU_A 2FN6_A 2PO3_A 3UWC_A 1O61_B 1O62_B 1O69_B 1B9I_A 1B9H_A ....
Probab=24.53 E-value=3e+02 Score=26.75 Aligned_cols=67 Identities=15% Similarity=0.126 Sum_probs=44.1
Q ss_pred hHHHHHHHhhhHHHHhcCCCEEEEeCCccchHHHHHHHHHHHhCCe--EEEEeCCCCCccccchhHHHHHCC-eEEEEC
Q 019910 123 GNKARKMDALLPLLEDHIVTDLVTCGGCQSAHATAVAVSCAERGLK--SHLLLRGEQPQILTGYNLISTIYG-KVTYVP 198 (334)
Q Consensus 123 GnK~RkL~~lL~~a~~~g~~~VVt~Gg~qsNh~~AvAaaaa~~Gl~--~~ivv~~~~p~~~~gn~~~~~~~G-~V~~v~ 198 (334)
|-..+.++.-+. ...|.+.++.+++ |..|.-+|..+ +|++ -.|++|.-.... ........| ++++|+
T Consensus 24 g~~~~~fE~~~a--~~~g~~~~~~~~s--gt~Al~~al~~--l~~~~gdeVi~p~~t~~~---~~~ai~~~G~~pv~~D 93 (363)
T PF01041_consen 24 GPYVEEFEKEFA--EYFGVKYAVAVSS--GTSALHLALRA--LGLGPGDEVIVPAYTFPA---TASAILWAGAEPVFVD 93 (363)
T ss_dssp SHHHHHHHHHHH--HHHTSSEEEEESS--HHHHHHHHHHH--TTGGTTSEEEEESSS-TH---HHHHHHHTT-EEEEE-
T ss_pred CHHHHHHHHHHH--HHhCCCeEEEeCC--hhHHHHHHHHh--cCCCcCceEecCCCcchH---HHHHHHHhccEEEEEe
Confidence 567788877665 4678899998875 44555555555 6665 677777644332 234567789 999986
No 192
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=24.53 E-value=60 Score=28.84 Aligned_cols=34 Identities=24% Similarity=0.157 Sum_probs=24.1
Q ss_pred CEEEEcCCchhHHHHHHHHHHHcCCCCeEEEEEecc
Q 019910 295 IKFVVDAGTGTTAVGLGLGAICLGCVPLFNTLLVKL 330 (334)
Q Consensus 295 D~Vvvp~GtGgt~aGl~~g~k~lg~~~~VigV~~~g 330 (334)
+..|+.+|+|+-..++..+ ...+..+|+||+.+-
T Consensus 43 ~~~vLDiGcGtG~~s~~la--~~~~~~~V~~iD~s~ 76 (181)
T TIGR00138 43 GKKVIDIGSGAGFPGIPLA--IARPELKLTLLESNH 76 (181)
T ss_pred CCeEEEecCCCCccHHHHH--HHCCCCeEEEEeCcH
Confidence 3457777777777776664 356778899999863
No 193
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=24.47 E-value=85 Score=32.78 Aligned_cols=30 Identities=23% Similarity=0.360 Sum_probs=24.2
Q ss_pred EEEeCCccchHHHHHHHHHHHhCCeEEEEeCC
Q 019910 144 LVTCGGCQSAHATAVAVSCAERGLKSHLLLRG 175 (334)
Q Consensus 144 VVt~Gg~qsNh~~AvAaaaa~~Gl~~~ivv~~ 175 (334)
||.+|+ |..|.+.|..|++.|.+++++-..
T Consensus 2 VlVVG~--G~AGl~AA~~aae~G~~V~lleK~ 31 (566)
T TIGR01812 2 VVIVGA--GLAGLRAAVEAAKAGLNTAVISKV 31 (566)
T ss_pred EEEECc--cHHHHHHHHHHHHCCCcEEEEecc
Confidence 444776 789999999999999998887554
No 194
>cd06275 PBP1_PurR Ligand-binding domain of purine repressor, PurR, which functions as the master regulatory protein of de novo purine nucleotide biosynthesis in Escherichia coli. Ligand-binding domain of purine repressor, PurR, which functions as the master regulatory protein of de novo purine nucleotide biosynthesis in Escherichia coli. This dimeric PurR belongs to the LacI-GalR family of transcription regulators and is activated to bind to DNA operator sites by initially binding either of high affinity corepressors, hypoxanthine or guanine. PurR is composed of two functional domains: aan N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the purine transcription repressor undergoes a
Probab=24.39 E-value=2.2e+02 Score=25.42 Aligned_cols=35 Identities=17% Similarity=-0.050 Sum_probs=26.2
Q ss_pred CCCCEEEEcCCchhHHHHHHHHHHHcCC----CCeEEEEEe
Q 019910 292 KRAIKFVVDAGTGTTAVGLGLGAICLGC----VPLFNTLLV 328 (334)
Q Consensus 292 ~~~D~Vvvp~GtGgt~aGl~~g~k~lg~----~~~VigV~~ 328 (334)
+.+|.||++ +..++.|+..+++.+|. ++.|+|++-
T Consensus 177 ~~~~ai~~~--~d~~a~g~~~~l~~~g~~vp~di~vvg~d~ 215 (269)
T cd06275 177 KRPTAVFCG--NDLMAMGALCAAQEAGLRVPQDLSIIGYDD 215 (269)
T ss_pred CCCcEEEEC--ChHHHHHHHHHHHHcCCCCCcceEEEEeCC
Confidence 357888774 46778899999999885 567888764
No 195
>cd06284 PBP1_LacI_like_6 Ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group includes the ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group belongs to the the LacI-GalR family repressors and are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.
Probab=24.30 E-value=2e+02 Score=25.50 Aligned_cols=33 Identities=15% Similarity=-0.035 Sum_probs=24.9
Q ss_pred CCCEEEEcCCchhHHHHHHHHHHHcCC----CCeEEEEE
Q 019910 293 RAIKFVVDAGTGTTAVGLGLGAICLGC----VPLFNTLL 327 (334)
Q Consensus 293 ~~D~Vvvp~GtGgt~aGl~~g~k~lg~----~~~VigV~ 327 (334)
.+|.||++ +..++.|+..+++..|. ++.|+|++
T Consensus 176 ~~~ai~~~--~~~~a~g~~~al~~~g~~~p~~v~v~g~d 212 (267)
T cd06284 176 RPTAIFCF--SDEMAIGAISALKELGLRVPEDISVVGFD 212 (267)
T ss_pred CCcEEEEc--CcHHHHHHHHHHHHcCCCCccceeEEEeC
Confidence 57888886 55567899999999885 45677765
No 196
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=24.19 E-value=1e+02 Score=28.23 Aligned_cols=30 Identities=17% Similarity=0.245 Sum_probs=23.8
Q ss_pred EEEeCCccchHHHHHHHHHHHhCCeEEEEeCC
Q 019910 144 LVTCGGCQSAHATAVAVSCAERGLKSHLLLRG 175 (334)
Q Consensus 144 VVt~Gg~qsNh~~AvAaaaa~~Gl~~~ivv~~ 175 (334)
|+-.|| |-.|.+.|..+++.|++++++=+.
T Consensus 3 vvIIG~--G~aGl~aA~~l~~~g~~v~lie~~ 32 (300)
T TIGR01292 3 VIIIGA--GPAGLTAAIYAARANLKTLIIEGM 32 (300)
T ss_pred EEEECC--CHHHHHHHHHHHHCCCCEEEEecc
Confidence 444776 678999999999999998877544
No 197
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=24.06 E-value=51 Score=31.14 Aligned_cols=50 Identities=22% Similarity=0.042 Sum_probs=29.8
Q ss_pred HHHHHHHHHhhhcCCCCCCE-EEEcCCchhHHHHHHHHHHHcCCCCeEEEEEeccCC
Q 019910 277 FRLLQYLSQDHLLGRKRAIK-FVVDAGTGTTAVGLGLGAICLGCVPLFNTLLVKLSR 332 (334)
Q Consensus 277 ~~la~EI~eq~~~g~~~~D~-Vvvp~GtGgt~aGl~~g~k~lg~~~~VigV~~~gs~ 332 (334)
..+=.++.+....+ ..+. +=|++|||-.+.-++.. .+ .-+|+|++.+.++
T Consensus 37 ~~Wr~~~i~~~~~~--~g~~vLDva~GTGd~a~~~~k~---~g-~g~v~~~D~s~~M 87 (238)
T COG2226 37 RLWRRALISLLGIK--PGDKVLDVACGTGDMALLLAKS---VG-TGEVVGLDISESM 87 (238)
T ss_pred HHHHHHHHHhhCCC--CCCEEEEecCCccHHHHHHHHh---cC-CceEEEEECCHHH
Confidence 34556666655222 2233 44677777766555543 33 8999999997653
No 198
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=24.00 E-value=1.1e+02 Score=33.02 Aligned_cols=31 Identities=29% Similarity=0.479 Sum_probs=25.1
Q ss_pred EEEEeCCccchHHHHHHHHHHHhCCeEEEEeCC
Q 019910 143 DLVTCGGCQSAHATAVAVSCAERGLKSHLLLRG 175 (334)
Q Consensus 143 ~VVt~Gg~qsNh~~AvAaaaa~~Gl~~~ivv~~ 175 (334)
+||..|| |=.|.+.|+++++.|+++.++-+.
T Consensus 6 DVIVVGG--GpAG~eAA~~aAR~G~kV~LiE~~ 36 (618)
T PRK05192 6 DVIVVGG--GHAGCEAALAAARMGAKTLLLTHN 36 (618)
T ss_pred eEEEECc--hHHHHHHHHHHHHcCCcEEEEecc
Confidence 3444776 668999999999999999999765
No 199
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=24.00 E-value=8.4e+02 Score=25.43 Aligned_cols=30 Identities=7% Similarity=0.059 Sum_probs=24.3
Q ss_pred CEEEEeCCccchHHHHHHHHHHHhCCeEEEEe
Q 019910 142 TDLVTCGGCQSAHATAVAVSCAERGLKSHLLL 173 (334)
Q Consensus 142 ~~VVt~Gg~qsNh~~AvAaaaa~~Gl~~~ivv 173 (334)
++++-||. |+-|+.+|-.-++.|.+++++=
T Consensus 418 ~hiiI~G~--G~~G~~la~~L~~~g~~vvvId 447 (558)
T PRK10669 418 NHALLVGY--GRVGSLLGEKLLAAGIPLVVIE 447 (558)
T ss_pred CCEEEECC--ChHHHHHHHHHHHCCCCEEEEE
Confidence 56777885 8899999999999998876653
No 200
>PTZ00317 NADP-dependent malic enzyme; Provisional
Probab=24.00 E-value=2.8e+02 Score=29.62 Aligned_cols=110 Identities=22% Similarity=0.284 Sum_probs=61.3
Q ss_pred CCceeeeccChH---HHHHHHhhh-hhhccCCCCceeecccccccccCCCCCCCcccccCCCCcCCCCCccccCCCCeEE
Q 019910 35 PQGICNVRMSGE---ELLSRLLDR-KWALTSPDSKIHQIKLFTTTEKHGGGPLGGISFLNNTCPFLGDDMIMRDEDRCFY 110 (334)
Q Consensus 35 ~~~~~~~~~~~~---~~~~~~~~~-~~~~~~p~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~Tp~l~~~~l~~~~g~~ly 110 (334)
+=|+..++...+ +++++.... +... |...|+..+|-.. ..+.+++.. ..++-
T Consensus 212 YlG~r~~R~~g~eY~~f~defv~av~~~~--P~~~Iq~EDf~~~---------naf~iL~ky-------------r~~i~ 267 (559)
T PTZ00317 212 YLGLREKRLDDDEYYELLDEFMEAVSSRW--PNAVVQFEDFSNN---------HCFDLLERY-------------QNKYR 267 (559)
T ss_pred cccccCCCCChhhHHHHHHHHHHHHHHhC--CCeEEehhhcCCc---------cHHHHHHHh-------------ccCCC
Confidence 457777777763 233333332 2222 4467776655442 123333332 23466
Q ss_pred EEeCCCCCCCChhHHHHHHHhhhHHHHhcCC----CEEEEeCCccchHHHHHHHHHH----HhCC------eEEEEeCC
Q 019910 111 VVRDDLLHPLVNGNKARKMDALLPLLEDHIV----TDLVTCGGCQSAHATAVAVSCA----ERGL------KSHLLLRG 175 (334)
Q Consensus 111 vKrDDl~~p~~gGnK~RkL~~lL~~a~~~g~----~~VVt~Gg~qsNh~~AvAaaaa----~~Gl------~~~ivv~~ 175 (334)
+=.||.+. ++ +=.|..++...+-.|. .+||.+|+ |-.+.++|-.+. +.|+ +.+.+++.
T Consensus 268 ~FnDDiQG--Ta---aV~lAgll~Alr~~g~~l~d~riv~~GA--GsAgiGia~ll~~~m~~~Gls~eeA~~~i~~vD~ 339 (559)
T PTZ00317 268 CFNDDIQG--TG---AVIAAGFLNALKLSGVPPEEQRIVFFGA--GSAAIGVANNIADLAAEYGVTREEALKSFYLVDS 339 (559)
T ss_pred Eecccchh--HH---HHHHHHHHHHHHHhCCChhhcEEEEECC--CHHHHHHHHHHHHHHHHcCCChhHhcCeEEEEcC
Confidence 67899965 34 2345555655544443 57787887 557777777665 4799 66666654
No 201
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=23.99 E-value=87 Score=30.44 Aligned_cols=31 Identities=26% Similarity=0.380 Sum_probs=24.8
Q ss_pred EEEEeCCccchHHHHHHHHHHHhCCeEEEEeCC
Q 019910 143 DLVTCGGCQSAHATAVAVSCAERGLKSHLLLRG 175 (334)
Q Consensus 143 ~VVt~Gg~qsNh~~AvAaaaa~~Gl~~~ivv~~ 175 (334)
+|+..|+ |-.|.++|.+.++.|++++++=+.
T Consensus 9 dViIVGa--G~~Gl~~A~~L~~~G~~v~liE~~ 39 (388)
T PRK07494 9 DIAVIGG--GPAGLAAAIALARAGASVALVAPE 39 (388)
T ss_pred CEEEECc--CHHHHHHHHHHhcCCCeEEEEeCC
Confidence 3554776 779999999999999998887554
No 202
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=23.92 E-value=1e+02 Score=30.21 Aligned_cols=31 Identities=26% Similarity=0.442 Sum_probs=24.8
Q ss_pred EEEEeCCccchHHHHHHHHHHHhCCeEEEEeCC
Q 019910 143 DLVTCGGCQSAHATAVAVSCAERGLKSHLLLRG 175 (334)
Q Consensus 143 ~VVt~Gg~qsNh~~AvAaaaa~~Gl~~~ivv~~ 175 (334)
+|+-.|| |-.|.++|.+.++.|+++++|=..
T Consensus 5 dv~IvGg--G~aGl~~A~~L~~~G~~v~l~E~~ 35 (384)
T PRK08849 5 DIAVVGG--GMVGAATALGFAKQGRSVAVIEGG 35 (384)
T ss_pred cEEEECc--CHHHHHHHHHHHhCCCcEEEEcCC
Confidence 3444676 789999999999999999888643
No 203
>PRK07102 short chain dehydrogenase; Provisional
Probab=23.87 E-value=2.9e+02 Score=24.62 Aligned_cols=32 Identities=28% Similarity=0.253 Sum_probs=24.5
Q ss_pred EEEeCCccchHHHHHHHHHHHhCCeEEEEeCCC
Q 019910 144 LVTCGGCQSAHATAVAVSCAERGLKSHLLLRGE 176 (334)
Q Consensus 144 VVt~Gg~qsNh~~AvAaaaa~~Gl~~~ivv~~~ 176 (334)
++-+|+ .|.-|.++|-...+.|.+.+++.+..
T Consensus 4 vlItGa-s~giG~~~a~~l~~~G~~Vi~~~r~~ 35 (243)
T PRK07102 4 ILIIGA-TSDIARACARRYAAAGARLYLAARDV 35 (243)
T ss_pred EEEEcC-CcHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 343555 58899999999999999877776653
No 204
>cd01714 ETF_beta The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=23.86 E-value=3.6e+02 Score=24.32 Aligned_cols=53 Identities=6% Similarity=-0.081 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHhhhcCCCCCCEEEEcCCc----hhHHHHHHHHHHHcCCCCeEEEEEecc
Q 019910 273 LLGVFRLLQYLSQDHLLGRKRAIKFVVDAGT----GTTAVGLGLGAICLGCVPLFNTLLVKL 330 (334)
Q Consensus 273 ~~G~~~la~EI~eq~~~g~~~~D~Vvvp~Gt----Ggt~aGl~~g~k~lg~~~~VigV~~~g 330 (334)
...|.....++.++. .||.|+++... |..+++...+.-..+.-..|+.++..+
T Consensus 93 ~e~~a~al~~~i~~~-----~p~lVL~~~t~~~~~grdlaprlAarLga~lvsdv~~l~~~~ 149 (202)
T cd01714 93 TLATAKALAAAIKKI-----GVDLILTGKQSIDGDTGQVGPLLAELLGWPQITYVSKIEIEG 149 (202)
T ss_pred hHHHHHHHHHHHHHh-----CCCEEEEcCCcccCCcCcHHHHHHHHhCCCccceEEEEEEeC
Confidence 445666666666554 38999999776 778888877776677778888887644
No 205
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=23.80 E-value=1.1e+02 Score=32.48 Aligned_cols=32 Identities=19% Similarity=0.324 Sum_probs=25.7
Q ss_pred CEEEEeCCccchHHHHHHHHHHHhCCeEEEEeCC
Q 019910 142 TDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRG 175 (334)
Q Consensus 142 ~~VVt~Gg~qsNh~~AvAaaaa~~Gl~~~ivv~~ 175 (334)
++||.+|| |-.|.+.|..|++.|.+++++-..
T Consensus 4 ~DVlVVG~--G~AGl~AAi~Aa~~G~~V~lieK~ 35 (589)
T PRK08641 4 GKVIVVGG--GLAGLMATIKAAEAGVHVDLFSLV 35 (589)
T ss_pred ccEEEECc--hHHHHHHHHHHHHcCCcEEEEEcc
Confidence 35565886 779999999999999999887644
No 206
>PRK11609 nicotinamidase/pyrazinamidase; Provisional
Probab=23.72 E-value=1.8e+02 Score=26.08 Aligned_cols=46 Identities=17% Similarity=0.323 Sum_probs=34.4
Q ss_pred HHHhhhHHHHhcCCCEEEEeCCccchHH-HHHHHHHHHhCCeEEEEeCCCC
Q 019910 128 KMDALLPLLEDHIVTDLVTCGGCQSAHA-TAVAVSCAERGLKSHLLLRGEQ 177 (334)
Q Consensus 128 kL~~lL~~a~~~g~~~VVt~Gg~qsNh~-~AvAaaaa~~Gl~~~ivv~~~~ 177 (334)
.|+..| ++.|+++||-||- ..|.+ .++|..|..+|++++++-+...
T Consensus 132 ~L~~~L---~~~gi~~lii~G~-~T~~CV~~Ta~dA~~~gy~v~v~~Da~a 178 (212)
T PRK11609 132 ALDDWL---REHGITELIVMGL-ATDYCVKFTVLDALALGYQVNVITDGCR 178 (212)
T ss_pred cHHHHH---HHcCCCEEEEEEe-ccCHHHHHHHHHHHHCCCEEEEEeeccC
Confidence 354444 4789999998875 56665 5788889999999998887644
No 207
>PRK04284 ornithine carbamoyltransferase; Provisional
Probab=23.68 E-value=2.7e+02 Score=27.47 Aligned_cols=36 Identities=22% Similarity=0.243 Sum_probs=28.8
Q ss_pred CEEEEeCCccchHHHHHHHHHHHhCCeEEEEeCCCC
Q 019910 142 TDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGEQ 177 (334)
Q Consensus 142 ~~VVt~Gg~qsNh~~AvAaaaa~~Gl~~~ivv~~~~ 177 (334)
.+|.-+|-..+|.+++++.+++++|+..+++.|...
T Consensus 156 ~kia~vGD~~~~v~~Sl~~~~~~~g~~v~~~~P~~~ 191 (332)
T PRK04284 156 IKFTYVGDGRNNVANALMQGAAIMGMDFHLVCPKEL 191 (332)
T ss_pred cEEEEecCCCcchHHHHHHHHHHcCCEEEEECCccc
Confidence 356657754468999999999999999999998743
No 208
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=23.63 E-value=1.2e+02 Score=29.48 Aligned_cols=33 Identities=33% Similarity=0.603 Sum_probs=26.0
Q ss_pred EEEeCCccchHHHHHHHHHHHhCCeEEEEeCCCCC
Q 019910 144 LVTCGGCQSAHATAVAVSCAERGLKSHLLLRGEQP 178 (334)
Q Consensus 144 VVt~Gg~qsNh~~AvAaaaa~~Gl~~~ivv~~~~p 178 (334)
|+-.|| |=.|.+.|.+|++.|+++.++.....+
T Consensus 6 viIIG~--GPAGl~AAiya~r~~l~~~li~~~~~~ 38 (305)
T COG0492 6 VIIIGG--GPAGLTAAIYAARAGLKVVLILEGGEP 38 (305)
T ss_pred EEEECC--CHHHHHHHHHHHHcCCCcEEEEecCCc
Confidence 444666 669999999999999998887776543
No 209
>TIGR00379 cobB cobyrinic acid a,c-diamide synthase. This model describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of carboxylic groups at positions A and C of either cobyrinic acid or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation.
Probab=23.62 E-value=5.8e+02 Score=26.03 Aligned_cols=46 Identities=11% Similarity=0.153 Sum_probs=32.9
Q ss_pred HHHHHHhhhcCCCCCCEEEEcCCc-hhHHHHHHHHHHHcCCCCeEEEEEec
Q 019910 280 LQYLSQDHLLGRKRAIKFVVDAGT-GTTAVGLGLGAICLGCVPLFNTLLVK 329 (334)
Q Consensus 280 a~EI~eq~~~g~~~~D~Vvvp~Gt-Ggt~aGl~~g~k~lg~~~~VigV~~~ 329 (334)
..||++++ +.|-.+|+++.+ +.++.-+..+++.+.+..+|.||-+-
T Consensus 102 ~adlAk~l----~~pVILV~~~~~~~~t~~al~~~~~~~~~~i~i~GvIlN 148 (449)
T TIGR00379 102 TASVAKAL----DAPIVLVMNCQRLSRSAAAIVLGYRSFDPGVKLKGVILN 148 (449)
T ss_pred HHHHHHHh----CCCEEEEECCchHHHHHHHHHHHHHhhCCCCCEEEEEEE
Confidence 45787776 246677777775 56777777778777778888887653
No 210
>cd06285 PBP1_LacI_like_7 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=23.62 E-value=2.4e+02 Score=25.22 Aligned_cols=34 Identities=12% Similarity=-0.107 Sum_probs=25.8
Q ss_pred CCCEEEEcCCchhHHHHHHHHHHHcCC----CCeEEEEEe
Q 019910 293 RAIKFVVDAGTGTTAVGLGLGAICLGC----VPLFNTLLV 328 (334)
Q Consensus 293 ~~D~Vvvp~GtGgt~aGl~~g~k~lg~----~~~VigV~~ 328 (334)
.+|.||+. +..++.|+..++++.|. ++.|+|.+-
T Consensus 175 ~~~ai~~~--~d~~a~g~~~~l~~~g~~~p~di~iig~d~ 212 (265)
T cd06285 175 PPTAIFAV--NDFAAIGVMGAARDRGLRVPDDVALVGYND 212 (265)
T ss_pred CCCEEEEc--CcHHHHHHHHHHHHcCCCCCcceEEEeecC
Confidence 57888765 55678899999999885 456777764
No 211
>PRK09219 xanthine phosphoribosyltransferase; Validated
Probab=23.51 E-value=2.8e+02 Score=25.01 Aligned_cols=62 Identities=18% Similarity=0.235 Sum_probs=33.8
Q ss_pred EEEeCCCC-CCCChhHHHHHHHhhhHH-HHhcCCCEEEEeCCccchHHHHHHHHHHHhCCeEEEEeCC
Q 019910 110 YVVRDDLL-HPLVNGNKARKMDALLPL-LEDHIVTDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRG 175 (334)
Q Consensus 110 yvKrDDl~-~p~~gGnK~RkL~~lL~~-a~~~g~~~VVt~Gg~qsNh~~AvAaaaa~~Gl~~~ivv~~ 175 (334)
|+|-+|++ |+ +..--.|.+...+.+ ....+.+.|++... +--..| ++.|.++|++++++=+.
T Consensus 19 ~~~~~~~~~~~-~~P~~l~~i~~~la~~~~~~~~D~Ivg~e~--~GiplA-~~lA~~Lg~p~v~vRK~ 82 (189)
T PRK09219 19 ILKVDSFLNHQ-VDPKLMNEIGKEFARRFKDEGITKILTIEA--SGIAPA-VMAALALGVPVVFAKKK 82 (189)
T ss_pred EEEEhhhhccc-cCHHHHHHHHHHHHHHhccCCCCEEEEEcc--ccHHHH-HHHHHHHCCCEEEEEEC
Confidence 56777775 43 333334454444433 34456788886543 223333 22466789988777443
No 212
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=23.50 E-value=1.3e+02 Score=27.72 Aligned_cols=33 Identities=3% Similarity=-0.100 Sum_probs=21.0
Q ss_pred EEEEcCCchhHHHHHHHHHHHcCCCCeEEEEEecc
Q 019910 296 KFVVDAGTGTTAVGLGLGAICLGCVPLFNTLLVKL 330 (334)
Q Consensus 296 ~Vvvp~GtGgt~aGl~~g~k~lg~~~~VigV~~~g 330 (334)
.+-+.||+|..+..++.. ...+.++|+||+++-
T Consensus 60 vLDlGcGtG~~~~~l~~~--~~~~~~~v~gvD~S~ 92 (247)
T PRK15451 60 VYDLGCSLGAATLSVRRN--IHHDNCKIIAIDNSP 92 (247)
T ss_pred EEEEcccCCHHHHHHHHh--cCCCCCeEEEEeCCH
Confidence 455666666655444322 235789999999863
No 213
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=23.36 E-value=90 Score=32.28 Aligned_cols=29 Identities=28% Similarity=0.371 Sum_probs=23.0
Q ss_pred EEEEeCCccchHHHHHHHHHHHhCCeEEEEeC
Q 019910 143 DLVTCGGCQSAHATAVAVSCAERGLKSHLLLR 174 (334)
Q Consensus 143 ~VVt~Gg~qsNh~~AvAaaaa~~Gl~~~ivv~ 174 (334)
+||.+|+ | .+.+.|+.|++.|.+++++=.
T Consensus 9 DVvVVG~--G-aGl~aA~~aa~~G~~V~vlEk 37 (513)
T PRK12837 9 DVLVAGS--G-GGVAGAYTAAREGLSVALVEA 37 (513)
T ss_pred CEEEECc--h-HHHHHHHHHHHCCCcEEEEec
Confidence 3444886 8 899999999999998776643
No 214
>PRK14987 gluconate operon transcriptional regulator; Provisional
Probab=23.36 E-value=2.1e+02 Score=26.88 Aligned_cols=34 Identities=15% Similarity=0.049 Sum_probs=26.9
Q ss_pred CCCCEEEEcCCchhHHHHHHHHHHHcCC----CCeEEEEE
Q 019910 292 KRAIKFVVDAGTGTTAVGLGLGAICLGC----VPLFNTLL 327 (334)
Q Consensus 292 ~~~D~Vvvp~GtGgt~aGl~~g~k~lg~----~~~VigV~ 327 (334)
+.||.||+ .+-.++.|+..+++.+|. ++.|+|++
T Consensus 238 ~~~~ai~~--~nD~~A~g~~~al~~~g~~vP~disvigfD 275 (331)
T PRK14987 238 PQLDGVFC--TNDDLAVGAAFECQRLGLKVPDDMAIAGFH 275 (331)
T ss_pred CCCCEEEE--CCcHHHHHHHHHHHHcCCCCCCccEEEeeC
Confidence 35888886 466788999999999985 56788876
No 215
>PRK13054 lipid kinase; Reviewed
Probab=23.34 E-value=1.3e+02 Score=28.58 Aligned_cols=38 Identities=13% Similarity=-0.035 Sum_probs=22.5
Q ss_pred CCEEEEcCCchhHHHHHHHHHHHcCCCC-eEEEEEeccCC
Q 019910 294 AIKFVVDAGTGTTAVGLGLGAICLGCVP-LFNTLLVKLSR 332 (334)
Q Consensus 294 ~D~Vvvp~GtGgt~aGl~~g~k~lg~~~-~VigV~~~gs~ 332 (334)
+|. ||.+|+=||+..++.++....... -.+||-|.||.
T Consensus 57 ~d~-vvv~GGDGTl~evv~~l~~~~~~~~~~lgiiP~GTg 95 (300)
T PRK13054 57 VAT-VIAGGGDGTINEVATALAQLEGDARPALGILPLGTA 95 (300)
T ss_pred CCE-EEEECCccHHHHHHHHHHhhccCCCCcEEEEeCCcH
Confidence 454 445566566777777776442221 23788888774
No 216
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=23.33 E-value=99 Score=22.75 Aligned_cols=26 Identities=19% Similarity=0.205 Sum_probs=18.3
Q ss_pred EcCCchhHHHHHHHHHHHcCCCCeEEEEEec
Q 019910 299 VDAGTGTTAVGLGLGAICLGCVPLFNTLLVK 329 (334)
Q Consensus 299 vp~GtGgt~aGl~~g~k~lg~~~~VigV~~~ 329 (334)
+.+|+|-++..+... +..+|+|++++
T Consensus 3 iG~G~G~~~~~l~~~-----~~~~v~~~D~~ 28 (95)
T PF08241_consen 3 IGCGTGRFAAALAKR-----GGASVTGIDIS 28 (95)
T ss_dssp ET-TTSHHHHHHHHT-----TTCEEEEEES-
T ss_pred ecCcCCHHHHHHHhc-----cCCEEEEEeCC
Confidence 567888777666643 78999999985
No 217
>smart00046 DAGKc Diacylglycerol kinase catalytic domain (presumed). Diacylglycerol (DAG) is a second messenger that acts as a protein kinase C activator. DAG can be produced from the hydrolysis of phosphatidylinositol 4,5-bisphosphate (PIP2) by a phosphoinositide-specific phospholipase C and by the degradation of phosphatidylcholine (PC) by a phospholipase C or the concerted actions of phospholipase D and phosphatidate phosphohydrolase. This domain is presumed to be the catalytic domain. Bacterial homologues areknown.
Probab=23.24 E-value=1.5e+02 Score=24.37 Aligned_cols=36 Identities=11% Similarity=-0.274 Sum_probs=23.6
Q ss_pred EEEcCCchhHHHHHHHHHHHcCCC--CeEEEEEeccCC
Q 019910 297 FVVDAGTGTTAVGLGLGAICLGCV--PLFNTLLVKLSR 332 (334)
Q Consensus 297 Vvvp~GtGgt~aGl~~g~k~lg~~--~~VigV~~~gs~ 332 (334)
.|+.+|+=||+.-+..++...... .-.+|+-|.||.
T Consensus 52 ~vvv~GGDGTi~~vvn~l~~~~~~~~~~plgiiP~GTg 89 (124)
T smart00046 52 RVLVCGGDGTVGWVLNALDKRELPLPEPPVAVLPLGTG 89 (124)
T ss_pred EEEEEccccHHHHHHHHHHhcccccCCCcEEEeCCCCh
Confidence 455577777788888887654422 135888888763
No 218
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=23.02 E-value=96 Score=33.28 Aligned_cols=31 Identities=16% Similarity=0.289 Sum_probs=24.7
Q ss_pred EEEEeCCccchHHHHHHHHHHHhCCeEEEEeCC
Q 019910 143 DLVTCGGCQSAHATAVAVSCAERGLKSHLLLRG 175 (334)
Q Consensus 143 ~VVt~Gg~qsNh~~AvAaaaa~~Gl~~~ivv~~ 175 (334)
+|+.+|| |..|.+.|..|++.|.+++++-..
T Consensus 37 DVlVVG~--G~AGl~AAi~Aae~G~~VilieK~ 67 (640)
T PRK07573 37 DVIVVGT--GLAGASAAATLGELGYNVKVFCYQ 67 (640)
T ss_pred CEEEECc--cHHHHHHHHHHHHcCCcEEEEecC
Confidence 3555776 789999999999999998887543
No 219
>PRK12831 putative oxidoreductase; Provisional
Probab=22.99 E-value=2.5e+02 Score=28.64 Aligned_cols=33 Identities=21% Similarity=0.354 Sum_probs=27.7
Q ss_pred CEEEEeCCccchHHHHHHHHHHHhCCeEEEEeCCC
Q 019910 142 TDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGE 176 (334)
Q Consensus 142 ~~VVt~Gg~qsNh~~AvAaaaa~~Gl~~~ivv~~~ 176 (334)
+.|+..|| ||.+.-+|..+.++|.+++++.+..
T Consensus 282 k~VvVIGg--G~va~d~A~~l~r~Ga~Vtlv~r~~ 314 (464)
T PRK12831 282 KKVAVVGG--GNVAMDAARTALRLGAEVHIVYRRS 314 (464)
T ss_pred CeEEEECC--cHHHHHHHHHHHHcCCEEEEEeecC
Confidence 45555887 8999999999999999988888754
No 220
>cd06312 PBP1_ABC_sugar_binding_like_4 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=22.93 E-value=5.6e+02 Score=22.99 Aligned_cols=34 Identities=6% Similarity=-0.111 Sum_probs=26.0
Q ss_pred CCCEEEEcCCchhHHHHHHHHHHHcCC--CCeEEEEEe
Q 019910 293 RAIKFVVDAGTGTTAVGLGLGAICLGC--VPLFNTLLV 328 (334)
Q Consensus 293 ~~D~Vvvp~GtGgt~aGl~~g~k~lg~--~~~VigV~~ 328 (334)
.+|.||+.. +.++.|+..+++.+|. ++.|+|++-
T Consensus 183 ~~~aI~~~~--d~~a~g~~~al~~~g~~~di~vvg~d~ 218 (271)
T cd06312 183 DVDAVLTLG--APSAAPAAKALKQAGLKGKVKLGGFDL 218 (271)
T ss_pred CccEEEEeC--CccchHHHHHHHhcCCCCCeEEEEecC
Confidence 478777654 5678899999999986 677888764
No 221
>COG0455 flhG Antiactivator of flagellar biosynthesis FleN, an ATPase [Cell motility]
Probab=22.80 E-value=5e+02 Score=24.70 Aligned_cols=26 Identities=19% Similarity=0.226 Sum_probs=18.4
Q ss_pred chHHHHHHHHHHHhCCeEEEEeCCCC
Q 019910 152 SAHATAVAVSCAERGLKSHLLLRGEQ 177 (334)
Q Consensus 152 sNh~~AvAaaaa~~Gl~~~ivv~~~~ 177 (334)
+|-..-+++++++.+-+.+++++.+.
T Consensus 17 Ttitanlga~~~~~~~k~V~~iDaD~ 42 (262)
T COG0455 17 TTITANLGAALAALGGKVVLLIDADL 42 (262)
T ss_pred HHHHHhHHHHHHhhCCCeEEEEecCC
Confidence 56777786666667777768887755
No 222
>TIGR02634 xylF D-xylose ABC transporter, substrate-binding protein. Members of this family are periplasmic (when in Gram-negative bacteria) binding proteins for D-xylose import by a high-affinity ATP-binding cassette (ABC) transporter.
Probab=22.77 E-value=6.3e+02 Score=23.53 Aligned_cols=44 Identities=16% Similarity=0.042 Sum_probs=30.5
Q ss_pred hhhHHHHhcCCCEEEEeCCccchHHHHHHHHHHHhCCeEEEEeCC
Q 019910 131 ALLPLLEDHIVTDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRG 175 (334)
Q Consensus 131 ~lL~~a~~~g~~~VVt~Gg~qsNh~~AvAaaaa~~Gl~~~ivv~~ 175 (334)
..+..+...+++.||.++. ..+........+.+.|++++++-+.
T Consensus 45 ~~i~~l~~~~vDgIIi~~~-~~~~~~~~l~~~~~~~iPvV~~d~~ 88 (302)
T TIGR02634 45 SQIENLIARGVDVLVIIPQ-NGQVLSNAVQEAKDEGIKVVAYDRL 88 (302)
T ss_pred HHHHHHHHcCCCEEEEeCC-ChhHHHHHHHHHHHCCCeEEEecCc
Confidence 3556677889999997643 3444445556678899999888654
No 223
>PRK08401 L-aspartate oxidase; Provisional
Probab=22.73 E-value=1.2e+02 Score=31.02 Aligned_cols=31 Identities=23% Similarity=0.400 Sum_probs=24.6
Q ss_pred EEEEeCCccchHHHHHHHHHHHhCCeEEEEeCC
Q 019910 143 DLVTCGGCQSAHATAVAVSCAERGLKSHLLLRG 175 (334)
Q Consensus 143 ~VVt~Gg~qsNh~~AvAaaaa~~Gl~~~ivv~~ 175 (334)
+||..|+ |..|.+.|..|++.|.+++++-..
T Consensus 3 DVvVVGa--G~AGl~AAi~aae~G~~V~liek~ 33 (466)
T PRK08401 3 KVGIVGG--GLAGLTAAISLAKKGFDVTIIGPG 33 (466)
T ss_pred eEEEECc--cHHHHHHHHHHHHCCCeEEEEeCC
Confidence 4555776 789999999999999998777543
No 224
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=22.58 E-value=1e+02 Score=30.01 Aligned_cols=30 Identities=23% Similarity=0.326 Sum_probs=24.3
Q ss_pred EEEeCCccchHHHHHHHHHHHhCCeEEEEeCC
Q 019910 144 LVTCGGCQSAHATAVAVSCAERGLKSHLLLRG 175 (334)
Q Consensus 144 VVt~Gg~qsNh~~AvAaaaa~~Gl~~~ivv~~ 175 (334)
|+-.|| |-.|.++|.+.++.|++++|+=+.
T Consensus 4 V~IvGg--G~~Gl~~A~~L~~~G~~v~l~E~~ 33 (374)
T PRK06617 4 TVILGC--GLSGMLTALSFAQKGIKTTIFESK 33 (374)
T ss_pred EEEECC--CHHHHHHHHHHHcCCCeEEEecCC
Confidence 444676 779999999999999999888543
No 225
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=22.57 E-value=1.9e+02 Score=27.45 Aligned_cols=33 Identities=18% Similarity=0.161 Sum_probs=22.5
Q ss_pred EEEEcCCchhHHHHHHHHHHHcCCCCeEEEEEecc
Q 019910 296 KFVVDAGTGTTAVGLGLGAICLGCVPLFNTLLVKL 330 (334)
Q Consensus 296 ~Vvvp~GtGgt~aGl~~g~k~lg~~~~VigV~~~g 330 (334)
.-|+..|+|+-..++..+ ...+..+|+||+++.
T Consensus 116 ~~vLDlG~GsG~i~l~la--~~~~~~~v~avDis~ 148 (284)
T TIGR00536 116 LHILDLGTGSGCIALALA--YEFPNAEVIAVDISP 148 (284)
T ss_pred CEEEEEeccHhHHHHHHH--HHCCCCEEEEEECCH
Confidence 356777777766555544 345778999999864
No 226
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=22.54 E-value=3.5e+02 Score=24.07 Aligned_cols=54 Identities=15% Similarity=0.209 Sum_probs=35.4
Q ss_pred eCCccchHHHHHHHHHHHhCCeEEEEeCCCCCccccchhHHHHHCC-eEEEECCCChHHHHHH
Q 019910 147 CGGCQSAHATAVAVSCAERGLKSHLLLRGEQPQILTGYNLISTIYG-KVTYVPRTHYAHRIEM 208 (334)
Q Consensus 147 ~Gg~qsNh~~AvAaaaa~~Gl~~~ivv~~~~p~~~~gn~~~~~~~G-~V~~v~~~~y~~~~~~ 208 (334)
+|+ +|+.|..++.+....|.+..++++...... ....+..| +++.++ |++.+.+
T Consensus 4 ~Ga-tG~~G~~v~~~L~~~~~~V~~l~R~~~~~~----~~~l~~~g~~vv~~d---~~~~~~l 58 (233)
T PF05368_consen 4 TGA-TGNQGRSVVRALLSAGFSVRALVRDPSSDR----AQQLQALGAEVVEAD---YDDPESL 58 (233)
T ss_dssp ETT-TSHHHHHHHHHHHHTTGCEEEEESSSHHHH----HHHHHHTTTEEEES----TT-HHHH
T ss_pred ECC-ccHHHHHHHHHHHhCCCCcEEEEeccchhh----hhhhhcccceEeecc---cCCHHHH
Confidence 454 799999999999999999999999752111 12234468 776543 4444444
No 227
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=22.47 E-value=1.2e+02 Score=26.71 Aligned_cols=40 Identities=25% Similarity=0.312 Sum_probs=26.0
Q ss_pred HHHhhhHHHHhcCCCEEEEeCCccchHHHHHHHHHHHhCCeEEEEeCC
Q 019910 128 KMDALLPLLEDHIVTDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRG 175 (334)
Q Consensus 128 kL~~lL~~a~~~g~~~VVt~Gg~qsNh~~AvAaaaa~~Gl~~~ivv~~ 175 (334)
-+...+..+++.|++.|| .|+ . +.-+|+++|++++++..+
T Consensus 113 e~~~~i~~~~~~G~~viV-Gg~----~---~~~~A~~~gl~~v~i~sg 152 (176)
T PF06506_consen 113 EIEAAIKQAKAEGVDVIV-GGG----V---VCRLARKLGLPGVLIESG 152 (176)
T ss_dssp HHHHHHHHHHHTT--EEE-ESH----H---HHHHHHHTTSEEEESS--
T ss_pred HHHHHHHHHHHcCCcEEE-CCH----H---HHHHHHHcCCcEEEEEec
Confidence 456668888999999888 332 2 356679999998777543
No 228
>PLN03050 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional
Probab=22.41 E-value=3e+02 Score=25.96 Aligned_cols=32 Identities=19% Similarity=0.241 Sum_probs=23.4
Q ss_pred CEEEEeCCccchH---HHHHHHHHHHhCCeEEEEeCC
Q 019910 142 TDLVTCGGCQSAH---ATAVAVSCAERGLKSHLLLRG 175 (334)
Q Consensus 142 ~~VVt~Gg~qsNh---~~AvAaaaa~~Gl~~~ivv~~ 175 (334)
+.+|-||. ||. |.++|.+.+..|+++.+|++.
T Consensus 62 ~V~VlcG~--GNNGGDGlv~AR~L~~~G~~V~v~~~~ 96 (246)
T PLN03050 62 RVLLVCGP--GNNGGDGLVAARHLAHFGYEVTVCYPK 96 (246)
T ss_pred eEEEEECC--CCCchhHHHHHHHHHHCCCeEEEEEcC
Confidence 44566885 665 566777777789999999954
No 229
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=22.29 E-value=1.6e+02 Score=29.01 Aligned_cols=31 Identities=29% Similarity=0.324 Sum_probs=19.5
Q ss_pred EEEcCCchhHHHHHHHHHHHcCCCCeEEEEEec
Q 019910 297 FVVDAGTGTTAVGLGLGAICLGCVPLFNTLLVK 329 (334)
Q Consensus 297 Vvvp~GtGgt~aGl~~g~k~lg~~~~VigV~~~ 329 (334)
+++.+|||+-+.-+...- .+ ++.+|+||+++
T Consensus 151 ~ildlgtGSGaIslsll~-~L-~~~~v~AiD~S 181 (328)
T KOG2904|consen 151 HILDLGTGSGAISLSLLH-GL-PQCTVTAIDVS 181 (328)
T ss_pred eEEEecCCccHHHHHHHh-cC-CCceEEEEecc
Confidence 566666666554444322 23 48999999986
No 230
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=22.11 E-value=1.5e+02 Score=25.56 Aligned_cols=27 Identities=26% Similarity=0.382 Sum_probs=17.2
Q ss_pred eCCccchHHHHHHHHHHHhCCeEEEEeCC
Q 019910 147 CGGCQSAHATAVAVSCAERGLKSHLLLRG 175 (334)
Q Consensus 147 ~Gg~qsNh~~AvAaaaa~~Gl~~~ivv~~ 175 (334)
.|+ |-+|.++|+.+++.|++-++++..
T Consensus 3 IGa--G~aGl~~a~~l~~~g~~~v~v~e~ 29 (203)
T PF13738_consen 3 IGA--GPAGLAAAAHLLERGIDPVVVLER 29 (203)
T ss_dssp E----SHHHHHHHHHHHHTT---EEEEES
T ss_pred ECc--CHHHHHHHHHHHhCCCCcEEEEeC
Confidence 455 669999999999999994444443
No 231
>PF11017 DUF2855: Protein of unknown function (DUF2855); InterPro: IPR021276 This family of proteins has no known function.
Probab=22.09 E-value=2.4e+02 Score=27.82 Aligned_cols=41 Identities=22% Similarity=0.204 Sum_probs=35.4
Q ss_pred CCEEEEcCCchhHHHHHHHHHHHcCCCCeEEEEEeccCCCC
Q 019910 294 AIKFVVDAGTGTTAVGLGLGAICLGCVPLFNTLLVKLSRGF 334 (334)
Q Consensus 294 ~D~Vvvp~GtGgt~aGl~~g~k~lg~~~~VigV~~~gs~~~ 334 (334)
...||+-+.|.=|+.|++..++.-+.+.+|||+.=.+..+|
T Consensus 136 a~~vvl~SASSKTA~glA~~L~~~~~~~~~vglTS~~N~~F 176 (314)
T PF11017_consen 136 AAQVVLSSASSKTAIGLAYCLKKQRGPPKVVGLTSARNVAF 176 (314)
T ss_pred ccEEEEeccchHHHHHHHHHhhccCCCceEEEEecCcchhh
Confidence 47799999999999999999998788999999987766554
No 232
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=22.02 E-value=1e+02 Score=31.78 Aligned_cols=30 Identities=23% Similarity=0.563 Sum_probs=25.1
Q ss_pred EEEEeCCccchHHHHHHHHHHHhCCeEEEEeC
Q 019910 143 DLVTCGGCQSAHATAVAVSCAERGLKSHLLLR 174 (334)
Q Consensus 143 ~VVt~Gg~qsNh~~AvAaaaa~~Gl~~~ivv~ 174 (334)
+|+-.|| |-.|.+.|..+++.|++++++.+
T Consensus 213 dvvIIGg--GpaGl~aA~~la~~G~~v~li~~ 242 (517)
T PRK15317 213 DVLVVGG--GPAGAAAAIYAARKGIRTGIVAE 242 (517)
T ss_pred CEEEECC--CHHHHHHHHHHHHCCCcEEEEec
Confidence 4444777 77999999999999999999954
No 233
>cd06286 PBP1_CcpB_like Ligand-binding domain of a novel transcription factor implicated in catabolite repression in Bacillus and Clostridium species. This group includes the ligand-binding domain of a novel transcription factor implicated in catabolite repression in Bacillus and Clostridium species. CcpB is 30% identical in sequence to CcpA which functions as the major transcriptional regulator of carbon catabolite repression/regulation (CCR), a process in which enzymes necessary for the metabolism of alternative sugars are inhibited in the presence of glucose. Like CcpA, the DNA-binding protein CcpB exerts its catabolite-repressing effect by a mechanism dependent on the presence of HPr(Ser-P), the small phosphocarrier proteins of the phosphoenolpyruvate-sugar phosphotransferase system, but with a less significant degree.
Probab=21.96 E-value=2.4e+02 Score=25.08 Aligned_cols=35 Identities=17% Similarity=0.038 Sum_probs=26.4
Q ss_pred CCCCEEEEcCCchhHHHHHHHHHHHcCC----CCeEEEEEe
Q 019910 292 KRAIKFVVDAGTGTTAVGLGLGAICLGC----VPLFNTLLV 328 (334)
Q Consensus 292 ~~~D~Vvvp~GtGgt~aGl~~g~k~lg~----~~~VigV~~ 328 (334)
..+|.||+ .+...+.|+..+++.+|. ++.|+|++-
T Consensus 174 ~~~~ai~~--~~d~~a~~~~~~l~~~g~~ip~di~v~g~d~ 212 (260)
T cd06286 174 DRPDAIFT--GSDEVAAGIITEAKKQGIRVPEDLAIIGFDN 212 (260)
T ss_pred CCCCEEEE--cchHHHHHHHHHHHHcCCCCCcceEEEeecC
Confidence 35787774 455778899999999985 567888763
No 234
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=21.86 E-value=2.4e+02 Score=29.02 Aligned_cols=34 Identities=15% Similarity=0.006 Sum_probs=26.0
Q ss_pred EEEEcCCchhHHHHHHHHHHHcCCCCeEEEEEec
Q 019910 296 KFVVDAGTGTTAVGLGLGAICLGCVPLFNTLLVK 329 (334)
Q Consensus 296 ~Vvvp~GtGgt~aGl~~g~k~lg~~~~VigV~~~ 329 (334)
.++|.+|+|-+..-.+.+.+..+...+|++|+-.
T Consensus 190 VldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn 223 (448)
T PF05185_consen 190 VLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKN 223 (448)
T ss_dssp EEEES-TTSHHHHHHHHTTHHHCCESEEEEEESS
T ss_pred EEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCC
Confidence 5667777777777777788888889999999853
No 235
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=21.79 E-value=1.1e+02 Score=32.47 Aligned_cols=31 Identities=23% Similarity=0.349 Sum_probs=24.2
Q ss_pred EEEEeCCccchHHHHHHHHHHHhCCeEEEEeCC
Q 019910 143 DLVTCGGCQSAHATAVAVSCAERGLKSHLLLRG 175 (334)
Q Consensus 143 ~VVt~Gg~qsNh~~AvAaaaa~~Gl~~~ivv~~ 175 (334)
+||..|| |..|.+.|..|++.|.+++++-..
T Consensus 14 DVlVIG~--G~AGl~AAi~Aa~~G~~V~vleK~ 44 (591)
T PRK07057 14 DVVIVGA--GGSGMRASLQLARAGLSVAVLSKV 44 (591)
T ss_pred CEEEECc--cHHHHHHHHHHHHCCCcEEEEecc
Confidence 3444786 789999999999999988776543
No 236
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=21.76 E-value=64 Score=30.73 Aligned_cols=32 Identities=22% Similarity=0.251 Sum_probs=26.5
Q ss_pred EEEEcCCchhHHHHHHHHHHHcCCCCeEEEEEec
Q 019910 296 KFVVDAGTGTTAVGLGLGAICLGCVPLFNTLLVK 329 (334)
Q Consensus 296 ~Vvvp~GtGgt~aGl~~g~k~lg~~~~VigV~~~ 329 (334)
.-|++.|+|.-+.||.++-+. ++.+|+||+..
T Consensus 46 ~~IlDlGaG~G~l~L~la~r~--~~a~I~~VEiq 77 (248)
T COG4123 46 GRILDLGAGNGALGLLLAQRT--EKAKIVGVEIQ 77 (248)
T ss_pred CeEEEecCCcCHHHHHHhccC--CCCcEEEEEeC
Confidence 468999999999999987664 44999999974
No 237
>cd06337 PBP1_ABC_ligand_binding_like_4 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=21.69 E-value=2.2e+02 Score=27.41 Aligned_cols=54 Identities=22% Similarity=0.325 Sum_probs=35.4
Q ss_pred EEEeCCCCCCCChhHHHHHHHhhhHHHHhcCCCEEEEeCCccchHHHHHHHHHHHhCCeEEE
Q 019910 110 YVVRDDLLHPLVNGNKARKMDALLPLLEDHIVTDLVTCGGCQSAHATAVAVSCAERGLKSHL 171 (334)
Q Consensus 110 yvKrDDl~~p~~gGnK~RkL~~lL~~a~~~g~~~VVt~Gg~qsNh~~AvAaaaa~~Gl~~~i 171 (334)
++.+||...|..+..-+|+| + .+.++.-||. +..|+...+++-.+.+.|++++.
T Consensus 45 lv~~D~~~~p~~a~~~a~~l---i---~~d~v~~iiG--~~~s~~~~a~~~~~~~~~ip~i~ 98 (357)
T cd06337 45 IIVRDSQSNPNRAGLVAQEL---I---LTDKVDLLLA--GGTPDTTNPVSDQCEANGVPCIS 98 (357)
T ss_pred EEEecCCCCHHHHHHHHHHH---H---hccCccEEEe--cCCcchhhHHHHHHHHhCCCeEE
Confidence 45567776775444444444 2 2446666663 34577788888899999999876
No 238
>cd06328 PBP1_SBP_like_2 Periplasmic solute-binding domain of active transport proteins found in gram-negative and gram-positive bacteria. Periplasmic solute-binding domain of active transport proteins found in gram-negative and gram-positive bacteria. Members of this group are initial receptors in the process of active transport across cellular membrane, but their substrate specificities are not known in detail. However, they closely resemble the group of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus it may also be involved in transport of amino acids.
Probab=21.64 E-value=6.9e+02 Score=23.59 Aligned_cols=55 Identities=31% Similarity=0.252 Sum_probs=34.9
Q ss_pred EEEeCCCCCCCChhHHHHHHHhhhHHHHhcCCCEEEEeCCccchHHHHHHHHHHHhCCeEEEE
Q 019910 110 YVVRDDLLHPLVNGNKARKMDALLPLLEDHIVTDLVTCGGCQSAHATAVAVSCAERGLKSHLL 172 (334)
Q Consensus 110 yvKrDDl~~p~~gGnK~RkL~~lL~~a~~~g~~~VVt~Gg~qsNh~~AvAaaaa~~Gl~~~iv 172 (334)
++.+||...|..+-...|+| + .+.++.-|+ |+..|.-+.+++-.+.+.+++.+..
T Consensus 44 lv~~D~~~~p~~a~~~~~~l---i---~~~~V~avv--G~~~S~~~~a~~~~~~~~~ip~i~~ 98 (333)
T cd06328 44 VIVKDDAGNPEVAVSLAREL---I---GDDGVDILV--GSTSSGVALAVLPVAEENKKILIVE 98 (333)
T ss_pred EEEecCCCChHHHHHHHHHH---H---HhcCCeEEE--ccCCcHHHHHHHHHHHHhCCcEEec
Confidence 44556666774444445554 2 234666665 4445677788888899999988764
No 239
>PRK15395 methyl-galactoside ABC transporter galactose-binding periplasmic protein MglB; Provisional
Probab=21.63 E-value=7e+02 Score=23.68 Aligned_cols=34 Identities=6% Similarity=-0.130 Sum_probs=27.2
Q ss_pred CCCEEEEcCCchhHHHHHHHHHHHcCC-CCeEEEEEe
Q 019910 293 RAIKFVVDAGTGTTAVGLGLGAICLGC-VPLFNTLLV 328 (334)
Q Consensus 293 ~~D~Vvvp~GtGgt~aGl~~g~k~lg~-~~~VigV~~ 328 (334)
++|.||+ .+..++.|+..+++..|. ++.|+|++-
T Consensus 225 ~~~ai~~--~~d~~A~gvl~al~~~Gl~~vpVvg~D~ 259 (330)
T PRK15395 225 KIEVVIA--NNDAMAMGAVEALKAHNKSSIPVFGVDA 259 (330)
T ss_pred CeeEEEE--CCchHHHHHHHHHHhcCCCCCeEEeeCC
Confidence 4677764 466778899999999999 888888864
No 240
>PRK10015 oxidoreductase; Provisional
Probab=21.59 E-value=1.4e+02 Score=30.10 Aligned_cols=35 Identities=23% Similarity=0.420 Sum_probs=26.2
Q ss_pred CCEEEEeCCccchHHHHHHHHHHHhCCeEEEEeCCCCC
Q 019910 141 VTDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGEQP 178 (334)
Q Consensus 141 ~~~VVt~Gg~qsNh~~AvAaaaa~~Gl~~~ivv~~~~p 178 (334)
.+.|| .|| |-.|.+.|+.+++.|+++.++=+...|
T Consensus 6 ~DViI-VGg--GpAG~~aA~~LA~~G~~VlliEr~~~~ 40 (429)
T PRK10015 6 FDAIV-VGA--GVAGSVAALVMARAGLDVLVIERGDSA 40 (429)
T ss_pred cCEEE-ECc--CHHHHHHHHHHHhCCCeEEEEecCCCC
Confidence 45555 676 678999999999999997777554443
No 241
>TIGR01744 XPRTase xanthine phosphoribosyltransferase. This model represent a xanthine-specific phosphoribosyltransferase of Bacillus subtilis and closely related proteins from other species, mostly from other Gram-positive bacteria. The adjacent gene is a xanthine transporter; B. subtilis can import xanthine for the purine salvage pathway or for catabolism to obtain nitrogen.
Probab=21.58 E-value=3.3e+02 Score=24.60 Aligned_cols=62 Identities=15% Similarity=0.188 Sum_probs=35.5
Q ss_pred EEEeCCCCCCCChhHHHHHHHhhhHH-HHhcCCCEEEEeCCccchHHHHHHH-HHHHhCCeEEEEeCC
Q 019910 110 YVVRDDLLHPLVNGNKARKMDALLPL-LEDHIVTDLVTCGGCQSAHATAVAV-SCAERGLKSHLLLRG 175 (334)
Q Consensus 110 yvKrDDl~~p~~gGnK~RkL~~lL~~-a~~~g~~~VVt~Gg~qsNh~~AvAa-aaa~~Gl~~~ivv~~ 175 (334)
++|-+++.++.....-.+.+...+.. ..+.+.+.|++... -+..+|. .|.++|++++++=+.
T Consensus 19 ~i~~~~~~~~~~~p~~l~~v~~~l~~~~~~~~~d~Vv~~ea----~Gi~la~~lA~~Lg~p~v~vRK~ 82 (191)
T TIGR01744 19 ILKVDSFLNHQIDPKLMQEVGEEFARRFADDGITKIVTIEA----SGIAPAIMTGLKLGVPVVFARKK 82 (191)
T ss_pred EEEEehhhccccCHHHHHHHHHHHHHHhccCCCCEEEEEcc----ccHHHHHHHHHHHCCCEEEEEeC
Confidence 35556665543344445555444433 34557788887543 2334443 467789998887554
No 242
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=21.50 E-value=3.3e+02 Score=26.19 Aligned_cols=56 Identities=27% Similarity=0.283 Sum_probs=37.7
Q ss_pred CCCEEEEeCCccchHHHHHHHHHHHhCCeEEEEeCCCCCccccchhHHHHHCC-eEEEEC
Q 019910 140 IVTDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGEQPQILTGYNLISTIYG-KVTYVP 198 (334)
Q Consensus 140 g~~~VVt~Gg~qsNh~~AvAaaaa~~Gl~~~ivv~~~~p~~~~gn~~~~~~~G-~V~~v~ 198 (334)
+.+.||| |+ +|.-|.++|-..++.|.+.+++-|....-... ...+-..+| +|...+
T Consensus 6 ~~~~lIT-GA-SsGIG~~~A~~lA~~g~~liLvaR~~~kL~~l-a~~l~~~~~v~v~vi~ 62 (265)
T COG0300 6 GKTALIT-GA-SSGIGAELAKQLARRGYNLILVARREDKLEAL-AKELEDKTGVEVEVIP 62 (265)
T ss_pred CcEEEEE-CC-CchHHHHHHHHHHHCCCEEEEEeCcHHHHHHH-HHHHHHhhCceEEEEE
Confidence 3445564 54 68899999999999999999999985432211 123445567 665554
No 243
>PRK00856 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional
Probab=21.45 E-value=3.3e+02 Score=26.47 Aligned_cols=57 Identities=18% Similarity=0.172 Sum_probs=37.6
Q ss_pred EEEEeCCc-cchHHHHHHHHHHHhCCeEEEEeCCCC-Cccc----cchhHHHHHCC-eEEEECC
Q 019910 143 DLVTCGGC-QSAHATAVAVSCAERGLKSHLLLRGEQ-PQIL----TGYNLISTIYG-KVTYVPR 199 (334)
Q Consensus 143 ~VVt~Gg~-qsNh~~AvAaaaa~~Gl~~~ivv~~~~-p~~~----~gn~~~~~~~G-~V~~v~~ 199 (334)
+|+-+|-. .+|.+.+++.+++++|++.+++.|... |+.. .-.....-+=| +|++..+
T Consensus 158 kv~~vGD~~~~~v~~Sl~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~d~~ea~~~aDvvyt~~ 221 (305)
T PRK00856 158 KVAIVGDIKHSRVARSNIQALTRLGAEVRLIAPPTLLPEGMPEYGVHTDLDEVIEDADVVMMLR 221 (305)
T ss_pred EEEEECCCCCCcHHHHHHHHHHHcCCEEEEECCcccCcccccceEEECCHHHHhCCCCEEEECC
Confidence 55556542 379999999999999999999998754 2210 01112223446 8888865
No 244
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=21.35 E-value=1.1e+02 Score=26.68 Aligned_cols=35 Identities=17% Similarity=0.140 Sum_probs=24.0
Q ss_pred CCEEEEcCCchhHHHHHHHHHHHcCCCCeEEEEEecc
Q 019910 294 AIKFVVDAGTGTTAVGLGLGAICLGCVPLFNTLLVKL 330 (334)
Q Consensus 294 ~D~Vvvp~GtGgt~aGl~~g~k~lg~~~~VigV~~~g 330 (334)
+...|+.+|+|+-..++..+- ..+..+|++|+++-
T Consensus 31 ~~~~vLDiG~G~G~~~~~la~--~~~~~~v~~vD~s~ 65 (187)
T PRK08287 31 RAKHLIDVGAGTGSVSIEAAL--QFPSLQVTAIERNP 65 (187)
T ss_pred CCCEEEEECCcCCHHHHHHHH--HCCCCEEEEEECCH
Confidence 344677888777666655543 35778999999853
No 245
>cd06313 PBP1_ABC_sugar_binding_like_5 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=21.31 E-value=2e+02 Score=26.17 Aligned_cols=34 Identities=6% Similarity=-0.176 Sum_probs=25.9
Q ss_pred CCCEEEEcCCchhHHHHHHHHHHHcCC-CCeEEEEEe
Q 019910 293 RAIKFVVDAGTGTTAVGLGLGAICLGC-VPLFNTLLV 328 (334)
Q Consensus 293 ~~D~Vvvp~GtGgt~aGl~~g~k~lg~-~~~VigV~~ 328 (334)
.+|.||+. +..++.|+..+++..|. ++.|+|++-
T Consensus 183 ~~~ai~~~--nd~~a~g~~~al~~~g~~di~vvgfd~ 217 (272)
T cd06313 183 QLDGAFCH--NDSMALAAYQIMKAAGRTKIVIGGVDG 217 (272)
T ss_pred CCCEEEEC--CCcHHHHHHHHHHHcCCCceEEEeecC
Confidence 57887774 44578899999999887 777777763
No 246
>cd06273 PBP1_GntR_like_1 This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational
Probab=21.25 E-value=2.5e+02 Score=25.07 Aligned_cols=35 Identities=20% Similarity=0.091 Sum_probs=26.4
Q ss_pred CCCCEEEEcCCchhHHHHHHHHHHHcCC----CCeEEEEEe
Q 019910 292 KRAIKFVVDAGTGTTAVGLGLGAICLGC----VPLFNTLLV 328 (334)
Q Consensus 292 ~~~D~Vvvp~GtGgt~aGl~~g~k~lg~----~~~VigV~~ 328 (334)
..+|.||+ +++..+.|+..+++..|. ++.|+|++-
T Consensus 177 ~~~~ai~~--~~~~~a~~~~~~l~~~g~~~p~~i~vig~d~ 215 (268)
T cd06273 177 PRPTAVIC--GNDVLALGALYEARRLGLSVPEDLSIVGFDD 215 (268)
T ss_pred CCCCEEEE--cChHHHHHHHHHHHHcCCCCCCceEEEecCC
Confidence 35888886 567788899999999884 456777663
No 247
>cd01013 isochorismatase Isochorismatase, also known as 2,3 dihydro-2,3 dihydroxybenzoate synthase, catalyses the conversion of isochorismate, in the presence of water, to 2,3-dihydroxybenzoate and pyruvate, via the hydrolysis of a vinyl ether, an uncommon reaction in biological systems. Isochorismatase is part of the phenazine biosynthesis pathway. Phenazines are antimicrobial compounds that provide the competitive advantage for certain bacteria.
Probab=21.20 E-value=2e+02 Score=25.91 Aligned_cols=40 Identities=13% Similarity=0.133 Sum_probs=30.4
Q ss_pred HhcCCCEEEEeCCccchHH-HHHHHHHHHhCCeEEEEeCCCC
Q 019910 137 EDHIVTDLVTCGGCQSAHA-TAVAVSCAERGLKSHLLLRGEQ 177 (334)
Q Consensus 137 ~~~g~~~VVt~Gg~qsNh~-~AvAaaaa~~Gl~~~ivv~~~~ 177 (334)
++.|+++||-+|- .+|.| .++|.-|..+|++++++-+...
T Consensus 138 r~~gi~~lii~Gv-~T~~CV~~Ta~~A~~~Gy~v~vv~Da~a 178 (203)
T cd01013 138 KESGRDQLIITGV-YAHIGCLSTAVDAFMRDIQPFVVADAIA 178 (203)
T ss_pred HHcCCCEEEEEEe-ccChhHHHHHHHHHHCCCeEEEeccccC
Confidence 5789999998875 56665 5677889999999887766533
No 248
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=21.16 E-value=1.1e+02 Score=29.30 Aligned_cols=32 Identities=31% Similarity=0.408 Sum_probs=25.4
Q ss_pred EEEeCCccchHHHHHHHHHHHhCCeEEEEeCCCC
Q 019910 144 LVTCGGCQSAHATAVAVSCAERGLKSHLLLRGEQ 177 (334)
Q Consensus 144 VVt~Gg~qsNh~~AvAaaaa~~Gl~~~ivv~~~~ 177 (334)
|+-.|+ |-.|.++|.+.++.|++++|+=+...
T Consensus 2 ViIvGa--G~aGl~~A~~L~~~G~~v~v~Er~~~ 33 (385)
T TIGR01988 2 IVIVGG--GMVGLALALALARSGLKIALIEATPA 33 (385)
T ss_pred EEEECC--CHHHHHHHHHHhcCCCEEEEEeCCCc
Confidence 333666 77999999999999999988866644
No 249
>cd06344 PBP1_ABC_ligand_binding_like_9 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine/isoleucine/valine binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=21.15 E-value=6.9e+02 Score=23.42 Aligned_cols=35 Identities=14% Similarity=-0.301 Sum_probs=23.5
Q ss_pred CCCEEEEcCCchhHHHHHHHHHHHcCCCCeEEEEEe
Q 019910 293 RAIKFVVDAGTGTTAVGLGLGAICLGCVPLFNTLLV 328 (334)
Q Consensus 293 ~~D~Vvvp~GtGgt~aGl~~g~k~lg~~~~VigV~~ 328 (334)
.+|.||+...++ .+.-+.+.++..+.+..+++...
T Consensus 191 ~~d~v~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~ 225 (332)
T cd06344 191 GATVLVLFPDTD-TLDKALEVAKANKGRLTLLGGDS 225 (332)
T ss_pred CCCEEEEeCChh-HHHHHHHHHHhcCCCceEEeccc
Confidence 478887766543 55666677777777778876543
No 250
>cd06319 PBP1_ABC_sugar_binding_like_10 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=21.12 E-value=6e+02 Score=22.66 Aligned_cols=42 Identities=14% Similarity=0.037 Sum_probs=27.5
Q ss_pred hhHHHHhcCCCEEEEeCCccchHHHHHHHHHHHhCCeEEEEeC
Q 019910 132 LLPLLEDHIVTDLVTCGGCQSAHATAVAVSCAERGLKSHLLLR 174 (334)
Q Consensus 132 lL~~a~~~g~~~VVt~Gg~qsNh~~AvAaaaa~~Gl~~~ivv~ 174 (334)
.+..+...+++.||..+ ..++........+++.|++.+++-.
T Consensus 47 ~i~~~~~~~~dgiii~~-~~~~~~~~~l~~~~~~~ipvV~~~~ 88 (277)
T cd06319 47 NLRTAIDKGVSGIIISP-TNSSAAVTLLKLAAQAKIPVVIADI 88 (277)
T ss_pred HHHHHHhcCCCEEEEcC-CchhhhHHHHHHHHHCCCCEEEEec
Confidence 34455667899998544 3444444455567788999988754
No 251
>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed
Probab=21.08 E-value=1.7e+02 Score=28.81 Aligned_cols=31 Identities=26% Similarity=0.263 Sum_probs=25.4
Q ss_pred EEEEeCCccchHHHHHHHHHHHhCCeEEEEeCC
Q 019910 143 DLVTCGGCQSAHATAVAVSCAERGLKSHLLLRG 175 (334)
Q Consensus 143 ~VVt~Gg~qsNh~~AvAaaaa~~Gl~~~ivv~~ 175 (334)
+|.-.||.| .+..++.+|+++|++++++-+.
T Consensus 4 ~igilG~Gq--l~~ml~~aa~~lG~~v~~~d~~ 34 (372)
T PRK06019 4 TIGIIGGGQ--LGRMLALAAAPLGYKVIVLDPD 34 (372)
T ss_pred EEEEECCCH--HHHHHHHHHHHcCCEEEEEeCC
Confidence 455577745 8999999999999999998765
No 252
>PRK05868 hypothetical protein; Validated
Probab=20.97 E-value=1.4e+02 Score=29.35 Aligned_cols=31 Identities=26% Similarity=0.301 Sum_probs=24.5
Q ss_pred EEEEeCCccchHHHHHHHHHHHhCCeEEEEeCC
Q 019910 143 DLVTCGGCQSAHATAVAVSCAERGLKSHLLLRG 175 (334)
Q Consensus 143 ~VVt~Gg~qsNh~~AvAaaaa~~Gl~~~ivv~~ 175 (334)
.|+-.|| |-.|.++|.+.++.|++++|+=..
T Consensus 3 ~V~IvGg--G~aGl~~A~~L~~~G~~v~viE~~ 33 (372)
T PRK05868 3 TVVVSGA--SVAGTAAAYWLGRHGYSVTMVERH 33 (372)
T ss_pred eEEEECC--CHHHHHHHHHHHhCCCCEEEEcCC
Confidence 3454676 679999999999999998887544
No 253
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=20.97 E-value=2.5e+02 Score=24.48 Aligned_cols=33 Identities=9% Similarity=-0.126 Sum_probs=20.7
Q ss_pred EEEEcCCchhHHHHHHHHHHHcCCCCeEEEEEeccC
Q 019910 296 KFVVDAGTGTTAVGLGLGAICLGCVPLFNTLLVKLS 331 (334)
Q Consensus 296 ~Vvvp~GtGgt~aGl~~g~k~lg~~~~VigV~~~gs 331 (334)
.+-+.+|+|+...-++ +...+..+|+||+++..
T Consensus 36 VLDiG~GtG~~~~~l~---~~~~~~~~v~~vDis~~ 68 (188)
T TIGR00438 36 VLDLGAAPGGWSQVAV---EQVGGKGRVIAVDLQPM 68 (188)
T ss_pred EEEecCCCCHHHHHHH---HHhCCCceEEEEecccc
Confidence 4566666776544333 23456779999998753
No 254
>PRK07538 hypothetical protein; Provisional
Probab=20.92 E-value=1.3e+02 Score=29.81 Aligned_cols=30 Identities=17% Similarity=0.388 Sum_probs=23.9
Q ss_pred EEEeCCccchHHHHHHHHHHHhCCeEEEEeCC
Q 019910 144 LVTCGGCQSAHATAVAVSCAERGLKSHLLLRG 175 (334)
Q Consensus 144 VVt~Gg~qsNh~~AvAaaaa~~Gl~~~ivv~~ 175 (334)
|+-.|| |=.|.++|.+.++.|++++||=+.
T Consensus 3 V~IVGa--G~aGl~~A~~L~~~G~~v~v~E~~ 32 (413)
T PRK07538 3 VLIAGG--GIGGLTLALTLHQRGIEVVVFEAA 32 (413)
T ss_pred EEEECC--CHHHHHHHHHHHhCCCcEEEEEcC
Confidence 444676 568999999999999998888554
No 255
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=20.91 E-value=1.3e+02 Score=27.34 Aligned_cols=31 Identities=26% Similarity=0.377 Sum_probs=23.6
Q ss_pred EEeCCccchHHHHHHHHHHHhCCeEEEEeCCCC
Q 019910 145 VTCGGCQSAHATAVAVSCAERGLKSHLLLRGEQ 177 (334)
Q Consensus 145 Vt~Gg~qsNh~~AvAaaaa~~Gl~~~ivv~~~~ 177 (334)
+-.|+ |=.|.++|...++.|++++++=+...
T Consensus 4 ~IiGa--G~aGl~~A~~l~~~g~~v~vie~~~~ 34 (295)
T TIGR02032 4 VVVGA--GPAGASAAYRLADKGLRVLLLEKKSF 34 (295)
T ss_pred EEECC--CHHHHHHHHHHHHCCCeEEEEeccCC
Confidence 33565 55889999999999999888865543
No 256
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=20.86 E-value=1.1e+02 Score=32.54 Aligned_cols=31 Identities=23% Similarity=0.275 Sum_probs=24.7
Q ss_pred EEEEeCCccchHHHHHHHHHHHhCCeEEEEeCC
Q 019910 143 DLVTCGGCQSAHATAVAVSCAERGLKSHLLLRG 175 (334)
Q Consensus 143 ~VVt~Gg~qsNh~~AvAaaaa~~Gl~~~ivv~~ 175 (334)
+|+.+|| |..|.+.|..|++.|++++++-..
T Consensus 31 DVlVIG~--G~AGl~AAi~Aa~~G~~V~lveK~ 61 (617)
T PTZ00139 31 DAVVVGA--GGAGLRAALGLVELGYKTACISKL 61 (617)
T ss_pred CEEEECc--cHHHHHHHHHHHHcCCcEEEEecc
Confidence 4555787 889999999999999988777654
No 257
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=20.85 E-value=1.2e+02 Score=29.81 Aligned_cols=30 Identities=23% Similarity=0.327 Sum_probs=23.8
Q ss_pred EEEEeCCccchHHHHHHHHHHHhCCeEEEEeC
Q 019910 143 DLVTCGGCQSAHATAVAVSCAERGLKSHLLLR 174 (334)
Q Consensus 143 ~VVt~Gg~qsNh~~AvAaaaa~~Gl~~~ivv~ 174 (334)
+|+-.|+ |-.|.++|.+.++.|++++++=+
T Consensus 6 dV~IvGa--G~~Gl~~A~~L~~~G~~v~viE~ 35 (405)
T PRK08850 6 DVAIIGG--GMVGLALAAALKESDLRIAVIEG 35 (405)
T ss_pred CEEEECc--cHHHHHHHHHHHhCCCEEEEEcC
Confidence 3444676 77999999999999999877743
No 258
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=20.75 E-value=1.2e+02 Score=29.51 Aligned_cols=31 Identities=23% Similarity=0.357 Sum_probs=24.2
Q ss_pred CEEEEeCCccchHHHHHHHHHHHhCCeEEEEeCC
Q 019910 142 TDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRG 175 (334)
Q Consensus 142 ~~VVt~Gg~qsNh~~AvAaaaa~~Gl~~~ivv~~ 175 (334)
+.+| .|| |=.|.++|.+.++.|++++++=+.
T Consensus 7 dViI-vGg--G~aGl~~A~~La~~G~~V~liE~~ 37 (391)
T PRK08020 7 DIAI-VGG--GMVGAALALGLAQHGFSVAVLEHA 37 (391)
T ss_pred cEEE-ECc--CHHHHHHHHHHhcCCCEEEEEcCC
Confidence 4444 676 679999999999999998887544
No 259
>PRK12562 ornithine carbamoyltransferase subunit F; Provisional
Probab=20.66 E-value=3.4e+02 Score=26.89 Aligned_cols=36 Identities=19% Similarity=0.232 Sum_probs=28.7
Q ss_pred CEEEEeCCccchHHHHHHHHHHHhCCeEEEEeCCCC
Q 019910 142 TDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGEQ 177 (334)
Q Consensus 142 ~~VVt~Gg~qsNh~~AvAaaaa~~Gl~~~ivv~~~~ 177 (334)
.+|.-+|-.-.|-+.+++.+|+++|++++++.|...
T Consensus 157 l~va~vGD~~~~v~~S~~~~~~~~G~~v~~~~P~~~ 192 (334)
T PRK12562 157 MTLVYAGDARNNMGNSMLEAAALTGLDLRLVAPQAC 192 (334)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCEEEEECCccc
Confidence 355557764458899999999999999999998753
No 260
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=20.64 E-value=1.2e+02 Score=31.89 Aligned_cols=29 Identities=24% Similarity=0.381 Sum_probs=23.2
Q ss_pred EEEEeCCccchHHHHHHHHHHHhCCeEEEEe
Q 019910 143 DLVTCGGCQSAHATAVAVSCAERGLKSHLLL 173 (334)
Q Consensus 143 ~VVt~Gg~qsNh~~AvAaaaa~~Gl~~~ivv 173 (334)
+||.+|+ |..+.+.|+.+++.|.+++++=
T Consensus 11 DVvVVG~--G~aGl~AA~~aa~~G~~v~llE 39 (574)
T PRK12842 11 DVLVIGS--GAGGLSAAITARKLGLDVVVLE 39 (574)
T ss_pred CEEEECc--CHHHHHHHHHHHHcCCeEEEEe
Confidence 3555786 7899999999999999877653
No 261
>cd06292 PBP1_LacI_like_10 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=20.60 E-value=2.9e+02 Score=24.77 Aligned_cols=32 Identities=16% Similarity=-0.067 Sum_probs=25.6
Q ss_pred CCEEEEcCCchhHHHHHHHHHHHcCC----CCeEEEEE
Q 019910 294 AIKFVVDAGTGTTAVGLGLGAICLGC----VPLFNTLL 327 (334)
Q Consensus 294 ~D~Vvvp~GtGgt~aGl~~g~k~lg~----~~~VigV~ 327 (334)
||.||++ +...+.|+..+++..|. ++.|+|++
T Consensus 182 ~~ai~~~--~d~~a~g~~~~l~~~g~~ip~di~ii~~d 217 (273)
T cd06292 182 PTAIVAA--SDLMALGAIRAARRRGLRVPEDVSVVGYD 217 (273)
T ss_pred CCEEEEc--CcHHHHHHHHHHHHcCCCCCcceEEEeeC
Confidence 7888865 56778899999999985 56788876
No 262
>cd06295 PBP1_CelR Ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. This group includes the ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. The binding of CelR to the celE promoter is inhibited specifically by cellobiose. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn chang
Probab=20.49 E-value=2.8e+02 Score=24.95 Aligned_cols=36 Identities=8% Similarity=-0.216 Sum_probs=27.3
Q ss_pred CCCCEEEEcCCchhHHHHHHHHHHHcCC----CCeEEEEEec
Q 019910 292 KRAIKFVVDAGTGTTAVGLGLGAICLGC----VPLFNTLLVK 329 (334)
Q Consensus 292 ~~~D~Vvvp~GtGgt~aGl~~g~k~lg~----~~~VigV~~~ 329 (334)
+.+|.||+. ++..+.|+..+++..|. ++.|+|++-.
T Consensus 185 ~~~~ai~~~--~~~~a~g~~~~l~~~g~~ip~~i~ii~~d~~ 224 (275)
T cd06295 185 PDFDAVFAA--SDLMALGALRALREAGRRVPEDVAVVGFDDI 224 (275)
T ss_pred CCCCEEEEC--CcHHHHHHHHHHHHhCCCCccceEEEeeCCc
Confidence 357888876 45678899999999886 4678888743
No 263
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=20.47 E-value=1.2e+02 Score=29.43 Aligned_cols=30 Identities=30% Similarity=0.454 Sum_probs=23.4
Q ss_pred EEEeCCccchHHHHHHHHHHHhCCeEEEEeCC
Q 019910 144 LVTCGGCQSAHATAVAVSCAERGLKSHLLLRG 175 (334)
Q Consensus 144 VVt~Gg~qsNh~~AvAaaaa~~Gl~~~ivv~~ 175 (334)
||-.|+ |=.|.++|+.+++.|+++.++=+.
T Consensus 2 viIiGa--G~AGl~~A~~la~~g~~v~liE~~ 31 (388)
T TIGR01790 2 LAVIGG--GPAGLAIALELARPGLRVQLIEPH 31 (388)
T ss_pred EEEECC--CHHHHHHHHHHHhCCCeEEEEccC
Confidence 344665 678999999999999998887654
No 264
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=20.44 E-value=1.6e+02 Score=27.34 Aligned_cols=30 Identities=33% Similarity=0.415 Sum_probs=25.2
Q ss_pred EEEeCCccchHHHHHHHHHHHhCCeEEEEeCC
Q 019910 144 LVTCGGCQSAHATAVAVSCAERGLKSHLLLRG 175 (334)
Q Consensus 144 VVt~Gg~qsNh~~AvAaaaa~~Gl~~~ivv~~ 175 (334)
||-.|+ |=.|.++|+..++.|.+++++=+.
T Consensus 2 vvIIGa--Gi~G~~~A~~La~~G~~V~l~e~~ 31 (358)
T PF01266_consen 2 VVIIGA--GIAGLSTAYELARRGHSVTLLERG 31 (358)
T ss_dssp EEEECT--SHHHHHHHHHHHHTTSEEEEEESS
T ss_pred EEEECc--CHHHHHHHHHHHHCCCeEEEEeec
Confidence 444676 669999999999999999999777
No 265
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=20.40 E-value=1e+03 Score=25.20 Aligned_cols=49 Identities=14% Similarity=0.186 Sum_probs=32.0
Q ss_pred CEEEEeCCccchHHHHHHHHHHHhCCeEEEEeCCCCCccccchhHHHHHCC-eEEEEC
Q 019910 142 TDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGEQPQILTGYNLISTIYG-KVTYVP 198 (334)
Q Consensus 142 ~~VVt~Gg~qsNh~~AvAaaaa~~Gl~~~ivv~~~~p~~~~gn~~~~~~~G-~V~~v~ 198 (334)
.+||-||. |.-|+.+|-.-.+.|++++++ +.+ |+ .....+.+| .+++=+
T Consensus 401 ~~vII~G~--Gr~G~~va~~L~~~g~~vvvI-D~d-~~----~v~~~~~~g~~v~~GD 450 (601)
T PRK03659 401 PQVIIVGF--GRFGQVIGRLLMANKMRITVL-ERD-IS----AVNLMRKYGYKVYYGD 450 (601)
T ss_pred CCEEEecC--chHHHHHHHHHHhCCCCEEEE-ECC-HH----HHHHHHhCCCeEEEee
Confidence 56777885 889999999888999987665 332 21 223345567 555543
No 266
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=20.37 E-value=2.7e+02 Score=24.21 Aligned_cols=41 Identities=27% Similarity=0.279 Sum_probs=20.4
Q ss_pred HHHHHHHhhhcCCCCCCEEEE-c-CCchhHHHHHHHHHHHcCCCCeEEEEEec
Q 019910 279 LLQYLSQDHLLGRKRAIKFVV-D-AGTGTTAVGLGLGAICLGCVPLFNTLLVK 329 (334)
Q Consensus 279 la~EI~eq~~~g~~~~D~Vvv-p-~GtGgt~aGl~~g~k~lg~~~~VigV~~~ 329 (334)
|...+.+.. ..+..||+ | +|||||+. ++.. ...+.||+++.
T Consensus 180 l~~~lI~~~----t~~gdiVlDpF~GSGTT~~----aa~~--l~R~~ig~E~~ 222 (231)
T PF01555_consen 180 LIERLIKAS----TNPGDIVLDPFAGSGTTAV----AAEE--LGRRYIGIEID 222 (231)
T ss_dssp HHHHHHHHH----S-TT-EEEETT-TTTHHHH----HHHH--TT-EEEEEESS
T ss_pred HHHHHHHhh----hccceeeehhhhccChHHH----HHHH--cCCeEEEEeCC
Confidence 455555443 12344444 4 67888753 3334 44568888874
No 267
>PRK13978 ribose-5-phosphate isomerase A; Provisional
Probab=20.32 E-value=1.8e+02 Score=27.37 Aligned_cols=33 Identities=18% Similarity=-0.035 Sum_probs=18.4
Q ss_pred EEEEcCCchhHHHHHHHHHHHcCC--CCeEEEEEe
Q 019910 296 KFVVDAGTGTTAVGLGLGAICLGC--VPLFNTLLV 328 (334)
Q Consensus 296 ~Vvvp~GtGgt~aGl~~g~k~lg~--~~~VigV~~ 328 (334)
.-+|..|||+|+.-+...+..... ...|.+|..
T Consensus 22 gmvvGLGTGSTv~~~i~~L~~~~~~~~l~i~~Vpt 56 (228)
T PRK13978 22 DMTLGIGTGSTMELLLPQMAQLIKERGYNITGVCT 56 (228)
T ss_pred CCEEEeCchHHHHHHHHHHHHHhhccCccEEEEeC
Confidence 446777777777766555443321 134556543
No 268
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=20.31 E-value=1.2e+02 Score=32.45 Aligned_cols=31 Identities=26% Similarity=0.488 Sum_probs=25.2
Q ss_pred EEEEeCCccchHHHHHHHHHHHhCCeEEEEeCC
Q 019910 143 DLVTCGGCQSAHATAVAVSCAERGLKSHLLLRG 175 (334)
Q Consensus 143 ~VVt~Gg~qsNh~~AvAaaaa~~Gl~~~ivv~~ 175 (334)
+||.+|+ |..|.+.|..|++.|.+++++-..
T Consensus 10 DVvVIG~--G~AGl~AAl~Aae~G~~V~lieK~ 40 (626)
T PRK07803 10 DVVVIGA--GGAGLRAAIEARERGLRVAVVCKS 40 (626)
T ss_pred cEEEECc--CHHHHHHHHHHHHCCCCEEEEecc
Confidence 3444786 889999999999999998887654
No 269
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=20.29 E-value=1.2e+02 Score=32.69 Aligned_cols=31 Identities=29% Similarity=0.391 Sum_probs=24.8
Q ss_pred EEEEeCCccchHHHHHHHHHHHhCCeEEEEeCC
Q 019910 143 DLVTCGGCQSAHATAVAVSCAERGLKSHLLLRG 175 (334)
Q Consensus 143 ~VVt~Gg~qsNh~~AvAaaaa~~Gl~~~ivv~~ 175 (334)
+||.+|| |..|...|..|++.|++++++-..
T Consensus 7 DVlVIG~--G~AGl~AAi~Aae~G~~VivleK~ 37 (657)
T PRK08626 7 DALVIGA--GLAGLRVAIAAAQRGLDTIVLSLV 37 (657)
T ss_pred cEEEECc--cHHHHHHHHHHHHcCCCEEEEeCC
Confidence 3555786 789999999999999998888543
No 270
>PRK08013 oxidoreductase; Provisional
Probab=20.28 E-value=1.2e+02 Score=29.79 Aligned_cols=32 Identities=28% Similarity=0.356 Sum_probs=25.0
Q ss_pred EEEeCCccchHHHHHHHHHHHhCCeEEEEeCCCC
Q 019910 144 LVTCGGCQSAHATAVAVSCAERGLKSHLLLRGEQ 177 (334)
Q Consensus 144 VVt~Gg~qsNh~~AvAaaaa~~Gl~~~ivv~~~~ 177 (334)
|+..|+ |=.|.++|.+.++.|++++++=+...
T Consensus 6 V~IvGa--GpaGl~~A~~La~~G~~v~viE~~~~ 37 (400)
T PRK08013 6 VVIAGG--GMVGLAVACGLQGSGLRVAVLEQRVP 37 (400)
T ss_pred EEEECc--CHHHHHHHHHHhhCCCEEEEEeCCCC
Confidence 444666 67999999999999999988865543
No 271
>PRK05866 short chain dehydrogenase; Provisional
Probab=20.25 E-value=7.2e+02 Score=23.24 Aligned_cols=32 Identities=28% Similarity=0.262 Sum_probs=24.3
Q ss_pred CEEEEeCCccchHHHHHHHHHHHhCCeEEEEeCC
Q 019910 142 TDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRG 175 (334)
Q Consensus 142 ~~VVt~Gg~qsNh~~AvAaaaa~~Gl~~~ivv~~ 175 (334)
+-+| +|+ .|--|.++|...++.|.+.+++.+.
T Consensus 42 ~vlI-tGa-sggIG~~la~~La~~G~~Vi~~~R~ 73 (293)
T PRK05866 42 RILL-TGA-SSGIGEAAAEQFARRGATVVAVARR 73 (293)
T ss_pred EEEE-eCC-CcHHHHHHHHHHHHCCCEEEEEECC
Confidence 3444 555 5789999999999999988777654
No 272
>PRK06139 short chain dehydrogenase; Provisional
Probab=20.25 E-value=7.8e+02 Score=23.71 Aligned_cols=32 Identities=31% Similarity=0.320 Sum_probs=24.4
Q ss_pred EEEEeCCccchHHHHHHHHHHHhCCeEEEEeCC
Q 019910 143 DLVTCGGCQSAHATAVAVSCAERGLKSHLLLRG 175 (334)
Q Consensus 143 ~VVt~Gg~qsNh~~AvAaaaa~~Gl~~~ivv~~ 175 (334)
+++.+|+ +|--|.++|...++.|.+.+++-+.
T Consensus 9 ~vlITGA-s~GIG~aia~~la~~G~~Vvl~~R~ 40 (330)
T PRK06139 9 VVVITGA-SSGIGQATAEAFARRGARLVLAARD 40 (330)
T ss_pred EEEEcCC-CCHHHHHHHHHHHHCCCEEEEEECC
Confidence 4443555 5788999999999999997777654
No 273
>PRK06185 hypothetical protein; Provisional
Probab=20.22 E-value=1.3e+02 Score=29.47 Aligned_cols=33 Identities=15% Similarity=0.251 Sum_probs=25.5
Q ss_pred CCCEEEEeCCccchHHHHHHHHHHHhCCeEEEEeCC
Q 019910 140 IVTDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRG 175 (334)
Q Consensus 140 g~~~VVt~Gg~qsNh~~AvAaaaa~~Gl~~~ivv~~ 175 (334)
..+.+| .|| |=.|.++|.+.++.|++++++=+.
T Consensus 6 ~~dV~I-vGg--G~~Gl~~A~~La~~G~~v~liE~~ 38 (407)
T PRK06185 6 TTDCCI-VGG--GPAGMMLGLLLARAGVDVTVLEKH 38 (407)
T ss_pred cccEEE-ECC--CHHHHHHHHHHHhCCCcEEEEecC
Confidence 345455 676 668999999999999998887654
No 274
>PRK10423 transcriptional repressor RbsR; Provisional
Probab=20.20 E-value=2.7e+02 Score=25.91 Aligned_cols=35 Identities=14% Similarity=-0.066 Sum_probs=26.7
Q ss_pred CCCCEEEEcCCchhHHHHHHHHHHHcCC----CCeEEEEEe
Q 019910 292 KRAIKFVVDAGTGTTAVGLGLGAICLGC----VPLFNTLLV 328 (334)
Q Consensus 292 ~~~D~Vvvp~GtGgt~aGl~~g~k~lg~----~~~VigV~~ 328 (334)
..||.||++ +...+.|+..+++.+|. ++.|+|++-
T Consensus 234 ~~~~ai~~~--~d~~A~g~~~~l~~~g~~vP~dvsvigfd~ 272 (327)
T PRK10423 234 LRPQAVFTG--NDAMAVGVYQALYQAGLSVPQDIAVIGYDD 272 (327)
T ss_pred CCCCEEEEc--CcHHHHHHHHHHHHcCCCCCCceEEEEeCC
Confidence 358888874 45677899999999985 567888753
No 275
>COG0076 GadB Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism]
Probab=20.08 E-value=2.6e+02 Score=28.91 Aligned_cols=57 Identities=16% Similarity=0.164 Sum_probs=34.1
Q ss_pred cCCCEEEEeCCccchHHHHHHHHHHHh---C---C----eEEEEeCCCCCccccchhHHHHHCC-eEEEEC
Q 019910 139 HIVTDLVTCGGCQSAHATAVAVSCAER---G---L----KSHLLLRGEQPQILTGYNLISTIYG-KVTYVP 198 (334)
Q Consensus 139 ~g~~~VVt~Gg~qsNh~~AvAaaaa~~---G---l----~~~ivv~~~~p~~~~gn~~~~~~~G-~V~~v~ 198 (334)
....+.+|.||+++|....+|+-.+-. + . ...|+++...- ..-...++++| ++..|+
T Consensus 118 ~~~~G~~t~GgTean~lal~aar~~~~~~~~~~~~~~~~~P~ii~s~~aH---~s~~Kaa~~lG~~~~~v~ 185 (460)
T COG0076 118 EEASGTFTSGGTEANLLALLAARERWRKRALAESGKPGGKPNIVCSETAH---FSFEKAARYLGLGLRRVP 185 (460)
T ss_pred CCCceEEEcChHHHHHHHHHHHHHHHHHHhhhcccccCCCCeEEecCcch---hHHHHHHHHhCCCceeEE
Confidence 456788999999999966555543332 1 1 22677777542 22234567777 554443
No 276
>PRK08163 salicylate hydroxylase; Provisional
Probab=20.08 E-value=1.5e+02 Score=28.90 Aligned_cols=32 Identities=28% Similarity=0.448 Sum_probs=25.5
Q ss_pred EEEEeCCccchHHHHHHHHHHHhCCeEEEEeCCC
Q 019910 143 DLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGE 176 (334)
Q Consensus 143 ~VVt~Gg~qsNh~~AvAaaaa~~Gl~~~ivv~~~ 176 (334)
.|+-.|| |=.|.++|.+.++.|++++|+=+..
T Consensus 6 ~V~IvGa--GiaGl~~A~~L~~~g~~v~v~Er~~ 37 (396)
T PRK08163 6 PVLIVGG--GIGGLAAALALARQGIKVKLLEQAA 37 (396)
T ss_pred eEEEECC--cHHHHHHHHHHHhCCCcEEEEeeCc
Confidence 3554676 5689999999999999999886653
No 277
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=20.05 E-value=2.3e+02 Score=26.60 Aligned_cols=33 Identities=24% Similarity=0.285 Sum_probs=24.9
Q ss_pred CCEEEEeCCccchHHHHHHHHHHHhCCeEEEEeCCC
Q 019910 141 VTDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGE 176 (334)
Q Consensus 141 ~~~VVt~Gg~qsNh~~AvAaaaa~~Gl~~~ivv~~~ 176 (334)
.+.+| .|+ |=.+.+.|+++++.|+++.++=+..
T Consensus 22 ~DVvI-VGg--GpAGL~aA~~la~~G~~V~vlEk~~ 54 (254)
T TIGR00292 22 SDVII-VGA--GPSGLTAAYYLAKNGLKVCVLERSL 54 (254)
T ss_pred CCEEE-ECC--CHHHHHHHHHHHHCCCcEEEEecCC
Confidence 45444 676 5588999999999999988885543
Done!