Query 019910
Match_columns 334
No_of_seqs 250 out of 1506
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 08:55:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019910.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019910hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4d9b_A D-cysteine desulfhydras 100.0 2.1E-39 7.1E-44 313.7 16.8 208 86-333 26-239 (342)
2 1j0a_A 1-aminocyclopropane-1-c 100.0 1.9E-38 6.4E-43 304.4 20.8 206 86-334 15-222 (325)
3 1f2d_A 1-aminocyclopropane-1-c 100.0 4.7E-39 1.6E-43 310.5 14.9 206 86-332 9-231 (341)
4 1tzj_A ACC deaminase, 1-aminoc 100.0 1.1E-36 3.9E-41 292.7 16.2 208 86-332 9-228 (338)
5 3aey_A Threonine synthase; PLP 100.0 3.1E-35 1.1E-39 285.0 19.7 210 63-332 4-223 (351)
6 4h27_A L-serine dehydratase/L- 100.0 8.8E-35 3E-39 284.0 18.6 210 59-332 24-235 (364)
7 2d1f_A Threonine synthase; ami 100.0 8.8E-35 3E-39 283.1 18.2 211 63-332 14-232 (360)
8 2zsj_A Threonine synthase; PLP 100.0 8.6E-35 2.9E-39 282.0 17.0 210 63-332 6-225 (352)
9 1p5j_A L-serine dehydratase; l 100.0 1.4E-34 4.7E-39 283.5 17.8 205 64-332 29-235 (372)
10 2egu_A Cysteine synthase; O-ac 100.0 6.3E-34 2.2E-38 270.8 19.1 193 87-332 9-208 (308)
11 2q3b_A Cysteine synthase A; py 100.0 2.3E-33 8E-38 267.5 22.4 196 86-333 10-212 (313)
12 2pqm_A Cysteine synthase; OASS 100.0 2.3E-33 7.7E-38 271.7 21.8 197 85-333 16-223 (343)
13 4aec_A Cysteine synthase, mito 100.0 1.8E-33 6.3E-38 280.6 21.7 197 84-332 115-319 (430)
14 1ve1_A O-acetylserine sulfhydr 100.0 1.9E-33 6.5E-38 267.1 20.1 192 89-333 6-206 (304)
15 3l6b_A Serine racemase; pyrido 100.0 5.3E-34 1.8E-38 276.6 16.6 187 91-332 24-215 (346)
16 3dwg_A Cysteine synthase B; su 100.0 2.4E-33 8.3E-38 269.6 19.9 190 90-332 13-216 (325)
17 3tbh_A O-acetyl serine sulfhyd 100.0 5.7E-33 2E-37 268.1 22.6 195 86-333 15-217 (334)
18 2rkb_A Serine dehydratase-like 100.0 1E-33 3.6E-38 270.4 17.2 188 91-332 6-195 (318)
19 2v03_A Cysteine synthase B; py 100.0 8.2E-33 2.8E-37 263.0 22.9 194 87-333 5-205 (303)
20 1y7l_A O-acetylserine sulfhydr 100.0 4.7E-33 1.6E-37 265.7 20.6 193 86-332 7-208 (316)
21 1z7w_A Cysteine synthase; tran 100.0 7.8E-33 2.7E-37 265.0 21.7 195 86-332 9-211 (322)
22 2gn0_A Threonine dehydratase c 100.0 3.9E-33 1.3E-37 269.8 15.3 187 91-332 39-227 (342)
23 1x1q_A Tryptophan synthase bet 100.0 2.7E-33 9.3E-38 278.0 12.1 249 26-331 24-284 (418)
24 1ve5_A Threonine deaminase; ri 100.0 1.5E-32 5.1E-37 261.4 15.8 189 91-332 19-208 (311)
25 1qop_B Tryptophan synthase bet 100.0 3.6E-33 1.2E-37 274.8 11.4 246 27-331 3-259 (396)
26 3ss7_X D-serine dehydratase; t 100.0 1.1E-32 3.7E-37 275.8 15.0 243 36-332 25-310 (442)
27 1v71_A Serine racemase, hypoth 100.0 7.8E-33 2.7E-37 265.1 12.7 187 91-332 25-213 (323)
28 3vc3_A Beta-cyanoalnine syntha 100.0 1.5E-31 5E-36 259.5 21.3 193 89-332 32-231 (344)
29 1o58_A O-acetylserine sulfhydr 100.0 7.7E-32 2.6E-36 256.3 17.0 190 87-333 15-210 (303)
30 1v8z_A Tryptophan synthase bet 100.0 1.8E-32 6.3E-37 268.2 11.1 241 31-331 2-255 (388)
31 4d9i_A Diaminopropionate ammon 100.0 2.2E-31 7.4E-36 262.5 18.5 191 93-332 45-264 (398)
32 3pc3_A CG1753, isoform A; CBS, 100.0 4.5E-31 1.5E-35 268.5 19.5 196 89-333 57-261 (527)
33 2o2e_A Tryptophan synthase bet 100.0 1.7E-31 6E-36 265.6 13.2 247 26-331 25-286 (422)
34 1jbq_A B, cystathionine beta-s 100.0 1.3E-30 4.3E-35 260.6 18.6 197 87-332 103-308 (435)
35 1wkv_A Cysteine synthase; homo 100.0 9.9E-31 3.4E-35 258.0 16.2 233 29-332 44-291 (389)
36 1e5x_A Threonine synthase; thr 100.0 4.9E-30 1.7E-34 259.5 20.6 240 34-332 66-331 (486)
37 3iau_A Threonine deaminase; py 100.0 1.1E-30 3.6E-35 255.0 14.2 187 91-332 59-247 (366)
38 1tdj_A Biosynthetic threonine 100.0 1.1E-30 3.6E-35 265.7 13.1 186 92-332 31-218 (514)
39 1vb3_A Threonine synthase; PLP 99.9 1.5E-23 5.1E-28 208.8 13.2 185 93-330 84-276 (428)
40 1kl7_A Threonine synthase; thr 99.8 6.3E-20 2.2E-24 186.7 12.9 209 65-331 66-306 (514)
41 4f4f_A Threonine synthase; str 99.8 3.3E-19 1.1E-23 179.6 14.7 180 89-326 90-284 (468)
42 3v7n_A Threonine synthase; ssg 99.8 1E-17 3.6E-22 169.2 17.4 191 90-330 100-302 (487)
43 3l49_A ABC sugar (ribose) tran 85.9 17 0.00058 31.7 17.1 35 293-329 191-226 (291)
44 3g1w_A Sugar ABC transporter; 80.9 29 0.00098 30.6 14.8 35 292-328 186-222 (305)
45 3ipc_A ABC transporter, substr 80.3 25 0.00087 31.6 12.8 35 293-328 193-227 (356)
46 3gbv_A Putative LACI-family tr 77.7 35 0.0012 29.7 15.9 43 279-328 190-233 (304)
47 3rot_A ABC sugar transporter, 75.4 42 0.0014 29.5 15.6 44 279-328 178-226 (297)
48 8abp_A L-arabinose-binding pro 72.8 48 0.0017 29.0 16.7 37 292-328 194-233 (306)
49 3hut_A Putative branched-chain 72.3 54 0.0019 29.4 12.9 35 293-328 194-228 (358)
50 1tjy_A Sugar transport protein 71.9 50 0.0017 29.6 12.3 34 293-328 189-223 (316)
51 3h5t_A Transcriptional regulat 66.5 77 0.0026 28.8 15.7 44 279-328 258-305 (366)
52 3td9_A Branched chain amino ac 65.5 77 0.0026 28.5 15.6 35 293-328 204-238 (366)
53 3o74_A Fructose transport syst 65.4 64 0.0022 27.5 15.2 44 279-328 169-216 (272)
54 3ksm_A ABC-type sugar transpor 63.2 71 0.0024 27.2 15.3 35 292-328 186-222 (276)
55 3fwz_A Inner membrane protein 62.6 55 0.0019 25.8 11.5 32 142-175 8-39 (140)
56 3d02_A Putative LACI-type tran 60.8 84 0.0029 27.3 15.7 34 293-328 189-224 (303)
57 3l9w_A Glutathione-regulated p 60.7 70 0.0024 30.8 11.5 31 142-174 5-35 (413)
58 3sg0_A Extracellular ligand-bi 60.4 96 0.0033 27.8 14.1 35 293-328 214-248 (386)
59 3jy6_A Transcriptional regulat 58.8 88 0.003 26.9 13.7 35 292-328 180-218 (276)
60 3lkb_A Probable branched-chain 57.6 1.1E+02 0.0038 27.8 13.0 36 293-329 198-233 (392)
61 3snr_A Extracellular ligand-bi 56.4 1.1E+02 0.0037 27.2 13.2 34 293-327 190-223 (362)
62 4gnr_A ABC transporter substra 56.3 1.1E+02 0.0038 27.3 11.5 35 293-328 196-230 (353)
63 3m9w_A D-xylose-binding peripl 56.1 1.1E+02 0.0036 27.0 15.1 44 279-327 177-222 (313)
64 3qk7_A Transcriptional regulat 55.3 1.1E+02 0.0036 26.8 16.1 35 292-328 186-224 (294)
65 2h3h_A Sugar ABC transporter, 54.8 1.1E+02 0.0038 26.9 17.2 35 292-328 181-217 (313)
66 2rjo_A Twin-arginine transloca 54.2 1.2E+02 0.0041 27.0 14.2 33 293-327 197-231 (332)
67 2bm8_A Cephalosporin hydroxyla 53.9 15 0.0005 32.4 4.9 36 296-331 85-120 (236)
68 3h5o_A Transcriptional regulat 53.4 1.2E+02 0.0043 27.0 15.9 34 292-327 238-275 (339)
69 3v8e_A Nicotinamidase; hydrola 50.8 31 0.0011 30.2 6.5 40 136-175 149-188 (216)
70 3gbc_A Pyrazinamidase/nicotina 50.6 30 0.001 29.5 6.2 40 136-176 120-160 (186)
71 2gk4_A Conserved hypothetical 47.9 23 0.00078 31.9 5.2 37 140-176 3-53 (232)
72 4ggo_A Trans-2-enoyl-COA reduc 47.9 1.9E+02 0.0066 28.1 12.1 42 256-304 110-151 (401)
73 3k4h_A Putative transcriptiona 47.3 1.4E+02 0.0047 25.7 17.6 34 292-327 191-228 (292)
74 3kkj_A Amine oxidase, flavin-c 46.8 19 0.00065 29.3 4.2 29 142-173 4-32 (336)
75 1jx6_A LUXP protein; protein-l 46.6 1.6E+02 0.0054 26.2 15.5 34 292-327 233-267 (342)
76 3k9c_A Transcriptional regulat 46.5 1.5E+02 0.005 25.8 16.2 35 292-328 184-222 (289)
77 2wt9_A Nicotinamidase; hydrola 45.7 35 0.0012 30.2 6.0 38 137-175 163-201 (235)
78 3eef_A N-carbamoylsarcosine am 45.2 48 0.0017 27.8 6.7 59 137-197 106-168 (182)
79 1p9o_A Phosphopantothenoylcyst 44.5 52 0.0018 30.9 7.3 40 137-176 33-89 (313)
80 2dri_A D-ribose-binding protei 44.3 1.5E+02 0.0052 25.3 15.9 35 292-328 181-216 (271)
81 1vp8_A Hypothetical protein AF 43.4 65 0.0022 28.5 7.2 56 260-327 18-73 (201)
82 2fvy_A D-galactose-binding per 42.6 1.7E+02 0.0057 25.3 16.1 34 293-328 203-237 (309)
83 3kjx_A Transcriptional regulat 42.2 1.9E+02 0.0064 25.8 15.8 43 279-327 237-283 (344)
84 1pvv_A Otcase, ornithine carba 41.6 58 0.002 30.6 7.1 35 142-177 156-190 (315)
85 3gd5_A Otcase, ornithine carba 41.5 57 0.002 30.8 7.1 35 142-177 158-192 (323)
86 3e3m_A Transcriptional regulat 40.2 2.1E+02 0.0071 25.7 16.3 34 292-327 249-286 (355)
87 3eaf_A ABC transporter, substr 39.8 2.2E+02 0.0074 25.9 16.3 39 293-332 199-237 (391)
88 3o94_A Nicotinamidase; hydrola 39.3 55 0.0019 28.6 6.2 39 137-176 139-178 (211)
89 4gek_A TRNA (CMO5U34)-methyltr 39.2 34 0.0012 30.6 5.0 32 297-330 75-106 (261)
90 3r2j_A Alpha/beta-hydrolase-li 39.1 66 0.0023 28.4 6.8 39 137-176 153-192 (227)
91 1ej0_A FTSJ; methyltransferase 38.5 64 0.0022 25.2 6.1 31 297-330 27-57 (180)
92 4ep1_A Otcase, ornithine carba 38.5 68 0.0023 30.5 7.1 35 142-177 180-214 (340)
93 4a8t_A Putrescine carbamoyltra 37.8 78 0.0027 30.1 7.4 35 142-177 176-210 (339)
94 2ef0_A Ornithine carbamoyltran 37.7 73 0.0025 29.7 7.1 35 142-177 155-189 (301)
95 3g85_A Transcriptional regulat 36.4 99 0.0034 26.7 7.5 34 292-327 187-224 (289)
96 3gyb_A Transcriptional regulat 36.3 2E+02 0.0069 24.5 14.6 34 292-327 175-212 (280)
97 3pi7_A NADH oxidoreductase; gr 36.1 1.1E+02 0.0039 27.8 8.2 60 132-198 156-216 (349)
98 2i6u_A Otcase, ornithine carba 36.0 81 0.0028 29.4 7.1 36 142-177 149-184 (307)
99 1im5_A 180AA long hypothetical 35.7 89 0.003 26.0 6.8 65 107-175 89-154 (180)
100 1j2r_A Hypothetical isochorism 35.4 54 0.0018 27.8 5.4 38 137-175 128-166 (199)
101 4ekn_B Aspartate carbamoyltran 35.4 1.3E+02 0.0045 28.0 8.5 36 142-177 152-189 (306)
102 2fep_A Catabolite control prot 35.3 89 0.003 27.2 7.1 35 292-328 194-232 (289)
103 2h0a_A TTHA0807, transcription 34.9 55 0.0019 28.1 5.5 34 292-327 179-216 (276)
104 2x7x_A Sensor protein; transfe 34.8 2.4E+02 0.0082 24.9 17.3 36 292-329 187-224 (325)
105 4a8p_A Putrescine carbamoyltra 34.7 92 0.0031 29.8 7.4 35 142-177 154-188 (355)
106 3oz2_A Digeranylgeranylglycero 34.6 39 0.0013 30.5 4.6 30 142-174 6-35 (397)
107 1jye_A Lactose operon represso 33.9 2.6E+02 0.0089 25.1 14.2 35 292-328 237-275 (349)
108 2fn9_A Ribose ABC transporter, 33.9 2.2E+02 0.0077 24.3 15.2 34 292-327 190-224 (290)
109 2rgh_A Alpha-glycerophosphate 33.7 53 0.0018 32.8 5.8 36 137-175 29-64 (571)
110 2ywl_A Thioredoxin reductase r 33.6 59 0.002 26.3 5.2 32 143-176 3-34 (180)
111 2oln_A NIKD protein; flavoprot 33.6 40 0.0014 31.1 4.6 32 143-176 6-37 (397)
112 3dme_A Conserved exported prot 33.5 42 0.0014 30.1 4.6 31 143-175 6-36 (369)
113 1gud_A ALBP, D-allose-binding 33.4 74 0.0025 27.8 6.2 44 279-328 183-228 (288)
114 1u7z_A Coenzyme A biosynthesis 33.4 57 0.0019 29.1 5.4 25 151-175 33-57 (226)
115 1nf9_A Phenazine biosynthesis 33.3 61 0.0021 27.8 5.4 38 137-175 138-176 (207)
116 2cul_A Glucose-inhibited divis 33.2 37 0.0013 29.3 4.1 30 144-175 6-35 (232)
117 4ffl_A PYLC; amino acid, biosy 33.0 43 0.0015 30.9 4.7 32 142-175 2-33 (363)
118 2ioy_A Periplasmic sugar-bindi 32.7 82 0.0028 27.3 6.4 34 292-327 182-216 (283)
119 1vlv_A Otcase, ornithine carba 32.6 77 0.0026 29.9 6.4 36 142-177 168-203 (325)
120 3brs_A Periplasmic binding pro 32.2 64 0.0022 27.9 5.5 36 292-329 189-226 (289)
121 1nv8_A HEMK protein; class I a 31.9 44 0.0015 30.2 4.5 31 297-330 126-156 (284)
122 3irv_A Cysteine hydrolase; str 31.8 64 0.0022 28.4 5.4 60 106-175 113-173 (233)
123 4dzr_A Protein-(glutamine-N5) 31.8 67 0.0023 26.3 5.4 48 277-330 15-64 (215)
124 3hu5_A Isochorismatase family 31.8 66 0.0023 27.6 5.4 40 136-176 121-161 (204)
125 1duv_G Octase-1, ornithine tra 31.6 94 0.0032 29.4 6.8 36 142-177 156-191 (333)
126 1dbq_A Purine repressor; trans 31.5 1E+02 0.0035 26.5 6.7 35 292-328 186-224 (289)
127 3e05_A Precorrin-6Y C5,15-meth 31.3 63 0.0021 26.8 5.1 34 295-330 41-74 (204)
128 3da1_A Glycerol-3-phosphate de 31.3 39 0.0013 33.7 4.3 31 143-175 20-50 (561)
129 3hb7_A Isochorismatase hydrola 31.2 69 0.0024 27.5 5.4 40 136-176 115-155 (204)
130 1qpz_A PURA, protein (purine n 31.1 1.1E+02 0.0039 27.3 7.2 35 292-328 237-275 (340)
131 3e03_A Short chain dehydrogena 31.0 2.7E+02 0.0091 24.3 11.9 36 140-177 6-41 (274)
132 3huu_A Transcription regulator 30.8 2.7E+02 0.0091 24.2 18.0 34 292-327 201-238 (305)
133 3lop_A Substrate binding perip 30.5 2.9E+02 0.0099 24.6 15.7 34 293-327 196-229 (364)
134 3utn_X Thiosulfate sulfurtrans 30.5 74 0.0025 29.8 5.9 30 295-324 276-306 (327)
135 3lqy_A Putative isochorismatas 30.3 70 0.0024 27.0 5.3 39 137-176 109-148 (190)
136 2g1u_A Hypothetical protein TM 30.2 91 0.0031 24.9 5.8 34 140-175 18-51 (155)
137 4a5l_A Thioredoxin reductase; 30.2 46 0.0016 29.3 4.2 29 143-173 6-34 (314)
138 1usg_A Leucine-specific bindin 30.1 2.8E+02 0.0095 24.2 16.9 36 293-329 193-228 (346)
139 3clk_A Transcription regulator 30.0 1.1E+02 0.0039 26.4 6.8 35 292-328 184-222 (290)
140 4f06_A Extracellular ligand-bi 30.0 3.1E+02 0.011 24.7 13.5 28 293-320 194-221 (371)
141 3tg2_A Vibriobactin-specific i 29.7 66 0.0023 28.3 5.2 40 136-176 133-173 (223)
142 4fk1_A Putative thioredoxin re 29.7 54 0.0018 29.1 4.6 28 144-173 9-36 (304)
143 3g89_A Ribosomal RNA small sub 29.6 23 0.00079 31.4 2.1 34 295-330 81-114 (249)
144 4at0_A 3-ketosteroid-delta4-5a 29.6 48 0.0017 32.3 4.6 31 143-175 43-73 (510)
145 3kvo_A Hydroxysteroid dehydrog 29.6 3.3E+02 0.011 25.0 11.9 36 140-177 45-80 (346)
146 3h75_A Periplasmic sugar-bindi 29.5 3E+02 0.01 24.4 15.8 35 292-328 204-242 (350)
147 4evq_A Putative ABC transporte 29.4 3E+02 0.01 24.4 14.5 34 293-327 206-239 (375)
148 2i0z_A NAD(FAD)-utilizing dehy 29.2 55 0.0019 31.2 4.9 34 139-175 25-58 (447)
149 1o98_A 2,3-bisphosphoglycerate 29.2 87 0.003 31.4 6.4 49 128-176 96-153 (511)
150 1ryi_A Glycine oxidase; flavop 29.1 54 0.0019 29.8 4.6 31 143-175 19-49 (382)
151 3cgv_A Geranylgeranyl reductas 28.9 55 0.0019 29.9 4.6 32 143-176 6-37 (397)
152 3txy_A Isochorismatase family 28.9 81 0.0028 27.0 5.5 38 137-175 122-160 (199)
153 3rp8_A Flavoprotein monooxygen 28.7 56 0.0019 30.3 4.7 32 143-176 25-56 (407)
154 2fq1_A Isochorismatase; ENTB, 28.7 74 0.0025 28.7 5.4 40 136-176 140-180 (287)
155 2q5c_A NTRC family transcripti 28.4 67 0.0023 27.6 4.9 38 130-175 132-169 (196)
156 2hsg_A Glucose-resistance amyl 28.3 1E+02 0.0035 27.4 6.4 35 292-328 238-276 (332)
157 3ot4_A Putative isochorismatas 28.2 87 0.003 27.8 5.7 39 137-176 155-194 (236)
158 3r7f_A Aspartate carbamoyltran 28.2 1E+02 0.0036 28.7 6.4 36 142-177 148-184 (304)
159 3oqp_A Putative isochorismatas 28.2 79 0.0027 27.5 5.3 38 137-175 105-143 (211)
160 1yvv_A Amine oxidase, flavin-c 28.2 54 0.0018 29.2 4.4 30 144-175 5-34 (336)
161 1jzt_A Hypothetical 27.5 kDa p 28.1 99 0.0034 27.7 6.1 33 142-176 60-95 (246)
162 1ml4_A Aspartate transcarbamoy 27.9 1.2E+02 0.0041 28.3 6.8 57 115-177 132-192 (308)
163 3csu_A Protein (aspartate carb 27.8 1.6E+02 0.0055 27.4 7.7 36 142-177 155-192 (310)
164 3alj_A 2-methyl-3-hydroxypyrid 27.6 61 0.0021 29.8 4.7 34 142-177 12-45 (379)
165 2x3n_A Probable FAD-dependent 27.5 59 0.002 30.0 4.6 31 143-175 8-38 (399)
166 4gcm_A TRXR, thioredoxin reduc 27.4 63 0.0021 28.6 4.6 27 144-172 9-35 (312)
167 3dtn_A Putative methyltransfer 27.3 85 0.0029 26.4 5.3 30 297-330 49-78 (234)
168 2aot_A HMT, histamine N-methyl 27.1 50 0.0017 29.4 4.0 34 297-330 57-92 (292)
169 4hb9_A Similarities with proba 26.8 65 0.0022 29.3 4.7 29 144-174 4-32 (412)
170 1vp8_A Hypothetical protein AF 26.8 2.9E+02 0.01 24.3 8.6 73 123-199 26-106 (201)
171 2nxc_A L11 mtase, ribosomal pr 26.8 76 0.0026 27.8 5.0 30 297-330 123-152 (254)
172 3ka7_A Oxidoreductase; structu 26.7 69 0.0024 29.6 5.0 31 143-175 2-32 (425)
173 1c0p_A D-amino acid oxidase; a 26.3 67 0.0023 29.2 4.7 31 143-175 8-38 (363)
174 3mcw_A Putative hydrolase; iso 26.3 85 0.0029 26.8 5.1 39 137-176 109-148 (198)
175 3nix_A Flavoprotein/dehydrogen 26.2 75 0.0026 29.4 5.1 32 143-176 7-38 (421)
176 2vk2_A YTFQ, ABC transporter p 26.0 1.1E+02 0.0038 26.8 6.1 34 293-328 191-228 (306)
177 2gf3_A MSOX, monomeric sarcosi 26.0 66 0.0023 29.2 4.6 31 143-175 5-35 (389)
178 2uzz_A N-methyl-L-tryptophan o 26.0 63 0.0022 29.2 4.5 32 143-176 4-35 (372)
179 3dlc_A Putative S-adenosyl-L-m 26.0 89 0.003 25.6 5.1 48 276-330 29-76 (219)
180 1dxh_A Ornithine carbamoyltran 25.9 1.5E+02 0.0051 28.0 7.1 65 107-177 123-191 (335)
181 2hqb_A Transcriptional activat 25.7 90 0.0031 27.8 5.4 31 294-328 182-212 (296)
182 1x9g_A Putative MAR1; structur 25.7 67 0.0023 27.7 4.3 36 140-176 106-142 (200)
183 3p2e_A 16S rRNA methylase; met 25.6 64 0.0022 27.9 4.2 34 294-329 24-57 (225)
184 1nba_A N-carbamoylsarcosine am 25.6 91 0.0031 28.2 5.4 38 137-175 160-198 (264)
185 2a67_A Isochorismatase family 25.5 84 0.0029 25.9 4.8 38 137-175 97-135 (167)
186 3efb_A Probable SOR-operon reg 25.4 76 0.0026 28.5 4.9 69 258-331 27-96 (266)
187 4h17_A Hydrolase, isochorismat 25.3 89 0.003 26.7 5.1 39 137-176 119-158 (197)
188 1qo8_A Flavocytochrome C3 fuma 25.3 62 0.0021 32.0 4.6 32 143-176 123-154 (566)
189 3dje_A Fructosyl amine: oxygen 25.3 59 0.002 30.5 4.2 32 143-176 8-40 (438)
190 3c3k_A Alanine racemase; struc 25.0 86 0.0029 27.2 5.0 35 292-328 183-221 (285)
191 3v76_A Flavoprotein; structura 25.0 69 0.0024 30.6 4.7 32 141-175 28-59 (417)
192 4dgk_A Phytoene dehydrogenase; 25.0 60 0.0021 31.0 4.3 29 143-173 3-31 (501)
193 3iup_A Putative NADPH:quinone 24.9 1.5E+02 0.0052 27.5 7.1 59 132-197 163-222 (379)
194 1k0i_A P-hydroxybenzoate hydro 24.9 58 0.002 30.0 4.0 30 144-175 5-34 (394)
195 3h5l_A Putative branched-chain 24.7 4E+02 0.014 24.3 12.6 35 293-327 219-253 (419)
196 2fca_A TRNA (guanine-N(7)-)-me 24.7 54 0.0019 27.9 3.5 30 297-330 43-72 (213)
197 4iin_A 3-ketoacyl-acyl carrier 24.6 3.4E+02 0.012 23.4 11.8 34 140-175 29-62 (271)
198 3gv0_A Transcriptional regulat 24.6 3.3E+02 0.011 23.3 17.7 35 292-328 187-225 (288)
199 3tpf_A Otcase, ornithine carba 24.6 1.8E+02 0.0061 27.1 7.3 62 109-177 116-181 (307)
200 3s2u_A UDP-N-acetylglucosamine 24.4 4.1E+02 0.014 24.2 13.0 50 143-198 5-58 (365)
201 3t7c_A Carveol dehydrogenase; 24.4 3.7E+02 0.013 23.7 12.8 34 140-175 28-61 (299)
202 2plw_A Ribosomal RNA methyltra 24.3 99 0.0034 25.3 5.1 36 294-330 22-58 (201)
203 1y56_B Sarcosine oxidase; dehy 24.2 62 0.0021 29.5 4.1 32 141-175 6-37 (382)
204 2iks_A DNA-binding transcripti 24.1 3.4E+02 0.012 23.2 16.9 35 292-328 196-234 (293)
205 2xdo_A TETX2 protein; tetracyc 24.1 72 0.0025 29.6 4.6 33 142-176 27-59 (398)
206 4f2g_A Otcase 1, ornithine car 24.0 1.4E+02 0.0047 27.9 6.4 35 142-177 155-189 (309)
207 2vou_A 2,6-dihydroxypyridine h 24.0 77 0.0026 29.4 4.7 32 142-175 6-37 (397)
208 2okg_A Central glycolytic gene 23.6 1.8E+02 0.0062 25.8 7.0 66 258-330 23-91 (255)
209 1t57_A Conserved protein MTH16 23.6 1.3E+02 0.0043 26.7 5.6 54 261-327 27-80 (206)
210 3sc4_A Short chain dehydrogena 23.4 3.8E+02 0.013 23.5 11.5 36 140-177 9-44 (285)
211 3llv_A Exopolyphosphatase-rela 23.4 2.3E+02 0.0079 21.7 6.9 31 143-175 8-38 (141)
212 3hm2_A Precorrin-6Y C5,15-meth 23.3 1.1E+02 0.0037 24.3 5.0 35 294-330 25-59 (178)
213 3ihm_A Styrene monooxygenase A 23.3 81 0.0028 29.9 4.8 32 143-176 24-55 (430)
214 3fbs_A Oxidoreductase; structu 23.2 86 0.0029 27.0 4.6 31 143-175 4-34 (297)
215 3kl2_A Putative isochorismatas 23.1 1E+02 0.0035 26.9 5.1 51 121-175 134-185 (226)
216 4dmm_A 3-oxoacyl-[acyl-carrier 23.1 3.7E+02 0.013 23.3 11.8 34 140-175 28-61 (269)
217 4gqb_A Protein arginine N-meth 23.0 65 0.0022 33.3 4.2 34 296-329 361-394 (637)
218 1m6y_A S-adenosyl-methyltransf 22.9 91 0.0031 28.7 4.9 46 279-329 14-59 (301)
219 3grf_A Ornithine carbamoyltran 22.8 1.2E+02 0.0043 28.5 5.9 35 143-177 163-197 (328)
220 4eyg_A Twin-arginine transloca 22.8 3.9E+02 0.013 23.5 15.2 34 138-173 70-103 (368)
221 3ksu_A 3-oxoacyl-acyl carrier 22.8 3.7E+02 0.013 23.2 10.7 34 140-175 11-44 (262)
222 3i6i_A Putative leucoanthocyan 22.8 2.8E+02 0.0095 24.8 8.2 33 142-176 12-44 (346)
223 2w37_A Ornithine carbamoyltran 22.7 1.7E+02 0.0057 28.0 6.8 36 142-177 177-212 (359)
224 3ces_A MNMG, tRNA uridine 5-ca 22.7 75 0.0026 32.9 4.6 31 143-175 30-60 (651)
225 3orq_A N5-carboxyaminoimidazol 22.5 1.2E+02 0.0041 28.3 5.8 32 142-175 13-44 (377)
226 3ps9_A TRNA 5-methylaminomethy 22.5 74 0.0025 32.2 4.6 32 142-175 273-304 (676)
227 4e3z_A Putative oxidoreductase 22.4 3.7E+02 0.013 23.1 11.7 32 143-175 28-59 (272)
228 3nrn_A Uncharacterized protein 22.1 93 0.0032 28.9 4.9 30 143-174 2-31 (421)
229 2wdq_A Succinate dehydrogenase 22.1 79 0.0027 31.7 4.6 31 143-175 9-39 (588)
230 3e1t_A Halogenase; flavoprotei 22.0 74 0.0025 30.9 4.3 32 143-176 9-40 (512)
231 3lzw_A Ferredoxin--NADP reduct 21.9 92 0.0031 27.3 4.6 32 143-176 9-40 (332)
232 3itj_A Thioredoxin reductase 1 21.9 80 0.0027 27.8 4.2 31 142-174 23-53 (338)
233 3c4a_A Probable tryptophan hyd 21.7 93 0.0032 28.6 4.8 31 143-175 2-34 (381)
234 3f8d_A Thioredoxin reductase ( 21.6 95 0.0033 27.0 4.6 31 143-175 17-47 (323)
235 4a9w_A Monooxygenase; baeyer-v 21.6 91 0.0031 27.6 4.5 31 143-175 5-35 (357)
236 3c96_A Flavin-containing monoo 21.5 87 0.003 29.1 4.6 32 143-176 6-38 (410)
237 3i09_A Periplasmic branched-ch 21.5 4.3E+02 0.015 23.5 14.2 34 138-173 69-102 (375)
238 3q2o_A Phosphoribosylaminoimid 21.5 1.3E+02 0.0043 28.1 5.7 31 143-175 16-46 (389)
239 3grz_A L11 mtase, ribosomal pr 21.4 1.7E+02 0.0057 24.0 5.9 29 297-330 65-93 (205)
240 2gag_B Heterotetrameric sarcos 21.4 91 0.0031 28.5 4.6 32 143-176 23-56 (405)
241 3cty_A Thioredoxin reductase; 21.3 96 0.0033 27.4 4.6 30 143-174 18-47 (319)
242 3cp8_A TRNA uridine 5-carboxym 21.2 83 0.0028 32.4 4.6 31 143-175 23-53 (641)
243 2o8n_A APOA-I binding protein; 21.2 1.3E+02 0.0045 27.3 5.6 33 142-176 81-116 (265)
244 1o9g_A RRNA methyltransferase; 21.2 1.1E+02 0.0037 26.3 4.9 34 296-329 53-86 (250)
245 2qcu_A Aerobic glycerol-3-phos 21.1 73 0.0025 30.9 4.1 31 142-175 5-35 (501)
246 3c4n_A Uncharacterized protein 21.1 89 0.003 29.2 4.5 31 143-175 38-70 (405)
247 1y0p_A Fumarate reductase flav 21.0 72 0.0025 31.6 4.1 32 141-175 127-158 (571)
248 3dxy_A TRNA (guanine-N(7)-)-me 20.8 82 0.0028 27.0 4.0 30 297-330 39-68 (218)
249 2fqx_A Membrane lipoprotein TM 20.8 1.2E+02 0.004 27.4 5.2 33 294-328 189-224 (318)
250 3osu_A 3-oxoacyl-[acyl-carrier 20.8 3.9E+02 0.013 22.7 11.8 32 142-175 6-37 (246)
251 2bry_A NEDD9 interacting prote 20.8 1.3E+02 0.0043 29.4 5.7 32 142-175 93-124 (497)
252 2nyu_A Putative ribosomal RNA 20.8 94 0.0032 25.2 4.2 32 296-330 26-65 (196)
253 2h88_A Succinate dehydrogenase 20.8 86 0.003 31.9 4.6 31 143-175 20-50 (621)
254 3jvd_A Transcriptional regulat 20.7 1.7E+02 0.0059 26.1 6.3 33 294-328 232-268 (333)
255 3hs3_A Ribose operon repressor 20.7 1E+02 0.0036 26.6 4.7 44 278-327 167-214 (277)
256 2gqf_A Hypothetical protein HI 20.6 78 0.0027 30.0 4.1 32 142-176 6-37 (401)
257 3is3_A 17BETA-hydroxysteroid d 20.5 4.1E+02 0.014 22.9 11.5 34 140-175 18-51 (270)
258 3pvc_A TRNA 5-methylaminomethy 20.1 71 0.0024 32.5 3.8 31 143-175 266-296 (689)
259 3ihg_A RDME; flavoenzyme, anth 20.0 86 0.0029 30.5 4.3 31 143-175 7-37 (535)
260 3k7m_X 6-hydroxy-L-nicotine ox 20.0 1E+02 0.0035 28.5 4.7 30 143-174 3-32 (431)
261 4hc4_A Protein arginine N-meth 20.0 65 0.0022 30.8 3.3 33 294-329 83-115 (376)
262 4iiu_A 3-oxoacyl-[acyl-carrier 20.0 3.5E+02 0.012 23.2 8.1 35 140-176 26-60 (267)
No 1
>4d9b_A D-cysteine desulfhydrase; fold type II PLP-dependent enzyme or tryptophan synthase BET like family, PLP dependent enzyme, lyase; HET: PMP; 1.67A {Salmonella typhimurium} PDB: 4d96_A* 4d9c_A* 4d9e_A* 4d9f_A* 4d97_A* 4d8w_A* 4d8u_A* 4d8t_A* 4d92_A* 4d99_A*
Probab=100.00 E-value=2.1e-39 Score=313.74 Aligned_cols=208 Identities=21% Similarity=0.227 Sum_probs=175.3
Q ss_pred ccccCCCCcCCCCCccccCCCCeEEEEeCCCCCCCChhHHHHHHHhhhHHHHhcCCCEEEEeCCccchHHHHHHHHHHHh
Q 019910 86 ISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIVTDLVTCGGCQSAHATAVAVSCAER 165 (334)
Q Consensus 86 ~~~~~~~Tp~l~~~~l~~~~g~~lyvKrDDl~~p~~gGnK~RkL~~lL~~a~~~g~~~VVt~Gg~qsNh~~AvAaaaa~~ 165 (334)
+....+-||++..+.|++..|.+||+||||+|++.+||||+|++.+++.+++++|.++||++||++|||++|+|++|+++
T Consensus 26 i~~~~~~TPL~~~~~l~~~~g~~v~~K~E~l~p~~~gs~K~R~~~~~l~~a~~~G~~~vv~~s~tsGN~g~alA~aa~~~ 105 (342)
T 4d9b_A 26 LEFIGAPTPLEYLPRLSDYLGREIYIKRDDVTPIAMGGNKLRKLEFLVADALREGADTLITAGAIQSNHVRQTAAVAAKL 105 (342)
T ss_dssp CCSSCSCCCEEECHHHHHHHTSCEEEEEGGGCSSTTCCTHHHHHHHHHHHHHHTTCCEEEEEEETTCHHHHHHHHHHHHH
T ss_pred ccccCCCCceeEhhhhHHhhCCEEEEEeCCCCCCCCcchHHHhHHHHHHHHHHcCCCEEEEcCCcccHHHHHHHHHHHHh
Confidence 45566779999998888888899999999997655699999999999999999999999999877999999999999999
Q ss_pred CCeEEEEeCCCCCcc-----ccchhHHHHHCC-eEEEECCCChHHHHHHHHHHHHHHhccCCCccchhhhhhhhHhhhhh
Q 019910 166 GLKSHLLLRGEQPQI-----LTGYNLISTIYG-KVTYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASLTAQKS 239 (334)
Q Consensus 166 Gl~~~ivv~~~~p~~-----~~gn~~~~~~~G-~V~~v~~~~y~~~~~~~~~~a~~~~~~~g~~~w~~~~~~~~~~~~~~ 239 (334)
|++|++|||.+.|.. ..+|+.+++.|| +|+.+++.. ++++..+..++
T Consensus 106 G~~~~iv~p~~~~~~~~~~~~~~k~~~~~~~GA~V~~~~~~~--~~~~~~~~~a~------------------------- 158 (342)
T 4d9b_A 106 GLHCVALLENPIGTTAENYLTNGNRLLLDLFNTQIEMCDALT--DPDAQLQTLAT------------------------- 158 (342)
T ss_dssp TCEEEEEEECTTCCCCHHHHHSHHHHHHHHTTCEEEECSCCS--SHHHHHHHHHH-------------------------
T ss_pred CCcEEEEEeCCCCCccccccccchHHHHHHCCCEEEEECchh--hHHHHHHHHHH-------------------------
Confidence 999999999988753 136888999999 999998752 22233222111
Q ss_pred hcccccchhhhhccccccCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhcCCCCCCEEEEcCCchhHHHHHHHHHHHcCC
Q 019910 240 RASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVALLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGLGAICLGC 319 (334)
Q Consensus 240 ~~~~~~~~~~~~~l~~~~~~~y~IpeGgs~p~a~~G~~~la~EI~eq~~~g~~~~D~Vvvp~GtGgt~aGl~~g~k~lg~ 319 (334)
++..+.+++|++|.++.||.+..||.+++.||.+|+... ..+|+||+|+|||||++|++.+++.+++
T Consensus 159 ------------~l~~~~~~~~~~p~~~~n~~~~~G~~t~~~EI~~q~~~~-~~~d~vv~~vGtGGt~aGi~~~~k~~~~ 225 (342)
T 4d9b_A 159 ------------RIEAQGFRPYVIPVGGSSALGAMGYVESALEIAQQCEEV-VGLSSVVVASGSAGTHAGLAVGLEHLMP 225 (342)
T ss_dssp ------------HHHHTTCCEEECCGGGCSHHHHHHHHHHHHHHHHHHTTT-CCCCEEEEEESSSHHHHHHHHHHHHHCT
T ss_pred ------------HHHhcCCceEEeCCCCCChHHHHHHHHHHHHHHHHHhcc-CCCCEEEEeCCCCHHHHHHHHHHHhhCC
Confidence 123345578999999999999999999999999998311 3699999999999999999999999999
Q ss_pred CCeEEEEEeccCCC
Q 019910 320 VPLFNTLLVKLSRG 333 (334)
Q Consensus 320 ~~~VigV~~~gs~~ 333 (334)
.++||||++.++..
T Consensus 226 ~~~vigVe~~~~~~ 239 (342)
T 4d9b_A 226 DVELIGVTVSRSVA 239 (342)
T ss_dssp TSEEEEEESSSCHH
T ss_pred CCeEEEEEecCcHH
Confidence 99999999998753
No 2
>1j0a_A 1-aminocyclopropane-1-carboxylate deaminase; PLP dependent, lyase; HET: PLP; 2.50A {Pyrococcus horikoshii} SCOP: c.79.1.1 PDB: 1j0b_A*
Probab=100.00 E-value=1.9e-38 Score=304.39 Aligned_cols=206 Identities=23% Similarity=0.279 Sum_probs=172.4
Q ss_pred ccccCCCCcCCCCCccccCCCCeEEEEeCCCCCCCChhHHHHHHHhhhHHHHhcCCCEEEEeCCccchHHHHHHHHHHHh
Q 019910 86 ISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIVTDLVTCGGCQSAHATAVAVSCAER 165 (334)
Q Consensus 86 ~~~~~~~Tp~l~~~~l~~~~g~~lyvKrDDl~~p~~gGnK~RkL~~lL~~a~~~g~~~VVt~Gg~qsNh~~AvAaaaa~~ 165 (334)
+....+-||++..+.+++..|.+||+||||++++.+||||+|++.+++.+++++|.++||++|+++|||++|+|++|+++
T Consensus 15 i~~~~~~TPL~~~~~l~~~~g~~i~~K~E~~~p~~~gs~K~R~~~~~i~~a~~~G~~~vv~~G~ssGN~g~alA~~a~~~ 94 (325)
T 1j0a_A 15 VELIPWETPIQYLPNISREIGADVYIKRDDLTGLGIGGNKIRKLEYLLGDALSKGADVVITVGAVHSNHAFVTGLAAKKL 94 (325)
T ss_dssp CCCCCSCCCEEECHHHHHHHTSEEEEEEGGGSCSTTCSTHHHHHHHHHHHHHHTTCSEEEEECCTTCHHHHHHHHHHHHT
T ss_pred cccccCCCCceEhhhhhhhhCCEEEEEecccCCCCCCchHHHHHHHHHHHHHHcCCCEEEEcCCcchHHHHHHHHHHHHh
Confidence 34566779999888888777899999999996544688999999999999999999999999878999999999999999
Q ss_pred CCeEEEEeCCCC-CccccchhHHHHHCC-eEEEECCCChHHHHHHHHHHHHHHhccCCCccchhhhhhhhHhhhhhhccc
Q 019910 166 GLKSHLLLRGEQ-PQILTGYNLISTIYG-KVTYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASLTAQKSRASC 243 (334)
Q Consensus 166 Gl~~~ivv~~~~-p~~~~gn~~~~~~~G-~V~~v~~~~y~~~~~~~~~~a~~~~~~~g~~~w~~~~~~~~~~~~~~~~~~ 243 (334)
|++|++|||++. +. .|..+++.|| +|+.+++..+..........
T Consensus 95 G~~~~iv~p~~~~~~---~k~~~~~~~GA~v~~~~~~~~~~~~~~~~~~------------------------------- 140 (325)
T 1j0a_A 95 GLDAILVLRGKEELK---GNYLLDKIMGIETRVYDAKDSFELMKYAEEI------------------------------- 140 (325)
T ss_dssp TCEEEEEEESCCCSC---HHHHHHHHTTCEEEEESCCSTTTHHHHHHHH-------------------------------
T ss_pred CCcEEEEECCCCCCC---chHHHHHHCCCEEEEeCcchhhhhhHHHHHH-------------------------------
Confidence 999999999977 53 4778999999 99999875432100011111
Q ss_pred ccchhhhhccccccCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhcCCCCCCEEEEcCCchhHHHHHHHHHHHcCCCCeE
Q 019910 244 LGQMDAHKGIDNCRKKVLIVNEGAGDAVALLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGLGAICLGCVPLF 323 (334)
Q Consensus 244 ~~~~~~~~~l~~~~~~~y~IpeGgs~p~a~~G~~~la~EI~eq~~~g~~~~D~Vvvp~GtGgt~aGl~~g~k~lg~~~~V 323 (334)
++++..+.+.+|++|.|+.||.+.+||.+++.||.+|+ + ..+|+||+|+|||||++|++.+++.+++.++|
T Consensus 141 ------a~~l~~~~~~~~~~p~~~~n~~~~~g~~t~~~Ei~~q~--~-~~~d~vv~~vGtGGt~~Gi~~~lk~~~~~~~v 211 (325)
T 1j0a_A 141 ------AEELKREGRKPYVIPPGGASPIGTLGYVRAVGEIATQS--E-VKFDSIVVAAGSGGTLAGLSLGLSILNEDIRP 211 (325)
T ss_dssp ------HHHHTTSSCCEEEECGGGCSHHHHTHHHHHHHHHHHHC--C-CCCSEEEEEESSSHHHHHHHHHHHHTTCCCEE
T ss_pred ------HHHHHHcCCceEEEcCCCCCHHHHHHHHHHHHHHHHhh--C-CCCCEEEEeCCchHhHHHHHHHHHhcCCCceE
Confidence 11233345567889999999999999999999999997 3 35899999999999999999999999999999
Q ss_pred EEEEeccCCCC
Q 019910 324 NTLLVKLSRGF 334 (334)
Q Consensus 324 igV~~~gs~~~ 334 (334)
|||++.++..|
T Consensus 212 igVe~~~~~~~ 222 (325)
T 1j0a_A 212 VGIAVGRFGEV 222 (325)
T ss_dssp EEEECSSCSSS
T ss_pred EEEEecCchHH
Confidence 99999998754
No 3
>1f2d_A 1-aminocyclopropane-1-carboxylate deaminase; carbon-carbon L open twisted alpha/beta, lyase; HET: PLP; 2.00A {Williopsis saturnus} SCOP: c.79.1.1 PDB: 1j0e_A* 1j0d_A* 1j0c_A*
Probab=100.00 E-value=4.7e-39 Score=310.47 Aligned_cols=206 Identities=21% Similarity=0.208 Sum_probs=174.0
Q ss_pred ccccCCCCcCCCCCccccCC-C-CeEEEEeCCCC-CCCChhHHHHHHHhhhHHHHhcCCCEEEEeCCccchHHHHHHHHH
Q 019910 86 ISFLNNTCPFLGDDMIMRDE-D-RCFYVVRDDLL-HPLVNGNKARKMDALLPLLEDHIVTDLVTCGGCQSAHATAVAVSC 162 (334)
Q Consensus 86 ~~~~~~~Tp~l~~~~l~~~~-g-~~lyvKrDDl~-~p~~gGnK~RkL~~lL~~a~~~g~~~VVt~Gg~qsNh~~AvAaaa 162 (334)
+....+-||++..++|++.. | .+||+||||+| ++.+||||+|++.++|.+|.++|.++||+||+++|||++|+|++|
T Consensus 9 i~~~~~~TPL~~~~~l~~~~~g~~~i~~K~E~~n~p~~~Gs~K~R~a~~~l~~a~~~g~~~vv~~G~ssGN~g~alA~~a 88 (341)
T 1f2d_A 9 YPLTFGPSPISNLNRLSQHLGSKVNVYAKREDCNSGLAFGGNKLRKLEYIVPDIVEGDYTHLVSIGGRQSNQTRMVAALA 88 (341)
T ss_dssp CCCSSSSCCEEECHHHHHHTTTCSEEEEEEGGGSCSSTTCCHHHHHHTTTHHHHHHSCCSEEEEEEETTCHHHHHHHHHH
T ss_pred cccCCCCCcceeHHhHHHhhCCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHHHHcCCCEEEEcCCcchHHHHHHHHHH
Confidence 45667789999988888877 7 89999999997 655799999999999999999999999999888999999999999
Q ss_pred HHhCCeEEEEeCCCCC-----cc---ccchhHHHHHCC-eEEEECCCChH----HHHHHHHHHHHHHhccCCCccchhhh
Q 019910 163 AERGLKSHLLLRGEQP-----QI---LTGYNLISTIYG-KVTYVPRTHYA----HRIEMLKSYANLVAGNNGDVVWCNEI 229 (334)
Q Consensus 163 a~~Gl~~~ivv~~~~p-----~~---~~gn~~~~~~~G-~V~~v~~~~y~----~~~~~~~~~a~~~~~~~g~~~w~~~~ 229 (334)
+++|++|++|||.+.+ .. ..+|..+++.|| +|+.++...+. ...+.++
T Consensus 89 ~~~G~~~~iv~p~~~~~~~~~~~~~~~~~k~~~~~~~GA~v~~~~~~~~~~~~~~~~~~a~------------------- 149 (341)
T 1f2d_A 89 AKLGKKCVLIQEDWVPIPEAEKDVYNRVGNIELSRIMGADVRVIEDGFDIGMRKSFANALQ------------------- 149 (341)
T ss_dssp HHHTCEEEEEEECCSCCCGGGTTTTTTSHHHHHHHHTTCEEEECCCCCCSSCCHHHHHHHH-------------------
T ss_pred HHhCCceEEEeccCCCccccccccccccccHHHHHhCCCEEEEeCCccchhHHHHHHHHHH-------------------
Confidence 9999999999999876 21 246889999999 99999875442 2222211
Q ss_pred hhhhHhhhhhhcccccchhhhhccccccCcEEEEcCC-CcchhHHHHHHHHHHHHHHhhhcCCCCCCEEEEcCCchhHHH
Q 019910 230 FEASLTAQKSRASCLGQMDAHKGIDNCRKKVLIVNEG-AGDAVALLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAV 308 (334)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~IpeG-gs~p~a~~G~~~la~EI~eq~~~g~~~~D~Vvvp~GtGgt~a 308 (334)
++..+.++.|++|++ +.||.+..||.+++.||.+|+...+..+|+||+|+|||||++
T Consensus 150 ----------------------~l~~~~~~~~~i~~~~~~np~~~~G~~t~~~Ei~~q~~~~~~~~d~vv~~vGtGgt~~ 207 (341)
T 1f2d_A 150 ----------------------ELEDAGHKPYPIPAGCSEHKYGGLGFVGFADEVINQEVELGIKFDKIVVCCVTGSTTA 207 (341)
T ss_dssp ----------------------HHHHTTCCEEEECGGGTTSTTTTTHHHHHHHHHHHHHHHHTCCCSEEEEEESSSHHHH
T ss_pred ----------------------HHHhcCCcEEEeCCCcCCCCccHHHHHHHHHHHHHHHHhcCCCCCEEEEecCchHhHH
Confidence 122334457889999 999999999999999999998421346999999999999999
Q ss_pred HHHHHHHHcCCCCeEEEEEeccCC
Q 019910 309 GLGLGAICLGCVPLFNTLLVKLSR 332 (334)
Q Consensus 309 Gl~~g~k~lg~~~~VigV~~~gs~ 332 (334)
|++.+++.+++.++|+||++.++.
T Consensus 208 Gi~~~~k~~~~~~~vigVe~~~~~ 231 (341)
T 1f2d_A 208 GILAGMAQYGRQDDVIAIDASFTS 231 (341)
T ss_dssp HHHHHHGGGTCGGGEEEEECSSCH
T ss_pred HHHHHHHhcCCCceEEEEEecCch
Confidence 999999999999999999999874
No 4
>1tzj_A ACC deaminase, 1-aminocyclopropane-1-carboxylate deaminase; substrate, PLP, crystal, complex, hydrolase; HET: PLP; 1.99A {Pseudomonas SP} SCOP: c.79.1.1 PDB: 1rqx_A* 1tz2_A* 1tyz_A* 1tzk_A* 1tzm_A*
Probab=100.00 E-value=1.1e-36 Score=292.69 Aligned_cols=208 Identities=20% Similarity=0.180 Sum_probs=168.5
Q ss_pred ccccCCCCcCCCCCccccCC-C-CeEEEEeCCCC-CCCChhHHHHHHHhhhHHHHhcCCCEEEEeCCccchHHHHHHHHH
Q 019910 86 ISFLNNTCPFLGDDMIMRDE-D-RCFYVVRDDLL-HPLVNGNKARKMDALLPLLEDHIVTDLVTCGGCQSAHATAVAVSC 162 (334)
Q Consensus 86 ~~~~~~~Tp~l~~~~l~~~~-g-~~lyvKrDDl~-~p~~gGnK~RkL~~lL~~a~~~g~~~VVt~Gg~qsNh~~AvAaaa 162 (334)
+....+-||++..+.|++.. | .+||+|+||+| ++.+||||+|++.+++.++.++|.++||++|+++|||++|+|++|
T Consensus 9 i~~~~~~TPL~~~~~l~~~~~g~~~i~~K~E~~n~p~~~gs~K~R~a~~~l~~a~~~g~~~vv~~GassGN~g~alA~~a 88 (338)
T 1tzj_A 9 YPLTFGPTPIQPLARLSKHLGGKVHLYAKREDCNSGLAFGGNKTRKLEYLIPEALAQGCDTLVSIGGIQSNQTRQVAAVA 88 (338)
T ss_dssp CCCSSSSCCEEECHHHHHHTTSSSEEEEEEGGGSCSSTTCCHHHHHHHTTHHHHHHTTCCEEEEEEETTCHHHHHHHHHH
T ss_pred cccCCCCCccEEHHHHHHhhCCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHHHHcCCCEEEEcCCchhHHHHHHHHHH
Confidence 46677789999988888877 7 89999999995 534689999999999999999999999998888999999999999
Q ss_pred HHhCCeEEEEeCCCCCcc-----ccchhHHHHHCC-eEEEECCCChHHH-HHHHHHHHHHHhccCCCccchhhhhhhhHh
Q 019910 163 AERGLKSHLLLRGEQPQI-----LTGYNLISTIYG-KVTYVPRTHYAHR-IEMLKSYANLVAGNNGDVVWCNEIFEASLT 235 (334)
Q Consensus 163 a~~Gl~~~ivv~~~~p~~-----~~gn~~~~~~~G-~V~~v~~~~y~~~-~~~~~~~a~~~~~~~g~~~w~~~~~~~~~~ 235 (334)
+++|++|++|||.+.+.. ..+|..+++.|| +|+.++.. +++. .+.....+
T Consensus 89 ~~~G~~~~iv~p~~~~~~~~~~~~~~k~~~~~~~GA~V~~~~~~-~~~~~~~~~~~~a---------------------- 145 (338)
T 1tzj_A 89 AHLGMKCVLVQENWVNYSDAVYDRVGNIQMSRILGADVRLVPDG-FDIGFRRSWEDAL---------------------- 145 (338)
T ss_dssp HHHTCEEEEEEECCSSCCCTTTTTSHHHHHHHHTTCEEEECCC--------CHHHHHH----------------------
T ss_pred HHhCCceEEEecCCCCccccccccCccHHHHHhCCCEEEEeCCc-chhhHHHHHHHHH----------------------
Confidence 999999999999987653 245888999999 99999864 3321 00011111
Q ss_pred hhhhhcccccchhhhhccccccCcEEEEcCC-CcchhHHHHHHHHHHHHHHhhhcCCCCCCEEEEcCCchhHHHHHHHHH
Q 019910 236 AQKSRASCLGQMDAHKGIDNCRKKVLIVNEG-AGDAVALLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGLGA 314 (334)
Q Consensus 236 ~~~~~~~~~~~~~~~~~l~~~~~~~y~IpeG-gs~p~a~~G~~~la~EI~eq~~~g~~~~D~Vvvp~GtGgt~aGl~~g~ 314 (334)
+++.+..+.+|++|+| +.||....|+.+++.||.+|+...+..+|+||+|+|||||++|++.++
T Consensus 146 ---------------~~l~~~~~~~~~~p~~~~~n~~~~~g~~t~~~Ei~~q~~~~~~~~d~vv~~vG~GGt~~Gi~~~~ 210 (338)
T 1tzj_A 146 ---------------ESVRAAGGKPYAIPAGCSDHPLGGLGFVGFAEEVRAQEAELGFKFDYVVVCSVTGSTQAGMVVGF 210 (338)
T ss_dssp ---------------HHHHHTTCCEEECCGGGTSSTTTTTHHHHHHHHHHHHHHHHTSCCSEEEEEESSSHHHHHHHHHH
T ss_pred ---------------HHHHhcCCceEEeCCCcCCCcccHHHHHHHHHHHHHHHHhcCCCCCEEEEecCCcHHHHHHHHHH
Confidence 1122334567889999 899999999999999999998411125899999999999999999999
Q ss_pred HHc-CCCCeEEEEEeccCC
Q 019910 315 ICL-GCVPLFNTLLVKLSR 332 (334)
Q Consensus 315 k~l-g~~~~VigV~~~gs~ 332 (334)
+.+ ++. +||||++.++.
T Consensus 211 k~~g~~~-~vigve~~~~~ 228 (338)
T 1tzj_A 211 AADGRAD-RVIGVDASAKP 228 (338)
T ss_dssp HTTTCGG-GEEEEECSSCH
T ss_pred HhhCCCC-eEEEEEccCch
Confidence 998 788 99999998874
No 5
>3aey_A Threonine synthase; PLP, pyridoxal phosphate, lyase; 1.92A {Thermus thermophilus} PDB: 1uin_A* 1uim_A* 3aex_A* 1v7c_A
Probab=100.00 E-value=3.1e-35 Score=285.02 Aligned_cols=210 Identities=14% Similarity=0.129 Sum_probs=175.2
Q ss_pred CCceeecccccccccCCCCCCCcccccCCCCcCCCC--CccccCCCCeEEEEeCCCCCCCChhHHHHHHHhhhHHHHhcC
Q 019910 63 DSKIHQIKLFTTTEKHGGGPLGGISFLNNTCPFLGD--DMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHI 140 (334)
Q Consensus 63 ~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~Tp~l~~--~~l~~~~g~~lyvKrDDl~~p~~gGnK~RkL~~lL~~a~~~g 140 (334)
..+|||.++||. ......+....+-||++.. +.+++..|.+||+|+|++| | +||||+|++.+++..+.++|
T Consensus 4 ~~~~ry~~~lp~-----~~~~~~v~~~~g~TPL~~~~~~~l~~~~g~~v~~K~E~~~-p-tgS~KdR~a~~~l~~a~~~g 76 (351)
T 3aey_A 4 PLIERYRNLLPV-----SEKTPVISLLEGSTPLIPLKGPEEARKKGIRLYAKYEGLN-P-TGSFKDRGMTLAVSKAVEGG 76 (351)
T ss_dssp CHHHHTGGGTTC-----CTTSCCCCSCCCCCCEEECCCCHHHHTTTCEEEEEEGGGS-T-TSBTTHHHHHHHHHHHHHTT
T ss_pred CcccccHhhCCC-----cccCCceecCCCCCCeeecCchhhHHHhCCeEEEEecCCC-C-cccHHHHHHHHHHHHHHhcC
Confidence 568999999996 2223346788899999998 8888888999999999996 7 79999999999999999999
Q ss_pred CCEEEEeCCccchHHHHHHHHHHHhCCeEEEEeCCC-CCccccchhHHHHHCC-eEEEECCCChHHHHHHHHHHHHHHhc
Q 019910 141 VTDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGE-QPQILTGYNLISTIYG-KVTYVPRTHYAHRIEMLKSYANLVAG 218 (334)
Q Consensus 141 ~~~VVt~Gg~qsNh~~AvAaaaa~~Gl~~~ivv~~~-~p~~~~gn~~~~~~~G-~V~~v~~~~y~~~~~~~~~~a~~~~~ 218 (334)
.++||+++ +|||++|+|++|+++|++|++|||.+ .+. .|..+++.|| +|+.++. .|++..+.+++
T Consensus 77 ~~~vv~~S--sGN~g~alA~~a~~~G~~~~iv~p~~~~~~---~k~~~~~~~GA~V~~v~~-~~~~~~~~a~~------- 143 (351)
T 3aey_A 77 AQAVACAS--TGNTAASAAAYAARAGILAIVVLPAGYVAL---GKVAQSLVHGARIVQVEG-NFDDALRLTQK------- 143 (351)
T ss_dssp CSEEEESC--SSHHHHHHHHHHHHHTSEEEEEEETTCSCH---HHHHHHHHTTCEEEEEES-CHHHHHHHHHH-------
T ss_pred CCEEEEeC--CCHHHHHHHHHHHHcCCCEEEEECCCCCCH---HHHHHHHHcCCEEEEECC-CHHHHHHHHHH-------
Confidence 99999863 69999999999999999999999997 654 4778999999 9999986 47765443322
Q ss_pred cCCCccchhhhhhhhHhhhhhhcccccchhhhhccccccCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhcCCCCCCEEE
Q 019910 219 NNGDVVWCNEIFEASLTAQKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVALLGVFRLLQYLSQDHLLGRKRAIKFV 298 (334)
Q Consensus 219 ~~g~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~IpeGgs~p~a~~G~~~la~EI~eq~~~g~~~~D~Vv 298 (334)
+....+ .|+++ + .||....||.+++.||.+|+. ..+|+||
T Consensus 144 ----------------------------------l~~~~~-~~~~~-~-~n~~~~~g~~t~~~Ei~~q~~---~~~d~vv 183 (351)
T 3aey_A 144 ----------------------------------LTEAFP-VALVN-S-VNPHRLEGQKTLAFEVVDELG---DAPHYHA 183 (351)
T ss_dssp ----------------------------------HHHHSS-EEECS-T-TCHHHHHHHHHHHHHHHHHHS---SCCSEEE
T ss_pred ----------------------------------HHHhcC-cEecC-C-CCccceeeeeeHHHHHHHHcC---CCCCEEE
Confidence 111222 45564 3 789999999999999999983 3589999
Q ss_pred EcCCchhHHHHHHHHHHHcCC------CCeEEEEEeccCC
Q 019910 299 VDAGTGTTAVGLGLGAICLGC------VPLFNTLLVKLSR 332 (334)
Q Consensus 299 vp~GtGgt~aGl~~g~k~lg~------~~~VigV~~~gs~ 332 (334)
+|+|||||++|++.+++.+.+ .++|+||++.++.
T Consensus 184 vpvG~GG~~~Gi~~~~k~~~~~G~~~~~~~vigve~~~~~ 223 (351)
T 3aey_A 184 LPVGNAGNITAHWMGYKAYHALGKAKRLPRMLGFQAAGAA 223 (351)
T ss_dssp EECSSSHHHHHHHHHHHHHHHHTSCSSCCEEEEEEEGGGC
T ss_pred EecCchHHHHHHHHHHHHHHhccccCCCCeEEEEecCCCC
Confidence 999999999999999998753 6899999998874
No 6
>4h27_A L-serine dehydratase/L-threonine deaminase; PLP dependent typeii, PLP binding, liver, lyase; HET: LLP; 1.30A {Homo sapiens} PDB: 1p5j_A* 1pwh_A* 1pwe_A*
Probab=100.00 E-value=8.8e-35 Score=283.95 Aligned_cols=210 Identities=13% Similarity=0.123 Sum_probs=160.7
Q ss_pred ccCCCCceeecccccccccCCCCCCCcccccCCCCcCCCCCccccCCCCeEEEEeCCCCCCCChhHHHHHHHhhhHHHHh
Q 019910 59 LTSPDSKIHQIKLFTTTEKHGGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLED 138 (334)
Q Consensus 59 ~~~p~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~Tp~l~~~~l~~~~g~~lyvKrDDl~~p~~gGnK~RkL~~lL~~a~~ 138 (334)
.+.....|++.+.+|.. .. ...-||++..++|++..|.+||+|+||+| | +||||+|++.+++..+.+
T Consensus 24 ~~~~~~l~r~~~~~~~~----~~-------~~~~TPL~~~~~l~~~~g~~v~~K~E~~~-p-tGSfK~Rga~~~i~~a~~ 90 (364)
T 4h27_A 24 MTGGQQMGRGSEFMMSG----EP-------LHVKTPIRDSMALSKMAGTSVYLKMDSAQ-P-SGSFKIRGIGHFCKRWAK 90 (364)
T ss_dssp ---------------------CC-------SSCCCCEEEEHHHHHHHTSEEEEEEGGGS-T-TSBTHHHHHHHHHHHHHH
T ss_pred cCCCcccchhHHhhhhc----CC-------CCCcCCeEEChhhHHHhCCEEEEEeCCCC-C-CCCHHHHHHHHHHHHHHh
Confidence 34455579999998851 11 23459999998888888999999999996 7 699999999999999999
Q ss_pred cCCCEEEEeCCccchHHHHHHHHHHHhCCeEEEEeCCCCCccccchhHHHHHCC-eEEEECCCChHHHHHHHHHHHHHHh
Q 019910 139 HIVTDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGEQPQILTGYNLISTIYG-KVTYVPRTHYAHRIEMLKSYANLVA 217 (334)
Q Consensus 139 ~g~~~VVt~Gg~qsNh~~AvAaaaa~~Gl~~~ivv~~~~p~~~~gn~~~~~~~G-~V~~v~~~~y~~~~~~~~~~a~~~~ 217 (334)
+|.++||++++ |||++|+|++|+++|++|+||||...+.. +...++.|| +|+.++. .|+++.+.+++
T Consensus 91 ~g~~~vv~aSs--GN~g~alA~aa~~~G~~~~iv~p~~~~~~---k~~~~~~~GA~Vv~v~~-~~~~a~~~a~~------ 158 (364)
T 4h27_A 91 QGCAHFVCSSS--GNAGMAAAYAARQLGVPATIVVPGTTPAL---TIERLKNEGATVKVVGE-LLDEAFELAKA------ 158 (364)
T ss_dssp TTCCEEEECCS--SHHHHHHHHHHHHHTCCEEEEEETTSCHH---HHHHHHTTTCEEEEECS-STTHHHHHHHH------
T ss_pred cCCCEEEEeCC--ChHHHHHHHHHHHhCCceEEEECCCCCHH---HHHHHHHcCCEEEEECC-CHHHHHHHHHH------
Confidence 99999998876 99999999999999999999999987653 667889999 9999985 57765544332
Q ss_pred ccCCCccchhhhhhhhHhhhhhhcccccchhhhhccccccCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhcCCCCCCEE
Q 019910 218 GNNGDVVWCNEIFEASLTAQKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVALLGVFRLLQYLSQDHLLGRKRAIKF 297 (334)
Q Consensus 218 ~~~g~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~IpeGgs~p~a~~G~~~la~EI~eq~~~g~~~~D~V 297 (334)
+....++.+++++ ..||....|+.+++.||.+|+ +. .+|+|
T Consensus 159 -----------------------------------l~~~~~~~~~~~~-~~np~~~~G~~t~~~Ei~~q~--~~-~~D~v 199 (364)
T 4h27_A 159 -----------------------------------LAKNNPGWVYIPP-FDDPLIWEGHASIVKELKETL--WE-KPGAI 199 (364)
T ss_dssp -----------------------------------HHHHSTTEEEECS-SCSHHHHHHHTHHHHHHHHHC--SS-CCSEE
T ss_pred -----------------------------------HHHhCCCeEEeCC-CCCHHHHHHHHHHHHHHHHHh--CC-CCCEE
Confidence 1112223344433 468999999999999999997 32 58999
Q ss_pred EEcCCchhHHHHHHHHHHHcC-CCCeEEEEEeccCC
Q 019910 298 VVDAGTGTTAVGLGLGAICLG-CVPLFNTLLVKLSR 332 (334)
Q Consensus 298 vvp~GtGgt~aGl~~g~k~lg-~~~~VigV~~~gs~ 332 (334)
|||+|||||++|++.+++.++ ++++|+||++.++.
T Consensus 200 vvpvG~GG~~aGi~~~~k~~~~p~~~vigVe~~~~~ 235 (364)
T 4h27_A 200 ALSVGGGGLLCGVVQGLQEVGWGDVPVIAMETFGAH 235 (364)
T ss_dssp EEECSSSHHHHHHHHHHHHTTCTTCCEEEEEETTSC
T ss_pred EEcCCccHHHHHHHHHHHHhCCCCCeEEEEecCCCh
Confidence 999999999999999999998 78999999998875
No 7
>2d1f_A Threonine synthase; amino acid synthesis, pyridoxal-5'-phosphate, PLP, lyase; HET: PLP; 2.50A {Mycobacterium tuberculosis}
Probab=100.00 E-value=8.8e-35 Score=283.11 Aligned_cols=211 Identities=11% Similarity=0.098 Sum_probs=175.6
Q ss_pred CCceeecccccccccCCCCCCCcccccCCCCcCCCCCccccCCCCeEEEEeCCCCCCCChhHHHHHHHhhhHHHHhcCCC
Q 019910 63 DSKIHQIKLFTTTEKHGGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIVT 142 (334)
Q Consensus 63 ~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~Tp~l~~~~l~~~~g~~lyvKrDDl~~p~~gGnK~RkL~~lL~~a~~~g~~ 142 (334)
...|+|.++||. ......+....+-||++..++|++..|.+||+|+|++| | +||||+|++.+++..+.++|.+
T Consensus 14 ~~~~ry~~~lp~-----~~~~~~v~~~~g~TPL~~~~~l~~~~g~~i~~K~E~~~-p-tgSfKdR~a~~~l~~a~~~g~~ 86 (360)
T 2d1f_A 14 GVIAAYRDRLPV-----GDDWTPVTLLEGGTPLIAATNLSKQTGCTIHLKVEGLN-P-TGSFKDRGMTMAVTDALAHGQR 86 (360)
T ss_dssp CHHHHTGGGSCC-----CSSCCCCCCCCCCCCEEECHHHHHHHSSEEEEEEGGGS-T-TSBTTHHHHHHHHHHHHHTTCS
T ss_pred cchhhhHHhCCC-----cccCCccccccCCCCCeechhhHHHhCCeEEEEECCCC-C-CcCHHHHHHHHHHHHHHHCCCC
Confidence 457899999995 22233467788999999999888888999999999996 7 7999999999999999999999
Q ss_pred EEEEeCCccchHHHHHHHHHHHhCCeEEEEeCCC-CCccccchhHHHHHCC-eEEEECCCChHHHHHHHHHHHHHHhccC
Q 019910 143 DLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGE-QPQILTGYNLISTIYG-KVTYVPRTHYAHRIEMLKSYANLVAGNN 220 (334)
Q Consensus 143 ~VVt~Gg~qsNh~~AvAaaaa~~Gl~~~ivv~~~-~p~~~~gn~~~~~~~G-~V~~v~~~~y~~~~~~~~~~a~~~~~~~ 220 (334)
+||+++ +|||++|+|++|+++|++|++|||.. .+. .|..+++.|| +|+.++. .|++..+.+++
T Consensus 87 ~vv~aS--sGN~g~alA~~a~~~G~~~~i~~p~~~~~~---~k~~~~~~~GA~v~~v~~-~~~~~~~~a~~--------- 151 (360)
T 2d1f_A 87 AVLCAS--TGNTSASAAAYAARAGITCAVLIPQGKIAM---GKLAQAVMHGAKIIQIDG-NFDDCLELARK--------- 151 (360)
T ss_dssp EEEECC--SSHHHHHHHHHHHHHTCEEEEEECSSCCCH---HHHHHHHHTTCEEEEBSS-CHHHHHHHHHH---------
T ss_pred EEEEeC--CcHHHHHHHHHHHHcCCcEEEEEcCCCCCH---HHHHHHHHcCCEEEEECC-CHHHHHHHHHH---------
Confidence 999863 69999999999999999999999987 543 4678999999 9999986 47765443322
Q ss_pred CCccchhhhhhhhHhhhhhhcccccchhhhhccccccCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhcCCCCCCEEEEc
Q 019910 221 GDVVWCNEIFEASLTAQKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVALLGVFRLLQYLSQDHLLGRKRAIKFVVD 300 (334)
Q Consensus 221 g~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~IpeGgs~p~a~~G~~~la~EI~eq~~~g~~~~D~Vvvp 300 (334)
+....++.|+++ + .||....||.+++.||.+|+. ..+|+||||
T Consensus 152 --------------------------------l~~~~~~~~~i~-~-~n~~~~~g~~t~~~Ei~~q~~---~~~d~vvvp 194 (360)
T 2d1f_A 152 --------------------------------MAADFPTISLVN-S-VNPVRIEGQKTAAFEIVDVLG---TAPDVHALP 194 (360)
T ss_dssp --------------------------------HHHHCTTEEECS-T-TCHHHHHHHTHHHHHHHHHHS---SCCSEEEEE
T ss_pred --------------------------------HHHhcCCeEEcC-C-CChhhhhhHHHHHHHHHHHcC---CCCCEEEEe
Confidence 112233467664 3 899999999999999999983 358999999
Q ss_pred CCchhHHHHHHHHHHHcCC------CCeEEEEEeccCC
Q 019910 301 AGTGTTAVGLGLGAICLGC------VPLFNTLLVKLSR 332 (334)
Q Consensus 301 ~GtGgt~aGl~~g~k~lg~------~~~VigV~~~gs~ 332 (334)
+|||||++|++.+++.+.+ .++|+||++.++.
T Consensus 195 vG~GG~~~Gi~~~~k~~~~~G~~~~~~~vigve~~~~~ 232 (360)
T 2d1f_A 195 VGNAGNITAYWKGYTEYHQLGLIDKLPRMLGTQAAGAA 232 (360)
T ss_dssp CSSSHHHHHHHHHHHHHHHTTSCSSCCEEEEEEEGGGC
T ss_pred CCchHHHHHHHHHHHHHHhccccccCceEEEEecCCCC
Confidence 9999999999999998753 6899999999874
No 8
>2zsj_A Threonine synthase; PLP dependent enzyme, lyase; HET: PLP; 1.80A {Aquifex aeolicus}
Probab=100.00 E-value=8.6e-35 Score=282.00 Aligned_cols=210 Identities=15% Similarity=0.133 Sum_probs=174.4
Q ss_pred CCceeecccccccccCCCCCCCcccccCCCCcCCCCCccccCCCCe--EEEEeCCCCCCCChhHHHHHHHhhhHHHHhcC
Q 019910 63 DSKIHQIKLFTTTEKHGGGPLGGISFLNNTCPFLGDDMIMRDEDRC--FYVVRDDLLHPLVNGNKARKMDALLPLLEDHI 140 (334)
Q Consensus 63 ~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~Tp~l~~~~l~~~~g~~--lyvKrDDl~~p~~gGnK~RkL~~lL~~a~~~g 140 (334)
...|+|.++||. ......+....+-||++..+.+++..|.+ ||+|+|++| | +||||+|++.+++..+.++|
T Consensus 6 ~~~~ry~~~lp~-----~~~~~~v~~~~g~TPL~~~~~l~~~~g~~~~i~~K~E~~~-p-tGS~KdR~a~~~l~~a~~~g 78 (352)
T 2zsj_A 6 GIIKQYKKYLPV-----DENTPIVTLYEGNTPLIEADNLARAIGFKGKIYLKYEGLN-P-TGSFKDRGMTLAISKAVEAG 78 (352)
T ss_dssp CHHHHSGGGSSC-----CTTCCCCCCCCCCCCEEECHHHHHHHTCCSEEEEEEGGGS-T-TSBTTHHHHHHHHHHHHHTT
T ss_pred ccceeeHhhCCC-----ccCCCceecccCCCCCeehHHHHHHhCCCceEEEEECCCC-C-CccHHHHHHHHHHHHHHhcC
Confidence 357999999996 22233568889999999998888878888 999999996 7 79999999999999999999
Q ss_pred CCEEEEeCCccchHHHHHHHHHHHhCCeEEEEeCCC-CCccccchhHHHHHCC-eEEEECCCChHHHHHHHHHHHHHHhc
Q 019910 141 VTDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGE-QPQILTGYNLISTIYG-KVTYVPRTHYAHRIEMLKSYANLVAG 218 (334)
Q Consensus 141 ~~~VVt~Gg~qsNh~~AvAaaaa~~Gl~~~ivv~~~-~p~~~~gn~~~~~~~G-~V~~v~~~~y~~~~~~~~~~a~~~~~ 218 (334)
.++||+++ +|||++|+|++|+++|++|++|||.+ .+. .|..+++.|| +|+.++. .|++..+.+++
T Consensus 79 ~~~vv~~S--sGN~g~alA~~a~~~G~~~~i~~p~~~~~~---~k~~~~~~~GA~v~~v~~-~~~~~~~~a~~------- 145 (352)
T 2zsj_A 79 KRAVICAS--TGNTSASAAAYAARAGLRAYVLLPKGAVAI---GKLSQAMIYGAKVLAIQG-TFDDALNIVRK------- 145 (352)
T ss_dssp CCEEEECC--SSHHHHHHHHHHHHHTCEEEEEEEGGGCCH---HHHHHHHHTTCEEEEESS-CHHHHHHHHHH-------
T ss_pred CCEEEEeC--CchHHHHHHHHHHhcCCcEEEEECCCCCCH---HHHHHHHHcCCEEEEECC-CHHHHHHHHHH-------
Confidence 99999863 69999999999999999999999986 553 4678999999 9999986 47765443322
Q ss_pred cCCCccchhhhhhhhHhhhhhhcccccchhhhhccccccCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhcCCCCCCEEE
Q 019910 219 NNGDVVWCNEIFEASLTAQKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVALLGVFRLLQYLSQDHLLGRKRAIKFV 298 (334)
Q Consensus 219 ~~g~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~IpeGgs~p~a~~G~~~la~EI~eq~~~g~~~~D~Vv 298 (334)
+....+ .|+++ + .||....||.+++.||.+|+. ..+|+||
T Consensus 146 ----------------------------------l~~~~~-~~~~~-~-~n~~~~~g~~t~~~Ei~~q~~---~~~d~vv 185 (352)
T 2zsj_A 146 ----------------------------------IGENFP-VEIVN-S-VNPYRIEGQKTAAFEICDTLG---EAPDYHF 185 (352)
T ss_dssp ----------------------------------HHHHSS-EEECS-T-TCTHHHHHHTHHHHHHHHHHS---SCCSEEE
T ss_pred ----------------------------------HHHHcC-cEECC-C-CCcchhhhHhHHHHHHHHHcC---CCCCEEE
Confidence 111222 45564 3 789999999999999999983 3589999
Q ss_pred EcCCchhHHHHHHHHHHHcCC------CCeEEEEEeccCC
Q 019910 299 VDAGTGTTAVGLGLGAICLGC------VPLFNTLLVKLSR 332 (334)
Q Consensus 299 vp~GtGgt~aGl~~g~k~lg~------~~~VigV~~~gs~ 332 (334)
+|+|||||++|++.+++.+.+ .++|+||++.++.
T Consensus 186 vpvG~GG~~~Gi~~~~k~~~~~G~~~~~~~vigve~~~~~ 225 (352)
T 2zsj_A 186 IPVGNAGNITAYWKGFKIYYEEGKITKLPRMMGWQAEGAA 225 (352)
T ss_dssp EECSSSHHHHHHHHHHHHHHHTTSCSSCCEEEEEEETTBC
T ss_pred EeCCCcHHHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCc
Confidence 999999999999999998753 6899999998874
No 9
>1p5j_A L-serine dehydratase; lyase; HET: PLP; 2.50A {Homo sapiens} SCOP: c.79.1.1 PDB: 1pwh_A* 1pwe_A*
Probab=100.00 E-value=1.4e-34 Score=283.46 Aligned_cols=205 Identities=13% Similarity=0.105 Sum_probs=160.2
Q ss_pred CceeecccccccccCCCCCCCcccccCCCCcCCCCCccccCCCCeEEEEeCCCCCCCChhHHHHHHHhhhHHHHhcCCCE
Q 019910 64 SKIHQIKLFTTTEKHGGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIVTD 143 (334)
Q Consensus 64 ~~~~~~~ll~~~~~~~~~~~~~~~~~~~~Tp~l~~~~l~~~~g~~lyvKrDDl~~p~~gGnK~RkL~~lL~~a~~~g~~~ 143 (334)
+.|+|.+++|. ... ..+-||++..++|++..|.+||+|+|++| | +||||+|++.++|..+.+.|.++
T Consensus 29 ~~~ry~~~~p~----~~~-------~~~~TPL~~l~~l~~~~g~~i~~K~E~~~-p-tGSfKdRga~~~l~~a~~~g~~~ 95 (372)
T 1p5j_A 29 QMGRGSEFMMS----GEP-------LHVKTPIRDSMALSKMAGTSVYLKMDSAQ-P-SGSFKIRGIGHFCKRWAKQGCAH 95 (372)
T ss_dssp ---------------CCC-------SSCCCCEEEEHHHHHHHTSCEEEECGGGS-G-GGBTTHHHHHHHHHHHHHTTCCE
T ss_pred ccccHHHhccc----ccC-------CCCCCCceEcHhhHHHhCCEEEEEEcCCC-C-CCChHHHHHHHHHHHHHHcCCCE
Confidence 38999999996 121 34569999988888878899999999995 7 79999999999999998899999
Q ss_pred EEEeCCccchHHHHHHHHHHHhCCeEEEEeCCCCCccccchhHHHHHCC-eEEEECCCChHHHHHHHHHHHHHHhccCCC
Q 019910 144 LVTCGGCQSAHATAVAVSCAERGLKSHLLLRGEQPQILTGYNLISTIYG-KVTYVPRTHYAHRIEMLKSYANLVAGNNGD 222 (334)
Q Consensus 144 VVt~Gg~qsNh~~AvAaaaa~~Gl~~~ivv~~~~p~~~~gn~~~~~~~G-~V~~v~~~~y~~~~~~~~~~a~~~~~~~g~ 222 (334)
||++++ |||++|+|++|+++|++|+||||...+. .+..+++.|| +|+.++. .|++..+.++++
T Consensus 96 vv~aSs--GN~g~alA~aa~~~G~~~~iv~p~~~~~---~k~~~~~~~GA~V~~~~~-~~~~a~~~a~~l---------- 159 (372)
T 1p5j_A 96 FVCSSA--GNAGMAAAYAARQLGVPATIVVPGTTPA---LTIERLKNEGATCKVVGE-LLDEAFELAKAL---------- 159 (372)
T ss_dssp EEECCS--SHHHHHHHHHHHHHTCCEEEEECTTCCH---HHHHHHHHTTCEEEECCS-CHHHHHHHHHHH----------
T ss_pred EEEeCC--CHHHHHHHHHHHHcCCcEEEEECCCCCH---HHHHHHHhcCCEEEEECC-CHHHHHHHHHHH----------
Confidence 998875 9999999999999999999999998754 4778999999 9999986 577654433221
Q ss_pred ccchhhhhhhhHhhhhhhcccccchhhhhccccccCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhcCCCCCCEEEEcCC
Q 019910 223 VVWCNEIFEASLTAQKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVALLGVFRLLQYLSQDHLLGRKRAIKFVVDAG 302 (334)
Q Consensus 223 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~IpeGgs~p~a~~G~~~la~EI~eq~~~g~~~~D~Vvvp~G 302 (334)
....++.++++. ..||....|+.+++.||.+|+ + ..+|+||||+|
T Consensus 160 -------------------------------~~~~~~~~~v~~-~~n~~~~~G~~t~~~Ei~~ql--~-~~~d~vvvpvG 204 (372)
T 1p5j_A 160 -------------------------------AKNNPGWVYIPP-FDDPLIWEGHASIVKELKETL--W-EKPGAIALSVG 204 (372)
T ss_dssp -------------------------------HHHSTTEEECCS-SCCHHHHHHHTHHHHHHHHHC--S-SCCSEEEEECS
T ss_pred -------------------------------HHhcCCcEEeCC-CCCHHHHhhHHHHHHHHHHHc--C-CCCCEEEEecC
Confidence 111123344432 348999999999999999997 3 25899999999
Q ss_pred chhHHHHHHHHHHHcC-CCCeEEEEEeccCC
Q 019910 303 TGTTAVGLGLGAICLG-CVPLFNTLLVKLSR 332 (334)
Q Consensus 303 tGgt~aGl~~g~k~lg-~~~~VigV~~~gs~ 332 (334)
||||++|++.+++.++ +.++||||++.++.
T Consensus 205 ~GG~~~Gi~~~~k~~~~p~~~vigVe~~~~~ 235 (372)
T 1p5j_A 205 GGGLLCGVVQGLQECGWGDVPVIAMETFGAH 235 (372)
T ss_dssp SSHHHHHHHHHHHHTTCTTCCEEEEEETTSC
T ss_pred CchHHHHHHHHHHHhCCCCceEEEEecCCCh
Confidence 9999999999999998 88999999998864
No 10
>2egu_A Cysteine synthase; O-acetylserine sulfhydrase, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; 1.90A {Geobacillus kaustophilus}
Probab=100.00 E-value=6.3e-34 Score=270.83 Aligned_cols=193 Identities=15% Similarity=0.114 Sum_probs=147.4
Q ss_pred cccCCCCcCCCCCccccCCCCeEEEEeCCCCCCCChhHHHHHHHhhhHHHHhcCC----CEEEEeCCccchHHHHHHHHH
Q 019910 87 SFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIV----TDLVTCGGCQSAHATAVAVSC 162 (334)
Q Consensus 87 ~~~~~~Tp~l~~~~l~~~~g~~lyvKrDDl~~p~~gGnK~RkL~~lL~~a~~~g~----~~VVt~Gg~qsNh~~AvAaaa 162 (334)
....+-||++..+.+++..|.+||+|+|++ +| +||||+|++.+++..+.+.|. ++||+. ++|||++|+|++|
T Consensus 9 ~~~~~~TPL~~l~~l~~~~g~~i~~K~E~~-~p-tgSfK~R~a~~~l~~a~~~g~~~~g~~vv~a--ssGN~g~a~A~~a 84 (308)
T 2egu_A 9 TELIGDTPAVKLNRIVDEDSADVYLKLEFM-NP-GSSVKDRIALAMIEAAEKAGKLKPGDTIVEP--TSGNTGIGLAMVA 84 (308)
T ss_dssp GGGSSCCCEEECCSSSCTTSCEEEEEEGGG-ST-TSBTHHHHHHHHHHHHHHTTCCCTTCEEEEE--CCHHHHHHHHHHH
T ss_pred HHhcCCCCeEECCcccccCCCEEEEEeccc-CC-CCChHHHHHHHHHHHHHHcCCCCCCCEEEEe--CCCHHHHHHHHHH
Confidence 445566999988888888889999999999 58 699999999999999998887 788874 3699999999999
Q ss_pred HHhCCeEEEEeCCCCCccccchhHHHHHCC-eEEEECCC-ChHHHHHHHHHHHHHHhccCCCccchhhhhhhhHhhhhhh
Q 019910 163 AERGLKSHLLLRGEQPQILTGYNLISTIYG-KVTYVPRT-HYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASLTAQKSR 240 (334)
Q Consensus 163 a~~Gl~~~ivv~~~~p~~~~gn~~~~~~~G-~V~~v~~~-~y~~~~~~~~~~a~~~~~~~g~~~w~~~~~~~~~~~~~~~ 240 (334)
+++|++|++|||...|. .+..+++.|| +|+.++.. .|+++.+.++++
T Consensus 85 ~~~G~~~~iv~p~~~~~---~k~~~~~~~GA~v~~~~~~~~~~~~~~~a~~l---------------------------- 133 (308)
T 2egu_A 85 AAKGYKAVLVMPDTMSL---ERRNLLRAYGAELVLTPGAQGMRGAIAKAEEL---------------------------- 133 (308)
T ss_dssp HHHTCEEEEEEESCSCH---HHHHHHHHTTCEEEEECGGGHHHHHHHHHHHH----------------------------
T ss_pred HHcCCCEEEEECCCCCH---HHHHHHHHcCCEEEEECCCCCHHHHHHHHHHH----------------------------
Confidence 99999999999998764 3678899999 99999864 355443332211
Q ss_pred cccccchhhhhccccccCcEEEEcCCCcchhHH-HHHHHHHHHHHHhhhcCCCCCCEEEEcCCchhHHHHHHHHHHHcCC
Q 019910 241 ASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVAL-LGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGLGAICLGC 319 (334)
Q Consensus 241 ~~~~~~~~~~~~l~~~~~~~y~IpeGgs~p~a~-~G~~~la~EI~eq~~~g~~~~D~Vvvp~GtGgt~aGl~~g~k~lg~ 319 (334)
....+. +++.++.||.+. .||.+++.||.+|+ ++ .+|+||||+|||||++|++.+++.+++
T Consensus 134 -------------~~~~~~--~~~~~~~n~~~~~~g~~t~~~Ei~~q~--~~-~~d~vvvpvG~GG~~~Gi~~~~k~~~~ 195 (308)
T 2egu_A 134 -------------VREHGY--FMPQQFKNEANPEIHRLTTGKEIVEQM--GD-QLDAFVAGVGTGGTITGAGKVLREAYP 195 (308)
T ss_dssp -------------HHHHCC--BCC--------------CHHHHHHHHH--TT-CCCEEEEEGGGTHHHHHHHHHHHHHCT
T ss_pred -------------HHHCcC--CcCCcCCChhHHHHHHHHHHHHHHHHc--CC-CCCEEEEeeCCchhHHHHHHHHHHhCC
Confidence 111122 346677788765 68999999999998 32 489999999999999999999999999
Q ss_pred CCeEEEEEeccCC
Q 019910 320 VPLFNTLLVKLSR 332 (334)
Q Consensus 320 ~~~VigV~~~gs~ 332 (334)
.++||||++.+++
T Consensus 196 ~~~vigve~~~~~ 208 (308)
T 2egu_A 196 NIKIYAVEPADSP 208 (308)
T ss_dssp TCEEEEEEECC--
T ss_pred CCEEEEEEeCCCc
Confidence 9999999999885
No 11
>2q3b_A Cysteine synthase A; pyridoxal-5'-phosphate, sulphur metabolism, cysteine biosynthesis, transferase; HET: LLP; 1.80A {Mycobacterium tuberculosis} PDB: 2q3c_A* 2q3d_A* 3rr2_A
Probab=100.00 E-value=2.3e-33 Score=267.47 Aligned_cols=196 Identities=16% Similarity=0.133 Sum_probs=161.1
Q ss_pred ccccCCCCcCCCCCccccCCCCeEEEEeCCCCCCCChhHHHHHHHhhhHHHHhcCC----CEEEEeCCccchHHHHHHHH
Q 019910 86 ISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIV----TDLVTCGGCQSAHATAVAVS 161 (334)
Q Consensus 86 ~~~~~~~Tp~l~~~~l~~~~g~~lyvKrDDl~~p~~gGnK~RkL~~lL~~a~~~g~----~~VVt~Gg~qsNh~~AvAaa 161 (334)
+....+-||++..+.+++..|.+||+|+|++| | +||||+|++.+++..+.+.|. ++||+. ++|||++|+|++
T Consensus 10 i~~~~~~TPL~~~~~l~~~~g~~i~~K~E~~~-p-tgSfK~R~a~~~l~~a~~~g~~~~g~~vv~a--ssGN~g~alA~~ 85 (313)
T 2q3b_A 10 ITQLIGRTPLVRLRRVTDGAVADIVAKLEFFN-P-ANSVKDRIGVAMLQAAEQAGLIKPDTIILEP--TSGNTGIALAMV 85 (313)
T ss_dssp GGGGSCCCCEEECSSSCTTCCSEEEEEEGGGS-T-TSBTHHHHHHHHHHHHHHTTCCCTTCEEEEE--CSSHHHHHHHHH
T ss_pred HHHhcCCCceEECcccccccCcEEEEEehhcC-C-CCcHHHHHHHHHHHHHHHcCCCCCCCEEEEe--CCCHHHHHHHHH
Confidence 34455669999888888888899999999996 7 699999999999999998887 788874 369999999999
Q ss_pred HHHhCCeEEEEeCCCCCccccchhHHHHHCC-eEEEECCC-ChHHHHHHHHHHHHHHhccCCCccchhhhhhhhHhhhhh
Q 019910 162 CAERGLKSHLLLRGEQPQILTGYNLISTIYG-KVTYVPRT-HYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASLTAQKS 239 (334)
Q Consensus 162 aa~~Gl~~~ivv~~~~p~~~~gn~~~~~~~G-~V~~v~~~-~y~~~~~~~~~~a~~~~~~~g~~~w~~~~~~~~~~~~~~ 239 (334)
|+++|++|++|||...|. .+..+++.|| +|+.++.. .|+++.+.+++
T Consensus 86 a~~~G~~~~iv~p~~~~~---~k~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~---------------------------- 134 (313)
T 2q3b_A 86 CAARGYRCVLTMPETMSL---ERRMLLRAYGAELILTPGADGMSGAIAKAEE---------------------------- 134 (313)
T ss_dssp HHHHTCEEEEEEETTSCH---HHHHHHHHTTCEEEEECGGGHHHHHHHHHHH----------------------------
T ss_pred HHHcCCcEEEEECCCCCH---HHHHHHHHCCCEEEEeCCCCCHHHHHHHHHH----------------------------
Confidence 999999999999998764 3678899999 99999863 35544333221
Q ss_pred hcccccchhhhhccccccCcEEEEcCCCcchhHHHH-HHHHHHHHHHhhhcCCCCCCEEEEcCCchhHHHHHHHHHHHcC
Q 019910 240 RASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVALLG-VFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGLGAICLG 318 (334)
Q Consensus 240 ~~~~~~~~~~~~~l~~~~~~~y~IpeGgs~p~a~~G-~~~la~EI~eq~~~g~~~~D~Vvvp~GtGgt~aGl~~g~k~lg 318 (334)
+....+..| ++.++.||....| |.+++.||.+|+ ++ .+|+||||+|||||++|++.+++.++
T Consensus 135 -------------l~~~~~~~~-~~~~~~n~~~~~~~~~t~~~Ei~~q~--~~-~~d~vvvpvG~GG~~~Gi~~~~k~~~ 197 (313)
T 2q3b_A 135 -------------LAKTDQRYF-VPQQFENPANPAIHRVTTAEEVWRDT--DG-KVDIVVAGVGTGGTITGVAQVIKERK 197 (313)
T ss_dssp -------------HHHHCTTEE-CCCTTTCTHHHHHHHHTHHHHHHHHT--TT-CCCEEEEECSSSHHHHHHHHHHHHHC
T ss_pred -------------HHHhCCCEE-eCCCCCChhhHHHHHHHHHHHHHHHc--CC-CCCEEEEccCcchhHHHHHHHHHHhC
Confidence 111122333 4677789999866 999999999997 32 58999999999999999999999999
Q ss_pred CCCeEEEEEeccCCC
Q 019910 319 CVPLFNTLLVKLSRG 333 (334)
Q Consensus 319 ~~~~VigV~~~gs~~ 333 (334)
|.++||||++.+++.
T Consensus 198 ~~~~vi~ve~~~~~~ 212 (313)
T 2q3b_A 198 PSARFVAVEPAASPV 212 (313)
T ss_dssp TTCEEEEEEETTSCT
T ss_pred CCCEEEEEeeCCCcc
Confidence 999999999998864
No 12
>2pqm_A Cysteine synthase; OASS, PLP, lyase; HET: PLP; 1.86A {Entamoeba histolytica} PDB: 3bm5_A*
Probab=100.00 E-value=2.3e-33 Score=271.70 Aligned_cols=197 Identities=11% Similarity=0.035 Sum_probs=162.4
Q ss_pred cccccCCCCcCCCCCcccc----CCCCeEEEEeCCCCCCCChhHHHHHHHhhhHHHHhcCC----CEEEEeCCccchHHH
Q 019910 85 GISFLNNTCPFLGDDMIMR----DEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIV----TDLVTCGGCQSAHAT 156 (334)
Q Consensus 85 ~~~~~~~~Tp~l~~~~l~~----~~g~~lyvKrDDl~~p~~gGnK~RkL~~lL~~a~~~g~----~~VVt~Gg~qsNh~~ 156 (334)
.+....+-||+++.++|++ ..|.+||+|+|+++ | +||||+|++.+++..+.+.|. ++||++++ |||++
T Consensus 16 ~i~~~~g~TPL~~~~~l~~~~~~~~g~~v~~K~E~~~-p-tGSfKdR~a~~~l~~a~~~g~~~~g~~vv~aSs--GN~g~ 91 (343)
T 2pqm_A 16 NILETIGGTPLVELHGVTEHPRIKKGTRILVKLEYFN-P-MSSVKDRVGFNIVYQAIKDGRLKPGMEIIESTS--GNTGI 91 (343)
T ss_dssp SGGGGSSCCCEEECCGGGCSTTSCTTCEEEEEEGGGS-T-TSBTHHHHHHHHHHHHHHHTSSCTTCEEEEECS--SHHHH
T ss_pred HHHhhcCCCCeEECCccccccccccCcEEEEEeccCC-C-CCChHHHHHHHHHHHHHHcCCCCCCCEEEEECC--cHHHH
Confidence 3455667799999999887 77899999999995 7 699999999999999988887 78998865 99999
Q ss_pred HHHHHHHHhCCeEEEEeCCCCCccccchhHHHHHCC-eEEEECCC-ChHHHHHHHHHHHHHHhccCCCccchhhhhhhhH
Q 019910 157 AVAVSCAERGLKSHLLLRGEQPQILTGYNLISTIYG-KVTYVPRT-HYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASL 234 (334)
Q Consensus 157 AvAaaaa~~Gl~~~ivv~~~~p~~~~gn~~~~~~~G-~V~~v~~~-~y~~~~~~~~~~a~~~~~~~g~~~w~~~~~~~~~ 234 (334)
|+|++|+++|++|+||||...+. .+..+++.|| +|+.++.. .|+++.+.+++
T Consensus 92 alA~aa~~~G~~~~iv~p~~~~~---~k~~~~~~~GA~V~~~~~~~~~~~~~~~a~~----------------------- 145 (343)
T 2pqm_A 92 ALCQAGAVFGYRVNIAMPSTMSV---ERQMIMKAFGAELILTEGKKGMPGAIEEVNK----------------------- 145 (343)
T ss_dssp HHHHHHHHHTCCEEEEEETTSCH---HHHHHHHHTTCEEEEECGGGHHHHHHHHHHH-----------------------
T ss_pred HHHHHHHHcCCCEEEEECCCCCH---HHHHHHHHCCCEEEEECCCCCHHHHHHHHHH-----------------------
Confidence 99999999999999999998754 3678999999 99999853 35544333221
Q ss_pred hhhhhhcccccchhhhhccccccCcEEEEcCCCcchhHH-HHHHHHHHHHHHhhhcCCCCCCEEEEcCCchhHHHHHHHH
Q 019910 235 TAQKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVAL-LGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGLG 313 (334)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~l~~~~~~~y~IpeGgs~p~a~-~G~~~la~EI~eq~~~g~~~~D~Vvvp~GtGgt~aGl~~g 313 (334)
+....+.+|+++.+..||... .||.+++ ||.+|+ ++ .+|+||||+|||||++|++.+
T Consensus 146 ------------------~~~~~~~~y~~~~~~~n~~n~~~g~~t~~-Ei~~q~--~~-~~d~vvvpvG~GG~~~Gi~~~ 203 (343)
T 2pqm_A 146 ------------------MIKENPGKYFVANQFGNPDNTAAHHYTAN-EIWEDT--DG-EVDIVVSAVGTSGTVIGVAEK 203 (343)
T ss_dssp ------------------HHHHSTTTEEECCTTTCHHHHHHHHHHHH-HHHHHT--TT-CEEEEEEECSSSHHHHHHHHH
T ss_pred ------------------HHHhCCCcEEECCCCCChhHHHHHHHHHH-HHHHHc--CC-CCCEEEEecCCchhHHHHHHH
Confidence 111233454566777888865 6799999 999998 32 589999999999999999999
Q ss_pred HHHcCCCCeEEEEEeccCCC
Q 019910 314 AICLGCVPLFNTLLVKLSRG 333 (334)
Q Consensus 314 ~k~lg~~~~VigV~~~gs~~ 333 (334)
++.++|.++||||++.+++.
T Consensus 204 ~k~~~p~~~vigVe~~~~~~ 223 (343)
T 2pqm_A 204 LKEKKKGIKIIAVEPEESAV 223 (343)
T ss_dssp HHHHCTTCEEEEEEEGGGCT
T ss_pred HHHcCCCCEEEEEecCCCcc
Confidence 99999999999999998853
No 13
>4aec_A Cysteine synthase, mitochondrial; lyase, cysteine synthesis, assimilatory sulfate reduction, S plant inorganic sulfur uptake; HET: PLP; 2.40A {Arabidopsis thaliana}
Probab=100.00 E-value=1.8e-33 Score=280.61 Aligned_cols=197 Identities=14% Similarity=0.070 Sum_probs=163.7
Q ss_pred CcccccCCCCcCCCCCccccCCCCeEEEEeCCCCCCCChhHHHHHHHhhhHHHHhcCC-----CEEEEeCCccchHHHHH
Q 019910 84 GGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIV-----TDLVTCGGCQSAHATAV 158 (334)
Q Consensus 84 ~~~~~~~~~Tp~l~~~~l~~~~g~~lyvKrDDl~~p~~gGnK~RkL~~lL~~a~~~g~-----~~VVt~Gg~qsNh~~Av 158 (334)
..+....+-||++..+++++..|.+||+|+||+| | +||||+|++.+++.+|++.|. ++||++++ |||++|+
T Consensus 115 ~~i~~~ig~TPLv~l~~Ls~~~g~~I~lK~E~ln-p-tGSfKdRgA~~~i~~A~~~G~l~~g~~~VV~aSs--GNhG~Al 190 (430)
T 4aec_A 115 DNVSQLIGKTPMVYLNSIAKGCVANIAAKLEIME-P-CCSVKDRIGYSMVTDAEQKGFISPGKSVLVEPTS--GNTGIGL 190 (430)
T ss_dssp SSGGGGSSCCCEEECCGGGTTCSSEEEEEEGGGS-T-TSBTTHHHHHHHHHHHHHTTSCCTTTCEEEEECS--SHHHHHH
T ss_pred hhhhccCCCCCeEEChhhhhhcCCeEEEEECCCC-C-CCCHHHHHHHHHHHHHHHcCCCCCCCcEEEEECC--CHHHHHH
Confidence 4566677889999999999988999999999996 6 589999999999999999987 78898764 9999999
Q ss_pred HHHHHHhCCeEEEEeCCCCCccccchhHHHHHCC-eEEEECCC-ChHHHHHHHHHHHHHHhccCCCccchhhhhhhhHhh
Q 019910 159 AVSCAERGLKSHLLLRGEQPQILTGYNLISTIYG-KVTYVPRT-HYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASLTA 236 (334)
Q Consensus 159 Aaaaa~~Gl~~~ivv~~~~p~~~~gn~~~~~~~G-~V~~v~~~-~y~~~~~~~~~~a~~~~~~~g~~~w~~~~~~~~~~~ 236 (334)
|++|+++|++|+||||...+. .+...++.|| +|+.++.+ .|+++.+.+++
T Consensus 191 A~aAa~~Gl~~~IvmP~~~s~---~k~~~~r~~GAeVv~v~~~~~~~~a~~~a~e------------------------- 242 (430)
T 4aec_A 191 AFIAASRGYRLILTMPASMSM---ERRVLLKAFGAELVLTDPAKGMTGAVQKAEE------------------------- 242 (430)
T ss_dssp HHHHHHHTCEEEEEEETTSCH---HHHHHHHHTTCEEEEECGGGHHHHHHHHHHH-------------------------
T ss_pred HHHHHHhCCEEEEEEcCCCCH---HHHHHHHHCCCEEEEECCCCChHHHHHHHHH-------------------------
Confidence 999999999999999998765 4678999999 99999853 35543332211
Q ss_pred hhhhcccccchhhhhccccccCcEEEEcCCCcchhH-HHHHHHHHHHHHHhhhcCCCCCCEEEEcCCchhHHHHHHHHHH
Q 019910 237 QKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVA-LLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGLGAI 315 (334)
Q Consensus 237 ~~~~~~~~~~~~~~~~l~~~~~~~y~IpeGgs~p~a-~~G~~~la~EI~eq~~~g~~~~D~Vvvp~GtGgt~aGl~~g~k 315 (334)
+..+.+..|+++ +..||.. ..||.+++.||.+|+ + ..+|+||+|+|||||++|++.+++
T Consensus 243 ----------------l~~~~~~~~~i~-~~~np~~~~aG~~T~a~EI~eQl--~-~~~D~vVvpvG~GGtlaGi~~~lk 302 (430)
T 4aec_A 243 ----------------ILKNTPDAYMLQ-QFDNPANPKIHYETTGPEIWDDT--K-GKVDIFVAGIGTGGTITGVGRFIK 302 (430)
T ss_dssp ----------------HHHHSTTEEECC-TTTCTHHHHHHHHTHHHHHHHHT--T-SCEEEEEEECSSSHHHHHHHHHHH
T ss_pred ----------------HHHhcCCcEEec-CCCCccHHHHHHHHHHHHHHHHc--C-CCCCEEEEeCCccHHHHHHHHHHH
Confidence 122233556564 4567877 689999999999997 3 259999999999999999999999
Q ss_pred HcCCCCeEEEEEeccCC
Q 019910 316 CLGCVPLFNTLLVKLSR 332 (334)
Q Consensus 316 ~lg~~~~VigV~~~gs~ 332 (334)
.+++.++||||++.++.
T Consensus 303 ~~~p~~kVigVep~~s~ 319 (430)
T 4aec_A 303 EKNPKTQVIGVEPTESD 319 (430)
T ss_dssp HHCTTSEEEEEEEGGGC
T ss_pred HhCCCCEEEEEEeCCCc
Confidence 99999999999999875
No 14
>1ve1_A O-acetylserine sulfhydrylase; PLP, transferase, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.45A {Thermus thermophilus} SCOP: c.79.1.1 PDB: 2eco_A* 2ecq_A* 2efy_A*
Probab=100.00 E-value=1.9e-33 Score=267.06 Aligned_cols=192 Identities=14% Similarity=0.063 Sum_probs=159.1
Q ss_pred cCCCCcCCCCCccccCCCCeEEEEeCCCCCCCChhHHHHHHHhhhHHHHhcCC----C--EEEEeCCccchHHHHHHHHH
Q 019910 89 LNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIV----T--DLVTCGGCQSAHATAVAVSC 162 (334)
Q Consensus 89 ~~~~Tp~l~~~~l~~~~g~~lyvKrDDl~~p~~gGnK~RkL~~lL~~a~~~g~----~--~VVt~Gg~qsNh~~AvAaaa 162 (334)
..+-||++..+.+++..|.+||+|+|+++ | +||||+|++.+++..+.+.|. + +||++ ++|||++|+|++|
T Consensus 6 ~~~~TPL~~~~~l~~~~g~~v~~K~E~~~-p-tGSfK~R~a~~~l~~a~~~g~~~~g~~~~vv~a--ssGN~g~a~A~~a 81 (304)
T 1ve1_A 6 AIGKTPVVRLAKVVEPDMAEVWVKLEGLN-P-GGSIKDRPAWYMIKDAEERGILRPGSGQVIVEP--TSGNTGIGLAMIA 81 (304)
T ss_dssp GCCCCCEEECCSSSCTTSCEEEEEEGGGS-T-TSBTTHHHHHHHHHHHHHTTSCCTTSCCEEEES--CCSHHHHHHHHHH
T ss_pred hcCCCCcEECcccccccCCEEEEEecccC-C-CCcHHHHHHHHHHHHHHHcCCCCCCCccEEEEe--CCcHHHHHHHHHH
Confidence 34568999888888888899999999995 7 689999999999999998887 6 88874 3699999999999
Q ss_pred HHhCCeEEEEeCCCCCccccchhHHHHHCC-eEEEECCCC-hHHHHHHHHHHHHHHhccCCCccchhhhhhhhHhhhhhh
Q 019910 163 AERGLKSHLLLRGEQPQILTGYNLISTIYG-KVTYVPRTH-YAHRIEMLKSYANLVAGNNGDVVWCNEIFEASLTAQKSR 240 (334)
Q Consensus 163 a~~Gl~~~ivv~~~~p~~~~gn~~~~~~~G-~V~~v~~~~-y~~~~~~~~~~a~~~~~~~g~~~w~~~~~~~~~~~~~~~ 240 (334)
+++|++|++|||...+. .+..+++.|| +|+.++... |+++.+.+++
T Consensus 82 ~~~G~~~~i~~p~~~~~---~k~~~~~~~Ga~V~~~~~~~~~~~~~~~a~~----------------------------- 129 (304)
T 1ve1_A 82 ASRGYRLILTMPAQMSE---ERKRVLKAFGAELVLTDPERRMLAAREEALR----------------------------- 129 (304)
T ss_dssp HHHTCEEEEEEETTCCH---HHHHHHHHTTCEEEEECTTTHHHHHHHHHHH-----------------------------
T ss_pred HHcCCcEEEEeCCCCCH---HHHHHHHHcCCEEEEECCCCCHHHHHHHHHH-----------------------------
Confidence 99999999999998754 4778999999 999998642 6654433221
Q ss_pred cccccchhhhhccccccCcEEEEcCCCcchhHHHH-HHHHHHHHHHhhhcCCCCCCEEEEcCCchhHHHHHHHHHHHcCC
Q 019910 241 ASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVALLG-VFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGLGAICLGC 319 (334)
Q Consensus 241 ~~~~~~~~~~~~l~~~~~~~y~IpeGgs~p~a~~G-~~~la~EI~eq~~~g~~~~D~Vvvp~GtGgt~aGl~~g~k~lg~ 319 (334)
+.+. +..| ++.+..||....| |.+++.||.+|+ ++ .+|+||+|+|||||++|++.+++.++|
T Consensus 130 ------------l~~~-~~~~-~~~~~~n~~~~~g~~~t~~~Ei~~q~--~~-~~d~vvvpvG~GG~~~Gi~~~~k~~~~ 192 (304)
T 1ve1_A 130 ------------LKEE-LGAF-MPDQFKNPANVRAHYETTGPELYEAL--EG-RIDAFVYGSGTGGTITGVGRYLKERIP 192 (304)
T ss_dssp ------------HHHH-HTCB-CCCTTTCHHHHHHHHHTHHHHHHHHT--TT-CCSEEEEECSSSHHHHHHHHHHHTTCT
T ss_pred ------------HHhc-CCCE-eCCCCCChhHHHHHHHHHHHHHHHHc--CC-CCCEEEEecCCchhHHHHHHHHHHhCC
Confidence 1111 1233 3456789999999 699999999998 32 589999999999999999999999999
Q ss_pred CCeEEEEEeccCCC
Q 019910 320 VPLFNTLLVKLSRG 333 (334)
Q Consensus 320 ~~~VigV~~~gs~~ 333 (334)
.++||||++.+++.
T Consensus 193 ~~~vi~ve~~~~~~ 206 (304)
T 1ve1_A 193 HVKVIAVEPARSNV 206 (304)
T ss_dssp TCEEEEEEEGGGCT
T ss_pred CCEEEEEecCCCcc
Confidence 99999999998853
No 15
>3l6b_A Serine racemase; pyridoxal phosphate, PLP, isomerase; HET: PLP; 1.50A {Homo sapiens} SCOP: c.79.1.0 PDB: 3l6r_A* 3hmk_A* 3l6c_A*
Probab=100.00 E-value=5.3e-34 Score=276.59 Aligned_cols=187 Identities=13% Similarity=0.146 Sum_probs=155.1
Q ss_pred CCCcCCCCCccccCCCCeEEEEeCCCCCCCChhHHHHHHHhhhHHHHhc----CCCEEEEeCCccchHHHHHHHHHHHhC
Q 019910 91 NTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDH----IVTDLVTCGGCQSAHATAVAVSCAERG 166 (334)
Q Consensus 91 ~~Tp~l~~~~l~~~~g~~lyvKrDDl~~p~~gGnK~RkL~~lL~~a~~~----g~~~VVt~Gg~qsNh~~AvAaaaa~~G 166 (334)
+-||++..++|++..|.+||+|+||+| | +||||+|++.+++..+.+. +.++||+++ +|||++|+|++|+++|
T Consensus 24 ~~TPL~~~~~l~~~~g~~i~~K~E~~~-p-tGSfK~Rga~~~i~~a~~~g~~~~~~~vv~~S--sGNhg~a~A~aa~~~G 99 (346)
T 3l6b_A 24 HLTPVLTSSILNQLTGRNLFFKCELFQ-K-TGSFKIRGALNAVRSLVPDALERKPKAVVTHS--SGNHGQALTYAAKLEG 99 (346)
T ss_dssp CCCCEECCHHHHHHHTSEEEEEEGGGS-G-GGBTHHHHHHHHHHTTC-----CCCSCEEEEC--SSHHHHHHHHHHHHTT
T ss_pred CCCCeEEchhhHHHhCCeEEEEeCCCC-C-CCCcHHHHHHHHHHHHHHhccccCCCEEEEeC--CCHHHHHHHHHHHHhC
Confidence 347888887788877899999999996 6 7999999999999988764 778899886 4999999999999999
Q ss_pred CeEEEEeCCCCCccccchhHHHHHCC-eEEEECCCChHHHHHHHHHHHHHHhccCCCccchhhhhhhhHhhhhhhccccc
Q 019910 167 LKSHLLLRGEQPQILTGYNLISTIYG-KVTYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASLTAQKSRASCLG 245 (334)
Q Consensus 167 l~~~ivv~~~~p~~~~gn~~~~~~~G-~V~~v~~~~y~~~~~~~~~~a~~~~~~~g~~~w~~~~~~~~~~~~~~~~~~~~ 245 (334)
++|++|||...|. .+..+++.|| +|+.++. .|+++.+.++++
T Consensus 100 ~~~~iv~p~~~~~---~k~~~~~~~GA~V~~v~~-~~~~~~~~a~~l--------------------------------- 142 (346)
T 3l6b_A 100 IPAYIVVPQTAPD---CKKLAIQAYGASIVYCEP-SDESRENVAKRV--------------------------------- 142 (346)
T ss_dssp CCEEEEEETTSCH---HHHHHHHHTTCEEEEECS-SHHHHHHHHHHH---------------------------------
T ss_pred CCEEEEECCCCCH---HHHHHHHHCCCEEEEECC-CHHHHHHHHHHH---------------------------------
Confidence 9999999998765 3678999999 9999986 476554433221
Q ss_pred chhhhhccccccCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhcCCCCCCEEEEcCCchhHHHHHHHHHHHcCCCCeEEE
Q 019910 246 QMDAHKGIDNCRKKVLIVNEGAGDAVALLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGLGAICLGCVPLFNT 325 (334)
Q Consensus 246 ~~~~~~~l~~~~~~~y~IpeGgs~p~a~~G~~~la~EI~eq~~~g~~~~D~Vvvp~GtGgt~aGl~~g~k~lg~~~~Vig 325 (334)
....+..|+.|.+ ||....||.+++.||.+|+ + .+|+||+|+|||||++|++.+++.++|+++|||
T Consensus 143 --------~~~~~~~~i~~~~--np~~~~g~~t~~~Ei~~q~--~--~~d~vvv~vG~GG~~aGi~~~~k~~~p~~~vig 208 (346)
T 3l6b_A 143 --------TEETEGIMVHPNQ--EPAVIAGQGTIALEVLNQV--P--LVDALVVPVGGGGMLAGIAITVKALKPSVKVYA 208 (346)
T ss_dssp --------HHHHTCEECCSSS--CHHHHHHHHHHHHHHHHHS--T--TCCEEEEECSSSHHHHHHHHHHHHHCTTSEEEE
T ss_pred --------HHhcCCEEECCCC--ChHHHHHHHHHHHHHHHhC--C--CCCEEEEecCccHHHHHHHHHHHHhCCCCEEEE
Confidence 1122345554543 8889999999999999997 2 589999999999999999999999999999999
Q ss_pred EEeccCC
Q 019910 326 LLVKLSR 332 (334)
Q Consensus 326 V~~~gs~ 332 (334)
|++.++.
T Consensus 209 Ve~~~~~ 215 (346)
T 3l6b_A 209 AEPSNAD 215 (346)
T ss_dssp EEEGGGC
T ss_pred EecCCCH
Confidence 9998874
No 16
>3dwg_A Cysteine synthase B; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} SCOP: c.79.1.0 PDB: 3fgp_A* 3dki_A* 3dwi_A*
Probab=100.00 E-value=2.4e-33 Score=269.63 Aligned_cols=190 Identities=12% Similarity=0.102 Sum_probs=157.0
Q ss_pred CCCCcCCCCCccccC-------CCCeEEEEeCCCCCCCChhHHHHHHHhhhHHHHhcCC----CEEEEeCCccchHHHHH
Q 019910 90 NNTCPFLGDDMIMRD-------EDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIV----TDLVTCGGCQSAHATAV 158 (334)
Q Consensus 90 ~~~Tp~l~~~~l~~~-------~g~~lyvKrDDl~~p~~gGnK~RkL~~lL~~a~~~g~----~~VVt~Gg~qsNh~~Av 158 (334)
-+-||++..++|++. .|.+||+|+|++| | +||||+|++.+++..|.+.|. ++||+++ +|||++|+
T Consensus 13 ig~TPL~~~~~l~~~~~~~~~~~g~~v~~K~E~~~-p-tGSfK~R~a~~~l~~a~~~g~l~~~~~vv~aS--sGN~g~al 88 (325)
T 3dwg_A 13 LGNTPLVGLQRLSPRWDDGRDGPHVRLWAKLEDRN-P-TGSIKDRPAVRMIEQAEADGLLRPGATILEPT--SGNTGISL 88 (325)
T ss_dssp CSCCCEEECTTTSSBSSCBTTBCCEEEEEEETTSS-T-TSBTTHHHHHHHHHHHHHTTCCCTTCEEEEEC--SSHHHHHH
T ss_pred cCCCCcEEccccchhhcccccCCCcEEEEEECCCC-C-CCChHHHHHHHHHHHHHHcCCCCCCCEEEEeC--CcHHHHHH
Confidence 345888888888877 6889999999995 6 589999999999999999998 8999875 49999999
Q ss_pred HHHHHHhCCeEEEEeCCCCCccccchhHHHHHCC-eEEEECCC-ChHHHHHHHHHHHHHHhccCCCccchhhhhhhhHhh
Q 019910 159 AVSCAERGLKSHLLLRGEQPQILTGYNLISTIYG-KVTYVPRT-HYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASLTA 236 (334)
Q Consensus 159 Aaaaa~~Gl~~~ivv~~~~p~~~~gn~~~~~~~G-~V~~v~~~-~y~~~~~~~~~~a~~~~~~~g~~~w~~~~~~~~~~~ 236 (334)
|++|+++|++|+||||...|. .+..+++.|| +|+.++.. .|+++.+.+++
T Consensus 89 A~aa~~~G~~~~iv~p~~~~~---~k~~~~~~~GA~V~~~~~~~~~~~~~~~a~~------------------------- 140 (325)
T 3dwg_A 89 AMAARLKGYRLICVMPENTSV---ERRQLLELYGAQIIFSAAEGGSNTAVATAKE------------------------- 140 (325)
T ss_dssp HHHHHHHTCEEEEEEESSSCH---HHHHHHHHHTCEEEEECSTTTHHHHHHHHHH-------------------------
T ss_pred HHHHHHcCCcEEEEECCCCCH---HHHHHHHHCCCEEEEECCCCCHHHHHHHHHH-------------------------
Confidence 999999999999999998765 3677899999 99999863 36654443321
Q ss_pred hhhhcccccchhhhhccccccCcEEEEcCCCcchhHH-HHHHHHHHHHHHhhhcCCCCCCEEEEcCCchhHHHHHHHHHH
Q 019910 237 QKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVAL-LGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGLGAI 315 (334)
Q Consensus 237 ~~~~~~~~~~~~~~~~l~~~~~~~y~IpeGgs~p~a~-~G~~~la~EI~eq~~~g~~~~D~Vvvp~GtGgt~aGl~~g~k 315 (334)
+....++.|++ .+..||... .||.+++.||.+|+ + .+|+||+|+|||||++|++.+++
T Consensus 141 ----------------l~~~~~~~~~~-~~~~np~~~~~g~~t~~~Ei~~q~--~--~~d~vv~pvG~GG~~aGi~~~~k 199 (325)
T 3dwg_A 141 ----------------LAATNPSWVML-YQYGNPANTDSHYCGTGPELLADL--P--EITHFVAGLGTTGTLMGTGRFLR 199 (325)
T ss_dssp ----------------HHHHCTTSBCC-CTTTCHHHHHHHHHTHHHHHHHHC--T--TCCEEEEECSSSHHHHHHHHHHH
T ss_pred ----------------HHHhCCCeEeC-CCCCCHHHHHHHHHHHHHHHHHhc--C--CCCEEEEecCchHHHHHHHHHHH
Confidence 11122223433 456788887 59999999999997 3 39999999999999999999999
Q ss_pred HcCCCCeEEEEEeccCC
Q 019910 316 CLGCVPLFNTLLVKLSR 332 (334)
Q Consensus 316 ~lg~~~~VigV~~~gs~ 332 (334)
.++|.++||||++.++.
T Consensus 200 ~~~p~~~vigVe~~~~~ 216 (325)
T 3dwg_A 200 EHVANVKIVAAEPRYGE 216 (325)
T ss_dssp HHSTTCEEEEEEEECCG
T ss_pred HhCCCCEEEEEeeCCCc
Confidence 99999999999999875
No 17
>3tbh_A O-acetyl serine sulfhydrylase; cysteine synthase, type II PLP dependent enzyme, serine ACET transferase; HET: LLP; 1.68A {Leishmania donovani} PDB: 3spx_A* 3t4p_A* 4air_A*
Probab=100.00 E-value=5.7e-33 Score=268.12 Aligned_cols=195 Identities=16% Similarity=0.122 Sum_probs=156.9
Q ss_pred ccccCCCCcCCCCCccccCCCCeEEEEeCCCCCCCChhHHHHHHHhhhHHHHhcCC----CEE-EEeCCccchHHHHHHH
Q 019910 86 ISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIV----TDL-VTCGGCQSAHATAVAV 160 (334)
Q Consensus 86 ~~~~~~~Tp~l~~~~l~~~~g~~lyvKrDDl~~p~~gGnK~RkL~~lL~~a~~~g~----~~V-Vt~Gg~qsNh~~AvAa 160 (334)
+....+-||++..+.+ +..|.+||+|+|++| | +||||+|++.+++..|.++|. ++| |+++ +|||++|+|+
T Consensus 15 i~~~ig~TPL~~l~~l-~~~g~~i~~K~E~~~-p-tGSfK~R~a~~~i~~a~~~g~l~~g~~vvv~aS--sGN~g~alA~ 89 (334)
T 3tbh_A 15 IDQLIGQTPALYLNKL-NNTKAKVVLKMECEN-P-MASVKDRLGFAIYDKAEKEGKLIPGKSIVVESS--SGNTGVSLAH 89 (334)
T ss_dssp GGGGSSCCCEEECCTT-CCSSSEEEEEEGGGS-T-TSBTHHHHHHHHHHHHHHTTSCCTTTCEEEEEC--SSHHHHHHHH
T ss_pred HHHhcCCCCeEECCcc-cCCCCEEEEEeCCCC-C-ccCcHHHHHHHHHHHHHHcCCCCCCCeEEEEeC--CCHHHHHHHH
Confidence 3445566999998888 777899999999996 6 589999999999999999987 774 8775 4999999999
Q ss_pred HHHHhCCeEEEEeCCCCCccccchhHHHHHCC-eEEEECCC-ChHHHHHHHHHHHHHHhccCCCccchhhhhhhhHhhhh
Q 019910 161 SCAERGLKSHLLLRGEQPQILTGYNLISTIYG-KVTYVPRT-HYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASLTAQK 238 (334)
Q Consensus 161 aaa~~Gl~~~ivv~~~~p~~~~gn~~~~~~~G-~V~~v~~~-~y~~~~~~~~~~a~~~~~~~g~~~w~~~~~~~~~~~~~ 238 (334)
+|+++|++|+||||...|. .+..+++.|| +|+.++.. .|+++.+.+++
T Consensus 90 aa~~~G~~~~iv~p~~~~~---~k~~~~~~~GA~V~~~~~~~~~~~~~~~a~~--------------------------- 139 (334)
T 3tbh_A 90 LGAIRGYKVIITMPESMSL---ERRCLLRIFGAEVILTPAALGMKGAVAMAKK--------------------------- 139 (334)
T ss_dssp HHHHHTCEEEEEEETTSCH---HHHHHHHHTTCEEEEECGGGHHHHHHHHHHH---------------------------
T ss_pred HHHHhCCCEEEEECCCCCH---HHHHHHHHCCCEEEEECCCCCchHHHHHHHH---------------------------
Confidence 9999999999999998764 3678899999 99999853 35543332221
Q ss_pred hhcccccchhhhhccccccCcEEEEcCCCcchh-HHHHHHHHHHHHHHhhhcCCCCCCEEEEcCCchhHHHHHHHHHHHc
Q 019910 239 SRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAV-ALLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGLGAICL 317 (334)
Q Consensus 239 ~~~~~~~~~~~~~~l~~~~~~~y~IpeGgs~p~-a~~G~~~la~EI~eq~~~g~~~~D~Vvvp~GtGgt~aGl~~g~k~l 317 (334)
+....++.|++ .+..||. ...||.+++.||.+|+ ++ .+|+||+|+|||||++|++.+++.+
T Consensus 140 --------------~~~~~~~~~~i-~~~~np~n~~~g~~t~~~Ei~~q~--~~-~~d~vv~pvG~GG~~aGi~~~~k~~ 201 (334)
T 3tbh_A 140 --------------IVAANPNAVLA-DQFATKYNALIHEETTGPEIWEQT--NH-NVDCFIAGVGTGGTLTGVARALKKM 201 (334)
T ss_dssp --------------HHHHCTTEEEC-CTTTCHHHHHHHHHTHHHHHHHHT--TS-CCSEEEEECSSSHHHHHHHHHHHHT
T ss_pred --------------HHHhCCCEEEC-CccCChhHHHHHHHHHHHHHHHHh--CC-CCCEEEeccCCcHhHHHHHHHHHHh
Confidence 11122244555 3456777 3457889999999997 32 6999999999999999999999999
Q ss_pred CCCCeEEEEEeccCCC
Q 019910 318 GCVPLFNTLLVKLSRG 333 (334)
Q Consensus 318 g~~~~VigV~~~gs~~ 333 (334)
+|.++|+||++.+++.
T Consensus 202 ~p~~~vigVe~~~~~~ 217 (334)
T 3tbh_A 202 GSHARIVAVEPTESPV 217 (334)
T ss_dssp TCCCEEEEEEETTSCT
T ss_pred CCCCEEEEEeeCCchH
Confidence 9999999999998864
No 18
>2rkb_A Serine dehydratase-like; PLP bound enzyme, enzyme found in human cells, lyase, pyridoxal phosphate; HET: PLP; 2.80A {Homo sapiens}
Probab=100.00 E-value=1e-33 Score=270.44 Aligned_cols=188 Identities=13% Similarity=0.089 Sum_probs=157.0
Q ss_pred CCCcCCCCCccccCCCCeEEEEeCCCCCCCChhHHHHHHHhhhHHHHhcCCCEEEEeCCccchHHHHHHHHHHHhCCeEE
Q 019910 91 NTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIVTDLVTCGGCQSAHATAVAVSCAERGLKSH 170 (334)
Q Consensus 91 ~~Tp~l~~~~l~~~~g~~lyvKrDDl~~p~~gGnK~RkL~~lL~~a~~~g~~~VVt~Gg~qsNh~~AvAaaaa~~Gl~~~ 170 (334)
.-||++..+.|++..|.+||+|+|+++ | +||||+|++.+++..+.++|.++||++++ |||++|+|++|+++|++|+
T Consensus 6 ~~TPL~~~~~l~~~~g~~v~~K~E~~~-p-tgS~K~R~a~~~l~~a~~~g~~~vv~~ss--GN~g~alA~~a~~~G~~~~ 81 (318)
T 2rkb_A 6 VVTPLLESWALSQVAGMPVFLKCENVQ-P-SGSFKIRGIGHFCQEMAKKGCRHLVCSSG--GNAGIAAAYAARKLGIPAT 81 (318)
T ss_dssp CCCCEEEEHHHHHHHTSCEEEEEGGGS-T-TSBTTHHHHHHHHHHHHHTTCCEEEECCC--SHHHHHHHHHHHHHTCCEE
T ss_pred ccCCceehHhhHHHhCCeEEEEecCCC-C-CCCHHHHHHHHHHHHHHHcCCCEEEEECC--chHHHHHHHHHHHcCCCEE
Confidence 348888887787777889999999995 7 59999999999999999999999998865 9999999999999999999
Q ss_pred EEeCCCCCccccchhHHHHHCC-eEEEECCCChHHHHHHHHHHHHHHhccCCCccchhhhhhhhHhhhhhhcccccchhh
Q 019910 171 LLLRGEQPQILTGYNLISTIYG-KVTYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASLTAQKSRASCLGQMDA 249 (334)
Q Consensus 171 ivv~~~~p~~~~gn~~~~~~~G-~V~~v~~~~y~~~~~~~~~~a~~~~~~~g~~~w~~~~~~~~~~~~~~~~~~~~~~~~ 249 (334)
+|||...+.. +...++.|| +|+.++. .|++..+.+++
T Consensus 82 i~~p~~~~~~---k~~~~~~~Ga~V~~~~~-~~~~~~~~a~~-------------------------------------- 119 (318)
T 2rkb_A 82 IVLPESTSLQ---VVQRLQGEGAEVQLTGK-VWDEANLRAQE-------------------------------------- 119 (318)
T ss_dssp EEECTTCCHH---HHHHHHHTTCEEEECCS-SHHHHHHHHHH--------------------------------------
T ss_pred EEECCCCcHH---HHHHHHhcCCEEEEECC-CHHHHHHHHHH--------------------------------------
Confidence 9999987653 667899999 9999985 57765443322
Q ss_pred hhccccccCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhcCCCCCCEEEEcCCchhHHHHHHHHHHHcC-CCCeEEEEEe
Q 019910 250 HKGIDNCRKKVLIVNEGAGDAVALLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGLGAICLG-CVPLFNTLLV 328 (334)
Q Consensus 250 ~~~l~~~~~~~y~IpeGgs~p~a~~G~~~la~EI~eq~~~g~~~~D~Vvvp~GtGgt~aGl~~g~k~lg-~~~~VigV~~ 328 (334)
+....+..|+.| ..||....|+.+++.||.+|+ + ..+|+||+|+|||||++|++.+++.++ +.++|+||++
T Consensus 120 ---~~~~~~~~~~~~--~~n~~~~~g~~t~~~Ei~~q~--~-~~~d~vvvpvG~GG~~~Gi~~~~k~~~~~~~~vi~ve~ 191 (318)
T 2rkb_A 120 ---LAKRDGWENVPP--FDHPLIWKGHASLVQELKAVL--R-TPPGALVLAVGGGGLLAGVVAGLLEVGWQHVPIIAMET 191 (318)
T ss_dssp ---HHHSTTEEECCS--SCSHHHHHHHHHHHHHHHHHS--S-SCCSEEEEECSSSHHHHHHHHHHHHHTCTTSCEEEEEE
T ss_pred ---HHHhcCCEEeCC--CCChhhccchhHHHHHHHHhc--C-CCCCEEEEeeCCCcHHHHHHHHHHHhCCCCCEEEEEec
Confidence 111222344333 368999999999999999997 3 258999999999999999999999997 7899999999
Q ss_pred ccCC
Q 019910 329 KLSR 332 (334)
Q Consensus 329 ~gs~ 332 (334)
.++.
T Consensus 192 ~~~~ 195 (318)
T 2rkb_A 192 HGAH 195 (318)
T ss_dssp TTBC
T ss_pred CCCh
Confidence 8874
No 19
>2v03_A Cysteine synthase B; pyridoxal phosphate, cysteine biosynthesis, transferase, ENZ kinetics, enzymatic sythesis of novel compounds; HET: LLP CIT; 1.33A {Escherichia coli} PDB: 2bhs_A* 2bht_A* 2jc3_A*
Probab=100.00 E-value=8.2e-33 Score=263.02 Aligned_cols=194 Identities=15% Similarity=0.101 Sum_probs=158.7
Q ss_pred cccCCCCcCCCCCccccCCCCeEEEEeCCCCCCCChhHHHHHHHhhhHHHHhcCC----CEEEEeCCccchHHHHHHHHH
Q 019910 87 SFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIV----TDLVTCGGCQSAHATAVAVSC 162 (334)
Q Consensus 87 ~~~~~~Tp~l~~~~l~~~~g~~lyvKrDDl~~p~~gGnK~RkL~~lL~~a~~~g~----~~VVt~Gg~qsNh~~AvAaaa 162 (334)
....+-||++..+.|++..|.+||+|+|++| | +||||+|++.+++..+.+.|. ++||+++ +|||++|+|++|
T Consensus 5 ~~~~~~TPL~~~~~l~~~~g~~v~~K~E~~~-p-tGSfK~R~a~~~i~~a~~~g~~~~g~~vv~~s--sGN~g~a~A~~a 80 (303)
T 2v03_A 5 EQTIGNTPLVKLQRMGPDNGSEVWLKLEGNN-P-AGSVKDRAALSMIVEAEKRGEIKPGDVLIEAT--SGNTGIALAMIA 80 (303)
T ss_dssp GGGSSCCCEEECSSSSCSSSCEEEEEEGGGS-T-TSBTHHHHHHHHHHHHHHTTCCCTTCEEEEEC--SSHHHHHHHHHH
T ss_pred HhhcCCCCcEECcccccccCCEEEEEeccCC-C-CCCcHHHHHHHHHHHHHHcCCCCCCCEEEEEC--CcHHHHHHHHHH
Confidence 3455679999988888888999999999995 7 689999999999999988887 7899876 499999999999
Q ss_pred HHhCCeEEEEeCCCCCccccchhHHHHHCC-eEEEECCC-ChHHHHHHHHHHHHHHhccCCCccchhhhhhhhHhhhhhh
Q 019910 163 AERGLKSHLLLRGEQPQILTGYNLISTIYG-KVTYVPRT-HYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASLTAQKSR 240 (334)
Q Consensus 163 a~~Gl~~~ivv~~~~p~~~~gn~~~~~~~G-~V~~v~~~-~y~~~~~~~~~~a~~~~~~~g~~~w~~~~~~~~~~~~~~~ 240 (334)
+++|++|++|||.+.|. .+..+++.|| +|+.++.. .|++..+.+++
T Consensus 81 ~~~G~~~~iv~p~~~~~---~k~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~----------------------------- 128 (303)
T 2v03_A 81 ALKGYRMKLLMPDNMSQ---ERRAAMRAYGAELILVTKEQGMEGARDLALE----------------------------- 128 (303)
T ss_dssp HHHTCEEEEEEETTSCH---HHHHHHHHTTCEEEEECTTTHHHHHHHHHHH-----------------------------
T ss_pred HHcCCcEEEEECCCCCH---HHHHHHHHcCCEEEEECCCCCHHHHHHHHHH-----------------------------
Confidence 99999999999998764 3678999999 99999863 46654333221
Q ss_pred cccccchhhhhccccccCcEEEEcCCCcchhHHH-HHHHHHHHHHHhhhcCCCCCCEEEEcCCchhHHHHHHHHHHHcCC
Q 019910 241 ASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVALL-GVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGLGAICLGC 319 (334)
Q Consensus 241 ~~~~~~~~~~~~l~~~~~~~y~IpeGgs~p~a~~-G~~~la~EI~eq~~~g~~~~D~Vvvp~GtGgt~aGl~~g~k~lg~ 319 (334)
+....+..| + .+..||.... ||.+++.||.+|+ ++ .+|+||||+|||||++|++.+++.++|
T Consensus 129 ------------~~~~~~~~~-~-~~~~n~~~~~~g~~t~~~Ei~~q~--~~-~~d~vvvpvG~GG~~~Gi~~~~k~~~p 191 (303)
T 2v03_A 129 ------------MANRGEGKL-L-DQFNNPDNPYAHYTTTGPEIWQQT--GG-RITHFVSSMGTTGTITGVSRFMREQSK 191 (303)
T ss_dssp ------------HHHTTSCEE-C-CTTTCTHHHHHHHHTHHHHHHHHT--TT-CCCEEEEECSSSHHHHHHHHHHHTSSS
T ss_pred ------------HHHhCCCcc-c-CCcCChhhHHHhcCCcHHHHHHHh--CC-CCCEEEEEeCccHhHHHHHHHHHHhCC
Confidence 111111223 3 3346787765 7899999999998 32 489999999999999999999999999
Q ss_pred CCeEEEEEeccCCC
Q 019910 320 VPLFNTLLVKLSRG 333 (334)
Q Consensus 320 ~~~VigV~~~gs~~ 333 (334)
.++||||++.++..
T Consensus 192 ~~~vigve~~~~~~ 205 (303)
T 2v03_A 192 PVTIVGLQPEEGSS 205 (303)
T ss_dssp CCEEEEEEECTTCC
T ss_pred CCEEEEEcCCCCcc
Confidence 99999999998864
No 20
>1y7l_A O-acetylserine sulfhydrylase, O-acetylserine (thiol)-lyase; X-RAY crystallography, sulfhydrylase; HET: LLP; 1.55A {Haemophilus influenzae} SCOP: c.79.1.1 PDB: 3iqg_X* 3iqh_X* 3iqi_X* 1fcj_A* 1oas_A* 1d6s_A*
Probab=100.00 E-value=4.7e-33 Score=265.68 Aligned_cols=193 Identities=13% Similarity=0.031 Sum_probs=158.3
Q ss_pred ccccCCCCcCCCCCccccCCCCeEEEEeCCCCCCCChhHHHHHHHhhhHHHHhcCC----CEEEEeCCccchHHHHHHHH
Q 019910 86 ISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIV----TDLVTCGGCQSAHATAVAVS 161 (334)
Q Consensus 86 ~~~~~~~Tp~l~~~~l~~~~g~~lyvKrDDl~~p~~gGnK~RkL~~lL~~a~~~g~----~~VVt~Gg~qsNh~~AvAaa 161 (334)
+....+-||+++.+.+ + .|.+||+|+|++ +| +||||+|++.+++..+.+.|. ++||+++ +|||++|+|++
T Consensus 7 i~~~~~~TPL~~l~~l-~-~g~~i~~K~E~~-~p-tGSfK~R~a~~~i~~a~~~g~~~~~~~vv~~s--sGN~g~a~A~~ 80 (316)
T 1y7l_A 7 NSYSIGNTPLVRLKHF-G-HNGNVVVKIEGR-NP-SYSVKCRIGANMVWQAEKDGTLTKGKEIVDAT--SGNTGIALAYV 80 (316)
T ss_dssp GGGGCCCCCEEECSSS-S-STTCEEEEETTS-SG-GGBTHHHHHHHHHHHHHHTTSSCTTCEEEESC--CSHHHHHHHHH
T ss_pred hHHhcCCCCcEECccC-C-CCCEEEEEeccC-CC-CCChHHHHHHHHHHHHHHcCCCCCCCEEEEeC--CcHHHHHHHHH
Confidence 3445667999998888 6 788999999999 57 699999999999999999887 7899875 59999999999
Q ss_pred HHHhCCeEEEEeCCCCCccccchhHHHHHCC-eEEEECCC-ChHHHHHHHHHHHHHHhccCCCccchhhhhhhhHhhhhh
Q 019910 162 CAERGLKSHLLLRGEQPQILTGYNLISTIYG-KVTYVPRT-HYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASLTAQKS 239 (334)
Q Consensus 162 aa~~Gl~~~ivv~~~~p~~~~gn~~~~~~~G-~V~~v~~~-~y~~~~~~~~~~a~~~~~~~g~~~w~~~~~~~~~~~~~~ 239 (334)
|+++|++|++|||...+. .+..+++.|| +|+.++.. .|+++.+.+++
T Consensus 81 a~~~G~~~~iv~p~~~~~---~k~~~~~~~GA~v~~~~~~~~~~~~~~~a~~---------------------------- 129 (316)
T 1y7l_A 81 AAARGYKITLTMPETMSL---ERKRLLCGLGVNLVLTEGAKGMKGAIAKAEE---------------------------- 129 (316)
T ss_dssp HHHHTCCEEEEEETTSCH---HHHHHHHHTTCEEEEECGGGHHHHHHHHHHH----------------------------
T ss_pred HHHcCCcEEEEECCCCCH---HHHHHHHHcCCEEEEeCCCCCHHHHHHHHHH----------------------------
Confidence 999999999999998764 3678999999 99999853 26654333221
Q ss_pred hcccccchhhhhccccccCcE-EEEcCCCcchhHHH-HHHHHHHHHHHhhhcCCCCCCEEEEcCCchhHHHHHHHHHHHc
Q 019910 240 RASCLGQMDAHKGIDNCRKKV-LIVNEGAGDAVALL-GVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGLGAICL 317 (334)
Q Consensus 240 ~~~~~~~~~~~~~l~~~~~~~-y~IpeGgs~p~a~~-G~~~la~EI~eq~~~g~~~~D~Vvvp~GtGgt~aGl~~g~k~l 317 (334)
+....++. |++ .+..||.... ||.+++.||.+|+ ++ .+|+||+|+|||||++|++.+++.+
T Consensus 130 -------------~~~~~~~~~~~~-~~~~n~~~~~~g~~t~~~Ei~~q~--~~-~~d~vvvpvG~GG~~~Gi~~~~k~~ 192 (316)
T 1y7l_A 130 -------------IVASDPSRYVML-KQFENPANPQIHRETTGPEIWKDT--DG-KVDVVVAGVGTGGSITGISRAIKLD 192 (316)
T ss_dssp -------------HHHHCTTTEECC-CTTTCTHHHHHHHHTHHHHHHHHT--TT-CEEEEEEECSSSHHHHHHHHHHHHT
T ss_pred -------------HHHhCCCCEEEC-CCCCCHHHHHHHHHHHHHHHHHHc--CC-CCCEEEEeCCccccHHHHHHHHHHh
Confidence 11122344 544 4567888766 5999999999998 32 4899999999999999999999999
Q ss_pred C-CCCeEEEEEeccCC
Q 019910 318 G-CVPLFNTLLVKLSR 332 (334)
Q Consensus 318 g-~~~~VigV~~~gs~ 332 (334)
+ |.++||||++.+++
T Consensus 193 ~~~~~~vi~ve~~~~~ 208 (316)
T 1y7l_A 193 FGKQITSVAVEPVESP 208 (316)
T ss_dssp SCCCCEEEEEEETTSC
T ss_pred CCCCCEEEEEecCCCc
Confidence 9 99999999999874
No 21
>1z7w_A Cysteine synthase; transferase; HET: PLP; 2.20A {Arabidopsis thaliana} SCOP: c.79.1.1 PDB: 1z7y_A* 2isq_A*
Probab=100.00 E-value=7.8e-33 Score=265.03 Aligned_cols=195 Identities=13% Similarity=0.061 Sum_probs=159.2
Q ss_pred ccccCCCCcCCCCCccccCCCCeEEEEeCCCCCCCChhHHHHHHHhhhHHHHhcCC-----CEEEEeCCccchHHHHHHH
Q 019910 86 ISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIV-----TDLVTCGGCQSAHATAVAV 160 (334)
Q Consensus 86 ~~~~~~~Tp~l~~~~l~~~~g~~lyvKrDDl~~p~~gGnK~RkL~~lL~~a~~~g~-----~~VVt~Gg~qsNh~~AvAa 160 (334)
+....+-||++..+.+++..|.+||+|+|++| | +||||+|++.+++..+.+.|. ++||+++ +|||++|+|+
T Consensus 9 i~~~~~~TPL~~~~~l~~~~g~~v~~K~E~~~-p-tGSfK~R~a~~~l~~a~~~G~~~~~~~~vv~as--sGN~g~alA~ 84 (322)
T 1z7w_A 9 VTELIGNTPLVYLNNVAEGCVGRVAAKLEMME-P-CSSVKDRIGFSMISDAEKKGLIKPGESVLIEPT--SGNTGVGLAF 84 (322)
T ss_dssp GGGGSSCCCEEECCGGGTTCSSEEEEEEGGGS-T-TSBTHHHHHHHHHHHHHHTTSCCTTTCEEEEEC--SSHHHHHHHH
T ss_pred HHHhcCCCCeEECccccccCCceEEEEecccC-C-CCchHHHHHHHHHHHHHHcCCCCCCCCEEEEeC--CCHHHHHHHH
Confidence 45566779999998888888899999999995 7 689999999999999999998 7888754 6999999999
Q ss_pred HHHHhCCeEEEEeCCCCCccccchhHHHHHCC-eEEEECCC-ChHHHHHHHHHHHHHHhccCCCccchhhhhhhhHhhhh
Q 019910 161 SCAERGLKSHLLLRGEQPQILTGYNLISTIYG-KVTYVPRT-HYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASLTAQK 238 (334)
Q Consensus 161 aaa~~Gl~~~ivv~~~~p~~~~gn~~~~~~~G-~V~~v~~~-~y~~~~~~~~~~a~~~~~~~g~~~w~~~~~~~~~~~~~ 238 (334)
+|+++|++|++|||...+. .+..+++.|| +|+.++.. .|+++.+.+++
T Consensus 85 aa~~~G~~~~iv~p~~~~~---~k~~~~~~~GA~V~~~~~~~~~~~~~~~a~~--------------------------- 134 (322)
T 1z7w_A 85 TAAAKGYKLIITMPASMST---ERRIILLAFGVELVLTDPAKGMKGAIAKAEE--------------------------- 134 (322)
T ss_dssp HHHHHTCEEEEEEETTSCH---HHHHHHHHTTCEEEEECGGGHHHHHHHHHHH---------------------------
T ss_pred HHHHcCCCEEEEeCCCCCH---HHHHHHHHcCCEEEEeCCCCCHHHHHHHHHH---------------------------
Confidence 9999999999999998754 4678999999 99999853 25543332221
Q ss_pred hhcccccchhhhhccccccCcEEEEcCCCcchhHH-HHHHHHHHHHHHhhhcCCCCCCEEEEcCCchhHHHHHHHHHHHc
Q 019910 239 SRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVAL-LGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGLGAICL 317 (334)
Q Consensus 239 ~~~~~~~~~~~~~~l~~~~~~~y~IpeGgs~p~a~-~G~~~la~EI~eq~~~g~~~~D~Vvvp~GtGgt~aGl~~g~k~l 317 (334)
+....++.|+++ +..||... .||.+++.||.+|+ ++ .+|+||||+|||||++|++.+++.+
T Consensus 135 --------------~~~~~~~~~~i~-~~~n~~~~~~g~~t~~~Ei~~q~--~~-~~d~vvvpvG~GG~~~Gi~~~~k~~ 196 (322)
T 1z7w_A 135 --------------ILAKTPNGYMLQ-QFENPANPKIHYETTGPEIWKGT--GG-KIDGFVSGIGTGGTITGAGKYLKEQ 196 (322)
T ss_dssp --------------HHHHCTTEEECC-TTTCTHHHHHHHHTHHHHHHHHT--TT-CCCEEEEECSSSHHHHHHHHHHHHH
T ss_pred --------------HHHhCCCeEeCC-CCCChhHHHHHHHHHHHHHHHHh--cC-CCCEEEEecCccHhHHHHHHHHHHc
Confidence 112233455553 34566553 48999999999997 32 5899999999999999999999999
Q ss_pred CCCCeEEEEEeccCC
Q 019910 318 GCVPLFNTLLVKLSR 332 (334)
Q Consensus 318 g~~~~VigV~~~gs~ 332 (334)
+|.++|+||++.+++
T Consensus 197 ~p~~~vigve~~~~~ 211 (322)
T 1z7w_A 197 NANVKLYGVEPVESA 211 (322)
T ss_dssp CTTCEEEEEEEGGGC
T ss_pred CCCCEEEEEecCCCc
Confidence 999999999999875
No 22
>2gn0_A Threonine dehydratase catabolic; TDCB, biodegradative threonine deaminase, PLP, threonine DEH L-threonine metabolism; HET: LLP; 1.70A {Salmonella typhimurium} PDB: 2gn1_A* 2gn2_A*
Probab=100.00 E-value=3.9e-33 Score=269.79 Aligned_cols=187 Identities=13% Similarity=0.165 Sum_probs=154.7
Q ss_pred CCCcCCCCCccccCCCCeEEEEeCCCCCCCChhHHHHHHHhhhHHHH-hcCCCEEEEeCCccchHHHHHHHHHHHhCCeE
Q 019910 91 NTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLE-DHIVTDLVTCGGCQSAHATAVAVSCAERGLKS 169 (334)
Q Consensus 91 ~~Tp~l~~~~l~~~~g~~lyvKrDDl~~p~~gGnK~RkL~~lL~~a~-~~g~~~VVt~Gg~qsNh~~AvAaaaa~~Gl~~ 169 (334)
+-||++..++|++..|.+||+|+|++| | +||||+|++.+++..+. +.+.++||+++ +|||++|+|++|+++|++|
T Consensus 39 ~~TPL~~l~~l~~~~g~~i~~K~E~~~-p-tGSfKdR~a~~~i~~a~~~~~~~~vv~~s--sGN~g~alA~aa~~~G~~~ 114 (342)
T 2gn0_A 39 YKTGMPRSNYFSERCKGEIFLKFENMQ-R-TGSFKIRGAFNKLSSLTEAEKRKGVVACS--AGNHAQGVSLSCAMLGIDG 114 (342)
T ss_dssp CCCCCCBCHHHHHHHTSEEEEEEGGGS-G-GGBTHHHHHHHHHHHSCHHHHHTCEEEEC--SSHHHHHHHHHHHHHTCCE
T ss_pred CCCCceEchhhHHHhCCEEEEEEccCC-C-cCChHHHHHHHHHHHHHHhcCCCEEEEEC--CChHHHHHHHHHHHcCCCE
Confidence 458888887777777899999999995 7 69999999999998875 46678899875 6999999999999999999
Q ss_pred EEEeCCCCCccccchhHHHHHCC-eEEEECCCChHHHHHHHHHHHHHHhccCCCccchhhhhhhhHhhhhhhcccccchh
Q 019910 170 HLLLRGEQPQILTGYNLISTIYG-KVTYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASLTAQKSRASCLGQMD 248 (334)
Q Consensus 170 ~ivv~~~~p~~~~gn~~~~~~~G-~V~~v~~~~y~~~~~~~~~~a~~~~~~~g~~~w~~~~~~~~~~~~~~~~~~~~~~~ 248 (334)
++|||.+.+. .|..+++.|| +|+.++. .|+++.+.++++
T Consensus 115 ~iv~p~~~~~---~k~~~~~~~GA~V~~~~~-~~~~~~~~a~~l------------------------------------ 154 (342)
T 2gn0_A 115 KVVMPKGAPK---SKVAATCDYSAEVVLHGD-NFNDTIAKVSEI------------------------------------ 154 (342)
T ss_dssp EEEECTTSCH---HHHHHHHHHSCEEEECCS-SHHHHHHHHHHH------------------------------------
T ss_pred EEEECCCCCH---HHHHHHHHcCCEEEEECC-CHHHHHHHHHHH------------------------------------
Confidence 9999998754 4778999999 9999986 477654433221
Q ss_pred hhhccccccCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhcCCCCCCEEEEcCCchhHHHHHHHHHHHcCCCCeEEEEEe
Q 019910 249 AHKGIDNCRKKVLIVNEGAGDAVALLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGLGAICLGCVPLFNTLLV 328 (334)
Q Consensus 249 ~~~~l~~~~~~~y~IpeGgs~p~a~~G~~~la~EI~eq~~~g~~~~D~Vvvp~GtGgt~aGl~~g~k~lg~~~~VigV~~ 328 (334)
....+..|+.| ..||....||.+++.||.+|+ + .+|+||+|+|||||++|++.+++.++|.++||||++
T Consensus 155 -----~~~~~~~~~~~--~~n~~~~~g~~t~~~Ei~~q~--~--~~d~vvvpvG~GG~~~Gi~~~~k~~~p~~~vigve~ 223 (342)
T 2gn0_A 155 -----VETEGRIFIPP--YDDPKVIAGQGTIGLEIMEDL--Y--DVDNVIVPIGGGGLIAGIAIAIKSINPTIKVIGVQA 223 (342)
T ss_dssp -----HHHHCCEECCS--SSSHHHHHHHHHHHHHHHHHC--T--TCCEEEEECSSSHHHHHHHHHHHHHCTTSEEEEEEE
T ss_pred -----HHhcCCEEeCC--CCCHHHHHHHHHHHHHHHHHc--C--CCCEEEEecCCchHHHHHHHHHHHhCCCCeEEEEEe
Confidence 11122344444 347999999999999999997 3 589999999999999999999999999999999999
Q ss_pred ccCC
Q 019910 329 KLSR 332 (334)
Q Consensus 329 ~gs~ 332 (334)
.++.
T Consensus 224 ~~~~ 227 (342)
T 2gn0_A 224 ENVH 227 (342)
T ss_dssp TTBC
T ss_pred CCCh
Confidence 8864
No 23
>1x1q_A Tryptophan synthase beta chain; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.50A {Thermus thermophilus}
Probab=100.00 E-value=2.7e-33 Score=278.01 Aligned_cols=249 Identities=13% Similarity=0.035 Sum_probs=178.4
Q ss_pred ccCCCCcCCCCceeeeccChHHHHHHHhh-hhhhccCCCCceeecccccccccCCCCCCCcccccCCCCcCCCCCccccC
Q 019910 26 SASGQLSNSPQGICNVRMSGEELLSRLLD-RKWALTSPDSKIHQIKLFTTTEKHGGGPLGGISFLNNTCPFLGDDMIMRD 104 (334)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~p~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~Tp~l~~~~l~~~ 104 (334)
-+..++++.|+|.|.||++...+ ..+.. .+.+.+.|.+.=....++.. ..+ +-||++..++|++.
T Consensus 24 ~~~~~~~~~~gg~~~p~~~~~~~-~~i~~A~~~~~~~~~~~~~~~~~~~~----~ig---------~~TPL~~~~~Ls~~ 89 (418)
T 1x1q_A 24 PDARGRFGPYGGRYVPETLIPAL-EELEAAYREAKKDPAFLEELDHYLRQ----FAG---------RPTPLYHAKRLSEY 89 (418)
T ss_dssp SCTTSEETTEECCCCCTTTHHHH-HHHHHHHHHHHHCHHHHHHHHHHHHH----TTC---------CSCCEEECHHHHHH
T ss_pred CCCCCccCCcCCEECCchhhhhH-HHHHHHHHHHhhChHHHHHHHHhhhc----ccC---------CCCCcEEhHHhHhh
Confidence 46678999999999999985553 33333 46666655543111111111 111 22777777777776
Q ss_pred C-CCeEEEEeCCCCCCCChhHHHHHHHhhhHHHHhcCCCEEEEeCCccchHHHHHHHHHHHhCCeEEEEeCCCCCccccc
Q 019910 105 E-DRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIVTDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGEQPQILTG 183 (334)
Q Consensus 105 ~-g~~lyvKrDDl~~p~~gGnK~RkL~~lL~~a~~~g~~~VVt~Gg~qsNh~~AvAaaaa~~Gl~~~ivv~~~~p~~~~g 183 (334)
. +.+||+||||+| | +|+||+|++.+.+..+++.|.+++|++.| +|||++|+|++|+++|++|+||||...++.+..
T Consensus 90 ~gg~~i~lK~E~l~-p-tGSfK~R~a~~~i~~a~~~g~~~vI~~~s-sGNhg~avA~aaa~~Gi~~~I~mp~~~~~~~~~ 166 (418)
T 1x1q_A 90 WGGAQVFLKREDLL-H-TGAHKINNTLGQALLARRMGKRRVIAETG-AGQHGVSVATVAALFGLECVVYMGEEDVRRQAL 166 (418)
T ss_dssp HTSSEEEEEEGGGS-G-GGBTTHHHHHHHHHHHHHHTCCEEEEECS-SSHHHHHHHHHHHHHTCEEEEEEEHHHHHTCHH
T ss_pred cCCceEEEEEccCC-c-CccHHHHHHHHHHHHHHHcCCCEEEEecC-chHHHHHHHHHHHHcCCCEEEEECCCcchhhhH
Confidence 6 589999999996 5 68999999998888888889988886443 499999999999999999999999753332335
Q ss_pred hhHHHHHCC-eEEEECC--CChHHHHHHHHHHHHHHhccCCCccchhhhhhhhHhhhhhhcccccchhhhhccccccCc-
Q 019910 184 YNLISTIYG-KVTYVPR--THYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASLTAQKSRASCLGQMDAHKGIDNCRKK- 259 (334)
Q Consensus 184 n~~~~~~~G-~V~~v~~--~~y~~~~~~~~~~a~~~~~~~g~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~- 259 (334)
|+..++.|| +|+.++. .+|++..+.... .+....++
T Consensus 167 kv~~~~~~GA~Vv~v~~~~~~~~~a~~~a~~----------------------------------------~~~~~~~~~ 206 (418)
T 1x1q_A 167 NVFRMKLLGAEVRPVAAGSRTLKDATNEAIR----------------------------------------DWITNVRTT 206 (418)
T ss_dssp HHHHHHHTTCEEEEECSTTSSHHHHHHHHHH----------------------------------------HHHHTTTTE
T ss_pred HHHHHHHCCCEEEEECCCCCCHHHHHHHHHH----------------------------------------HHHHhCCCc
Confidence 778999999 9999985 356654332110 01112223
Q ss_pred EEEEcCC-CcchhH--H-HHHHHHHHHHHHhhhc-CCCCCCEEEEcCCchhHHHHHHHHHHHc-CCCCeEEEEEeccC
Q 019910 260 VLIVNEG-AGDAVA--L-LGVFRLLQYLSQDHLL-GRKRAIKFVVDAGTGTTAVGLGLGAICL-GCVPLFNTLLVKLS 331 (334)
Q Consensus 260 ~y~IpeG-gs~p~a--~-~G~~~la~EI~eq~~~-g~~~~D~Vvvp~GtGgt~aGl~~g~k~l-g~~~~VigV~~~gs 331 (334)
.|+++.+ +++|.. + .|+.+++.||.+|+.. .+..||+||+|+||||+++|++.+++.+ ++.++||||++.++
T Consensus 207 ~~i~~~~~n~~p~~~~v~~gq~t~~~Ei~~Ql~~~~~~~~D~vvvpvGgGG~~~Gi~~~~k~l~~p~~~vigVe~~g~ 284 (418)
T 1x1q_A 207 FYILGSVVGPHPYPMMVRDFQSVIGEEVKRQSLELFGRLPDALIAAVGGGSNAIGLFAPFAYLPEGRPKLIGVEAAGE 284 (418)
T ss_dssp EECCCCSSSSTTHHHHHHHHHTHHHHHHHHHHHHHHSSCCSEEEEECSSSSHHHHHHHHHHTSCTTCCEEEEEEECCT
T ss_pred EEEeCCccCCCCcHHHHHHHHHHHHHHHHHHHHhhcCCCCCEEEEecCCcHhHHHHHHHHHHhCCCCCeEEEEecCCc
Confidence 4544432 224432 2 3888999999999742 1235899999999999999999999988 89999999999987
No 24
>1ve5_A Threonine deaminase; riken structural genomics/Pro initiative, RSGI, structural genomics, lyase; HET: PLP; 2.15A {Thermus thermophilus} SCOP: c.79.1.1
Probab=100.00 E-value=1.5e-32 Score=261.45 Aligned_cols=189 Identities=17% Similarity=0.111 Sum_probs=153.2
Q ss_pred CCCcCCCCCccccCCCCeEEEEeCCCCCCCChhHHHHHHHhhhHHHHhcCCCEEEEeCCccchHHHHHHHHHHHhCCeEE
Q 019910 91 NTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIVTDLVTCGGCQSAHATAVAVSCAERGLKSH 170 (334)
Q Consensus 91 ~~Tp~l~~~~l~~~~g~~lyvKrDDl~~p~~gGnK~RkL~~lL~~a~~~g~~~VVt~Gg~qsNh~~AvAaaaa~~Gl~~~ 170 (334)
+-||++..+.|++..|.+||+|+|++| | +|+||+|.+.+++..+. +.++||+++ +|||++|+|++|+++|++|+
T Consensus 19 ~~TPL~~~~~l~~~~g~~i~~K~E~~~-p-tgSfKdR~a~~~i~~l~--~~~~vv~~s--sGN~g~alA~~a~~~G~~~~ 92 (311)
T 1ve5_A 19 HRTPLLTSRLLDGLLGKRLLLKAEHLQ-K-TGSFKARGALSKALALE--NPKGLLAVS--SGNHAQGVAYAAQVLGVKAL 92 (311)
T ss_dssp CCCCEEECHHHHHHTTSEEEEEEGGGS-G-GGBTHHHHHHHHHHHSS--SCCCEEEEC--SSHHHHHHHHHHHHHTCCEE
T ss_pred CCCCceechhhHHhhCCeEEEEecCCC-C-cCCcHHHHHHHHHHHhc--CCCeEEEEC--CCcHHHHHHHHHHHcCCCEE
Confidence 457888777777777899999999995 7 79999999999998766 778899875 59999999999999999999
Q ss_pred EEeCCCCCccccchhHHHHHCC-eEEEECCCChHHHHHHHHHHHHHHhccCCCccchhhhhhhhHhhhhhhcccccchhh
Q 019910 171 LLLRGEQPQILTGYNLISTIYG-KVTYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASLTAQKSRASCLGQMDA 249 (334)
Q Consensus 171 ivv~~~~p~~~~gn~~~~~~~G-~V~~v~~~~y~~~~~~~~~~a~~~~~~~g~~~w~~~~~~~~~~~~~~~~~~~~~~~~ 249 (334)
+|||...+.. |..+++.|| +|+.++.. |+++.+.+++++
T Consensus 93 iv~p~~~~~~---k~~~~~~~GA~V~~~~~~-~~~~~~~a~~~~------------------------------------ 132 (311)
T 1ve5_A 93 VVMPEDASPY---KKACARAYGAEVVDRGVT-AKNREEVARALQ------------------------------------ 132 (311)
T ss_dssp EECCCC--CC---HHHHHHHTTCEEECTTCC-TTTHHHHHHHHH------------------------------------
T ss_pred EEECCCCCHH---HHHHHHHcCCEEEEECCC-HHHHHHHHHHHH------------------------------------
Confidence 9999987643 678999999 99999864 776554433211
Q ss_pred hhccccccCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhcCCCCCCEEEEcCCchhHHHHHHHHHHHcCCCCeEEEEEec
Q 019910 250 HKGIDNCRKKVLIVNEGAGDAVALLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGLGAICLGCVPLFNTLLVK 329 (334)
Q Consensus 250 ~~~l~~~~~~~y~IpeGgs~p~a~~G~~~la~EI~eq~~~g~~~~D~Vvvp~GtGgt~aGl~~g~k~lg~~~~VigV~~~ 329 (334)
...+..|+.|. .||....||.+++.||.+|+......+|+||+|+|||||++|++.+++.+++.++|+||++.
T Consensus 133 -----~~~~~~~~~~~--~n~~~~~g~~t~~~Ei~~q~~~~~~~~d~vvvpvG~Gg~~~Gi~~~~k~~~~~~~vigve~~ 205 (311)
T 1ve5_A 133 -----EETGYALIHPF--DDPLVIAGQGTAGLELLAQAGRMGVFPGAVLAPVGGGGLLAGLATAVKALSPTTLVLGVEPE 205 (311)
T ss_dssp -----HHHCCEECCSS--SSHHHHHHHHHHHHHHHHHHHHHTCCCSEEEEECSSSHHHHHHHHHHHHHCTTSEEEEEEEG
T ss_pred -----HhcCcEecCCC--CCcchhhhccHHHHHHHHHHHhcCCCCCEEEEccCchHHHHHHHHHHHHhCCCCEEEEEEeC
Confidence 11233454443 38999999999999999998311125899999999999999999999999999999999998
Q ss_pred cCC
Q 019910 330 LSR 332 (334)
Q Consensus 330 gs~ 332 (334)
++.
T Consensus 206 ~~~ 208 (311)
T 1ve5_A 206 AAD 208 (311)
T ss_dssp GGC
T ss_pred CCh
Confidence 864
No 25
>1qop_B Tryptophan synthase beta chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.79.1.1 PDB: 1k7e_B* 1k7f_B* 1kfb_B* 1k3u_B* 1tjp_B* 1wbj_B* 2cli_B* 2clk_B* 2cll_B* 2j9x_B* 3cep_B* 1kfc_B* 1k8x_B* 1kfj_B* 1kfk_B* 2rh9_B* 2rhg_B* 2j9y_B* 1cw2_B* 1a5s_B* ...
Probab=100.00 E-value=3.6e-33 Score=274.77 Aligned_cols=246 Identities=13% Similarity=0.070 Sum_probs=175.5
Q ss_pred cCCCCcCCCCceeeeccChHHHHHHHhh-hhhhccCCCCceeecccccccccCCCCCCCcccccCCCCcCCCCCccccCC
Q 019910 27 ASGQLSNSPQGICNVRMSGEELLSRLLD-RKWALTSPDSKIHQIKLFTTTEKHGGGPLGGISFLNNTCPFLGDDMIMRDE 105 (334)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~p~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~Tp~l~~~~l~~~~ 105 (334)
+..++++.|+|.|.||++-..+ ..+.. .+.+.+.|.++=....++.. ..+ +=||++..++|++..
T Consensus 3 ~~~~~~~~~~g~~~~~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~----~ig---------~~TPL~~~~~l~~~~ 68 (396)
T 1qop_B 3 LLNPYFGEFGGMYVPQILMPAL-NQLEEAFVSAQKDPEFQAQFADLLKN----YAG---------RPTALTKCQNITAGT 68 (396)
T ss_dssp SSCCEETTEEEEESCGGGHHHH-HHHHHHHHHHHTCHHHHHHHHHHHHH----TTC---------CSCCEEECHHHHTTS
T ss_pred CCCCccCCcCCEeCCHHHHHHH-HHHHHHHHHHhcChHHHHHHHHHHHH----hCC---------CCCCcEEhhhhhhcc
Confidence 4568899999999999985543 33433 45555555432211111111 111 127777777777777
Q ss_pred CCeEEEEeCCCCCCCChhHHHHHHHhhhHHHHhcCCCEEEE-eCCccchHHHHHHHHHHHhCCeEEEEeCCCCCccccch
Q 019910 106 DRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIVTDLVT-CGGCQSAHATAVAVSCAERGLKSHLLLRGEQPQILTGY 184 (334)
Q Consensus 106 g~~lyvKrDDl~~p~~gGnK~RkL~~lL~~a~~~g~~~VVt-~Gg~qsNh~~AvAaaaa~~Gl~~~ivv~~~~p~~~~gn 184 (334)
|.+||+||||+| | +|+||+|.+.+.+..++++|.++||+ +|+ |||++|+|++|+++|++|+||||....+....|
T Consensus 69 g~~i~lK~E~l~-p-tGSfK~R~a~~~~~~a~~~g~~~vi~e~ss--GNhg~a~A~aa~~~G~~~~i~mp~~~~~~~~~~ 144 (396)
T 1qop_B 69 RTTLYLKREDLL-H-GGAHKTNQVLGQALLAKRMGKSEIIAETGA--GQHGVASALASALLGLKCRIYMGAKDVERQSPN 144 (396)
T ss_dssp SEEEEEEEGGGS-T-TSBTHHHHHHHHHHHHHHTTCCEEEEEESS--SHHHHHHHHHHHHHTCEEEEEEEHHHHHHCHHH
T ss_pred CCeEEEEeccCC-C-CCcHHHHHHHHHHHHHHHcCcCEEEEecCc--hHHHHHHHHHHHHCCCcEEEEEcCCchhhhhhH
Confidence 899999999996 6 68999999988888888999999998 454 899999999999999999999998522222346
Q ss_pred hHHHHHCC-eEEEECCC--ChHHHHHHHHHHHHHHhccCCCccchhhhhhhhHhhhhhhcccccchhhhhccccccCcEE
Q 019910 185 NLISTIYG-KVTYVPRT--HYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASLTAQKSRASCLGQMDAHKGIDNCRKKVL 261 (334)
Q Consensus 185 ~~~~~~~G-~V~~v~~~--~y~~~~~~~~~~a~~~~~~~g~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~y 261 (334)
+..++.|| +|+.++.+ .|++......+ . +.+..++.+
T Consensus 145 ~~~~~~~GA~V~~v~~~~~~~~~a~~~a~~------------~----------------------------~~~~~~~~~ 184 (396)
T 1qop_B 145 VFRMRLMGAEVIPVHSGSATLKDACNEALR------------D----------------------------WSGSYETAH 184 (396)
T ss_dssp HHHHHHTTCEEEEECSTTSSHHHHHHHHHH------------H----------------------------HHHHTTTEE
T ss_pred HHHHHHCCCEEEEECCCCCCHHHHHHHHHH------------H----------------------------HHhccCCcE
Confidence 78899999 99999752 56643322110 0 111223444
Q ss_pred EEcCCCc--chhH--HH-HHHHHHHHHHHhhhc-CCCCCCEEEEcCCchhHHHHHHHHHHHcCCCCeEEEEEeccC
Q 019910 262 IVNEGAG--DAVA--LL-GVFRLLQYLSQDHLL-GRKRAIKFVVDAGTGTTAVGLGLGAICLGCVPLFNTLLVKLS 331 (334)
Q Consensus 262 ~IpeGgs--~p~a--~~-G~~~la~EI~eq~~~-g~~~~D~Vvvp~GtGgt~aGl~~g~k~lg~~~~VigV~~~gs 331 (334)
+++.++. +|.. .. |+.+++.||.+|+.. .+..||+||+|+|||||++|++.+++ .++.++||||++.++
T Consensus 185 ~~~~~~~n~~p~~~~v~~g~~t~~~Ei~~Ql~~~~~~~~d~vvvpvG~GG~~~Gi~~~~~-~~~~~~vigVe~~~~ 259 (396)
T 1qop_B 185 YMLGTAAGPHPYPTIVREFQRMIGEETKAQILDKEGRLPDAVIACVGGGSNAIGMFADFI-NDTSVGLIGVEPGGH 259 (396)
T ss_dssp ECCCSSCSSTTHHHHHHHTTTHHHHHHHHHHHHHHSSCCSEEEEECSSSHHHHHHHGGGT-TCTTSEEEEEEEEET
T ss_pred EEeCCcCCCCCchHHHHHHHhHHHHHHHHHHHHhcCCCCCEEEEcCCchHHHHHHHHHHh-cCCCCEEEEEeCCCc
Confidence 4555533 3332 23 678899999998731 12358999999999999999999998 589999999999986
No 26
>3ss7_X D-serine dehydratase; type II fold, ALFA,beta-elimination, P 5'-phosphate, lyase; HET: PLP; 1.55A {Escherichia coli} PDB: 3ss9_X* 3r0x_A* 3r0z_A
Probab=100.00 E-value=1.1e-32 Score=275.81 Aligned_cols=243 Identities=11% Similarity=0.039 Sum_probs=183.1
Q ss_pred CceeeeccChHHHH-HHH-hhhhhhccCCCCceeecccccccccCCCCCCCcccccCCCCcCCCCCccc----cCC----
Q 019910 36 QGICNVRMSGEELL-SRL-LDRKWALTSPDSKIHQIKLFTTTEKHGGGPLGGISFLNNTCPFLGDDMIM----RDE---- 105 (334)
Q Consensus 36 ~~~~~~~~~~~~~~-~~~-~~~~~~~~~p~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~Tp~l~~~~l~----~~~---- 105 (334)
--|+.|...+.+.. ..+ .+.+.+.......|++.++||. ..|....+...+-||++..++|+ +..
T Consensus 25 ~~w~~~~~~~~~~~~~~~~~~~~di~~a~~~l~~~~~~l~~-----~~~~~~~~~g~~~TPL~~~~~l~~~l~~~~g~~~ 99 (442)
T 3ss7_X 25 TTWFNPGTTSLAEGLPYVGLTEQDVQDAHARLSRFAPYLAK-----AFPETAATGGIIESELVAIPAMQKRLEKEYQQPI 99 (442)
T ss_dssp CEEECTTCCCHHHHGGGTSCCHHHHHHHHHHHHHHHHHHHH-----HSGGGGGGTTCCCCCEEECHHHHHHHHHHHTCCC
T ss_pred ceeeCCCCCchhhhcCcCCCCHHHHHHHHHHHHhCHHhHhh-----hChhhhccCCCCCCCcEEhHhhhhHHHHhhCCCc
Confidence 45666666554321 111 1234555555567888899986 34444556677889999998876 544
Q ss_pred CCeEEEEeCCCCCCCChhHHHHHHHhhhHH-----HHhcCC---------------------CEEEEeCCccchHHHHHH
Q 019910 106 DRCFYVVRDDLLHPLVNGNKARKMDALLPL-----LEDHIV---------------------TDLVTCGGCQSAHATAVA 159 (334)
Q Consensus 106 g~~lyvKrDDl~~p~~gGnK~RkL~~lL~~-----a~~~g~---------------------~~VVt~Gg~qsNh~~AvA 159 (334)
+.+||+|+|++| |.+||||+|++.+.+.. |++.|. .+||+.+ +||||+|+|
T Consensus 100 ~~~v~lK~E~~~-p~tGSfK~Rga~~~i~~l~~~~a~~~G~l~~g~~~~~l~~~~~r~~~~~~~vv~aS--sGNhg~avA 176 (442)
T 3ss7_X 100 SGQLLLKKDSHL-PISGSIKARGGIYEVLAHAEKLALEAGLLTLDDDYSKLLSPEFKQFFSQYSIAVGS--TGNLGLSIG 176 (442)
T ss_dssp CSEEEEEEGGGC-TTTSBTHHHHHHHHHHHHHHHHHHHTTSCCTTSCGGGGGSHHHHHHHHTSEEEEEC--SSHHHHHHH
T ss_pred CCeEEEeecCCC-CCCCCcHHHHHHHHHHHHhHHHHHHcCCCCCCcchhhhhhhhhhhhccCcEEEEEC--CCHHHHHHH
Confidence 489999999996 64699999999888864 678886 3777654 599999999
Q ss_pred HHHHHhCCeEEEEeCCCCCccccchhHHHHHCC-eEEEECCCChHHHHHHHHHHHHHHhccCCCccchhhhhhhhHhhhh
Q 019910 160 VSCAERGLKSHLLLRGEQPQILTGYNLISTIYG-KVTYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASLTAQK 238 (334)
Q Consensus 160 aaaa~~Gl~~~ivv~~~~p~~~~gn~~~~~~~G-~V~~v~~~~y~~~~~~~~~~a~~~~~~~g~~~w~~~~~~~~~~~~~ 238 (334)
++|+++|++|+||||.+.|.. |...++.|| +|+.++. +|++..+...+
T Consensus 177 ~~aa~~G~~~~Ivmp~~~~~~---k~~~~r~~GA~Vv~v~~-~~~~a~~~a~~--------------------------- 225 (442)
T 3ss7_X 177 IMSARIGFKVTVHMSADARAW---KKAKLRSHGVTVVEYEQ-DYGVAVEEGRK--------------------------- 225 (442)
T ss_dssp HHHHHHTCEEEEEEETTSCHH---HHHHHHHTTCEEEEESS-CHHHHHHHHHH---------------------------
T ss_pred HHHHHhCCcEEEEECCCCCHH---HHHHHHHCCCEEEEECC-CHHHHHHHHHH---------------------------
Confidence 999999999999999987653 678899999 9999986 58754443221
Q ss_pred hhcccccchhhhhccccccCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhc-C----CCCCCEEEEcCCchhHHHHHHHH
Q 019910 239 SRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVALLGVFRLLQYLSQDHLL-G----RKRAIKFVVDAGTGTTAVGLGLG 313 (334)
Q Consensus 239 ~~~~~~~~~~~~~~l~~~~~~~y~IpeGgs~p~a~~G~~~la~EI~eq~~~-g----~~~~D~Vvvp~GtGgt~aGl~~g 313 (334)
+....+..|+++. ..++....||.+++.||.+|+.. + +..||+||+|+|+|||++|++.+
T Consensus 226 --------------~a~~~~~~~~i~~-~n~~~~~~G~~t~g~Ei~eQl~~~g~~vD~~~Pd~VvvpvG~GG~~aGi~~~ 290 (442)
T 3ss7_X 226 --------------AAQSDPNCFFIDD-ENSRTLFLGYSVAGQRLKAQFAQQGRIVDADNPLFVYLPCGVGGGPGGVAFG 290 (442)
T ss_dssp --------------HHHTCTTEEECCT-TTCHHHHHHHHHHHHHHHHHHHHHTCCCBTTBCEEEEEECSSSHHHHHHHHH
T ss_pred --------------HHHhCCCceeCCC-CChHHHHHHHHHHHHHHHHHHHhhcCcccccCCCEEEEEeCCchHHHHHHHH
Confidence 1122335677755 33456789999999999998741 1 34578999999999999999999
Q ss_pred HHHc-CCCCeEEEEEeccCC
Q 019910 314 AICL-GCVPLFNTLLVKLSR 332 (334)
Q Consensus 314 ~k~l-g~~~~VigV~~~gs~ 332 (334)
++.+ +++++|+||++.+++
T Consensus 291 lk~~~~~~v~vigVep~~~~ 310 (442)
T 3ss7_X 291 LKLAFGDHVHCFFAEPTHSP 310 (442)
T ss_dssp HHHHHGGGEEEEEEEETTCC
T ss_pred HHHhcCCCCEEEEEEeCCch
Confidence 9997 899999999999875
No 27
>1v71_A Serine racemase, hypothetical protein C320.14 in chromosome III; dimer, PLP, isomerase; HET: PLP; 1.70A {Schizosaccharomyces pombe} SCOP: c.79.1.1 PDB: 1wtc_A* 2zpu_A* 2zr8_A*
Probab=99.98 E-value=7.8e-33 Score=265.12 Aligned_cols=187 Identities=17% Similarity=0.158 Sum_probs=153.0
Q ss_pred CCCcCCCCCccccCCCCeEEEEeCCCCCCCChhHHHHHHHhhhHHHH-hcCCCEEEEeCCccchHHHHHHHHHHHhCCeE
Q 019910 91 NTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLE-DHIVTDLVTCGGCQSAHATAVAVSCAERGLKS 169 (334)
Q Consensus 91 ~~Tp~l~~~~l~~~~g~~lyvKrDDl~~p~~gGnK~RkL~~lL~~a~-~~g~~~VVt~Gg~qsNh~~AvAaaaa~~Gl~~ 169 (334)
+-||++..+.+++..|.+||+|+||+| | +|+||+|++.+++..+. +++.++||+++ +|||++|+|++|+++|++|
T Consensus 25 ~~TPL~~~~~l~~~~g~~i~~K~E~~~-p-tGS~KdRga~~~i~~~~~~~~~~~vv~~s--sGN~g~alA~~a~~~G~~~ 100 (323)
T 1v71_A 25 NKTPVLTSSTVNKEFVAEVFFKCENFQ-K-MGAFKFRGALNALSQLNEAQRKAGVLTFS--SGNHAQAIALSAKILGIPA 100 (323)
T ss_dssp CCCCEECCHHHHHHHTSEEEEEEGGGS-G-GGBTHHHHHHHHHTTCCHHHHHHCEEECC--SSHHHHHHHHHHHHTTCCE
T ss_pred CCCCceEhHhhHHHhCCeEEEEecCCC-C-cCCHHHHHHHHHHHHHHHhcCCCeEEEeC--CCcHHHHHHHHHHHcCCCE
Confidence 347888877777777899999999996 6 68899999998887643 35667899875 5999999999999999999
Q ss_pred EEEeCCCCCccccchhHHHHHCC-eEEEECCCChHHHHHHHHHHHHHHhccCCCccchhhhhhhhHhhhhhhcccccchh
Q 019910 170 HLLLRGEQPQILTGYNLISTIYG-KVTYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASLTAQKSRASCLGQMD 248 (334)
Q Consensus 170 ~ivv~~~~p~~~~gn~~~~~~~G-~V~~v~~~~y~~~~~~~~~~a~~~~~~~g~~~w~~~~~~~~~~~~~~~~~~~~~~~ 248 (334)
++|||...+.. +..+++.|| +|+.++.. |+++.+.+++++
T Consensus 101 ~iv~p~~~~~~---k~~~~~~~GA~V~~~~~~-~~~~~~~a~~l~----------------------------------- 141 (323)
T 1v71_A 101 KIIMPLDAPEA---KVAATKGYGGQVIMYDRY-KDDREKMAKEIS----------------------------------- 141 (323)
T ss_dssp EEEEETTCCHH---HHHHHHHTTCEEEEECTT-TTCHHHHHHHHH-----------------------------------
T ss_pred EEECCCCCcHH---HHHHHHHcCCEEEEECCC-HHHHHHHHHHHH-----------------------------------
Confidence 99999987643 678999999 99999864 555444332211
Q ss_pred hhhccccccCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhcCCCCCCEEEEcCCchhHHHHHHHHHHHcCCCCeEEEEEe
Q 019910 249 AHKGIDNCRKKVLIVNEGAGDAVALLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGLGAICLGCVPLFNTLLV 328 (334)
Q Consensus 249 ~~~~l~~~~~~~y~IpeGgs~p~a~~G~~~la~EI~eq~~~g~~~~D~Vvvp~GtGgt~aGl~~g~k~lg~~~~VigV~~ 328 (334)
...+.+| +++ +.||....|+.+++.||.+|+ + .+|+||+|+|||||++|++.+++.+++.++||||++
T Consensus 142 ------~~~~~~~-i~~-~~n~~~~~g~~t~~~Ei~~q~--~--~~d~vv~~vG~GGt~~Gi~~~~k~~~~~~~vigve~ 209 (323)
T 1v71_A 142 ------EREGLTI-IPP-YDHPHVLAGQGTAAKELFEEV--G--PLDALFVCLGGGGLLSGSALAARHFAPNCEVYGVEP 209 (323)
T ss_dssp ------HHHTCBC-CCS-SSSHHHHHHHTHHHHHHHHHH--C--CCSEEEEECSSSHHHHHHHHHHHHHCTTCEEEEEEE
T ss_pred ------HhcCCEe-cCC-CCCcchhhhHhHHHHHHHHhc--C--CCCEEEEecCCcHHHHHHHHHHHHcCCCCEEEEEEe
Confidence 1122334 544 478999999999999999998 3 589999999999999999999999999999999999
Q ss_pred ccCC
Q 019910 329 KLSR 332 (334)
Q Consensus 329 ~gs~ 332 (334)
.++.
T Consensus 210 ~~~~ 213 (323)
T 1v71_A 210 EAGN 213 (323)
T ss_dssp GGGC
T ss_pred CCCc
Confidence 8874
No 28
>3vc3_A Beta-cyanoalnine synthase; beta-cyanoalanine synthase, transferase; HET: C6P; 1.77A {Glycine max} PDB: 3vbe_A*
Probab=99.98 E-value=1.5e-31 Score=259.47 Aligned_cols=193 Identities=13% Similarity=0.087 Sum_probs=154.0
Q ss_pred cCCCCcCCCCCccccCCCCeEEEEeCCCCCCCChhHHHHHHHhhhHHHHhcCC-----CEEEEeCCccchHHHHHHHHHH
Q 019910 89 LNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIV-----TDLVTCGGCQSAHATAVAVSCA 163 (334)
Q Consensus 89 ~~~~Tp~l~~~~l~~~~g~~lyvKrDDl~~p~~gGnK~RkL~~lL~~a~~~g~-----~~VVt~Gg~qsNh~~AvAaaaa 163 (334)
+=+.||+++.++|++..|++||+|+|++| | +|+||+|.+.+++..|.++|. ++||+++ +||||+|+|++|+
T Consensus 32 lIG~TPLv~~~~Ls~~~G~~IylK~E~ln-p-tGSfK~RgA~~~i~~a~~~g~l~~g~~~Vv~aS--sGN~g~alA~~aa 107 (344)
T 3vc3_A 32 LIGRTPLVYLNKVTEGCGAYVAVKQEMMQ-P-TASIADRPAYAMITDAEEKNLITPGKTTLIEPT--SGNMGISMAFMAA 107 (344)
T ss_dssp GSCCCCEEECCSTTTTCCSEEEEEEGGGS-T-TSBTTHHHHHHHHHHHHHTTCCCTTTCEEEEEC--SSHHHHHHHHHHH
T ss_pred hcCCCceEECcccchhhCCEEEEEecCCC-C-CCCcHHHHHHHHHHHHHHcCCCCCCCCEEEEeC--CcHHHHHHHHHHH
Confidence 34569999999999999999999999995 6 699999999999999988774 6888765 4999999999999
Q ss_pred HhCCeEEEEeCCCCCccccchhHHHHHCC-eEEEECCCChHHHHHHHHHHHHHHhccCCCccchhhhhhhhHhhhhhhcc
Q 019910 164 ERGLKSHLLLRGEQPQILTGYNLISTIYG-KVTYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASLTAQKSRAS 242 (334)
Q Consensus 164 ~~Gl~~~ivv~~~~p~~~~gn~~~~~~~G-~V~~v~~~~y~~~~~~~~~~a~~~~~~~g~~~w~~~~~~~~~~~~~~~~~ 242 (334)
++|++|+||||...|.. ++..++.|| +|+.++... ......... ++
T Consensus 108 ~~G~~~~IvmP~~~~~~---k~~~~~~~GA~Vv~v~~~~-~~~~~~~~~-~~---------------------------- 154 (344)
T 3vc3_A 108 MKGYKMVLTMPSYTSLE---RRVTMRAFGAELILTDPAK-GMGGTVKKA-YE---------------------------- 154 (344)
T ss_dssp HHTCEEEEEEETTSCHH---HHHHHHHTTCEEEEECGGG-HHHHHHHHH-HH----------------------------
T ss_pred HcCCcEEEEECCCChHH---HHHHHHHcCCEEEEECCCC-cchHHHHHH-HH----------------------------
Confidence 99999999999988764 667899999 999997532 211111110 00
Q ss_pred cccchhhhhccccccCcEEEEcCCCcchhHH-HHHHHHHHHHHHhhhcCCCCCCEEEEcCCchhHHHHHHHHHHHcCCCC
Q 019910 243 CLGQMDAHKGIDNCRKKVLIVNEGAGDAVAL-LGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGLGAICLGCVP 321 (334)
Q Consensus 243 ~~~~~~~~~~l~~~~~~~y~IpeGgs~p~a~-~G~~~la~EI~eq~~~g~~~~D~Vvvp~GtGgt~aGl~~g~k~lg~~~ 321 (334)
+....+..+++ .+..||... .|+.+++.||.+|+ + ..+|+||+|+||||+++|++.+++...|++
T Consensus 155 ----------~~~~~~~~~~~-~~~~np~~~~a~~~t~g~EI~eq~--~-~~~d~vv~~vGgGG~~~Gi~~~~k~~~p~v 220 (344)
T 3vc3_A 155 ----------LLENTPNAHML-QQFSNPANTQVHFETTGPEIWEDT--N-GQVDIFVMGIGSGGTVSGVGQYLKSKNPNV 220 (344)
T ss_dssp ----------HHHHSTTEECC-CTTTCHHHHHHHHHTHHHHHHHHT--T-TCCCEEEEECSSSHHHHHHHHHHHHHCTTC
T ss_pred ----------HHhhccCceec-cccccchhHHHHHHHHHHHHHHHh--C-CCceEEEEecCCccchHHHhhhhHhhCCCc
Confidence 01112233433 445677654 45789999999997 3 369999999999999999999999999999
Q ss_pred eEEEEEeccCC
Q 019910 322 LFNTLLVKLSR 332 (334)
Q Consensus 322 ~VigV~~~gs~ 332 (334)
+|+||++.+++
T Consensus 221 ~vigVep~~s~ 231 (344)
T 3vc3_A 221 KIYGVEPSESN 231 (344)
T ss_dssp EEEEEEEGGGC
T ss_pred eEEEEcCCCCh
Confidence 99999999875
No 29
>1o58_A O-acetylserine sulfhydrylase; TM0665, structural genomics, J protein structure initiative, joint center for structural G transferase; 1.80A {Thermotoga maritima} SCOP: c.79.1.1 PDB: 3fca_A*
Probab=99.98 E-value=7.7e-32 Score=256.29 Aligned_cols=190 Identities=15% Similarity=0.084 Sum_probs=153.9
Q ss_pred cccCCCCcCCCCCccccCCCCeEEEEeCCCCCCCChhHHHHHHHhhhHHHHhcCC--CEEEEeCCccchHHHHHHHHHHH
Q 019910 87 SFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIV--TDLVTCGGCQSAHATAVAVSCAE 164 (334)
Q Consensus 87 ~~~~~~Tp~l~~~~l~~~~g~~lyvKrDDl~~p~~gGnK~RkL~~lL~~a~~~g~--~~VVt~Gg~qsNh~~AvAaaaa~ 164 (334)
....+-||+++.+.++ .+||+|+|++| | +||||+|++.+++..+.+.|. ++||+++ +|||++|+|++|++
T Consensus 15 ~~~~~~TPL~~l~~l~----~~v~~K~E~~~-p-tGSfK~R~a~~~l~~a~~~g~~~~~vv~aS--sGN~g~a~A~aa~~ 86 (303)
T 1o58_A 15 ERLIGSTPIVRLDSID----SRIFLKLEKNN-P-GGSVKDRPALFMILDAEKRGLLKNGIVEPT--SGNMGIAIAMIGAK 86 (303)
T ss_dssp HHHSCCCCEEECTTTC----TTEEEEEGGGS-T-TSBTTHHHHHHHHHHHHHTTCCTTCEEEEC--SSHHHHHHHHHHHH
T ss_pred hhccCCCCeEECccCC----ceEEEEecCCC-C-CCChHHHHHHHHHHHHHHcCCCCCCEEEEC--chHHHHHHHHHHHH
Confidence 4456678988877665 68999999995 7 699999999999999988887 6788654 69999999999999
Q ss_pred hCCeEEEEeCCCCCccccchhHHHHHCC-eEEEECCC-ChHHHHHHHHHHHHHHhccCCCccchhhhhhhhHhhhhhhcc
Q 019910 165 RGLKSHLLLRGEQPQILTGYNLISTIYG-KVTYVPRT-HYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASLTAQKSRAS 242 (334)
Q Consensus 165 ~Gl~~~ivv~~~~p~~~~gn~~~~~~~G-~V~~v~~~-~y~~~~~~~~~~a~~~~~~~g~~~w~~~~~~~~~~~~~~~~~ 242 (334)
+|++|++|||.+.+. .+..+++.|| +|+.++.. .|++..+.+++
T Consensus 87 ~G~~~~iv~p~~~~~---~k~~~~~~~GA~V~~~~~~~~~~~~~~~a~~------------------------------- 132 (303)
T 1o58_A 87 RGHRVILTMPETMSV---ERRKVLKMLGAELVLTPGELGMKGAVEKALE------------------------------- 132 (303)
T ss_dssp HTCCEEEEEETTSCH---HHHHHHHHTTCEEEEECGGGHHHHHHHHHHH-------------------------------
T ss_pred cCCcEEEEECCCCCH---HHHHHHHHcCCEEEEECCCCCHHHHHHHHHH-------------------------------
Confidence 999999999998754 4778999999 99999853 26654333221
Q ss_pred cccchhhhhccccccCcEEEEcCCCcchhHHH-HHHHHHHHHHHhhhcCCCCCCEEEEcCCchhHHHHHHHHHHHcCCC-
Q 019910 243 CLGQMDAHKGIDNCRKKVLIVNEGAGDAVALL-GVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGLGAICLGCV- 320 (334)
Q Consensus 243 ~~~~~~~~~~l~~~~~~~y~IpeGgs~p~a~~-G~~~la~EI~eq~~~g~~~~D~Vvvp~GtGgt~aGl~~g~k~lg~~- 320 (334)
+.... +.|+ +.+..||.... ||.+++.||.+|+ ++ .+|+||||+|||||++|++.+++.++|.
T Consensus 133 ----------~~~~~-~~~~-~~~~~n~~~~~~g~~t~~~Ei~~q~--~~-~~d~vvvpvG~GG~~~Gi~~~~k~~~p~~ 197 (303)
T 1o58_A 133 ----------ISRET-GAHM-LNQFENPYNVYSHQFTTGPEILKQM--DY-QIDAFVAGVGTGGTISGVGRVLKGFFGNG 197 (303)
T ss_dssp ----------HHHHH-CCBC-CCTTTCHHHHHHHHHTHHHHHHHHT--TT-CCSEEEEECSSSHHHHHHHHHHHHHHGGG
T ss_pred ----------HHHhc-CeEe-CCCCCCHHHHHHHHHHHHHHHHHHc--CC-CCCEEEEeeCCcccHHHHHHHHHHhCCCC
Confidence 11112 2343 45678888765 7899999999998 32 4899999999999999999999999999
Q ss_pred CeEEEEEeccCCC
Q 019910 321 PLFNTLLVKLSRG 333 (334)
Q Consensus 321 ~~VigV~~~gs~~ 333 (334)
++||||++.+++.
T Consensus 198 ~~vigve~~~~~~ 210 (303)
T 1o58_A 198 VKIVAVEPAKSPV 210 (303)
T ss_dssp SEEEEEEETTSCT
T ss_pred CEEEEEecCCCcc
Confidence 9999999998853
No 30
>1v8z_A Tryptophan synthase beta chain 1; beta+alpha, riken structural genomics/proteomics initiative, structural genomics, lyase; HET: PLP; 2.21A {Pyrococcus furiosus} SCOP: c.79.1.1 PDB: 1wdw_B*
Probab=99.97 E-value=1.8e-32 Score=268.23 Aligned_cols=241 Identities=13% Similarity=0.020 Sum_probs=171.8
Q ss_pred CcCCCCceeeeccChHHHHHHHhh-hhhhccCCCCceeecccccccccCCCCCCCcccccCCC-CcCCCCCccccCCC-C
Q 019910 31 LSNSPQGICNVRMSGEELLSRLLD-RKWALTSPDSKIHQIKLFTTTEKHGGGPLGGISFLNNT-CPFLGDDMIMRDED-R 107 (334)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~p~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~-Tp~l~~~~l~~~~g-~ 107 (334)
+++.++|.|.||.+... +..+.+ .+.+.+.|. +.. .++. -+.-.-+. ||++..++|++..| .
T Consensus 2 ~~~~~gg~~~p~~~~~~-~~~i~~a~~~~~~~~~--~~~--~~~~----------~~~~~ig~~TPL~~~~~l~~~~g~~ 66 (388)
T 1v8z_A 2 WFGEFGGQYVPETLIEP-LKELEKAYKRFKDDEE--FNR--QLNY----------YLKTWAGRPTPLYYAKRLTEKIGGA 66 (388)
T ss_dssp EETTEECCCCCHHHHHH-HHHHHHHHHHHHTCHH--HHH--HHHH----------HHHHTTCCSCCEEECHHHHHHHTSS
T ss_pred CccCcCCEeCCHHHHHH-HHHHHHHHHHhhcChH--HHH--HHHH----------HHHHhcCCCCCceehHhhHhhcCCc
Confidence 46788999999987754 334443 456655433 222 1111 00111222 88888877777775 8
Q ss_pred eEEEEeCCCCCCCChhHHHHHHHhhhHHHHhcCCCEEEE-eCCccchHHHHHHHHHHHhCCeEEEEeCCCCCccccchhH
Q 019910 108 CFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIVTDLVT-CGGCQSAHATAVAVSCAERGLKSHLLLRGEQPQILTGYNL 186 (334)
Q Consensus 108 ~lyvKrDDl~~p~~gGnK~RkL~~lL~~a~~~g~~~VVt-~Gg~qsNh~~AvAaaaa~~Gl~~~ivv~~~~p~~~~gn~~ 186 (334)
+||+|+|++| | +|+||+|++.+++..+.++|.++||+ +++ |||++|+|++|+++|++|+||||....+....|+.
T Consensus 67 ~i~~K~E~~~-p-tGSfK~R~a~~~i~~a~~~g~~~vv~~~ss--GN~g~a~A~aa~~~G~~~~iv~p~~~~~~~~~~~~ 142 (388)
T 1v8z_A 67 KIYLKREDLV-H-GGAHKTNNAIGQALLAKFMGKTRLIAETGA--GQHGVATAMAGALLGMKVDIYMGAEDVERQKMNVF 142 (388)
T ss_dssp EEEEEEGGGS-T-TSBTHHHHHHHHHHHHHHTTCCEEEEEESS--SHHHHHHHHHHHHTTCEEEEEEEHHHHTTCHHHHH
T ss_pred eEEEEeccCC-C-CCCHHHHHHHHHHHHHHHcCCCEEEEecCc--hHHHHHHHHHHHHcCCcEEEEEcCCchhhhhhHHH
Confidence 9999999995 7 68899999999888888899999886 444 89999999999999999999999742222234678
Q ss_pred HHHHCC-eEEEECCC--ChHHHHHHHHHHHHHHhccCCCccchhhhhhhhHhhhhhhcccccchhhhhccccccCcEEEE
Q 019910 187 ISTIYG-KVTYVPRT--HYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASLTAQKSRASCLGQMDAHKGIDNCRKKVLIV 263 (334)
Q Consensus 187 ~~~~~G-~V~~v~~~--~y~~~~~~~~~~a~~~~~~~g~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~I 263 (334)
+++.|| +|+.++.+ .|++..+...+ .+..+.++.+++
T Consensus 143 ~~~~~GA~V~~~~~~~~~~~~a~~~a~~----------------------------------------~~~~~~~~~~~~ 182 (388)
T 1v8z_A 143 RMKLLGANVIPVNSGSRTLKDAINEALR----------------------------------------DWVATFEYTHYL 182 (388)
T ss_dssp HHHHTTCEEEEECSTTSSHHHHHHHHHH----------------------------------------HHHHHTTTEEEC
T ss_pred HHHHCCCEEEEECCCCCCHHHHHHHHHH----------------------------------------HHHHhCCCceEe
Confidence 899999 99999752 46643322110 011223344556
Q ss_pred cCCCcc--hhH--HH-HHHHHHHHHHHhhhc-CCCCCCEEEEcCCchhHHHHHHHHHHHcCCCCeEEEEEeccC
Q 019910 264 NEGAGD--AVA--LL-GVFRLLQYLSQDHLL-GRKRAIKFVVDAGTGTTAVGLGLGAICLGCVPLFNTLLVKLS 331 (334)
Q Consensus 264 peGgs~--p~a--~~-G~~~la~EI~eq~~~-g~~~~D~Vvvp~GtGgt~aGl~~g~k~lg~~~~VigV~~~gs 331 (334)
+.++.| |.. .. |+.+++.||.+|+.. .+..+|+||+|+|||||++|++.+++ .++.++||||++.++
T Consensus 183 ~~~~~n~~p~~~~~~~~~~t~~~Ei~~q~~~~~~~~~d~vvvpvG~GG~~aGi~~~~~-~~~~~~vigve~~~~ 255 (388)
T 1v8z_A 183 IGSVVGPHPYPTIVRDFQSVIGREAKAQILEAEGQLPDVIVACVGGGSNAMGIFYPFV-NDKKVKLVGVEAGGK 255 (388)
T ss_dssp CCSSCSSTTHHHHHHHHHHHHHHHHHHHHHHHHSSCCSEEEEECSSSHHHHHHHGGGT-TCTTSEEEEEEEEET
T ss_pred cCCccCCCCchhHHHHHhHHHHHHHHHHHHHhcCCCCCEEEEecCccHhHHHHHHHHh-hCCCceEEEEccCcc
Confidence 666543 332 23 788899999999731 12358999999999999999999988 489999999999986
No 31
>4d9i_A Diaminopropionate ammonia-lyase; fold type II PLP-dependent enzyme, tryptophan synthase beta like PLP-dependent enzymes superfamily; HET: IT1; 2.00A {Escherichia coli} PDB: 4d9g_A* 4d9n_A* 4d9k_A* 4d9m_A*
Probab=99.97 E-value=2.2e-31 Score=262.54 Aligned_cols=191 Identities=12% Similarity=0.008 Sum_probs=151.3
Q ss_pred CcCCCCCccccCCC-CeEEEEeCCCCCCCChhHHHHHHHhhhHHHH--h----------------cCCC-EEEEeCCccc
Q 019910 93 CPFLGDDMIMRDED-RCFYVVRDDLLHPLVNGNKARKMDALLPLLE--D----------------HIVT-DLVTCGGCQS 152 (334)
Q Consensus 93 Tp~l~~~~l~~~~g-~~lyvKrDDl~~p~~gGnK~RkL~~lL~~a~--~----------------~g~~-~VVt~Gg~qs 152 (334)
||++..+.|++..| .+||+|+|++++| +||||+|++.+++..+. + .+.+ +||+.+ +|
T Consensus 45 TPL~~~~~l~~~~g~~~i~~K~E~~~~p-tgSfK~Rga~~~i~~~~~~~~G~~~~~l~~e~l~~~~~~~~~vv~aS--sG 121 (398)
T 4d9i_A 45 TPLCALDDLANLFGVKKILVKDESKRFG-LNAFXMLGGAYAIAQLLCEKYHLDIETLSFEHLKNAIGEKMTFATTT--DG 121 (398)
T ss_dssp CCEEECHHHHHHHTSSEEEEEEGGGSTT-TTBSTHHHHHHHHHHHHHHHHTCCGGGCCHHHHHHCCSCCCEEEEEC--SS
T ss_pred CCceehHHHHHHhCCCcEEEEECCCCCC-CCcchhhhhHHHHHHHHHHhhcccccccchhhhhhhccCCCEEEEEC--CC
Confidence 67777777777778 5999999999767 69999999999998773 2 4567 899743 69
Q ss_pred hHHHHHHHHHHHhCCeEEEEeCCCCCccccchhHHHHHCC-eEEEECCCChHHHHHHHHHHHHHHhccCCCccchhhhhh
Q 019910 153 AHATAVAVSCAERGLKSHLLLRGEQPQILTGYNLISTIYG-KVTYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEIFE 231 (334)
Q Consensus 153 Nh~~AvAaaaa~~Gl~~~ivv~~~~p~~~~gn~~~~~~~G-~V~~v~~~~y~~~~~~~~~~a~~~~~~~g~~~w~~~~~~ 231 (334)
||++|+|++|+++|++|+||||...+. .+..+++.|| +|+.++. .|+++.+.+++++
T Consensus 122 Nhg~a~A~aa~~~G~~~~iv~p~~~~~---~k~~~~~~~GA~Vv~v~~-~~~~a~~~a~~~~------------------ 179 (398)
T 4d9i_A 122 NHGRGVAWAAQQLGQNAVIYMPKGSAQ---ERVDAILNLGAECIVTDM-NYDDTVRLTMQHA------------------ 179 (398)
T ss_dssp HHHHHHHHHHHHHTCEEEEEECTTCCH---HHHHHHHTTTCEEEECSS-CHHHHHHHHHHHH------------------
T ss_pred HHHHHHHHHHHHcCCCEEEEEeCCCCH---HHHHHHHHcCCEEEEECC-CHHHHHHHHHHHH------------------
Confidence 999999999999999999999998764 3677899999 9999986 5876544432211
Q ss_pred hhHhhhhhhcccccchhhhhccccccCcEEEEcC----CCc--chhHHHHHHHHHHHHHHhhhcCCCCCCEEEEcCCchh
Q 019910 232 ASLTAQKSRASCLGQMDAHKGIDNCRKKVLIVNE----GAG--DAVALLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGT 305 (334)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~Ipe----Ggs--~p~a~~G~~~la~EI~eq~~~g~~~~D~Vvvp~GtGg 305 (334)
... ..|+++. |+. ++....||.+++.||.+|+......||+||||+||||
T Consensus 180 -----------------------~~~-g~~~v~~~~~~g~~~~~~~~~~G~~t~~~Ei~~q~~~~g~~~d~vvvpvG~GG 235 (398)
T 4d9i_A 180 -----------------------QQH-GWEVVQDTAWEGYTKIPTWIMQGYATLADEAVEQMREMGVTPTHVLLQAGVGA 235 (398)
T ss_dssp -----------------------HHH-TCEECCSSCBTTBCHHHHHHHHHHHHHHHHHHHHHHHTTCCCSEEEEECSSSH
T ss_pred -----------------------HHc-CCEEecCcccCCcCCCCchhhhhHHHHHHHHHHHhhhcCCCCCEEEEecCccH
Confidence 112 2355553 444 3788999999999999998421134899999999999
Q ss_pred HHHHHHHHHHHc--CCCCeEEEEEeccCC
Q 019910 306 TAVGLGLGAICL--GCVPLFNTLLVKLSR 332 (334)
Q Consensus 306 t~aGl~~g~k~l--g~~~~VigV~~~gs~ 332 (334)
|++|++.+++.+ .+.++||||++.++.
T Consensus 236 ~~aGi~~~~k~~~~~~~~~vigVep~~~~ 264 (398)
T 4d9i_A 236 MAGGVLGYLVDVYSPQNLHSIIVEPDKAD 264 (398)
T ss_dssp HHHHHHHHHHHHHCTTSCEEEEEEETTSC
T ss_pred HHHHHHHHHHHhcCCCCCEEEEEEeCCCc
Confidence 999999999776 478999999998874
No 32
>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A*
Probab=99.97 E-value=4.5e-31 Score=268.53 Aligned_cols=196 Identities=15% Similarity=0.084 Sum_probs=156.9
Q ss_pred cCCCCcCCCCCccccCCC--CeEEEEeCCCCCCCChhHHHHHHHhhhHHHHhcCC----CEEEEeCCccchHHHHHHHHH
Q 019910 89 LNNTCPFLGDDMIMRDED--RCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIV----TDLVTCGGCQSAHATAVAVSC 162 (334)
Q Consensus 89 ~~~~Tp~l~~~~l~~~~g--~~lyvKrDDl~~p~~gGnK~RkL~~lL~~a~~~g~----~~VVt~Gg~qsNh~~AvAaaa 162 (334)
.-+-||++..++|++..| ++||+|+|++| | +||||+|++.+++..|.+.|. ++||+++ +||||+|+|++|
T Consensus 57 ~ig~TPl~~l~~l~~~~g~~~~i~~K~E~~~-p-tGS~K~R~a~~~i~~a~~~g~~~~g~~vv~~s--sGN~g~a~A~~a 132 (527)
T 3pc3_A 57 VIGCTPLVKLNNIPASDGIECEMYAKCEFLN-P-GGSVKDRIGYRMVQDAEEQGLLKPGYTIIEPT--SGNTGIGLAMAC 132 (527)
T ss_dssp GSSCCCEEECCSHHHHTTCCSEEEEEEGGGS-T-TSBTTHHHHHHHHHHHHHHTCCCTTCEEEEEC--SSHHHHHHHHHH
T ss_pred hcCCCCcEEcchhhhhcCCCcEEEEEeccCC-C-CCCHHHHHHHHHHHHHHHcCCCCCCCEEEEeC--CCHHHHHHHHHH
Confidence 345599999988888777 79999999996 6 599999999999999999998 7898754 699999999999
Q ss_pred HHhCCeEEEEeCCCCCccccchhHHHHHCC-eEEEECCC-ChHHHHHHHHHHHHHHhccCCCccchhhhhhhhHhhhhhh
Q 019910 163 AERGLKSHLLLRGEQPQILTGYNLISTIYG-KVTYVPRT-HYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASLTAQKSR 240 (334)
Q Consensus 163 a~~Gl~~~ivv~~~~p~~~~gn~~~~~~~G-~V~~v~~~-~y~~~~~~~~~~a~~~~~~~g~~~w~~~~~~~~~~~~~~~ 240 (334)
+++|++|+||||...+. .+..+++.|| +|+.++.. .|++.+.+.+ .|+
T Consensus 133 ~~~G~~~~iv~p~~~~~---~k~~~~~~~GA~v~~~~~~~~~~~~~~~~~-~a~-------------------------- 182 (527)
T 3pc3_A 133 AVKGYKCIIVMPEKMSN---EKVSALRTLGAKIIRTPTEAAYDSPEGLIY-VAQ-------------------------- 182 (527)
T ss_dssp HHHTCEEEEEEETTSCH---HHHHHHHHTTCEEEEECTTSCTTSTTSHHH-HHH--------------------------
T ss_pred HHhCCeEEEEEcCCCCH---HHHHHHHHCCCEEEEeCCCCCcccHHHHHH-HHH--------------------------
Confidence 99999999999998765 4678999999 99999853 4653222211 111
Q ss_pred cccccchhhhhccccccCcEEEEcCCCcchh-HHHHHHHHHHHHHHhhhcCCCCCCEEEEcCCchhHHHHHHHHHHHcCC
Q 019910 241 ASCLGQMDAHKGIDNCRKKVLIVNEGAGDAV-ALLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGLGAICLGC 319 (334)
Q Consensus 241 ~~~~~~~~~~~~l~~~~~~~y~IpeGgs~p~-a~~G~~~la~EI~eq~~~g~~~~D~Vvvp~GtGgt~aGl~~g~k~lg~ 319 (334)
++....+..|++ .+..||. ...||.+++.||.+|+. ..+|+||+|+|||||++|++.+++...|
T Consensus 183 -----------~~~~~~~~~~~~-~~~~n~~n~~~g~~t~~~Ei~~q~~---~~~d~vv~~vG~GG~~~G~~~~~k~~~p 247 (527)
T 3pc3_A 183 -----------QLQRETPNSIVL-DQYRNAGNPLAHYDGTAAEILWQLD---NKVDMIVVSAGTAGTISGIGRKIKEQVP 247 (527)
T ss_dssp -----------HHHHHSSSEECC-CTTTCTHHHHHHHHTHHHHHHHHTT---TCCSEEEEECSSSHHHHHHHHHHHHHCT
T ss_pred -----------HHHHhCCCcEec-CCCCCcchHHHHHHHHHHHHHHhcC---CCCCEEEEecCccHHHHHHHHHHHHhCC
Confidence 122223344544 4445654 45689999999999973 2589999999999999999999999999
Q ss_pred CCeEEEEEeccCCC
Q 019910 320 VPLFNTLLVKLSRG 333 (334)
Q Consensus 320 ~~~VigV~~~gs~~ 333 (334)
.++||||++.++..
T Consensus 248 ~~~vigve~~~~~~ 261 (527)
T 3pc3_A 248 SCQIVGVDPYGSIL 261 (527)
T ss_dssp TSEEEEEEETTCCC
T ss_pred CCEEEEEecCCccc
Confidence 99999999999863
No 33
>2o2e_A Tryptophan synthase beta chain; amino-acid biosynthesis, tryptophan biosynthesis, structural genomics; 2.20A {Mycobacterium tuberculosis} PDB: 2o2j_A
Probab=99.97 E-value=1.7e-31 Score=265.61 Aligned_cols=247 Identities=13% Similarity=0.064 Sum_probs=162.7
Q ss_pred ccCCCCcCC---CCceeeeccChHHHHHHHhh-hhhhccCCCCceeec-ccccccccCCCCCCCcccccCCCCcCCCCCc
Q 019910 26 SASGQLSNS---PQGICNVRMSGEELLSRLLD-RKWALTSPDSKIHQI-KLFTTTEKHGGGPLGGISFLNNTCPFLGDDM 100 (334)
Q Consensus 26 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~-~~~~~~~p~~~~~~~-~ll~~~~~~~~~~~~~~~~~~~~Tp~l~~~~ 100 (334)
.+..+++|. |+|.|.||.+...+ ..+.. .+.+.+.|.+ +... .++.. ..++ =||++..++
T Consensus 25 ~~~~~~~~~~~~~gg~~~pe~~~~~~-~~i~~a~~~~~~~~~~-~~~~~~~~~~----~~g~---------~TPL~~~~~ 89 (422)
T 2o2e_A 25 PDSGGHFGGPSGWGGRYVPEALMAVI-EEVTAAYQKERVSQDF-LDDLDRLQAN----YAGR---------PSPLYEATR 89 (422)
T ss_dssp ----------------CCCGGGHHHH-HHHHHHHHHHHTSTHH-HHHHHHHTTT----TSSC---------SCCEEECGG
T ss_pred CCcCCCCCCCCCcCCccCCHHHHHHH-HHHHHHHHHHhcCcHH-HHHHHHHHHH----hCCC---------CCCeEEChh
Confidence 467789999 99999999985553 33443 3566665554 2221 22221 1222 277777777
Q ss_pred cccCC-CCeEEEEeCCCCCCCChhHHHHHHHhhhHHHHhcCCCEEEEeCCccchHHHHHHHHHHHhCCeEEEEeCCCCCc
Q 019910 101 IMRDE-DRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIVTDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGEQPQ 179 (334)
Q Consensus 101 l~~~~-g~~lyvKrDDl~~p~~gGnK~RkL~~lL~~a~~~g~~~VVt~Gg~qsNh~~AvAaaaa~~Gl~~~ivv~~~~p~ 179 (334)
|++.. +.+||+||||+| | +|+||+|.+.+.+..+++.|.+++|++.| .|||++|+|++|+++|++|+||||...++
T Consensus 90 Ls~~~gg~~i~lK~E~ln-p-tGSfK~R~a~~~~~~a~~~g~~~vI~~~s-sGNhG~A~A~aaa~~G~~~~I~mp~~~~~ 166 (422)
T 2o2e_A 90 LSQHAGSARIFLKREDLN-H-TGSHKINNVLGQALLARRMGKTRVIAETG-AGQHGVATATACALLGLDCVIYMGGIDTA 166 (422)
T ss_dssp GGGGTTTCEEEEECGGGC-C-SSTTHHHHHHHHHHHHHHTTCCEEEEEES-SSHHHHHHHHHHHHHTCEEEEEEEHHHHH
T ss_pred hHhhcCCCeEEEEEcCCC-C-CCcHHHHHHHHHHHHHHHcCCCeEEEecC-ccHHHHHHHHHHHHcCCcEEEEeCCCcch
Confidence 77776 589999999996 5 68999999988888888899988886433 39999999999999999999999985433
Q ss_pred cccchhHHHHHCC-eEEEECCC--ChHHHHHHHHHHHHHHhccCCCccchhhhhhhhHhhhhhhcccccchhhhhccccc
Q 019910 180 ILTGYNLISTIYG-KVTYVPRT--HYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASLTAQKSRASCLGQMDAHKGIDNC 256 (334)
Q Consensus 180 ~~~gn~~~~~~~G-~V~~v~~~--~y~~~~~~~~~~a~~~~~~~g~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 256 (334)
....|+..++.|| +|+.++.+ .|++....... .| ...
T Consensus 167 ~q~~kv~~~~~~GA~Vv~v~~~~~~~~da~~~a~~------------~~----------------------------~~~ 206 (422)
T 2o2e_A 167 RQALNVARMRLLGAEVVAVQTGSKTLKDAINEAFR------------DW----------------------------VAN 206 (422)
T ss_dssp HSHHHHHHHHHTTCEEEEECSTTSCHHHHHHHHHH------------HH----------------------------HHH
T ss_pred hhHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHH------------HH----------------------------Hhc
Confidence 2345778999999 99999752 56643222110 11 112
Q ss_pred cCc-EEEEcCC-CcchhH--H-HHHHHHHHHHHHhhhc-CCCCCCEEEEcCCchhHHHHHHHHHHHcCCCCeEEEEEecc
Q 019910 257 RKK-VLIVNEG-AGDAVA--L-LGVFRLLQYLSQDHLL-GRKRAIKFVVDAGTGTTAVGLGLGAICLGCVPLFNTLLVKL 330 (334)
Q Consensus 257 ~~~-~y~IpeG-gs~p~a--~-~G~~~la~EI~eq~~~-g~~~~D~Vvvp~GtGgt~aGl~~g~k~lg~~~~VigV~~~g 330 (334)
..+ .|+++.. +++|.. . .|+.+++.||.+|+.. ....||+||+|+|+||+++|++.+++. ++.++||||++.+
T Consensus 207 ~~~~~yi~~s~~g~~p~~~~v~~~q~t~g~Ei~~Ql~~~~~~~pD~vvvpvG~GG~~~Gi~~~~~~-~p~v~vigVe~~g 285 (422)
T 2o2e_A 207 ADNTYYCFGTAAGPHPFPTMVRDFQRIIGMEARVQIQGQAGRLPDAVVACVGGGSNAIGIFHAFLD-DPGVRLVGFEAAG 285 (422)
T ss_dssp TTTEEECCCCSSSCCCCHHHHHHHTTHHHHHHHHHHHHHSSSCCSEEEEEGGGHHHHHTTSGGGTT-CTTCEEEEEEECC
T ss_pred CCCcEEEeCCccCCCCcHHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEccCCchhHHHHHHHHhc-CCCCeEEEEecCC
Confidence 223 4444332 234432 2 2678899999988731 123589999999999999999888854 8999999999998
Q ss_pred C
Q 019910 331 S 331 (334)
Q Consensus 331 s 331 (334)
+
T Consensus 286 ~ 286 (422)
T 2o2e_A 286 D 286 (422)
T ss_dssp -
T ss_pred C
Confidence 6
No 34
>1jbq_A B, cystathionine beta-synthase, serine sulfhydrase; fold type II of PLP enzymes, lyase; HET: HEM PLP; 2.60A {Homo sapiens} SCOP: c.79.1.1 PDB: 1m54_A*
Probab=99.97 E-value=1.3e-30 Score=260.56 Aligned_cols=197 Identities=12% Similarity=0.014 Sum_probs=152.9
Q ss_pred cccCCCCcCCCCCccccCCC--CeEEEEeCCCCCCCChhHHHHHHHhhhHHHHhcCC----CEEEEeCCccchHHHHHHH
Q 019910 87 SFLNNTCPFLGDDMIMRDED--RCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIV----TDLVTCGGCQSAHATAVAV 160 (334)
Q Consensus 87 ~~~~~~Tp~l~~~~l~~~~g--~~lyvKrDDl~~p~~gGnK~RkL~~lL~~a~~~g~----~~VVt~Gg~qsNh~~AvAa 160 (334)
.-..+-||+++.+.|++..| .+||+|+|++| | +|+||+|++.+++.+|.+.|. ++||++++ |||++|+|+
T Consensus 103 ~~~ig~TPLv~l~~Ls~~~G~~~~v~lK~E~~n-p-tGSfKdR~a~~~i~~a~~~G~l~~g~tVV~aSs--GN~G~AlA~ 178 (435)
T 1jbq_A 103 LKKIGDTPMVRINKIGKKFGLKCELLAKCEFFN-A-GGSVKDRISLRMIEDAERDGTLKPGDTIIEPTS--GNTGIGLAL 178 (435)
T ss_dssp GGGSSCCCEEECCSHHHHTTCCSEEEEEEGGGS-T-TSBTHHHHHHHHHHHHHHHTCSCTTCEEEEECS--SHHHHHHHH
T ss_pred HhhCCCCCeEECcchhhHhCCCceEEEEECCCC-C-cCCHHHHHHHHHHHHHHHcCCCCCCCEEEEeCC--CHHHHHHHH
Confidence 33556799999988888777 69999999995 7 688999999999999998886 68887654 899999999
Q ss_pred HHHHhCCeEEEEeCCCCCccccchhHHHHHCC-eEEEECCC-ChHHHHHHHHHHHHHHhccCCCccchhhhhhhhHhhhh
Q 019910 161 SCAERGLKSHLLLRGEQPQILTGYNLISTIYG-KVTYVPRT-HYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASLTAQK 238 (334)
Q Consensus 161 aaa~~Gl~~~ivv~~~~p~~~~gn~~~~~~~G-~V~~v~~~-~y~~~~~~~~~~a~~~~~~~g~~~w~~~~~~~~~~~~~ 238 (334)
+|+++|++|+||||...+.. +..+++.|| +|+.++.. .|++.+...+
T Consensus 179 aaa~~Gi~~~IvmP~~~s~~---k~~~l~~~GAeVv~v~~~~~~d~~~~~~~---------------------------- 227 (435)
T 1jbq_A 179 AAAVRGYRCIIVMPEKMSSE---KVDVLRALGAEIVRTPTNARFDSPESHVG---------------------------- 227 (435)
T ss_dssp HHHHHTCEEEEEECSCCCHH---HHHHHHHTTCEEEECCC-------CCHHH----------------------------
T ss_pred HHHHcCCeEEEEeCCCCCHH---HHHHHHhCCCEEEEecCCCCcchHHHHHH----------------------------
Confidence 99999999999999987643 678999999 99999853 4554221111
Q ss_pred hhcccccchhhhhccccccCcEEEEcCCCcchhH-HHHHHHHHHHHHHhhhcCCCCCCEEEEcCCchhHHHHHHHHHHHc
Q 019910 239 SRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVA-LLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGLGAICL 317 (334)
Q Consensus 239 ~~~~~~~~~~~~~~l~~~~~~~y~IpeGgs~p~a-~~G~~~la~EI~eq~~~g~~~~D~Vvvp~GtGgt~aGl~~g~k~l 317 (334)
.+.++....++.|++++ ..|+.. ..||.+++.||.+|+ + ..+|+||+|+|||||++|++.+++..
T Consensus 228 ----------~a~~la~~~~~~~~i~q-~~n~~n~~ag~~t~a~EI~eQl--~-~~~D~vVvpvGtGGtlaGi~~~lk~~ 293 (435)
T 1jbq_A 228 ----------VAWRLKNEIPNSHILDQ-YRNASNPLAHYDTTADEILQQC--D-GKLDMLVASVGTGGTITGIARKLKEK 293 (435)
T ss_dssp ----------HHHHHHHHSTTEECCCT-TTCTHHHHHHHHTHHHHHHHHH--T-TCCCEEEEECSSSHHHHHHHHHHHHH
T ss_pred ----------HHHHHHHhcCCeEEeCc-cCCcccHHHHHHHHHHHHHHHc--C-CCCCEEEEecCCcHhHHHHHHHHHHh
Confidence 01112223445676642 233322 346889999999998 3 25899999999999999999999999
Q ss_pred CCCCeEEEEEeccCC
Q 019910 318 GCVPLFNTLLVKLSR 332 (334)
Q Consensus 318 g~~~~VigV~~~gs~ 332 (334)
.|.++||||++.++.
T Consensus 294 ~p~vrVigVep~gs~ 308 (435)
T 1jbq_A 294 CPGCRIIGVDPEGSI 308 (435)
T ss_dssp CTTCEEEEEEETTCS
T ss_pred CCCCEEEEEecCCch
Confidence 999999999999884
No 35
>1wkv_A Cysteine synthase; homodimer, open alpha/beta folding, transferase; HET: PLP; 2.00A {Aeropyrum pernix} SCOP: c.79.1.1
Probab=99.97 E-value=9.9e-31 Score=257.96 Aligned_cols=233 Identities=9% Similarity=-0.001 Sum_probs=166.6
Q ss_pred CCCcC---CCCceeee--ccChHHHHHHHhhhhhh--ccCCCCceeecccccccccCCCCCCCcccccC--CCCcCCCCC
Q 019910 29 GQLSN---SPQGICNV--RMSGEELLSRLLDRKWA--LTSPDSKIHQIKLFTTTEKHGGGPLGGISFLN--NTCPFLGDD 99 (334)
Q Consensus 29 ~~~~~---~~~~~~~~--~~~~~~~~~~~~~~~~~--~~~p~~~~~~~~ll~~~~~~~~~~~~~~~~~~--~~Tp~l~~~ 99 (334)
.++++ .|+|-++| |-+.+.+ ..|. .|. .+.|. .+.. + .++.. .-||++..+
T Consensus 44 ~~~~~~~~~~g~~~~~~~~~~~~~~-~~l~--~~~~~~~~~~-~~~~--~--------------~~~~g~~~~TPL~~l~ 103 (389)
T 1wkv_A 44 PEYVKALYVIGASRIPVGDGCSHTL-EELG--VFDISVPGEM-VFPS--P--------------LDFFERGKPTPLVRSR 103 (389)
T ss_dssp HHHHHHHHHHTCSEEEBSSSCEEET-TTTT--TTCCCSCTTC-EESS--H--------------HHHHHHSCSCCEEECC
T ss_pred cCccCchHHhCceeecCcHHHHHHH-HHHH--hHHHhcCChH-HHHH--H--------------HHHhCCCCCCCeEEcc
Confidence 35677 88999995 8777653 4333 132 23332 1111 1 12222 227777777
Q ss_pred ccccCCCCeEEEEeCCCCCCCChhHHHHHHHhhhHH---HHhcCCCEEEEeCCccchHHHHHHHHHHHhCCeEEEEeCCC
Q 019910 100 MIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPL---LEDHIVTDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGE 176 (334)
Q Consensus 100 ~l~~~~g~~lyvKrDDl~~p~~gGnK~RkL~~lL~~---a~~~g~~~VVt~Gg~qsNh~~AvAaaaa~~Gl~~~ivv~~~ 176 (334)
+|++. |.+||+||||+| |.+|+||+|++.+++.. +++.| ++||+.+ +|||++|+|++|+++|++|+||||.+
T Consensus 104 ~Ls~~-g~~IylK~E~ln-p~tGS~K~R~a~~~i~~l~~a~~~g-~~Iv~as--sGNhG~AlA~aaa~~Gl~~~ivmp~~ 178 (389)
T 1wkv_A 104 LQLPN-GVRVWLKLEWYN-PFSLSVKDRPAVEIISRLSRRVEKG-SLVADAT--SSNFGVALSAVARLYGYRARVYLPGA 178 (389)
T ss_dssp CCCST-TEEEEEEEGGGS-TTTSBTTHHHHHHHHHHHTTTSCTT-CEEEEEC--CHHHHHHHHHHHHHTTCEEEEEEETT
T ss_pred ccccC-CCeEEEEEcCCC-CCcCChHHHHHHHHHHHHHHHHhcC-CEEEEEC--CcHHHHHHHHHHHHcCCeEEEEECCC
Confidence 77765 789999999995 63578999999999988 66677 7788544 69999999999999999999999998
Q ss_pred CCccccchhHHHHHCC-eEE-EECCCChHHHHHHHHHHHHHHhccCCCccchhhhhhhhHhhhhhhcccccchhhhhccc
Q 019910 177 QPQILTGYNLISTIYG-KVT-YVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASLTAQKSRASCLGQMDAHKGID 254 (334)
Q Consensus 177 ~p~~~~gn~~~~~~~G-~V~-~v~~~~y~~~~~~~~~~a~~~~~~~g~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 254 (334)
.+. .+..+++.|| +|+ .++.++|++..+.+.+ +.
T Consensus 179 ~~~---~k~~~~~~~GAeVv~~v~~~~~~da~~~a~~-----------------------------------------~~ 214 (389)
T 1wkv_A 179 AEE---FGKLLPRLLGAQVIVDPEAPSTVHLLPRVMK-----------------------------------------DS 214 (389)
T ss_dssp SCH---HHHHHHHHTTCEEEEETTCSSSGGGHHHHHH-----------------------------------------HH
T ss_pred CCH---HHHHHHHHcCCEEEEEcCCCCHHHHHHHHHH-----------------------------------------HH
Confidence 754 3667999999 999 7875567754333221 11
Q ss_pred cccCcEEEEcCCCcchhH-HHHHHHHHHHHHHhhhcCCCCCCEEEEcCCchhHHHHHHHHHHHcCCCCeEEEEEeccCC
Q 019910 255 NCRKKVLIVNEGAGDAVA-LLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGLGAICLGCVPLFNTLLVKLSR 332 (334)
Q Consensus 255 ~~~~~~y~IpeGgs~p~a-~~G~~~la~EI~eq~~~g~~~~D~Vvvp~GtGgt~aGl~~g~k~lg~~~~VigV~~~gs~ 332 (334)
...+..|+.|. .||.. ..|+.+++.||.+|+...+..||+||+|+|||||++|++.+++.+++.++||||++.++.
T Consensus 215 ~~~g~~~~~p~--~N~~~~~~~~~t~g~Ei~~Q~~~~g~~~D~vv~~vG~GG~~~Gi~~~~k~~~p~vrvigVe~~~~~ 291 (389)
T 1wkv_A 215 KNEGFVHVNQF--YNDANFEAHMRGTAREIFVQSRRGGLALRGVAGSLGTSGHMSAAAFYLQSVDPSIRAVLVQPAQGD 291 (389)
T ss_dssp HHHCCEECCTT--TCHHHHHHHHHTHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHCTTCEEEEEEECTTC
T ss_pred HccCcEecCcC--CChHHHHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCchHhHHHHHHHHHHhCCCCeEEEEecCCCC
Confidence 11123343333 24433 345677999999998532346999999999999999999999999999999999998753
No 36
>1e5x_A Threonine synthase; threonine biosynthesis, PLP enzyme, S-adenosyl-methionine, allostery; 2.25A {Arabidopsis thaliana} SCOP: c.79.1.1 PDB: 2c2b_A* 2c2g_A*
Probab=99.97 E-value=4.9e-30 Score=259.46 Aligned_cols=240 Identities=13% Similarity=0.100 Sum_probs=177.2
Q ss_pred CCCceeeeccChHHH-------HHHHhh-hhhhccCC--CCceeecccc-cccccCCCCCCCcccccCCCCcCCCCCccc
Q 019910 34 SPQGICNVRMSGEEL-------LSRLLD-RKWALTSP--DSKIHQIKLF-TTTEKHGGGPLGGISFLNNTCPFLGDDMIM 102 (334)
Q Consensus 34 ~~~~~~~~~~~~~~~-------~~~~~~-~~~~~~~p--~~~~~~~~ll-~~~~~~~~~~~~~~~~~~~~Tp~l~~~~l~ 102 (334)
.-+|.+.|+...+.+ .+.+.+ +......| ...|+|.+++ |. ......++...+.||++..++|+
T Consensus 66 ~~ggl~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~y~e~l~p~-----~~~~~iv~l~~g~TPLv~l~~L~ 140 (486)
T 1e5x_A 66 RSGGLLDVEHDMEALKRFDGAYWRDLFDSRVGKSTWPYGSGVWSKKEWVLPE-----IDDDDIVSAFEGNSNLFWAERFG 140 (486)
T ss_dssp ---CBEEEEECHHHHHTSCHHHHHHHHHTTTTCCCTTTTSTTGGGGGGTCTT-----CCGGGCCCCCCCCCCEEECHHHH
T ss_pred CCCCEEEEEecccccCcCCHHHHHHHHHhhhhhhcccccccceeHHhhcCCc-----ccccccccccCCCCCcEECcccc
Confidence 346888888755432 121111 11111122 2579888988 75 22112345668889999998888
Q ss_pred cC-CC-CeEEEEeCCCCCCCChhHHHHHHHhhhHHHHhc-----CCCEEEEeCCccchHHHHHHHHHHHhCCeEEEEeCC
Q 019910 103 RD-ED-RCFYVVRDDLLHPLVNGNKARKMDALLPLLEDH-----IVTDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRG 175 (334)
Q Consensus 103 ~~-~g-~~lyvKrDDl~~p~~gGnK~RkL~~lL~~a~~~-----g~~~VVt~Gg~qsNh~~AvAaaaa~~Gl~~~ivv~~ 175 (334)
+. .| .+||+|+|+++ | +|+||+|.+.+++..+.+. |.++||+. ++||||+|+|++|+++|++|+||||.
T Consensus 141 ~~~lg~~~l~~K~E~~n-P-TGSFKDRga~~~~~~l~~~~~~~~g~~~Vv~a--SsGNtG~AlA~~a~~~Gi~~~I~~P~ 216 (486)
T 1e5x_A 141 KQFLGMNDLWVKHCGIS-H-TGSFKDLGMTVLVSQVNRLRKMKRPVVGVGCA--STGDTSAALSAYCASAGIPSIVFLPA 216 (486)
T ss_dssp HHHHCCSSEEEEETTSS-T-TSBTTHHHHHHHHHHHHHHHHTTCCCCEEEEC--CCSHHHHHHHHHHHHHTCCEEEEEEG
T ss_pred hhhcCCCcEEEeeccCC-C-ccCHHHHHHHHHHHHHHHHHHcCCCCeEEEEc--CCCHHHHHHHHHHHHcCCeEEEEECC
Confidence 77 66 58999999995 7 6899999988877665542 67888864 36999999999999999999999998
Q ss_pred C-CCccccchhHHHHHCC-eEEEECCCChHHHHHHHHHHHHHHhccCCCccchhhhhhhhHhhhhhhcccccchhhhhcc
Q 019910 176 E-QPQILTGYNLISTIYG-KVTYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASLTAQKSRASCLGQMDAHKGI 253 (334)
Q Consensus 176 ~-~p~~~~gn~~~~~~~G-~V~~v~~~~y~~~~~~~~~~a~~~~~~~g~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~l 253 (334)
. .+. .+..+++.|| +|+.++. +|++..+.+++++
T Consensus 217 ~~~s~---~k~~~~~~~GA~vi~v~g-~~dd~~~~a~~l~---------------------------------------- 252 (486)
T 1e5x_A 217 NKISM---AQLVQPIANGAFVLSIDT-DFDGCMKLIREIT---------------------------------------- 252 (486)
T ss_dssp GGCCH---HHHHHHHHTTCEEEEEES-CHHHHHHHHHHHH----------------------------------------
T ss_pred CCCCH---HHHHHHHhCCCEEEEECC-CHHHHHHHHHHHH----------------------------------------
Confidence 5 654 3667899999 9999985 5887655443211
Q ss_pred ccccCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhcCCCCCCEEEEcCCchhHHHHHHHHHHHcC------CCCeEEEEE
Q 019910 254 DNCRKKVLIVNEGAGDAVALLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGLGAICLG------CVPLFNTLL 327 (334)
Q Consensus 254 ~~~~~~~y~IpeGgs~p~a~~G~~~la~EI~eq~~~g~~~~D~Vvvp~GtGgt~aGl~~g~k~lg------~~~~VigV~ 327 (334)
+.. ..|+++. .||...+|+.++++||++|+ ++..+|+||||+|+||+++|++.+++++. +.++|+||+
T Consensus 253 -~~~-~~~~vns--~N~~~i~gq~t~~~Ei~~ql--~~~~~D~vvvpvG~GG~i~Gi~~a~k~~~~~Gli~p~~rvi~Ve 326 (486)
T 1e5x_A 253 -AEL-PIYLANS--LNSLRLEGQKTAAIEILQQF--DWQVPDWVIVPGGNLGNIYAFYKGFKXCQELGLVDRIPRMVCAQ 326 (486)
T ss_dssp -HHS-CEEEGGG--SHHHHHHHHTHHHHHHHHHT--TSCCCSEEEEECSSTHHHHHHHHHHHHHHHTTSSSCCCEEEEEE
T ss_pred -hcC-CEEEeCC--CCHHHHHHHHHHHHHHHHHc--CCCCCCEEEEeCCcHHHHHHHHHHHHHhhhhccCCCCCEEEEEe
Confidence 111 3566654 38999999999999999998 44468999999999999999999998763 788999999
Q ss_pred eccCC
Q 019910 328 VKLSR 332 (334)
Q Consensus 328 ~~gs~ 332 (334)
+.++.
T Consensus 327 ~~~~~ 331 (486)
T 1e5x_A 327 AANAN 331 (486)
T ss_dssp ETTSS
T ss_pred cCCCc
Confidence 98764
No 37
>3iau_A Threonine deaminase; pyridoxal phosphate, amino-acid biosynthesis, defensive PROT jasmonic acid pathway, jasmonic acid,structural genomics; HET: LLP 15P; 2.35A {Solanum lycopersicum}
Probab=99.97 E-value=1.1e-30 Score=254.99 Aligned_cols=187 Identities=14% Similarity=0.096 Sum_probs=153.5
Q ss_pred CCCcCCCCCccccCCCCeEEEEeCCCCCCCChhHHHHHHHhhhHHH-HhcCCCEEEEeCCccchHHHHHHHHHHHhCCeE
Q 019910 91 NTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLL-EDHIVTDLVTCGGCQSAHATAVAVSCAERGLKS 169 (334)
Q Consensus 91 ~~Tp~l~~~~l~~~~g~~lyvKrDDl~~p~~gGnK~RkL~~lL~~a-~~~g~~~VVt~Gg~qsNh~~AvAaaaa~~Gl~~ 169 (334)
+-||++..++|++..|.+||+|+|+++ | +|+||+|...+++..+ .+.+.++||++++ |||++|+|++|+++|++|
T Consensus 59 ~~TPL~~l~~l~~~~g~~i~~K~E~~~-p-tgSfKdRga~~~i~~l~~~~~~~~vv~ass--GN~g~a~A~aa~~~G~~~ 134 (366)
T 3iau_A 59 IESPLELAEKLSDRLGVNFYIKREDKQ-R-VFSFKLRGAYNMMSNLSREELDKGVITASA--GNHAQGVALAGQRLNCVA 134 (366)
T ss_dssp CCCCEEECHHHHHHHTSEEEEEEGGGS-T-TSBTTHHHHHHHHHTSCHHHHHHCEEEECS--SHHHHHHHHHHHHTTCCE
T ss_pred CCCCcEEhhhhhHhhCCEEEEEecCCC-C-CcchHHHHHHHHHHHHHHhCCCCEEEEeCC--CHHHHHHHHHHHHhCCce
Confidence 568999888888888999999999996 7 6899999998888664 3345578998875 999999999999999999
Q ss_pred EEEeCCCCCccccchhHHHHHCC-eEEEECCCChHHHHHHHHHHHHHHhccCCCccchhhhhhhhHhhhhhhcccccchh
Q 019910 170 HLLLRGEQPQILTGYNLISTIYG-KVTYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASLTAQKSRASCLGQMD 248 (334)
Q Consensus 170 ~ivv~~~~p~~~~gn~~~~~~~G-~V~~v~~~~y~~~~~~~~~~a~~~~~~~g~~~w~~~~~~~~~~~~~~~~~~~~~~~ 248 (334)
++|||...+.. +...++.|| +|+.++. .|+++.+.+++++
T Consensus 135 ~iv~P~~~~~~---k~~~~~~~GA~V~~v~~-~~~~~~~~a~~~~----------------------------------- 175 (366)
T 3iau_A 135 KIVMPTTTPQI---KIDAVRALGGDVVLYGK-TFDEAQTHALELS----------------------------------- 175 (366)
T ss_dssp EEEECTTCCHH---HHHHHHHTTCEEEECCS-SHHHHHHHHHHHH-----------------------------------
T ss_pred EEEeCCCCCHH---HHHHHHHCCCeEEEECc-CHHHHHHHHHHHH-----------------------------------
Confidence 99999987653 567889999 9999984 5886554433211
Q ss_pred hhhccccccCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhcCCCCCCEEEEcCCchhHHHHHHHHHHHcCCCCeEEEEEe
Q 019910 249 AHKGIDNCRKKVLIVNEGAGDAVALLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGLGAICLGCVPLFNTLLV 328 (334)
Q Consensus 249 ~~~~l~~~~~~~y~IpeGgs~p~a~~G~~~la~EI~eq~~~g~~~~D~Vvvp~GtGgt~aGl~~g~k~lg~~~~VigV~~ 328 (334)
+..+..|+.| ..||....|+.+++.||.+|+ ..+|+||||+|||||++|++.+++.++++++|+||++
T Consensus 176 ------~~~~~~~i~~--~~n~~~i~g~~t~~~Ei~~q~----~~~d~vvvpvG~GG~~~Gi~~~~k~~~~~~~vigVe~ 243 (366)
T 3iau_A 176 ------EKDGLKYIPP--FDDPGVIKGQGTIGTEINRQL----KDIHAVFIPVGGGGLIAGVATFFKQIAPNTKIIGVEP 243 (366)
T ss_dssp ------HHHTCEECCS--SSSHHHHHHHHHHHHHHHHHC----CSEEEEEEECSSSHHHHHHHHHHHHHSTTSEEEEEEE
T ss_pred ------HhcCCEecCC--CCChHHHHHHHHHHHHHHHhc----CCCCEEEEccCchHHHHHHHHHHHHhCCCCeEEEEee
Confidence 1122344333 347888899999999999997 3699999999999999999999999999999999999
Q ss_pred ccCC
Q 019910 329 KLSR 332 (334)
Q Consensus 329 ~gs~ 332 (334)
.++.
T Consensus 244 ~~~~ 247 (366)
T 3iau_A 244 YGAA 247 (366)
T ss_dssp GGGC
T ss_pred cCCh
Confidence 8874
No 38
>1tdj_A Biosynthetic threonine deaminase; allostery, cooperative, tetramer, regulation, pyridoxal PHOS isoleucine biosynthesis; HET: PLP; 2.80A {Escherichia coli} SCOP: c.79.1.1 d.58.18.2 d.58.18.2
Probab=99.97 E-value=1.1e-30 Score=265.70 Aligned_cols=186 Identities=18% Similarity=0.154 Sum_probs=152.5
Q ss_pred CCcCCCCCccccCCCCeEEEEeCCCCCCCChhHHHHHHHhhhHHHH-hcCCCEEEEeCCccchHHHHHHHHHHHhCCeEE
Q 019910 92 TCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLE-DHIVTDLVTCGGCQSAHATAVAVSCAERGLKSH 170 (334)
Q Consensus 92 ~Tp~l~~~~l~~~~g~~lyvKrDDl~~p~~gGnK~RkL~~lL~~a~-~~g~~~VVt~Gg~qsNh~~AvAaaaa~~Gl~~~ 170 (334)
-||++..+.|++..|.+||+|+||+| | +||||+|++.+.+..+. +.+.++||++++ ||||+|+|++|+++|++|+
T Consensus 31 ~TPL~~l~~Ls~~~g~~V~lK~E~lq-P-tgSfKdRgA~n~i~~l~~~~~~~gVV~aSs--GNhg~avA~aa~~lGi~~~ 106 (514)
T 1tdj_A 31 VTPLQKMEKLSSRLDNVILVKREDRQ-P-VHSFKLRGAYAMMAGLTEEQKAHGVITASA--GNHAQGVAFSSARLGVKAL 106 (514)
T ss_dssp CCCEEECHHHHHHTTSEEEEECGGGS-T-TSSSTHHHHHHHHHTTTTSSCSSSCEEEEC--SSSHHHHHHHHHHTTCCEE
T ss_pred CCCcEEchhhHHhhCCeEEEEECCCC-C-cccHHHHHHHHHHHHHHHhcCCCEEEEECC--cHHHHHHHHHHHHcCCcEE
Confidence 48888888888888999999999995 7 68899999988887764 355678998765 9999999999999999999
Q ss_pred EEeCCCCCccccchhHHHHHCC-eEEEECCCChHHHHHHHHHHHHHHhccCCCccchhhhhhhhHhhhhhhcccccchhh
Q 019910 171 LLLRGEQPQILTGYNLISTIYG-KVTYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASLTAQKSRASCLGQMDA 249 (334)
Q Consensus 171 ivv~~~~p~~~~gn~~~~~~~G-~V~~v~~~~y~~~~~~~~~~a~~~~~~~g~~~w~~~~~~~~~~~~~~~~~~~~~~~~ 249 (334)
||||...|.. +..+++.|| +|+.++. .|++..+.++++
T Consensus 107 IvmP~~~p~~---Kv~~~r~~GAeVvlv~~-~~dda~~~a~el------------------------------------- 145 (514)
T 1tdj_A 107 IVMPTATADI---KVDAVRGFGGEVLLHGA-NFDEAKAKAIEL------------------------------------- 145 (514)
T ss_dssp EECCSSCCHH---HHHHHHHHSCEEECCCS-SHHHHHHHHHHH-------------------------------------
T ss_pred EEECCCCCHH---HHHHHHHCCCEEEEECC-CHHHHHHHHHHH-------------------------------------
Confidence 9999988753 678999999 9999985 587654433221
Q ss_pred hhccccccCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhcCCCCCCEEEEcCCchhHHHHHHHHHHHcCCCCeEEEEEec
Q 019910 250 HKGIDNCRKKVLIVNEGAGDAVALLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGLGAICLGCVPLFNTLLVK 329 (334)
Q Consensus 250 ~~~l~~~~~~~y~IpeGgs~p~a~~G~~~la~EI~eq~~~g~~~~D~Vvvp~GtGgt~aGl~~g~k~lg~~~~VigV~~~ 329 (334)
.+..+..|+.|. .||..+.|+.+++.||++|+ + .+|+||||+|||||++|++.+++.++|.++||||++.
T Consensus 146 ----a~e~g~~~v~pf--dnp~~iaGqgTig~EI~eQl--~--~~D~vvvpvGgGGliaGia~~lk~~~P~~kVIgVep~ 215 (514)
T 1tdj_A 146 ----SQQQGFTWVPPF--DHPMVIAGQGTLALELLQQD--A--HLDRVFVPVGGGGLAAGVAVLIKQLMPQIKVIAVEAE 215 (514)
T ss_dssp ----HHHHCCEECCSS--CCHHHHHHHHHHHHHHHHHC--T--TCCEEEEECSSSHHHHHHHHHHHHHCTTCEEEEEEET
T ss_pred ----HHhcCCEeeCCC--CCHHHHHHHHHHHHHHHHHC--C--CCCEEEEccCcHHHHHHHHHHHHHhCCCCEEEEEecc
Confidence 111223454333 37878888889999999997 2 3899999999999999999999999999999999998
Q ss_pred cCC
Q 019910 330 LSR 332 (334)
Q Consensus 330 gs~ 332 (334)
++.
T Consensus 216 ~a~ 218 (514)
T 1tdj_A 216 DSA 218 (514)
T ss_dssp TTC
T ss_pred CCh
Confidence 864
No 39
>1vb3_A Threonine synthase; PLP-dependent enzyme, lyase; HET: KPA; 2.20A {Escherichia coli} SCOP: c.79.1.1
Probab=99.90 E-value=1.5e-23 Score=208.75 Aligned_cols=185 Identities=10% Similarity=-0.040 Sum_probs=135.3
Q ss_pred CcCCCCCccccCCCCeEEEEeCCCCCCCChhHHHHHHHhhh---HHHHhcCCCEEEEeCCccchHHHHHH-HHHHHhCCe
Q 019910 93 CPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALL---PLLEDHIVTDLVTCGGCQSAHATAVA-VSCAERGLK 168 (334)
Q Consensus 93 Tp~l~~~~l~~~~g~~lyvKrDDl~~p~~gGnK~RkL~~lL---~~a~~~g~~~VVt~Gg~qsNh~~AvA-aaaa~~Gl~ 168 (334)
||++..+. ++|+ +|++++| +|+||+|++.+++ ..+++.+..+||+.+ +||||.|+| ++|+++|++
T Consensus 84 TPL~~l~~-------~i~~-~E~~~~p-TgSfKdr~a~~l~~~l~~a~~~~~~~Iv~at--sGNtG~A~A~~~a~~~G~~ 152 (428)
T 1vb3_A 84 APVANVES-------DVGC-LELFHGP-TLAFKDFGGRFMAQMLTHIAGDKPVTILTAT--SGDTGAAVAHAFYGLPNVK 152 (428)
T ss_dssp CCEEEEET-------TEEE-EECCCST-TSBTHHHHHHHHHHHHHHHTTTCCEEEEEEC--SSSHHHHHHHHTTTCTTEE
T ss_pred CCeEEecC-------CeEE-eeccCCC-cccHHHHHHHHHHHHHHHHHhcCCCEEEecC--CchHHHHHHHHHhhhcCCe
Confidence 77776432 6999 8999668 6999999998873 445444456777644 699999999 599999999
Q ss_pred EEEEeCCC-CCccccchhHHHHHCC-eE--EEECCCChHHHHHHHHHHHHHHhccCCCccchhhhhhhhHhhhhhhcccc
Q 019910 169 SHLLLRGE-QPQILTGYNLISTIYG-KV--TYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASLTAQKSRASCL 244 (334)
Q Consensus 169 ~~ivv~~~-~p~~~~gn~~~~~~~G-~V--~~v~~~~y~~~~~~~~~~a~~~~~~~g~~~w~~~~~~~~~~~~~~~~~~~ 244 (334)
|+||||.. .+.. +..+++.|| +| +.++. .|++..+.+++.+ . .|
T Consensus 153 ~~I~~P~~~~s~~---k~~~m~~~GA~V~~v~v~g-~~d~~~~~~~~~~----~-----d~------------------- 200 (428)
T 1vb3_A 153 VVILYPRGKISPL---QEKLFCTLGGNIETVAIDG-DFDACQALVKQAF----D-----DE------------------- 200 (428)
T ss_dssp EEEEEETTCSCHH---HHHHHHSCCTTEEEEEEES-CHHHHHHHHHHGG----G-----CH-------------------
T ss_pred EEEEECCCCCCHH---HHHHHHhcCCeEEEEEeCC-CHHHHHHHHHHHH----h-----ch-------------------
Confidence 99999994 6653 456888899 98 77764 5887655544311 1 01
Q ss_pred cchhhhhccccccCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhcCCCCCCEEEEcCCchhHHHHHHHHHHHcCCCCeEE
Q 019910 245 GQMDAHKGIDNCRKKVLIVNEGAGDAVALLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGLGAICLGCVPLFN 324 (334)
Q Consensus 245 ~~~~~~~~l~~~~~~~y~IpeGgs~p~a~~G~~~la~EI~eq~~~g~~~~D~Vvvp~GtGgt~aGl~~g~k~lg~~~~Vi 324 (334)
++...+ ..+ ..+..||....|+.+++.||.+|+......+|+||||+|+||+++|++.+++.-.|..+||
T Consensus 201 -------~~~~~~-~~~--~~n~~n~~~~~gq~t~~~Ei~~ql~~~g~~~d~vvvpvG~GG~i~G~~~a~~~g~p~~kii 270 (428)
T 1vb3_A 201 -------ELKVAL-GLN--SANSINISRLLAQICYYFEAVAQLPQETRNQLVVSVPSGNFGDLTAGLLAKSLGLPVKRFI 270 (428)
T ss_dssp -------HHHHHH-TEE--CCSTTSHHHHHHTTHHHHHHHTTSCTTTTTSEEEEEECSSCHHHHHHHHHHHTTCCCSEEE
T ss_pred -------hhhhhc-Cee--eCCCCCHHHHHHHHHHHHHHHHHcccccCCCCEEEEeCCchHHHHHHHHHHHcCCCCCeEE
Confidence 011111 222 2334689999999999999999983111258999999999999999999988655666999
Q ss_pred EEEecc
Q 019910 325 TLLVKL 330 (334)
Q Consensus 325 gV~~~g 330 (334)
||+.++
T Consensus 271 ~a~~~~ 276 (428)
T 1vb3_A 271 AATNVN 276 (428)
T ss_dssp EEECSC
T ss_pred eecCCC
Confidence 998765
No 40
>1kl7_A Threonine synthase; threonine synthesis, pyridoxal 5-phosphate, beta-family, MON lyase; HET: PLP; 2.70A {Saccharomyces cerevisiae} SCOP: c.79.1.1
Probab=99.81 E-value=6.3e-20 Score=186.68 Aligned_cols=209 Identities=12% Similarity=0.081 Sum_probs=140.7
Q ss_pred ceeec--ccccccccCCCCCCCccc-----c-cCCCCcCCC--CCccccCCCCeEEEEeCCCCCCCChhHHHHHHHhhhH
Q 019910 65 KIHQI--KLFTTTEKHGGGPLGGIS-----F-LNNTCPFLG--DDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLP 134 (334)
Q Consensus 65 ~~~~~--~ll~~~~~~~~~~~~~~~-----~-~~~~Tp~l~--~~~l~~~~g~~lyvKrDDl~~p~~gGnK~RkL~~lL~ 134 (334)
.|+|+ +.+|.. +...-++ | .++.||+++ .+.+ .++|+|.|.+ +| +|+||||.+.+++.
T Consensus 66 l~~f~~~~~ip~~-----~l~~~v~~ay~~f~~~g~TPLv~~~l~~l-----~~l~~K~e~~-nP-TgSFKDrga~~~~~ 133 (514)
T 1kl7_A 66 MRLYIAQEEIPDA-----DLKDLIKRSYSTFRSDEVTPLVQNVTGDK-----ENLHILELFH-GP-TYAFKDVALQFVGN 133 (514)
T ss_dssp HHTTSCTTTSCHH-----HHHHHHHHHTTTCSSTTSSCEECCTTCSS-----SCEEEEECCC-ST-TSBTHHHHHHHHHH
T ss_pred HHHHhCcccCCHH-----HHHHHHHHHhhccCCCCCCceeehhcccc-----cchhhhhhcc-CC-CCcHHHHHHHHHHH
Confidence 57777 677751 1111223 5 388999998 4333 5799999999 58 68999999988843
Q ss_pred ---HHH-hcC---------CCEEEEeCCccchHHHHHHHHH--HHhCCeEEEEeCCC-CCccccchhHHHH--HCC-eEE
Q 019910 135 ---LLE-DHI---------VTDLVTCGGCQSAHATAVAVSC--AERGLKSHLLLRGE-QPQILTGYNLIST--IYG-KVT 195 (334)
Q Consensus 135 ---~a~-~~g---------~~~VVt~Gg~qsNh~~AvAaaa--a~~Gl~~~ivv~~~-~p~~~~gn~~~~~--~~G-~V~ 195 (334)
.+. +.| ..+||+.+ +||||.| |++| ++.|++|+||+|.. .+..+ ..++++ .+| +|+
T Consensus 134 ~~~~a~~~~g~~~~~~~~~~~~Iv~AT--SGNtG~A-A~~a~a~~~Gi~~~I~~P~~~~S~~q--~~qm~~~~g~~~~vv 208 (514)
T 1kl7_A 134 LFEYFLQRTNANLPEGEKKQITVVGAT--SGDTGSA-AIYGLRGKKDVSVFILYPTGRISPIQ--EEQMTTVPDENVQTL 208 (514)
T ss_dssp HHHHHHHHHHTTSCSSSCCCEEEEEEC--SSSHHHH-HHHHHTTCTTEEEEEEEETTSSCHHH--HHHHHHCCCTTEEEE
T ss_pred HHHHHHHhcCCccccccCCCCEEEECC--CCcHHHH-HHHHHHhhcCCeEEEEEcCCCCCHHH--HHHHhhhcCCCEEEE
Confidence 332 234 45666543 5999999 6666 89999999999996 66532 223443 455 677
Q ss_pred EECCCChHHHHHHHHHHHHHHhccCCCccchhhhhhhhHhhhhhhcccccchhhhhccccccCcEEEEcCCCcchhHHHH
Q 019910 196 YVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASLTAQKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVALLG 275 (334)
Q Consensus 196 ~v~~~~y~~~~~~~~~~a~~~~~~~g~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~IpeGgs~p~a~~G 275 (334)
.++. +|++..+.+++++ .+.+ +.... ..+.+ .-.||..++|
T Consensus 209 ~v~g-~fdda~~~vk~l~----~~~~-------------------------------~~~~~-~~~~~--Ns~N~~ri~g 249 (514)
T 1kl7_A 209 SVTG-TFDNCQDIVKAIF----GDKE-------------------------------FNSKH-NVGAV--NSINWARILA 249 (514)
T ss_dssp EESS-CHHHHHHHHHHHH----HCSS-------------------------------CC--C-CBCCC--CSCCHHHHHH
T ss_pred EcCC-CHHHHHHHHHHHH----hccc-------------------------------ccccc-eeEee--CCCCHhHHhh
Confidence 7774 6887666554322 2111 11111 12212 2247888999
Q ss_pred HHHHHHHHHHhhhcCC--CCCCEEEEcCCchhHHHHHHHHHHHcC-CCCeEEEEEeccC
Q 019910 276 VFRLLQYLSQDHLLGR--KRAIKFVVDAGTGTTAVGLGLGAICLG-CVPLFNTLLVKLS 331 (334)
Q Consensus 276 ~~~la~EI~eq~~~g~--~~~D~Vvvp~GtGgt~aGl~~g~k~lg-~~~~VigV~~~gs 331 (334)
.++.++|+.+|+. ++ ..+|+||||+|+||+++|.+. ++..| |..|+|+|++.++
T Consensus 250 Q~tyy~e~~~ql~-~~~~~~~d~~vvP~GngG~i~a~~~-ak~~G~p~~rli~v~~~n~ 306 (514)
T 1kl7_A 250 QMTYYFYSFFQAT-NGKDSKKVKFVVPSGNFGDILAGYF-AKKMGLPIEKLAIATNEND 306 (514)
T ss_dssp HHHHHHHHHHHHH-SSSSCCCEEEEEECSSSHHHHHHHH-HHHHTCCCCCEEEEECSCC
T ss_pred HHHHHHHHHHHHh-hhcCCCCcEEEEECCchHHHHHHHH-HHHcCCCCCEEEEEeCCcc
Confidence 9999999999872 22 358999999999999999886 55555 5569999999763
No 41
>4f4f_A Threonine synthase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.90A {Brucella melitensis BV}
Probab=99.80 E-value=3.3e-19 Score=179.55 Aligned_cols=180 Identities=12% Similarity=0.094 Sum_probs=130.2
Q ss_pred cCCCCcCCCCCccccCCCCeEEEEeCCCCCCCChhHHHHHHHhh---hHHH-HhcCCC-EEEEeCCccchHHHH-HHHHH
Q 019910 89 LNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDAL---LPLL-EDHIVT-DLVTCGGCQSAHATA-VAVSC 162 (334)
Q Consensus 89 ~~~~Tp~l~~~~l~~~~g~~lyvKrDDl~~p~~gGnK~RkL~~l---L~~a-~~~g~~-~VVt~Gg~qsNh~~A-vAaaa 162 (334)
.+..||+..- +.++|+|.|.+ +| +|+||+|.+..+ +..+ ++.|.+ +||+.+ +||||.+ +|++|
T Consensus 90 ~~~~~pl~~l-------~~~~~~kee~~-~P-TgSFKDRga~~~~~~l~~a~~~~g~~~~Vv~AS--SGNtG~aa~aa~a 158 (468)
T 4f4f_A 90 HDAVCPLVQT-------DANEFVLELFH-GP-TLAFKDVAMQLLARMMDYVLAQRGERATIVGAT--SGDTGGAAIEAFG 158 (468)
T ss_dssp STTSSCEEEE-------ETTEEEEECCC-ST-TSBTHHHHHHHHHHHHHHHHHHTTCCEEEEEEC--SSHHHHHHHHHHT
T ss_pred CCCCCceEEe-------cCCeehHHhcc-CC-cccHHHHHHHHHHHHHHHHHHhcCCCcEEEEEC--CchHHHHHHHHHH
Confidence 3456776642 23699999999 47 689999999888 6665 366765 677654 4999955 56779
Q ss_pred HHhCCeEEEEeCCC-CCccccchhHHHHHCC--eE--EEECCCChHHHHHHHHHHHHHHhccCCCccchhhhhhhhHhhh
Q 019910 163 AERGLKSHLLLRGE-QPQILTGYNLISTIYG--KV--TYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASLTAQ 237 (334)
Q Consensus 163 a~~Gl~~~ivv~~~-~p~~~~gn~~~~~~~G--~V--~~v~~~~y~~~~~~~~~~a~~~~~~~g~~~w~~~~~~~~~~~~ 237 (334)
+++|++|+||||.. .++. +...++.|| +| +.++ ++|++..+.+++++ .+.+
T Consensus 159 ~~~Gi~~~I~~P~~~~s~~---k~~~~~~~gganV~vv~v~-g~fdda~~~~k~~~----~d~~---------------- 214 (468)
T 4f4f_A 159 GRDNTDIFILFPNGRVSPV---QQRQMTSSGFSNVHALSIE-GNFDDCQNLVKGMF----NDLE---------------- 214 (468)
T ss_dssp TCSSEEEEEEEETTCSCHH---HHHHHHCSCCTTEEEEEEE-SCHHHHHHHHHHHH----HCHH----------------
T ss_pred hccCCcEEEEeCCCCCCHH---HHHHHHhcCCCeEEEeecC-CCHHHHHHHHHHHH----hccc----------------
Confidence 99999999999997 7664 345677784 65 5666 46998777665432 1110
Q ss_pred hhhcccccchhhhhccccccCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhcCCCCCCE---EEEcCCchhHHHHHHHHH
Q 019910 238 KSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVALLGVFRLLQYLSQDHLLGRKRAIK---FVVDAGTGTTAVGLGLGA 314 (334)
Q Consensus 238 ~~~~~~~~~~~~~~~l~~~~~~~y~IpeGgs~p~a~~G~~~la~EI~eq~~~g~~~~D~---Vvvp~GtGgt~aGl~~g~ 314 (334)
+.... ..+.++. .||..+.|+.++++||.+|+ + .+|. ||||+|+||+++|.+.+
T Consensus 215 ---------------~~~~~-~~~~vns--in~~ri~GQ~T~~~Ei~~ql--~--~~d~~v~vvVPvG~GG~i~g~~~A- 271 (468)
T 4f4f_A 215 ---------------FCDAL-SLSGVNS--INWARIMPQVVYYFTAALSL--G--APDRAVSFTVPTGNFGDIFAGYVA- 271 (468)
T ss_dssp ---------------HHHHH-TEEECCT--TSHHHHGGGHHHHHHHHHHT--T--TTSSCEEEEEECSSSHHHHHHHHH-
T ss_pred ---------------ccccc-ceEeCCC--CCHHHHHhHHHHHHHHHHhc--c--cCCCCeEEEEEeCCcHHHHHHHHH-
Confidence 11111 2343433 48889999999999999998 2 4777 99999999999999988
Q ss_pred HHcCC-CCeEEEE
Q 019910 315 ICLGC-VPLFNTL 326 (334)
Q Consensus 315 k~lg~-~~~VigV 326 (334)
+..|. ..+||+|
T Consensus 272 k~mGlPi~kli~a 284 (468)
T 4f4f_A 272 KRMGLPIEQLIIA 284 (468)
T ss_dssp HHHTCCEEEEEEE
T ss_pred HHhCCCCCEEEEE
Confidence 66775 4599999
No 42
>3v7n_A Threonine synthase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, lyase; 1.40A {Burkholderia thailandensis}
Probab=99.76 E-value=1e-17 Score=169.19 Aligned_cols=191 Identities=10% Similarity=0.038 Sum_probs=134.6
Q ss_pred CCCCcCCCCCccccCCCCeEEEEeCCCCCCCChhHHHHHHHhh---hHHHH-hcCCCE-EEEeCCccchHHHHHHHHHH-
Q 019910 90 NNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDAL---LPLLE-DHIVTD-LVTCGGCQSAHATAVAVSCA- 163 (334)
Q Consensus 90 ~~~Tp~l~~~~l~~~~g~~lyvKrDDl~~p~~gGnK~RkL~~l---L~~a~-~~g~~~-VVt~Gg~qsNh~~AvAaaaa- 163 (334)
+..||+..-+ ...+.++|+|.|.+ +| +|+||+|.+..+ +..+. +.|.+. ||+.+ +||||.|+|++++
T Consensus 100 ~~i~Pl~~l~---~~~~~~l~vkee~~-~P-TgSFKDRga~~~~~ll~~a~~~~g~~~~Vv~AS--SGNtG~Aaa~a~~~ 172 (487)
T 3v7n_A 100 ADITPLTTLG---TENGAPVSLLELSN-GP-TLAFKDMAMQLLGNLFEYTLAKHGETLNILGAT--SGDTGSAAEYAMRG 172 (487)
T ss_dssp GGSSCEEEEE---EETTEEEEEEECCC-ST-TSBTHHHHHHHHHHHHHHHHHTTTCCEEEEEEC--SSHHHHHHHHHHTT
T ss_pred ccCceeEEec---CCCCcceeHHhhcc-CC-cCcHHHHHHHHHHHHHHHHHHhcCCCcEEEEeC--ChHHHHHHHHHHHh
Confidence 5567766421 10012399999988 57 689999999887 77764 567664 66544 5999999777776
Q ss_pred HhCCeEEEEeCCC-CCccccchhHHHHHCC-e---EEEECCCChHHHHHHHHHHHHHHhccCCCccchhhhhhhhHhhhh
Q 019910 164 ERGLKSHLLLRGE-QPQILTGYNLISTIYG-K---VTYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASLTAQK 238 (334)
Q Consensus 164 ~~Gl~~~ivv~~~-~p~~~~gn~~~~~~~G-~---V~~v~~~~y~~~~~~~~~~a~~~~~~~g~~~w~~~~~~~~~~~~~ 238 (334)
+.|++|+||||.. .++. +...++.|| + |+.|+ ++|+++.+.+++++ .+.
T Consensus 173 ~~Gi~~~I~~P~~~~s~~---k~~qm~~~Ga~nv~vv~v~-G~fDda~~~vk~~~----~d~------------------ 226 (487)
T 3v7n_A 173 KEGVRVFMLSPHKKMSAF---QTAQMYSLQDPNIFNLAVN-GVFDDCQDIVKAVS----NDH------------------ 226 (487)
T ss_dssp CTTEEEEEEEETTCSCHH---HHHHHHTCCCTTEEEEEEE-SCHHHHHHHHHHHH----TCH------------------
T ss_pred ccCCeEEEEECCCCCCHH---HHHHHHhcCCCcEEEEEEC-CCHHHHHHHHHHhh----hch------------------
Confidence 9999999999997 6654 456889998 3 56676 46888777665422 111
Q ss_pred hhcccccchhhhhccccccCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhcCCCCCCEEEEcCCchhHHHHHHHHHHHcC
Q 019910 239 SRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVALLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGLGAICLG 318 (334)
Q Consensus 239 ~~~~~~~~~~~~~~l~~~~~~~y~IpeGgs~p~a~~G~~~la~EI~eq~~~g~~~~D~Vvvp~GtGgt~aGl~~g~k~lg 318 (334)
.+... ...+.++. -||..++|.++.++|+..|+..++..+|.||||+|+||+++|++.+. .+|
T Consensus 227 -------------~~~~~-~~l~~vns--~Np~ri~gQ~tyy~~~~~el~~~~~~~d~vvVP~GngG~i~g~~~A~-~mG 289 (487)
T 3v7n_A 227 -------------AFKAQ-QKIGTVNS--INWARVVAQVVYYFKGYFAATRSNDERVSFTVPSGNFGNVCAGHIAR-MMG 289 (487)
T ss_dssp -------------HHHHH-TTEECCST--TCHHHHHHHHHHHHHHHHHTCSSTTCCEEEEEGGGCHHHHHHHHHHH-HTT
T ss_pred -------------HHHhh-cCeeeeCC--CCHHHHHhHHHHHHHHHHHHHhcCCCCcEEEEecCchHHHHHHHHHH-HcC
Confidence 01111 12333433 37888999998888888776434567999999999999999999774 567
Q ss_pred CC-CeEEEEEecc
Q 019910 319 CV-PLFNTLLVKL 330 (334)
Q Consensus 319 ~~-~~VigV~~~g 330 (334)
++ .|||+|+..+
T Consensus 290 lp~~rli~a~~~n 302 (487)
T 3v7n_A 290 LPIEKLVVATNEN 302 (487)
T ss_dssp CCEEEEEEECTTC
T ss_pred CCCceEEEEeCCC
Confidence 55 4999998765
No 43
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=85.91 E-value=17 Score=31.74 Aligned_cols=35 Identities=6% Similarity=-0.220 Sum_probs=29.2
Q ss_pred CCCEEEEcCCchhHHHHHHHHHHHcCC-CCeEEEEEec
Q 019910 293 RAIKFVVDAGTGTTAVGLGLGAICLGC-VPLFNTLLVK 329 (334)
Q Consensus 293 ~~D~Vvvp~GtGgt~aGl~~g~k~lg~-~~~VigV~~~ 329 (334)
.+|.||+ .+...+.|+..+++..|. ++.|+|++-.
T Consensus 191 ~~~ai~~--~~d~~a~g~~~al~~~g~~di~vvg~d~~ 226 (291)
T 3l49_A 191 DVGAIWA--CWDVPMIGATQALQAAGRTDIRTYGVDGS 226 (291)
T ss_dssp SCCEEEE--SSHHHHHHHHHHHHHTTCCSCEEEEEECC
T ss_pred CcCEEEE--CCCchHHHHHHHHHHcCCCCeEEEEecCC
Confidence 6899885 467889999999999998 8889988743
No 44
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=80.92 E-value=29 Score=30.55 Aligned_cols=35 Identities=9% Similarity=-0.044 Sum_probs=27.9
Q ss_pred CCCCEEEEcCCchhHHHHHHHHHHHcCC--CCeEEEEEe
Q 019910 292 KRAIKFVVDAGTGTTAVGLGLGAICLGC--VPLFNTLLV 328 (334)
Q Consensus 292 ~~~D~Vvvp~GtGgt~aGl~~g~k~lg~--~~~VigV~~ 328 (334)
+.+|.||+ .+...+.|+..+++.+|. ++.|+|++-
T Consensus 186 ~~~~ai~~--~~d~~a~g~~~al~~~g~~~di~vig~d~ 222 (305)
T 3g1w_A 186 PNLAGIFA--TEANGGVGVGDAVRLESRAGEIQIISFDT 222 (305)
T ss_dssp TTEEEEEE--SSHHHHHHHHHHHHHTTCTTTSEEEEESC
T ss_pred CCceEEEE--CCCcchhhHHHHHHhcCCCCCeEEEEeCC
Confidence 35788775 556778899999999997 688998864
No 45
>3ipc_A ABC transporter, substrate binding protein (amino; venus flytrap domain, transport protein; 1.30A {Agrobacterium tumefaciens} PDB: 3ip5_A 3ip6_A 3ip7_A 3ip9_A 3ipa_A
Probab=80.26 E-value=25 Score=31.62 Aligned_cols=35 Identities=14% Similarity=-0.219 Sum_probs=28.0
Q ss_pred CCCEEEEcCCchhHHHHHHHHHHHcCCCCeEEEEEe
Q 019910 293 RAIKFVVDAGTGTTAVGLGLGAICLGCVPLFNTLLV 328 (334)
Q Consensus 293 ~~D~Vvvp~GtGgt~aGl~~g~k~lg~~~~VigV~~ 328 (334)
.||.||++ +.+..+.++...++..|..+.+++.+-
T Consensus 193 ~~d~v~~~-~~~~~a~~~~~~~~~~g~~~~~~~~~~ 227 (356)
T 3ipc_A 193 GVSIIYWG-GLHTEAGLIIRQAADQGLKAKLVSGDG 227 (356)
T ss_dssp TCCEEEEE-SCHHHHHHHHHHHHHHTCCCEEEECGG
T ss_pred CCCEEEEc-cCchHHHHHHHHHHHCCCCCcEEEecc
Confidence 47887764 566778899999999999999887543
No 46
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}
Probab=77.73 E-value=35 Score=29.73 Aligned_cols=43 Identities=7% Similarity=-0.165 Sum_probs=31.4
Q ss_pred HHHHHHHhhhcCCCCCCEEEEcCCchhHHHHHHHHHHHcCC-CCeEEEEEe
Q 019910 279 LLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGLGAICLGC-VPLFNTLLV 328 (334)
Q Consensus 279 la~EI~eq~~~g~~~~D~Vvvp~GtGgt~aGl~~g~k~lg~-~~~VigV~~ 328 (334)
.+.++.+.. +++|.||+.... +.|+..+++.+|. ++.|+|++-
T Consensus 190 ~~~~~l~~~----~~~~ai~~~~d~---a~g~~~al~~~g~~di~vig~d~ 233 (304)
T 3gbv_A 190 MLDDFFREH----PDVKHGITFNSK---VYIIGEYLQQRRKSDFSLIGYDL 233 (304)
T ss_dssp HHHHHHHHC----TTCCEEEESSSC---THHHHHHHHHTTCCSCEEEEESC
T ss_pred HHHHHHHhC----CCeEEEEEcCcc---hHHHHHHHHHcCCCCcEEEEeCC
Confidence 444555442 368998887654 6799999999996 888988863
No 47
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=75.42 E-value=42 Score=29.49 Aligned_cols=44 Identities=11% Similarity=-0.054 Sum_probs=32.1
Q ss_pred HHHHHHHhhhcCCCCCCEEEEcCCchhHHHHHHHHHHHcCC-----CCeEEEEEe
Q 019910 279 LLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGLGAICLGC-----VPLFNTLLV 328 (334)
Q Consensus 279 la~EI~eq~~~g~~~~D~Vvvp~GtGgt~aGl~~g~k~lg~-----~~~VigV~~ 328 (334)
...++.++. +++|.||+ .+...+.|+..+++..|. ++.|+|++-
T Consensus 178 ~~~~~l~~~----~~~~ai~~--~~d~~A~g~~~al~~~g~~vP~~dv~vig~D~ 226 (297)
T 3rot_A 178 RVKSYFKIH----PETNIIFC--LTSQALDPLGQMLLHPDRYDFNYQPQVYSFDK 226 (297)
T ss_dssp HHHHHHHHC----TTCCEEEE--SSHHHHHHHHHHHHSHHHHTCCCCCEEEEECC
T ss_pred HHHHHHHhC----CCCCEEEE--cCCcchHHHHHHHHhcCCccCCCceEEEEeCC
Confidence 444544442 46888886 447788999999999883 789999874
No 48
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A
Probab=72.79 E-value=48 Score=28.97 Aligned_cols=37 Identities=8% Similarity=-0.092 Sum_probs=29.5
Q ss_pred CCCCEEEEcCCchhHHHHHHHHHHHcCC---CCeEEEEEe
Q 019910 292 KRAIKFVVDAGTGTTAVGLGLGAICLGC---VPLFNTLLV 328 (334)
Q Consensus 292 ~~~D~Vvvp~GtGgt~aGl~~g~k~lg~---~~~VigV~~ 328 (334)
+++|.+++-+.+...+.|+..+++..|. ++.|+|++-
T Consensus 194 ~~~~a~~i~~~nD~~A~g~~~al~~~g~~v~di~vvG~D~ 233 (306)
T 8abp_A 194 PEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGING 233 (306)
T ss_dssp TTCSEEEEECSSHHHHHHHHHHHHHTTCCGGGEEEEEESS
T ss_pred CCCceEEEEeCCcHHHHHHHHHHHHcCCCCCceEEEEeCc
Confidence 4688855667778889999999999997 677888764
No 49
>3hut_A Putative branched-chain amino acid ABC transporter; extracellular ligand-binding receptor,transport protein; 1.93A {Rhodospirillum rubrum atcc 11170}
Probab=72.35 E-value=54 Score=29.37 Aligned_cols=35 Identities=6% Similarity=-0.197 Sum_probs=28.3
Q ss_pred CCCEEEEcCCchhHHHHHHHHHHHcCCCCeEEEEEe
Q 019910 293 RAIKFVVDAGTGTTAVGLGLGAICLGCVPLFNTLLV 328 (334)
Q Consensus 293 ~~D~Vvvp~GtGgt~aGl~~g~k~lg~~~~VigV~~ 328 (334)
.||.||++ +.+..+.++...++..|.++.+++.+-
T Consensus 194 ~~d~i~~~-~~~~~a~~~~~~~~~~g~~~p~~~~~~ 228 (358)
T 3hut_A 194 APQAIYLA-MAYEDAAPFLRALRARGSALPVYGSSA 228 (358)
T ss_dssp CCSEEEEE-SCHHHHHHHHHHHHHTTCCCCEEECGG
T ss_pred CCCEEEEc-cCchHHHHHHHHHHHcCCCCcEEecCc
Confidence 47877765 667789999999999999999887653
No 50
>1tjy_A Sugar transport protein; protein-ligand complex, signaling protein; HET: PAV; 1.30A {Salmonella typhimurium} SCOP: c.93.1.1 PDB: 1tm2_A 3t95_A* 3ejw_A*
Probab=71.91 E-value=50 Score=29.56 Aligned_cols=34 Identities=6% Similarity=-0.134 Sum_probs=26.9
Q ss_pred CCCEEEEcCCchhHHHHHHHHHHHcC-CCCeEEEEEe
Q 019910 293 RAIKFVVDAGTGTTAVGLGLGAICLG-CVPLFNTLLV 328 (334)
Q Consensus 293 ~~D~Vvvp~GtGgt~aGl~~g~k~lg-~~~~VigV~~ 328 (334)
++|.||++ +..++.|+..+++..| .++.|+|++-
T Consensus 189 ~~~aI~~~--nD~~A~g~~~al~~~G~~dv~VvG~D~ 223 (316)
T 1tjy_A 189 DLDAIIAP--DANALPAAAQAAENLKRNNLAIVGFST 223 (316)
T ss_dssp SCCEEEEC--STTHHHHHHHHHHHTTCCSCEEEEBCC
T ss_pred CCCEEEEC--CCccHHHHHHHHHHcCCCCEEEEEeCC
Confidence 58888875 4567899999999998 4578888764
No 51
>3h5t_A Transcriptional regulator, LACI family; DNA-dependent, protein structure initiative II(PSI II), NYSGXRC, 11232D), structural genomics; 2.53A {Corynebacterium glutamicum}
Probab=66.53 E-value=77 Score=28.82 Aligned_cols=44 Identities=11% Similarity=-0.012 Sum_probs=32.6
Q ss_pred HHHHHHHhhhcCCCCCCEEEEcCCchhHHHHHHHHHHHcCC----CCeEEEEEe
Q 019910 279 LLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGLGAICLGC----VPLFNTLLV 328 (334)
Q Consensus 279 la~EI~eq~~~g~~~~D~Vvvp~GtGgt~aGl~~g~k~lg~----~~~VigV~~ 328 (334)
.+.++.+.. ++||.||+. +...+.|+..+++.+|. ++.|+|++-
T Consensus 258 ~~~~ll~~~----~~~~ai~~~--nD~~A~g~~~al~~~G~~vP~disvigfD~ 305 (366)
T 3h5t_A 258 VAKELLETH----PDLTAVLCT--VDALAFGVLEYLKSVGKSAPADLSLTGFDG 305 (366)
T ss_dssp HHHHHHHHC----TTCCEEEES--SHHHHHHHHHHHHHTTCCTTTTCEEEEEEC
T ss_pred HHHHHHcCC----CCCcEEEEC--CcHHHHHHHHHHHHcCCCCCCceEEEEECC
Confidence 444555442 468999874 56788999999999995 578998873
No 52
>3td9_A Branched chain amino acid ABC transporter, peripl amino acid-binding protein; leucine binding, structural genomics; HET: MSE PHE; 1.90A {Thermotoga maritima}
Probab=65.55 E-value=77 Score=28.50 Aligned_cols=35 Identities=11% Similarity=-0.114 Sum_probs=28.9
Q ss_pred CCCEEEEcCCchhHHHHHHHHHHHcCCCCeEEEEEe
Q 019910 293 RAIKFVVDAGTGTTAVGLGLGAICLGCVPLFNTLLV 328 (334)
Q Consensus 293 ~~D~Vvvp~GtGgt~aGl~~g~k~lg~~~~VigV~~ 328 (334)
.||.||++ +.+..+.++...++..|..+.+++.+.
T Consensus 204 ~~d~v~~~-~~~~~a~~~~~~~~~~g~~~~~~~~~~ 238 (366)
T 3td9_A 204 NPDAIYIT-GYYPEIALISRQARQLGFTGYILAGDG 238 (366)
T ss_dssp CCSEEEEC-SCHHHHHHHHHHHHHTTCCSEEEECGG
T ss_pred CCCEEEEc-cchhHHHHHHHHHHHcCCCceEEeeCC
Confidence 47888774 677889999999999999999887654
No 53
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=65.43 E-value=64 Score=27.52 Aligned_cols=44 Identities=16% Similarity=-0.080 Sum_probs=32.4
Q ss_pred HHHHHHHhhhcCCC-CCCEEEEcCCchhHHHHHHHHHHHcC---CCCeEEEEEe
Q 019910 279 LLQYLSQDHLLGRK-RAIKFVVDAGTGTTAVGLGLGAICLG---CVPLFNTLLV 328 (334)
Q Consensus 279 la~EI~eq~~~g~~-~~D~Vvvp~GtGgt~aGl~~g~k~lg---~~~~VigV~~ 328 (334)
...++.+.. + .+|.||+. +...+.|+..+++.+| .++.|+|++-
T Consensus 169 ~~~~~l~~~----~~~~~ai~~~--~d~~a~g~~~al~~~g~vp~di~vvg~d~ 216 (272)
T 3o74_A 169 LMQQLIDDL----GGLPDALVTT--SYVLLQGVFDTLQARPVDSRQLQLGTFGD 216 (272)
T ss_dssp HHHHHHHHH----TSCCSEEEES--SHHHHHHHHHHHHTSCGGGCCCEEEEESC
T ss_pred HHHHHHhcC----CCCCcEEEEe--CchHHHHHHHHHHHcCCCccceEEEEeCC
Confidence 445555443 3 58998874 6778999999999999 4688888863
No 54
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=63.23 E-value=71 Score=27.24 Aligned_cols=35 Identities=11% Similarity=-0.059 Sum_probs=27.8
Q ss_pred CCCCEEEEcCCchhHHHHHHHHHHHcCC--CCeEEEEEe
Q 019910 292 KRAIKFVVDAGTGTTAVGLGLGAICLGC--VPLFNTLLV 328 (334)
Q Consensus 292 ~~~D~Vvvp~GtGgt~aGl~~g~k~lg~--~~~VigV~~ 328 (334)
+++|.||+. +..++.|+..+++.+|. ++.|+|++-
T Consensus 186 ~~~~ai~~~--~d~~a~g~~~al~~~g~p~di~vig~d~ 222 (276)
T 3ksm_A 186 PTIDGLFTP--NESTTIGALVAIRQSGMSKQFGFIGFDQ 222 (276)
T ss_dssp SCCCEEECC--SHHHHHHHHHHHHHTTCTTSSEEEEESC
T ss_pred CCceEEEEC--CchhhhHHHHHHHHcCCCCCeEEEEeCC
Confidence 368888764 66789999999999995 688888763
No 55
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}
Probab=62.63 E-value=55 Score=25.83 Aligned_cols=32 Identities=3% Similarity=-0.006 Sum_probs=25.7
Q ss_pred CEEEEeCCccchHHHHHHHHHHHhCCeEEEEeCC
Q 019910 142 TDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRG 175 (334)
Q Consensus 142 ~~VVt~Gg~qsNh~~AvAaaaa~~Gl~~~ivv~~ 175 (334)
++|+-+|. |..|..+|....+.|.+++++-+.
T Consensus 8 ~~viIiG~--G~~G~~la~~L~~~g~~v~vid~~ 39 (140)
T 3fwz_A 8 NHALLVGY--GRVGSLLGEKLLASDIPLVVIETS 39 (140)
T ss_dssp SCEEEECC--SHHHHHHHHHHHHTTCCEEEEESC
T ss_pred CCEEEECc--CHHHHHHHHHHHHCCCCEEEEECC
Confidence 45666875 889999999999999988887653
No 56
>3d02_A Putative LACI-type transcriptional regulator; periplasmic sugar-binding protein, structura genomics; HET: MSE GOL; 1.30A {Klebsiella pneumoniae subsp}
Probab=60.82 E-value=84 Score=27.31 Aligned_cols=34 Identities=9% Similarity=0.006 Sum_probs=27.0
Q ss_pred CCCEEEEcCCchhHHHHHHHHHHHcCC--CCeEEEEEe
Q 019910 293 RAIKFVVDAGTGTTAVGLGLGAICLGC--VPLFNTLLV 328 (334)
Q Consensus 293 ~~D~Vvvp~GtGgt~aGl~~g~k~lg~--~~~VigV~~ 328 (334)
++|.||+. +...+.|+..+++..|. ++.|+|++-
T Consensus 189 ~~~ai~~~--~d~~a~g~~~al~~~g~~~dv~vig~d~ 224 (303)
T 3d02_A 189 DLKAVVSF--GSNGPIGAGRAVKEKRAKNKVAVYGMMI 224 (303)
T ss_dssp TEEEEEES--STTHHHHHHHHHHHTTCTTTCEEEECCC
T ss_pred CCCEEEEe--CCcchhHHHHHHHhcCCCCCeEEEEeCC
Confidence 57888875 44678899999999997 688888764
No 57
>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*
Probab=60.67 E-value=70 Score=30.82 Aligned_cols=31 Identities=13% Similarity=0.099 Sum_probs=24.8
Q ss_pred CEEEEeCCccchHHHHHHHHHHHhCCeEEEEeC
Q 019910 142 TDLVTCGGCQSAHATAVAVSCAERGLKSHLLLR 174 (334)
Q Consensus 142 ~~VVt~Gg~qsNh~~AvAaaaa~~Gl~~~ivv~ 174 (334)
.+||-||. |..|..+|-.....|++++++-.
T Consensus 5 ~~viIiG~--Gr~G~~va~~L~~~g~~vvvId~ 35 (413)
T 3l9w_A 5 MRVIIAGF--GRFGQITGRLLLSSGVKMVVLDH 35 (413)
T ss_dssp CSEEEECC--SHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CeEEEECC--CHHHHHHHHHHHHCCCCEEEEEC
Confidence 34666885 88999999999999998877743
No 58
>3sg0_A Extracellular ligand-binding receptor; structural genomics, PSI-biology; HET: 173; 1.20A {Rhodopseudomonas palustris} PDB: 4dqd_A*
Probab=60.37 E-value=96 Score=27.83 Aligned_cols=35 Identities=14% Similarity=-0.053 Sum_probs=27.6
Q ss_pred CCCEEEEcCCchhHHHHHHHHHHHcCCCCeEEEEEe
Q 019910 293 RAIKFVVDAGTGTTAVGLGLGAICLGCVPLFNTLLV 328 (334)
Q Consensus 293 ~~D~Vvvp~GtGgt~aGl~~g~k~lg~~~~VigV~~ 328 (334)
.||.||++ +.+..+.++...++..|...+++++.-
T Consensus 214 ~~dav~~~-~~~~~a~~~~~~~~~~g~~~~~~~~~~ 248 (386)
T 3sg0_A 214 KPDAVFIA-SAGTPAVLPQKALRERGFKGAIYQTHG 248 (386)
T ss_dssp CCSEEEEE-CCSGGGHHHHHHHHHTTCCSEEECCGG
T ss_pred CCCEEEEe-cCcchHHHHHHHHHHcCCCCcEEeccc
Confidence 47887774 566778899999999999988877643
No 59
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=58.81 E-value=88 Score=26.92 Aligned_cols=35 Identities=6% Similarity=-0.190 Sum_probs=27.4
Q ss_pred CCCCEEEEcCCchhHHHHHHHHHHHcCC----CCeEEEEEe
Q 019910 292 KRAIKFVVDAGTGTTAVGLGLGAICLGC----VPLFNTLLV 328 (334)
Q Consensus 292 ~~~D~Vvvp~GtGgt~aGl~~g~k~lg~----~~~VigV~~ 328 (334)
+.+|.||+ .+..++.|+..+++.+|. ++.|+|++-
T Consensus 180 ~~~~ai~~--~~d~~a~g~~~al~~~g~~vP~di~vig~d~ 218 (276)
T 3jy6_A 180 DQKTVAFA--LKERWLLEFFPNLIISGLIDNQTVTATGFAD 218 (276)
T ss_dssp SSCEEEEE--SSHHHHHHHSHHHHHSSSCCSSSEEEEEBCC
T ss_pred CCCcEEEE--eCcHHHHHHHHHHHHcCCCCCCcEEEEEECC
Confidence 46888886 567889999999999995 455777653
No 60
>3lkb_A Probable branched-chain amino acid ABC transporter, amino acid binding protein; branched amino acid, PSI-II, NYSGXRC, structural genomics; 2.40A {Thermus thermophilus}
Probab=57.64 E-value=1.1e+02 Score=27.75 Aligned_cols=36 Identities=11% Similarity=-0.125 Sum_probs=29.2
Q ss_pred CCCEEEEcCCchhHHHHHHHHHHHcCCCCeEEEEEec
Q 019910 293 RAIKFVVDAGTGTTAVGLGLGAICLGCVPLFNTLLVK 329 (334)
Q Consensus 293 ~~D~Vvvp~GtGgt~aGl~~g~k~lg~~~~VigV~~~ 329 (334)
.||.||++ +++..+.++...++.+|.++.+++....
T Consensus 198 ~~dav~~~-~~~~~a~~~~~~~~~~g~~~~~~~~~~~ 233 (392)
T 3lkb_A 198 GVEYVVHQ-NVAGPVANILKDAKRLGLKMRHLGAHYT 233 (392)
T ss_dssp TCCEEEEE-SCHHHHHHHHHHHHHTTCCCEEEECGGG
T ss_pred CCCEEEEe-cCcchHHHHHHHHHHcCCCceEEEecCc
Confidence 47887764 5778899999999999999998876543
No 61
>3snr_A Extracellular ligand-binding receptor; structural genomics, APC102214, PSI-biology, midwest center structural genomics, MCSG; HET: MSE TYR PHE; 1.49A {Rhodopseudomonas palustris} PDB: 3uk0_A* 3t23_A* 3ukj_A* 4eyo_A* 4eyq_A* 3tx6_A* 4f8j_A* 4fb4_A*
Probab=56.44 E-value=1.1e+02 Score=27.15 Aligned_cols=34 Identities=18% Similarity=0.009 Sum_probs=27.5
Q ss_pred CCCEEEEcCCchhHHHHHHHHHHHcCCCCeEEEEE
Q 019910 293 RAIKFVVDAGTGTTAVGLGLGAICLGCVPLFNTLL 327 (334)
Q Consensus 293 ~~D~Vvvp~GtGgt~aGl~~g~k~lg~~~~VigV~ 327 (334)
.||.||++ +.+..+.++...++..|..+.++++.
T Consensus 190 ~~dav~~~-~~~~~a~~~~~~~~~~g~~~p~i~~~ 223 (362)
T 3snr_A 190 NPDAILVG-ASGTAAALPQTTLRERGYNGLIYQTH 223 (362)
T ss_dssp CCSEEEEE-CCHHHHHHHHHHHHHTTCCSEEEECG
T ss_pred CCCEEEEe-cCcchHHHHHHHHHHcCCCccEEecc
Confidence 47887764 56788999999999999998886654
No 62
>4gnr_A ABC transporter substrate-binding protein-branche amino acid transport; amino acid-binding protein, surface-exposed protein; HET: MLY; 1.00A {Streptococcus pneumoniae}
Probab=56.32 E-value=1.1e+02 Score=27.31 Aligned_cols=35 Identities=17% Similarity=-0.164 Sum_probs=27.2
Q ss_pred CCCEEEEcCCchhHHHHHHHHHHHcCCCCeEEEEEe
Q 019910 293 RAIKFVVDAGTGTTAVGLGLGAICLGCVPLFNTLLV 328 (334)
Q Consensus 293 ~~D~Vvvp~GtGgt~aGl~~g~k~lg~~~~VigV~~ 328 (334)
.+|.||+ .+.+..++-+.+.++.+|.+.++++...
T Consensus 196 ~~d~v~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 230 (353)
T 4gnr_A 196 DFDAIVV-PGYYNEAGKIVNQARGMGIDKPIVGGDG 230 (353)
T ss_dssp CCSEEEC-CSCHHHHHHHHHHHHHTTCCSCEEECGG
T ss_pred CCCEEEE-ecCcHHHHHHHHHHHHcCCCCcEEEecc
Confidence 4787766 4666778888999999999988887543
No 63
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=56.14 E-value=1.1e+02 Score=26.98 Aligned_cols=44 Identities=11% Similarity=0.007 Sum_probs=31.4
Q ss_pred HHHHHHHhhhcCCCCCCEEEEcCCchhHHHHHHHHHHHcCC--CCeEEEEE
Q 019910 279 LLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGLGAICLGC--VPLFNTLL 327 (334)
Q Consensus 279 la~EI~eq~~~g~~~~D~Vvvp~GtGgt~aGl~~g~k~lg~--~~~VigV~ 327 (334)
.+.++.+.. + +.+|.||+. +...+.|+..+++..|. ++.|+|++
T Consensus 177 ~~~~~l~~~--~-~~~~ai~~~--~d~~a~g~~~al~~~G~~~di~vig~d 222 (313)
T 3m9w_A 177 IMENALTAN--N-NKIDAVVAS--NDATAGGAIQALSAQGLSGKVAISGQD 222 (313)
T ss_dssp HHHHHHHHT--T-TCCCEEEES--SHHHHHHHHHHHHTTTCTTTSEECCCS
T ss_pred HHHHHHHhC--C-CCeeEEEEC--CCchHHHHHHHHHHcCCCCCcEEEecC
Confidence 444555432 1 368998875 56788899999999997 47787765
No 64
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=55.28 E-value=1.1e+02 Score=26.79 Aligned_cols=35 Identities=6% Similarity=-0.145 Sum_probs=28.4
Q ss_pred CCCCEEEEcCCchhHHHHHHHHHHHcCC----CCeEEEEEe
Q 019910 292 KRAIKFVVDAGTGTTAVGLGLGAICLGC----VPLFNTLLV 328 (334)
Q Consensus 292 ~~~D~Vvvp~GtGgt~aGl~~g~k~lg~----~~~VigV~~ 328 (334)
..||.||+ .+..++.|+..+++.+|. ++.|+|++-
T Consensus 186 ~~~~ai~~--~nd~~A~g~~~al~~~G~~vP~di~vig~D~ 224 (294)
T 3qk7_A 186 VPPTAIIT--DCNMLGDGVASALDKAGLLGGEGISLIAYDG 224 (294)
T ss_dssp SCCSEEEE--SSHHHHHHHHHHHHHTTCSSTTSCEEEEETC
T ss_pred CCCcEEEE--CCHHHHHHHHHHHHHcCCCCCCceEEEeecC
Confidence 46899986 467889999999999995 577888864
No 65
>2h3h_A Sugar ABC transporter, periplasmic sugar-binding protein; glucose binding protein, periplasmic binding protein, GBP; HET: BGC; 1.70A {Thermotoga maritima} PDB: 2qvc_A* 3c6q_B*
Probab=54.80 E-value=1.1e+02 Score=26.87 Aligned_cols=35 Identities=9% Similarity=-0.189 Sum_probs=27.2
Q ss_pred CCCCEEEEcCCchhHHHHHHHHHHHcCC--CCeEEEEEe
Q 019910 292 KRAIKFVVDAGTGTTAVGLGLGAICLGC--VPLFNTLLV 328 (334)
Q Consensus 292 ~~~D~Vvvp~GtGgt~aGl~~g~k~lg~--~~~VigV~~ 328 (334)
+.+|.||+.. ...+.|+..+++.+|. ++.|+|++-
T Consensus 181 ~~~~ai~~~~--d~~a~g~~~al~~~G~p~dv~vvg~d~ 217 (313)
T 2h3h_A 181 PDLDAFFGVY--AYNGPAQALVVKNAGKVGKVKIVCFDT 217 (313)
T ss_dssp TTCCEEEECS--TTHHHHHHHHHHHTTCTTTSEEEEECC
T ss_pred cCceEEEEcC--CCccHHHHHHHHHcCCCCCeEEEEeCC
Confidence 3588988754 4578899999999985 588888864
No 66
>2rjo_A Twin-arginine translocation pathway signal protei; PSI-2, NYSGXRC, twin arginine translocation pathway signal P structural genomics; HET: GAL; 2.05A {Burkholderia phytofirmans}
Probab=54.17 E-value=1.2e+02 Score=27.00 Aligned_cols=33 Identities=9% Similarity=-0.091 Sum_probs=26.7
Q ss_pred CCCEEEEcCCchhHHHHHHHHHHHcCC--CCeEEEEE
Q 019910 293 RAIKFVVDAGTGTTAVGLGLGAICLGC--VPLFNTLL 327 (334)
Q Consensus 293 ~~D~Vvvp~GtGgt~aGl~~g~k~lg~--~~~VigV~ 327 (334)
.+|.||+ .+..++.|+..+++.+|. ++.|+|++
T Consensus 197 ~~~aI~~--~nd~~A~g~~~al~~~G~~~di~vvg~D 231 (332)
T 2rjo_A 197 KIKGVWA--ANDDMALGAIEALRAEGLAGQIPVTGMD 231 (332)
T ss_dssp GEEEEEE--SSHHHHHHHHHHHHHTTCBTTBCEECSB
T ss_pred CeeEEEE--CCCchHHHHHHHHHHcCCCCCCEEEeec
Confidence 5788886 456789999999999997 67788765
No 67
>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*
Probab=53.92 E-value=15 Score=32.36 Aligned_cols=36 Identities=11% Similarity=-0.118 Sum_probs=26.2
Q ss_pred EEEEcCCchhHHHHHHHHHHHcCCCCeEEEEEeccC
Q 019910 296 KFVVDAGTGTTAVGLGLGAICLGCVPLFNTLLVKLS 331 (334)
Q Consensus 296 ~Vvvp~GtGgt~aGl~~g~k~lg~~~~VigV~~~gs 331 (334)
.+=+.||+|....-++..++.+++..+|+||+++-.
T Consensus 85 VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~ 120 (236)
T 2bm8_A 85 IVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLS 120 (236)
T ss_dssp EEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCT
T ss_pred EEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChH
Confidence 455677777777766665555688899999998654
No 68
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=53.40 E-value=1.2e+02 Score=27.01 Aligned_cols=34 Identities=12% Similarity=-0.012 Sum_probs=27.4
Q ss_pred CCCCEEEEcCCchhHHHHHHHHHHHcCC----CCeEEEEE
Q 019910 292 KRAIKFVVDAGTGTTAVGLGLGAICLGC----VPLFNTLL 327 (334)
Q Consensus 292 ~~~D~Vvvp~GtGgt~aGl~~g~k~lg~----~~~VigV~ 327 (334)
++||.||+ .+...+.|+..+++.+|. ++.|+|++
T Consensus 238 ~~~~ai~~--~nD~~A~g~~~al~~~G~~vP~disvvgfD 275 (339)
T 3h5o_A 238 PDCDALFC--CNDDLAIGALARSQQLGIAVPERLAIAGFN 275 (339)
T ss_dssp TTCCEEEE--SSHHHHHHHHHHHHHTTCCTTTTCEEECSB
T ss_pred CCCcEEEE--CChHHHHHHHHHHHHcCCCCCCCEEEEEEC
Confidence 36899886 557789999999999985 47788875
No 69
>3v8e_A Nicotinamidase; hydrolase; HET: JJJ; 2.71A {Saccharomyces cerevisiae} PDB: 2h0r_A
Probab=50.82 E-value=31 Score=30.17 Aligned_cols=40 Identities=33% Similarity=0.378 Sum_probs=30.9
Q ss_pred HHhcCCCEEEEeCCccchHHHHHHHHHHHhCCeEEEEeCC
Q 019910 136 LEDHIVTDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRG 175 (334)
Q Consensus 136 a~~~g~~~VVt~Gg~qsNh~~AvAaaaa~~Gl~~~ivv~~ 175 (334)
+++.|+++|+-||-.+..--.++|..|..+|++++++...
T Consensus 149 L~~~gi~~l~i~G~~t~~CV~~Ta~~a~~~g~~v~v~~Da 188 (216)
T 3v8e_A 149 LEKHHTDEVYIVGVALEYXVKATAISAAELGYKTTVLLDY 188 (216)
T ss_dssp HHHTTCCEEEEEEECTTTHHHHHHHHHHHTTCEEEEEEEE
T ss_pred HHhCCCCEEEEEEeccccHHHHHHHHHHHCCCEEEEeccc
Confidence 3568999999887644334567888899999999998765
No 70
>3gbc_A Pyrazinamidase/nicotinamidas PNCA; nicotinamidase - pyrazinamidase, resistance to pyrazinamide, hydrolase; 2.20A {Mycobacterium tuberculosis} PDB: 3pl1_A
Probab=50.64 E-value=30 Score=29.52 Aligned_cols=40 Identities=20% Similarity=0.277 Sum_probs=31.5
Q ss_pred HHhcCCCEEEEeCCccchHH-HHHHHHHHHhCCeEEEEeCCC
Q 019910 136 LEDHIVTDLVTCGGCQSAHA-TAVAVSCAERGLKSHLLLRGE 176 (334)
Q Consensus 136 a~~~g~~~VVt~Gg~qsNh~-~AvAaaaa~~Gl~~~ivv~~~ 176 (334)
+++.|+++|+-||- ..+.+ .++|.-|..+|++++++....
T Consensus 120 L~~~gi~~lvv~G~-~t~~CV~~Ta~da~~~G~~v~v~~Da~ 160 (186)
T 3gbc_A 120 LRQRGVDEVDVVGI-ATDHCVRQTAEDAVRNGLATRVLVDLT 160 (186)
T ss_dssp HHHTTCCEEEEEEE-CTTTHHHHHHHHHHHTTCEEEEEEEEE
T ss_pred HHhcCCCEEEEEEe-cccHHHHHHHHHHHHCCCeEEEEhhhc
Confidence 35789999998875 55655 578888999999999987653
No 71
>2gk4_A Conserved hypothetical protein; alpha-beta-alpha sandwich, flavoprotein, structural genomics protein structure initiative; 1.83A {Streptococcus pneumoniae}
Probab=47.89 E-value=23 Score=31.93 Aligned_cols=37 Identities=19% Similarity=0.250 Sum_probs=29.9
Q ss_pred CCCEEEEeCCc--------------cchHHHHHHHHHHHhCCeEEEEeCCC
Q 019910 140 IVTDLVTCGGC--------------QSAHATAVAVSCAERGLKSHLLLRGE 176 (334)
Q Consensus 140 g~~~VVt~Gg~--------------qsNh~~AvAaaaa~~Gl~~~ivv~~~ 176 (334)
|.+.+||.|++ +|-.|.++|-++++.|-+++++.+..
T Consensus 3 gk~vlVTgG~T~E~IDpVR~ItN~SSG~mG~aiA~~~~~~Ga~V~lv~~~~ 53 (232)
T 2gk4_A 3 AMKILVTSGGTSEAIDSVRSITNHSTGHLGKIITETLLSAGYEVCLITTKR 53 (232)
T ss_dssp CCEEEEECSBCEEESSSSEEEEECCCCHHHHHHHHHHHHTTCEEEEEECTT
T ss_pred CCEEEEeCCCcccccCceeeccCCCCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 55667776542 68899999999999999999988764
No 72
>4ggo_A Trans-2-enoyl-COA reductase; rossmann fold, oxidoreductase; 2.00A {Treponema denticola atcc 35405} PDB: 4ggp_A
Probab=47.87 E-value=1.9e+02 Score=28.07 Aligned_cols=42 Identities=5% Similarity=-0.131 Sum_probs=29.5
Q ss_pred ccCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhcCCCCCCEEEEcCCch
Q 019910 256 CRKKVLIVNEGAGDAVALLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTG 304 (334)
Q Consensus 256 ~~~~~y~IpeGgs~p~a~~G~~~la~EI~eq~~~g~~~~D~Vvvp~GtG 304 (334)
.+.+...++...+++....- +..+|.++. | ..|.+|-..|.+
T Consensus 110 ~G~~a~~i~~Dv~d~e~i~~---vi~~i~~~~--G--~IDiLVhS~A~~ 151 (401)
T 4ggo_A 110 EGLYSVTIDGDAFSDEIKAQ---VIEEAKKKG--I--KFDLIVYSLASP 151 (401)
T ss_dssp HTCCEEEEESCTTSHHHHHH---HHHHHHHTT--C--CEEEEEECCCCS
T ss_pred cCCCceeEeCCCCCHHHHHH---HHHHHHHhc--C--CCCEEEEecccc
Confidence 45667778887777766443 556666654 3 689999999876
No 73
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=47.32 E-value=1.4e+02 Score=25.71 Aligned_cols=34 Identities=6% Similarity=-0.038 Sum_probs=27.3
Q ss_pred CCCCEEEEcCCchhHHHHHHHHHHHcCC----CCeEEEEE
Q 019910 292 KRAIKFVVDAGTGTTAVGLGLGAICLGC----VPLFNTLL 327 (334)
Q Consensus 292 ~~~D~Vvvp~GtGgt~aGl~~g~k~lg~----~~~VigV~ 327 (334)
+.+|.||+. +...+.|+..+++.+|. ++.|+|++
T Consensus 191 ~~~~ai~~~--~d~~a~g~~~al~~~g~~vP~di~vig~d 228 (292)
T 3k4h_A 191 QPPTAIMAT--DDLIGLGVLSALSKKGFVVPKDVSIVSFN 228 (292)
T ss_dssp SCCSEEEES--SHHHHHHHHHHHHHTTCCTTTTCEEEEES
T ss_pred CCCcEEEEc--ChHHHHHHHHHHHHhCCCCCCeEEEEEec
Confidence 468998864 66788899999999984 56788876
No 74
>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}
Probab=46.83 E-value=19 Score=29.34 Aligned_cols=29 Identities=17% Similarity=0.180 Sum_probs=23.3
Q ss_pred CEEEEeCCccchHHHHHHHHHHHhCCeEEEEe
Q 019910 142 TDLVTCGGCQSAHATAVAVSCAERGLKSHLLL 173 (334)
Q Consensus 142 ~~VVt~Gg~qsNh~~AvAaaaa~~Gl~~~ivv 173 (334)
+.+| .|+ |=.|.++|...++.|++++||=
T Consensus 4 dV~I-IGa--GpaGL~aA~~La~~G~~V~v~E 32 (336)
T 3kkj_A 4 PIAI-IGT--GIAGLSAAQALTAAGHQVHLFD 32 (336)
T ss_dssp CEEE-ECC--SHHHHHHHHHHHHTTCCEEEEC
T ss_pred CEEE-ECc--CHHHHHHHHHHHHCCCCEEEEE
Confidence 4444 666 5689999999999999988884
No 75
>1jx6_A LUXP protein; protein-ligand complex, signaling protein; HET: AI2; 1.50A {Vibrio harveyi} SCOP: c.93.1.1 PDB: 1zhh_A* 2hj9_A*
Probab=46.61 E-value=1.6e+02 Score=26.19 Aligned_cols=34 Identities=15% Similarity=-0.070 Sum_probs=27.0
Q ss_pred CCCCEEEEcCCchhHHHHHHHHHHHcCC-CCeEEEEE
Q 019910 292 KRAIKFVVDAGTGTTAVGLGLGAICLGC-VPLFNTLL 327 (334)
Q Consensus 292 ~~~D~Vvvp~GtGgt~aGl~~g~k~lg~-~~~VigV~ 327 (334)
+.+|.||+ .+...+.|+..+++.+|. ++.|+|++
T Consensus 233 ~~~~ai~~--~nd~~A~g~~~al~~~g~~di~vvg~D 267 (342)
T 1jx6_A 233 PDVDFIYA--CSTDVALGAVDALAELGREDIMINGWG 267 (342)
T ss_dssp CCCSEEEE--SSHHHHHHHHHHHHHHTCTTSEEBCSB
T ss_pred CCccEEEE--CCChhHHHHHHHHHHcCCCCcEEEEeC
Confidence 35899886 456789999999999986 67777765
No 76
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=46.48 E-value=1.5e+02 Score=25.79 Aligned_cols=35 Identities=11% Similarity=-0.189 Sum_probs=28.6
Q ss_pred CCCCEEEEcCCchhHHHHHHHHHHHcCC----CCeEEEEEe
Q 019910 292 KRAIKFVVDAGTGTTAVGLGLGAICLGC----VPLFNTLLV 328 (334)
Q Consensus 292 ~~~D~Vvvp~GtGgt~aGl~~g~k~lg~----~~~VigV~~ 328 (334)
++||.||+. +...+.|+..+++.+|. ++.|+|++-
T Consensus 184 ~~~~ai~~~--~d~~A~g~~~al~~~g~~vP~di~vig~D~ 222 (289)
T 3k9c_A 184 TPPTAVVAF--NDRCATGVLDLLVRSGRDVPADISVVGYDD 222 (289)
T ss_dssp SCCSEEEES--SHHHHHHHHHHHHHTTCCTTTTCEEEEEEC
T ss_pred CCCCEEEEC--ChHHHHHHHHHHHHcCCCCCCceEEEEECC
Confidence 468998874 56788999999999985 578999874
No 77
>2wt9_A Nicotinamidase; hydrolase, pyrazinamidase; HET: GOL; 1.65A {Acinetobacter baumannii} PDB: 2wta_A*
Probab=45.73 E-value=35 Score=30.18 Aligned_cols=38 Identities=11% Similarity=0.227 Sum_probs=30.6
Q ss_pred HhcCCCEEEEeCCccchHH-HHHHHHHHHhCCeEEEEeCC
Q 019910 137 EDHIVTDLVTCGGCQSAHA-TAVAVSCAERGLKSHLLLRG 175 (334)
Q Consensus 137 ~~~g~~~VVt~Gg~qsNh~-~AvAaaaa~~Gl~~~ivv~~ 175 (334)
++.|+++||-||- ..|.| .++|.-|..+|++++++-..
T Consensus 163 ~~~gi~~lvv~G~-~T~~CV~~Ta~dA~~~Gy~V~Vv~Da 201 (235)
T 2wt9_A 163 KERGIDTVYVVGI-ATDFCVAWTALDAVKQGFKTLVIEDA 201 (235)
T ss_dssp HHTTCCEEEEEEE-CTTTHHHHHHHHHHHTTCEEEEEEEE
T ss_pred HHCCCCEEEEEEe-CccHHHHHHHHHHHhCCCEEEEechh
Confidence 4689999998875 55555 57888899999999988765
No 78
>3eef_A N-carbamoylsarcosine amidase related protein; structural genomics, protein structure initiative, midwest center for structural genomics; 2.35A {Thermoplasma acidophilum}
Probab=45.22 E-value=48 Score=27.85 Aligned_cols=59 Identities=14% Similarity=-0.000 Sum_probs=39.0
Q ss_pred HhcCCCEEEEeCCccchHH-HHHHHHHHHhCCeEEEEeCCCC-CccccchhHHHHH-CC-eEEEE
Q 019910 137 EDHIVTDLVTCGGCQSAHA-TAVAVSCAERGLKSHLLLRGEQ-PQILTGYNLISTI-YG-KVTYV 197 (334)
Q Consensus 137 ~~~g~~~VVt~Gg~qsNh~-~AvAaaaa~~Gl~~~ivv~~~~-p~~~~gn~~~~~~-~G-~V~~v 197 (334)
++.|+++||-||- ..|.+ .++|.-|..+|++++++-.... +...... ..++. +| +|+-.
T Consensus 106 ~~~gi~~lii~G~-~T~~CV~~Ta~da~~~Gy~V~vv~Da~as~~~~~~a-~~m~~~~ga~v~~~ 168 (182)
T 3eef_A 106 RANGIDTVVLIGL-DADICVRHTAADALYRNYRIIVVEDAVAARIDPNWK-DYFTRVYGATVKRS 168 (182)
T ss_dssp HHTTCCEEEEEEE-CTTTHHHHHHHHHHHTTCEEEEEEEEEECSSCTTHH-HHHHHHHCCEEECT
T ss_pred HhcCCCeEEEEEe-ccCHHHHHHHHHHHHCCCEEEEehhhcCCHHHHHHH-HHHHHhcCcEEeEH
Confidence 5689999998875 45554 5788889999999999876532 2221112 34444 67 66544
No 79
>1p9o_A Phosphopantothenoylcysteine synthetase; ligase; 2.30A {Homo sapiens} SCOP: c.72.3.1
Probab=44.48 E-value=52 Score=30.91 Aligned_cols=40 Identities=23% Similarity=0.233 Sum_probs=32.9
Q ss_pred HhcCCC-EEEEeCCc----------------cchHHHHHHHHHHHhCCeEEEEeCCC
Q 019910 137 EDHIVT-DLVTCGGC----------------QSAHATAVAVSCAERGLKSHLLLRGE 176 (334)
Q Consensus 137 ~~~g~~-~VVt~Gg~----------------qsNh~~AvAaaaa~~Gl~~~ivv~~~ 176 (334)
...|.+ .+||.||+ +|-.|.|+|-+|.+.|..++++.+..
T Consensus 33 ~l~gk~~VLITaGgT~EpID~DpVRfItN~SSGkmG~aiAe~~~~~Ga~V~lv~g~~ 89 (313)
T 1p9o_A 33 GAQGRRVVLVTSGGTKVPLEARPVRFLDNFSSGRRGATSAEAFLAAGYGVLFLYRAR 89 (313)
T ss_dssp HHTTCCEEEEEESBCEEESSSSCSEEEEECCCCHHHHHHHHHHHHTTCEEEEEEETT
T ss_pred hhcCCeEEEEeCCCcccccCCCceeEecCCCCcHHHHHHHHHHHHCCCEEEEEecCC
Confidence 357778 78887764 28899999999999999999988753
No 80
>2dri_A D-ribose-binding protein; sugar transport; HET: RIP; 1.60A {Escherichia coli} SCOP: c.93.1.1 PDB: 1urp_A* 1ba2_A 1dbp_A* 1drj_A* 1drk_A* 2gx6_A*
Probab=44.33 E-value=1.5e+02 Score=25.35 Aligned_cols=35 Identities=9% Similarity=-0.091 Sum_probs=28.5
Q ss_pred CCCCEEEEcCCchhHHHHHHHHHHHcCC-CCeEEEEEe
Q 019910 292 KRAIKFVVDAGTGTTAVGLGLGAICLGC-VPLFNTLLV 328 (334)
Q Consensus 292 ~~~D~Vvvp~GtGgt~aGl~~g~k~lg~-~~~VigV~~ 328 (334)
++||.||+. +..++.|+..+++.+|. ++.|+|.+-
T Consensus 181 ~~~~ai~~~--nD~~A~g~~~al~~~g~~dv~vvGfD~ 216 (271)
T 2dri_A 181 PDVQAVFAQ--NDEMALGALRALQTAGKSDVMVVGFDG 216 (271)
T ss_dssp TTCCEEEES--SHHHHHHHHHHHHHHTCCSCEEEEEEC
T ss_pred CCccEEEEC--CCcHHHHHHHHHHHcCCCCcEEEEecC
Confidence 358888865 56788999999999986 788998873
No 81
>1vp8_A Hypothetical protein AF0103; putative pyruvate kinase, structural genomics, joint center structural genomics, JCSG; HET: MSE FMN; 1.30A {Archaeoglobus fulgidus} SCOP: c.49.1.2
Probab=43.43 E-value=65 Score=28.50 Aligned_cols=56 Identities=20% Similarity=0.103 Sum_probs=38.1
Q ss_pred EEEEcCCCcchhHHHHHHHHHHHHHHhhhcCCCCCCEEEEcCCchhHHHHHHHHHHHcCCCCeEEEEE
Q 019910 260 VLIVNEGAGDAVALLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGLGAICLGCVPLFNTLL 327 (334)
Q Consensus 260 ~y~IpeGgs~p~a~~G~~~la~EI~eq~~~g~~~~D~Vvvp~GtGgt~aGl~~g~k~lg~~~~VigV~ 327 (334)
.|+--.|-.|-.. ...++.|=++++ + .++|||++-+|.|+.-+...+ ..++++.|.
T Consensus 18 ~YF~~~G~eNT~~---tl~la~era~e~--~---Ik~iVVAS~sG~TA~k~~e~~----~~i~lVvVT 73 (201)
T 1vp8_A 18 VYFNKPGRENTEE---TLRLAVERAKEL--G---IKHLVVASSYGDTAMKALEMA----EGLEVVVVT 73 (201)
T ss_dssp EEESSCSGGGHHH---HHHHHHHHHHHH--T---CCEEEEECSSSHHHHHHHHHC----TTCEEEEEE
T ss_pred EEecCCCcccHHH---HHHHHHHHHHHc--C---CCEEEEEeCCChHHHHHHHHh----cCCeEEEEe
Confidence 3444444444333 455777777665 3 679999999999997776644 457888886
No 82
>2fvy_A D-galactose-binding periplasmic protein; periplasmic binding protien, hinge, chemotaxis, transport,; HET: BGC; 0.92A {Escherichia coli} SCOP: c.93.1.1 PDB: 1glg_A* 2fw0_A* 2gbp_A* 2qw1_A* 2hph_A* 2ipn_A* 2ipm_A* 2ipl_A* 1gca_A* 1gcg_A 3ga5_A* 3gbp_A*
Probab=42.59 E-value=1.7e+02 Score=25.34 Aligned_cols=34 Identities=6% Similarity=-0.130 Sum_probs=28.1
Q ss_pred CCCEEEEcCCchhHHHHHHHHHHHcCC-CCeEEEEEe
Q 019910 293 RAIKFVVDAGTGTTAVGLGLGAICLGC-VPLFNTLLV 328 (334)
Q Consensus 293 ~~D~Vvvp~GtGgt~aGl~~g~k~lg~-~~~VigV~~ 328 (334)
.+|.||+ .+...+.|+..+++..|. ++.|+|++-
T Consensus 203 ~~~ai~~--~~d~~a~g~~~al~~~g~~di~vig~d~ 237 (309)
T 2fvy_A 203 KIEVVIA--NNDAMAMGAVEALKAHNKSSIPVFGVDA 237 (309)
T ss_dssp GCCEEEE--SSHHHHHHHHHHHHHTTCTTSCEECSBC
T ss_pred CccEEEE--CCchhHHHHHHHHHHcCCCCceEEecCC
Confidence 5888887 456788999999999997 888888753
No 83
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=42.20 E-value=1.9e+02 Score=25.85 Aligned_cols=43 Identities=12% Similarity=-0.089 Sum_probs=30.8
Q ss_pred HHHHHHHhhhcCCCCCCEEEEcCCchhHHHHHHHHHHHcCC----CCeEEEEE
Q 019910 279 LLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGLGAICLGC----VPLFNTLL 327 (334)
Q Consensus 279 la~EI~eq~~~g~~~~D~Vvvp~GtGgt~aGl~~g~k~lg~----~~~VigV~ 327 (334)
.+.++.++. ++||.||+ .+...+.|+..+++.+|. ++.|+|++
T Consensus 237 ~~~~ll~~~----~~~~ai~~--~nd~~A~g~~~al~~~g~~vP~disvvg~D 283 (344)
T 3kjx_A 237 MTQAMLERS----PDLDFLYY--SNDMIAAGGLLYLLEQGIDIPGQIGLAGFN 283 (344)
T ss_dssp HHHHHHHHS----TTCCEEEE--SSHHHHHHHHHHHHHTTCCTTTTCEEECSB
T ss_pred HHHHHHhcC----CCCCEEEE--CCHHHHHHHHHHHHHcCCCCCCceEEEEEC
Confidence 344454442 36899885 457889999999999985 46688765
No 84
>1pvv_A Otcase, ornithine carbamoyltransferase; dodecamer; 1.87A {Pyrococcus furiosus} SCOP: c.78.1.1 c.78.1.1 PDB: 1a1s_A
Probab=41.62 E-value=58 Score=30.57 Aligned_cols=35 Identities=11% Similarity=0.109 Sum_probs=29.9
Q ss_pred CEEEEeCCccchHHHHHHHHHHHhCCeEEEEeCCCC
Q 019910 142 TDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGEQ 177 (334)
Q Consensus 142 ~~VVt~Gg~qsNh~~AvAaaaa~~Gl~~~ivv~~~~ 177 (334)
.+|.-+|-. +|-+++++.+++++|++.+++.|++.
T Consensus 156 l~va~vGD~-~rva~Sl~~~~~~~g~~v~~~~P~~~ 190 (315)
T 1pvv_A 156 VKVVYVGDG-NNVAHSLMIAGTKLGADVVVATPEGY 190 (315)
T ss_dssp CEEEEESCC-CHHHHHHHHHHHHTTCEEEEECCTTC
T ss_pred cEEEEECCC-cchHHHHHHHHHHCCCEEEEECCccc
Confidence 356667775 89999999999999999999999865
No 85
>3gd5_A Otcase, ornithine carbamoyltransferase; structural genomics, NYSGXRC, target 9454P, operon, amino-acid biosynthesis, ARGI biosynthesis; 2.10A {Gloeobacter violaceus}
Probab=41.54 E-value=57 Score=30.79 Aligned_cols=35 Identities=17% Similarity=0.239 Sum_probs=30.1
Q ss_pred CEEEEeCCccchHHHHHHHHHHHhCCeEEEEeCCCC
Q 019910 142 TDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGEQ 177 (334)
Q Consensus 142 ~~VVt~Gg~qsNh~~AvAaaaa~~Gl~~~ivv~~~~ 177 (334)
.+|+-+|-. +|-+++++.+|+++|++++++.|++.
T Consensus 158 lkva~vGD~-~rva~Sl~~~~~~~G~~v~~~~P~~~ 192 (323)
T 3gd5_A 158 LKLAYVGDG-NNVAHSLLLGCAKVGMSIAVATPEGF 192 (323)
T ss_dssp CEEEEESCC-CHHHHHHHHHHHHHTCEEEEECCTTC
T ss_pred CEEEEECCC-CcHHHHHHHHHHHcCCEEEEECCCcc
Confidence 456668876 89999999999999999999999854
No 86
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=40.16 E-value=2.1e+02 Score=25.75 Aligned_cols=34 Identities=12% Similarity=-0.068 Sum_probs=27.0
Q ss_pred CCCCEEEEcCCchhHHHHHHHHHHHcCC----CCeEEEEE
Q 019910 292 KRAIKFVVDAGTGTTAVGLGLGAICLGC----VPLFNTLL 327 (334)
Q Consensus 292 ~~~D~Vvvp~GtGgt~aGl~~g~k~lg~----~~~VigV~ 327 (334)
++||.||+ .+...+.|+..+++.+|. ++.|+|++
T Consensus 249 ~~~~ai~~--~nD~~A~g~~~al~~~G~~vP~disvigfD 286 (355)
T 3e3m_A 249 PDTDCIFC--VSDMPAFGLLSRLKSIGVAVPEQVSVVGFG 286 (355)
T ss_dssp TTCCEEEE--SSHHHHHHHHHHHHHHTCCTTTTCEEECSS
T ss_pred CCCcEEEE--CChHHHHHHHHHHHHcCCCCCCceEEEEEC
Confidence 46899886 467888999999999995 56777764
No 87
>3eaf_A ABC transporter, substrate binding protein; PSI2, NYSGXRC, substrate binding P structural genomics, protein structure initiative; 2.00A {Aeropyrum pernix}
Probab=39.80 E-value=2.2e+02 Score=25.86 Aligned_cols=39 Identities=13% Similarity=-0.006 Sum_probs=29.9
Q ss_pred CCCEEEEcCCchhHHHHHHHHHHHcCCCCeEEEEEeccCC
Q 019910 293 RAIKFVVDAGTGTTAVGLGLGAICLGCVPLFNTLLVKLSR 332 (334)
Q Consensus 293 ~~D~Vvvp~GtGgt~aGl~~g~k~lg~~~~VigV~~~gs~ 332 (334)
.||.||+ .+.+..+.++...++.+|.+.++++.....++
T Consensus 199 ~~dav~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 237 (391)
T 3eaf_A 199 DPDYVWC-GNTISSCSLLGRAMAKVGLDAFLLTNVWGFDE 237 (391)
T ss_dssp CCSEEEE-CSCHHHHHHHHHHHHHHTCCCEEEECGGGCST
T ss_pred CCCEEEE-ecCcHHHHHHHHHHHHCCCCceEEEeccCCCH
Confidence 4788776 55667888999999999999999876544343
No 88
>3o94_A Nicotinamidase; hydrolase; 1.60A {Streptococcus pneumoniae} PDB: 3o90_A 3o91_A* 3o92_A* 3o93_A* 3s2s_A
Probab=39.30 E-value=55 Score=28.64 Aligned_cols=39 Identities=10% Similarity=0.155 Sum_probs=30.8
Q ss_pred HhcCCCEEEEeCCccchHH-HHHHHHHHHhCCeEEEEeCCC
Q 019910 137 EDHIVTDLVTCGGCQSAHA-TAVAVSCAERGLKSHLLLRGE 176 (334)
Q Consensus 137 ~~~g~~~VVt~Gg~qsNh~-~AvAaaaa~~Gl~~~ivv~~~ 176 (334)
++.|+++|+-||- ..|.| .++|.-|..+|++++++....
T Consensus 139 ~~~gi~~lvi~G~-~T~~CV~~Ta~~a~~~Gy~v~vv~Da~ 178 (211)
T 3o94_A 139 RERRVSTVILTGV-LTDISVLHTAIDAYNLGYDIEIVKPAV 178 (211)
T ss_dssp HHTTCCEEEEEEE-CTTTHHHHHHHHHHHTTCEEEEEEEEE
T ss_pred HhCCCCeEEEEee-ccChHHHHHHHHHHHCCCEEEEechhh
Confidence 4679999998875 55655 577888999999999887653
No 89
>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*
Probab=39.20 E-value=34 Score=30.59 Aligned_cols=32 Identities=3% Similarity=-0.119 Sum_probs=18.8
Q ss_pred EEEcCCchhHHHHHHHHHHHcCCCCeEEEEEecc
Q 019910 297 FVVDAGTGTTAVGLGLGAICLGCVPLFNTLLVKL 330 (334)
Q Consensus 297 Vvvp~GtGgt~aGl~~g~k~lg~~~~VigV~~~g 330 (334)
+=+.||||....-++. +...+.++|+||+++-
T Consensus 75 LDlGcGtG~~~~~la~--~~~~~~~~v~gvD~s~ 106 (261)
T 4gek_A 75 YDLGCSLGAATLSVRR--NIHHDNCKIIAIDNSP 106 (261)
T ss_dssp EEETCTTTHHHHHHHH--TCCSSSCEEEEEESCH
T ss_pred EEEeCCCCHHHHHHHH--hcCCCCCEEEEEECCH
Confidence 4455556654433332 2224678999999864
No 90
>3r2j_A Alpha/beta-hydrolase-like protein; nicotinamidase, cytoplasmic; 2.68A {Leishmania infantum}
Probab=39.08 E-value=66 Score=28.40 Aligned_cols=39 Identities=15% Similarity=0.139 Sum_probs=30.8
Q ss_pred HhcCCCEEEEeCCccchHH-HHHHHHHHHhCCeEEEEeCCC
Q 019910 137 EDHIVTDLVTCGGCQSAHA-TAVAVSCAERGLKSHLLLRGE 176 (334)
Q Consensus 137 ~~~g~~~VVt~Gg~qsNh~-~AvAaaaa~~Gl~~~ivv~~~ 176 (334)
++.|+++|+-||- ..+.| .++|.-|..+|++++++....
T Consensus 153 ~~~gi~~lvv~G~-~T~~CV~~Ta~dA~~~Gy~V~Vv~Da~ 192 (227)
T 3r2j_A 153 HSIGARRVFVCGV-AYDFCVFFTAMDARKNGFSVVLLEDLT 192 (227)
T ss_dssp HHHTCCEEEEEES-CTTTHHHHHHHHHHHTTCEEEEEEEEE
T ss_pred HHcCCCEEEEEEe-ccchHHHHHHHHHHHCCCEEEEEhHhh
Confidence 4679999998875 55665 578888999999999887653
No 91
>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*
Probab=38.46 E-value=64 Score=25.18 Aligned_cols=31 Identities=10% Similarity=-0.128 Sum_probs=19.6
Q ss_pred EEEcCCchhHHHHHHHHHHHcCCCCeEEEEEecc
Q 019910 297 FVVDAGTGTTAVGLGLGAICLGCVPLFNTLLVKL 330 (334)
Q Consensus 297 Vvvp~GtGgt~aGl~~g~k~lg~~~~VigV~~~g 330 (334)
+-+.+|+|....-++ +.+++..+|+||+++.
T Consensus 27 Ld~G~G~G~~~~~l~---~~~~~~~~v~~~D~~~ 57 (180)
T 1ej0_A 27 VDLGAAPGGWSQYVV---TQIGGKGRIIACDLLP 57 (180)
T ss_dssp EEESCTTCHHHHHHH---HHHCTTCEEEEEESSC
T ss_pred EEeCCCCCHHHHHHH---HHhCCCCeEEEEECcc
Confidence 445556665544433 2347779999999864
No 92
>4ep1_A Otcase, ornithine carbamoyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; 3.25A {Bacillus anthracis}
Probab=38.45 E-value=68 Score=30.54 Aligned_cols=35 Identities=11% Similarity=0.124 Sum_probs=29.7
Q ss_pred CEEEEeCCccchHHHHHHHHHHHhCCeEEEEeCCCC
Q 019910 142 TDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGEQ 177 (334)
Q Consensus 142 ~~VVt~Gg~qsNh~~AvAaaaa~~Gl~~~ivv~~~~ 177 (334)
.+|+.+|-. +|-+++++.+++++|++++++.|+..
T Consensus 180 lkva~vGD~-~nva~Sl~~~~~~~G~~v~~~~P~~~ 214 (340)
T 4ep1_A 180 IKLAYVGDG-NNVCHSLLLASAKVGMHMTVATPVGY 214 (340)
T ss_dssp CEEEEESCC-CHHHHHHHHHHHHHTCEEEEECCTTC
T ss_pred CEEEEECCC-chhHHHHHHHHHHcCCEEEEECCccc
Confidence 356667775 89999999999999999999999854
No 93
>4a8t_A Putrescine carbamoyltransferase; trabnsferase PALO, delta-N-(phosphonoacetyl)-L- ornithine, agmatine deiminase route, agmatine catabolism; HET: PAO PGE; 1.59A {Enterococcus faecalis}
Probab=37.82 E-value=78 Score=30.07 Aligned_cols=35 Identities=9% Similarity=0.067 Sum_probs=30.0
Q ss_pred CEEEEeCCccchHHHHHHHHHHHhCCeEEEEeCCCC
Q 019910 142 TDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGEQ 177 (334)
Q Consensus 142 ~~VVt~Gg~qsNh~~AvAaaaa~~Gl~~~ivv~~~~ 177 (334)
.+|+.+|-. +|-+++++.+++++|++++++.|++.
T Consensus 176 lkva~vGD~-~rva~Sl~~~~~~~G~~v~~~~P~~~ 210 (339)
T 4a8t_A 176 CKVVFVGDA-TQVCFSLGLITTKMGMNFVHFGPEGF 210 (339)
T ss_dssp CEEEEESSC-CHHHHHHHHHHHHTTCEEEEECCTTS
T ss_pred CEEEEECCC-chhHHHHHHHHHHcCCEEEEECCccc
Confidence 456668876 89999999999999999999999754
No 94
>2ef0_A Ornithine carbamoyltransferase; TTHA1199, thermus thermophil structural genomics, NPPSFA; 2.00A {Thermus thermophilus}
Probab=37.74 E-value=73 Score=29.72 Aligned_cols=35 Identities=11% Similarity=0.067 Sum_probs=30.1
Q ss_pred CEEEEeCCccchHHHHHHHHHHHhCCeEEEEeCCCC
Q 019910 142 TDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGEQ 177 (334)
Q Consensus 142 ~~VVt~Gg~qsNh~~AvAaaaa~~Gl~~~ivv~~~~ 177 (334)
.+|.-+|-. +|-+++++.+++++|++.+++.|++.
T Consensus 155 l~ia~vGD~-~rva~Sl~~~~~~~g~~v~~~~P~~~ 189 (301)
T 2ef0_A 155 LEVAWVGDG-NNVLNSLLEVAPLAGLKVRVATPKGY 189 (301)
T ss_dssp CEEEEESCC-CHHHHHHHHHHHHHTCEEEEECCTTC
T ss_pred cEEEEECCC-chhHHHHHHHHHHcCCEEEEECCchh
Confidence 356667775 89999999999999999999999865
No 95
>3g85_A Transcriptional regulator (LACI family); transcription regulator, PSI-II, structural genomics structure initiative; 1.84A {Clostridium acetobutylicum atcc 824}
Probab=36.44 E-value=99 Score=26.69 Aligned_cols=34 Identities=6% Similarity=-0.149 Sum_probs=28.2
Q ss_pred CCCCEEEEcCCchhHHHHHHHHHHHcCC----CCeEEEEE
Q 019910 292 KRAIKFVVDAGTGTTAVGLGLGAICLGC----VPLFNTLL 327 (334)
Q Consensus 292 ~~~D~Vvvp~GtGgt~aGl~~g~k~lg~----~~~VigV~ 327 (334)
+.||.||+ .+...+.|+..+++.+|. ++.|+|++
T Consensus 187 ~~~~ai~~--~~d~~a~g~~~al~~~g~~vP~di~vig~d 224 (289)
T 3g85_A 187 NTPKALFC--NSDSIALGVISVLNKRQISIPDDIEIVAIG 224 (289)
T ss_dssp SCCSEEEE--SSHHHHHHHHHHHHHTTCCTTTTCEEEEEE
T ss_pred CCCcEEEE--cCCHHHHHHHHHHHHcCCCCCCceEEEEeC
Confidence 46899886 467888999999999984 57799988
No 96
>3gyb_A Transcriptional regulators (LACI-family transcriptional regulatory protein); protein structure initiative II(PSI II), nysgxrc; 1.60A {Corynebacterium glutamicum}
Probab=36.28 E-value=2e+02 Score=24.47 Aligned_cols=34 Identities=18% Similarity=-0.032 Sum_probs=27.6
Q ss_pred CCCCEEEEcCCchhHHHHHHHHHHHcCC----CCeEEEEE
Q 019910 292 KRAIKFVVDAGTGTTAVGLGLGAICLGC----VPLFNTLL 327 (334)
Q Consensus 292 ~~~D~Vvvp~GtGgt~aGl~~g~k~lg~----~~~VigV~ 327 (334)
+.+|.||+. +...+.|+..+++.+|. ++.|+|++
T Consensus 175 ~~~~ai~~~--~d~~a~g~~~al~~~g~~vP~di~vvg~d 212 (280)
T 3gyb_A 175 PEVTAIFSS--NDITAIGALGAARELGLRVPEDLSIIGYD 212 (280)
T ss_dssp TTCCEEEES--SHHHHHHHHHHHHHHTCCTTTTCEEEEES
T ss_pred CCCCEEEEC--ChHHHHHHHHHHHHcCCCCCCeeEEEEEC
Confidence 468998864 56788999999999995 57888876
No 97
>3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti}
Probab=36.07 E-value=1.1e+02 Score=27.83 Aligned_cols=60 Identities=12% Similarity=0.159 Sum_probs=38.4
Q ss_pred hhHHHHhcCCCEEEEeCCccchHHHHHHHHHHHhCCeEEEEeCCCCCccccchhHHHHHCC-eEEEEC
Q 019910 132 LLPLLEDHIVTDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGEQPQILTGYNLISTIYG-KVTYVP 198 (334)
Q Consensus 132 lL~~a~~~g~~~VVt~Gg~qsNh~~AvAaaaa~~Gl~~~ivv~~~~p~~~~gn~~~~~~~G-~V~~v~ 198 (334)
++..+...|-+.|+..|| .|.-|.+++..|+.+|.+.+++.+.+. +....+.+| +.+...
T Consensus 156 ~~~~~~~~g~~~vli~gg-~g~vG~~a~qla~~~Ga~Vi~~~~~~~------~~~~~~~~Ga~~~~~~ 216 (349)
T 3pi7_A 156 MFDIVKQEGEKAFVMTAG-ASQLCKLIIGLAKEEGFRPIVTVRRDE------QIALLKDIGAAHVLNE 216 (349)
T ss_dssp HHHHHHHHCCSEEEESST-TSHHHHHHHHHHHHHTCEEEEEESCGG------GHHHHHHHTCSEEEET
T ss_pred HHHHHhhCCCCEEEEeCC-CcHHHHHHHHHHHHCCCEEEEEeCCHH------HHHHHHHcCCCEEEEC
Confidence 344444556566665554 478999999999999997766654322 234556688 644443
No 98
>2i6u_A Otcase, ornithine carbamoyltransferase; X-RAY crystallography, ornithine carbamyoltransferase, carbamoyl phosphate, L- norvaline; 2.20A {Mycobacterium tuberculosis} PDB: 2p2g_A
Probab=36.03 E-value=81 Score=29.45 Aligned_cols=36 Identities=11% Similarity=0.085 Sum_probs=30.2
Q ss_pred CEEEEeCCccchHHHHHHHHHHHhCCeEEEEeCCCC
Q 019910 142 TDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGEQ 177 (334)
Q Consensus 142 ~~VVt~Gg~qsNh~~AvAaaaa~~Gl~~~ivv~~~~ 177 (334)
.+|..+|-..+|-+++++.+++++|++.+++.|++.
T Consensus 149 l~va~vGD~~~rva~Sl~~~~~~~g~~v~~~~P~~~ 184 (307)
T 2i6u_A 149 LRLSYFGDGANNMAHSLLLGGVTAGIHVTVAAPEGF 184 (307)
T ss_dssp CEEEEESCTTSHHHHHHHHHHHHTTCEEEEECCTTS
T ss_pred eEEEEECCCCcCcHHHHHHHHHHCCCEEEEECCccc
Confidence 356667765479999999999999999999999865
No 99
>1im5_A 180AA long hypothetical pyrazinamidase/nicotinamidase; pyrazinamide, tuberculosis, PZA resistance, drug resistance, metal ION catalysis; 1.65A {Pyrococcus horikoshii} SCOP: c.33.1.3 PDB: 1ilw_A
Probab=35.73 E-value=89 Score=25.99 Aligned_cols=65 Identities=15% Similarity=0.214 Sum_probs=41.0
Q ss_pred CeEEEEeCCCCCCCChhHHHHHHHhhhHHHHhcCCCEEEEeCCccchHH-HHHHHHHHHhCCeEEEEeCC
Q 019910 107 RCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIVTDLVTCGGCQSAHA-TAVAVSCAERGLKSHLLLRG 175 (334)
Q Consensus 107 ~~lyvKrDDl~~p~~gGnK~RkL~~lL~~a~~~g~~~VVt~Gg~qsNh~-~AvAaaaa~~Gl~~~ivv~~ 175 (334)
..++-|.-+-.....++|..-.|...| ++.|+++||-||- ..|.+ .++|.-|..+|.+++++...
T Consensus 89 ~~vi~K~~~~~~~~~saF~~t~L~~~L---~~~gi~~lvi~G~-~t~~CV~~Ta~da~~~Gy~v~vv~Da 154 (180)
T 1im5_A 89 AVIISKATEPDKEAYSGFEGTDLAKIL---RGNGVKRVYICGV-ATEYCVRATALDALKHGFEVYLLRDA 154 (180)
T ss_dssp CEEEEECCSTTCCCCSTTTTSSHHHHH---HHTTCCEEEEEEE-CTTTHHHHHHHHHHHTTCEEEEEEEE
T ss_pred cEEEECCCCCCCccccCccCCCHHHHH---HhCCCCEEEEEEe-ecCHHHHHHHHHHHHCCCEEEEehhh
Confidence 346777653211223444322344333 5679999998875 55665 57788899999999888765
No 100
>1j2r_A Hypothetical isochorismatase family protein YECD; parallel beta-sheet 3-2-1-4-5-6, alpha-beta-alpha motif, TET structural genomics; 1.30A {Escherichia coli} SCOP: c.33.1.3
Probab=35.41 E-value=54 Score=27.81 Aligned_cols=38 Identities=16% Similarity=0.198 Sum_probs=30.3
Q ss_pred HhcCCCEEEEeCCccchHH-HHHHHHHHHhCCeEEEEeCC
Q 019910 137 EDHIVTDLVTCGGCQSAHA-TAVAVSCAERGLKSHLLLRG 175 (334)
Q Consensus 137 ~~~g~~~VVt~Gg~qsNh~-~AvAaaaa~~Gl~~~ivv~~ 175 (334)
++.|+++||-||- ..|.| .++|..|..+|++++++-..
T Consensus 128 ~~~gi~~lvi~G~-~T~~CV~~Ta~da~~~Gy~v~vv~Da 166 (199)
T 1j2r_A 128 RRRGIDTIVLCGI-STNIGVESTARNAWELGFNLVIAEDA 166 (199)
T ss_dssp HHTTCCEEEEEEE-CTTTHHHHHHHHHHHTTCEEEEEEEE
T ss_pred HHCCCCEEEEEee-eccHHHHHHHHHHHHCCCEEEEehhh
Confidence 4689999998875 55665 57888899999999888765
No 101
>4ekn_B Aspartate carbamoyltransferase; atcase, aspartate transcarbamoylase, pyrimidine biosynthesis thermostability, substrate channeling; 2.50A {Methanocaldococcus jannaschii} PDB: 3e2p_A 2rgw_A
Probab=35.39 E-value=1.3e+02 Score=27.96 Aligned_cols=36 Identities=6% Similarity=0.046 Sum_probs=29.3
Q ss_pred CEEEEeCCcc-chHHHHHHHHHHHh-CCeEEEEeCCCC
Q 019910 142 TDLVTCGGCQ-SAHATAVAVSCAER-GLKSHLLLRGEQ 177 (334)
Q Consensus 142 ~~VVt~Gg~q-sNh~~AvAaaaa~~-Gl~~~ivv~~~~ 177 (334)
.+|+-+|-.. +|-+++++.+|+++ |++.+++.|+..
T Consensus 152 lkva~vGD~~~~rva~Sl~~~~~~~~G~~v~~~~P~~~ 189 (306)
T 4ekn_B 152 IKIAFVGDLKYGRTVHSLVYALSLFENVEMYFVSPKEL 189 (306)
T ss_dssp CEEEEESCTTTCHHHHHHHHHHHTSSSCEEEEECCGGG
T ss_pred CEEEEEcCCCCCcHHHHHHHHHHhcCCCEEEEECCccc
Confidence 3566577643 79999999999999 999999998754
No 102
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*
Probab=35.33 E-value=89 Score=27.24 Aligned_cols=35 Identities=17% Similarity=0.018 Sum_probs=28.1
Q ss_pred CCCCEEEEcCCchhHHHHHHHHHHHcCC----CCeEEEEEe
Q 019910 292 KRAIKFVVDAGTGTTAVGLGLGAICLGC----VPLFNTLLV 328 (334)
Q Consensus 292 ~~~D~Vvvp~GtGgt~aGl~~g~k~lg~----~~~VigV~~ 328 (334)
++||.||+ .+..++.|+..+++..|. ++.|+|++-
T Consensus 194 ~~~~ai~~--~~d~~A~g~~~al~~~G~~vP~di~vvg~D~ 232 (289)
T 2fep_A 194 KKPTAILS--ATDEMALGIIHAAQDQGLSIPEDLDIIGFDN 232 (289)
T ss_dssp SCCSEEEE--SSHHHHHHHHHHHHHTTCCTTTTCEEEEEEC
T ss_pred CCCCEEEE--CCHHHHHHHHHHHHHcCCCCCCCeEEEEECC
Confidence 46899886 466789999999999985 467898874
No 103
>2h0a_A TTHA0807, transcriptional regulator; repressor, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus}
Probab=34.86 E-value=55 Score=28.10 Aligned_cols=34 Identities=21% Similarity=0.198 Sum_probs=26.4
Q ss_pred CCCCEEEEcCCchhHHHHHHHHHHHcCCC----CeEEEEE
Q 019910 292 KRAIKFVVDAGTGTTAVGLGLGAICLGCV----PLFNTLL 327 (334)
Q Consensus 292 ~~~D~Vvvp~GtGgt~aGl~~g~k~lg~~----~~VigV~ 327 (334)
+.||.|| +.+...+.|+..+++.+|.. +.|+|++
T Consensus 179 ~~~~ai~--~~~d~~a~g~~~al~~~g~~vP~di~vvg~d 216 (276)
T 2h0a_A 179 SPPLNVF--AGADQVALGVLEEAVRLGLTPGRDVRVLGFD 216 (276)
T ss_dssp CSSEEEE--CSSHHHHHHHHHHHHTTSCTTTTSEEEEEES
T ss_pred CCCCEEE--ECCcHHHHHHHHHHHHcCCCCCCCeEEEEeC
Confidence 4588887 46778899999999999854 4577765
No 104
>2x7x_A Sensor protein; transferase, sensor histidine kinase; HET: FRU; 2.64A {Bacteroides thetaiotaomicron}
Probab=34.85 E-value=2.4e+02 Score=24.90 Aligned_cols=36 Identities=14% Similarity=-0.008 Sum_probs=28.1
Q ss_pred CCCCEEEEcCCchhHHHHHHHHHHHcCC--CCeEEEEEec
Q 019910 292 KRAIKFVVDAGTGTTAVGLGLGAICLGC--VPLFNTLLVK 329 (334)
Q Consensus 292 ~~~D~Vvvp~GtGgt~aGl~~g~k~lg~--~~~VigV~~~ 329 (334)
+.+|.||+. +...+.|+..+++..|. ++.|+|++-.
T Consensus 187 ~~~~aI~~~--nd~~A~g~~~al~~~Gip~dv~vig~D~~ 224 (325)
T 2x7x_A 187 PKIDAVYAH--NDRIAPGAYQAAKMAGREKEMIFVGIDAL 224 (325)
T ss_dssp SCCCEEEES--STTHHHHHHHHHHHTTCTTSSEEEEEECC
T ss_pred CCCCEEEEC--CCchHHHHHHHHHHcCCCCCeEEEEECCC
Confidence 358998864 55688999999999985 5888888743
No 105
>4a8p_A Putrescine carbamoyltransferase; ornithine agmatine deiminase route; HET: PAO; 2.00A {Enterococcus faecalis} PDB: 4a8h_A* 3txx_A
Probab=34.70 E-value=92 Score=29.80 Aligned_cols=35 Identities=9% Similarity=0.067 Sum_probs=30.2
Q ss_pred CEEEEeCCccchHHHHHHHHHHHhCCeEEEEeCCCC
Q 019910 142 TDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGEQ 177 (334)
Q Consensus 142 ~~VVt~Gg~qsNh~~AvAaaaa~~Gl~~~ivv~~~~ 177 (334)
.+|+.+|-. +|-+++++.+++++|++++++.|+..
T Consensus 154 lkva~vGD~-~rva~Sl~~~~~~~G~~v~~~~P~~~ 188 (355)
T 4a8p_A 154 CKVVFVGDA-TQVCFSLGLITTKMGMNFVHFGPEGF 188 (355)
T ss_dssp CEEEEESCC-CHHHHHHHHHHHHTTCEEEEECCTTS
T ss_pred CEEEEECCC-chhHHHHHHHHHHcCCEEEEECCCcc
Confidence 456668876 99999999999999999999999854
No 106
>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum}
Probab=34.63 E-value=39 Score=30.52 Aligned_cols=30 Identities=30% Similarity=0.439 Sum_probs=23.6
Q ss_pred CEEEEeCCccchHHHHHHHHHHHhCCeEEEEeC
Q 019910 142 TDLVTCGGCQSAHATAVAVSCAERGLKSHLLLR 174 (334)
Q Consensus 142 ~~VVt~Gg~qsNh~~AvAaaaa~~Gl~~~ivv~ 174 (334)
+.+| .|| |=.|.++|...++.|++++|+=+
T Consensus 6 DViI-VGa--GpaGl~~A~~La~~G~~V~v~Er 35 (397)
T 3oz2_A 6 DVLV-VGG--GPGGSTAARYAAKYGLKTLMIEK 35 (397)
T ss_dssp EEEE-ECC--SHHHHHHHHHHHHTTCCEEEECS
T ss_pred CEEE-ECc--CHHHHHHHHHHHHCCCcEEEEeC
Confidence 3444 666 56899999999999999988843
No 107
>1jye_A Lactose operon repressor; gene regulation, protein stability, protein DNA-binding, transcription; 1.70A {Escherichia coli} SCOP: c.93.1.1 PDB: 1lbi_A 1lbg_A* 1lbh_A 1jyf_A 3edc_A 1efa_A* 1jwl_A* 2pe5_A* 1tlf_A* 2p9h_A* 2paf_A* 1cjg_A* 1l1m_A 1osl_A 2kei_A* 2kej_A* 2kek_A* 2bjc_A 1lqc_A 1lcc_A* ...
Probab=33.94 E-value=2.6e+02 Score=25.05 Aligned_cols=35 Identities=11% Similarity=-0.121 Sum_probs=27.3
Q ss_pred CCCCEEEEcCCchhHHHHHHHHHHHcCC----CCeEEEEEe
Q 019910 292 KRAIKFVVDAGTGTTAVGLGLGAICLGC----VPLFNTLLV 328 (334)
Q Consensus 292 ~~~D~Vvvp~GtGgt~aGl~~g~k~lg~----~~~VigV~~ 328 (334)
..||.||+. +...+.|+..+++.+|. ++.|+|++-
T Consensus 237 ~~~~ai~~~--nD~~A~g~~~al~~~G~~vP~disvvGfD~ 275 (349)
T 1jye_A 237 IVPTAMLVA--NDQMALGAMRAITESGLRVGADISVVGYDD 275 (349)
T ss_dssp CCCSEEEES--SHHHHHHHHHHHHHTTCCBTTTBEEECSBC
T ss_pred CCCCEEEEC--ChHHHHHHHHHHHHcCCCCCCcEEEEEECC
Confidence 468999874 66789999999999985 466777653
No 108
>2fn9_A Ribose ABC transporter, periplasmic ribose-bindin; RBP, ribose binding protein, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima} PDB: 2fn8_A*
Probab=33.85 E-value=2.2e+02 Score=24.30 Aligned_cols=34 Identities=9% Similarity=-0.086 Sum_probs=27.5
Q ss_pred CCCCEEEEcCCchhHHHHHHHHHHHcCC-CCeEEEEE
Q 019910 292 KRAIKFVVDAGTGTTAVGLGLGAICLGC-VPLFNTLL 327 (334)
Q Consensus 292 ~~~D~Vvvp~GtGgt~aGl~~g~k~lg~-~~~VigV~ 327 (334)
+.+|.||+. +..++.|+..+++.+|. ++.|+|++
T Consensus 190 ~~~~ai~~~--~d~~a~g~~~al~~~g~~dv~vig~d 224 (290)
T 2fn9_A 190 PEIKAIWCG--NDAMALGAMKACEAAGRTDIYIFGFD 224 (290)
T ss_dssp TTCCEEEES--SHHHHHHHHHHHHHTTCTTCEEECCB
T ss_pred CCCcEEEEC--CchHHHHHHHHHHHCCCCCeEEEEeC
Confidence 358988864 56788999999999996 78888875
No 109
>2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase, oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB: 2rgo_A*
Probab=33.65 E-value=53 Score=32.81 Aligned_cols=36 Identities=28% Similarity=0.411 Sum_probs=26.9
Q ss_pred HhcCCCEEEEeCCccchHHHHHHHHHHHhCCeEEEEeCC
Q 019910 137 EDHIVTDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRG 175 (334)
Q Consensus 137 ~~~g~~~VVt~Gg~qsNh~~AvAaaaa~~Gl~~~ivv~~ 175 (334)
.....+.|| .|| |-.|.++|+.+++.|++++++=..
T Consensus 29 ~~~~~DVvV-IGg--Gi~G~~~A~~La~rG~~V~LlE~~ 64 (571)
T 2rgh_A 29 QQEELDLLI-IGG--GITGAGVAVQAAASGIKTGLIEMQ 64 (571)
T ss_dssp HHSCBSEEE-ECC--SHHHHHHHHHHHHTTCCEEEECSS
T ss_pred ccCCCCEEE-ECc--CHHHHHHHHHHHHCCCcEEEEeCC
Confidence 334456666 676 679999999999999997776433
No 110
>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*
Probab=33.61 E-value=59 Score=26.31 Aligned_cols=32 Identities=31% Similarity=0.465 Sum_probs=26.2
Q ss_pred EEEEeCCccchHHHHHHHHHHHhCCeEEEEeCCC
Q 019910 143 DLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGE 176 (334)
Q Consensus 143 ~VVt~Gg~qsNh~~AvAaaaa~~Gl~~~ivv~~~ 176 (334)
+|+-.|| |-.|..+|...+++|++++++-+..
T Consensus 3 ~vvIIGg--G~~Gl~~A~~l~~~g~~v~lie~~~ 34 (180)
T 2ywl_A 3 DVIVVGG--GPSGLSAALFLARAGLKVLVLDGGR 34 (180)
T ss_dssp EEEEECC--SHHHHHHHHHHHHTTCCEEEEECSC
T ss_pred eEEEECC--CHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 3455776 7799999999999999999987653
No 111
>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A*
Probab=33.60 E-value=40 Score=31.09 Aligned_cols=32 Identities=38% Similarity=0.468 Sum_probs=25.0
Q ss_pred EEEEeCCccchHHHHHHHHHHHhCCeEEEEeCCC
Q 019910 143 DLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGE 176 (334)
Q Consensus 143 ~VVt~Gg~qsNh~~AvAaaaa~~Gl~~~ivv~~~ 176 (334)
+||-.|+ |-.|.++|+.+++.|++++++=...
T Consensus 6 DVvIIGa--G~~Gl~~A~~La~~G~~V~vlE~~~ 37 (397)
T 2oln_A 6 DVVVVGG--GPVGLATAWQVAERGHRVLVLERHT 37 (397)
T ss_dssp EEEEECC--SHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred CEEEECC--CHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 4555776 7799999999999999977775443
No 112
>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis}
Probab=33.49 E-value=42 Score=30.08 Aligned_cols=31 Identities=19% Similarity=0.191 Sum_probs=24.9
Q ss_pred EEEEeCCccchHHHHHHHHHHHhCCeEEEEeCC
Q 019910 143 DLVTCGGCQSAHATAVAVSCAERGLKSHLLLRG 175 (334)
Q Consensus 143 ~VVt~Gg~qsNh~~AvAaaaa~~Gl~~~ivv~~ 175 (334)
+||-.|| |-.|.++|+.+++.|++++++=+.
T Consensus 6 dvvIIG~--G~~Gl~~A~~La~~G~~V~vlE~~ 36 (369)
T 3dme_A 6 DCIVIGA--GVVGLAIARALAAGGHEVLVAEAA 36 (369)
T ss_dssp EEEEECC--SHHHHHHHHHHHHTTCCEEEECSS
T ss_pred CEEEECC--CHHHHHHHHHHHhCCCeEEEEeCC
Confidence 4555776 679999999999999998887544
No 113
>1gud_A ALBP, D-allose-binding periplasmic protein; periplasmic binding protein, X-RAY crystallography, hinge bending, conformational change; 1.7A {Escherichia coli} SCOP: c.93.1.1 PDB: 1gub_A 1rpj_A*
Probab=33.45 E-value=74 Score=27.75 Aligned_cols=44 Identities=14% Similarity=0.015 Sum_probs=32.1
Q ss_pred HHHHHHHhhhcCCCCCCEEEEcCCchhHHHHHHHHHHHcCC--CCeEEEEEe
Q 019910 279 LLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGLGAICLGC--VPLFNTLLV 328 (334)
Q Consensus 279 la~EI~eq~~~g~~~~D~Vvvp~GtGgt~aGl~~g~k~lg~--~~~VigV~~ 328 (334)
.+.++.++. ++||.||+. +..++.|+..+++..|. ++.|+|++-
T Consensus 183 ~~~~ll~~~----~~~~ai~~~--nD~~A~g~~~al~~~G~~~dv~vvGfD~ 228 (288)
T 1gud_A 183 VATNVLQRN----PNIKAIYCA--NDTMAMGVAQAVANAGKTGKVLVVGTDG 228 (288)
T ss_dssp HHHHHHHHC----TTCCEEEES--SHHHHHHHHHHHHHTTCTTTSEEEEESC
T ss_pred HHHHHHHhC----CCceEEEEC--CCchHHHHHHHHHhcCCCCCeEEEEeCC
Confidence 345555442 358998874 56789999999999986 478888863
No 114
>1u7z_A Coenzyme A biosynthesis bifunctional protein coabc; ligase; HET: PMT; 2.30A {Escherichia coli} SCOP: c.72.3.1 PDB: 1u7w_A* 1u7u_A* 1u80_A*
Probab=33.39 E-value=57 Score=29.12 Aligned_cols=25 Identities=24% Similarity=0.272 Sum_probs=22.0
Q ss_pred cchHHHHHHHHHHHhCCeEEEEeCC
Q 019910 151 QSAHATAVAVSCAERGLKSHLLLRG 175 (334)
Q Consensus 151 qsNh~~AvAaaaa~~Gl~~~ivv~~ 175 (334)
+|--|.|+|.++++.|.+++++.+.
T Consensus 33 Sg~iG~aiA~~~~~~Ga~V~l~~~~ 57 (226)
T 1u7z_A 33 SGKMGFAIAAAAARRGANVTLVSGP 57 (226)
T ss_dssp CSHHHHHHHHHHHHTTCEEEEEECS
T ss_pred ccHHHHHHHHHHHHCCCEEEEEECC
Confidence 5789999999999999999887654
No 115
>1nf9_A Phenazine biosynthesis protein PHZD; isochorismatase, enzyme, phenazine pathway, hydrolase; HET: BOG; 1.50A {Pseudomonas aeruginosa} SCOP: c.33.1.3 PDB: 1nf8_A* 3r77_A*
Probab=33.25 E-value=61 Score=27.77 Aligned_cols=38 Identities=16% Similarity=0.190 Sum_probs=30.1
Q ss_pred HhcCCCEEEEeCCccchHH-HHHHHHHHHhCCeEEEEeCC
Q 019910 137 EDHIVTDLVTCGGCQSAHA-TAVAVSCAERGLKSHLLLRG 175 (334)
Q Consensus 137 ~~~g~~~VVt~Gg~qsNh~-~AvAaaaa~~Gl~~~ivv~~ 175 (334)
++.|+++||-||- ..|.| .++|..|..+|++++++-..
T Consensus 138 ~~~gi~~lvi~G~-~T~~CV~~Ta~dA~~~Gy~V~vv~Da 176 (207)
T 1nf9_A 138 RAAGRDQLVLCGV-YAHVGVLISTVDAYSNDIQPFLVADA 176 (207)
T ss_dssp HHTTCCEEEEEEE-CTTTHHHHHHHHHHHTTCEEEEEEEE
T ss_pred HHcCCCEEEEEee-ecChHHHHHHHHHHHCCCEEEEeCcc
Confidence 4689999998875 56655 57788899999999888765
No 116
>2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7
Probab=33.17 E-value=37 Score=29.25 Aligned_cols=30 Identities=20% Similarity=0.345 Sum_probs=25.0
Q ss_pred EEEeCCccchHHHHHHHHHHHhCCeEEEEeCC
Q 019910 144 LVTCGGCQSAHATAVAVSCAERGLKSHLLLRG 175 (334)
Q Consensus 144 VVt~Gg~qsNh~~AvAaaaa~~Gl~~~ivv~~ 175 (334)
|+-.|| |..+..+|..+++.|++++++-+.
T Consensus 6 VvVVGg--G~aGl~aA~~la~~g~~v~lie~~ 35 (232)
T 2cul_A 6 VLIVGA--GFSGAETAFWLAQKGVRVGLLTQS 35 (232)
T ss_dssp EEEECC--SHHHHHHHHHHHHTTCCEEEEESC
T ss_pred EEEECc--CHHHHHHHHHHHHCCCCEEEEecC
Confidence 444776 789999999999999999988664
No 117
>4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A*
Probab=33.01 E-value=43 Score=30.91 Aligned_cols=32 Identities=19% Similarity=0.252 Sum_probs=25.1
Q ss_pred CEEEEeCCccchHHHHHHHHHHHhCCeEEEEeCC
Q 019910 142 TDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRG 175 (334)
Q Consensus 142 ~~VVt~Gg~qsNh~~AvAaaaa~~Gl~~~ivv~~ 175 (334)
++|.-.||.+ .+..+|.+|+++|++++++-+.
T Consensus 2 K~I~ilGgg~--~g~~~~~~Ak~~G~~vv~vd~~ 33 (363)
T 4ffl_A 2 KTICLVGGKL--QGFEAAYLSKKAGMKVVLVDKN 33 (363)
T ss_dssp CEEEEECCSH--HHHHHHHHHHHTTCEEEEEESC
T ss_pred CEEEEECCCH--HHHHHHHHHHHCCCEEEEEeCC
Confidence 4566677744 8889999999999999988543
No 118
>2ioy_A Periplasmic sugar-binding protein; ribose binding protein, thermophilic proteins; HET: RIP; 1.90A {Thermoanaerobacter tengcongensis}
Probab=32.71 E-value=82 Score=27.30 Aligned_cols=34 Identities=6% Similarity=-0.121 Sum_probs=28.0
Q ss_pred CCCCEEEEcCCchhHHHHHHHHHHHcCC-CCeEEEEE
Q 019910 292 KRAIKFVVDAGTGTTAVGLGLGAICLGC-VPLFNTLL 327 (334)
Q Consensus 292 ~~~D~Vvvp~GtGgt~aGl~~g~k~lg~-~~~VigV~ 327 (334)
++||.||+. +...+.|+..+++.+|. ++.|+|.+
T Consensus 182 ~~~~ai~~~--nD~~A~g~~~al~~~G~~di~viG~D 216 (283)
T 2ioy_A 182 PKIDAVFAQ--NDEMALGAIKAIEAANRQGIIVVGFD 216 (283)
T ss_dssp SCCCEEEES--SHHHHHHHHHHHHHTTCCCCEEEEEE
T ss_pred CCccEEEEC--CchHHHHHHHHHHHCCCCCcEEEEeC
Confidence 358888764 45678999999999997 88999987
No 119
>1vlv_A Otcase, ornithine carbamoyltransferase; TM1097, structural genomics, protein structure initiative, PSI, joint center for structu genomics; 2.25A {Thermotoga maritima} SCOP: c.78.1.1 c.78.1.1
Probab=32.63 E-value=77 Score=29.91 Aligned_cols=36 Identities=22% Similarity=0.300 Sum_probs=29.7
Q ss_pred CEEEEeCCccchHHHHHHHHHHHhCCeEEEEeCCCC
Q 019910 142 TDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGEQ 177 (334)
Q Consensus 142 ~~VVt~Gg~qsNh~~AvAaaaa~~Gl~~~ivv~~~~ 177 (334)
.+|+.+|-..+|-+++++.+++++|++.+++.|++.
T Consensus 168 l~va~vGD~~~rva~Sl~~~~~~~G~~v~~~~P~~~ 203 (325)
T 1vlv_A 168 VKVVFMGDTRNNVATSLMIACAKMGMNFVACGPEEL 203 (325)
T ss_dssp CEEEEESCTTSHHHHHHHHHHHHTTCEEEEESCGGG
T ss_pred cEEEEECCCCcCcHHHHHHHHHHCCCEEEEECCccc
Confidence 356667764479999999999999999999998754
No 120
>3brs_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; 2.00A {Clostridium phytofermentans}
Probab=32.24 E-value=64 Score=27.89 Aligned_cols=36 Identities=8% Similarity=-0.138 Sum_probs=28.2
Q ss_pred CCCCEEEEcCCchhHHHHHHHHHHHcCCC--CeEEEEEec
Q 019910 292 KRAIKFVVDAGTGTTAVGLGLGAICLGCV--PLFNTLLVK 329 (334)
Q Consensus 292 ~~~D~Vvvp~GtGgt~aGl~~g~k~lg~~--~~VigV~~~ 329 (334)
+++|.||+ .+...+.|+..+++..|.. +.|+|++-.
T Consensus 189 ~~~~ai~~--~~d~~a~g~~~al~~~G~~~di~vvg~d~~ 226 (289)
T 3brs_A 189 PDISVMVG--LNQYSATGAARAIKDMSLEAKVKLVCIDSS 226 (289)
T ss_dssp TTEEEEEE--SSHHHHHHHHHHHHHTTCTTTSEEEEEESC
T ss_pred CCceEEEE--CCCcchHHHHHHHHhcCCCCCEEEEEECCC
Confidence 35788876 4567889999999999974 889998743
No 121
>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*
Probab=31.90 E-value=44 Score=30.21 Aligned_cols=31 Identities=26% Similarity=0.351 Sum_probs=20.6
Q ss_pred EEEcCCchhHHHHHHHHHHHcCCCCeEEEEEecc
Q 019910 297 FVVDAGTGTTAVGLGLGAICLGCVPLFNTLLVKL 330 (334)
Q Consensus 297 Vvvp~GtGgt~aGl~~g~k~lg~~~~VigV~~~g 330 (334)
.|+..|+|+-..++..+.. +..+|+||+++.
T Consensus 126 ~vLDlG~GsG~~~~~la~~---~~~~v~~vDis~ 156 (284)
T 1nv8_A 126 TVADIGTGSGAIGVSVAKF---SDAIVFATDVSS 156 (284)
T ss_dssp EEEEESCTTSHHHHHHHHH---SSCEEEEEESCH
T ss_pred EEEEEeCchhHHHHHHHHC---CCCEEEEEECCH
Confidence 4666666655555554433 789999999863
No 122
>3irv_A Cysteine hydrolase; structural genomics, PSI-2, protein structure initiative, CY hydrolase; 1.60A {Pseudomonas syringae PV}
Probab=31.83 E-value=64 Score=28.45 Aligned_cols=60 Identities=17% Similarity=0.195 Sum_probs=40.0
Q ss_pred CCeEEEEeCCCCCCCChhHHHHHHHhhhHHHHhcCCCEEEEeCCccchHH-HHHHHHHHHhCCeEEEEeCC
Q 019910 106 DRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIVTDLVTCGGCQSAHA-TAVAVSCAERGLKSHLLLRG 175 (334)
Q Consensus 106 g~~lyvKrDDl~~p~~gGnK~RkL~~lL~~a~~~g~~~VVt~Gg~qsNh~-~AvAaaaa~~Gl~~~ivv~~ 175 (334)
+-.++-|. .. ++|.--.|...| ++.|+++||-||- ..|.| .++|..|..+|++++++-..
T Consensus 113 ~d~vi~K~-~~-----saF~~t~L~~~L---~~~gi~~lvi~G~-~T~~CV~~Ta~dA~~~Gy~V~vv~Da 173 (233)
T 3irv_A 113 DDVIVDKL-FY-----SGFHNTDLDTVL---RARDVDTIIVCGT-VTNVCCETTIRDGVHREYKVIALSDA 173 (233)
T ss_dssp TSEEEEES-SS-----CSSTTSTHHHHH---HHTTCCEEEEEEE-CTTTHHHHHHHHHHHTTCEEEEEEEE
T ss_pred CCEEEECC-cc-----CCCcCCcHHHHH---HhCCCCeEEEEee-cccHHHHHHHHHHHHCCCEEEEechh
Confidence 34566775 12 223222344444 5789999998875 45554 57888899999999988765
No 123
>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}
Probab=31.82 E-value=67 Score=26.26 Aligned_cols=48 Identities=13% Similarity=-0.019 Sum_probs=25.8
Q ss_pred HHHHHHHHHhhhcCCCCCCEEEE--cCCchhHHHHHHHHHHHcCCCCeEEEEEecc
Q 019910 277 FRLLQYLSQDHLLGRKRAIKFVV--DAGTGTTAVGLGLGAICLGCVPLFNTLLVKL 330 (334)
Q Consensus 277 ~~la~EI~eq~~~g~~~~D~Vvv--p~GtGgt~aGl~~g~k~lg~~~~VigV~~~g 330 (334)
..+...+.+.+.. ..+..-|+ .+|+|....-++ ...+..+|+||+++.
T Consensus 15 ~~~~~~~~~~l~~--~~~~~~vLDiG~G~G~~~~~l~----~~~~~~~v~~vD~~~ 64 (215)
T 4dzr_A 15 EVLVEEAIRFLKR--MPSGTRVIDVGTGSGCIAVSIA----LACPGVSVTAVDLSM 64 (215)
T ss_dssp HHHHHHHHHHHTT--CCTTEEEEEEESSBCHHHHHHH----HHCTTEEEEEEECC-
T ss_pred HHHHHHHHHHhhh--cCCCCEEEEecCCHhHHHHHHH----HhCCCCeEEEEECCH
Confidence 3455566655421 12344444 455555443333 335778999999864
No 124
>3hu5_A Isochorismatase family protein; structural genomics, protein structure INI NEW YORK structural genomix research consortium, nysgxrc; 1.50A {Desulfovibrio vulgaris}
Probab=31.77 E-value=66 Score=27.58 Aligned_cols=40 Identities=18% Similarity=0.148 Sum_probs=31.4
Q ss_pred HHhcCCCEEEEeCCccchHH-HHHHHHHHHhCCeEEEEeCCC
Q 019910 136 LEDHIVTDLVTCGGCQSAHA-TAVAVSCAERGLKSHLLLRGE 176 (334)
Q Consensus 136 a~~~g~~~VVt~Gg~qsNh~-~AvAaaaa~~Gl~~~ivv~~~ 176 (334)
+++.|+++||-||- ..|.| .++|.-|..+|++++++-...
T Consensus 121 L~~~gi~~lvi~G~-~T~~CV~~Ta~da~~~Gy~V~vv~Da~ 161 (204)
T 3hu5_A 121 LRRRGVDTLLVSGT-QYPNCIRGTAVDAFALDYDVVVVTDAC 161 (204)
T ss_dssp HHHTTCCEEEEEEE-CTTTHHHHHHHHHHHTTCEEEEEEEEE
T ss_pred HHhCCCCeEEEeee-ccchHHHHHHHHHHHCCCEEEEehhhh
Confidence 35789999998875 55554 577888999999999987653
No 125
>1duv_G Octase-1, ornithine transcarbamoylase; enzyme-inhibitor complex, transferase; HET: PSQ; 1.70A {Escherichia coli} SCOP: c.78.1.1 c.78.1.1 PDB: 1akm_A* 2otc_A*
Probab=31.64 E-value=94 Score=29.40 Aligned_cols=36 Identities=19% Similarity=0.232 Sum_probs=30.0
Q ss_pred CEEEEeCCccchHHHHHHHHHHHhCCeEEEEeCCCC
Q 019910 142 TDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGEQ 177 (334)
Q Consensus 142 ~~VVt~Gg~qsNh~~AvAaaaa~~Gl~~~ivv~~~~ 177 (334)
.+|+.+|-..+|-+++++.+|+++|++++++.|+..
T Consensus 156 l~ia~vGD~~~~va~Sl~~~~~~~G~~v~~~~P~~~ 191 (333)
T 1duv_G 156 MTLVYAGDARNNMGNSMLEAAALTGLDLRLVAPQAC 191 (333)
T ss_dssp CEEEEESCTTSHHHHHHHHHHHHHCCEEEEECCGGG
T ss_pred cEEEEECCCccchHHHHHHHHHHcCCEEEEECCccc
Confidence 356667765579999999999999999999999754
No 126
>1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli} SCOP: c.93.1.1 PDB: 1jhz_A
Probab=31.46 E-value=1e+02 Score=26.50 Aligned_cols=35 Identities=14% Similarity=-0.042 Sum_probs=27.7
Q ss_pred CCCCEEEEcCCchhHHHHHHHHHHHcCC----CCeEEEEEe
Q 019910 292 KRAIKFVVDAGTGTTAVGLGLGAICLGC----VPLFNTLLV 328 (334)
Q Consensus 292 ~~~D~Vvvp~GtGgt~aGl~~g~k~lg~----~~~VigV~~ 328 (334)
..+|.||+. +...+.|+..+++.+|. ++.|+|++-
T Consensus 186 ~~~~ai~~~--~d~~a~g~~~al~~~G~~vP~di~vvg~d~ 224 (289)
T 1dbq_A 186 HRPTAVFCG--GDIMAMGALCAADEMGLRVPQDVSLIGYDN 224 (289)
T ss_dssp SCCSEEEES--CHHHHHHHHHHHHHTTCCTTTTCEEEEEEC
T ss_pred CCCCEEEEC--CcHHHHHHHHHHHHcCCCCCCceEEEeeCC
Confidence 468998874 56788899999999985 466888874
No 127
>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0
Probab=31.25 E-value=63 Score=26.79 Aligned_cols=34 Identities=21% Similarity=0.064 Sum_probs=19.3
Q ss_pred CEEEEcCCchhHHHHHHHHHHHcCCCCeEEEEEecc
Q 019910 295 IKFVVDAGTGTTAVGLGLGAICLGCVPLFNTLLVKL 330 (334)
Q Consensus 295 D~Vvvp~GtGgt~aGl~~g~k~lg~~~~VigV~~~g 330 (334)
...|+.+|+|+-... ..+...++..+|+||+++.
T Consensus 41 ~~~vLDiG~G~G~~~--~~la~~~~~~~v~~vD~s~ 74 (204)
T 3e05_A 41 DLVMWDIGAGSASVS--IEASNLMPNGRIFALERNP 74 (204)
T ss_dssp TCEEEEETCTTCHHH--HHHHHHCTTSEEEEEECCH
T ss_pred CCEEEEECCCCCHHH--HHHHHHCCCCEEEEEeCCH
Confidence 344444454432222 2333447889999999853
No 128
>3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.70A {Bacillus halodurans}
Probab=31.25 E-value=39 Score=33.71 Aligned_cols=31 Identities=26% Similarity=0.507 Sum_probs=25.2
Q ss_pred EEEEeCCccchHHHHHHHHHHHhCCeEEEEeCC
Q 019910 143 DLVTCGGCQSAHATAVAVSCAERGLKSHLLLRG 175 (334)
Q Consensus 143 ~VVt~Gg~qsNh~~AvAaaaa~~Gl~~~ivv~~ 175 (334)
+||..|| |-.|.++|..+++.|+++.++=..
T Consensus 20 DVvVIGg--Gi~Gl~~A~~La~~G~~V~LlEk~ 50 (561)
T 3da1_A 20 DLLVIGG--GITGAGIALDAQVRGIQTGLVEMN 50 (561)
T ss_dssp EEEEECC--SHHHHHHHHHHHTTTCCEEEEESS
T ss_pred CEEEECC--CHHHHHHHHHHHhCCCcEEEEECC
Confidence 4444776 779999999999999998888655
No 129
>3hb7_A Isochorismatase hydrolase; PS structural genomics, midwest center for structural genomics structure initiative; 2.30A {Alkaliphilus metalliredigens}
Probab=31.16 E-value=69 Score=27.52 Aligned_cols=40 Identities=18% Similarity=0.180 Sum_probs=31.4
Q ss_pred HHhcCCCEEEEeCCccchHH-HHHHHHHHHhCCeEEEEeCCC
Q 019910 136 LEDHIVTDLVTCGGCQSAHA-TAVAVSCAERGLKSHLLLRGE 176 (334)
Q Consensus 136 a~~~g~~~VVt~Gg~qsNh~-~AvAaaaa~~Gl~~~ivv~~~ 176 (334)
+++.|+++||-||- ..|.| .++|.-|..+|++++++....
T Consensus 115 L~~~gi~~lvi~G~-~T~~CV~~Ta~dA~~~Gy~V~vv~Da~ 155 (204)
T 3hb7_A 115 LKEEGIDTVVLTGV-WTNVCVRSTATDALANAYKVITLSDGT 155 (204)
T ss_dssp HHHTTCCEEEEEEE-CTTTHHHHHHHHHHHTTCEEEEEEEEE
T ss_pred HHHCCCCEEEEEee-cccHHHHHHHHHHHHCCCEEEEechhc
Confidence 35689999998875 55554 578888999999999987653
No 130
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=31.12 E-value=1.1e+02 Score=27.31 Aligned_cols=35 Identities=17% Similarity=0.020 Sum_probs=28.2
Q ss_pred CCCCEEEEcCCchhHHHHHHHHHHHcCC----CCeEEEEEe
Q 019910 292 KRAIKFVVDAGTGTTAVGLGLGAICLGC----VPLFNTLLV 328 (334)
Q Consensus 292 ~~~D~Vvvp~GtGgt~aGl~~g~k~lg~----~~~VigV~~ 328 (334)
..||.||+ .+...+.|+..+++..|. ++.|+|++-
T Consensus 237 ~~~~ai~~--~nd~~A~g~~~al~~~G~~vP~disvig~D~ 275 (340)
T 1qpz_A 237 HRPTAVFC--GGDIMAMGALCAADEMGLRVPQDVSLIGYDN 275 (340)
T ss_dssp SCCSEEEE--SSHHHHHHHHHHHHHTTCCTTTTCEEEEEEC
T ss_pred CCCcEEEE--CCHHHHHHHHHHHHHcCCCCCCCeEEEeECC
Confidence 46899987 466788999999999985 467998874
No 131
>3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 1.69A {Xanthomonas campestris PV}
Probab=30.98 E-value=2.7e+02 Score=24.28 Aligned_cols=36 Identities=17% Similarity=0.191 Sum_probs=26.6
Q ss_pred CCCEEEEeCCccchHHHHHHHHHHHhCCeEEEEeCCCC
Q 019910 140 IVTDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGEQ 177 (334)
Q Consensus 140 g~~~VVt~Gg~qsNh~~AvAaaaa~~Gl~~~ivv~~~~ 177 (334)
|...|| +|+ .+--|.++|..-++.|.+++++-+...
T Consensus 6 ~k~~lV-TGa-s~GIG~aia~~la~~G~~V~~~~r~~~ 41 (274)
T 3e03_A 6 GKTLFI-TGA-SRGIGLAIALRAARDGANVAIAAKSAV 41 (274)
T ss_dssp TCEEEE-ETT-TSHHHHHHHHHHHHTTCEEEEEESCCS
T ss_pred CcEEEE-ECC-CChHHHHHHHHHHHCCCEEEEEeccch
Confidence 334455 455 478899999999999999888776543
No 132
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}
Probab=30.84 E-value=2.7e+02 Score=24.21 Aligned_cols=34 Identities=6% Similarity=-0.260 Sum_probs=28.0
Q ss_pred CCCCEEEEcCCchhHHHHHHHHHHHcCC----CCeEEEEE
Q 019910 292 KRAIKFVVDAGTGTTAVGLGLGAICLGC----VPLFNTLL 327 (334)
Q Consensus 292 ~~~D~Vvvp~GtGgt~aGl~~g~k~lg~----~~~VigV~ 327 (334)
++||.||+ .+..++.|+..+++.+|. ++.|+|++
T Consensus 201 ~~~~ai~~--~nd~~A~g~~~al~~~g~~vP~di~vig~D 238 (305)
T 3huu_A 201 HMPSVIIT--SDVMLNMQLLNVLYEYQLRIPEDIQTATFN 238 (305)
T ss_dssp CCCSEEEE--SSHHHHHHHHHHHHHTTCCTTTTCEEEEES
T ss_pred CCCCEEEE--CChHHHHHHHHHHHHcCCCCCcceEEEEEC
Confidence 46899986 567889999999999985 57788876
No 133
>3lop_A Substrate binding periplasmic protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.55A {Ralstonia solanacearum}
Probab=30.54 E-value=2.9e+02 Score=24.56 Aligned_cols=34 Identities=12% Similarity=-0.038 Sum_probs=28.0
Q ss_pred CCCEEEEcCCchhHHHHHHHHHHHcCCCCeEEEEE
Q 019910 293 RAIKFVVDAGTGTTAVGLGLGAICLGCVPLFNTLL 327 (334)
Q Consensus 293 ~~D~Vvvp~GtGgt~aGl~~g~k~lg~~~~VigV~ 327 (334)
.||.||++ +.+..+.++...++.+|..+.+++.+
T Consensus 196 ~~d~v~~~-~~~~~a~~~~~~~~~~g~~~~~i~~~ 229 (364)
T 3lop_A 196 DVQAIFLG-ATAEPAAQFVRQYRARGGEAQLLGLS 229 (364)
T ss_dssp CCSEEEEE-SCHHHHHHHHHHHHHTTCCCEEEECT
T ss_pred CCCEEEEe-cCcHHHHHHHHHHHHcCCCCeEEEec
Confidence 47887774 57788999999999999999988764
No 134
>3utn_X Thiosulfate sulfurtransferase TUM1; rhodanese-like domain; 1.90A {Saccharomyces cerevisiae}
Probab=30.51 E-value=74 Score=29.82 Aligned_cols=30 Identities=17% Similarity=0.125 Sum_probs=25.6
Q ss_pred CEEEEcCCchhHHHHHHHHHHHcCC-CCeEE
Q 019910 295 IKFVVDAGTGTTAVGLGLGAICLGC-VPLFN 324 (334)
Q Consensus 295 D~Vvvp~GtGgt~aGl~~g~k~lg~-~~~Vi 324 (334)
..||+-||||-|++-++.+++.+|. +++++
T Consensus 276 k~vI~yCgsGvtA~~~~laL~~lG~~~v~lY 306 (327)
T 3utn_X 276 KPTICSCGTGVSGVIIKTALELAGVPNVRLY 306 (327)
T ss_dssp SCEEEECSSSHHHHHHHHHHHHTTCCSEEEE
T ss_pred CCEEEECChHHHHHHHHHHHHHcCCCCceeC
Confidence 3489999999999999999999996 46654
No 135
>3lqy_A Putative isochorismatase hydrolase; structural genomics, PSI-2, PROT structure initiative, midwest center for structural genomic; 1.75A {Oleispira antarctica} SCOP: c.33.1.0
Probab=30.29 E-value=70 Score=27.04 Aligned_cols=39 Identities=18% Similarity=0.231 Sum_probs=30.1
Q ss_pred HhcCCCEEEEeCCccchH-HHHHHHHHHHhCCeEEEEeCCC
Q 019910 137 EDHIVTDLVTCGGCQSAH-ATAVAVSCAERGLKSHLLLRGE 176 (334)
Q Consensus 137 ~~~g~~~VVt~Gg~qsNh-~~AvAaaaa~~Gl~~~ivv~~~ 176 (334)
++.|+++||-||- ..|. -.++|..|..+|++++++....
T Consensus 109 ~~~gi~~lii~G~-~T~~CV~~Ta~da~~~Gy~v~vv~Da~ 148 (190)
T 3lqy_A 109 DDAGIKKLVIVGA-MTHMAIDAVTRAAEDLGYECAVAHDAC 148 (190)
T ss_dssp HHC-CCEEEEEEE-CTTTHHHHHHHHHHHHTCEEEEEEEEE
T ss_pred HhCCCCEEEEEec-CcChHHHHHHHHHHHCCCEEEEechhh
Confidence 5689999998875 4555 4578888999999999887653
No 136
>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*
Probab=30.20 E-value=91 Score=24.87 Aligned_cols=34 Identities=12% Similarity=0.096 Sum_probs=26.7
Q ss_pred CCCEEEEeCCccchHHHHHHHHHHHhCCeEEEEeCC
Q 019910 140 IVTDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRG 175 (334)
Q Consensus 140 g~~~VVt~Gg~qsNh~~AvAaaaa~~Gl~~~ivv~~ 175 (334)
...+|+-+|+ |.-|..+|...++.|.+++++-+.
T Consensus 18 ~~~~v~IiG~--G~iG~~la~~L~~~g~~V~vid~~ 51 (155)
T 2g1u_A 18 KSKYIVIFGC--GRLGSLIANLASSSGHSVVVVDKN 51 (155)
T ss_dssp CCCEEEEECC--SHHHHHHHHHHHHTTCEEEEEESC
T ss_pred CCCcEEEECC--CHHHHHHHHHHHhCCCeEEEEECC
Confidence 3456666775 889999999999999988777554
No 137
>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*
Probab=30.18 E-value=46 Score=29.34 Aligned_cols=29 Identities=24% Similarity=0.308 Sum_probs=23.0
Q ss_pred EEEEeCCccchHHHHHHHHHHHhCCeEEEEe
Q 019910 143 DLVTCGGCQSAHATAVAVSCAERGLKSHLLL 173 (334)
Q Consensus 143 ~VVt~Gg~qsNh~~AvAaaaa~~Gl~~~ivv 173 (334)
+|+-.|| |-.|.+.|..++++|+++++|=
T Consensus 6 DvvIIG~--GpAGl~AA~~la~~g~~v~liE 34 (314)
T 4a5l_A 6 DVVIIGS--GPAAHTAAIYLGRSSLKPVMYE 34 (314)
T ss_dssp EEEEECC--SHHHHHHHHHHHHTTCCCEEEC
T ss_pred cEEEECC--CHHHHHHHHHHHHCCCCEEEEe
Confidence 3454776 5688999999999999988873
No 138
>1usg_A Leucine-specific binding protein; leucine-binding protein, X-RAY crystallography, protein structure, ABC transport systems, transport protein; 1.53A {Escherichia coli} SCOP: c.93.1.1 PDB: 1usi_A* 1usk_A 2lbp_A 1z15_A 1z16_A 1z17_A 1z18_A 2liv_A
Probab=30.08 E-value=2.8e+02 Score=24.23 Aligned_cols=36 Identities=11% Similarity=-0.194 Sum_probs=28.1
Q ss_pred CCCEEEEcCCchhHHHHHHHHHHHcCCCCeEEEEEec
Q 019910 293 RAIKFVVDAGTGTTAVGLGLGAICLGCVPLFNTLLVK 329 (334)
Q Consensus 293 ~~D~Vvvp~GtGgt~aGl~~g~k~lg~~~~VigV~~~ 329 (334)
.||.||++ +.+..+.++...++.+|..+.+++.+..
T Consensus 193 ~~d~i~~~-~~~~~a~~~~~~~~~~g~~~~~~~~~~~ 228 (346)
T 1usg_A 193 NIDFVYYG-GYYPEMGQMLRQARSVGLKTQFMGPEGV 228 (346)
T ss_dssp TCCEEEEE-SCHHHHHHHHHHHHHTTCCCEEEECGGG
T ss_pred CCCEEEEc-CcchHHHHHHHHHHHcCCCCeEEecCCC
Confidence 47888775 4567788999999999998888876443
No 139
>3clk_A Transcription regulator; 11017J, PSI-II, NYSGXRC, dimer, structural genomics, protein structure initiative; 2.08A {Lactobacillus plantarum WCFS1}
Probab=30.05 E-value=1.1e+02 Score=26.40 Aligned_cols=35 Identities=14% Similarity=0.081 Sum_probs=27.7
Q ss_pred CCCCEEEEcCCchhHHHHHHHHHHHcCC----CCeEEEEEe
Q 019910 292 KRAIKFVVDAGTGTTAVGLGLGAICLGC----VPLFNTLLV 328 (334)
Q Consensus 292 ~~~D~Vvvp~GtGgt~aGl~~g~k~lg~----~~~VigV~~ 328 (334)
..+|.||+ .+...+.|+..+++.+|. ++.|+|++-
T Consensus 184 ~~~~ai~~--~~d~~a~g~~~al~~~g~~vP~di~vvg~d~ 222 (290)
T 3clk_A 184 TDLTGIIA--ASDMTAIGILNQASSFGIEVPKDLSIVSIDG 222 (290)
T ss_dssp CCCSEEEE--SSHHHHHHHHHHHHHTTCCTTTTCEEEEEEC
T ss_pred CCCcEEEE--CCcHHHHHHHHHHHHcCCCCCCceEEEEeCC
Confidence 46899887 456789999999999985 467888864
No 140
>4f06_A Extracellular ligand-binding receptor; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: MSE PHB; 1.30A {Rhodopseudomonas palustris} PDB: 4evs_A*
Probab=30.00 E-value=3.1e+02 Score=24.72 Aligned_cols=28 Identities=18% Similarity=0.032 Sum_probs=23.1
Q ss_pred CCCEEEEcCCchhHHHHHHHHHHHcCCC
Q 019910 293 RAIKFVVDAGTGTTAVGLGLGAICLGCV 320 (334)
Q Consensus 293 ~~D~Vvvp~GtGgt~aGl~~g~k~lg~~ 320 (334)
.||.|++....|.....+...++..+..
T Consensus 194 ~pd~v~~~~~~~~~~~~~~~~~~~~g~~ 221 (371)
T 4f06_A 194 GADMIFTFLPAGPPTLGFVKAYIDNGLK 221 (371)
T ss_dssp TCSEEEEECCTTHHHHHHHHHHHHTTTT
T ss_pred CCCEEEEEeccCchhhHHHHHHHHhhhh
Confidence 4899988888888888888888888765
No 141
>3tg2_A Vibriobactin-specific isochorismatase; hydrolase; HET: ISC PGE; 1.10A {Vibrio cholerae} PDB: 3tb4_A*
Probab=29.72 E-value=66 Score=28.28 Aligned_cols=40 Identities=13% Similarity=0.120 Sum_probs=31.7
Q ss_pred HHhcCCCEEEEeCCccchHH-HHHHHHHHHhCCeEEEEeCCC
Q 019910 136 LEDHIVTDLVTCGGCQSAHA-TAVAVSCAERGLKSHLLLRGE 176 (334)
Q Consensus 136 a~~~g~~~VVt~Gg~qsNh~-~AvAaaaa~~Gl~~~ivv~~~ 176 (334)
.++.|+++||-||- ..|.| .++|.-|..+|++++++.+..
T Consensus 133 L~~~gi~~lii~G~-~t~~CV~~Ta~da~~~Gy~v~vv~Da~ 173 (223)
T 3tg2_A 133 LRETGRDQLIITGV-YAHIGILSTALDAFMFDIQPFVIGDGV 173 (223)
T ss_dssp HHHHTCCEEEEEEE-CTTTHHHHHHHHHHHTTCEEEEEEEEE
T ss_pred HHhcCcCceEEeec-ccChHHHHHHHHHHHCCCEEEEeCccc
Confidence 35789999998875 55555 578888999999999988763
No 142
>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*
Probab=29.66 E-value=54 Score=29.13 Aligned_cols=28 Identities=7% Similarity=0.026 Sum_probs=22.0
Q ss_pred EEEeCCccchHHHHHHHHHHHhCCeEEEEe
Q 019910 144 LVTCGGCQSAHATAVAVSCAERGLKSHLLL 173 (334)
Q Consensus 144 VVt~Gg~qsNh~~AvAaaaa~~Gl~~~ivv 173 (334)
|+-.|| |-.|.+.|..++++|+++++|=
T Consensus 9 VvIIGa--GpAGlsAA~~lar~g~~v~lie 36 (304)
T 4fk1_A 9 CAVIGA--GPAGLNASLVLGRARKQIALFD 36 (304)
T ss_dssp EEEECC--SHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEECC--CHHHHHHHHHHHHCCCCEEEEe
Confidence 444676 5688888999999999988874
No 143
>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*
Probab=29.63 E-value=23 Score=31.40 Aligned_cols=34 Identities=24% Similarity=0.081 Sum_probs=26.0
Q ss_pred CEEEEcCCchhHHHHHHHHHHHcCCCCeEEEEEecc
Q 019910 295 IKFVVDAGTGTTAVGLGLGAICLGCVPLFNTLLVKL 330 (334)
Q Consensus 295 D~Vvvp~GtGgt~aGl~~g~k~lg~~~~VigV~~~g 330 (334)
..-|+++|+|+-..++..+. ..+..+|++||++.
T Consensus 81 ~~~vLDiG~G~G~~~i~la~--~~~~~~v~~vD~s~ 114 (249)
T 3g89_A 81 PLRVLDLGTGAGFPGLPLKI--VRPELELVLVDATR 114 (249)
T ss_dssp SCEEEEETCTTTTTHHHHHH--HCTTCEEEEEESCH
T ss_pred CCEEEEEcCCCCHHHHHHHH--HCCCCEEEEEECCH
Confidence 45688888888887777654 34889999999864
No 144
>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A*
Probab=29.62 E-value=48 Score=32.32 Aligned_cols=31 Identities=26% Similarity=0.340 Sum_probs=24.5
Q ss_pred EEEEeCCccchHHHHHHHHHHHhCCeEEEEeCC
Q 019910 143 DLVTCGGCQSAHATAVAVSCAERGLKSHLLLRG 175 (334)
Q Consensus 143 ~VVt~Gg~qsNh~~AvAaaaa~~Gl~~~ivv~~ 175 (334)
+||..|+ |..|.+.|..+++.|++++|+=..
T Consensus 43 DVvVVGa--G~AGl~AA~~aa~~G~~V~vlEk~ 73 (510)
T 4at0_A 43 DVVVAGY--GIAGVAASIEAARAGADVLVLERT 73 (510)
T ss_dssp EEEEECC--SHHHHHHHHHHHHTTCCEEEECSS
T ss_pred CEEEECC--CHHHHHHHHHHHHCCCcEEEEeCC
Confidence 4555786 789999999999999987766443
No 145
>3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human hydroxysteroid dehydrogenase like 2, SDHL2, STR genomics, structural genomics consortium; HET: NAP; 2.25A {Homo sapiens}
Probab=29.57 E-value=3.3e+02 Score=24.98 Aligned_cols=36 Identities=19% Similarity=0.246 Sum_probs=27.0
Q ss_pred CCCEEEEeCCccchHHHHHHHHHHHhCCeEEEEeCCCC
Q 019910 140 IVTDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGEQ 177 (334)
Q Consensus 140 g~~~VVt~Gg~qsNh~~AvAaaaa~~Gl~~~ivv~~~~ 177 (334)
|.+.|| +|+ .+--|.++|...++.|.+++++-+...
T Consensus 45 gk~vlV-TGa-s~GIG~aia~~La~~Ga~Vvl~~r~~~ 80 (346)
T 3kvo_A 45 GCTVFI-TGA-SRGIGKAIALKAAKDGANIVIAAKTAQ 80 (346)
T ss_dssp TCEEEE-ETT-TSHHHHHHHHHHHTTTCEEEEEESCCS
T ss_pred CCEEEE-eCC-ChHHHHHHHHHHHHCCCEEEEEECChh
Confidence 444455 455 477899999999999999888877644
No 146
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=29.49 E-value=3e+02 Score=24.44 Aligned_cols=35 Identities=20% Similarity=0.092 Sum_probs=27.0
Q ss_pred CCCCEEEEcCCchhHHHHHHHHHHHcCC----CCeEEEEEe
Q 019910 292 KRAIKFVVDAGTGTTAVGLGLGAICLGC----VPLFNTLLV 328 (334)
Q Consensus 292 ~~~D~Vvvp~GtGgt~aGl~~g~k~lg~----~~~VigV~~ 328 (334)
+++|.||+ .+...+.|+..+++..|. ++.|+|++-
T Consensus 204 ~~~~aI~~--~~d~~a~g~~~al~~~G~~vP~di~vvg~d~ 242 (350)
T 3h75_A 204 PKTQLVWS--ANDEMALGAMQAARELGRKPGTDLLFSGVNS 242 (350)
T ss_dssp TTEEEEEE--SSHHHHHHHHHHHHHTTCCBTTTBEEEEESC
T ss_pred CCcCEEEE--CChHHHHHHHHHHHHcCCCCCCCeEEEecCC
Confidence 35777776 456788899999999995 478888763
No 147
>4evq_A Putative ABC transporter subunit, substrate-bindi component; structural genomics, PSI-biology, midwest center for structu genomics; HET: MSE PHB; 1.40A {Rhodopseudomonas palustris} PDB: 4evr_A
Probab=29.35 E-value=3e+02 Score=24.39 Aligned_cols=34 Identities=6% Similarity=-0.311 Sum_probs=28.4
Q ss_pred CCCEEEEcCCchhHHHHHHHHHHHcCCCCeEEEEE
Q 019910 293 RAIKFVVDAGTGTTAVGLGLGAICLGCVPLFNTLL 327 (334)
Q Consensus 293 ~~D~Vvvp~GtGgt~aGl~~g~k~lg~~~~VigV~ 327 (334)
.||.||++ +++..+.++...++..|..+.+++..
T Consensus 206 ~~dai~~~-~~~~~a~~~~~~~~~~g~~vp~~~~~ 239 (375)
T 4evq_A 206 KPDCVYAF-FSGGGALKFIKDYAAANLGIPLWGPG 239 (375)
T ss_dssp CCSEEEEE-CCTHHHHHHHHHHHHTTCCCCEEEEG
T ss_pred CCCEEEEe-cCcchHHHHHHHHHHcCCCceEEecC
Confidence 47888774 56688999999999999999998874
No 148
>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1
Probab=29.23 E-value=55 Score=31.25 Aligned_cols=34 Identities=29% Similarity=0.387 Sum_probs=25.7
Q ss_pred cCCCEEEEeCCccchHHHHHHHHHHHhCCeEEEEeCC
Q 019910 139 HIVTDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRG 175 (334)
Q Consensus 139 ~g~~~VVt~Gg~qsNh~~AvAaaaa~~Gl~~~ivv~~ 175 (334)
...+.|| .|| |-.|.++|..+++.|++++++=+.
T Consensus 25 ~~~dVvI-IGg--G~aGl~aA~~la~~G~~V~llEk~ 58 (447)
T 2i0z_A 25 MHYDVIV-IGG--GPSGLMAAIGAAEEGANVLLLDKG 58 (447)
T ss_dssp CCCSEEE-ECC--SHHHHHHHHHHHHTTCCEEEECSS
T ss_pred CCCCEEE-ECC--cHHHHHHHHHHHHCCCCEEEEECC
Confidence 3445555 776 779999999999999987777443
No 149
>1o98_A 2,3-bisphosphoglycerate-independent phosphoglycerate mutase; isomerase, alpha/beta-type structure; HET: 2PG; 1.4A {Bacillus stearothermophilus} SCOP: c.105.1.1 c.76.1.3 PDB: 1ejj_A* 1eqj_A* 1o99_A* 2ify_A
Probab=29.21 E-value=87 Score=31.45 Aligned_cols=49 Identities=29% Similarity=0.358 Sum_probs=37.3
Q ss_pred HHHhhhHHHHhcCC----CEEEEeCCccc--hHHHHHHHHHHHhCCe---EEEEeCCC
Q 019910 128 KMDALLPLLEDHIV----TDLVTCGGCQS--AHATAVAVSCAERGLK---SHLLLRGE 176 (334)
Q Consensus 128 kL~~lL~~a~~~g~----~~VVt~Gg~qs--Nh~~AvAaaaa~~Gl~---~~ivv~~~ 176 (334)
.+..++..+++.+. -++++-||..| +|..|+.-.|++.|++ .|+|+.+.
T Consensus 96 ~~~~~~~~~~~~~~~~H~~gl~sdggvhsh~~hl~~l~~~a~~~g~~~v~~H~~~dGr 153 (511)
T 1o98_A 96 TFLAAMNHVKQHGTSLHLFGLLSDGGVHSHIHHLYALLRLAAKEGVKRVYIHGFLDGR 153 (511)
T ss_dssp HHHHHHHHHHHHTCCEEEEEECSSCCSSCCHHHHHHHHHHHHHTTCCCEEEEEEECSS
T ss_pred HHHHHHHHHHhcCCeEEEEEeccCCCCccHHHHHHHHHHHHHHCCCCeEEEEEEccCC
Confidence 35556677766443 34567888877 8999999999999995 68899883
No 150
>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*
Probab=29.06 E-value=54 Score=29.82 Aligned_cols=31 Identities=26% Similarity=0.358 Sum_probs=24.8
Q ss_pred EEEEeCCccchHHHHHHHHHHHhCCeEEEEeCC
Q 019910 143 DLVTCGGCQSAHATAVAVSCAERGLKSHLLLRG 175 (334)
Q Consensus 143 ~VVt~Gg~qsNh~~AvAaaaa~~Gl~~~ivv~~ 175 (334)
+||-.|| |=.|.++|+.+++.|++++++=+.
T Consensus 19 dvvIIGg--G~~Gl~~A~~La~~G~~V~llE~~ 49 (382)
T 1ryi_A 19 EAVVIGG--GIIGSAIAYYLAKENKNTALFESG 49 (382)
T ss_dssp EEEEECC--SHHHHHHHHHHHHTTCCEEEECSS
T ss_pred CEEEECc--CHHHHHHHHHHHhCCCcEEEEeCC
Confidence 4555776 679999999999999998877554
No 151
>3cgv_A Geranylgeranyl reductase related protein; NP_393992.1, geranylgeranyl bacteriochlorophyll reductase- like FIXC homolog; HET: MSE FAD UNL; 1.60A {Thermoplasma acidophilum dsm 1728} PDB: 3oz2_A*
Probab=28.94 E-value=55 Score=29.86 Aligned_cols=32 Identities=25% Similarity=0.435 Sum_probs=24.9
Q ss_pred EEEEeCCccchHHHHHHHHHHHhCCeEEEEeCCC
Q 019910 143 DLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGE 176 (334)
Q Consensus 143 ~VVt~Gg~qsNh~~AvAaaaa~~Gl~~~ivv~~~ 176 (334)
+|+-.|| |=.|.++|+..++.|++++++=+..
T Consensus 6 dVvIvG~--G~aGl~~A~~La~~G~~V~l~E~~~ 37 (397)
T 3cgv_A 6 DVLVVGG--GPGGSTAARYAAKYGLKTLMIEKRP 37 (397)
T ss_dssp EEEEECC--SHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred CEEEECc--CHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 3555776 6689999999999999988875543
No 152
>3txy_A Isochorismatase family protein family; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.70A {Burkholderia thailandensis} SCOP: c.33.1.0
Probab=28.93 E-value=81 Score=26.95 Aligned_cols=38 Identities=16% Similarity=0.142 Sum_probs=30.3
Q ss_pred HhcCCCEEEEeCCccchHH-HHHHHHHHHhCCeEEEEeCC
Q 019910 137 EDHIVTDLVTCGGCQSAHA-TAVAVSCAERGLKSHLLLRG 175 (334)
Q Consensus 137 ~~~g~~~VVt~Gg~qsNh~-~AvAaaaa~~Gl~~~ivv~~ 175 (334)
++.|+++||-||- ..|.| .++|..|..+|++++++...
T Consensus 122 ~~~gi~~lvi~G~-~t~~CV~~Ta~~a~~~G~~v~v~~Da 160 (199)
T 3txy_A 122 RRRGITDIVLTGI-ATNIGVESTAREAYENNYNVVVVSDA 160 (199)
T ss_dssp HHTTCCEEEEEEE-CTTTHHHHHHHHHHHTTCEEEEEEEE
T ss_pred HhCCCCEEEEEee-ccCHHHHHHHHHHHHCCCEEEEecHh
Confidence 4679999998875 55655 57788899999999988765
No 153
>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A*
Probab=28.72 E-value=56 Score=30.34 Aligned_cols=32 Identities=13% Similarity=0.212 Sum_probs=25.1
Q ss_pred EEEEeCCccchHHHHHHHHHHHhCCeEEEEeCCC
Q 019910 143 DLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGE 176 (334)
Q Consensus 143 ~VVt~Gg~qsNh~~AvAaaaa~~Gl~~~ivv~~~ 176 (334)
+|+..|| |=.|.++|.+.++.|++++|+=+..
T Consensus 25 dV~IVGa--G~aGl~~A~~La~~G~~V~v~E~~~ 56 (407)
T 3rp8_A 25 KAIVIGA--GIGGLSAAVALKQSGIDCDVYEAVK 56 (407)
T ss_dssp EEEEECC--SHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred EEEEECC--CHHHHHHHHHHHhCCCCEEEEeCCC
Confidence 4544776 6689999999999999988885543
No 154
>2fq1_A Isochorismatase; ENTB, NRPS, multi-domain, ACP, hydrolase; 2.30A {Escherichia coli}
Probab=28.66 E-value=74 Score=28.74 Aligned_cols=40 Identities=15% Similarity=0.167 Sum_probs=31.5
Q ss_pred HHhcCCCEEEEeCCccchH-HHHHHHHHHHhCCeEEEEeCCC
Q 019910 136 LEDHIVTDLVTCGGCQSAH-ATAVAVSCAERGLKSHLLLRGE 176 (334)
Q Consensus 136 a~~~g~~~VVt~Gg~qsNh-~~AvAaaaa~~Gl~~~ivv~~~ 176 (334)
.++.|+++||-||- ..|. ..++|..|..+|++++++....
T Consensus 140 L~~~gi~~lvi~Gv-~T~~CV~~Ta~dA~~~Gy~V~vv~Da~ 180 (287)
T 2fq1_A 140 LKESGRNQLIITGV-YAHIGCMTTATDAFMRDIKPFMVADAL 180 (287)
T ss_dssp HHHTTCCEEEEEEE-CTTTHHHHHHHHHHHTTCEEEEEEEEE
T ss_pred HHHCCCCEEEEEEe-CcchHHHHHHHHHHHCCCEEEEechhc
Confidence 35789999998875 5565 4577888999999999987763
No 155
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=28.42 E-value=67 Score=27.61 Aligned_cols=38 Identities=18% Similarity=0.309 Sum_probs=28.1
Q ss_pred HhhhHHHHhcCCCEEEEeCCccchHHHHHHHHHHHhCCeEEEEeCC
Q 019910 130 DALLPLLEDHIVTDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRG 175 (334)
Q Consensus 130 ~~lL~~a~~~g~~~VVt~Gg~qsNh~~AvAaaaa~~Gl~~~ivv~~ 175 (334)
...+..+++.|++.|| +|+ -+.-.|+++|++++++..+
T Consensus 132 ~~~i~~l~~~G~~vvV-G~~-------~~~~~A~~~Gl~~vli~sg 169 (196)
T 2q5c_A 132 TTLISKVKTENIKIVV-SGK-------TVTDEAIKQGLYGETINSG 169 (196)
T ss_dssp HHHHHHHHHTTCCEEE-ECH-------HHHHHHHHTTCEEEECCCC
T ss_pred HHHHHHHHHCCCeEEE-CCH-------HHHHHHHHcCCcEEEEecC
Confidence 4457778899999988 332 3466789999998887654
No 156
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=28.35 E-value=1e+02 Score=27.44 Aligned_cols=35 Identities=23% Similarity=0.143 Sum_probs=28.3
Q ss_pred CCCCEEEEcCCchhHHHHHHHHHHHcCCC----CeEEEEEe
Q 019910 292 KRAIKFVVDAGTGTTAVGLGLGAICLGCV----PLFNTLLV 328 (334)
Q Consensus 292 ~~~D~Vvvp~GtGgt~aGl~~g~k~lg~~----~~VigV~~ 328 (334)
+.||.||+ .+...+.|+..+++.+|.. +.|+|++-
T Consensus 238 ~~~~ai~~--~nd~~A~g~~~al~~~G~~vP~disvvg~D~ 276 (332)
T 2hsg_A 238 EKPTAIFV--GTDEMALGVIHGAQDRGLNVPNDLEIIGFDN 276 (332)
T ss_dssp SCCSEEEE--SSHHHHHHHHHHHHHTTCCHHHHCEEEEESC
T ss_pred CCCeEEEE--CChHHHHHHHHHHHHcCCCCCCCeEEEEECC
Confidence 46899986 5778899999999999964 67888863
No 157
>3ot4_A Putative isochorismatase; NICF, maleamate hydrolase, hydrol; 2.40A {Bordetella bronchiseptica} PDB: 3uao_A
Probab=28.21 E-value=87 Score=27.78 Aligned_cols=39 Identities=18% Similarity=0.253 Sum_probs=31.4
Q ss_pred HhcCCCEEEEeCCccchHH-HHHHHHHHHhCCeEEEEeCCC
Q 019910 137 EDHIVTDLVTCGGCQSAHA-TAVAVSCAERGLKSHLLLRGE 176 (334)
Q Consensus 137 ~~~g~~~VVt~Gg~qsNh~-~AvAaaaa~~Gl~~~ivv~~~ 176 (334)
++.|+++||-||- ..|.| .++|.-|..+|++++++....
T Consensus 155 ~~~gi~~lvi~G~-~T~~CV~~Ta~da~~~Gy~V~vv~Da~ 194 (236)
T 3ot4_A 155 AQRGVQTLLVAGA-TTSGCVRASVVDAMSAGFRPLVLSDCV 194 (236)
T ss_dssp HHTTCCEEEEEES-CTTTHHHHHHHHHHHHTCEEEEEEEEE
T ss_pred HHCCCCEEEEeCc-cCcHHHHHHHHHHHHCCCEEEEechhc
Confidence 5689999998876 55665 488889999999999887653
No 158
>3r7f_A Aspartate carbamoyltransferase; aspartate transcarbamoylase, carbamoyl phosphate, transferas catalytic cycle; 2.10A {Bacillus subtilis} PDB: 3r7d_A 3r7l_A* 2at2_A
Probab=28.20 E-value=1e+02 Score=28.69 Aligned_cols=36 Identities=17% Similarity=0.033 Sum_probs=28.8
Q ss_pred CEEEEeCCcc-chHHHHHHHHHHHhCCeEEEEeCCCC
Q 019910 142 TDLVTCGGCQ-SAHATAVAVSCAERGLKSHLLLRGEQ 177 (334)
Q Consensus 142 ~~VVt~Gg~q-sNh~~AvAaaaa~~Gl~~~ivv~~~~ 177 (334)
.+|+-+|-.. +|-+++++.+|+++|++++++.|+..
T Consensus 148 lkva~vGD~~~~rva~Sl~~~~~~~G~~v~~~~P~~~ 184 (304)
T 3r7f_A 148 LTVSIHGDIKHSRVARSNAEVLTRLGARVLFSGPSEW 184 (304)
T ss_dssp CEEEEESCCTTCHHHHHHHHHHHHTTCEEEEESCGGG
T ss_pred CEEEEEcCCCCcchHHHHHHHHHHcCCEEEEECCCcc
Confidence 3566677543 67899999999999999999988743
No 159
>3oqp_A Putative isochorismatase; catalytic triad, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; 1.22A {Burkholderia xenovorans}
Probab=28.18 E-value=79 Score=27.48 Aligned_cols=38 Identities=13% Similarity=0.197 Sum_probs=30.9
Q ss_pred HhcCCCEEEEeCCccchHH-HHHHHHHHHhCCeEEEEeCC
Q 019910 137 EDHIVTDLVTCGGCQSAHA-TAVAVSCAERGLKSHLLLRG 175 (334)
Q Consensus 137 ~~~g~~~VVt~Gg~qsNh~-~AvAaaaa~~Gl~~~ivv~~ 175 (334)
++.|+++||-||- ..|.| .++|..|..+|++++++-+.
T Consensus 105 ~~~gi~~lvi~G~-~T~~CV~~Ta~dA~~~Gy~V~vv~Da 143 (211)
T 3oqp_A 105 AARQIDTLTVTGY-MTHNCDASTINHAVHSGLAVEFLHDA 143 (211)
T ss_dssp HTTTCCEEEEEEE-CTTTHHHHHHHHHHHTTCEEEEEEEE
T ss_pred HhCCCCEEEEEee-ccCHHHHHHHHHHHHCCCeEEEechh
Confidence 5789999998875 55665 57888899999999998765
No 160
>1yvv_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae} PDB: 3kkj_A*
Probab=28.18 E-value=54 Score=29.17 Aligned_cols=30 Identities=17% Similarity=0.254 Sum_probs=23.7
Q ss_pred EEEeCCccchHHHHHHHHHHHhCCeEEEEeCC
Q 019910 144 LVTCGGCQSAHATAVAVSCAERGLKSHLLLRG 175 (334)
Q Consensus 144 VVt~Gg~qsNh~~AvAaaaa~~Gl~~~ivv~~ 175 (334)
|+..|| |=.|.++|+..++.|++++|+=+.
T Consensus 5 V~IIGa--G~~Gl~~A~~L~~~G~~V~vlE~~ 34 (336)
T 1yvv_A 5 IAIIGT--GIAGLSAAQALTAAGHQVHLFDKS 34 (336)
T ss_dssp EEEECC--SHHHHHHHHHHHHTTCCEEEECSS
T ss_pred EEEECC--cHHHHHHHHHHHHCCCcEEEEECC
Confidence 444776 669999999999999998877443
No 161
>1jzt_A Hypothetical 27.5 kDa protein in SPX19-GCR2 inter region; yeast hypothetical protein, structural genomics, selenomethi PSI; 1.94A {Saccharomyces cerevisiae} SCOP: c.104.1.1
Probab=28.14 E-value=99 Score=27.68 Aligned_cols=33 Identities=12% Similarity=0.083 Sum_probs=24.8
Q ss_pred CEEEEeCCccchH---HHHHHHHHHHhCCeEEEEeCCC
Q 019910 142 TDLVTCGGCQSAH---ATAVAVSCAERGLKSHLLLRGE 176 (334)
Q Consensus 142 ~~VVt~Gg~qsNh---~~AvAaaaa~~Gl~~~ivv~~~ 176 (334)
+-+|-||. ||. |.++|..-+..|+++.++++..
T Consensus 60 ~v~VlcG~--GNNGGDGlv~AR~L~~~G~~V~v~~~~~ 95 (246)
T 1jzt_A 60 HVFVIAGP--GNNGGDGLVCARHLKLFGYNPVVFYPKR 95 (246)
T ss_dssp EEEEEECS--SHHHHHHHHHHHHHHHTTCCEEEECCCC
T ss_pred eEEEEECC--CCCHHHHHHHHHHHHHCCCeEEEEEcCC
Confidence 44566885 777 4677777788899999998753
No 162
>1ml4_A Aspartate transcarbamoylase; beta pleated sheet, protein inhibitor complex, transferase; HET: PAL; 1.80A {Pyrococcus abyssi} SCOP: c.78.1.1 c.78.1.1
Probab=27.94 E-value=1.2e+02 Score=28.28 Aligned_cols=57 Identities=11% Similarity=0.036 Sum_probs=38.9
Q ss_pred CCCCCCChhHHHHHHHhhhHHHHhcCC-C--EEEEeCCc-cchHHHHHHHHHHHhCCeEEEEeCCCC
Q 019910 115 DLLHPLVNGNKARKMDALLPLLEDHIV-T--DLVTCGGC-QSAHATAVAVSCAERGLKSHLLLRGEQ 177 (334)
Q Consensus 115 Dl~~p~~gGnK~RkL~~lL~~a~~~g~-~--~VVt~Gg~-qsNh~~AvAaaaa~~Gl~~~ivv~~~~ 177 (334)
|..||+ -.|.-++.--+..|. + +|+-+|-. .||-+++++.+++++|++.+++.|++.
T Consensus 132 ~~~HPt------Q~LaDl~Ti~e~~g~l~gl~va~vGD~~~~rva~Sl~~~~~~~G~~v~~~~P~~~ 192 (308)
T 1ml4_A 132 SNQHPT------QTLLDLYTIKKEFGRIDGLKIGLLGDLKYGRTVHSLAEALTFYDVELYLISPELL 192 (308)
T ss_dssp TSCCHH------HHHHHHHHHHHHSSCSSSEEEEEESCTTTCHHHHHHHHHGGGSCEEEEEECCGGG
T ss_pred CccCcH------HHHHHHHHHHHHhCCCCCeEEEEeCCCCcCchHHHHHHHHHHCCCEEEEECCccc
Confidence 566772 234333333344453 2 45557764 379999999999999999999999754
No 163
>3csu_A Protein (aspartate carbamoyltransferase); transferase (carbamoyl-P; 1.88A {Escherichia coli} SCOP: c.78.1.1 c.78.1.1 PDB: 1r0b_A* 1q95_A* 1raa_A* 1rab_A* 1rac_A* 1rad_A* 1rae_A* 1raf_A* 1rag_A* 1rah_A* 1rai_A* 1r0c_A* 1za2_A* 1za1_A* 2fzc_A* 2fzg_A* 2fzk_A* 2h3e_A* 2ipo_A* 2qg9_A ...
Probab=27.83 E-value=1.6e+02 Score=27.44 Aligned_cols=36 Identities=8% Similarity=0.074 Sum_probs=29.5
Q ss_pred CEEEEeCCc-cchHHHHHHHHHHHh-CCeEEEEeCCCC
Q 019910 142 TDLVTCGGC-QSAHATAVAVSCAER-GLKSHLLLRGEQ 177 (334)
Q Consensus 142 ~~VVt~Gg~-qsNh~~AvAaaaa~~-Gl~~~ivv~~~~ 177 (334)
.+|+-+|-. .+|-+++++.+++++ |++++++.|+..
T Consensus 155 l~va~vGD~~~~rva~Sl~~~~~~~~g~~v~~~~P~~~ 192 (310)
T 3csu_A 155 LHVAMVGDLKYGRTVHSLTQALAKFDGNRFYFIAPDAL 192 (310)
T ss_dssp CEEEEESCTTTCHHHHHHHHHHHTSSSCEEEEECCGGG
T ss_pred cEEEEECCCCCCchHHHHHHHHHhCCCCEEEEECCccc
Confidence 345557764 379999999999999 999999999754
No 164
>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A*
Probab=27.58 E-value=61 Score=29.80 Aligned_cols=34 Identities=15% Similarity=0.240 Sum_probs=26.4
Q ss_pred CEEEEeCCccchHHHHHHHHHHHhCCeEEEEeCCCC
Q 019910 142 TDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGEQ 177 (334)
Q Consensus 142 ~~VVt~Gg~qsNh~~AvAaaaa~~Gl~~~ivv~~~~ 177 (334)
.+|+..|| |=.|.++|...++.|++++|+=+...
T Consensus 12 ~dVvIVGa--G~aGl~~A~~L~~~G~~v~viE~~~~ 45 (379)
T 3alj_A 12 RRAEVAGG--GFAGLTAAIALKQNGWDVRLHEKSSE 45 (379)
T ss_dssp CEEEEECC--SHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred CeEEEECC--CHHHHHHHHHHHHCCCCEEEEecCCC
Confidence 35655776 67899999999999999888855433
No 165
>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa}
Probab=27.45 E-value=59 Score=30.01 Aligned_cols=31 Identities=13% Similarity=0.198 Sum_probs=25.1
Q ss_pred EEEEeCCccchHHHHHHHHHHHhCCeEEEEeCC
Q 019910 143 DLVTCGGCQSAHATAVAVSCAERGLKSHLLLRG 175 (334)
Q Consensus 143 ~VVt~Gg~qsNh~~AvAaaaa~~Gl~~~ivv~~ 175 (334)
+|+-.|| |=.|.++|...++.|++++|+=+.
T Consensus 8 dVvIVGa--G~aGl~~A~~L~~~G~~V~viE~~ 38 (399)
T 2x3n_A 8 DVLINGC--GIGGAMLAYLLGRQGHRVVVVEQA 38 (399)
T ss_dssp EEEEECC--SHHHHHHHHHHHHTTCCEEEECSS
T ss_pred CEEEECc--CHHHHHHHHHHHhCCCcEEEEeCC
Confidence 4555776 679999999999999998888554
No 166
>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}
Probab=27.38 E-value=63 Score=28.63 Aligned_cols=27 Identities=19% Similarity=0.332 Sum_probs=22.0
Q ss_pred EEEeCCccchHHHHHHHHHHHhCCeEEEE
Q 019910 144 LVTCGGCQSAHATAVAVSCAERGLKSHLL 172 (334)
Q Consensus 144 VVt~Gg~qsNh~~AvAaaaa~~Gl~~~iv 172 (334)
|+-.|| |=.|.+.|..++++|+++++|
T Consensus 9 vvIIG~--GpAGl~aA~~l~~~g~~V~li 35 (312)
T 4gcm_A 9 IAIIGA--GPAGMTAAVYASRANLKTVMI 35 (312)
T ss_dssp EEEECC--SHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEECC--CHHHHHHHHHHHHCCCCEEEE
Confidence 444676 558889999999999999888
No 167
>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}
Probab=27.26 E-value=85 Score=26.40 Aligned_cols=30 Identities=20% Similarity=0.011 Sum_probs=18.5
Q ss_pred EEEcCCchhHHHHHHHHHHHcCCCCeEEEEEecc
Q 019910 297 FVVDAGTGTTAVGLGLGAICLGCVPLFNTLLVKL 330 (334)
Q Consensus 297 Vvvp~GtGgt~aGl~~g~k~lg~~~~VigV~~~g 330 (334)
+=+.+|+|....-++ ...+..+|+||+++.
T Consensus 49 LDiG~G~G~~~~~l~----~~~~~~~v~~vD~s~ 78 (234)
T 3dtn_A 49 LDLGAGTGLLSAFLM----EKYPEATFTLVDMSE 78 (234)
T ss_dssp EEETCTTSHHHHHHH----HHCTTCEEEEEESCH
T ss_pred EEecCCCCHHHHHHH----HhCCCCeEEEEECCH
Confidence 445555555443333 334789999999853
No 168
>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*
Probab=27.08 E-value=50 Score=29.36 Aligned_cols=34 Identities=6% Similarity=-0.047 Sum_probs=20.3
Q ss_pred EEEcCCchhHHHHHHHHHHHcCCCCeE--EEEEecc
Q 019910 297 FVVDAGTGTTAVGLGLGAICLGCVPLF--NTLLVKL 330 (334)
Q Consensus 297 Vvvp~GtGgt~aGl~~g~k~lg~~~~V--igV~~~g 330 (334)
+=+.+|||....-++..+....+.++| +||+++.
T Consensus 57 LDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~ 92 (292)
T 2aot_A 57 LSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSA 92 (292)
T ss_dssp EEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCH
T ss_pred EEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCH
Confidence 444555665444455555555577765 9998864
No 169
>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}
Probab=26.83 E-value=65 Score=29.31 Aligned_cols=29 Identities=21% Similarity=0.276 Sum_probs=23.4
Q ss_pred EEEeCCccchHHHHHHHHHHHhCCeEEEEeC
Q 019910 144 LVTCGGCQSAHATAVAVSCAERGLKSHLLLR 174 (334)
Q Consensus 144 VVt~Gg~qsNh~~AvAaaaa~~Gl~~~ivv~ 174 (334)
|+.+|+ |=.|.++|.+.++.|++++||=+
T Consensus 4 V~IVGa--GpaGl~~A~~L~~~G~~v~v~Er 32 (412)
T 4hb9_A 4 VGIIGA--GIGGTCLAHGLRKHGIKVTIYER 32 (412)
T ss_dssp EEEECC--SHHHHHHHHHHHHTTCEEEEECS
T ss_pred EEEECc--CHHHHHHHHHHHhCCCCEEEEec
Confidence 444676 56899999999999999988843
No 170
>1vp8_A Hypothetical protein AF0103; putative pyruvate kinase, structural genomics, joint center structural genomics, JCSG; HET: MSE FMN; 1.30A {Archaeoglobus fulgidus} SCOP: c.49.1.2
Probab=26.83 E-value=2.9e+02 Score=24.27 Aligned_cols=73 Identities=12% Similarity=0.080 Sum_probs=47.0
Q ss_pred hHHHHHHHhhhHHHHhcCCCEEEEeCCccchHHHHHHHHHHHhCCeEEEEeCC-------CCCccccchhHHHHHCC-eE
Q 019910 123 GNKARKMDALLPLLEDHIVTDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRG-------EQPQILTGYNLISTIYG-KV 194 (334)
Q Consensus 123 GnK~RkL~~lL~~a~~~g~~~VVt~Gg~qsNh~~AvAaaaa~~Gl~~~ivv~~-------~~p~~~~gn~~~~~~~G-~V 194 (334)
-|-..-++..+..|++.|++.||-.+ ++|-.+..++-. ..|++.++|... .. +....+....+-.| .|
T Consensus 26 eNT~~tl~la~era~e~~Ik~iVVAS-~sG~TA~k~~e~--~~~i~lVvVTh~~GF~~pg~~-e~~~e~~~~L~~~G~~V 101 (201)
T 1vp8_A 26 ENTEETLRLAVERAKELGIKHLVVAS-SYGDTAMKALEM--AEGLEVVVVTYHTGFVREGEN-TMPPEVEEELRKRGAKI 101 (201)
T ss_dssp GGHHHHHHHHHHHHHHHTCCEEEEEC-SSSHHHHHHHHH--CTTCEEEEEECCTTSSSTTCC-SSCHHHHHHHHHTTCEE
T ss_pred ccHHHHHHHHHHHHHHcCCCEEEEEe-CCChHHHHHHHH--hcCCeEEEEeCcCCCCCCCCC-cCCHHHHHHHHhCCCEE
Confidence 36677888889999999999998554 356666544442 278898888732 11 11112334556678 77
Q ss_pred EEECC
Q 019910 195 TYVPR 199 (334)
Q Consensus 195 ~~v~~ 199 (334)
+.-..
T Consensus 102 ~t~tH 106 (201)
T 1vp8_A 102 VRQSH 106 (201)
T ss_dssp EECCC
T ss_pred EEEec
Confidence 76554
No 171
>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*
Probab=26.81 E-value=76 Score=27.84 Aligned_cols=30 Identities=27% Similarity=0.261 Sum_probs=16.4
Q ss_pred EEEcCCchhHHHHHHHHHHHcCCCCeEEEEEecc
Q 019910 297 FVVDAGTGTTAVGLGLGAICLGCVPLFNTLLVKL 330 (334)
Q Consensus 297 Vvvp~GtGgt~aGl~~g~k~lg~~~~VigV~~~g 330 (334)
-|+.+|+|+-...+ .+..+++ +|+||+++.
T Consensus 123 ~VLDiGcG~G~l~~--~la~~g~--~v~gvDi~~ 152 (254)
T 2nxc_A 123 KVLDLGTGSGVLAI--AAEKLGG--KALGVDIDP 152 (254)
T ss_dssp EEEEETCTTSHHHH--HHHHTTC--EEEEEESCG
T ss_pred EEEEecCCCcHHHH--HHHHhCC--eEEEEECCH
Confidence 34444444422222 2334565 999999854
No 172
>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei}
Probab=26.69 E-value=69 Score=29.64 Aligned_cols=31 Identities=16% Similarity=0.137 Sum_probs=24.6
Q ss_pred EEEEeCCccchHHHHHHHHHHHhCCeEEEEeCC
Q 019910 143 DLVTCGGCQSAHATAVAVSCAERGLKSHLLLRG 175 (334)
Q Consensus 143 ~VVt~Gg~qsNh~~AvAaaaa~~Gl~~~ivv~~ 175 (334)
+||..|| |-.|.+.|+..++.|.+++|+=..
T Consensus 2 dVvVIGa--GiaGLsaA~~La~~G~~V~vlE~~ 32 (425)
T 3ka7_A 2 KTVVIGA--GLGGLLSAARLSKAGHEVEVFERL 32 (425)
T ss_dssp EEEEECC--BHHHHHHHHHHHHTTCEEEEECSS
T ss_pred cEEEECC--CHHHHHHHHHHHhCCCceEEEeCC
Confidence 3555776 779999999999999998777443
No 173
>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A*
Probab=26.34 E-value=67 Score=29.19 Aligned_cols=31 Identities=26% Similarity=0.394 Sum_probs=24.7
Q ss_pred EEEEeCCccchHHHHHHHHHHHhCCeEEEEeCC
Q 019910 143 DLVTCGGCQSAHATAVAVSCAERGLKSHLLLRG 175 (334)
Q Consensus 143 ~VVt~Gg~qsNh~~AvAaaaa~~Gl~~~ivv~~ 175 (334)
+||-.|+ |=.|.++|+..++.|++++++=+.
T Consensus 8 dVvVIG~--Gi~Gls~A~~La~~G~~V~vle~~ 38 (363)
T 1c0p_A 8 RVVVLGS--GVIGLSSALILARKGYSVHILARD 38 (363)
T ss_dssp EEEEECC--SHHHHHHHHHHHHTTCEEEEEESS
T ss_pred CEEEECC--CHHHHHHHHHHHhCCCEEEEEecc
Confidence 4555776 679999999999999998777443
No 174
>3mcw_A Putative hydrolase; isochorismatase family, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.06A {Chromobacterium violaceum}
Probab=26.33 E-value=85 Score=26.79 Aligned_cols=39 Identities=18% Similarity=0.171 Sum_probs=30.8
Q ss_pred HhcCCCEEEEeCCccchHH-HHHHHHHHHhCCeEEEEeCCC
Q 019910 137 EDHIVTDLVTCGGCQSAHA-TAVAVSCAERGLKSHLLLRGE 176 (334)
Q Consensus 137 ~~~g~~~VVt~Gg~qsNh~-~AvAaaaa~~Gl~~~ivv~~~ 176 (334)
++.|+++||-||- ..|.| .++|..|..+|++++++....
T Consensus 109 ~~~gi~~lvi~G~-~T~~CV~~Ta~da~~~Gy~v~vv~Da~ 148 (198)
T 3mcw_A 109 RANGWLELVVAGV-STSNSVEATVRMAGNLGFAVCLAEDGC 148 (198)
T ss_dssp HHHTCCEEEEEEE-CTTTHHHHHHHHHHHTTCEEEEEEEEE
T ss_pred HcCCCCeEEEEEc-CcChHHHHHHHHHHHCCCEEEEeCccc
Confidence 4679999998875 56665 577888999999999887653
No 175
>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii}
Probab=26.23 E-value=75 Score=29.36 Aligned_cols=32 Identities=19% Similarity=0.350 Sum_probs=25.3
Q ss_pred EEEEeCCccchHHHHHHHHHHHhCCeEEEEeCCC
Q 019910 143 DLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGE 176 (334)
Q Consensus 143 ~VVt~Gg~qsNh~~AvAaaaa~~Gl~~~ivv~~~ 176 (334)
+|+-.|| |=.|.++|+..++.|++++++=+..
T Consensus 7 dVvIIGg--G~aGl~~A~~La~~G~~V~v~E~~~ 38 (421)
T 3nix_A 7 DVLVIGA--GPAGTVAASLVNKSGFKVKIVEKQK 38 (421)
T ss_dssp EEEEECC--SHHHHHHHHHHHTTTCCEEEECSSC
T ss_pred cEEEECC--CHHHHHHHHHHHhCCCCEEEEeCCC
Confidence 4555776 6699999999999999988885554
No 176
>2vk2_A YTFQ, ABC transporter periplasmic-binding protein YTFQ; transport protein, galactofuranose; HET: GZL; 1.20A {Escherichia coli}
Probab=26.02 E-value=1.1e+02 Score=26.75 Aligned_cols=34 Identities=9% Similarity=-0.083 Sum_probs=27.2
Q ss_pred CCCEEEEcCCchhHHHHHHHHHHHcCC----CCeEEEEEe
Q 019910 293 RAIKFVVDAGTGTTAVGLGLGAICLGC----VPLFNTLLV 328 (334)
Q Consensus 293 ~~D~Vvvp~GtGgt~aGl~~g~k~lg~----~~~VigV~~ 328 (334)
.||.||+. +..++.|+..+++..|. ++.|+|++-
T Consensus 191 ~~~ai~~~--nd~~A~g~~~al~~~G~~vP~di~vig~D~ 228 (306)
T 2vk2_A 191 NICMVYAH--NDDMVIGAIQAIKEAGLKPGKDILTGSIDG 228 (306)
T ss_dssp TCCEEEES--SHHHHHHHHHHHHHTTCCBTTTBEEEEEEC
T ss_pred CeeEEEEC--CchHHHHHHHHHHHcCCCCCCCeEEEeecC
Confidence 58888874 56789999999999985 467888863
No 177
>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A*
Probab=25.98 E-value=66 Score=29.23 Aligned_cols=31 Identities=23% Similarity=0.321 Sum_probs=24.1
Q ss_pred EEEEeCCccchHHHHHHHHHHHhCCeEEEEeCC
Q 019910 143 DLVTCGGCQSAHATAVAVSCAERGLKSHLLLRG 175 (334)
Q Consensus 143 ~VVt~Gg~qsNh~~AvAaaaa~~Gl~~~ivv~~ 175 (334)
+||-.|| |=.|.++|+..++.|++++++=+.
T Consensus 5 dvvIIGa--G~~Gl~~A~~La~~G~~V~vie~~ 35 (389)
T 2gf3_A 5 DVIVVGA--GSMGMAAGYQLAKQGVKTLLVDAF 35 (389)
T ss_dssp EEEEECC--SHHHHHHHHHHHHTTCCEEEECSS
T ss_pred CEEEECC--CHHHHHHHHHHHhCCCeEEEEeCC
Confidence 3444776 668999999999999997777444
No 178
>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli}
Probab=25.96 E-value=63 Score=29.24 Aligned_cols=32 Identities=19% Similarity=0.216 Sum_probs=24.8
Q ss_pred EEEEeCCccchHHHHHHHHHHHhCCeEEEEeCCC
Q 019910 143 DLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGE 176 (334)
Q Consensus 143 ~VVt~Gg~qsNh~~AvAaaaa~~Gl~~~ivv~~~ 176 (334)
+|+-.|| |=.|.++|+..++.|++++++=...
T Consensus 4 dvvIIG~--Gi~Gl~~A~~La~~G~~V~vle~~~ 35 (372)
T 2uzz_A 4 DLIIIGS--GSVGAAAGYYATRAGLNVLMTDAHM 35 (372)
T ss_dssp EEEESCT--THHHHHHHHHHHHTTCCEEEECSSC
T ss_pred CEEEECC--CHHHHHHHHHHHHCCCeEEEEecCC
Confidence 3455776 6799999999999999987775443
No 179
>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}
Probab=25.96 E-value=89 Score=25.56 Aligned_cols=48 Identities=8% Similarity=-0.015 Sum_probs=25.6
Q ss_pred HHHHHHHHHHhhhcCCCCCCEEEEcCCchhHHHHHHHHHHHcCCCCeEEEEEecc
Q 019910 276 VFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGLGAICLGCVPLFNTLLVKL 330 (334)
Q Consensus 276 ~~~la~EI~eq~~~g~~~~D~Vvvp~GtGgt~aGl~~g~k~lg~~~~VigV~~~g 330 (334)
+..++.++.+.+. ......+=+.+|+|....-++. . +..+|+||+++.
T Consensus 29 ~~~~~~~~~~~~~--~~~~~vLdiG~G~G~~~~~l~~----~-~~~~v~~~D~s~ 76 (219)
T 3dlc_A 29 YPIIAENIINRFG--ITAGTCIDIGSGPGALSIALAK----Q-SDFSIRALDFSK 76 (219)
T ss_dssp HHHHHHHHHHHHC--CCEEEEEEETCTTSHHHHHHHH----H-SEEEEEEEESCH
T ss_pred cHHHHHHHHHhcC--CCCCEEEEECCCCCHHHHHHHH----c-CCCeEEEEECCH
Confidence 3446667766652 1112234445555544333332 2 678999999853
No 180
>1dxh_A Ornithine carbamoyltransferase; transcarbamylase; 2.50A {Pseudomonas aeruginosa} SCOP: c.78.1.1 c.78.1.1 PDB: 1ort_A
Probab=25.95 E-value=1.5e+02 Score=28.04 Aligned_cols=65 Identities=12% Similarity=0.138 Sum_probs=43.8
Q ss_pred CeEEEEeCCCCCCCChhHHHHHHHhhhHHHHhcC-C---CEEEEeCCccchHHHHHHHHHHHhCCeEEEEeCCCC
Q 019910 107 RCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHI-V---TDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGEQ 177 (334)
Q Consensus 107 ~~lyvKrDDl~~p~~gGnK~RkL~~lL~~a~~~g-~---~~VVt~Gg~qsNh~~AvAaaaa~~Gl~~~ivv~~~~ 177 (334)
+.|+==.+|..||+ -.|.-++.--+..| . .+|+.+|-..+|-+++++.+|+++|++++++.|+..
T Consensus 123 vPVINa~~~~~HPt------Q~LaDl~Ti~e~~g~~l~gl~va~vGD~~~~va~Sl~~~~~~~G~~v~~~~P~~~ 191 (335)
T 1dxh_A 123 VPVFNGLTDEYHPT------QMLADVLTMREHSDKPLHDISYAYLGDARNNMGNSLLLIGAKLGMDVRIAAPKAL 191 (335)
T ss_dssp SCEEEEECSSCCHH------HHHHHHHHHHHTCSSCGGGCEEEEESCCSSHHHHHHHHHHHHTTCEEEEECCGGG
T ss_pred CCEEcCCCCCCCcH------HHHHHHHHHHHHcCCCcCCeEEEEecCCccchHHHHHHHHHHcCCEEEEECCccc
Confidence 33444446677883 23433343334455 2 456667765579999999999999999999999754
No 181
>2hqb_A Transcriptional activator of COMK gene; berkeley structure genomics center target 1957B, structural genomics, PSI; 2.70A {Bacillus halodurans}
Probab=25.75 E-value=90 Score=27.82 Aligned_cols=31 Identities=10% Similarity=-0.159 Sum_probs=25.4
Q ss_pred CCEEEEcCCchhHHHHHHHHHHHcCCCCeEEEEEe
Q 019910 294 AIKFVVDAGTGTTAVGLGLGAICLGCVPLFNTLLV 328 (334)
Q Consensus 294 ~D~Vvvp~GtGgt~aGl~~g~k~lg~~~~VigV~~ 328 (334)
+|.||+ .++.++.|+..++++.| +.|+|++-
T Consensus 182 ~daI~~--~~D~~a~Gv~~a~~e~G--v~viG~D~ 212 (296)
T 2hqb_A 182 VDVFYP--AGDGYHVPVVEAIKDQG--DFAIGYVG 212 (296)
T ss_dssp CCEEEC--CCTTTHHHHHHHHHHHT--CEEEEEES
T ss_pred CcEEEE--CCCCCCHHHHHHHHHcC--CEEEEEec
Confidence 788875 45567889999999998 88999975
No 182
>1x9g_A Putative MAR1; structural genomics, protein structure initiative, SGPP, PSI structural genomics of pathogenic protozoa consortium; 2.41A {Leishmania donovani} SCOP: c.33.1.3 PDB: 1xn4_A
Probab=25.69 E-value=67 Score=27.72 Aligned_cols=36 Identities=14% Similarity=0.065 Sum_probs=28.7
Q ss_pred CCCEEEEeCCccchHH-HHHHHHHHHhCCeEEEEeCCC
Q 019910 140 IVTDLVTCGGCQSAHA-TAVAVSCAERGLKSHLLLRGE 176 (334)
Q Consensus 140 g~~~VVt~Gg~qsNh~-~AvAaaaa~~Gl~~~ivv~~~ 176 (334)
|+++||-||- ..|.| .++|..|..+|++++++.+..
T Consensus 106 gi~~lvi~Gv-~T~~CV~~Ta~dA~~~Gy~V~Vv~Da~ 142 (200)
T 1x9g_A 106 DVDNAVVFGI-EGHACILQTVADLLDMNKRVFLPKDGL 142 (200)
T ss_dssp TCCEEEEEEE-CTTTHHHHHHHHHHHTTCEEEEEGGGE
T ss_pred CCCEEEEEEE-ecCcHHHHHHHHHHhCCCEEEEeCCCc
Confidence 9999998875 55555 578888999999998887653
No 183
>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*
Probab=25.62 E-value=64 Score=27.93 Aligned_cols=34 Identities=12% Similarity=-0.041 Sum_probs=21.0
Q ss_pred CCEEEEcCCchhHHHHHHHHHHHcCCCCeEEEEEec
Q 019910 294 AIKFVVDAGTGTTAVGLGLGAICLGCVPLFNTLLVK 329 (334)
Q Consensus 294 ~D~Vvvp~GtGgt~aGl~~g~k~lg~~~~VigV~~~ 329 (334)
+...|+.+|.|+-...+. +....+..+|+||+++
T Consensus 24 ~~~~vLDiGCG~G~~~~~--la~~~~~~~v~GvD~s 57 (225)
T 3p2e_A 24 FDRVHIDLGTGDGRNIYK--LAINDQNTFYIGIDPV 57 (225)
T ss_dssp CSEEEEEETCTTSHHHHH--HHHTCTTEEEEEECSC
T ss_pred CCCEEEEEeccCcHHHHH--HHHhCCCCEEEEEeCC
Confidence 456666666554332222 2234688999999997
No 184
>1nba_A N-carbamoylsarcosine amidohydrolase; hydrolase(IN linear amides); 2.00A {Arthrobacter SP} SCOP: c.33.1.3
Probab=25.55 E-value=91 Score=28.15 Aligned_cols=38 Identities=11% Similarity=0.230 Sum_probs=31.3
Q ss_pred HhcCCCEEEEeCCccchHHH-HHHHHHHHhCCeEEEEeCC
Q 019910 137 EDHIVTDLVTCGGCQSAHAT-AVAVSCAERGLKSHLLLRG 175 (334)
Q Consensus 137 ~~~g~~~VVt~Gg~qsNh~~-AvAaaaa~~Gl~~~ivv~~ 175 (334)
++.|+++||-||- ..|.|+ ++|.-|..+|++++++-..
T Consensus 160 r~~gi~~lvI~Gv-~T~~CV~~Ta~dA~~~Gy~V~Vv~DA 198 (264)
T 1nba_A 160 TSNRIDTLIVTGA-TAAGCVRHTVEDAIAKGFRPIIPRET 198 (264)
T ss_dssp HHTTCCEEEEEEE-CTTTHHHHHHHHHHHHTCEEEEEGGG
T ss_pred HhCCCCEEEEEec-CcCCHHHHHHHHHHHCCCEEEEeccc
Confidence 4689999998874 667766 8888899999999888765
No 185
>2a67_A Isochorismatase family protein; structural genomics, PSI, protein structure initiative, MIDW center for structural genomics, MCSG; 2.00A {Enterococcus faecalis}
Probab=25.52 E-value=84 Score=25.94 Aligned_cols=38 Identities=13% Similarity=0.135 Sum_probs=29.3
Q ss_pred HhcCCCEEEEeCCccchHH-HHHHHHHHHhCCeEEEEeCC
Q 019910 137 EDHIVTDLVTCGGCQSAHA-TAVAVSCAERGLKSHLLLRG 175 (334)
Q Consensus 137 ~~~g~~~VVt~Gg~qsNh~-~AvAaaaa~~Gl~~~ivv~~ 175 (334)
++.|+++||-||- ..|.+ .++|..|..+|++++++...
T Consensus 97 ~~~gi~~lvv~G~-~T~~CV~~Ta~da~~~Gy~v~v~~Da 135 (167)
T 2a67_A 97 TEQAVQTLEIAGV-QTEFCVDTTIRMAHGLGYTCLMTPKT 135 (167)
T ss_dssp HHTTCCEEEEEEE-CTTTHHHHHHHHHHHHTCEEEECTTC
T ss_pred HHCCCCEEEEEec-ccChHHHHHHHHHHHCCCEEEEechh
Confidence 4679999998875 56665 47788899999998777554
No 186
>3efb_A Probable SOR-operon regulator; alpha-beta-alpha sandwich, center for structural genomics of infectious diseases, csgid, transcription; HET: MSE; 2.00A {Shigella flexneri 2A} SCOP: c.124.1.8
Probab=25.45 E-value=76 Score=28.52 Aligned_cols=69 Identities=14% Similarity=-0.051 Sum_probs=37.2
Q ss_pred CcEEEEcCCCcchhHH-HHHHHHHHHHHHhhhcCCCCCCEEEEcCCchhHHHHHHHHHHHcCCCCeEEEEEeccC
Q 019910 258 KKVLIVNEGAGDAVAL-LGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGLGAICLGCVPLFNTLLVKLS 331 (334)
Q Consensus 258 ~~~y~IpeGgs~p~a~-~G~~~la~EI~eq~~~g~~~~D~Vvvp~GtGgt~aGl~~g~k~lg~~~~VigV~~~gs 331 (334)
.+.+++|....+.... .-....+.+..++.. .++ -++.+|+|.|+..++..+......-.+.-|.+.|.
T Consensus 27 ~~v~Vvp~~~~~~~~~~~~lg~~aA~~L~~~l----~~~-~vIGv~wG~Tl~~v~~~l~~~~~~~~~~~V~l~Gg 96 (266)
T 3efb_A 27 KDVVVVSGNDEDEETQLAMMGLHGAQLLDRLL----EPG-DIVGFSWGRAVSALVENLPQAGQSRQLICVPIIGG 96 (266)
T ss_dssp SEEEEECCCSCCHHHHHHHHHHHHHHHHHHHC----CTT-CEEEECCSHHHHHHHHTCCCCSSCCCCEEEESBCB
T ss_pred CEEEEEcCCCCChHHHHHHHHHHHHHHHHHhC----CCC-CEEEEcccHHHHHHHHhcCccCCCCCeEEEEcCCC
Confidence 3678888643332221 112223444443331 122 36788999999998876533222224666777765
No 187
>4h17_A Hydrolase, isochorismatase family; rossmann-like fold, structural genomics, joint center for ST genomics, JCSG; 1.60A {Pseudomonas putida KT2440}
Probab=25.31 E-value=89 Score=26.71 Aligned_cols=39 Identities=18% Similarity=0.294 Sum_probs=30.8
Q ss_pred HhcCCCEEEEeCCccchHH-HHHHHHHHHhCCeEEEEeCCC
Q 019910 137 EDHIVTDLVTCGGCQSAHA-TAVAVSCAERGLKSHLLLRGE 176 (334)
Q Consensus 137 ~~~g~~~VVt~Gg~qsNh~-~AvAaaaa~~Gl~~~ivv~~~ 176 (334)
++.|+++||-||- ..|.| .++|..|..+|++++++....
T Consensus 119 ~~~gi~~lvi~G~-~T~~CV~~Ta~da~~~Gy~V~vv~Da~ 158 (197)
T 4h17_A 119 QELGHLDLIVCGF-MSHSSVSTTVRRAKDYGYRCTLVEDAS 158 (197)
T ss_dssp HHHTCSEEEEEEE-CTTTHHHHHHHHHHHTTCEEEEEEEEE
T ss_pred HhcCCCEEEEEee-CcCHHHHHHHHHHHHCCCEEEEeCccc
Confidence 4679999998875 56665 577888999999999887653
No 188
>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1
Probab=25.31 E-value=62 Score=32.03 Aligned_cols=32 Identities=9% Similarity=0.237 Sum_probs=25.4
Q ss_pred EEEEeCCccchHHHHHHHHHHHhCCeEEEEeCCC
Q 019910 143 DLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGE 176 (334)
Q Consensus 143 ~VVt~Gg~qsNh~~AvAaaaa~~Gl~~~ivv~~~ 176 (334)
+||..|+ |-.|.+.|..+++.|++++|+=...
T Consensus 123 DVvVVG~--G~aGl~aA~~la~~G~~V~vlEk~~ 154 (566)
T 1qo8_A 123 QVLVVGA--GSAGFNASLAAKKAGANVILVDKAP 154 (566)
T ss_dssp EEEEECC--SHHHHHHHHHHHHHTCCEEEECSSS
T ss_pred CEEEECC--CHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 4555786 7899999999999999987775443
No 189
>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*
Probab=25.28 E-value=59 Score=30.48 Aligned_cols=32 Identities=25% Similarity=0.310 Sum_probs=24.4
Q ss_pred EEEEeCCccchHHHHHHHHHHHhCC-eEEEEeCCC
Q 019910 143 DLVTCGGCQSAHATAVAVSCAERGL-KSHLLLRGE 176 (334)
Q Consensus 143 ~VVt~Gg~qsNh~~AvAaaaa~~Gl-~~~ivv~~~ 176 (334)
+||..|| |-.|.++|+.+++.|+ +++|+=...
T Consensus 8 dVvIIGg--G~aGlsaA~~La~~G~~~V~vlE~~~ 40 (438)
T 3dje_A 8 SLLIVGA--GTWGTSTALHLARRGYTNVTVLDPYP 40 (438)
T ss_dssp CEEEECC--SHHHHHHHHHHHHTTCCCEEEEESSC
T ss_pred CEEEECC--CHHHHHHHHHHHHcCCCcEEEEeCCC
Confidence 3444776 6799999999999999 777765443
No 190
>3c3k_A Alanine racemase; structural genomics, protein structure initiative, NEW YORK research center for structural genomics, nysgxrc; 1.99A {Actinobacillus succinogenes}
Probab=24.98 E-value=86 Score=27.21 Aligned_cols=35 Identities=9% Similarity=-0.185 Sum_probs=27.0
Q ss_pred CCCCEEEEcCCchhHHHHHHHHHHHcCC----CCeEEEEEe
Q 019910 292 KRAIKFVVDAGTGTTAVGLGLGAICLGC----VPLFNTLLV 328 (334)
Q Consensus 292 ~~~D~Vvvp~GtGgt~aGl~~g~k~lg~----~~~VigV~~ 328 (334)
+.||.||+ .+...+.|+..+++.+|. ++.|+|++-
T Consensus 183 ~~~~ai~~--~~d~~A~g~~~al~~~g~~vP~di~vvg~d~ 221 (285)
T 3c3k_A 183 VKPDAIFA--ISDVLAAGAIQALTESGLSIPQDVAVVGFDG 221 (285)
T ss_dssp SCCSEEEE--SSHHHHHHHHHHHHHTTCCTTTTCEEECSBC
T ss_pred CCCeEEEE--CCHHHHHHHHHHHHHcCCCCCCceEEEEeCC
Confidence 46899886 456788999999999985 456877653
No 191
>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti}
Probab=24.97 E-value=69 Score=30.64 Aligned_cols=32 Identities=16% Similarity=0.275 Sum_probs=24.9
Q ss_pred CCEEEEeCCccchHHHHHHHHHHHhCCeEEEEeCC
Q 019910 141 VTDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRG 175 (334)
Q Consensus 141 ~~~VVt~Gg~qsNh~~AvAaaaa~~Gl~~~ivv~~ 175 (334)
.+.|| .|| |-.|.++|..+++.|++++++=+.
T Consensus 28 ~dViI-IGg--G~AGl~aA~~La~~G~~V~llEk~ 59 (417)
T 3v76_A 28 QDVVI-IGA--GAAGMMCAIEAGKRGRRVLVIDHA 59 (417)
T ss_dssp CCEEE-ECC--SHHHHHHHHHHHHTTCCEEEECSS
T ss_pred CCEEE-ECc--CHHHHHHHHHHHHCCCcEEEEeCC
Confidence 45555 676 679999999999999998877443
No 192
>4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis}
Probab=24.96 E-value=60 Score=30.96 Aligned_cols=29 Identities=21% Similarity=0.211 Sum_probs=23.7
Q ss_pred EEEEeCCccchHHHHHHHHHHHhCCeEEEEe
Q 019910 143 DLVTCGGCQSAHATAVAVSCAERGLKSHLLL 173 (334)
Q Consensus 143 ~VVt~Gg~qsNh~~AvAaaaa~~Gl~~~ivv 173 (334)
+||..|| |-.|.+.|+..++.|.+++|+=
T Consensus 3 ~VvVIGa--G~~GL~aA~~La~~G~~V~VlE 31 (501)
T 4dgk_A 3 PTTVIGA--GFGGLALAIRLQAAGIPVLLLE 31 (501)
T ss_dssp CEEEECC--HHHHHHHHHHHHHTTCCEEEEC
T ss_pred CEEEECC--cHHHHHHHHHHHHCCCcEEEEc
Confidence 4555786 7789999999999999988773
No 193
>3iup_A Putative NADPH:quinone oxidoreductase; YP_296108.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE NDP; 1.70A {Ralstonia eutropha}
Probab=24.90 E-value=1.5e+02 Score=27.50 Aligned_cols=59 Identities=14% Similarity=0.125 Sum_probs=37.8
Q ss_pred hhHHHHhcCCCEEEEeCCccchHHHHHHHHHHHhCCeEEEEeCCCCCccccchhHHHHHCC-eEEEE
Q 019910 132 LLPLLEDHIVTDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGEQPQILTGYNLISTIYG-KVTYV 197 (334)
Q Consensus 132 lL~~a~~~g~~~VVt~Gg~qsNh~~AvAaaaa~~Gl~~~ivv~~~~p~~~~gn~~~~~~~G-~V~~v 197 (334)
++..+...|.+.+| .|++.|.-+.+.+..|+.+|.+.+++.+.+. +....+.+| +.+..
T Consensus 163 ~~~~~~~~g~~vlV-~gag~G~vG~~a~q~a~~~Ga~Vi~~~~~~~------~~~~~~~lGa~~~~~ 222 (379)
T 3iup_A 163 MVETMRLEGHSALV-HTAAASNLGQMLNQICLKDGIKLVNIVRKQE------QADLLKAQGAVHVCN 222 (379)
T ss_dssp HHHHHHHTTCSCEE-ESSTTSHHHHHHHHHHHHHTCCEEEEESSHH------HHHHHHHTTCSCEEE
T ss_pred HHHHhccCCCEEEE-ECCCCCHHHHHHHHHHHHCCCEEEEEECCHH------HHHHHHhCCCcEEEe
Confidence 34444566767677 4322478899999999999998666654311 334566788 54443
No 194
>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ...
Probab=24.86 E-value=58 Score=29.97 Aligned_cols=30 Identities=13% Similarity=0.216 Sum_probs=23.8
Q ss_pred EEEeCCccchHHHHHHHHHHHhCCeEEEEeCC
Q 019910 144 LVTCGGCQSAHATAVAVSCAERGLKSHLLLRG 175 (334)
Q Consensus 144 VVt~Gg~qsNh~~AvAaaaa~~Gl~~~ivv~~ 175 (334)
|+-.|| |=.|.++|.+.++.|++++|+=+.
T Consensus 5 V~IvGa--G~aGl~~A~~L~~~G~~v~v~E~~ 34 (394)
T 1k0i_A 5 VAIIGA--GPSGLLLGQLLHKAGIDNVILERQ 34 (394)
T ss_dssp EEEECC--SHHHHHHHHHHHHHTCCEEEECSS
T ss_pred EEEECC--CHHHHHHHHHHHHCCCCEEEEeCC
Confidence 444676 668999999999999998888544
No 195
>3h5l_A Putative branched-chain amino acid ABC transporter; structural genomics, PSI-2, protein structure initiative; 1.70A {Ruegeria pomeroyi}
Probab=24.69 E-value=4e+02 Score=24.26 Aligned_cols=35 Identities=9% Similarity=-0.218 Sum_probs=26.8
Q ss_pred CCCEEEEcCCchhHHHHHHHHHHHcCCCCeEEEEE
Q 019910 293 RAIKFVVDAGTGTTAVGLGLGAICLGCVPLFNTLL 327 (334)
Q Consensus 293 ~~D~Vvvp~GtGgt~aGl~~g~k~lg~~~~VigV~ 327 (334)
.+|.||++.-.+..+..+...++..|.+..+++..
T Consensus 219 ~~d~v~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 253 (419)
T 3h5l_A 219 PPAVIVVTHFYPQDQALFMNQFMTDPTNSLVYLQY 253 (419)
T ss_dssp CCSEEEECCCCHHHHHHHHHHHTTSCCSCEEEECS
T ss_pred CCCEEEEccccCchHHHHHHHHHHcCCCceEEecC
Confidence 47888887655667888889999988877776643
No 196
>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53
Probab=24.67 E-value=54 Score=27.86 Aligned_cols=30 Identities=13% Similarity=0.051 Sum_probs=18.2
Q ss_pred EEEcCCchhHHHHHHHHHHHcCCCCeEEEEEecc
Q 019910 297 FVVDAGTGTTAVGLGLGAICLGCVPLFNTLLVKL 330 (334)
Q Consensus 297 Vvvp~GtGgt~aGl~~g~k~lg~~~~VigV~~~g 330 (334)
+=+.||+|..+.-++ ...+..+|+||+++.
T Consensus 43 LDiGcG~G~~~~~la----~~~p~~~v~giD~s~ 72 (213)
T 2fca_A 43 IEVGTGKGQFISGMA----KQNPDINYIGIELFK 72 (213)
T ss_dssp EEECCTTSHHHHHHH----HHCTTSEEEEECSCH
T ss_pred EEEecCCCHHHHHHH----HHCCCCCEEEEEech
Confidence 334455555444333 335789999999864
No 197
>4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A
Probab=24.60 E-value=3.4e+02 Score=23.41 Aligned_cols=34 Identities=24% Similarity=0.261 Sum_probs=25.8
Q ss_pred CCCEEEEeCCccchHHHHHHHHHHHhCCeEEEEeCC
Q 019910 140 IVTDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRG 175 (334)
Q Consensus 140 g~~~VVt~Gg~qsNh~~AvAaaaa~~Gl~~~ivv~~ 175 (334)
|.+.|| +|+ .|--|.++|...++.|.+++++.+.
T Consensus 29 ~k~vlI-TGa-s~gIG~~la~~l~~~G~~V~~~~r~ 62 (271)
T 4iin_A 29 GKNVLI-TGA-SKGIGAEIAKTLASMGLKVWINYRS 62 (271)
T ss_dssp CCEEEE-TTC-SSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred CCEEEE-ECC-CcHHHHHHHHHHHHCCCEEEEEeCC
Confidence 334445 565 5789999999999999998887764
No 198
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=24.59 E-value=3.3e+02 Score=23.30 Aligned_cols=35 Identities=17% Similarity=0.085 Sum_probs=28.0
Q ss_pred CCCCEEEEcCCchhHHHHHHHHHHHcCC----CCeEEEEEe
Q 019910 292 KRAIKFVVDAGTGTTAVGLGLGAICLGC----VPLFNTLLV 328 (334)
Q Consensus 292 ~~~D~Vvvp~GtGgt~aGl~~g~k~lg~----~~~VigV~~ 328 (334)
+.||.||+ .+...+.|+..+++.+|. ++.|+|++-
T Consensus 187 ~~~~ai~~--~~d~~A~g~~~al~~~g~~vP~di~vig~d~ 225 (288)
T 3gv0_A 187 DRPDGIVS--ISGSSTIALVAGFEAAGVKIGEDVDIVSKQS 225 (288)
T ss_dssp SCCSEEEE--SCHHHHHHHHHHHHTTTCCTTTSCEEEEEES
T ss_pred CCCcEEEE--cCcHHHHHHHHHHHHcCCCCCCceEEEEecC
Confidence 46899886 456788999999999984 578888873
No 199
>3tpf_A Otcase, ornithine carbamoyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, rossman fold; 2.70A {Campylobacter jejuni subsp}
Probab=24.58 E-value=1.8e+02 Score=27.09 Aligned_cols=62 Identities=13% Similarity=0.195 Sum_probs=40.6
Q ss_pred EEEEeCCCCCCCChhHHHHHHHhhhHHHHhcC-C---CEEEEeCCccchHHHHHHHHHHHhCCeEEEEeCCCC
Q 019910 109 FYVVRDDLLHPLVNGNKARKMDALLPLLEDHI-V---TDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGEQ 177 (334)
Q Consensus 109 lyvKrDDl~~p~~gGnK~RkL~~lL~~a~~~g-~---~~VVt~Gg~qsNh~~AvAaaaa~~Gl~~~ivv~~~~ 177 (334)
|.==.+|..||+ -.|.-++.--+..| . .+|.-+|- .+|-+++++.+++++|++.+++.|+..
T Consensus 116 VINag~~~~HPt------QaLaDl~Ti~e~~g~l~~gl~va~vGD-~~~va~Sl~~~~~~~G~~v~~~~P~~~ 181 (307)
T 3tpf_A 116 VINALSELYHPT------QVLGDLFTIKEWNKMQNGIAKVAFIGD-SNNMCNSWLITAAILGFEISIAMPKNY 181 (307)
T ss_dssp EEEEECSSCCHH------HHHHHHHHHHHTTCCGGGCCEEEEESC-SSHHHHHHHHHHHHHTCEEEEECCTTC
T ss_pred EEeCCCCCcCcH------HHHHHHHHHHHHhCCCCCCCEEEEEcC-CCccHHHHHHHHHHcCCEEEEECCCcc
Confidence 333346677883 22333333223333 1 24555776 589999999999999999999999854
No 200
>3s2u_A UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape pyrophosphoryl-undecaprenol N-acetylglucosamine...; N-acetylglucosaminyl transferase; HET: UD1; 2.23A {Pseudomonas aeruginosa}
Probab=24.39 E-value=4.1e+02 Score=24.25 Aligned_cols=50 Identities=26% Similarity=0.312 Sum_probs=30.7
Q ss_pred EEEEeCCccchH---HHHHHHHHHHhCCeEEEEeCCCCCccccchhHHHHHCC-eEEEEC
Q 019910 143 DLVTCGGCQSAH---ATAVAVSCAERGLKSHLLLRGEQPQILTGYNLISTIYG-KVTYVP 198 (334)
Q Consensus 143 ~VVt~Gg~qsNh---~~AvAaaaa~~Gl~~~ivv~~~~p~~~~gn~~~~~~~G-~V~~v~ 198 (334)
-|++.|| +|=| +.|+|-.-++.|.+++++....-.+ ..+....| +++.++
T Consensus 5 i~i~~GG-TgGHi~palala~~L~~~g~~V~~vg~~~g~e-----~~~v~~~g~~~~~i~ 58 (365)
T 3s2u_A 5 VLIMAGG-TGGHVFPALACAREFQARGYAVHWLGTPRGIE-----NDLVPKAGLPLHLIQ 58 (365)
T ss_dssp EEEECCS-SHHHHHHHHHHHHHHHHTTCEEEEEECSSSTH-----HHHTGGGTCCEEECC
T ss_pred EEEEcCC-CHHHHHHHHHHHHHHHhCCCEEEEEECCchHh-----hchhhhcCCcEEEEE
Confidence 3555555 5657 7888888889999988776432211 11233456 666655
No 201
>3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium}
Probab=24.37 E-value=3.7e+02 Score=23.72 Aligned_cols=34 Identities=12% Similarity=0.101 Sum_probs=25.8
Q ss_pred CCCEEEEeCCccchHHHHHHHHHHHhCCeEEEEeCC
Q 019910 140 IVTDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRG 175 (334)
Q Consensus 140 g~~~VVt~Gg~qsNh~~AvAaaaa~~Gl~~~ivv~~ 175 (334)
|...|| +|+ .+--|.++|..-++.|.+++++-+.
T Consensus 28 gk~~lV-TGa-s~GIG~aia~~la~~G~~V~~~~~~ 61 (299)
T 3t7c_A 28 GKVAFI-TGA-ARGQGRSHAITLAREGADIIAIDVC 61 (299)
T ss_dssp TCEEEE-EST-TSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred CCEEEE-ECC-CCHHHHHHHHHHHHCCCEEEEEecc
Confidence 444555 455 4778999999999999998887655
No 202
>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}
Probab=24.31 E-value=99 Score=25.27 Aligned_cols=36 Identities=11% Similarity=-0.115 Sum_probs=19.8
Q ss_pred CCEEEEcCCchhHHHHHHHHHHHcCC-CCeEEEEEecc
Q 019910 294 AIKFVVDAGTGTTAVGLGLGAICLGC-VPLFNTLLVKL 330 (334)
Q Consensus 294 ~D~Vvvp~GtGgt~aGl~~g~k~lg~-~~~VigV~~~g 330 (334)
+...|+..|+|+-...+..+ +..++ ..+|+||+++.
T Consensus 22 ~~~~vLDlGcG~G~~~~~l~-~~~~~~~~~v~gvD~s~ 58 (201)
T 2plw_A 22 KNKIILDIGCYPGSWCQVIL-ERTKNYKNKIIGIDKKI 58 (201)
T ss_dssp TTEEEEEESCTTCHHHHHHH-HHTTTSCEEEEEEESSC
T ss_pred CCCEEEEeCCCCCHHHHHHH-HHcCCCCceEEEEeCCc
Confidence 45556665555433333322 22232 68999999864
No 203
>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}
Probab=24.17 E-value=62 Score=29.48 Aligned_cols=32 Identities=22% Similarity=0.302 Sum_probs=24.4
Q ss_pred CCEEEEeCCccchHHHHHHHHHHHhCCeEEEEeCC
Q 019910 141 VTDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRG 175 (334)
Q Consensus 141 ~~~VVt~Gg~qsNh~~AvAaaaa~~Gl~~~ivv~~ 175 (334)
.+.|| .|| |=.|.++|+..++.|++++++=+.
T Consensus 6 ~dVvI-IGg--Gi~Gl~~A~~La~~G~~V~lle~~ 37 (382)
T 1y56_B 6 SEIVV-IGG--GIVGVTIAHELAKRGEEVTVIEKR 37 (382)
T ss_dssp CSEEE-ECC--SHHHHHHHHHHHHTTCCEEEECSS
T ss_pred CCEEE-ECC--CHHHHHHHHHHHHCCCeEEEEeCC
Confidence 34444 676 679999999999999997666444
No 204
>2iks_A DNA-binding transcriptional dual regulator; escherichia coli structural genomics, PSI-2, protein structure initiative; 1.85A {Escherichia coli}
Probab=24.11 E-value=3.4e+02 Score=23.25 Aligned_cols=35 Identities=6% Similarity=-0.217 Sum_probs=27.4
Q ss_pred CCCCEEEEcCCchhHHHHHHHHHHHcCC----CCeEEEEEe
Q 019910 292 KRAIKFVVDAGTGTTAVGLGLGAICLGC----VPLFNTLLV 328 (334)
Q Consensus 292 ~~~D~Vvvp~GtGgt~aGl~~g~k~lg~----~~~VigV~~ 328 (334)
+.||.||+. +..++.|+..+++.+|. ++.|+|++-
T Consensus 196 ~~~~ai~~~--~d~~a~g~~~al~~~g~~vP~di~vvg~d~ 234 (293)
T 2iks_A 196 PMPQALFTT--SFALLQGVMDVTLRRDGKLPSDLAIATFGD 234 (293)
T ss_dssp CCCSEEEES--SHHHHHHHHHHHHHHHSSCCSSCEEEEESC
T ss_pred CCCCEEEEC--ChHHHHHHHHHHHHcCCCCCCceEEEEECC
Confidence 468998874 56789999999999884 467888864
No 205
>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A*
Probab=24.07 E-value=72 Score=29.56 Aligned_cols=33 Identities=15% Similarity=0.285 Sum_probs=26.5
Q ss_pred CEEEEeCCccchHHHHHHHHHHHhCCeEEEEeCCC
Q 019910 142 TDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGE 176 (334)
Q Consensus 142 ~~VVt~Gg~qsNh~~AvAaaaa~~Gl~~~ivv~~~ 176 (334)
.+|+..|| |=.|.++|...++.|++++||=+..
T Consensus 27 ~dV~IVGa--G~aGl~~A~~L~~~G~~v~v~E~~~ 59 (398)
T 2xdo_A 27 KNVAIIGG--GPVGLTMAKLLQQNGIDVSVYERDN 59 (398)
T ss_dssp CEEEEECC--SHHHHHHHHHHHTTTCEEEEEECSS
T ss_pred CCEEEECC--CHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 35665776 6799999999999999998886553
No 206
>4f2g_A Otcase 1, ornithine carbamoyltransferase 1; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis}
Probab=24.02 E-value=1.4e+02 Score=27.88 Aligned_cols=35 Identities=9% Similarity=-0.057 Sum_probs=29.3
Q ss_pred CEEEEeCCccchHHHHHHHHHHHhCCeEEEEeCCCC
Q 019910 142 TDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGEQ 177 (334)
Q Consensus 142 ~~VVt~Gg~qsNh~~AvAaaaa~~Gl~~~ivv~~~~ 177 (334)
.+|.-+|-. +|-+++++.+++++|++.+++.|+..
T Consensus 155 lkva~vGD~-~~va~Sl~~~~~~~G~~v~~~~P~~~ 189 (309)
T 4f2g_A 155 KTVAWVGDA-NNMLYTWIQAARILDFKLQLSTPPGY 189 (309)
T ss_dssp CEEEEESCC-CHHHHHHHHHHHHHTCEEEEECCGGG
T ss_pred CEEEEECCC-cchHHHHHHHHHHcCCEEEEECCccc
Confidence 356667764 89999999999999999999998743
No 207
>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2
Probab=23.98 E-value=77 Score=29.36 Aligned_cols=32 Identities=19% Similarity=0.336 Sum_probs=25.5
Q ss_pred CEEEEeCCccchHHHHHHHHHHHhCCeEEEEeCC
Q 019910 142 TDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRG 175 (334)
Q Consensus 142 ~~VVt~Gg~qsNh~~AvAaaaa~~Gl~~~ivv~~ 175 (334)
.+|+-.|| |=.|.++|...++.|++++|+=+.
T Consensus 6 ~~V~IVGa--G~aGl~~A~~L~~~G~~v~v~E~~ 37 (397)
T 2vou_A 6 DRIAVVGG--SISGLTAALMLRDAGVDVDVYERS 37 (397)
T ss_dssp SEEEEECC--SHHHHHHHHHHHHTTCEEEEECSS
T ss_pred CcEEEECC--CHHHHHHHHHHHhCCCCEEEEecC
Confidence 34555776 668999999999999998888554
No 208
>2okg_A Central glycolytic gene regulator; alpha/beta/alpha sandwich, rossmann-like fold, structural genomics, PSI-2, protein structure initiative; HET: MSE G3H; 1.65A {Bacillus subtilis} SCOP: c.124.1.8 PDB: 3bxe_A* 3bxf_A* 3bxg_A* 3bxh_A*
Probab=23.63 E-value=1.8e+02 Score=25.77 Aligned_cols=66 Identities=14% Similarity=0.033 Sum_probs=38.0
Q ss_pred CcEEEEcCCCcch---hHHHHHHHHHHHHHHhhhcCCCCCCEEEEcCCchhHHHHHHHHHHHcCCCCeEEEEEecc
Q 019910 258 KKVLIVNEGAGDA---VALLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGLGAICLGCVPLFNTLLVKL 330 (334)
Q Consensus 258 ~~~y~IpeGgs~p---~a~~G~~~la~EI~eq~~~g~~~~D~Vvvp~GtGgt~aGl~~g~k~lg~~~~VigV~~~g 330 (334)
.+.+++|....+. ...+|- ..|..|.+.+ . +.-++.+++|+|..+++..+...-....+.-|.+.|
T Consensus 23 ~~viVv~~~~~~~~~~~~~l~~-~aA~~l~~~l-----~-~~~viGla~G~T~~~~~~~l~~~~~~~~v~~v~L~g 91 (255)
T 2okg_A 23 KDAIIVSGDSDQSPWVKKEMGR-AAVACMKKRF-----S-GKNIVAVTGGTTIEAVAEMMTPDSKNRELLFVPARG 91 (255)
T ss_dssp SEEEEESSCTTTCTHHHHHHHH-HHHHHHHHHC-----C-SEEEEEECCSHHHHHHHHHCCCCTTCCEEEEEESEE
T ss_pred CeEEEECCCCCchhHHHHHHHH-HHHHHHHHhC-----C-CCCEEEECCcHHHHHHHHhhccccCCCCCEEEECCC
Confidence 3677787543332 122332 2333444444 1 345788999999999998875432334666666654
No 209
>1t57_A Conserved protein MTH1675; structural genomics, FMN; HET: FMN; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.49.1.2
Probab=23.61 E-value=1.3e+02 Score=26.75 Aligned_cols=54 Identities=20% Similarity=0.192 Sum_probs=35.5
Q ss_pred EEEcCCCcchhHHHHHHHHHHHHHHhhhcCCCCCCEEEEcCCchhHHHHHHHHHHHcCCCCeEEEEE
Q 019910 261 LIVNEGAGDAVALLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGLGAICLGCVPLFNTLL 327 (334)
Q Consensus 261 y~IpeGgs~p~a~~G~~~la~EI~eq~~~g~~~~D~Vvvp~GtGgt~aGl~~g~k~lg~~~~VigV~ 327 (334)
|+-..|-.|-.. ...++.|-++++ + .++|||++-+|.|+.-+...+ .. +++.|.
T Consensus 27 YF~~~G~eNT~~---tl~la~era~e~--~---Ik~iVVASssG~TA~k~~e~~----~~-~lVvVT 80 (206)
T 1t57_A 27 YFEEPGKENTER---VLELVGERADQL--G---IRNFVVASVSGETALRLSEMV----EG-NIVSVT 80 (206)
T ss_dssp EESSCSGGGHHH---HHHHHHHHHHHH--T---CCEEEEECSSSHHHHHHHTTC----CS-EEEEEC
T ss_pred EecCCCcccHHH---HHHHHHHHHHHc--C---CCEEEEEeCCCHHHHHHHHHc----cC-CEEEEe
Confidence 444444444333 455777777665 3 679999999999996666533 23 888775
No 210
>3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile}
Probab=23.39 E-value=3.8e+02 Score=23.47 Aligned_cols=36 Identities=22% Similarity=0.290 Sum_probs=26.7
Q ss_pred CCCEEEEeCCccchHHHHHHHHHHHhCCeEEEEeCCCC
Q 019910 140 IVTDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGEQ 177 (334)
Q Consensus 140 g~~~VVt~Gg~qsNh~~AvAaaaa~~Gl~~~ivv~~~~ 177 (334)
+...|| +|+ .+--|.++|..-++.|.+++++-+...
T Consensus 9 ~k~vlV-TGa-s~GIG~aia~~l~~~G~~V~~~~r~~~ 44 (285)
T 3sc4_A 9 GKTMFI-SGG-SRGIGLAIAKRVAADGANVALVAKSAE 44 (285)
T ss_dssp TCEEEE-ESC-SSHHHHHHHHHHHTTTCEEEEEESCCS
T ss_pred CCEEEE-ECC-CCHHHHHHHHHHHHCCCEEEEEECChh
Confidence 334455 455 477899999999999999888777643
No 211
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}
Probab=23.35 E-value=2.3e+02 Score=21.74 Aligned_cols=31 Identities=13% Similarity=0.191 Sum_probs=24.8
Q ss_pred EEEEeCCccchHHHHHHHHHHHhCCeEEEEeCC
Q 019910 143 DLVTCGGCQSAHATAVAVSCAERGLKSHLLLRG 175 (334)
Q Consensus 143 ~VVt~Gg~qsNh~~AvAaaaa~~Gl~~~ivv~~ 175 (334)
+|+.+|+ |..|.++|...++.|.+++++-+.
T Consensus 8 ~v~I~G~--G~iG~~la~~L~~~g~~V~~id~~ 38 (141)
T 3llv_A 8 EYIVIGS--EAAGVGLVRELTAAGKKVLAVDKS 38 (141)
T ss_dssp SEEEECC--SHHHHHHHHHHHHTTCCEEEEESC
T ss_pred EEEEECC--CHHHHHHHHHHHHCCCeEEEEECC
Confidence 4555775 789999999999999998887543
No 212
>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}
Probab=23.26 E-value=1.1e+02 Score=24.27 Aligned_cols=35 Identities=9% Similarity=0.022 Sum_probs=18.8
Q ss_pred CCEEEEcCCchhHHHHHHHHHHHcCCCCeEEEEEecc
Q 019910 294 AIKFVVDAGTGTTAVGLGLGAICLGCVPLFNTLLVKL 330 (334)
Q Consensus 294 ~D~Vvvp~GtGgt~aGl~~g~k~lg~~~~VigV~~~g 330 (334)
+...|+.+|+|+-.. ...+....+..+|+||+++.
T Consensus 25 ~~~~vldiG~G~G~~--~~~l~~~~~~~~v~~vD~~~ 59 (178)
T 3hm2_A 25 PHETLWDIGGGSGSI--AIEWLRSTPQTTAVCFEISE 59 (178)
T ss_dssp TTEEEEEESTTTTHH--HHHHHTTSSSEEEEEECSCH
T ss_pred CCCeEEEeCCCCCHH--HHHHHHHCCCCeEEEEeCCH
Confidence 444455555544222 22223334678999999853
No 213
>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida}
Probab=23.25 E-value=81 Score=29.88 Aligned_cols=32 Identities=3% Similarity=0.078 Sum_probs=26.5
Q ss_pred EEEEeCCccchHHHHHHHHHHHhCCeEEEEeCCC
Q 019910 143 DLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGE 176 (334)
Q Consensus 143 ~VVt~Gg~qsNh~~AvAaaaa~~Gl~~~ivv~~~ 176 (334)
+|+..|| |=.|.++|...++.|++++|+=+..
T Consensus 24 ~ViIVGa--GpaGl~~A~~La~~G~~V~viE~~~ 55 (430)
T 3ihm_A 24 RIGIVGA--GTAGLHLGLFLRQHDVDVTVYTDRK 55 (430)
T ss_dssp EEEEECC--HHHHHHHHHHHHHTTCEEEEEESCC
T ss_pred CEEEECC--cHHHHHHHHHHHHCCCeEEEEcCCC
Confidence 4555777 6699999999999999999997664
No 214
>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}
Probab=23.16 E-value=86 Score=27.01 Aligned_cols=31 Identities=23% Similarity=0.278 Sum_probs=24.8
Q ss_pred EEEEeCCccchHHHHHHHHHHHhCCeEEEEeCC
Q 019910 143 DLVTCGGCQSAHATAVAVSCAERGLKSHLLLRG 175 (334)
Q Consensus 143 ~VVt~Gg~qsNh~~AvAaaaa~~Gl~~~ivv~~ 175 (334)
+|+-.|| |-.|.++|...++.|++++++=+.
T Consensus 4 ~vvIIG~--G~aGl~aA~~l~~~g~~v~lie~~ 34 (297)
T 3fbs_A 4 DVIIIGG--SYAGLSAALQLGRARKNILLVDAG 34 (297)
T ss_dssp EEEEECC--SHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CEEEECC--CHHHHHHHHHHHhCCCCEEEEeCC
Confidence 3555776 678999999999999998888643
No 215
>3kl2_A Putative isochorismatase; structural genomics, unknown function, PSI-2, protein struct initiative; 2.30A {Streptomyces avermitilis} SCOP: c.33.1.0
Probab=23.13 E-value=1e+02 Score=26.93 Aligned_cols=51 Identities=18% Similarity=0.183 Sum_probs=36.2
Q ss_pred ChhHHHHHHHhhhHHHHhcCCCEEEEeCCccchHH-HHHHHHHHHhCCeEEEEeCC
Q 019910 121 VNGNKARKMDALLPLLEDHIVTDLVTCGGCQSAHA-TAVAVSCAERGLKSHLLLRG 175 (334)
Q Consensus 121 ~gGnK~RkL~~lL~~a~~~g~~~VVt~Gg~qsNh~-~AvAaaaa~~Gl~~~ivv~~ 175 (334)
.++|--=.|...| ++.|+++||-||- ..|.| .++|.-|..+|++++++-..
T Consensus 134 ~SaF~~t~L~~~L---~~~gi~~lii~G~-~T~~CV~~Ta~da~~~Gy~v~vv~Da 185 (226)
T 3kl2_A 134 LDTFASTNLDFIL---RSKGVDTIVLGGF-LTNCCVESTMRTGYERGFRVITLTDC 185 (226)
T ss_dssp SSHHHHSSHHHHH---HHHTCCEEEEEEE-CTTTHHHHHHHHHHHTTCEEEEEEEE
T ss_pred cCCccCchHHHHH---hCCCCCcEEEecc-CcchHHHHHHHHHHHCCCEEEEechh
Confidence 3555433454444 4679999998875 55655 57788899999999988765
No 216
>4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A*
Probab=23.09 E-value=3.7e+02 Score=23.32 Aligned_cols=34 Identities=24% Similarity=0.213 Sum_probs=25.6
Q ss_pred CCCEEEEeCCccchHHHHHHHHHHHhCCeEEEEeCC
Q 019910 140 IVTDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRG 175 (334)
Q Consensus 140 g~~~VVt~Gg~qsNh~~AvAaaaa~~Gl~~~ivv~~ 175 (334)
+...|| +|+ .|--|.++|...++.|.+.++..+.
T Consensus 28 ~k~vlV-TGa-s~gIG~aia~~la~~G~~V~~~~~~ 61 (269)
T 4dmm_A 28 DRIALV-TGA-SRGIGRAIALELAAAGAKVAVNYAS 61 (269)
T ss_dssp TCEEEE-TTC-SSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred CCEEEE-ECC-CCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 444455 565 4788999999999999998877664
No 217
>4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A*
Probab=22.99 E-value=65 Score=33.28 Aligned_cols=34 Identities=15% Similarity=-0.033 Sum_probs=27.0
Q ss_pred EEEEcCCchhHHHHHHHHHHHcCCCCeEEEEEec
Q 019910 296 KFVVDAGTGTTAVGLGLGAICLGCVPLFNTLLVK 329 (334)
Q Consensus 296 ~Vvvp~GtGgt~aGl~~g~k~lg~~~~VigV~~~ 329 (334)
.++|.+|+|-+..-.+.+.+..+.+++|+||+.+
T Consensus 361 VldVGaGrGpLv~~al~A~a~~~~~vkVyAVEkn 394 (637)
T 4gqb_A 361 LMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKN 394 (637)
T ss_dssp EEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESC
T ss_pred EEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECC
Confidence 3456777887777778888888889999999864
No 218
>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*
Probab=22.90 E-value=91 Score=28.68 Aligned_cols=46 Identities=9% Similarity=-0.052 Sum_probs=25.7
Q ss_pred HHHHHHHhhhcCCCCCCEEEEcCCchhHHHHHHHHHHHcCCCCeEEEEEec
Q 019910 279 LLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGLGAICLGCVPLFNTLLVK 329 (334)
Q Consensus 279 la~EI~eq~~~g~~~~D~Vvvp~GtGgt~aGl~~g~k~lg~~~~VigV~~~ 329 (334)
+..|+.+.+. ..++..|+.+|.|+-...+ .+....+..+|+||+.+
T Consensus 14 Ll~e~l~~L~---~~~g~~vLD~g~G~G~~s~--~la~~~~~~~VigvD~d 59 (301)
T 1m6y_A 14 MVREVIEFLK---PEDEKIILDCTVGEGGHSR--AILEHCPGCRIIGIDVD 59 (301)
T ss_dssp THHHHHHHHC---CCTTCEEEETTCTTSHHHH--HHHHHCTTCEEEEEESC
T ss_pred HHHHHHHhcC---CCCCCEEEEEeCCcCHHHH--HHHHHCCCCEEEEEECC
Confidence 5567766652 1345566665555322222 22233347899999975
No 219
>3grf_A Ornithine carbamoyltransferase; ornithine transcarbamoylase, arginine degradation pathway, giardia lamblia, drug target; 2.00A {Giardia intestinalis}
Probab=22.85 E-value=1.2e+02 Score=28.45 Aligned_cols=35 Identities=17% Similarity=0.382 Sum_probs=28.6
Q ss_pred EEEEeCCccchHHHHHHHHHHHhCCeEEEEeCCCC
Q 019910 143 DLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGEQ 177 (334)
Q Consensus 143 ~VVt~Gg~qsNh~~AvAaaaa~~Gl~~~ivv~~~~ 177 (334)
+|.-+|-...|-+++++.+++++|++++++.|+..
T Consensus 163 ~va~vGD~~~~va~Sl~~~~~~~G~~v~~~~P~~~ 197 (328)
T 3grf_A 163 KFAYCGDSMNNVTYDLMRGCALLGMECHVCCPDHK 197 (328)
T ss_dssp CEEEESCCSSHHHHHHHHHHHHHTCEEEEECCSSG
T ss_pred EEEEeCCCCcchHHHHHHHHHHcCCEEEEECChHh
Confidence 35557765468999999999999999999998754
No 220
>4eyg_A Twin-arginine translocation pathway signal; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: VNL; 1.86A {Rhodopseudomonas palustris} PDB: 4ey3_A* 3t0n_A* 4eyk_A*
Probab=22.84 E-value=3.9e+02 Score=23.51 Aligned_cols=34 Identities=12% Similarity=0.055 Sum_probs=25.7
Q ss_pred hcCCCEEEEeCCccchHHHHHHHHHHHhCCeEEEEe
Q 019910 138 DHIVTDLVTCGGCQSAHATAVAVSCAERGLKSHLLL 173 (334)
Q Consensus 138 ~~g~~~VVt~Gg~qsNh~~AvAaaaa~~Gl~~~ivv 173 (334)
+.++..||.. ..+....+++-.+.+.+++.+.+.
T Consensus 70 ~~~v~~iiG~--~~s~~~~~~~~~~~~~~ip~i~~~ 103 (368)
T 4eyg_A 70 NDKVNVIAGF--GITPAALAAAPLATQAKVPEIVMA 103 (368)
T ss_dssp TSCCSEEEEC--SSHHHHHHHHHHHHHHTCCEEESS
T ss_pred cCCcEEEECC--CccHHHHHHHHHHHhCCceEEecc
Confidence 4788888843 346677888899999999987654
No 221
>3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1}
Probab=22.82 E-value=3.7e+02 Score=23.19 Aligned_cols=34 Identities=15% Similarity=0.083 Sum_probs=24.9
Q ss_pred CCCEEEEeCCccchHHHHHHHHHHHhCCeEEEEeCC
Q 019910 140 IVTDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRG 175 (334)
Q Consensus 140 g~~~VVt~Gg~qsNh~~AvAaaaa~~Gl~~~ivv~~ 175 (334)
+...|| +|+ .+--|.++|...++.|.+++++.+.
T Consensus 11 ~k~vlV-TGa-s~GIG~aia~~la~~G~~V~~~~r~ 44 (262)
T 3ksu_A 11 NKVIVI-AGG-IKNLGALTAKTFALESVNLVLHYHQ 44 (262)
T ss_dssp TCEEEE-ETC-SSHHHHHHHHHHTTSSCEEEEEESC
T ss_pred CCEEEE-ECC-CchHHHHHHHHHHHCCCEEEEEecC
Confidence 334455 455 4678999999999999988877654
No 222
>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*
Probab=22.82 E-value=2.8e+02 Score=24.82 Aligned_cols=33 Identities=18% Similarity=0.170 Sum_probs=27.1
Q ss_pred CEEEEeCCccchHHHHHHHHHHHhCCeEEEEeCCC
Q 019910 142 TDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGE 176 (334)
Q Consensus 142 ~~VVt~Gg~qsNh~~AvAaaaa~~Gl~~~ivv~~~ 176 (334)
+-+| +|+ +|.-|.+++....+.|.+.+++.+..
T Consensus 12 ~IlV-tGa-tG~iG~~l~~~L~~~g~~V~~l~R~~ 44 (346)
T 3i6i_A 12 RVLI-AGA-TGFIGQFVATASLDAHRPTYILARPG 44 (346)
T ss_dssp CEEE-ECT-TSHHHHHHHHHHHHTTCCEEEEECSS
T ss_pred eEEE-ECC-CcHHHHHHHHHHHHCCCCEEEEECCC
Confidence 3445 565 69999999999999999999999874
No 223
>2w37_A Ornithine carbamoyltransferase, catabolic; transcarbamylase, metal binding-site, hexamer, cytoplasm, arginine metabolism; 2.10A {Lactobacillus hilgardii}
Probab=22.73 E-value=1.7e+02 Score=28.02 Aligned_cols=36 Identities=19% Similarity=0.211 Sum_probs=30.0
Q ss_pred CEEEEeCCccchHHHHHHHHHHHhCCeEEEEeCCCC
Q 019910 142 TDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGEQ 177 (334)
Q Consensus 142 ~~VVt~Gg~qsNh~~AvAaaaa~~Gl~~~ivv~~~~ 177 (334)
.+|+.+|-..+|-+++++.+|+++|++.+++.|...
T Consensus 177 l~va~vGD~~~rva~Sl~~~~~~lG~~v~~~~P~~l 212 (359)
T 2w37_A 177 LTLTFMGDGRNNVANSLLVTGAILGVNIHIVAPKAL 212 (359)
T ss_dssp CEEEEESCTTSHHHHHHHHHHHHHTCEEEEECCGGG
T ss_pred eEEEEECCCccchHHHHHHHHHHcCCEEEEECCccc
Confidence 346667765579999999999999999999999754
No 224
>3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A
Probab=22.69 E-value=75 Score=32.87 Aligned_cols=31 Identities=29% Similarity=0.469 Sum_probs=25.0
Q ss_pred EEEEeCCccchHHHHHHHHHHHhCCeEEEEeCC
Q 019910 143 DLVTCGGCQSAHATAVAVSCAERGLKSHLLLRG 175 (334)
Q Consensus 143 ~VVt~Gg~qsNh~~AvAaaaa~~Gl~~~ivv~~ 175 (334)
+||..|| |-.|.+.|.++++.|+++.++-..
T Consensus 30 DVIVIGg--G~AGl~AAlaLAr~G~kVlLIEk~ 60 (651)
T 3ces_A 30 DVIIIGG--GHAGTEAAMAAARMGQQTLLLTHN 60 (651)
T ss_dssp EEEEECC--SHHHHHHHHHHHHTTCCEEEEESC
T ss_pred CEEEECC--hHHHHHHHHHHHhCCCCEEEEeec
Confidence 4555776 668999999999999998888654
No 225
>3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A
Probab=22.53 E-value=1.2e+02 Score=28.27 Aligned_cols=32 Identities=22% Similarity=0.235 Sum_probs=25.6
Q ss_pred CEEEEeCCccchHHHHHHHHHHHhCCeEEEEeCC
Q 019910 142 TDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRG 175 (334)
Q Consensus 142 ~~VVt~Gg~qsNh~~AvAaaaa~~Gl~~~ivv~~ 175 (334)
++|.-.|+ |..+..++.+|+++|++++++-+.
T Consensus 13 ~~IlIlG~--G~lg~~la~aa~~lG~~viv~d~~ 44 (377)
T 3orq_A 13 ATIGIIGG--GQLGKMMAQSAQKMGYKVVVLDPS 44 (377)
T ss_dssp CEEEEECC--SHHHHHHHHHHHHTTCEEEEEESC
T ss_pred CEEEEECC--CHHHHHHHHHHHHCCCEEEEEECC
Confidence 34555776 458999999999999999988654
No 226
>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*
Probab=22.53 E-value=74 Score=32.24 Aligned_cols=32 Identities=16% Similarity=0.298 Sum_probs=26.2
Q ss_pred CEEEEeCCccchHHHHHHHHHHHhCCeEEEEeCC
Q 019910 142 TDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRG 175 (334)
Q Consensus 142 ~~VVt~Gg~qsNh~~AvAaaaa~~Gl~~~ivv~~ 175 (334)
.+||..|| |-.|.++|+.+++.|++++|+=..
T Consensus 273 ~DVvIIGg--GiaGlsaA~~La~~G~~V~vlEk~ 304 (676)
T 3ps9_A 273 REAAIIGG--GIASALLSLALLRRGWQVTLYCAD 304 (676)
T ss_dssp CEEEEECC--SHHHHHHHHHHHTTTCEEEEEESS
T ss_pred CCEEEECC--CHHHHHHHHHHHHCCCeEEEEeCC
Confidence 35666787 779999999999999998888653
No 227
>4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics, protein structure initiati nysgrc,oxidoreductase; 2.00A {Rhizobium etli}
Probab=22.35 E-value=3.7e+02 Score=23.09 Aligned_cols=32 Identities=19% Similarity=0.259 Sum_probs=23.8
Q ss_pred EEEEeCCccchHHHHHHHHHHHhCCeEEEEeCC
Q 019910 143 DLVTCGGCQSAHATAVAVSCAERGLKSHLLLRG 175 (334)
Q Consensus 143 ~VVt~Gg~qsNh~~AvAaaaa~~Gl~~~ivv~~ 175 (334)
.++-+|+ .|--|.++|...++.|.+.++....
T Consensus 28 ~vlITGa-s~gIG~a~a~~l~~~G~~V~~~~~~ 59 (272)
T 4e3z_A 28 VVLVTGG-SRGIGAAVCRLAARQGWRVGVNYAA 59 (272)
T ss_dssp EEEETTT-TSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred EEEEECC-CchHHHHHHHHHHHCCCEEEEEcCC
Confidence 3443565 5789999999999999987766443
No 228
>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus}
Probab=22.07 E-value=93 Score=28.93 Aligned_cols=30 Identities=17% Similarity=0.134 Sum_probs=23.7
Q ss_pred EEEEeCCccchHHHHHHHHHHHhCCeEEEEeC
Q 019910 143 DLVTCGGCQSAHATAVAVSCAERGLKSHLLLR 174 (334)
Q Consensus 143 ~VVt~Gg~qsNh~~AvAaaaa~~Gl~~~ivv~ 174 (334)
+||..|| |-.|.+.|+..++.|.+++++=.
T Consensus 2 dVvVIGa--GiaGLsaA~~La~~G~~V~vlE~ 31 (421)
T 3nrn_A 2 RAVVVGA--GLGGLLAGAFLARNGHEIIVLEK 31 (421)
T ss_dssp EEEEESC--SHHHHHHHHHHHHTTCEEEEECS
T ss_pred cEEEECC--CHHHHHHHHHHHHCCCeEEEEeC
Confidence 4555776 77999999999999999776633
No 229
>2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* 2wp9_A* 2ws3_A* 2wu2_A* 2wu5_A*
Probab=22.06 E-value=79 Score=31.73 Aligned_cols=31 Identities=23% Similarity=0.303 Sum_probs=25.1
Q ss_pred EEEEeCCccchHHHHHHHHHHHhCCeEEEEeCC
Q 019910 143 DLVTCGGCQSAHATAVAVSCAERGLKSHLLLRG 175 (334)
Q Consensus 143 ~VVt~Gg~qsNh~~AvAaaaa~~Gl~~~ivv~~ 175 (334)
+||..|| |-.|.+.|..+++.|++++++=..
T Consensus 9 DVvVVGa--G~AGl~AA~~la~~G~~V~vlEK~ 39 (588)
T 2wdq_A 9 DAVVIGA--GGAGMRAALQISQSGQTCALLSKV 39 (588)
T ss_dssp EEEEECC--SHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CEEEECc--CHHHHHHHHHHHHCCCcEEEEecC
Confidence 4555776 789999999999999998777654
No 230
>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus}
Probab=21.98 E-value=74 Score=30.94 Aligned_cols=32 Identities=34% Similarity=0.469 Sum_probs=25.3
Q ss_pred EEEEeCCccchHHHHHHHHHHHhCCeEEEEeCCC
Q 019910 143 DLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGE 176 (334)
Q Consensus 143 ~VVt~Gg~qsNh~~AvAaaaa~~Gl~~~ivv~~~ 176 (334)
+||..|| |=.|.++|+..++.|++++|+=+..
T Consensus 9 dVvIVGg--G~aGl~aA~~La~~G~~V~liE~~~ 40 (512)
T 3e1t_A 9 DLIVIGG--GPGGSTLASFVAMRGHRVLLLEREA 40 (512)
T ss_dssp EEEEECC--SHHHHHHHHHHHTTTCCEEEECSSC
T ss_pred CEEEECc--CHHHHHHHHHHHhCCCCEEEEccCC
Confidence 4555776 6689999999999999988885544
No 231
>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*
Probab=21.94 E-value=92 Score=27.33 Aligned_cols=32 Identities=16% Similarity=0.123 Sum_probs=25.3
Q ss_pred EEEEeCCccchHHHHHHHHHHHhCCeEEEEeCCC
Q 019910 143 DLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGE 176 (334)
Q Consensus 143 ~VVt~Gg~qsNh~~AvAaaaa~~Gl~~~ivv~~~ 176 (334)
+|+-.|| |-.|.++|..+++.|++++++=+..
T Consensus 9 ~vvIIG~--G~aGl~aA~~l~~~g~~v~lie~~~ 40 (332)
T 3lzw_A 9 DITIIGG--GPVGLFTAFYGGMRQASVKIIESLP 40 (332)
T ss_dssp EEEEECC--SHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred eEEEECC--CHHHHHHHHHHHHCCCCEEEEEcCC
Confidence 4555777 6689999999999999988885543
No 232
>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*
Probab=21.85 E-value=80 Score=27.83 Aligned_cols=31 Identities=19% Similarity=0.203 Sum_probs=24.9
Q ss_pred CEEEEeCCccchHHHHHHHHHHHhCCeEEEEeC
Q 019910 142 TDLVTCGGCQSAHATAVAVSCAERGLKSHLLLR 174 (334)
Q Consensus 142 ~~VVt~Gg~qsNh~~AvAaaaa~~Gl~~~ivv~ 174 (334)
.+|+..|| |-.|.++|..+++.|++++++=+
T Consensus 23 ~~vvIIG~--G~aGl~aA~~l~~~g~~v~vie~ 53 (338)
T 3itj_A 23 NKVTIIGS--GPAAHTAAIYLARAEIKPILYEG 53 (338)
T ss_dssp EEEEEECC--SHHHHHHHHHHHHTTCCCEEECC
T ss_pred CCEEEECc--CHHHHHHHHHHHHCCCCEEEEec
Confidence 34555777 67899999999999999887754
No 233
>3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472}
Probab=21.73 E-value=93 Score=28.65 Aligned_cols=31 Identities=6% Similarity=0.101 Sum_probs=24.1
Q ss_pred EEEEeCCccchHHHHHHHHHHHh--CCeEEEEeCC
Q 019910 143 DLVTCGGCQSAHATAVAVSCAER--GLKSHLLLRG 175 (334)
Q Consensus 143 ~VVt~Gg~qsNh~~AvAaaaa~~--Gl~~~ivv~~ 175 (334)
+|+..|| |=.|.++|.+.++. |++++|+=+.
T Consensus 2 dV~IVGa--G~aGl~~A~~L~~~~~G~~V~v~E~~ 34 (381)
T 3c4a_A 2 KILVIGA--GPAGLVFASQLKQARPLWAIDIVEKN 34 (381)
T ss_dssp EEEEECC--SHHHHHHHHHHHHHCTTSEEEEECSS
T ss_pred eEEEECC--CHHHHHHHHHHHhcCCCCCEEEEECC
Confidence 3555676 66899999999999 9998887544
No 234
>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*
Probab=21.59 E-value=95 Score=27.03 Aligned_cols=31 Identities=23% Similarity=0.200 Sum_probs=24.9
Q ss_pred EEEEeCCccchHHHHHHHHHHHhCCeEEEEeCC
Q 019910 143 DLVTCGGCQSAHATAVAVSCAERGLKSHLLLRG 175 (334)
Q Consensus 143 ~VVt~Gg~qsNh~~AvAaaaa~~Gl~~~ivv~~ 175 (334)
+|+-.|| |-.|.++|..+++.|++++++=+.
T Consensus 17 ~vvIIG~--G~aGl~aA~~l~~~g~~v~lie~~ 47 (323)
T 3f8d_A 17 DVIIVGL--GPAAYGAALYSARYMLKTLVIGET 47 (323)
T ss_dssp EEEEECC--SHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CEEEECc--cHHHHHHHHHHHHCCCcEEEEecc
Confidence 5665777 679999999999999998777553
No 235
>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}
Probab=21.58 E-value=91 Score=27.57 Aligned_cols=31 Identities=23% Similarity=0.274 Sum_probs=24.8
Q ss_pred EEEEeCCccchHHHHHHHHHHHhCCeEEEEeCC
Q 019910 143 DLVTCGGCQSAHATAVAVSCAERGLKSHLLLRG 175 (334)
Q Consensus 143 ~VVt~Gg~qsNh~~AvAaaaa~~Gl~~~ivv~~ 175 (334)
+|+-.|| |-.|.++|...++.|++++++=+.
T Consensus 5 ~vvIIG~--G~aGl~~A~~l~~~g~~v~vie~~ 35 (357)
T 4a9w_A 5 DVVVIGG--GQSGLSAGYFLRRSGLSYVILDAE 35 (357)
T ss_dssp EEEEECC--SHHHHHHHHHHHHSSCCEEEECCS
T ss_pred CEEEECc--CHHHHHHHHHHHHCCCCEEEEECC
Confidence 3555776 679999999999999998888554
No 236
>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A*
Probab=21.54 E-value=87 Score=29.11 Aligned_cols=32 Identities=19% Similarity=0.330 Sum_probs=25.5
Q ss_pred EEEEeCCccchHHHHHHHHHHHhCCe-EEEEeCCC
Q 019910 143 DLVTCGGCQSAHATAVAVSCAERGLK-SHLLLRGE 176 (334)
Q Consensus 143 ~VVt~Gg~qsNh~~AvAaaaa~~Gl~-~~ivv~~~ 176 (334)
+|+..|| |=.|.++|...++.|++ ++|+=+..
T Consensus 6 dVvIVGa--G~aGl~~A~~L~~~G~~~v~v~E~~~ 38 (410)
T 3c96_A 6 DILIAGA--GIGGLSCALALHQAGIGKVTLLESSS 38 (410)
T ss_dssp EEEEECC--SHHHHHHHHHHHHTTCSEEEEEESSS
T ss_pred eEEEECC--CHHHHHHHHHHHhCCCCeEEEEECCC
Confidence 4555776 66899999999999999 88886553
No 237
>3i09_A Periplasmic branched-chain amino acid-binding Pro; type I periplasmic binding protein, structural genomics, JOI for structural genomics; HET: MSE CIT; 1.80A {Burkholderia mallei}
Probab=21.49 E-value=4.3e+02 Score=23.48 Aligned_cols=34 Identities=24% Similarity=0.057 Sum_probs=25.1
Q ss_pred hcCCCEEEEeCCccchHHHHHHHHHHHhCCeEEEEe
Q 019910 138 DHIVTDLVTCGGCQSAHATAVAVSCAERGLKSHLLL 173 (334)
Q Consensus 138 ~~g~~~VVt~Gg~qsNh~~AvAaaaa~~Gl~~~ivv 173 (334)
+.++..||. ...|....+++-.+.+.+++.+...
T Consensus 69 ~~~v~~iiG--~~~s~~~~a~~~~~~~~~ip~i~~~ 102 (375)
T 3i09_A 69 RGGLDLLVG--GTNSATALSMNQVAAEKKKVYINIG 102 (375)
T ss_dssp HSCEEEEEE--CSCHHHHHHHHHHHHHHTCEEEECS
T ss_pred hCCCEEEEC--CCCcHHHHHHHHHHHHcCceEEEeC
Confidence 367777763 3346778888999999999987663
No 238
>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A*
Probab=21.46 E-value=1.3e+02 Score=28.08 Aligned_cols=31 Identities=23% Similarity=0.268 Sum_probs=24.9
Q ss_pred EEEEeCCccchHHHHHHHHHHHhCCeEEEEeCC
Q 019910 143 DLVTCGGCQSAHATAVAVSCAERGLKSHLLLRG 175 (334)
Q Consensus 143 ~VVt~Gg~qsNh~~AvAaaaa~~Gl~~~ivv~~ 175 (334)
+|...|+ |..+..+|.+|+++|++++++-+.
T Consensus 16 ~IlIlG~--G~~g~~la~aa~~~G~~vi~~d~~ 46 (389)
T 3q2o_A 16 TIGIIGG--GQLGRMMALAAKEMGYKIAVLDPT 46 (389)
T ss_dssp EEEEECC--SHHHHHHHHHHHHTTCEEEEEESS
T ss_pred EEEEECC--CHHHHHHHHHHHHcCCEEEEEeCC
Confidence 4555676 458999999999999999988654
No 239
>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}
Probab=21.40 E-value=1.7e+02 Score=24.03 Aligned_cols=29 Identities=21% Similarity=0.072 Sum_probs=16.3
Q ss_pred EEEcCCchhHHHHHHHHHHHcCCCCeEEEEEecc
Q 019910 297 FVVDAGTGTTAVGLGLGAICLGCVPLFNTLLVKL 330 (334)
Q Consensus 297 Vvvp~GtGgt~aGl~~g~k~lg~~~~VigV~~~g 330 (334)
+-+.+|+|....- +... +..+|+||+++.
T Consensus 65 LDiG~G~G~~~~~----l~~~-~~~~v~~vD~s~ 93 (205)
T 3grz_A 65 ADVGTGSGILAIA----AHKL-GAKSVLATDISD 93 (205)
T ss_dssp EEETCTTSHHHHH----HHHT-TCSEEEEEESCH
T ss_pred EEECCCCCHHHHH----HHHC-CCCEEEEEECCH
Confidence 4445555543333 2233 456999999853
No 240
>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B*
Probab=21.36 E-value=91 Score=28.46 Aligned_cols=32 Identities=31% Similarity=0.430 Sum_probs=24.8
Q ss_pred EEEEeCCccchHHHHHHHHHHH-hC-CeEEEEeCCC
Q 019910 143 DLVTCGGCQSAHATAVAVSCAE-RG-LKSHLLLRGE 176 (334)
Q Consensus 143 ~VVt~Gg~qsNh~~AvAaaaa~-~G-l~~~ivv~~~ 176 (334)
+|+..|| |=.|.++|+..++ .| ++++++=...
T Consensus 23 dVvIIG~--G~~Gl~~A~~La~~~G~~~V~vlE~~~ 56 (405)
T 2gag_B 23 DAIIVGG--GGHGLATAYFLAKNHGITNVAVLEKGW 56 (405)
T ss_dssp EEEEECC--SHHHHHHHHHHHHHHCCCCEEEECSSS
T ss_pred CEEEECc--CHHHHHHHHHHHHhcCCCcEEEEeCCC
Confidence 4555776 6799999999999 99 8888775443
No 241
>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}
Probab=21.25 E-value=96 Score=27.40 Aligned_cols=30 Identities=30% Similarity=0.416 Sum_probs=24.1
Q ss_pred EEEEeCCccchHHHHHHHHHHHhCCeEEEEeC
Q 019910 143 DLVTCGGCQSAHATAVAVSCAERGLKSHLLLR 174 (334)
Q Consensus 143 ~VVt~Gg~qsNh~~AvAaaaa~~Gl~~~ivv~ 174 (334)
+|+-.|+ |-.|.++|..+++.|++++++=+
T Consensus 18 dvvIIG~--G~aGl~aA~~l~~~g~~v~lie~ 47 (319)
T 3cty_A 18 DVVIVGA--GAAGFSAAVYAARSGFSVAILDK 47 (319)
T ss_dssp EEEEECC--SHHHHHHHHHHHHTTCCEEEEES
T ss_pred cEEEECc--CHHHHHHHHHHHhCCCcEEEEeC
Confidence 4555776 66899999999999999877754
No 242
>3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA; rossmann fold, FAD-binding domain, dinucleotide-binding motif; HET: FAD; 3.20A {Chlorobium tepidum}
Probab=21.23 E-value=83 Score=32.43 Aligned_cols=31 Identities=23% Similarity=0.404 Sum_probs=25.2
Q ss_pred EEEEeCCccchHHHHHHHHHHHhCCeEEEEeCC
Q 019910 143 DLVTCGGCQSAHATAVAVSCAERGLKSHLLLRG 175 (334)
Q Consensus 143 ~VVt~Gg~qsNh~~AvAaaaa~~Gl~~~ivv~~ 175 (334)
+||..|| |-.|.+.|.++++.|+++.++-..
T Consensus 23 DVIVIGg--G~AGl~AAlaLAr~G~kVlLIEk~ 53 (641)
T 3cp8_A 23 DVIVVGA--GHAGCEAALAVARGGLHCLLITSD 53 (641)
T ss_dssp EEEEECC--SHHHHHHHHHHHHTTCCEEEEESC
T ss_pred CEEEECc--cHHHHHHHHHHHHCCCcEEEEEec
Confidence 4555776 668999999999999999888654
No 243
>2o8n_A APOA-I binding protein; rossmann fold, protein binding; 2.00A {Mus musculus} PDB: 2dg2_A
Probab=21.16 E-value=1.3e+02 Score=27.33 Aligned_cols=33 Identities=21% Similarity=0.256 Sum_probs=24.7
Q ss_pred CEEEEeCCccchH---HHHHHHHHHHhCCeEEEEeCCC
Q 019910 142 TDLVTCGGCQSAH---ATAVAVSCAERGLKSHLLLRGE 176 (334)
Q Consensus 142 ~~VVt~Gg~qsNh---~~AvAaaaa~~Gl~~~ivv~~~ 176 (334)
+.+|-||. ||. |.++|..-+..|+++.++++..
T Consensus 81 ~VlVlcG~--GNNGGDGlv~AR~L~~~G~~V~V~~~~~ 116 (265)
T 2o8n_A 81 TVLVICGP--GNNGGDGLVCARHLKLFGYQPTIYYPKR 116 (265)
T ss_dssp EEEEEECS--SHHHHHHHHHHHHHHHTTCEEEEECCSC
T ss_pred eEEEEECC--CCCHHHHHHHHHHHHHCCCcEEEEEeCC
Confidence 45567885 777 4667777778899999998764
No 244
>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A
Probab=21.16 E-value=1.1e+02 Score=26.35 Aligned_cols=34 Identities=15% Similarity=-0.015 Sum_probs=17.7
Q ss_pred EEEEcCCchhHHHHHHHHHHHcCCCCeEEEEEec
Q 019910 296 KFVVDAGTGTTAVGLGLGAICLGCVPLFNTLLVK 329 (334)
Q Consensus 296 ~Vvvp~GtGgt~aGl~~g~k~lg~~~~VigV~~~ 329 (334)
.-|+..|.|+-...+..+.....+..+|+||+++
T Consensus 53 ~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis 86 (250)
T 1o9g_A 53 VTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVD 86 (250)
T ss_dssp EEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESC
T ss_pred CeEEECCCCCCHHHHHHHHHhccCCCeEEEEECC
Confidence 3445544444333333322211356799999985
No 245
>2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A*
Probab=21.11 E-value=73 Score=30.94 Aligned_cols=31 Identities=29% Similarity=0.429 Sum_probs=24.1
Q ss_pred CEEEEeCCccchHHHHHHHHHHHhCCeEEEEeCC
Q 019910 142 TDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRG 175 (334)
Q Consensus 142 ~~VVt~Gg~qsNh~~AvAaaaa~~Gl~~~ivv~~ 175 (334)
+.|| .|| |=.|.++|+.+++.|++++++=..
T Consensus 5 DVvI-IGg--Gi~G~~~A~~La~~G~~V~llE~~ 35 (501)
T 2qcu_A 5 DLIV-IGG--GINGAGIAADAAGRGLSVLMLEAQ 35 (501)
T ss_dssp SEEE-ECC--SHHHHHHHHHHHHTTCCEEEECSS
T ss_pred CEEE-ECc--CHHHHHHHHHHHhCCCCEEEEECC
Confidence 4444 676 679999999999999997776443
No 246
>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1}
Probab=21.06 E-value=89 Score=29.17 Aligned_cols=31 Identities=26% Similarity=0.296 Sum_probs=24.5
Q ss_pred EEEEeCCccchHHHHHHHHHHHh--CCeEEEEeCC
Q 019910 143 DLVTCGGCQSAHATAVAVSCAER--GLKSHLLLRG 175 (334)
Q Consensus 143 ~VVt~Gg~qsNh~~AvAaaaa~~--Gl~~~ivv~~ 175 (334)
+|+..|+ |=.|.++|+..++. |++++|+=+.
T Consensus 38 dVvIIGa--Gi~Gls~A~~La~~~pG~~V~vlE~~ 70 (405)
T 3c4n_A 38 DIVVIGA--GRMGAACAFYLRQLAPGRSLLLVEEG 70 (405)
T ss_dssp EEEEECC--SHHHHHHHHHHHHHCTTSCEEEECSS
T ss_pred CEEEECC--cHHHHHHHHHHHhcCCCCeEEEEeCC
Confidence 4555776 67999999999999 9997776544
No 247
>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A*
Probab=21.04 E-value=72 Score=31.56 Aligned_cols=32 Identities=25% Similarity=0.365 Sum_probs=24.9
Q ss_pred CCEEEEeCCccchHHHHHHHHHHHhCCeEEEEeCC
Q 019910 141 VTDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRG 175 (334)
Q Consensus 141 ~~~VVt~Gg~qsNh~~AvAaaaa~~Gl~~~ivv~~ 175 (334)
.+.|| .|+ |-.|.+.|..+++.|++++|+=..
T Consensus 127 ~DVvV-VGa--G~aGl~aA~~la~~G~~V~vlEk~ 158 (571)
T 1y0p_A 127 VDVVV-VGS--GGAGFSAAISATDSGAKVILIEKE 158 (571)
T ss_dssp CSEEE-ECC--SHHHHHHHHHHHHTTCCEEEECSS
T ss_pred CCEEE-ECC--CHHHHHHHHHHHHCCCcEEEEeCC
Confidence 34444 776 779999999999999998777433
No 248
>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*
Probab=20.83 E-value=82 Score=27.04 Aligned_cols=30 Identities=17% Similarity=0.108 Sum_probs=18.5
Q ss_pred EEEcCCchhHHHHHHHHHHHcCCCCeEEEEEecc
Q 019910 297 FVVDAGTGTTAVGLGLGAICLGCVPLFNTLLVKL 330 (334)
Q Consensus 297 Vvvp~GtGgt~aGl~~g~k~lg~~~~VigV~~~g 330 (334)
+=+.||+|..+.-++ ...+..+|+||+++.
T Consensus 39 LDiGcG~G~~~~~lA----~~~p~~~v~giD~s~ 68 (218)
T 3dxy_A 39 LEIGFGMGASLVAMA----KDRPEQDFLGIEVHS 68 (218)
T ss_dssp EEESCTTCHHHHHHH----HHCTTSEEEEECSCH
T ss_pred EEEeeeChHHHHHHH----HHCCCCeEEEEEecH
Confidence 334455555443333 356889999999863
No 249
>2fqx_A Membrane lipoprotein TMPC; ABC transport system, ligand-binding protein, guanosine, TP0319, transport protein; HET: GMP; 1.70A {Treponema pallidum} PDB: 2fqw_A* 2fqy_A*
Probab=20.80 E-value=1.2e+02 Score=27.38 Aligned_cols=33 Identities=15% Similarity=-0.201 Sum_probs=25.1
Q ss_pred CCEEEEcCCchhHHHHHHHHHHHcC---CCCeEEEEEe
Q 019910 294 AIKFVVDAGTGTTAVGLGLGAICLG---CVPLFNTLLV 328 (334)
Q Consensus 294 ~D~Vvvp~GtGgt~aGl~~g~k~lg---~~~~VigV~~ 328 (334)
+|.||+.. +.++.|+..+++++| .++.|+|++-
T Consensus 189 ~daI~~~~--d~~a~Gv~~a~~e~g~~P~dv~viG~D~ 224 (318)
T 2fqx_A 189 VNVIFQVA--GGTGNGVIKEARDRRLNGQDVWVIGVDR 224 (318)
T ss_dssp CCEEEEEC--GGGHHHHHHHHHHHHHTTCCCEEEEEES
T ss_pred CcEEEECC--CCCchHHHHHHHhhhhccCCcEEEEEec
Confidence 78888654 566788888888865 4688999975
No 250
>3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, csgid, center for structural genomics O infectious diseases; 1.90A {Staphylococcus aureus subsp} SCOP: c.2.1.0 PDB: 3sj7_A*
Probab=20.80 E-value=3.9e+02 Score=22.65 Aligned_cols=32 Identities=25% Similarity=0.394 Sum_probs=24.5
Q ss_pred CEEEEeCCccchHHHHHHHHHHHhCCeEEEEeCC
Q 019910 142 TDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRG 175 (334)
Q Consensus 142 ~~VVt~Gg~qsNh~~AvAaaaa~~Gl~~~ivv~~ 175 (334)
+-|| +|+ .|--|.++|...++.|.+.++..+.
T Consensus 6 ~~lV-TGa-s~gIG~~ia~~l~~~G~~V~~~~~~ 37 (246)
T 3osu_A 6 SALV-TGA-SRGIGRSIALQLAEEGYNVAVNYAG 37 (246)
T ss_dssp EEEE-TTC-SSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred EEEE-ECC-CChHHHHHHHHHHHCCCEEEEEeCC
Confidence 3445 555 5778999999999999998877654
No 251
>2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A*
Probab=20.78 E-value=1.3e+02 Score=29.37 Aligned_cols=32 Identities=22% Similarity=0.212 Sum_probs=25.8
Q ss_pred CEEEEeCCccchHHHHHHHHHHHhCCeEEEEeCC
Q 019910 142 TDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRG 175 (334)
Q Consensus 142 ~~VVt~Gg~qsNh~~AvAaaaa~~Gl~~~ivv~~ 175 (334)
.+|+..|| |=.|.++|..+++.|++++++=..
T Consensus 93 ~dVvIVGg--G~aGl~aA~~La~~G~~V~liEk~ 124 (497)
T 2bry_A 93 TKCLVVGA--GPCGLRAAVELALLGARVVLVEKR 124 (497)
T ss_dssp CEEEEECC--SHHHHHHHHHHHHTTCEEEEEESC
T ss_pred CCEEEECc--cHHHHHHHHHHHHCCCeEEEEEec
Confidence 45665777 668999999999999998888654
No 252
>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}
Probab=20.77 E-value=94 Score=25.22 Aligned_cols=32 Identities=6% Similarity=-0.139 Sum_probs=20.1
Q ss_pred EEEEcCCchhHHHHHHHHHHHcCCC--------CeEEEEEecc
Q 019910 296 KFVVDAGTGTTAVGLGLGAICLGCV--------PLFNTLLVKL 330 (334)
Q Consensus 296 ~Vvvp~GtGgt~aGl~~g~k~lg~~--------~~VigV~~~g 330 (334)
.+-+.+|+|....-++. ..+.. .+|+||+++.
T Consensus 26 vLDlGcG~G~~~~~la~---~~~~~~~~~~~~~~~v~~vD~s~ 65 (196)
T 2nyu_A 26 VLDCGAAPGAWSQVAVQ---KVNAAGTDPSSPVGFVLGVDLLH 65 (196)
T ss_dssp EEEETCCSCHHHHHHHH---HTTTTCCCTTSCCCEEEEECSSC
T ss_pred EEEeCCCCCHHHHHHHH---HhccccccccCCCceEEEEechh
Confidence 45666777665554443 23432 7999999864
No 253
>2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A* 1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A* 3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A* 3aec_A* ...
Probab=20.76 E-value=86 Score=31.88 Aligned_cols=31 Identities=19% Similarity=0.278 Sum_probs=25.3
Q ss_pred EEEEeCCccchHHHHHHHHHHHhCCeEEEEeCC
Q 019910 143 DLVTCGGCQSAHATAVAVSCAERGLKSHLLLRG 175 (334)
Q Consensus 143 ~VVt~Gg~qsNh~~AvAaaaa~~Gl~~~ivv~~ 175 (334)
+||..|| |-.|.+.|+.+++.|++++++-..
T Consensus 20 DVvVVG~--G~AGl~AAl~aa~~G~~V~vlEK~ 50 (621)
T 2h88_A 20 DAVVVGA--GGAGLRAAFGLSEAGFNTACVTKL 50 (621)
T ss_dssp EEEEECC--SHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CEEEECc--cHHHHHHHHHHHHCCCcEEEEecc
Confidence 4555776 789999999999999998877654
No 254
>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcrip regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum}
Probab=20.73 E-value=1.7e+02 Score=26.14 Aligned_cols=33 Identities=9% Similarity=-0.039 Sum_probs=26.9
Q ss_pred CCEEEEcCCchhHHHHHHHHHHHcCC----CCeEEEEEe
Q 019910 294 AIKFVVDAGTGTTAVGLGLGAICLGC----VPLFNTLLV 328 (334)
Q Consensus 294 ~D~Vvvp~GtGgt~aGl~~g~k~lg~----~~~VigV~~ 328 (334)
||.||+ .+...+.|+..+++.+|. ++.|+|++-
T Consensus 232 ~~ai~~--~nd~~A~g~~~al~~~G~~vP~disvig~D~ 268 (333)
T 3jvd_A 232 PDALIV--ASPRLMAGVMRAFTRLNVRVPHDVVIGGYDD 268 (333)
T ss_dssp CSEEEE--CCHHHHHHHHHHHHHTTCCTTTTCEEEEESC
T ss_pred CcEEEE--CCHHHHHHHHHHHHHcCCCCCCceEEEEECC
Confidence 899986 467788899999999995 577888763
No 255
>3hs3_A Ribose operon repressor; PSI-II, NYSGXRC, periplasmic binding protein, structural genomics, protein structure initiative; 1.60A {Lactobacillus acidophilus}
Probab=20.71 E-value=1e+02 Score=26.56 Aligned_cols=44 Identities=7% Similarity=-0.261 Sum_probs=31.5
Q ss_pred HHHHHHHHhhhcCCCCCCEEEEcCCchhHHHHHHHHHHHcCC----CCeEEEEE
Q 019910 278 RLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGLGAICLGC----VPLFNTLL 327 (334)
Q Consensus 278 ~la~EI~eq~~~g~~~~D~Vvvp~GtGgt~aGl~~g~k~lg~----~~~VigV~ 327 (334)
..+.++.+.. ++||.||+ .+...+.|+..+++.+|. ++.|+|++
T Consensus 167 ~~~~~~l~~~----~~~~ai~~--~~d~~A~g~~~al~~~g~~vP~di~vig~d 214 (277)
T 3hs3_A 167 ISAQSALNKS----NQFDAIIT--VNDLYAAEIIKEAKRRNLKIPDDFQLVGYD 214 (277)
T ss_dssp HHHHHHHHTG----GGCSEEEC--SSHHHHHHHHHHHHHTTCCTTTTCEEECSB
T ss_pred HHHHHHHcCC----CCCCEEEE--CCHHHHHHHHHHHHHcCCCCCCceEEEeeC
Confidence 3445555442 36888886 456788999999999995 57788765
No 256
>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1
Probab=20.58 E-value=78 Score=29.95 Aligned_cols=32 Identities=19% Similarity=0.280 Sum_probs=24.4
Q ss_pred CEEEEeCCccchHHHHHHHHHHHhCCeEEEEeCCC
Q 019910 142 TDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGE 176 (334)
Q Consensus 142 ~~VVt~Gg~qsNh~~AvAaaaa~~Gl~~~ivv~~~ 176 (334)
+.|| .|| |-.|.+.|..+++.|++++++=+..
T Consensus 6 dViI-IGg--G~aGl~aA~~la~~G~~V~vlEk~~ 37 (401)
T 2gqf_A 6 ENII-IGA--GAAGLFCAAQLAKLGKSVTVFDNGK 37 (401)
T ss_dssp SEEE-ECC--SHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred CEEE-ECC--cHHHHHHHHHHHhCCCCEEEEeCCC
Confidence 4444 676 6799999999999999987775443
No 257
>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A
Probab=20.47 E-value=4.1e+02 Score=22.87 Aligned_cols=34 Identities=26% Similarity=0.182 Sum_probs=25.3
Q ss_pred CCCEEEEeCCccchHHHHHHHHHHHhCCeEEEEeCC
Q 019910 140 IVTDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRG 175 (334)
Q Consensus 140 g~~~VVt~Gg~qsNh~~AvAaaaa~~Gl~~~ivv~~ 175 (334)
|...|| +|+ .+--|.++|..-++.|.++++..+.
T Consensus 18 ~k~~lV-TGa-s~gIG~aia~~l~~~G~~V~~~~~~ 51 (270)
T 3is3_A 18 GKVALV-TGS-GRGIGAAVAVHLGRLGAKVVVNYAN 51 (270)
T ss_dssp TCEEEE-SCT-TSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred CCEEEE-ECC-CchHHHHHHHHHHHCCCEEEEEcCC
Confidence 334455 555 4778999999999999988876654
No 258
>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*
Probab=20.06 E-value=71 Score=32.53 Aligned_cols=31 Identities=23% Similarity=0.327 Sum_probs=25.3
Q ss_pred EEEEeCCccchHHHHHHHHHHHhCCeEEEEeCC
Q 019910 143 DLVTCGGCQSAHATAVAVSCAERGLKSHLLLRG 175 (334)
Q Consensus 143 ~VVt~Gg~qsNh~~AvAaaaa~~Gl~~~ivv~~ 175 (334)
+||..|| |-.|.++|+.+++.|++++|+=..
T Consensus 266 DVvIIGg--GiaGlsaA~~La~~G~~V~vlEk~ 296 (689)
T 3pvc_A 266 DIAIIGG--GIVSALTALALQRRGAVVTLYCAD 296 (689)
T ss_dssp SEEEECC--SHHHHHHHHHHHTTTCCEEEEESS
T ss_pred CEEEECC--cHHHHHHHHHHHHCCCcEEEEeCC
Confidence 4555776 779999999999999998888654
No 259
>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens}
Probab=20.04 E-value=86 Score=30.52 Aligned_cols=31 Identities=19% Similarity=0.326 Sum_probs=25.1
Q ss_pred EEEEeCCccchHHHHHHHHHHHhCCeEEEEeCC
Q 019910 143 DLVTCGGCQSAHATAVAVSCAERGLKSHLLLRG 175 (334)
Q Consensus 143 ~VVt~Gg~qsNh~~AvAaaaa~~Gl~~~ivv~~ 175 (334)
.|+..|| |=.|.++|+..++.|++++|+=+.
T Consensus 7 dVlIVGa--G~aGl~~A~~La~~G~~v~viEr~ 37 (535)
T 3ihg_A 7 DVLVVGA--GLGGLSTAMFLARQGVRVLVVERR 37 (535)
T ss_dssp EEEEECC--SHHHHHHHHHHHTTTCCEEEECSS
T ss_pred cEEEECc--CHHHHHHHHHHHHCCCCEEEEeCC
Confidence 4555776 679999999999999998888544
No 260
>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A*
Probab=20.03 E-value=1e+02 Score=28.54 Aligned_cols=30 Identities=27% Similarity=0.289 Sum_probs=23.4
Q ss_pred EEEEeCCccchHHHHHHHHHHHhCCeEEEEeC
Q 019910 143 DLVTCGGCQSAHATAVAVSCAERGLKSHLLLR 174 (334)
Q Consensus 143 ~VVt~Gg~qsNh~~AvAaaaa~~Gl~~~ivv~ 174 (334)
+||..|| |=.|.+.|+..++.|++++|+=.
T Consensus 3 dVvVIGa--G~aGl~aA~~L~~~G~~V~vlE~ 32 (431)
T 3k7m_X 3 DAIVVGG--GFSGLKAARDLTNAGKKVLLLEG 32 (431)
T ss_dssp EEEEECC--BHHHHHHHHHHHHTTCCEEEECS
T ss_pred CEEEECC--cHHHHHHHHHHHHcCCeEEEEec
Confidence 3454776 66899999999999998877743
No 261
>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}
Probab=20.03 E-value=65 Score=30.82 Aligned_cols=33 Identities=21% Similarity=0.184 Sum_probs=22.7
Q ss_pred CCEEEEcCCchhHHHHHHHHHHHcCCCCeEEEEEec
Q 019910 294 AIKFVVDAGTGTTAVGLGLGAICLGCVPLFNTLLVK 329 (334)
Q Consensus 294 ~D~Vvvp~GtGgt~aGl~~g~k~lg~~~~VigV~~~ 329 (334)
.+.+|+.+|+|+-+..+.++ ..|. .+|+||+.+
T Consensus 83 ~~k~VLDvG~GtGiLs~~Aa--~aGA-~~V~ave~s 115 (376)
T 4hc4_A 83 RGKTVLDVGAGTGILSIFCA--QAGA-RRVYAVEAS 115 (376)
T ss_dssp TTCEEEEETCTTSHHHHHHH--HTTC-SEEEEEECS
T ss_pred CCCEEEEeCCCccHHHHHHH--HhCC-CEEEEEeCh
Confidence 46788888888866555433 3443 589999975
No 262
>4iiu_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAP; 2.10A {Escherichia coli} PDB: 4iiv_A*
Probab=20.02 E-value=3.5e+02 Score=23.19 Aligned_cols=35 Identities=20% Similarity=0.219 Sum_probs=25.7
Q ss_pred CCCEEEEeCCccchHHHHHHHHHHHhCCeEEEEeCCC
Q 019910 140 IVTDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGE 176 (334)
Q Consensus 140 g~~~VVt~Gg~qsNh~~AvAaaaa~~Gl~~~ivv~~~ 176 (334)
+.+.|| +|+ .+--|.++|...++.|.+.++.....
T Consensus 26 ~k~vlV-TGa-s~gIG~~la~~l~~~G~~v~i~~~r~ 60 (267)
T 4iiu_A 26 SRSVLV-TGA-SKGIGRAIARQLAADGFNIGVHYHRD 60 (267)
T ss_dssp CCEEEE-TTT-TSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred CCEEEE-ECC-CChHHHHHHHHHHHCCCEEEEEeCCc
Confidence 333445 565 47789999999999999987766553
Done!