BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019911
(334 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1A5J|A Chain A, Chicken B-Myb Dna Binding Domain, Repeat 2 And Repeat3,
Nmr, 32 Structures
Length = 110
Score = 101 bits (251), Expect = 6e-22, Method: Composition-based stats.
Identities = 49/105 (46%), Positives = 71/105 (67%), Gaps = 3/105 (2%)
Query: 27 DLRRGPWTVEEDFKLINYISNHGEGRWNCLARCAGLK-RTGKSCRLRWLNYLRPDVRRGN 85
DL +GPWT EED K+I + +G +W +A+ LK R GK CR RW N+L P+V++ +
Sbjct: 4 DLVKGPWTKEEDQKVIELVKKYGTKQWTLIAK--HLKGRLGKQCRERWHNHLNPEVKKSS 61
Query: 86 ITLEEQLMILELHSRWGNRWSKIAQHLPGRTDNEIKNYWRTRVQK 130
T EE +I E H GNRW++IA+ LPGRTDN +KN+W + +++
Sbjct: 62 WTEEEDRIIFEAHKVLGNRWAEIAKLLPGRTDNAVKNHWNSTIKR 106
Score = 37.7 bits (86), Expect = 0.010, Method: Composition-based stats.
Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 79 PDVRRGNITLEEQLMILELHSRWGNR-WSKIAQHLPGRTDNEIKNYWRTRVQKHAKQ 134
PD+ +G T EE ++EL ++G + W+ IA+HL GR + + W + K+
Sbjct: 3 PDLVKGPWTKEEDQKVIELVKKYGTKQWTLIAKHLKGRLGKQCRERWHNHLNPEVKK 59
>pdb|1H8A|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex3
Length = 128
Score = 100 bits (248), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 48/99 (48%), Positives = 70/99 (70%), Gaps = 3/99 (3%)
Query: 27 DLRRGPWTVEEDFKLINYISNHGEGRWNCLARCAGLK-RTGKSCRLRWLNYLRPDVRRGN 85
+L +GPWT EED ++I ++ +G RW+ +A+ LK R GK CR RW N+L P+V++ +
Sbjct: 24 ELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAK--HLKGRIGKQCRERWHNHLNPEVKKTS 81
Query: 86 ITLEEQLMILELHSRWGNRWSKIAQHLPGRTDNEIKNYW 124
T EE +I + H R GNRW++IA+ LPGRTDN +KN+W
Sbjct: 82 WTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAVKNHW 120
Score = 44.3 bits (103), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Query: 64 RTGKSCRLRWLNYLRPDVRRGNITLEEQLMILELHSRWG-NRWSKIAQHLPGRTDNEIKN 122
RT C+ RW L P++ +G T EE ++E ++G RWS IA+HL GR + +
Sbjct: 8 RTDVQCQHRWQKVLNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRE 67
Query: 123 YWRTRVQKHAKQ 134
W + K+
Sbjct: 68 RWHNHLNPEVKK 79
>pdb|1GV2|A Chain A, Crystal Structure Of C-Myb R2r3
Length = 105
Score = 99.8 bits (247), Expect = 2e-21, Method: Composition-based stats.
Identities = 49/105 (46%), Positives = 73/105 (69%), Gaps = 3/105 (2%)
Query: 27 DLRRGPWTVEEDFKLINYISNHGEGRWNCLARCAGLK-RTGKSCRLRWLNYLRPDVRRGN 85
+L +GPWT EED ++I + +G RW+ +A+ LK R GK CR RW N+L P+V++ +
Sbjct: 1 ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAK--HLKGRIGKQCRERWHNHLNPEVKKTS 58
Query: 86 ITLEEQLMILELHSRWGNRWSKIAQHLPGRTDNEIKNYWRTRVQK 130
T EE +I + H R GNRW++IA+ LPGRTDN IKN+W + +++
Sbjct: 59 WTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRR 103
Score = 33.5 bits (75), Expect = 0.16, Method: Composition-based stats.
Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 83 RGNITLEEQLMILELHSRWG-NRWSKIAQHLPGRTDNEIKNYWRTRVQKHAKQ 134
+G T EE +++L ++G RWS IA+HL GR + + W + K+
Sbjct: 4 KGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKK 56
>pdb|1MSE|C Chain C, Solution Structure Of A Specific Dna Complex Of The Myb
Dna- Binding Domain With Cooperative Recognition Helices
pdb|1MSF|C Chain C, Solution Structure Of A Specific Dna Complex Of The Myb
Dna- Binding Domain With Cooperative Recognition Helices
Length = 105
Score = 99.8 bits (247), Expect = 2e-21, Method: Composition-based stats.
Identities = 49/104 (47%), Positives = 72/104 (69%), Gaps = 3/104 (2%)
Query: 28 LRRGPWTVEEDFKLINYISNHGEGRWNCLARCAGLK-RTGKSCRLRWLNYLRPDVRRGNI 86
L +GPWT EED ++I + +G RW+ +A+ LK R GK CR RW N+L P+V++ +
Sbjct: 2 LIKGPWTKEEDQRVIKLVQKYGPKRWSVIAK--HLKGRIGKQCRERWHNHLNPEVKKTSW 59
Query: 87 TLEEQLMILELHSRWGNRWSKIAQHLPGRTDNEIKNYWRTRVQK 130
T EE +I + H R GNRW++IA+ LPGRTDN IKN+W + +++
Sbjct: 60 TEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRR 103
Score = 33.5 bits (75), Expect = 0.15, Method: Composition-based stats.
Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 83 RGNITLEEQLMILELHSRWG-NRWSKIAQHLPGRTDNEIKNYWRTRVQKHAKQ 134
+G T EE +++L ++G RWS IA+HL GR + + W + K+
Sbjct: 4 KGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKK 56
>pdb|1H88|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex1
pdb|1H89|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex2
Length = 159
Score = 99.4 bits (246), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 49/99 (49%), Positives = 69/99 (69%), Gaps = 3/99 (3%)
Query: 27 DLRRGPWTVEEDFKLINYISNHGEGRWNCLARCAGLK-RTGKSCRLRWLNYLRPDVRRGN 85
+L +GPWT EED ++I + +G RW+ +A+ LK R GK CR RW N+L P+V++ +
Sbjct: 55 ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAK--HLKGRIGKQCRERWHNHLNPEVKKTS 112
Query: 86 ITLEEQLMILELHSRWGNRWSKIAQHLPGRTDNEIKNYW 124
T EE +I + H R GNRW++IA+ LPGRTDN IKN+W
Sbjct: 113 WTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHW 151
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 51/103 (49%), Gaps = 2/103 (1%)
Query: 33 WTVEEDFKLINYISNHGEGRWNCLARCAGLKRTGKSCRLRWLNYLRPDVRRGNITLEEQL 92
WT EED KL + +G W +A RT C+ RW L P++ +G T EE
Sbjct: 9 WTREEDEKLKKLVEQNGTDDWKVIANYLP-NRTDVQCQHRWQKVLNPELIKGPWTKEEDQ 67
Query: 93 MILELHSRWG-NRWSKIAQHLPGRTDNEIKNYWRTRVQKHAKQ 134
+++L ++G RWS IA+HL GR + + W + K+
Sbjct: 68 RVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKK 110
>pdb|3ZQC|A Chain A, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
Domain Bound To A Promoter Sequence Reveals A Unique C-
Terminal Beta-Hairpin Conformation
pdb|3ZQC|D Chain D, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
Domain Bound To A Promoter Sequence Reveals A Unique C-
Terminal Beta-Hairpin Conformation
pdb|3ZQC|G Chain G, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
Domain Bound To A Promoter Sequence Reveals A Unique C-
Terminal Beta-Hairpin Conformation
pdb|3ZQC|J Chain J, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
Domain Bound To A Promoter Sequence Reveals A Unique C-
Terminal Beta-Hairpin Conformation
Length = 131
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 55/101 (54%), Gaps = 1/101 (0%)
Query: 30 RGPWTVEEDFKLINYISNHGEGRWNCLARCAGLKRTGKSCRLRWLNYLRPDVRRGNITLE 89
+GP+T ED + Y+ +G W + R+ K CR RW N+L P V + T E
Sbjct: 2 KGPFTEAEDDLIREYVKENGPQNWPRITSFLP-NRSPKQCRERWFNHLDPAVVKHAWTPE 60
Query: 90 EQLMILELHSRWGNRWSKIAQHLPGRTDNEIKNYWRTRVQK 130
E I + + G++WS IA+ +PGRTDN IKN W + + K
Sbjct: 61 EDETIFRNYLKLGSKWSVIAKLIPGRTDNAIKNRWNSSISK 101
>pdb|3OSF|A Chain A, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-2f-13 Dna
pdb|3OSF|D Chain D, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-2f-13 Dna
pdb|3OSG|A Chain A, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-1-12 Dna
pdb|3OSG|D Chain D, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-1-12 Dna
Length = 126
Score = 64.7 bits (156), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 51/98 (52%), Gaps = 2/98 (2%)
Query: 29 RRGPWTVEEDFKLINYISNHGEGRWNCLARCAGLKRTGKSCRLRWLNYLRPDVRRGNITL 88
++ +T EED L ++ HG W +A R + CR RW NYL P + T
Sbjct: 10 KKQKFTPEEDEMLKRAVAQHGSD-WKMIA-ATFPNRNARQCRDRWKNYLAPSISHTPWTA 67
Query: 89 EEQLMILELHSRWGNRWSKIAQHLPGRTDNEIKNYWRT 126
EE ++++ +G +W+ IA+ PGRTD IKN W T
Sbjct: 68 EEDALLVQKIQEYGRQWAIIAKFFPGRTDIHIKNRWVT 105
>pdb|2K9N|A Chain A, Solution Nmr Structure Of The R2r3 Dna Binding Domain Of
Myb1 Protein From Protozoan Parasite Trichomonas
Vaginalis
pdb|2KDZ|A Chain A, Structure Of The R2r3 Dna Binding Domain Of Myb1 Protein
From Protozoan Parasite Trichomonas Vaginalis In Complex
With Mre-1MRE-2r Dna
Length = 107
Score = 62.0 bits (149), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 57/103 (55%), Gaps = 1/103 (0%)
Query: 34 TVEEDFKLINYISNHGEGRWNCLARCAGLKRTGKSCRLRWLNYLRPDVRRGNITLEEQLM 93
T EED KL + +G W +++ + R + CR RW NY+ P +R + EE ++
Sbjct: 5 TEEEDLKLQQLVMRYGAKDWIRISQLM-ITRNPRQCRERWNNYINPALRTDPWSPEEDML 63
Query: 94 ILELHSRWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKHAKQLK 136
+ + ++ +G +W+KI++ L R+DN I+N W + AK K
Sbjct: 64 LDQKYAEYGPKWNKISKFLKNRSDNNIRNRWMMIARHRAKHQK 106
>pdb|1MBJ|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 3
pdb|1MBK|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 3
Length = 53
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/44 (54%), Positives = 33/44 (75%)
Query: 81 VRRGNITLEEQLMILELHSRWGNRWSKIAQHLPGRTDNEIKNYW 124
V++ + T EE +I + H R GNRW++IA+ LPGRTDN IKN+W
Sbjct: 1 VKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHW 44
>pdb|1IDY|A Chain A, Structure Of Myb Transforming Protein, Nmr, Minimized
Average Structure
pdb|1IDZ|A Chain A, Structure Of Myb Transforming Protein, Nmr, 20 Structures
Length = 54
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 38/51 (74%)
Query: 80 DVRRGNITLEEQLMILELHSRWGNRWSKIAQHLPGRTDNEIKNYWRTRVQK 130
+V++ + T EE ++ + H R GNRW++IA+ LPGRTDN IKN+W + +++
Sbjct: 2 EVKKTSWTEEEDRILYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRR 52
>pdb|1GVD|A Chain A, Crystal Structure Of C-Myb R2 V103l Mutant
Length = 52
Score = 51.6 bits (122), Expect = 6e-07, Method: Composition-based stats.
Identities = 26/54 (48%), Positives = 35/54 (64%), Gaps = 3/54 (5%)
Query: 28 LRRGPWTVEEDFKLINYISNHGEGRWNCLARCAGLK-RTGKSCRLRWLNYLRPD 80
L +GPWT EED +LI + +G RW+ +A+ LK R GK CR RW N+L P+
Sbjct: 1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAK--HLKGRIGKQCRERWHNHLNPE 52
Score = 32.3 bits (72), Expect = 0.40, Method: Composition-based stats.
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 83 RGNITLEEQLMILELHSRWG-NRWSKIAQHLPGRTDNEIKNYWRTRV 128
+G T EE +++L ++G RWS IA+HL GR + + W +
Sbjct: 3 KGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHL 49
>pdb|1GV5|A Chain A, Crystal Structure Of C-Myb R2
Length = 52
Score = 50.4 bits (119), Expect = 1e-06, Method: Composition-based stats.
Identities = 25/54 (46%), Positives = 35/54 (64%), Gaps = 3/54 (5%)
Query: 28 LRRGPWTVEEDFKLINYISNHGEGRWNCLARCAGLK-RTGKSCRLRWLNYLRPD 80
L +GPWT EED ++I + +G RW+ +A+ LK R GK CR RW N+L P+
Sbjct: 1 LIKGPWTKEEDQRVIKLVQKYGPKRWSVIAK--HLKGRIGKQCRERWHNHLNPE 52
Score = 32.7 bits (73), Expect = 0.29, Method: Composition-based stats.
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 83 RGNITLEEQLMILELHSRWG-NRWSKIAQHLPGRTDNEIKNYWRTRV 128
+G T EE +++L ++G RWS IA+HL GR + + W +
Sbjct: 3 KGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHL 49
>pdb|1MBG|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 2
pdb|1MBH|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 2
Length = 53
Score = 50.4 bits (119), Expect = 1e-06, Method: Composition-based stats.
Identities = 25/54 (46%), Positives = 35/54 (64%), Gaps = 3/54 (5%)
Query: 28 LRRGPWTVEEDFKLINYISNHGEGRWNCLARCAGLK-RTGKSCRLRWLNYLRPD 80
L +GPWT EED ++I + +G RW+ +A+ LK R GK CR RW N+L P+
Sbjct: 1 LIKGPWTKEEDQRVIELVQKYGPKRWSVIAK--HLKGRIGKQCRERWHNHLNPE 52
Score = 34.3 bits (77), Expect = 0.10, Method: Composition-based stats.
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 83 RGNITLEEQLMILELHSRWG-NRWSKIAQHLPGRTDNEIKNYWRTRV 128
+G T EE ++EL ++G RWS IA+HL GR + + W +
Sbjct: 3 KGPWTKEEDQRVIELVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHL 49
>pdb|3AQB|B Chain B, M. Luteus B-P 26 Heterodimeric Hexaprenyl Diphosphate
Synthase In Complex With Magnesium
pdb|3AQB|D Chain D, M. Luteus B-P 26 Heterodimeric Hexaprenyl Diphosphate
Synthase In Complex With Magnesium
pdb|3AQC|B Chain B, M. Luteus B-P 26 Heterodimeric Hexaprenyl Diphosphate
Synthase In Complex With Magnesium And Fpp Analogue
pdb|3AQC|D Chain D, M. Luteus B-P 26 Heterodimeric Hexaprenyl Diphosphate
Synthase In Complex With Magnesium And Fpp Analogue
Length = 325
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 16/71 (22%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 80 DVRRGNITLEEQLMILELHSRWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKHAKQLKCDV 139
D+R G+IT I L + ++ + +HL +D+E+ Y ++V+++ + ++
Sbjct: 230 DIRNGHITYPLMAAIANLKEQDDDKLEAVVKHLTSTSDDEVYQYIVSQVKQYGIE-PAEL 288
Query: 140 NSKQFKDTMRY 150
S+++ D +Y
Sbjct: 289 LSRKYGDKAKY 299
>pdb|2CU7|A Chain A, Solution Structure Of The Sant Domain Of Human Kiaa1915
Protein
Length = 72
Score = 32.0 bits (71), Expect = 0.46, Method: Composition-based stats.
Identities = 16/56 (28%), Positives = 35/56 (62%), Gaps = 3/56 (5%)
Query: 87 TLEEQLMILELHSRWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKHAKQLKCDVNSK 142
T+EE+ + + +++G RW+KI++ + RT ++K+Y R Q ++KC ++ +
Sbjct: 13 TIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYAR---QYFKNKVKCGLDKE 65
>pdb|1MBE|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 1
pdb|1MBF|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 1
Length = 53
Score = 29.6 bits (65), Expect = 2.4, Method: Composition-based stats.
Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Query: 33 WTVEEDFKLINYISNHGEGRWNCLARCAGLKRTGKSCRLRWLNYLRPD 80
WT EED KL + +G W +A RT C+ RW L P+
Sbjct: 6 WTREEDEKLKKLVEQNGTDDWKVIANYLP-NRTDVQCQHRWQKVLNPE 52
>pdb|1GUU|A Chain A, Crystal Structure Of C-Myb R1
Length = 52
Score = 29.6 bits (65), Expect = 2.4, Method: Composition-based stats.
Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Query: 33 WTVEEDFKLINYISNHGEGRWNCLARCAGLKRTGKSCRLRWLNYLRPD 80
WT EED KL + +G W +A RT C+ RW L P+
Sbjct: 6 WTREEDEKLKKLVEQNGTDDWKVIANYLP-NRTDVQCQHRWQKVLNPE 52
>pdb|2D9A|A Chain A, Solution Structure Of Rsgi Ruh-050, A Myb Dna-Binding
Domain In Mouse Cdna
Length = 60
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Query: 33 WTVEEDFKLINYISNHGEGRWNCLARCAGLKRTGKSCRLRWLNYL 77
WT EED +L + G+ W LA RT + C+ RWL L
Sbjct: 11 WTHEEDEQLRALVRQFGQQDWKFLA-SHFPNRTDQQCQYRWLRVL 54
>pdb|2JUH|A Chain A, Solution Structure Of Dna Binding Domain Of Ngtrf1
Length = 121
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 47/109 (43%), Gaps = 14/109 (12%)
Query: 13 NSKSSSTTISEEDLDLRRGPWTVEEDFKLINYISNHGEGRWNCLARCA---GLKRTGKSC 69
N KS + +S+ + R P++V E L+ + + G GRW + A RT
Sbjct: 3 NQKSKRSELSQRRI---RRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDL 59
Query: 70 RLRWLNYLR-----PDVRRGNITLEEQL-MILELHSRWGNRWSKIAQHL 112
+ +W + P RRG ++ L +L H+ W + K QH+
Sbjct: 60 KDKWKTLVHTASIAPQQRRGEPVPQDLLDRVLAAHAYWSQQQGK--QHV 106
>pdb|4EEF|G Chain G, Crystal Structure Of The Designed Inhibitor Protein
F-Hb80.4 In Complex With The 1918 Influenza Virus
Hemagglutinin.
pdb|4EEF|H Chain H, Crystal Structure Of The Designed Inhibitor Protein
F-Hb80.4 In Complex With The 1918 Influenza Virus
Hemagglutinin.
pdb|4EEF|I Chain I, Crystal Structure Of The Designed Inhibitor Protein
F-Hb80.4 In Complex With The 1918 Influenza Virus
Hemagglutinin
Length = 74
Score = 29.3 bits (64), Expect = 2.8, Method: Composition-based stats.
Identities = 10/22 (45%), Positives = 17/22 (77%)
Query: 103 NRWSKIAQHLPGRTDNEIKNYW 124
+RW K+AQ++ GRT E+K ++
Sbjct: 44 DRWKKVAQYVKGRTPEEVKKHY 65
>pdb|2DIM|A Chain A, Solution Structure Of The Myb_dna-Binding Domain Of
Human Cell Division Cycle 5-Like Protein
Length = 70
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 5/53 (9%)
Query: 33 WTVEEDFKLINYISNHGEGRWNCLARCAGL--KRTGKSCRLRWLNYLRPDVRR 83
W ED L + +G+ +W +R A L +++ K C+ RW +L P +++
Sbjct: 12 WRNTEDEILKAAVMKYGKNQW---SRIASLLHRKSAKQCKARWYEWLDPSIKK 61
>pdb|2AJE|A Chain A, Solution Structure Of The Arabidopsis Thaliana Telomeric
Repeat-Binding Protein Dna Binding Domain
Length = 105
Score = 28.9 bits (63), Expect = 4.3, Method: Composition-based stats.
Identities = 23/81 (28%), Positives = 33/81 (40%), Gaps = 9/81 (11%)
Query: 30 RGPWTVEEDFKLINYISNHGEGRWNCLARCA---GLKRTGKSCRLRWLNY-----LRPDV 81
R P++V E L+ + G GRW + CA RT + +W + P
Sbjct: 13 RRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTAKISPQQ 72
Query: 82 RRGNITLEEQL-MILELHSRW 101
RRG +E L +L H W
Sbjct: 73 RRGEPVPQELLNRVLNAHGYW 93
>pdb|2ELK|A Chain A, Solution Structure Of The Sant Domain Of Fission Yeast
Spcc24b10.08c Protein
Length = 58
Score = 28.1 bits (61), Expect = 7.0, Method: Composition-based stats.
Identities = 14/42 (33%), Positives = 20/42 (47%)
Query: 33 WTVEEDFKLINYISNHGEGRWNCLARCAGLKRTGKSCRLRWL 74
W +E+ LI+ G G W +A G RT + CR +L
Sbjct: 12 WGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYL 53
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.130 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,688,411
Number of Sequences: 62578
Number of extensions: 383078
Number of successful extensions: 895
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 852
Number of HSP's gapped (non-prelim): 38
length of query: 334
length of database: 14,973,337
effective HSP length: 99
effective length of query: 235
effective length of database: 8,778,115
effective search space: 2062857025
effective search space used: 2062857025
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)