Query 019911
Match_columns 334
No_of_seqs 232 out of 1498
Neff 5.8
Searched_HMMs 29240
Date Mon Mar 25 08:56:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019911.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019911hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1gv2_A C-MYB, MYB proto-oncoge 100.0 8.3E-34 2.9E-38 231.5 12.1 104 27-131 1-104 (105)
2 2k9n_A MYB24; R2R3 domain, DNA 100.0 8.1E-34 2.8E-38 232.9 11.9 105 30-135 1-105 (107)
3 3zqc_A MYB3; transcription-DNA 100.0 4.3E-33 1.5E-37 236.3 11.1 109 29-138 1-109 (131)
4 1h8a_C AMV V-MYB, MYB transfor 100.0 7E-33 2.4E-37 233.9 12.0 107 24-131 21-127 (128)
5 3osg_A MYB21; transcription-DN 100.0 1.1E-32 3.8E-37 232.4 12.5 106 24-131 5-110 (126)
6 1h89_C C-MYB, MYB proto-oncoge 100.0 2.6E-31 8.8E-36 231.9 7.4 121 27-148 3-124 (159)
7 1h89_C C-MYB, MYB proto-oncoge 100.0 1.5E-30 5.1E-35 227.1 11.5 107 24-131 52-158 (159)
8 1h8a_C AMV V-MYB, MYB transfor 99.9 1.4E-22 4.7E-27 170.8 6.3 92 56-148 1-93 (128)
9 2dim_A Cell division cycle 5-l 99.9 2.7E-22 9.2E-27 152.6 4.8 66 25-91 4-69 (70)
10 1ign_A Protein (RAP1); RAP1,ye 99.8 9.1E-19 3.1E-23 161.0 9.1 105 26-131 4-200 (246)
11 2juh_A Telomere binding protei 99.7 1.6E-18 5.5E-23 145.1 6.4 86 22-107 9-103 (121)
12 2llk_A Cyclin-D-binding MYB-li 99.7 4.5E-18 1.5E-22 130.7 5.4 58 70-128 10-67 (73)
13 2roh_A RTBP1, telomere binding 99.7 1.6E-17 5.6E-22 139.2 9.0 85 20-104 21-114 (122)
14 2d9a_A B-MYB, MYB-related prot 99.7 9.9E-18 3.4E-22 123.5 6.5 57 25-82 3-59 (60)
15 2din_A Cell division cycle 5-l 99.7 2.1E-17 7.2E-22 124.1 7.1 61 76-137 2-62 (66)
16 1gvd_A MYB proto-oncogene prot 99.7 1.7E-17 5.9E-22 118.8 5.5 52 28-80 1-52 (52)
17 2dim_A Cell division cycle 5-l 99.7 2.3E-17 7.9E-22 125.2 6.2 65 78-142 4-69 (70)
18 1guu_A C-MYB, MYB proto-oncoge 99.7 2.5E-17 8.6E-22 117.9 4.9 52 28-80 1-52 (52)
19 1ity_A TRF1; helix-turn-helix, 99.7 4.7E-17 1.6E-21 123.3 6.2 65 23-87 3-68 (69)
20 2cu7_A KIAA1915 protein; nucle 99.7 7.1E-17 2.4E-21 123.3 6.8 58 77-134 3-60 (72)
21 2d9a_A B-MYB, MYB-related prot 99.7 7E-17 2.4E-21 118.9 5.5 56 78-133 3-59 (60)
22 1guu_A C-MYB, MYB proto-oncoge 99.6 2.6E-16 9E-21 112.5 6.1 50 81-130 1-51 (52)
23 1gvd_A MYB proto-oncogene prot 99.6 3.5E-16 1.2E-20 112.0 6.1 50 81-130 1-51 (52)
24 1x41_A Transcriptional adaptor 99.6 3.4E-16 1.2E-20 115.5 6.0 54 26-80 4-57 (60)
25 3sjm_A Telomeric repeat-bindin 99.6 2.3E-16 7.7E-21 118.3 5.0 56 27-82 8-64 (64)
26 1ity_A TRF1; helix-turn-helix, 99.6 8.3E-16 2.8E-20 116.4 7.2 61 76-136 3-66 (69)
27 2din_A Cell division cycle 5-l 99.6 2.5E-16 8.5E-21 118.2 2.8 59 24-85 3-61 (66)
28 2yum_A ZZZ3 protein, zinc fing 99.6 7.3E-16 2.5E-20 118.3 4.7 60 25-85 3-67 (75)
29 1w0t_A Telomeric repeat bindin 99.6 1.8E-15 6E-20 108.9 6.4 49 82-130 1-52 (53)
30 2elk_A SPCC24B10.08C protein; 99.6 1.6E-15 5.4E-20 111.3 5.8 52 26-77 5-56 (58)
31 1x41_A Transcriptional adaptor 99.6 2.7E-15 9.3E-20 110.7 6.4 53 78-130 3-56 (60)
32 1w0t_A Telomeric repeat bindin 99.6 2E-15 6.8E-20 108.6 5.0 50 29-78 1-51 (53)
33 2cu7_A KIAA1915 protein; nucle 99.6 2E-15 6.7E-20 115.3 4.6 58 24-83 3-60 (72)
34 3sjm_A Telomeric repeat-bindin 99.6 4.2E-15 1.4E-19 111.3 6.3 53 80-132 8-63 (64)
35 2yum_A ZZZ3 protein, zinc fing 99.5 4.1E-15 1.4E-19 114.1 5.9 59 78-136 3-67 (75)
36 2elk_A SPCC24B10.08C protein; 99.5 1.7E-14 5.7E-19 105.8 6.5 50 79-128 5-56 (58)
37 3osg_A MYB21; transcription-DN 99.5 1.6E-14 5.6E-19 121.2 6.9 68 78-145 6-73 (126)
38 1gv2_A C-MYB, MYB proto-oncoge 99.5 1.8E-14 6E-19 116.9 6.0 69 80-148 1-70 (105)
39 2aje_A Telomere repeat-binding 99.5 2.8E-14 9.6E-19 116.7 6.1 82 21-102 4-94 (105)
40 2llk_A Cyclin-D-binding MYB-li 99.5 3.7E-14 1.3E-18 108.9 6.0 58 22-83 15-72 (73)
41 2ltp_A Nuclear receptor corepr 99.2 3.7E-15 1.3E-19 118.5 0.0 56 76-131 9-64 (89)
42 2ckx_A NGTRF1, telomere bindin 99.5 1E-13 3.6E-18 108.9 7.4 69 31-100 1-79 (83)
43 2k9n_A MYB24; R2R3 domain, DNA 99.4 8.2E-14 2.8E-18 113.7 6.0 64 83-146 1-65 (107)
44 3zqc_A MYB3; transcription-DNA 99.4 7.8E-14 2.7E-18 117.8 4.6 83 24-112 48-130 (131)
45 2yus_A SWI/SNF-related matrix- 99.4 3.2E-13 1.1E-17 105.1 7.4 52 23-76 11-62 (79)
46 2cqr_A RSGI RUH-043, DNAJ homo 99.4 1.5E-13 5.3E-18 105.4 4.8 60 18-78 6-68 (73)
47 2cqr_A RSGI RUH-043, DNAJ homo 99.4 4.1E-13 1.4E-17 103.1 5.8 52 79-130 14-69 (73)
48 2juh_A Telomere binding protei 99.4 6.2E-13 2.1E-17 111.2 6.8 59 77-135 11-79 (121)
49 2ltp_A Nuclear receptor corepr 99.0 8.2E-14 2.8E-18 110.7 0.0 59 19-79 5-63 (89)
50 2yus_A SWI/SNF-related matrix- 99.3 6.6E-13 2.3E-17 103.3 5.0 48 80-127 15-62 (79)
51 2aje_A Telomere repeat-binding 99.3 5.4E-12 1.9E-16 103.1 8.6 51 79-129 9-64 (105)
52 2roh_A RTBP1, telomere binding 99.3 1.5E-12 5E-17 109.1 4.8 61 79-139 27-97 (122)
53 2ckx_A NGTRF1, telomere bindin 99.3 4E-12 1.4E-16 99.8 6.6 48 84-131 1-53 (83)
54 1x58_A Hypothetical protein 49 99.3 8E-12 2.7E-16 92.6 6.1 49 82-130 7-58 (62)
55 1ign_A Protein (RAP1); RAP1,ye 99.2 5.1E-12 1.7E-16 116.3 5.1 55 79-133 4-64 (246)
56 2cjj_A Radialis; plant develop 99.2 3.2E-11 1.1E-15 96.6 6.7 50 82-131 7-60 (93)
57 2cjj_A Radialis; plant develop 99.1 4.8E-11 1.7E-15 95.5 4.0 48 29-77 7-57 (93)
58 2eqr_A N-COR1, N-COR, nuclear 99.0 9.5E-10 3.2E-14 81.2 6.2 48 82-129 11-58 (61)
59 3hm5_A DNA methyltransferase 1 98.9 3.5E-09 1.2E-13 84.6 7.4 65 67-135 18-87 (93)
60 2eqr_A N-COR1, N-COR, nuclear 98.9 2.8E-09 9.5E-14 78.7 5.6 51 25-77 7-57 (61)
61 1x58_A Hypothetical protein 49 98.8 2.4E-09 8.3E-14 79.3 4.2 50 28-79 6-58 (62)
62 2iw5_B Protein corest, REST co 98.8 9.7E-09 3.3E-13 93.8 7.6 49 82-130 132-180 (235)
63 2cqq_A RSGI RUH-037, DNAJ homo 98.8 5.1E-09 1.7E-13 80.0 4.2 51 27-79 5-58 (72)
64 2cqq_A RSGI RUH-037, DNAJ homo 98.8 1E-08 3.6E-13 78.2 5.9 50 80-130 5-58 (72)
65 1wgx_A KIAA1903 protein; MYB D 98.6 3.4E-08 1.2E-12 75.5 4.7 47 31-78 9-58 (73)
66 2xag_B REST corepressor 1; ami 98.6 3.3E-08 1.1E-12 99.4 5.3 46 84-129 381-426 (482)
67 1fex_A TRF2-interacting telome 98.5 9.4E-08 3.2E-12 70.2 3.7 48 30-78 2-58 (59)
68 1fex_A TRF2-interacting telome 98.4 2.1E-07 7.2E-12 68.3 5.0 47 83-129 2-58 (59)
69 1wgx_A KIAA1903 protein; MYB D 98.4 2.4E-07 8.3E-12 70.8 4.9 48 83-130 8-59 (73)
70 2iw5_B Protein corest, REST co 98.4 3.1E-07 1.1E-11 83.9 5.9 49 28-78 131-179 (235)
71 4eef_G F-HB80.4, designed hema 98.1 4.7E-07 1.6E-11 69.0 1.0 44 30-74 20-66 (74)
72 2yqk_A Arginine-glutamic acid 98.1 6.8E-06 2.3E-10 60.8 6.7 49 78-126 4-53 (63)
73 1ug2_A 2610100B20RIK gene prod 98.1 6.6E-06 2.3E-10 65.0 6.8 49 85-133 35-86 (95)
74 1ofc_X ISWI protein; nuclear p 98.1 1.9E-05 6.6E-10 75.3 11.0 102 32-134 112-279 (304)
75 2lr8_A CAsp8-associated protei 97.2 1.3E-06 4.4E-11 65.5 0.0 46 85-131 16-64 (70)
76 2yqk_A Arginine-glutamic acid 97.9 1.6E-05 5.5E-10 58.8 5.2 49 25-75 4-53 (63)
77 4eef_G F-HB80.4, designed hema 97.8 4.6E-06 1.6E-10 63.5 1.2 43 83-125 20-66 (74)
78 4iej_A DNA methyltransferase 1 97.8 6.7E-05 2.3E-09 59.7 7.4 61 71-135 22-87 (93)
79 3hm5_A DNA methyltransferase 1 97.6 1.7E-05 5.7E-10 63.3 2.2 50 28-78 28-81 (93)
80 4a69_C Nuclear receptor corepr 97.6 9.8E-05 3.3E-09 58.8 6.0 44 83-126 43-86 (94)
81 2crg_A Metastasis associated p 97.6 0.00013 4.4E-09 55.1 6.3 44 83-126 8-52 (70)
82 2xag_B REST corepressor 1; ami 97.5 8.6E-05 3E-09 74.7 6.0 49 28-78 378-426 (482)
83 4a69_C Nuclear receptor corepr 97.3 0.00021 7.2E-09 56.9 4.6 44 30-75 43-86 (94)
84 2crg_A Metastasis associated p 97.3 0.00023 8E-09 53.6 4.6 45 29-75 7-52 (70)
85 1ug2_A 2610100B20RIK gene prod 97.3 0.0002 6.8E-09 56.6 3.9 47 30-77 33-81 (95)
86 2ebi_A DNA binding protein GT- 97.2 9.1E-05 3.1E-09 57.5 1.9 49 29-77 3-63 (86)
87 2ebi_A DNA binding protein GT- 97.2 0.00031 1.1E-08 54.5 4.4 50 82-131 3-66 (86)
88 4b4c_A Chromodomain-helicase-D 97.0 0.0038 1.3E-07 55.6 10.6 105 27-131 4-197 (211)
89 2y9y_A Imitation switch protei 96.9 0.0066 2.2E-07 59.3 11.2 105 32-136 125-297 (374)
90 2lr8_A CAsp8-associated protei 95.8 0.00023 8E-09 53.3 0.0 46 31-78 15-62 (70)
91 4iej_A DNA methyltransferase 1 94.9 0.03 1E-06 44.4 4.7 51 27-78 27-81 (93)
92 1irz_A ARR10-B; helix-turn-hel 94.5 0.12 4.1E-06 38.2 6.9 48 81-128 5-57 (64)
93 4b4c_A Chromodomain-helicase-D 92.2 0.14 4.9E-06 45.2 4.9 30 30-59 134-163 (211)
94 1irz_A ARR10-B; helix-turn-hel 91.8 0.32 1.1E-05 35.9 5.4 50 27-76 4-56 (64)
95 1ofc_X ISWI protein; nuclear p 90.9 0.39 1.3E-05 45.7 6.6 48 84-131 111-159 (304)
96 2xb0_X Chromo domain-containin 90.7 0.17 5.7E-06 47.4 3.8 28 31-58 169-196 (270)
97 2xb0_X Chromo domain-containin 85.6 0.53 1.8E-05 44.0 3.6 26 85-110 170-196 (270)
98 2rq5_A Protein jumonji; develo 78.7 1.8 6.1E-05 35.6 3.9 57 40-99 46-113 (121)
99 2y9y_A Imitation switch protei 72.9 2.8 9.6E-05 40.8 4.1 32 29-60 227-261 (374)
100 2li6_A SWI/SNF chromatin-remod 67.5 3.4 0.00012 33.3 2.9 39 40-79 53-98 (116)
101 2kk0_A AT-rich interactive dom 62.7 7.8 0.00027 32.5 4.4 60 40-99 68-140 (145)
102 2jrz_A Histone demethylase jar 62.2 4.9 0.00017 32.4 2.9 41 39-79 43-93 (117)
103 1ig6_A MRF-2, modulator recogn 60.7 6 0.0002 31.3 3.1 41 39-79 36-87 (107)
104 1wxp_A THO complex subunit 1; 60.4 51 0.0017 25.9 8.7 71 92-163 19-99 (110)
105 2k27_A Paired box protein PAX- 57.1 56 0.0019 26.5 8.8 66 31-101 24-99 (159)
106 3cz6_A DNA-binding protein RAP 56.0 8.9 0.0003 33.2 3.6 26 25-50 109-142 (168)
107 1c20_A DEAD ringer protein; DN 54.7 5.7 0.00019 32.5 2.1 40 40-79 56-106 (128)
108 2eqy_A RBP2 like, jumonji, at 53.8 7.5 0.00026 31.6 2.7 40 40-79 46-95 (122)
109 2kk0_A AT-rich interactive dom 53.3 29 0.00099 28.9 6.3 42 93-134 68-122 (145)
110 2cxy_A BAF250B subunit, HBAF25 52.7 6.5 0.00022 32.1 2.1 40 40-79 55-104 (125)
111 1c20_A DEAD ringer protein; DN 52.0 34 0.0012 27.8 6.4 43 91-133 54-109 (128)
112 2jxj_A Histone demethylase jar 51.9 5.7 0.00019 30.7 1.6 40 40-79 40-89 (96)
113 1k78_A Paired box protein PAX5 51.9 89 0.003 24.8 10.1 79 30-112 30-118 (149)
114 2li6_A SWI/SNF chromatin-remod 51.1 12 0.00042 29.9 3.5 39 93-131 53-99 (116)
115 2o8x_A Probable RNA polymerase 49.6 30 0.001 23.7 5.1 44 86-131 16-59 (70)
116 2lm1_A Lysine-specific demethy 49.3 7.1 0.00024 30.7 1.8 41 39-79 47-97 (107)
117 2lm1_A Lysine-specific demethy 48.7 29 0.00099 27.1 5.3 39 93-131 48-98 (107)
118 2jrz_A Histone demethylase jar 47.8 26 0.00088 28.1 5.0 40 92-131 43-94 (117)
119 1ku3_A Sigma factor SIGA; heli 46.4 27 0.00091 24.8 4.5 45 86-132 11-59 (73)
120 3i4p_A Transcriptional regulat 46.3 13 0.00043 31.0 3.0 44 36-81 3-46 (162)
121 1kkx_A Transcription regulator 44.5 5 0.00017 32.8 0.2 39 40-79 52-97 (123)
122 2cxy_A BAF250B subunit, HBAF25 43.3 33 0.0011 27.7 5.0 39 93-131 55-105 (125)
123 2yqf_A Ankyrin-1; death domain 42.9 1.1E+02 0.0037 23.8 8.0 75 87-162 14-99 (111)
124 2eqy_A RBP2 like, jumonji, at 42.9 35 0.0012 27.5 5.1 39 93-131 46-96 (122)
125 1kkx_A Transcription regulator 42.1 27 0.00092 28.4 4.3 40 94-133 53-100 (123)
126 2p7v_B Sigma-70, RNA polymeras 40.7 29 0.00099 24.2 3.8 41 90-131 9-53 (68)
127 2rq5_A Protein jumonji; develo 40.4 34 0.0012 27.8 4.6 79 27-131 4-97 (121)
128 3e7l_A Transcriptional regulat 38.2 23 0.00079 24.8 2.9 30 36-66 19-48 (63)
129 3hug_A RNA polymerase sigma fa 38.0 59 0.002 24.0 5.4 42 89-131 40-81 (92)
130 2p1m_A SKP1-like protein 1A; F 36.1 31 0.0011 28.9 3.9 35 54-96 119-153 (160)
131 2ib1_A Death domain containing 33.7 66 0.0023 24.6 5.1 73 88-162 5-83 (91)
132 2jxj_A Histone demethylase jar 33.3 25 0.00086 26.9 2.6 38 93-130 40-89 (96)
133 3i4p_A Transcriptional regulat 32.6 39 0.0013 27.9 3.9 43 89-132 3-46 (162)
134 2e1c_A Putative HTH-type trans 31.8 42 0.0014 28.2 4.0 44 36-81 27-70 (171)
135 1umq_A Photosynthetic apparatu 31.7 48 0.0017 24.9 3.9 34 32-66 37-70 (81)
136 1or7_A Sigma-24, RNA polymeras 30.5 76 0.0026 25.9 5.4 33 99-132 153-185 (194)
137 2jvw_A Uncharacterized protein 28.3 31 0.0011 26.7 2.3 47 38-97 18-71 (88)
138 3ulq_B Transcriptional regulat 27.9 1.1E+02 0.0039 22.7 5.6 46 83-131 27-72 (90)
139 2q1z_A RPOE, ECF SIGE; ECF sig 27.6 53 0.0018 26.7 3.9 32 99-131 148-179 (184)
140 1x3u_A Transcriptional regulat 27.4 1.2E+02 0.0042 21.0 5.5 42 86-130 17-58 (79)
141 1u78_A TC3 transposase, transp 27.4 2.1E+02 0.0071 21.9 11.1 89 30-123 4-99 (141)
142 1eto_A FIS, factor for inversi 27.3 71 0.0024 24.7 4.3 31 35-66 57-87 (98)
143 3v7d_A Suppressor of kinetocho 26.1 49 0.0017 28.1 3.4 34 54-95 127-160 (169)
144 3c57_A Two component transcrip 25.9 1.1E+02 0.0037 22.8 5.2 44 85-131 27-70 (95)
145 1tty_A Sigma-A, RNA polymerase 25.5 97 0.0033 22.6 4.7 41 90-131 22-66 (87)
146 2dbb_A Putative HTH-type trans 25.4 1.1E+02 0.0039 24.3 5.5 43 89-132 9-52 (151)
147 1g2h_A Transcriptional regulat 24.7 60 0.002 22.5 3.2 33 32-66 17-49 (61)
148 1je8_A Nitrate/nitrite respons 24.2 1.2E+02 0.004 22.0 4.9 43 85-130 21-63 (82)
149 1fse_A GERE; helix-turn-helix 24.0 1.3E+02 0.0043 20.6 4.9 45 84-131 10-54 (74)
150 2ast_A S-phase kinase-associat 23.8 49 0.0017 27.5 3.0 35 54-96 120-154 (159)
151 1ntc_A Protein (nitrogen regul 23.7 48 0.0016 24.9 2.6 28 37-65 52-79 (91)
152 1pdn_C Protein (PRD paired); p 23.6 1.5E+02 0.0051 22.1 5.7 66 31-100 16-90 (128)
153 2jpc_A SSRB; DNA binding prote 23.2 1.3E+02 0.0045 19.8 4.7 39 91-131 3-41 (61)
154 2e1c_A Putative HTH-type trans 23.1 95 0.0032 25.9 4.7 43 89-132 27-70 (171)
155 2dbb_A Putative HTH-type trans 22.8 56 0.0019 26.3 3.1 39 36-76 9-47 (151)
156 3eyi_A Z-DNA-binding protein 1 22.1 79 0.0027 23.5 3.4 37 33-70 7-43 (72)
157 2cyy_A Putative HTH-type trans 21.8 69 0.0023 25.8 3.5 41 36-78 7-47 (151)
158 2cyy_A Putative HTH-type trans 21.3 1.2E+02 0.0043 24.2 5.0 43 89-132 7-50 (151)
159 1xsv_A Hypothetical UPF0122 pr 20.7 1.7E+02 0.0058 22.7 5.5 42 89-131 28-69 (113)
160 3cz6_A DNA-binding protein RAP 20.2 72 0.0025 27.5 3.3 28 68-95 98-126 (168)
161 1rp3_A RNA polymerase sigma fa 20.1 1.5E+02 0.0051 24.8 5.4 40 91-131 192-231 (239)
No 1
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=100.00 E-value=8.3e-34 Score=231.51 Aligned_cols=104 Identities=45% Similarity=0.889 Sum_probs=99.7
Q ss_pred CCCcCCCCHHHHHHHHHHHHHhCCCChHHHHhhhCCccChhhhhhhhhcccCCCCCCCCCCHHHHHHHHHHHHHhCCChh
Q 019911 27 DLRRGPWTVEEDFKLINYISNHGEGRWNCLARCAGLKRTGKSCRLRWLNYLRPDVRRGNITLEEQLMILELHSRWGNRWS 106 (334)
Q Consensus 27 ~lkKg~WT~EEDe~L~~lV~~~g~~~W~~IA~~l~~~Rt~~qCr~Rw~~~L~p~lkrg~WT~EED~~Ll~lv~~~G~~W~ 106 (334)
+++||+||+|||++|+++|.+||..+|..||+.|+ +|+++||++||.++|+|.+++++||+|||.+|+++|.+||++|.
T Consensus 1 ~l~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~ 79 (105)
T 1gv2_A 1 ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWA 79 (105)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTST-TCCHHHHHHHHHHTTCCCCCCCCCCHHHHHHHHHHHHHHSSCHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhc-CCCHHHHHHHHHhccCCcccccCCCHHHHHHHHHHHHHhCCCHH
Confidence 47899999999999999999999888999999998 99999999999999999999999999999999999999999999
Q ss_pred HHhhhCCCCCHHHHHHHHHHhhhHH
Q 019911 107 KIAQHLPGRTDNEIKNYWRTRVQKH 131 (334)
Q Consensus 107 ~IAk~lpgRT~~qcrnRW~~~lr~~ 131 (334)
.||++|||||+++||+||+.++++.
T Consensus 80 ~Ia~~l~gRt~~~~k~rw~~~~~~~ 104 (105)
T 1gv2_A 80 EIAKLLPGRTDNAIKNHWNSTMRRK 104 (105)
T ss_dssp HHHTTCTTCCHHHHHHHHHHHTC--
T ss_pred HHHHHcCCCCHHHHHHHHHHHHhcc
Confidence 9999999999999999999998875
No 2
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=100.00 E-value=8.1e-34 Score=232.94 Aligned_cols=105 Identities=30% Similarity=0.607 Sum_probs=101.3
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCChHHHHhhhCCccChhhhhhhhhcccCCCCCCCCCCHHHHHHHHHHHHHhCCChhHHh
Q 019911 30 RGPWTVEEDFKLINYISNHGEGRWNCLARCAGLKRTGKSCRLRWLNYLRPDVRRGNITLEEQLMILELHSRWGNRWSKIA 109 (334)
Q Consensus 30 Kg~WT~EEDe~L~~lV~~~g~~~W~~IA~~l~~~Rt~~qCr~Rw~~~L~p~lkrg~WT~EED~~Ll~lv~~~G~~W~~IA 109 (334)
||+||+|||++|+++|.+||..+|..||..|+ +|+++||++||.++|+|.+++|+||+|||.+|+++|.+||++|..||
T Consensus 1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~L~p~i~~~~WT~eEd~~L~~~~~~~G~~W~~Ia 79 (107)
T 2k9n_A 1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMI-TRNPRQCRERWNNYINPALRTDPWSPEEDMLLDQKYAEYGPKWNKIS 79 (107)
T ss_dssp CCSSCHHHHHHHHHHHHHHCSSCHHHHHHHTT-TSCHHHHHHHHHHHSSSCCTTCCCCHHHHHHHHHHHHHTCSCHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHhhhcC-CCCHHHHHHHHHHHHcccccccccCHHHHHHHHHHHHHhCcCHHHHH
Confidence 78999999999999999999889999999998 99999999999999999999999999999999999999999999999
Q ss_pred hhCCCCCHHHHHHHHHHhhhHHhhhc
Q 019911 110 QHLPGRTDNEIKNYWRTRVQKHAKQL 135 (334)
Q Consensus 110 k~lpgRT~~qcrnRW~~~lr~~~kk~ 135 (334)
++|||||+++||+||..++++..+..
T Consensus 80 ~~l~gRt~~~~k~rw~~l~r~~~~~~ 105 (107)
T 2k9n_A 80 KFLKNRSDNNIRNRWMMIARHRAKHQ 105 (107)
T ss_dssp HHHSSSCHHHHHHHHHHHHHHHHSST
T ss_pred HHCCCCCHHHHHHHHHHHHhhHHHhh
Confidence 99999999999999999999876653
No 3
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=100.00 E-value=4.3e-33 Score=236.31 Aligned_cols=109 Identities=35% Similarity=0.626 Sum_probs=103.8
Q ss_pred CcCCCCHHHHHHHHHHHHHhCCCChHHHHhhhCCccChhhhhhhhhcccCCCCCCCCCCHHHHHHHHHHHHHhCCChhHH
Q 019911 29 RRGPWTVEEDFKLINYISNHGEGRWNCLARCAGLKRTGKSCRLRWLNYLRPDVRRGNITLEEQLMILELHSRWGNRWSKI 108 (334)
Q Consensus 29 kKg~WT~EEDe~L~~lV~~~g~~~W~~IA~~l~~~Rt~~qCr~Rw~~~L~p~lkrg~WT~EED~~Ll~lv~~~G~~W~~I 108 (334)
.||+||+|||++|+++|.+||.++|..||..|+ +|+++||++||.++|+|.+++|+||+|||.+|+++|.+||++|+.|
T Consensus 1 vKg~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~~I 79 (131)
T 3zqc_A 1 MKGPFTEAEDDLIREYVKENGPQNWPRITSFLP-NRSPKQCRERWFNHLDPAVVKHAWTPEEDETIFRNYLKLGSKWSVI 79 (131)
T ss_dssp CCSSCCHHHHHHHHHHHHHHCSCCGGGGTTSCT-TSCHHHHHHHHHHHTSTTCCCSCCCHHHHHHHHHHHHHSCSCHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhCcCCHHHHHHHHC-CCCHHHHHHHHhhccCccccCCCCCHHHHHHHHHHHHHHCcCHHHH
Confidence 389999999999999999999889999999998 9999999999999999999999999999999999999999999999
Q ss_pred hhhCCCCCHHHHHHHHHHhhhHHhhhccCC
Q 019911 109 AQHLPGRTDNEIKNYWRTRVQKHAKQLKCD 138 (334)
Q Consensus 109 Ak~lpgRT~~qcrnRW~~~lr~~~kk~~~~ 138 (334)
|++|+|||+++||+||+++|++.++....+
T Consensus 80 a~~l~gRt~~~~k~rw~~~l~~~~~~~~~~ 109 (131)
T 3zqc_A 80 AKLIPGRTDNAIKNRWNSSISKRISTNSNH 109 (131)
T ss_dssp TTTSTTCCHHHHHHHHHHTTGGGCCCCTTS
T ss_pred HHHcCCCCHHHHHHHHHHHHHHHhhcCCCc
Confidence 999999999999999999999987765443
No 4
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=100.00 E-value=7e-33 Score=233.89 Aligned_cols=107 Identities=43% Similarity=0.844 Sum_probs=102.4
Q ss_pred cCCCCCcCCCCHHHHHHHHHHHHHhCCCChHHHHhhhCCccChhhhhhhhhcccCCCCCCCCCCHHHHHHHHHHHHHhCC
Q 019911 24 EDLDLRRGPWTVEEDFKLINYISNHGEGRWNCLARCAGLKRTGKSCRLRWLNYLRPDVRRGNITLEEQLMILELHSRWGN 103 (334)
Q Consensus 24 ~~p~lkKg~WT~EEDe~L~~lV~~~g~~~W~~IA~~l~~~Rt~~qCr~Rw~~~L~p~lkrg~WT~EED~~Ll~lv~~~G~ 103 (334)
-+|.+++|+||+|||++|+++|.+||..+|..||..|+ +|+++||++||.++|+|.+++++||+|||.+|++++.+||+
T Consensus 21 l~p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~~~~G~ 99 (128)
T 1h8a_C 21 LNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGN 99 (128)
T ss_dssp -CTTCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSS-SCCHHHHHHHHHHTTCSSSCCSCCCHHHHHHHHHHHHHHCS
T ss_pred hCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhc-CCcHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHCc
Confidence 46889999999999999999999999878999999998 99999999999999999999999999999999999999999
Q ss_pred ChhHHhhhCCCCCHHHHHHHHHHhhhHH
Q 019911 104 RWSKIAQHLPGRTDNEIKNYWRTRVQKH 131 (334)
Q Consensus 104 ~W~~IAk~lpgRT~~qcrnRW~~~lr~~ 131 (334)
+|+.||++|||||+++||+||+.++++.
T Consensus 100 ~W~~Ia~~l~gRt~~~~k~r~~~~~~~~ 127 (128)
T 1h8a_C 100 RWAEIAKLLPGRTDNAVKNHWNSTMRRK 127 (128)
T ss_dssp CHHHHGGGSTTCCHHHHHHHHHTTTTC-
T ss_pred CHHHHHHHCCCCCHHHHHHHHHHHHhcc
Confidence 9999999999999999999999998864
No 5
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=99.98 E-value=1.1e-32 Score=232.44 Aligned_cols=106 Identities=34% Similarity=0.617 Sum_probs=101.3
Q ss_pred cCCCCCcCCCCHHHHHHHHHHHHHhCCCChHHHHhhhCCccChhhhhhhhhcccCCCCCCCCCCHHHHHHHHHHHHHhCC
Q 019911 24 EDLDLRRGPWTVEEDFKLINYISNHGEGRWNCLARCAGLKRTGKSCRLRWLNYLRPDVRRGNITLEEQLMILELHSRWGN 103 (334)
Q Consensus 24 ~~p~lkKg~WT~EEDe~L~~lV~~~g~~~W~~IA~~l~~~Rt~~qCr~Rw~~~L~p~lkrg~WT~EED~~Ll~lv~~~G~ 103 (334)
.....+||+||+|||++|+++|.+||. +|..||+.|+ +|+++||++||.++|+|.+++++||+|||.+|+++|.+||+
T Consensus 5 ~~~~~kk~~WT~eED~~L~~~v~~~G~-~W~~Ia~~~~-~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~v~~~G~ 82 (126)
T 3osg_A 5 NLKAAKKQKFTPEEDEMLKRAVAQHGS-DWKMIAATFP-NRNARQCRDRWKNYLAPSISHTPWTAEEDALLVQKIQEYGR 82 (126)
T ss_dssp C-CBCSSCCCCHHHHHHHHHHHHHHTT-CHHHHHHTCT-TCCHHHHHHHHHHHTSTTSCCSCCCHHHHHHHHHHHHHHCS
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHhCC-CHHHHHHHcC-CCCHHHHHHHHhhhcccccccccCCHHHHHHHHHHHHHHCc
Confidence 356789999999999999999999998 9999999998 99999999999999999999999999999999999999999
Q ss_pred ChhHHhhhCCCCCHHHHHHHHHHhhhHH
Q 019911 104 RWSKIAQHLPGRTDNEIKNYWRTRVQKH 131 (334)
Q Consensus 104 ~W~~IAk~lpgRT~~qcrnRW~~~lr~~ 131 (334)
+|..||+.|||||+++||+||..++++.
T Consensus 83 ~W~~Ia~~l~gRt~~~~k~rw~~l~~k~ 110 (126)
T 3osg_A 83 QWAIIAKFFPGRTDIHIKNRWVTISNKL 110 (126)
T ss_dssp CHHHHHTTSTTCCHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHhc
Confidence 9999999999999999999999988764
No 6
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=99.97 E-value=2.6e-31 Score=231.88 Aligned_cols=121 Identities=29% Similarity=0.584 Sum_probs=75.9
Q ss_pred CCCcCCCCHHHHHHHHHHHHHhCCCChHHHHhhhCCccChhhhhhhhhcccCCCCCCCCCCHHHHHHHHHHHHHhCC-Ch
Q 019911 27 DLRRGPWTVEEDFKLINYISNHGEGRWNCLARCAGLKRTGKSCRLRWLNYLRPDVRRGNITLEEQLMILELHSRWGN-RW 105 (334)
Q Consensus 27 ~lkKg~WT~EEDe~L~~lV~~~g~~~W~~IA~~l~~~Rt~~qCr~Rw~~~L~p~lkrg~WT~EED~~Ll~lv~~~G~-~W 105 (334)
.++|++||+|||++|+++|.+||.++|..||..|+ +|+++||++||.++|+|.+++++||+|||.+|+++|.+||. +|
T Consensus 3 ~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~v~~~g~~~W 81 (159)
T 1h89_C 3 HLGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLP-NRTDVQCQHRWQKVLNPELIKGPWTKEEDQRVIKLVQKYGPKRW 81 (159)
T ss_dssp -----------------------------------------CHHHHHHTTTCTTCCCSCCCHHHHHHHHHHHHHHCSCCH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcC-CCCHHHHHHHHHHccCCCcCCCCCChHHHHHHHHHHHHhCcccH
Confidence 47899999999999999999999889999999998 99999999999999999999999999999999999999995 79
Q ss_pred hHHhhhCCCCCHHHHHHHHHHhhhHHhhhccCCccchhhhHHH
Q 019911 106 SKIAQHLPGRTDNEIKNYWRTRVQKHAKQLKCDVNSKQFKDTM 148 (334)
Q Consensus 106 ~~IAk~lpgRT~~qcrnRW~~~lr~~~kk~~~~~~~~~~~~~~ 148 (334)
..||++|||||+.|||+||.++|.+.+++..++.+++.+.-..
T Consensus 82 ~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~ 124 (159)
T 1h89_C 82 SVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQA 124 (159)
T ss_dssp HHHHHTSTTCCHHHHHHHHHHTTCTTSCCSCCCHHHHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHHHHhCccccccCCChHHHHHHHHH
Confidence 9999999999999999999999999999999998887665433
No 7
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=99.97 E-value=1.5e-30 Score=227.05 Aligned_cols=107 Identities=44% Similarity=0.855 Sum_probs=102.5
Q ss_pred cCCCCCcCCCCHHHHHHHHHHHHHhCCCChHHHHhhhCCccChhhhhhhhhcccCCCCCCCCCCHHHHHHHHHHHHHhCC
Q 019911 24 EDLDLRRGPWTVEEDFKLINYISNHGEGRWNCLARCAGLKRTGKSCRLRWLNYLRPDVRRGNITLEEQLMILELHSRWGN 103 (334)
Q Consensus 24 ~~p~lkKg~WT~EEDe~L~~lV~~~g~~~W~~IA~~l~~~Rt~~qCr~Rw~~~L~p~lkrg~WT~EED~~Ll~lv~~~G~ 103 (334)
-+|.+++|+||+|||++|+++|.+||..+|..||..|+ +|++.||++||.++|+|.+++++||+|||.+|++++.+||+
T Consensus 52 l~p~~~~~~Wt~eEd~~L~~~v~~~g~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~~~~g~ 130 (159)
T 1h89_C 52 LNPELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGN 130 (159)
T ss_dssp TCTTCCCSCCCHHHHHHHHHHHHHHCSCCHHHHHHTST-TCCHHHHHHHHHHTTCTTSCCSCCCHHHHHHHHHHHHHHCS
T ss_pred cCCCcCCCCCChHHHHHHHHHHHHhCcccHHHHHHHcC-CCCHHHHHHHHHHHhCccccccCCChHHHHHHHHHHHHHCC
Confidence 36789999999999999999999999878999999998 99999999999999999999999999999999999999999
Q ss_pred ChhHHhhhCCCCCHHHHHHHHHHhhhHH
Q 019911 104 RWSKIAQHLPGRTDNEIKNYWRTRVQKH 131 (334)
Q Consensus 104 ~W~~IAk~lpgRT~~qcrnRW~~~lr~~ 131 (334)
+|+.||++|||||+++||+||+.++++.
T Consensus 131 ~W~~Ia~~l~gRt~~~~knr~~~~~r~~ 158 (159)
T 1h89_C 131 RWAEIAKLLPGRTDNAIKNHWNSTMRRK 158 (159)
T ss_dssp CHHHHHTTSTTCCHHHHHHHHHTTTCC-
T ss_pred CHHHHHHHCCCCCHHHHHHHHHHHHhcc
Confidence 9999999999999999999999988864
No 8
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=99.86 E-value=1.4e-22 Score=170.77 Aligned_cols=92 Identities=26% Similarity=0.552 Sum_probs=65.9
Q ss_pred HHhhhCCccChhhhhhhhhcccCCCCCCCCCCHHHHHHHHHHHHHhCC-ChhHHhhhCCCCCHHHHHHHHHHhhhHHhhh
Q 019911 56 LARCAGLKRTGKSCRLRWLNYLRPDVRRGNITLEEQLMILELHSRWGN-RWSKIAQHLPGRTDNEIKNYWRTRVQKHAKQ 134 (334)
Q Consensus 56 IA~~l~~~Rt~~qCr~Rw~~~L~p~lkrg~WT~EED~~Ll~lv~~~G~-~W~~IAk~lpgRT~~qcrnRW~~~lr~~~kk 134 (334)
||+.|+ +|+++||++||.++|+|.+++|+||+|||.+|+++|++||. +|..||+.|+|||+.||++||.++|.+.+++
T Consensus 1 Ia~~~~-~Rt~~qC~~Rw~~~l~p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~ 79 (128)
T 1h8a_C 1 MEAVIK-NRTDVQCQHRWQKVLNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHNHLNPEVKK 79 (128)
T ss_dssp ----------------------CTTCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSSSCCHHHHHHHHHHTTCSSSCC
T ss_pred CccccC-CCCHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhcCCcHHHHHHHHHHhccccccc
Confidence 788898 99999999999999999999999999999999999999995 7999999999999999999999999999999
Q ss_pred ccCCccchhhhHHH
Q 019911 135 LKCDVNSKQFKDTM 148 (334)
Q Consensus 135 ~~~~~~~~~~~~~~ 148 (334)
..++.+|+.+....
T Consensus 80 ~~WT~eEd~~L~~~ 93 (128)
T 1h8a_C 80 TSWTEEEDRIIYQA 93 (128)
T ss_dssp SCCCHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHH
Confidence 99998887665433
No 9
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.85 E-value=2.7e-22 Score=152.56 Aligned_cols=66 Identities=21% Similarity=0.510 Sum_probs=63.7
Q ss_pred CCCCCcCCCCHHHHHHHHHHHHHhCCCChHHHHhhhCCccChhhhhhhhhcccCCCCCCCCCCHHHH
Q 019911 25 DLDLRRGPWTVEEDFKLINYISNHGEGRWNCLARCAGLKRTGKSCRLRWLNYLRPDVRRGNITLEEQ 91 (334)
Q Consensus 25 ~p~lkKg~WT~EEDe~L~~lV~~~g~~~W~~IA~~l~~~Rt~~qCr~Rw~~~L~p~lkrg~WT~EED 91 (334)
.|.+++|+||+|||++|+++|.+||..+|..||..|+ +|+++||++||.++|+|.+++++||+|||
T Consensus 4 ~~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~L~p~i~~~~wt~eEd 69 (70)
T 2dim_A 4 GSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLH-RKSAKQCKARWYEWLDPSIKKTEWSGPSS 69 (70)
T ss_dssp CSCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHST-TCCHHHHHHHHHHTSCSSSCCCCSCCSCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhc-CCCHHHHHHHHHHHcCCcccCCCCChHhc
Confidence 4789999999999999999999999779999999998 99999999999999999999999999997
No 10
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=99.76 E-value=9.1e-19 Score=160.96 Aligned_cols=105 Identities=17% Similarity=0.309 Sum_probs=92.7
Q ss_pred CCCCcCCCCHHHHHHHHHHHHHhCCCC-----hHHHHhhhCCccChhhhhhhhhcccCCCCC------------------
Q 019911 26 LDLRRGPWTVEEDFKLINYISNHGEGR-----WNCLARCAGLKRTGKSCRLRWLNYLRPDVR------------------ 82 (334)
Q Consensus 26 p~lkKg~WT~EEDe~L~~lV~~~g~~~-----W~~IA~~l~~~Rt~~qCr~Rw~~~L~p~lk------------------ 82 (334)
+.++|++||+|||++|+++|.++|..+ |.+||++|+ |||+.|||.||..+|.+.+.
T Consensus 4 ~~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~Lp-GRT~nsIRnRw~~~L~~~ln~vy~~ded~~Li~d~~Gn 82 (246)
T 1ign_A 4 PSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVP-NHTGNSIRHRFRVYLSKRLEYVYEVDKFGKLVRDDDGN 82 (246)
T ss_dssp ----CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTST-TSCHHHHHHHHHHTTGGGCCCEECBCTTSCBCBCTTSC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcC-CCCHHHHHHHHHHHHhhhcccccccCcchhhhhccCCC
Confidence 568899999999999999999998743 999999998 99999999999999999986
Q ss_pred -----------CCCCCHHHHHHHHHHHHH-h-------------------------------------------------
Q 019911 83 -----------RGNITLEEQLMILELHSR-W------------------------------------------------- 101 (334)
Q Consensus 83 -----------rg~WT~EED~~Ll~lv~~-~------------------------------------------------- 101 (334)
+..||.|||-.|+..+++ +
T Consensus 83 ~ikis~lp~siK~rftaeeDy~L~~~i~~~f~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~ 162 (246)
T 1ign_A 83 LIKTKVLPPSIKRKFSADEDYTLAIAVKKQFYRDLFQIDPDTGRSLITDEDTPTAIARRNMTMDPNHVPGSEPNFAAYRT 162 (246)
T ss_dssp BCEESSCCCCSCCCCCHHHHHHHHHHHHHHHHHHHHCBCSSSCCBCC-------------------------------CC
T ss_pred ceeeeccCccccCccchhccHHHHHHHHHHHhhhhhhcCccccccccccccchhhhhhhhcccCccccccCCcchhhhcc
Confidence 789999999999999987 1
Q ss_pred ----CC----ChhHHhhhCCCCCHHHHHHHHHHhhhHH
Q 019911 102 ----GN----RWSKIAQHLPGRTDNEIKNYWRTRVQKH 131 (334)
Q Consensus 102 ----G~----~W~~IAk~lpgRT~~qcrnRW~~~lr~~ 131 (334)
|. .|..||+.+|+||..++|+||+..|+..
T Consensus 163 ~~~~gp~~~~~fk~ia~~~P~HT~~SWRdRyrKfl~~~ 200 (246)
T 1ign_A 163 QSRRGPIAREFFKHFAEEHAAHTENAWRDRFRKFLLAY 200 (246)
T ss_dssp CCCCCCCCTTHHHHHHHHTTTSCHHHHHHHHHHTHHHH
T ss_pred ccccCcchHHHHHHHHHHCCCCChhhHHHHHHHHHhhc
Confidence 11 6999999999999999999999988764
No 11
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=99.74 E-value=1.6e-18 Score=145.08 Aligned_cols=86 Identities=27% Similarity=0.405 Sum_probs=80.0
Q ss_pred cccCCCCCcCCCCHHHHHHHHHHHHHhCCCChHHHHhhhC---CccChhhhhhhhhcccC-----CCCCCC-CCCHHHHH
Q 019911 22 SEEDLDLRRGPWTVEEDFKLINYISNHGEGRWNCLARCAG---LKRTGKSCRLRWLNYLR-----PDVRRG-NITLEEQL 92 (334)
Q Consensus 22 s~~~p~lkKg~WT~EEDe~L~~lV~~~g~~~W~~IA~~l~---~~Rt~~qCr~Rw~~~L~-----p~lkrg-~WT~EED~ 92 (334)
+...+..++++||+|||+.|+++|++||.++|..|++.++ .+||..+|++||+++|+ |.+++| +|++||+.
T Consensus 9 ~~~~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~~~~~p~~krg~~~p~e~~~ 88 (121)
T 2juh_A 9 SELSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLD 88 (121)
T ss_dssp CCCCCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHHHHTCSTTCCCSCCCHHHHH
T ss_pred ccccCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhhhccCCcccCCCCCCHHHHH
Confidence 4566889999999999999999999999999999999862 38999999999999998 999999 99999999
Q ss_pred HHHHHHHHhCCChhH
Q 019911 93 MILELHSRWGNRWSK 107 (334)
Q Consensus 93 ~Ll~lv~~~G~~W~~ 107 (334)
+|++++..+|++|.+
T Consensus 89 rv~~~h~~~gn~~~~ 103 (121)
T 2juh_A 89 RVLAAHAYWSQQQGK 103 (121)
T ss_dssp HHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHccchhc
Confidence 999999999999986
No 12
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=99.71 E-value=4.5e-18 Score=130.73 Aligned_cols=58 Identities=28% Similarity=0.366 Sum_probs=47.2
Q ss_pred hhhhhcccCCCCCCCCCCHHHHHHHHHHHHHhCCChhHHhhhCCCCCHHHHHHHHHHhh
Q 019911 70 RLRWLNYLRPDVRRGNITLEEQLMILELHSRWGNRWSKIAQHLPGRTDNEIKNYWRTRV 128 (334)
Q Consensus 70 r~Rw~~~L~p~lkrg~WT~EED~~Ll~lv~~~G~~W~~IAk~lpgRT~~qcrnRW~~~l 128 (334)
--||.++|+|.+++++||+|||++|++++++||++|+.||+.| |||+++||+||+.+.
T Consensus 10 ~~~~~~~ldP~i~k~~wT~EED~~L~~l~~~~G~kW~~IA~~l-gRt~~q~knRw~~L~ 67 (73)
T 2llk_A 10 GRENLYFQGDRNHVGKYTPEEIEKLKELRIKHGNDWATIGAAL-GRSASSVKDRCRLMK 67 (73)
T ss_dssp ---------CCCCCCSSCHHHHHHHHHHHHHHSSCHHHHHHHH-TSCHHHHHHHHHHCS
T ss_pred CcceeeecCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHh-CCCHHHHHHHHHHHH
Confidence 3589999999999999999999999999999999999999999 999999999998643
No 13
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=99.71 E-value=1.6e-17 Score=139.16 Aligned_cols=85 Identities=25% Similarity=0.336 Sum_probs=76.2
Q ss_pred CccccCCCCCcCCCCHHHHHHHHHHHHHhCCCChHHHHhhhC---CccChhhhhhhhhccc-----CCCCCCCCCCHHH-
Q 019911 20 TISEEDLDLRRGPWTVEEDFKLINYISNHGEGRWNCLARCAG---LKRTGKSCRLRWLNYL-----RPDVRRGNITLEE- 90 (334)
Q Consensus 20 ~~s~~~p~lkKg~WT~EEDe~L~~lV~~~g~~~W~~IA~~l~---~~Rt~~qCr~Rw~~~L-----~p~lkrg~WT~EE- 90 (334)
.........++++||+|||+.|+++|++||.++|..|++.+. .+||..+|++||++++ +|.++++.|++||
T Consensus 21 ~~~~~~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~~~~p~~kr~~~~p~e~ 100 (122)
T 2roh_A 21 KRPDFGQRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTASIAPQQRRGAPVPQEL 100 (122)
T ss_dssp CCCCCCCCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHHHSCTTTCCCSSCCHHH
T ss_pred CCcCcCCCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCCccccCCCCCCHHH
Confidence 344456678899999999999999999999999999999751 3899999999999999 8999999999999
Q ss_pred HHHHHHHHHHhCCC
Q 019911 91 QLMILELHSRWGNR 104 (334)
Q Consensus 91 D~~Ll~lv~~~G~~ 104 (334)
+.+|++++..||++
T Consensus 101 ~~~v~~~h~~~g~~ 114 (122)
T 2roh_A 101 LDRVLAAQAYWSVD 114 (122)
T ss_dssp HHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHhhH
Confidence 89999999999974
No 14
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.71 E-value=9.9e-18 Score=123.52 Aligned_cols=57 Identities=30% Similarity=0.519 Sum_probs=54.3
Q ss_pred CCCCCcCCCCHHHHHHHHHHHHHhCCCChHHHHhhhCCccChhhhhhhhhcccCCCCC
Q 019911 25 DLDLRRGPWTVEEDFKLINYISNHGEGRWNCLARCAGLKRTGKSCRLRWLNYLRPDVR 82 (334)
Q Consensus 25 ~p~lkKg~WT~EEDe~L~~lV~~~g~~~W~~IA~~l~~~Rt~~qCr~Rw~~~L~p~lk 82 (334)
.|.++|++||+|||++|+++|.+||..+|..||+.|+ +|++.||++||.++|+|.++
T Consensus 3 ~p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~l~p~i~ 59 (60)
T 2d9a_A 3 SGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFP-NRTDQQCQYRWLRVLSGPSS 59 (60)
T ss_dssp SCCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCS-SSCHHHHHHHHHHTSCSSSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcc-CCCHHHHHHHHHHHcCCccC
Confidence 5789999999999999999999999779999999998 99999999999999999875
No 15
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=2.1e-17 Score=124.08 Aligned_cols=61 Identities=20% Similarity=0.238 Sum_probs=57.8
Q ss_pred ccCCCCCCCCCCHHHHHHHHHHHHHhCCChhHHhhhCCCCCHHHHHHHHHHhhhHHhhhccC
Q 019911 76 YLRPDVRRGNITLEEQLMILELHSRWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKHAKQLKC 137 (334)
Q Consensus 76 ~L~p~lkrg~WT~EED~~Ll~lv~~~G~~W~~IAk~lpgRT~~qcrnRW~~~lr~~~kk~~~ 137 (334)
+|+|.+++++||+|||.+|+++|++||.+|..||+ ++|||++|||+||.++|++.+++...
T Consensus 2 ~L~P~~~k~~WT~eED~~L~~~~~~~g~~W~~Ia~-~~gRt~~qcr~Rw~~~l~~~~~~~~~ 62 (66)
T 2din_A 2 SSGSSGKKTEWSREEEEKLLHLAKLMPTQWRTIAP-IIGRTAAQCLEHYEFLLDKAAQRDSG 62 (66)
T ss_dssp CCSSSSSCCCCCHHHHHHHHHHHHHCTTCHHHHHH-HHSSCHHHHHHHHHHHHHHHHHSSSC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHcCCCHHHHhc-ccCcCHHHHHHHHHHHhChHhcCCCC
Confidence 79999999999999999999999999999999999 88999999999999999999887543
No 16
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.69 E-value=1.7e-17 Score=118.82 Aligned_cols=52 Identities=46% Similarity=0.928 Sum_probs=49.7
Q ss_pred CCcCCCCHHHHHHHHHHHHHhCCCChHHHHhhhCCccChhhhhhhhhcccCCC
Q 019911 28 LRRGPWTVEEDFKLINYISNHGEGRWNCLARCAGLKRTGKSCRLRWLNYLRPD 80 (334)
Q Consensus 28 lkKg~WT~EEDe~L~~lV~~~g~~~W~~IA~~l~~~Rt~~qCr~Rw~~~L~p~ 80 (334)
++||+||+|||++|+++|.+||..+|..||+.|+ +|+++||++||.++|+|+
T Consensus 1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~L~P~ 52 (52)
T 1gvd_A 1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPE 52 (52)
T ss_dssp CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTST-TCCHHHHHHHHHHTTSCC
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcC-CCCHHHHHHHHHHHcCcC
Confidence 6899999999999999999999878999999998 999999999999999984
No 17
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.69 E-value=2.3e-17 Score=125.23 Aligned_cols=65 Identities=20% Similarity=0.323 Sum_probs=61.4
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhC-CChhHHhhhCCCCCHHHHHHHHHHhhhHHhhhccCCccch
Q 019911 78 RPDVRRGNITLEEQLMILELHSRWG-NRWSKIAQHLPGRTDNEIKNYWRTRVQKHAKQLKCDVNSK 142 (334)
Q Consensus 78 ~p~lkrg~WT~EED~~Ll~lv~~~G-~~W~~IAk~lpgRT~~qcrnRW~~~lr~~~kk~~~~~~~~ 142 (334)
.|.+++++||+|||.+|+++|.+|| ++|..||++|++||++|||+||+++|++.+++..++.+++
T Consensus 4 ~~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~~Rt~~qcr~Rw~~~L~p~i~~~~wt~eEd 69 (70)
T 2dim_A 4 GSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKKTEWSGPSS 69 (70)
T ss_dssp CSCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHSTTCCHHHHHHHHHHTSCSSSCCCCSCCSCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhcCCCHHHHHHHHHHHcCCcccCCCCChHhc
Confidence 4678999999999999999999999 8999999999999999999999999999999999888764
No 18
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.68 E-value=2.5e-17 Score=117.89 Aligned_cols=52 Identities=35% Similarity=0.707 Sum_probs=48.4
Q ss_pred CCcCCCCHHHHHHHHHHHHHhCCCChHHHHhhhCCccChhhhhhhhhcccCCC
Q 019911 28 LRRGPWTVEEDFKLINYISNHGEGRWNCLARCAGLKRTGKSCRLRWLNYLRPD 80 (334)
Q Consensus 28 lkKg~WT~EEDe~L~~lV~~~g~~~W~~IA~~l~~~Rt~~qCr~Rw~~~L~p~ 80 (334)
++|++||+|||++|+++|.+||.++|..||+.|+ +|++.||++||.++|+|+
T Consensus 1 i~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~L~P~ 52 (52)
T 1guu_A 1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLP-NRTDVQCQHRWQKVLNPE 52 (52)
T ss_dssp --CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTST-TCCHHHHHHHHHHHHSCC
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcC-CCCHHHHHHHHHHHcCcC
Confidence 5799999999999999999999889999999998 999999999999999984
No 19
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.67 E-value=4.7e-17 Score=123.27 Aligned_cols=65 Identities=23% Similarity=0.367 Sum_probs=59.8
Q ss_pred ccCCCCCcCCCCHHHHHHHHHHHHHhCCCChHHHHhhhCC-ccChhhhhhhhhcccCCCCCCCCCC
Q 019911 23 EEDLDLRRGPWTVEEDFKLINYISNHGEGRWNCLARCAGL-KRTGKSCRLRWLNYLRPDVRRGNIT 87 (334)
Q Consensus 23 ~~~p~lkKg~WT~EEDe~L~~lV~~~g~~~W~~IA~~l~~-~Rt~~qCr~Rw~~~L~p~lkrg~WT 87 (334)
...+..++++||+|||++|+++|.+||.++|..||..|++ +|++.||++||.++|+|.+.++..+
T Consensus 3 ~~~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p~i~k~~~~ 68 (69)
T 1ity_A 3 EKHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLISSDSE 68 (69)
T ss_dssp CTTCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHHTSCCCCCCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcCCCCCCCCCC
Confidence 4567889999999999999999999998899999999975 8999999999999999999988653
No 20
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.67 E-value=7.1e-17 Score=123.33 Aligned_cols=58 Identities=24% Similarity=0.353 Sum_probs=55.7
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHHHhCCChhHHhhhCCCCCHHHHHHHHHHhhhHHhhh
Q 019911 77 LRPDVRRGNITLEEQLMILELHSRWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKHAKQ 134 (334)
Q Consensus 77 L~p~lkrg~WT~EED~~Ll~lv~~~G~~W~~IAk~lpgRT~~qcrnRW~~~lr~~~kk 134 (334)
++|.+++++||+|||++|+++|.+||.+|..||++|+|||++|||+||..++++.+++
T Consensus 3 ~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~Ia~~~~~Rt~~q~k~r~~~~l~~~~~~ 60 (72)
T 2cu7_A 3 SGSSGYSVKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVKC 60 (72)
T ss_dssp CCCSSCCCCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHHHHHHSCS
T ss_pred CCCCcCCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHHHHhc
Confidence 5789999999999999999999999999999999999999999999999999998776
No 21
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.66 E-value=7e-17 Score=118.92 Aligned_cols=56 Identities=23% Similarity=0.413 Sum_probs=52.5
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhC-CChhHHhhhCCCCCHHHHHHHHHHhhhHHhh
Q 019911 78 RPDVRRGNITLEEQLMILELHSRWG-NRWSKIAQHLPGRTDNEIKNYWRTRVQKHAK 133 (334)
Q Consensus 78 ~p~lkrg~WT~EED~~Ll~lv~~~G-~~W~~IAk~lpgRT~~qcrnRW~~~lr~~~k 133 (334)
+|.+++++||+|||++|+++|.+|| ++|..||++|++||+.|||+||.++|++.++
T Consensus 3 ~p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~i~ 59 (60)
T 2d9a_A 3 SGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRVLSGPSS 59 (60)
T ss_dssp SCCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCSSSCHHHHHHHHHHTSCSSSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHccCCCHHHHHHHHHHHcCCccC
Confidence 5788999999999999999999999 6999999999999999999999999988653
No 22
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.63 E-value=2.6e-16 Score=112.54 Aligned_cols=50 Identities=28% Similarity=0.470 Sum_probs=46.5
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCC-ChhHHhhhCCCCCHHHHHHHHHHhhhH
Q 019911 81 VRRGNITLEEQLMILELHSRWGN-RWSKIAQHLPGRTDNEIKNYWRTRVQK 130 (334)
Q Consensus 81 lkrg~WT~EED~~Ll~lv~~~G~-~W~~IAk~lpgRT~~qcrnRW~~~lr~ 130 (334)
+++++||+|||.+|+++|.+||. +|..||++|+|||+.|||+||.++|++
T Consensus 1 i~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P 51 (52)
T 1guu_A 1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNP 51 (52)
T ss_dssp --CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHHSC
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHHcCc
Confidence 47899999999999999999997 999999999999999999999999875
No 23
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.63 E-value=3.5e-16 Score=112.00 Aligned_cols=50 Identities=32% Similarity=0.675 Sum_probs=47.4
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCC-ChhHHhhhCCCCCHHHHHHHHHHhhhH
Q 019911 81 VRRGNITLEEQLMILELHSRWGN-RWSKIAQHLPGRTDNEIKNYWRTRVQK 130 (334)
Q Consensus 81 lkrg~WT~EED~~Ll~lv~~~G~-~W~~IAk~lpgRT~~qcrnRW~~~lr~ 130 (334)
+++++||+|||.+|+++|.+||. +|..||+.|+|||++|||+||.++|++
T Consensus 1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P 51 (52)
T 1gvd_A 1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNP 51 (52)
T ss_dssp CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTSC
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcCCCCHHHHHHHHHHHcCc
Confidence 57899999999999999999996 699999999999999999999999875
No 24
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.62 E-value=3.4e-16 Score=115.53 Aligned_cols=54 Identities=20% Similarity=0.478 Sum_probs=51.2
Q ss_pred CCCCcCCCCHHHHHHHHHHHHHhCCCChHHHHhhhCCccChhhhhhhhhcccCCC
Q 019911 26 LDLRRGPWTVEEDFKLINYISNHGEGRWNCLARCAGLKRTGKSCRLRWLNYLRPD 80 (334)
Q Consensus 26 p~lkKg~WT~EEDe~L~~lV~~~g~~~W~~IA~~l~~~Rt~~qCr~Rw~~~L~p~ 80 (334)
+.+++++||+|||++|+++|++||.++|.+||+.|+ +|+++||++||.++|.+.
T Consensus 4 ~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~-~Rt~~qcr~r~~~~l~~~ 57 (60)
T 1x41_A 4 GSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMC-TKTKEECEKHYMKYFSGP 57 (60)
T ss_dssp CCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHT-TSCHHHHHHHHHHHTTCS
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhC-CCCHHHHHHHHHHHccCC
Confidence 579999999999999999999999779999999998 999999999999999874
No 25
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.62 E-value=2.3e-16 Score=118.26 Aligned_cols=56 Identities=25% Similarity=0.436 Sum_probs=49.8
Q ss_pred CCCcCCCCHHHHHHHHHHHHHhCCCChHHHHhhhC-CccChhhhhhhhhcccCCCCC
Q 019911 27 DLRRGPWTVEEDFKLINYISNHGEGRWNCLARCAG-LKRTGKSCRLRWLNYLRPDVR 82 (334)
Q Consensus 27 ~lkKg~WT~EEDe~L~~lV~~~g~~~W~~IA~~l~-~~Rt~~qCr~Rw~~~L~p~lk 82 (334)
..+|++||+|||++|+++|++||.++|..||+.++ .+|++.||++||++++++.++
T Consensus 8 ~~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~glN 64 (64)
T 3sjm_A 8 ITKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGMN 64 (64)
T ss_dssp --CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTTCC
T ss_pred CCCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhccCCC
Confidence 35789999999999999999999889999999864 389999999999999998764
No 26
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.61 E-value=8.3e-16 Score=116.37 Aligned_cols=61 Identities=25% Similarity=0.312 Sum_probs=55.4
Q ss_pred ccCCCCCCCCCCHHHHHHHHHHHHHhC-CChhHHhhhCC--CCCHHHHHHHHHHhhhHHhhhcc
Q 019911 76 YLRPDVRRGNITLEEQLMILELHSRWG-NRWSKIAQHLP--GRTDNEIKNYWRTRVQKHAKQLK 136 (334)
Q Consensus 76 ~L~p~lkrg~WT~EED~~Ll~lv~~~G-~~W~~IAk~lp--gRT~~qcrnRW~~~lr~~~kk~~ 136 (334)
...+..++++||+|||.+|+++|.+|| ++|..||++|+ |||+.|||+||+++|++.+.+..
T Consensus 3 ~~~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p~i~k~~ 66 (69)
T 1ity_A 3 EKHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLISSD 66 (69)
T ss_dssp CTTCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHHTSCCCCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcCCCCCCCC
Confidence 345677899999999999999999999 79999999999 99999999999999999876643
No 27
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.59 E-value=2.5e-16 Score=118.18 Aligned_cols=59 Identities=20% Similarity=0.333 Sum_probs=54.0
Q ss_pred cCCCCCcCCCCHHHHHHHHHHHHHhCCCChHHHHhhhCCccChhhhhhhhhcccCCCCCCCC
Q 019911 24 EDLDLRRGPWTVEEDFKLINYISNHGEGRWNCLARCAGLKRTGKSCRLRWLNYLRPDVRRGN 85 (334)
Q Consensus 24 ~~p~lkKg~WT~EEDe~L~~lV~~~g~~~W~~IA~~l~~~Rt~~qCr~Rw~~~L~p~lkrg~ 85 (334)
-+|.++|++||+|||++|+++|+++|. +|.+||+ ++ +|+++||++||.++|+|.++++.
T Consensus 3 L~P~~~k~~WT~eED~~L~~~~~~~g~-~W~~Ia~-~~-gRt~~qcr~Rw~~~l~~~~~~~~ 61 (66)
T 2din_A 3 SGSSGKKTEWSREEEEKLLHLAKLMPT-QWRTIAP-II-GRTAAQCLEHYEFLLDKAAQRDS 61 (66)
T ss_dssp CSSSSSCCCCCHHHHHHHHHHHHHCTT-CHHHHHH-HH-SSCHHHHHHHHHHHHHHHHHSSS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHcCC-CHHHHhc-cc-CcCHHHHHHHHHHHhChHhcCCC
Confidence 368999999999999999999999998 9999999 65 79999999999999999877653
No 28
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.59 E-value=7.3e-16 Score=118.32 Aligned_cols=60 Identities=27% Similarity=0.319 Sum_probs=56.1
Q ss_pred CCCCCcCCCCHHHHHHHHHHHHHhCC-----CChHHHHhhhCCccChhhhhhhhhcccCCCCCCCC
Q 019911 25 DLDLRRGPWTVEEDFKLINYISNHGE-----GRWNCLARCAGLKRTGKSCRLRWLNYLRPDVRRGN 85 (334)
Q Consensus 25 ~p~lkKg~WT~EEDe~L~~lV~~~g~-----~~W~~IA~~l~~~Rt~~qCr~Rw~~~L~p~lkrg~ 85 (334)
+|.+++++||+|||++|+++|.+||. .+|.+||++|+ +|+..||+.||+++|.+.++.|.
T Consensus 3 ~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~-~Rt~~qcr~r~~~~l~~~~k~g~ 67 (75)
T 2yum_A 3 SGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELG-NRTAKQVASQVQKYFIKLTKAGI 67 (75)
T ss_dssp CCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHS-SSCHHHHHHHHHHHHGGGSTTCS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhcCC
Confidence 58899999999999999999999995 58999999998 99999999999999999887764
No 29
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.59 E-value=1.8e-15 Score=108.87 Aligned_cols=49 Identities=31% Similarity=0.466 Sum_probs=46.5
Q ss_pred CCCCCCHHHHHHHHHHHHHhC-CChhHHhhhCC--CCCHHHHHHHHHHhhhH
Q 019911 82 RRGNITLEEQLMILELHSRWG-NRWSKIAQHLP--GRTDNEIKNYWRTRVQK 130 (334)
Q Consensus 82 krg~WT~EED~~Ll~lv~~~G-~~W~~IAk~lp--gRT~~qcrnRW~~~lr~ 130 (334)
++++||+|||.+|+++|.+|| ++|..||+.|+ +||+.|||+||.++++.
T Consensus 1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k~ 52 (53)
T 1w0t_A 1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKL 52 (53)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHTC
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHHcc
Confidence 578999999999999999999 79999999999 99999999999999874
No 30
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.58 E-value=1.6e-15 Score=111.31 Aligned_cols=52 Identities=27% Similarity=0.469 Sum_probs=48.0
Q ss_pred CCCCcCCCCHHHHHHHHHHHHHhCCCChHHHHhhhCCccChhhhhhhhhccc
Q 019911 26 LDLRRGPWTVEEDFKLINYISNHGEGRWNCLARCAGLKRTGKSCRLRWLNYL 77 (334)
Q Consensus 26 p~lkKg~WT~EEDe~L~~lV~~~g~~~W~~IA~~l~~~Rt~~qCr~Rw~~~L 77 (334)
..+.+++||+|||++|+++|++||.++|.+||+.|+.+|+++||++||.+++
T Consensus 5 ~p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~ 56 (58)
T 2elk_A 5 SSGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTY 56 (58)
T ss_dssp CCSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence 4477999999999999999999997799999999986899999999999875
No 31
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.57 E-value=2.7e-15 Score=110.66 Aligned_cols=53 Identities=17% Similarity=0.290 Sum_probs=49.5
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhC-CChhHHhhhCCCCCHHHHHHHHHHhhhH
Q 019911 78 RPDVRRGNITLEEQLMILELHSRWG-NRWSKIAQHLPGRTDNEIKNYWRTRVQK 130 (334)
Q Consensus 78 ~p~lkrg~WT~EED~~Ll~lv~~~G-~~W~~IAk~lpgRT~~qcrnRW~~~lr~ 130 (334)
.+.+.+++||+|||.+|+++|++|| ++|..||++|++||+.|||+||.++|.+
T Consensus 3 s~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~r~~~~l~~ 56 (60)
T 1x41_A 3 SGSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKYFSG 56 (60)
T ss_dssp CCCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHHTTC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhCCCCHHHHHHHHHHHccC
Confidence 3578899999999999999999999 7999999999999999999999998764
No 32
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.56 E-value=2e-15 Score=108.60 Aligned_cols=50 Identities=28% Similarity=0.486 Sum_probs=46.7
Q ss_pred CcCCCCHHHHHHHHHHHHHhCCCChHHHHhhhCC-ccChhhhhhhhhcccC
Q 019911 29 RRGPWTVEEDFKLINYISNHGEGRWNCLARCAGL-KRTGKSCRLRWLNYLR 78 (334)
Q Consensus 29 kKg~WT~EEDe~L~~lV~~~g~~~W~~IA~~l~~-~Rt~~qCr~Rw~~~L~ 78 (334)
+|++||+|||++|+++|.+||.++|..||..|++ +|++.||++||.+++.
T Consensus 1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k 51 (53)
T 1w0t_A 1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK 51 (53)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHHc
Confidence 5899999999999999999998899999999975 6999999999999875
No 33
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.56 E-value=2e-15 Score=115.28 Aligned_cols=58 Identities=21% Similarity=0.328 Sum_probs=54.4
Q ss_pred cCCCCCcCCCCHHHHHHHHHHHHHhCCCChHHHHhhhCCccChhhhhhhhhcccCCCCCC
Q 019911 24 EDLDLRRGPWTVEEDFKLINYISNHGEGRWNCLARCAGLKRTGKSCRLRWLNYLRPDVRR 83 (334)
Q Consensus 24 ~~p~lkKg~WT~EEDe~L~~lV~~~g~~~W~~IA~~l~~~Rt~~qCr~Rw~~~L~p~lkr 83 (334)
..|.+++++||+|||++|+++|.+||. +|..||+.|+ +|++.||+.||.++|.+.++.
T Consensus 3 ~~p~~~~~~WT~eEd~~l~~~~~~~G~-~W~~Ia~~~~-~Rt~~q~k~r~~~~l~~~~~~ 60 (72)
T 2cu7_A 3 SGSSGYSVKWTIEEKELFEQGLAKFGR-RWTKISKLIG-SRTVLQVKSYARQYFKNKVKC 60 (72)
T ss_dssp CCCSSCCCCCCHHHHHHHHHHHHHTCS-CHHHHHHHHS-SSCHHHHHHHHHHHHHHHSCS
T ss_pred CCCCcCCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHcC-CCCHHHHHHHHHHHHHHHHhc
Confidence 468899999999999999999999998 9999999998 999999999999999887665
No 34
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.56 E-value=4.2e-15 Score=111.32 Aligned_cols=53 Identities=26% Similarity=0.458 Sum_probs=47.3
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhC-CChhHHhhhCC--CCCHHHHHHHHHHhhhHHh
Q 019911 80 DVRRGNITLEEQLMILELHSRWG-NRWSKIAQHLP--GRTDNEIKNYWRTRVQKHA 132 (334)
Q Consensus 80 ~lkrg~WT~EED~~Ll~lv~~~G-~~W~~IAk~lp--gRT~~qcrnRW~~~lr~~~ 132 (334)
..+|++||+|||++|+++|.+|| .+|..||+.++ +||+.|||+||++++++.+
T Consensus 8 ~~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~gl 63 (64)
T 3sjm_A 8 ITKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGM 63 (64)
T ss_dssp --CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhccCC
Confidence 35789999999999999999999 68999999865 9999999999999998754
No 35
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.55 E-value=4.1e-15 Score=114.15 Aligned_cols=59 Identities=25% Similarity=0.269 Sum_probs=54.4
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhC------CChhHHhhhCCCCCHHHHHHHHHHhhhHHhhhcc
Q 019911 78 RPDVRRGNITLEEQLMILELHSRWG------NRWSKIAQHLPGRTDNEIKNYWRTRVQKHAKQLK 136 (334)
Q Consensus 78 ~p~lkrg~WT~EED~~Ll~lv~~~G------~~W~~IAk~lpgRT~~qcrnRW~~~lr~~~kk~~ 136 (334)
+|.+++++||+|||.+|+++|.+|| .+|..||++|++||+.|||+||.++|++.++.+.
T Consensus 3 ~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~Rt~~qcr~r~~~~l~~~~k~g~ 67 (75)
T 2yum_A 3 SGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQKYFIKLTKAGI 67 (75)
T ss_dssp CCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSSSCHHHHHHHHHHHHGGGSTTCS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCC
Confidence 5788999999999999999999999 6899999999999999999999999998776543
No 36
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.52 E-value=1.7e-14 Score=105.85 Aligned_cols=50 Identities=20% Similarity=0.377 Sum_probs=46.3
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhC-CChhHHhhhCC-CCCHHHHHHHHHHhh
Q 019911 79 PDVRRGNITLEEQLMILELHSRWG-NRWSKIAQHLP-GRTDNEIKNYWRTRV 128 (334)
Q Consensus 79 p~lkrg~WT~EED~~Ll~lv~~~G-~~W~~IAk~lp-gRT~~qcrnRW~~~l 128 (334)
..+.+++||+|||.+|+++|++|| ++|..||++|+ +||+.|||+||.+++
T Consensus 5 ~p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~ 56 (58)
T 2elk_A 5 SSGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTY 56 (58)
T ss_dssp CCSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence 346688999999999999999999 89999999999 999999999998764
No 37
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=99.51 E-value=1.6e-14 Score=121.24 Aligned_cols=68 Identities=16% Similarity=0.359 Sum_probs=63.6
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCChhHHhhhCCCCCHHHHHHHHHHhhhHHhhhccCCccchhhh
Q 019911 78 RPDVRRGNITLEEQLMILELHSRWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKHAKQLKCDVNSKQFK 145 (334)
Q Consensus 78 ~p~lkrg~WT~EED~~Ll~lv~~~G~~W~~IAk~lpgRT~~qcrnRW~~~lr~~~kk~~~~~~~~~~~ 145 (334)
.+..++|+||+|||++|+++|.+||.+|..||+.|+||++.||+.||.++|.+.+++..++.+|+...
T Consensus 6 ~~~~kk~~WT~eED~~L~~~v~~~G~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L 73 (126)
T 3osg_A 6 LKAAKKQKFTPEEDEMLKRAVAQHGSDWKMIAATFPNRNARQCRDRWKNYLAPSISHTPWTAEEDALL 73 (126)
T ss_dssp -CBCSSCCCCHHHHHHHHHHHHHHTTCHHHHHHTCTTCCHHHHHHHHHHHTSTTSCCSCCCHHHHHHH
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHhhhcccccccccCCHHHHHHH
Confidence 45788999999999999999999999999999999999999999999999999999999999888664
No 38
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=99.50 E-value=1.8e-14 Score=116.93 Aligned_cols=69 Identities=25% Similarity=0.502 Sum_probs=62.8
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCC-ChhHHhhhCCCCCHHHHHHHHHHhhhHHhhhccCCccchhhhHHH
Q 019911 80 DVRRGNITLEEQLMILELHSRWGN-RWSKIAQHLPGRTDNEIKNYWRTRVQKHAKQLKCDVNSKQFKDTM 148 (334)
Q Consensus 80 ~lkrg~WT~EED~~Ll~lv~~~G~-~W~~IAk~lpgRT~~qcrnRW~~~lr~~~kk~~~~~~~~~~~~~~ 148 (334)
++++|+||+|||.+|+++|++||. +|..||+.|+|||+.||+.||.++|.+.+++..++.+++...-..
T Consensus 1 ~l~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~ 70 (105)
T 1gv2_A 1 ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQA 70 (105)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTCCCCCCCCCCHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhcCCCHHHHHHHHHhccCCcccccCCCHHHHHHHHHH
Confidence 478999999999999999999995 799999999999999999999999999999999998887665433
No 39
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=99.48 E-value=2.8e-14 Score=116.72 Aligned_cols=82 Identities=29% Similarity=0.498 Sum_probs=68.9
Q ss_pred ccccCCCCCcCCCCHHHHHHHHHHHHHhCCCChHHHHhhhC---CccChhhhhhhhhccc-----CCCCCCCCCCHHHHH
Q 019911 21 ISEEDLDLRRGPWTVEEDFKLINYISNHGEGRWNCLARCAG---LKRTGKSCRLRWLNYL-----RPDVRRGNITLEEQL 92 (334)
Q Consensus 21 ~s~~~p~lkKg~WT~EEDe~L~~lV~~~g~~~W~~IA~~l~---~~Rt~~qCr~Rw~~~L-----~p~lkrg~WT~EED~ 92 (334)
.+......++++||+|||+.|+++|++||.++|..|++.++ .+||..+|++||++++ +|.+++|.-+++|-.
T Consensus 4 ~~~~~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~~~~p~~~rg~~~P~~~l 83 (105)
T 2aje_A 4 MLEDPQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTAKISPQQRRGEPVPQELL 83 (105)
T ss_dssp -----CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTTTCCTTTTTCCSCCCHHH
T ss_pred CccccCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCCcccccCCCCCHHHH
Confidence 35566788999999999999999999999999999999652 3899999999999998 689999988888876
Q ss_pred H-HHHHHHHhC
Q 019911 93 M-ILELHSRWG 102 (334)
Q Consensus 93 ~-Ll~lv~~~G 102 (334)
. +++++..+|
T Consensus 84 ~rv~~~~~~~~ 94 (105)
T 2aje_A 84 NRVLNAHGYWT 94 (105)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 6 888877765
No 40
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=99.48 E-value=3.7e-14 Score=108.87 Aligned_cols=58 Identities=21% Similarity=0.225 Sum_probs=48.5
Q ss_pred cccCCCCCcCCCCHHHHHHHHHHHHHhCCCChHHHHhhhCCccChhhhhhhhhcccCCCCCC
Q 019911 22 SEEDLDLRRGPWTVEEDFKLINYISNHGEGRWNCLARCAGLKRTGKSCRLRWLNYLRPDVRR 83 (334)
Q Consensus 22 s~~~p~lkKg~WT~EEDe~L~~lV~~~g~~~W~~IA~~l~~~Rt~~qCr~Rw~~~L~p~lkr 83 (334)
..-+|+++||+||+|||++|+++|.+||. +|.+||+.| +|++.||+.||.. |....+.
T Consensus 15 ~~ldP~i~k~~wT~EED~~L~~l~~~~G~-kW~~IA~~l--gRt~~q~knRw~~-L~~~~~~ 72 (73)
T 2llk_A 15 YFQGDRNHVGKYTPEEIEKLKELRIKHGN-DWATIGAAL--GRSASSVKDRCRL-MKDTCNT 72 (73)
T ss_dssp ----CCCCCCSSCHHHHHHHHHHHHHHSS-CHHHHHHHH--TSCHHHHHHHHHH-CSCCCSC
T ss_pred eecCCCCCCCCCCHHHHHHHHHHHHHHCC-CHHHHHHHh--CCCHHHHHHHHHH-HHHHccC
Confidence 35679999999999999999999999998 799999999 7999999999985 5544443
No 41
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=99.21 E-value=3.7e-15 Score=118.48 Aligned_cols=56 Identities=21% Similarity=0.207 Sum_probs=53.1
Q ss_pred ccCCCCCCCCCCHHHHHHHHHHHHHhCCChhHHhhhCCCCCHHHHHHHHHHhhhHH
Q 019911 76 YLRPDVRRGNITLEEQLMILELHSRWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKH 131 (334)
Q Consensus 76 ~L~p~lkrg~WT~EED~~Ll~lv~~~G~~W~~IAk~lpgRT~~qcrnRW~~~lr~~ 131 (334)
.++|.+++++||+|||.+|+++|.+||++|..||++|+|||++|||+||.+++++.
T Consensus 9 ~~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~IA~~l~gRt~~q~k~r~~~~lrk~ 64 (89)
T 2ltp_A 9 SGRENLYFQGWTEEEMGTAKKGLLEHGRNWSAIARMVGSKTVSQCKNFYFNYKKRQ 64 (89)
Confidence 46788999999999999999999999999999999999999999999999998864
No 42
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=99.46 E-value=1e-13 Score=108.86 Aligned_cols=69 Identities=26% Similarity=0.449 Sum_probs=60.2
Q ss_pred CCCCHHHHHHHHHHHHHhCCCChHHHHhh----hCCccChhhhhhhhhccc-----CCCCCCC-CCCHHHHHHHHHHHHH
Q 019911 31 GPWTVEEDFKLINYISNHGEGRWNCLARC----AGLKRTGKSCRLRWLNYL-----RPDVRRG-NITLEEQLMILELHSR 100 (334)
Q Consensus 31 g~WT~EEDe~L~~lV~~~g~~~W~~IA~~----l~~~Rt~~qCr~Rw~~~L-----~p~lkrg-~WT~EED~~Ll~lv~~ 100 (334)
++||+|||++|+++|++||.++|..|++. ++ +||+.+|++||+++| +|.+++| +..++...+++.++..
T Consensus 1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~-~RT~~~lKdrWrnllk~~~~~p~~~~~~~~p~~~~~rv~~~~a~ 79 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNAD-HRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDRVLAAHAY 79 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCT-TSCHHHHHHHHHHHHHHHHSCGGGCCSSCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccC-CCCHHHHHHHHHHHHHhccCCcccccCCCCCHHHHHHHHHHHHH
Confidence 58999999999999999999999999996 66 999999999999988 6776665 6677777888888765
No 43
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=99.44 E-value=8.2e-14 Score=113.70 Aligned_cols=64 Identities=20% Similarity=0.379 Sum_probs=59.8
Q ss_pred CCCCCHHHHHHHHHHHHHhCC-ChhHHhhhCCCCCHHHHHHHHHHhhhHHhhhccCCccchhhhH
Q 019911 83 RGNITLEEQLMILELHSRWGN-RWSKIAQHLPGRTDNEIKNYWRTRVQKHAKQLKCDVNSKQFKD 146 (334)
Q Consensus 83 rg~WT~EED~~Ll~lv~~~G~-~W~~IAk~lpgRT~~qcrnRW~~~lr~~~kk~~~~~~~~~~~~ 146 (334)
||+||+|||.+|+++|.+||. +|..||..|++||+.||+.||.++|.+.+++..++.+++.+.-
T Consensus 1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~p~i~~~~WT~eEd~~L~ 65 (107)
T 2k9n_A 1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMITRNPRQCRERWNNYINPALRTDPWSPEEDMLLD 65 (107)
T ss_dssp CCSSCHHHHHHHHHHHHHHCSSCHHHHHHHTTTSCHHHHHHHHHHHSSSCCTTCCCCHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHhhhcCCCCHHHHHHHHHHHHcccccccccCHHHHHHHH
Confidence 589999999999999999994 8999999999999999999999999999999999998886553
No 44
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=99.42 E-value=7.8e-14 Score=117.76 Aligned_cols=83 Identities=19% Similarity=0.318 Sum_probs=61.5
Q ss_pred cCCCCCcCCCCHHHHHHHHHHHHHhCCCChHHHHhhhCCccChhhhhhhhhcccCCCCCCCCCCHHHHHHHHHHHHHhCC
Q 019911 24 EDLDLRRGPWTVEEDFKLINYISNHGEGRWNCLARCAGLKRTGKSCRLRWLNYLRPDVRRGNITLEEQLMILELHSRWGN 103 (334)
Q Consensus 24 ~~p~lkKg~WT~EEDe~L~~lV~~~g~~~W~~IA~~l~~~Rt~~qCr~Rw~~~L~p~lkrg~WT~EED~~Ll~lv~~~G~ 103 (334)
-+|.+++|+||+|||++|+++|.+||. +|..||+.|+ ||++.||+.||.++|++.+..++|+.+- +......+.
T Consensus 48 l~p~~~~~~Wt~eEd~~L~~~~~~~G~-~W~~Ia~~l~-gRt~~~~k~rw~~~l~~~~~~~~~~~~~----~~p~~~kk~ 121 (131)
T 3zqc_A 48 LDPAVVKHAWTPEEDETIFRNYLKLGS-KWSVIAKLIP-GRTDNAIKNRWNSSISKRISTNSNHKEI----LLPDRSKKR 121 (131)
T ss_dssp TSTTCCCSCCCHHHHHHHHHHHHHSCS-CHHHHTTTST-TCCHHHHHHHHHHTTGGGCCCCTTSCCC----CCCCCC---
T ss_pred cCccccCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHcC-CCCHHHHHHHHHHHHHHHhhcCCCcccc----cCchhhhhh
Confidence 468899999999999999999999997 9999999998 9999999999999999999999887652 111122235
Q ss_pred ChhHHhhhC
Q 019911 104 RWSKIAQHL 112 (334)
Q Consensus 104 ~W~~IAk~l 112 (334)
+|..|++.+
T Consensus 122 ~~~~i~k~~ 130 (131)
T 3zqc_A 122 KAADVPKKL 130 (131)
T ss_dssp ---------
T ss_pred hhhhcchhc
Confidence 688888765
No 45
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.42 E-value=3.2e-13 Score=105.14 Aligned_cols=52 Identities=23% Similarity=0.433 Sum_probs=48.1
Q ss_pred ccCCCCCcCCCCHHHHHHHHHHHHHhCCCChHHHHhhhCCccChhhhhhhhhcc
Q 019911 23 EEDLDLRRGPWTVEEDFKLINYISNHGEGRWNCLARCAGLKRTGKSCRLRWLNY 76 (334)
Q Consensus 23 ~~~p~lkKg~WT~EEDe~L~~lV~~~g~~~W~~IA~~l~~~Rt~~qCr~Rw~~~ 76 (334)
.......+++||+|||++|+++|++|| ++|.+||++|+ +|+..||+.||.++
T Consensus 11 ~~~~~~~~~~WT~eEd~~Ll~~v~~~G-~~W~~IA~~v~-~RT~~qcr~r~~~~ 62 (79)
T 2yus_A 11 KSKGASAGREWTEQETLLLLEALEMYK-DDWNKVSEHVG-SRTQDECILHFLRL 62 (79)
T ss_dssp CCCSSCCSCCCCHHHHHHHHHHHHHSS-SCHHHHHHHHS-SCCHHHHHHHHTTS
T ss_pred CccccccCCCcCHHHHHHHHHHHHHhC-CCHHHHHHHcC-CCCHHHHHHHHHHh
Confidence 345667799999999999999999999 69999999999 99999999999998
No 46
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.40 E-value=1.5e-13 Score=105.42 Aligned_cols=60 Identities=20% Similarity=0.400 Sum_probs=52.7
Q ss_pred CCCccccCCCCCcCCCCHHHHHHHHHHHHHhC---CCChHHHHhhhCCccChhhhhhhhhcccC
Q 019911 18 STTISEEDLDLRRGPWTVEEDFKLINYISNHG---EGRWNCLARCAGLKRTGKSCRLRWLNYLR 78 (334)
Q Consensus 18 ~~~~s~~~p~lkKg~WT~EEDe~L~~lV~~~g---~~~W~~IA~~l~~~Rt~~qCr~Rw~~~L~ 78 (334)
+..-..+.+.+.+++||+|||++|+++|++|| ..+|.+||++|| |||.+||+.||.+++.
T Consensus 6 ~~~~~~~~~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vp-GRT~~qcr~Ry~~L~~ 68 (73)
T 2cqr_A 6 SGSLRKERARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVP-SKSKEDCIARYKLLVS 68 (73)
T ss_dssp SSCCCCCTTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCS-SSCHHHHHHHHHHHHS
T ss_pred cccccccccccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 33445677889999999999999999999999 348999999998 9999999999998765
No 47
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.38 E-value=4.1e-13 Score=103.07 Aligned_cols=52 Identities=15% Similarity=0.281 Sum_probs=47.8
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhC----CChhHHhhhCCCCCHHHHHHHHHHhhhH
Q 019911 79 PDVRRGNITLEEQLMILELHSRWG----NRWSKIAQHLPGRTDNEIKNYWRTRVQK 130 (334)
Q Consensus 79 p~lkrg~WT~EED~~Ll~lv~~~G----~~W~~IAk~lpgRT~~qcrnRW~~~lr~ 130 (334)
+.+.+++||.|||.+|++++..|| .+|.+||++|||||.++||+||..+++.
T Consensus 14 ~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~Ry~~L~~d 69 (73)
T 2cqr_A 14 ARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLLVSG 69 (73)
T ss_dssp TTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHHHSS
T ss_pred cccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHc
Confidence 456789999999999999999999 6899999999999999999999988753
No 48
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=99.37 E-value=6.2e-13 Score=111.23 Aligned_cols=59 Identities=22% Similarity=0.385 Sum_probs=52.5
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHHHhCC-ChhHHhhh----CCCCCHHHHHHHHHHhhh-----HHhhhc
Q 019911 77 LRPDVRRGNITLEEQLMILELHSRWGN-RWSKIAQH----LPGRTDNEIKNYWRTRVQ-----KHAKQL 135 (334)
Q Consensus 77 L~p~lkrg~WT~EED~~Ll~lv~~~G~-~W~~IAk~----lpgRT~~qcrnRW~~~lr-----~~~kk~ 135 (334)
+.+..++++||+|||+.|+++|++||. +|+.|++. |++||+.+||+||+++++ +.+++.
T Consensus 11 ~~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~~~~~p~~krg 79 (121)
T 2juh_A 11 LSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRG 79 (121)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHHHHTCSTTCCC
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhhhccCCcccCC
Confidence 456778999999999999999999995 99999997 499999999999999999 555553
No 49
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=99.03 E-value=8.2e-14 Score=110.66 Aligned_cols=59 Identities=27% Similarity=0.428 Sum_probs=54.0
Q ss_pred CCccccCCCCCcCCCCHHHHHHHHHHHHHhCCCChHHHHhhhCCccChhhhhhhhhcccCC
Q 019911 19 TTISEEDLDLRRGPWTVEEDFKLINYISNHGEGRWNCLARCAGLKRTGKSCRLRWLNYLRP 79 (334)
Q Consensus 19 ~~~s~~~p~lkKg~WT~EEDe~L~~lV~~~g~~~W~~IA~~l~~~Rt~~qCr~Rw~~~L~p 79 (334)
+......|.+++|+||+|||++|+++|.+||. +|..||..|+ +||..||+.||.++|..
T Consensus 5 ~~~~~~~p~~~~~~WT~eEd~~l~~~~~~~G~-~W~~IA~~l~-gRt~~q~k~r~~~~lrk 63 (89)
T 2ltp_A 5 HHHSSGRENLYFQGWTEEEMGTAKKGLLEHGR-NWSAIARMVG-SKTVSQCKNFYFNYKKR 63 (89)
Confidence 34456678999999999999999999999998 8999999998 99999999999998874
No 50
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.34 E-value=6.6e-13 Score=103.33 Aligned_cols=48 Identities=23% Similarity=0.369 Sum_probs=45.2
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCChhHHhhhCCCCCHHHHHHHHHHh
Q 019911 80 DVRRGNITLEEQLMILELHSRWGNRWSKIAQHLPGRTDNEIKNYWRTR 127 (334)
Q Consensus 80 ~lkrg~WT~EED~~Ll~lv~~~G~~W~~IAk~lpgRT~~qcrnRW~~~ 127 (334)
...+++||+|||.+|+++|++||.+|.+||+++++||+.|||.||.++
T Consensus 15 ~~~~~~WT~eEd~~Ll~~v~~~G~~W~~IA~~v~~RT~~qcr~r~~~~ 62 (79)
T 2yus_A 15 ASAGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRL 62 (79)
T ss_dssp SCCSCCCCHHHHHHHHHHHHHSSSCHHHHHHHHSSCCHHHHHHHHTTS
T ss_pred cccCCCcCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHh
Confidence 456889999999999999999999999999999999999999999876
No 51
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=99.30 E-value=5.4e-12 Score=103.14 Aligned_cols=51 Identities=22% Similarity=0.405 Sum_probs=47.3
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCC-ChhHHhhhC----CCCCHHHHHHHHHHhhh
Q 019911 79 PDVRRGNITLEEQLMILELHSRWGN-RWSKIAQHL----PGRTDNEIKNYWRTRVQ 129 (334)
Q Consensus 79 p~lkrg~WT~EED~~Ll~lv~~~G~-~W~~IAk~l----pgRT~~qcrnRW~~~lr 129 (334)
+..++++||+|||+.|+++|++||. +|+.|++.+ ++||+.+||+||+++++
T Consensus 9 ~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk 64 (105)
T 2aje_A 9 QRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVH 64 (105)
T ss_dssp CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHh
Confidence 4567899999999999999999995 999999965 89999999999999997
No 52
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=99.29 E-value=1.5e-12 Score=109.12 Aligned_cols=61 Identities=21% Similarity=0.338 Sum_probs=51.3
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCC-ChhHHhhh----CCCCCHHHHHHHHHHhhh-----HHhhhccCCc
Q 019911 79 PDVRRGNITLEEQLMILELHSRWGN-RWSKIAQH----LPGRTDNEIKNYWRTRVQ-----KHAKQLKCDV 139 (334)
Q Consensus 79 p~lkrg~WT~EED~~Ll~lv~~~G~-~W~~IAk~----lpgRT~~qcrnRW~~~lr-----~~~kk~~~~~ 139 (334)
...++++||+|||+.|+++|++||. +|+.|++. |++||+.+||+||+++++ +.+++.....
T Consensus 27 ~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~~~~p~~kr~~~~p 97 (122)
T 2roh_A 27 QRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTASIAPQQRRGAPVP 97 (122)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHHHSCTTTCCCSSCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCCccccCCCCCC
Confidence 3457899999999999999999995 99999996 389999999999999995 5555543333
No 53
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=99.29 E-value=4e-12 Score=99.85 Aligned_cols=48 Identities=23% Similarity=0.442 Sum_probs=44.5
Q ss_pred CCCCHHHHHHHHHHHHHhCC-ChhHHhhh----CCCCCHHHHHHHHHHhhhHH
Q 019911 84 GNITLEEQLMILELHSRWGN-RWSKIAQH----LPGRTDNEIKNYWRTRVQKH 131 (334)
Q Consensus 84 g~WT~EED~~Ll~lv~~~G~-~W~~IAk~----lpgRT~~qcrnRW~~~lr~~ 131 (334)
.+||+|||+.|+++|++||. +|+.|++. |++||+.+||+||+++++..
T Consensus 1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~~ 53 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTA 53 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHHHHhc
Confidence 48999999999999999995 99999996 89999999999999999744
No 54
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.25 E-value=8e-12 Score=92.57 Aligned_cols=49 Identities=20% Similarity=0.343 Sum_probs=45.7
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCChhHHh---hhCCCCCHHHHHHHHHHhhhH
Q 019911 82 RRGNITLEEQLMILELHSRWGNRWSKIA---QHLPGRTDNEIKNYWRTRVQK 130 (334)
Q Consensus 82 krg~WT~EED~~Ll~lv~~~G~~W~~IA---k~lpgRT~~qcrnRW~~~lr~ 130 (334)
++.+||+|||+.|++.|++||.+|..|+ +++++||+.++|+||+++.|.
T Consensus 7 ~r~~WT~EE~~~L~~gV~k~G~~W~~I~~~y~f~~~RT~VdLKdk~r~L~k~ 58 (62)
T 1x58_A 7 GRKDFTKEEVNYLFHGVKTMGNHWNSILWSFPFQKGRRAVDLAHKYHRLISG 58 (62)
T ss_dssp CSSSCCHHHHHHHHHHHHHHCSCHHHHHHHSCCCTTCCHHHHHHHHHHHHTC
T ss_pred CCCCCCHHHHHHHHHHHHHHhHhHHHHHHhCCCccCcccchHHHHHHHHHhc
Confidence 6789999999999999999999999999 467999999999999998875
No 55
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=99.23 E-value=5.1e-12 Score=116.30 Aligned_cols=55 Identities=25% Similarity=0.457 Sum_probs=48.8
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCC------hhHHhhhCCCCCHHHHHHHHHHhhhHHhh
Q 019911 79 PDVRRGNITLEEQLMILELHSRWGNR------WSKIAQHLPGRTDNEIKNYWRTRVQKHAK 133 (334)
Q Consensus 79 p~lkrg~WT~EED~~Ll~lv~~~G~~------W~~IAk~lpgRT~~qcrnRW~~~lr~~~k 133 (334)
+.+++++||+|||++|+++|+++|++ |..||++|||||+++||+||+.+|++.+.
T Consensus 4 ~~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpGRT~nsIRnRw~~~L~~~ln 64 (246)
T 1ign_A 4 PSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLE 64 (246)
T ss_dssp ----CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGGGCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCCCCHHHHHHHHHHHHhhhcc
Confidence 35788999999999999999999975 99999999999999999999999999875
No 56
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=99.18 E-value=3.2e-11 Score=96.60 Aligned_cols=50 Identities=20% Similarity=0.368 Sum_probs=45.4
Q ss_pred CCCCCCHHHHHHHHHHHHHhC----CChhHHhhhCCCCCHHHHHHHHHHhhhHH
Q 019911 82 RRGNITLEEQLMILELHSRWG----NRWSKIAQHLPGRTDNEIKNYWRTRVQKH 131 (334)
Q Consensus 82 krg~WT~EED~~Ll~lv~~~G----~~W~~IAk~lpgRT~~qcrnRW~~~lr~~ 131 (334)
.+++||+|||.+|++++.+|| .+|.+||+.|||||.++||+||..+++..
T Consensus 7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpGRT~~q~k~ry~~l~~dv 60 (93)
T 2cjj_A 7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDI 60 (93)
T ss_dssp -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 467999999999999999996 57999999999999999999999987654
No 57
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=99.09 E-value=4.8e-11 Score=95.54 Aligned_cols=48 Identities=19% Similarity=0.376 Sum_probs=43.3
Q ss_pred CcCCCCHHHHHHHHHHHHHhC---CCChHHHHhhhCCccChhhhhhhhhccc
Q 019911 29 RRGPWTVEEDFKLINYISNHG---EGRWNCLARCAGLKRTGKSCRLRWLNYL 77 (334)
Q Consensus 29 kKg~WT~EEDe~L~~lV~~~g---~~~W~~IA~~l~~~Rt~~qCr~Rw~~~L 77 (334)
.+++||+|||++|++++.+|+ ..+|.+||+.|| |||.+||+.||..++
T Consensus 7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vp-GRT~~q~k~ry~~l~ 57 (93)
T 2cjj_A 7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVE-GRTPEEVKKHYEILV 57 (93)
T ss_dssp -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHST-TCCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence 367899999999999999997 447999999998 999999999998864
No 58
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.96 E-value=9.5e-10 Score=81.18 Aligned_cols=48 Identities=13% Similarity=0.054 Sum_probs=44.0
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCChhHHhhhCCCCCHHHHHHHHHHhhh
Q 019911 82 RRGNITLEEQLMILELHSRWGNRWSKIAQHLPGRTDNEIKNYWRTRVQ 129 (334)
Q Consensus 82 krg~WT~EED~~Ll~lv~~~G~~W~~IAk~lpgRT~~qcrnRW~~~lr 129 (334)
..++||+||++++++++..||.+|..||.+||+||..+|+.+|....+
T Consensus 11 ~~~~WT~eE~~~F~~~~~~~gk~w~~Ia~~l~~rt~~~~v~~Yy~~Kk 58 (61)
T 2eqr_A 11 FMNVWTDHEKEIFKDKFIQHPKNFGLIASYLERKSVPDCVLYYYLTKK 58 (61)
T ss_dssp CCCSCCHHHHHHHHHHHHHSTTCHHHHHHHCTTSCHHHHHHHHHHHTC
T ss_pred cCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHhcC
Confidence 457999999999999999999999999999999999999999976443
No 59
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=98.88 E-value=3.5e-09 Score=84.57 Aligned_cols=65 Identities=18% Similarity=0.212 Sum_probs=59.2
Q ss_pred hhhhhhhhcccCCCCCCCCCCHHHHHHHHHHHHHhCCChhHHhhhC-----CCCCHHHHHHHHHHhhhHHhhhc
Q 019911 67 KSCRLRWLNYLRPDVRRGNITLEEQLMILELHSRWGNRWSKIAQHL-----PGRTDNEIKNYWRTRVQKHAKQL 135 (334)
Q Consensus 67 ~qCr~Rw~~~L~p~lkrg~WT~EED~~Ll~lv~~~G~~W~~IAk~l-----pgRT~~qcrnRW~~~lr~~~kk~ 135 (334)
.=+.++|.++|.+ ++||.||+..|++|+++||.+|..|+..+ ++||..++|+||..+.++.++..
T Consensus 18 ~yt~eeY~~~L~~----~~WTkEETd~Lf~L~~~fdlRW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~~l~~~r 87 (93)
T 3hm5_A 18 VYSEQEYQLYLHD----DAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVR 87 (93)
T ss_dssp CCCHHHHHHHTCB----TTBCHHHHHHHHHHHHHTTTCHHHHHHHSCTTTSCCCCHHHHHHHHHHHHHHHHHHT
T ss_pred ccCHHHHHHHcCC----CCCCHHHHHHHHHHHHHhCCCeeeehhhhccCCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 4577899999987 79999999999999999999999999988 58999999999999999877654
No 60
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.86 E-value=2.8e-09 Score=78.66 Aligned_cols=51 Identities=14% Similarity=0.154 Sum_probs=45.2
Q ss_pred CCCCCcCCCCHHHHHHHHHHHHHhCCCChHHHHhhhCCccChhhhhhhhhccc
Q 019911 25 DLDLRRGPWTVEEDFKLINYISNHGEGRWNCLARCAGLKRTGKSCRLRWLNYL 77 (334)
Q Consensus 25 ~p~lkKg~WT~EEDe~L~~lV~~~g~~~W~~IA~~l~~~Rt~~qCr~Rw~~~L 77 (334)
......++||+||++++++++.+||. +|..||..|+ +|+..||+.+|....
T Consensus 7 ~~r~~~~~WT~eE~~~F~~~~~~~gk-~w~~Ia~~l~-~rt~~~~v~~Yy~~K 57 (61)
T 2eqr_A 7 GDRQFMNVWTDHEKEIFKDKFIQHPK-NFGLIASYLE-RKSVPDCVLYYYLTK 57 (61)
T ss_dssp CCCSCCCSCCHHHHHHHHHHHHHSTT-CHHHHHHHCT-TSCHHHHHHHHHHHT
T ss_pred cccccCCCCCHHHHHHHHHHHHHhCC-CHHHHHHHcC-CCCHHHHHHHHHHhc
Confidence 33456799999999999999999997 9999999998 999999999997643
No 61
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=98.82 E-value=2.4e-09 Score=79.25 Aligned_cols=50 Identities=18% Similarity=0.252 Sum_probs=44.7
Q ss_pred CCcCCCCHHHHHHHHHHHHHhCCCChHHHH---hhhCCccChhhhhhhhhcccCC
Q 019911 28 LRRGPWTVEEDFKLINYISNHGEGRWNCLA---RCAGLKRTGKSCRLRWLNYLRP 79 (334)
Q Consensus 28 lkKg~WT~EEDe~L~~lV~~~g~~~W~~IA---~~l~~~Rt~~qCr~Rw~~~L~p 79 (334)
..+.+||+|||+.|++.|++||. +|..|+ .++. +|+...+.+||+++...
T Consensus 6 ~~r~~WT~EE~~~L~~gV~k~G~-~W~~I~~~y~f~~-~RT~VdLKdk~r~L~k~ 58 (62)
T 1x58_A 6 SGRKDFTKEEVNYLFHGVKTMGN-HWNSILWSFPFQK-GRRAVDLAHKYHRLISG 58 (62)
T ss_dssp CCSSSCCHHHHHHHHHHHHHHCS-CHHHHHHHSCCCT-TCCHHHHHHHHHHHHTC
T ss_pred CCCCCCCHHHHHHHHHHHHHHhH-hHHHHHHhCCCcc-CcccchHHHHHHHHHhc
Confidence 37899999999999999999998 999999 4555 89999999999987653
No 62
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=98.78 E-value=9.7e-09 Score=93.81 Aligned_cols=49 Identities=18% Similarity=0.375 Sum_probs=45.8
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCChhHHhhhCCCCCHHHHHHHHHHhhhH
Q 019911 82 RRGNITLEEQLMILELHSRWGNRWSKIAQHLPGRTDNEIKNYWRTRVQK 130 (334)
Q Consensus 82 krg~WT~EED~~Ll~lv~~~G~~W~~IAk~lpgRT~~qcrnRW~~~lr~ 130 (334)
..++||+||++++++++.+||++|..||+.+++||..|||++|.++.++
T Consensus 132 ~s~~WTeEE~~lFleAl~kYGKDW~~IAk~VgTKT~~QcKnfY~~~kKR 180 (235)
T 2iw5_B 132 CNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRR 180 (235)
T ss_dssp CCSSCCHHHHHHHHHHHHHHSSCHHHHHHHHSSCCHHHHHHHHHHTTTT
T ss_pred cCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 4679999999999999999999999999999999999999999987764
No 63
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.76 E-value=5.1e-09 Score=79.99 Aligned_cols=51 Identities=20% Similarity=0.276 Sum_probs=44.3
Q ss_pred CCCcCCCCHHHHHHHHHHHHHhC---CCChHHHHhhhCCccChhhhhhhhhcccCC
Q 019911 27 DLRRGPWTVEEDFKLINYISNHG---EGRWNCLARCAGLKRTGKSCRLRWLNYLRP 79 (334)
Q Consensus 27 ~lkKg~WT~EEDe~L~~lV~~~g---~~~W~~IA~~l~~~Rt~~qCr~Rw~~~L~p 79 (334)
..+++.||.|||++|.+++++|+ ..+|.+||..+| |+..+|+.||..+...
T Consensus 5 ~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~lg--Rt~~eV~~~y~~L~~d 58 (72)
T 2cqq_A 5 SSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHELG--RSVTDVTTKAKQLKDS 58 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHHT--SCHHHHHHHHHHHHHS
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHhC--CCHHHHHHHHHHHHHh
Confidence 34578899999999999999998 347999999984 9999999999887654
No 64
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.75 E-value=1e-08 Score=78.23 Aligned_cols=50 Identities=20% Similarity=0.298 Sum_probs=44.6
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhC----CChhHHhhhCCCCCHHHHHHHHHHhhhH
Q 019911 80 DVRRGNITLEEQLMILELHSRWG----NRWSKIAQHLPGRTDNEIKNYWRTRVQK 130 (334)
Q Consensus 80 ~lkrg~WT~EED~~Ll~lv~~~G----~~W~~IAk~lpgRT~~qcrnRW~~~lr~ 130 (334)
..+++.||.||+.+|.+++.+|+ .+|.+||..+ |||.++|+.||..+++.
T Consensus 5 ~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l-gRt~~eV~~~y~~L~~d 58 (72)
T 2cqq_A 5 SSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLKDS 58 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHHHHS
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh-CCCHHHHHHHHHHHHHh
Confidence 34678999999999999999997 5799999997 99999999999887654
No 65
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.60 E-value=3.4e-08 Score=75.53 Aligned_cols=47 Identities=23% Similarity=0.468 Sum_probs=43.0
Q ss_pred CCCCHHHHHHHHHHHHHhCC---CChHHHHhhhCCccChhhhhhhhhcccC
Q 019911 31 GPWTVEEDFKLINYISNHGE---GRWNCLARCAGLKRTGKSCRLRWLNYLR 78 (334)
Q Consensus 31 g~WT~EEDe~L~~lV~~~g~---~~W~~IA~~l~~~Rt~~qCr~Rw~~~L~ 78 (334)
..||.+|+++|.+++..|+. ++|.+||..|| +|+..+|+.||..++.
T Consensus 9 ~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~-gKT~eE~~~hY~~l~~ 58 (73)
T 1wgx_A 9 KEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVG-SRSPEECQRKYMENPR 58 (73)
T ss_dssp SCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTT-TSCHHHHHHHHHHSSS
T ss_pred CCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcC-CCCHHHHHHHHHHHHh
Confidence 57999999999999999975 47999999999 9999999999998764
No 66
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=98.58 E-value=3.3e-08 Score=99.40 Aligned_cols=46 Identities=20% Similarity=0.394 Sum_probs=42.6
Q ss_pred CCCCHHHHHHHHHHHHHhCCChhHHhhhCCCCCHHHHHHHHHHhhh
Q 019911 84 GNITLEEQLMILELHSRWGNRWSKIAQHLPGRTDNEIKNYWRTRVQ 129 (334)
Q Consensus 84 g~WT~EED~~Ll~lv~~~G~~W~~IAk~lpgRT~~qcrnRW~~~lr 129 (334)
..||+||..++++++.+||..|..||+.+..||..|||++|.++.+
T Consensus 381 ~~WT~eE~~~f~~al~~yGkdw~~IA~~VgTKT~~Qvk~fy~~~kk 426 (482)
T 2xag_B 381 ARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRR 426 (482)
T ss_dssp SCCCHHHHHHHHHHHHHHTTCHHHHHHHHSSCCHHHHHHHHHHTTT
T ss_pred CCCCHHHHHHHHHHHHHHCcCHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 4899999999999999999999999999999999999999975444
No 67
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=98.46 E-value=9.4e-08 Score=70.19 Aligned_cols=48 Identities=23% Similarity=0.523 Sum_probs=43.3
Q ss_pred cCCCCHHHHHHHHHHHHHh--------CCCChHHHHh-hhCCccChhhhhhhhhcccC
Q 019911 30 RGPWTVEEDFKLINYISNH--------GEGRWNCLAR-CAGLKRTGKSCRLRWLNYLR 78 (334)
Q Consensus 30 Kg~WT~EEDe~L~~lV~~~--------g~~~W~~IA~-~l~~~Rt~~qCr~Rw~~~L~ 78 (334)
|.+||+|||++|+++|.++ |..-|..+|+ .++ +++-.+||+||.++|.
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~-~HtwqSwRdRy~k~l~ 58 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLT-QHSWQSLKDRYLKHLR 58 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSS-SCCSHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCC-CCCHHHHHHHHHHHcc
Confidence 6789999999999999999 5556999999 676 9999999999999875
No 68
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=98.44 E-value=2.1e-07 Score=68.30 Aligned_cols=47 Identities=19% Similarity=0.339 Sum_probs=42.2
Q ss_pred CCCCCHHHHHHHHHHHHHh--------CCC-hhHHhh-hCCCCCHHHHHHHHHHhhh
Q 019911 83 RGNITLEEQLMILELHSRW--------GNR-WSKIAQ-HLPGRTDNEIKNYWRTRVQ 129 (334)
Q Consensus 83 rg~WT~EED~~Ll~lv~~~--------G~~-W~~IAk-~lpgRT~~qcrnRW~~~lr 129 (334)
|.+||+|||.+|++.|.++ |+. |..+++ .+|++|-.+||+||...|+
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k~l~ 58 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHLR 58 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHHHHcc
Confidence 5689999999999999999 533 999999 7899999999999988764
No 69
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.41 E-value=2.4e-07 Score=70.83 Aligned_cols=48 Identities=13% Similarity=0.147 Sum_probs=43.2
Q ss_pred CCCCCHHHHHHHHHHHHHhCC----ChhHHhhhCCCCCHHHHHHHHHHhhhH
Q 019911 83 RGNITLEEQLMILELHSRWGN----RWSKIAQHLPGRTDNEIKNYWRTRVQK 130 (334)
Q Consensus 83 rg~WT~EED~~Ll~lv~~~G~----~W~~IAk~lpgRT~~qcrnRW~~~lr~ 130 (334)
...||.||+.+|.+++..|+. +|.+||..++|||..+|+.||..+++.
T Consensus 8 ~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~gKT~eE~~~hY~~l~~~ 59 (73)
T 1wgx_A 8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENPRG 59 (73)
T ss_dssp SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSSSS
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCCCCHHHHHHHHHHHHhc
Confidence 468999999999999999974 699999999999999999999887543
No 70
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=98.38 E-value=3.1e-07 Score=83.90 Aligned_cols=49 Identities=20% Similarity=0.411 Sum_probs=45.7
Q ss_pred CCcCCCCHHHHHHHHHHHHHhCCCChHHHHhhhCCccChhhhhhhhhcccC
Q 019911 28 LRRGPWTVEEDFKLINYISNHGEGRWNCLARCAGLKRTGKSCRLRWLNYLR 78 (334)
Q Consensus 28 lkKg~WT~EEDe~L~~lV~~~g~~~W~~IA~~l~~~Rt~~qCr~Rw~~~L~ 78 (334)
...++||.||++++++++.+||. +|..||+.|+ +||..||+.+|.++.+
T Consensus 131 k~s~~WTeEE~~lFleAl~kYGK-DW~~IAk~Vg-TKT~~QcKnfY~~~kK 179 (235)
T 2iw5_B 131 KCNARWTTEEQLLAVQAIRKYGR-DFQAISDVIG-NKSVVQVKNFFVNYRR 179 (235)
T ss_dssp CCCSSCCHHHHHHHHHHHHHHSS-CHHHHHHHHS-SCCHHHHHHHHHHTTT
T ss_pred ccCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 45789999999999999999997 9999999999 9999999999998765
No 71
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=98.13 E-value=4.7e-07 Score=69.00 Aligned_cols=44 Identities=20% Similarity=0.408 Sum_probs=39.2
Q ss_pred cCCCCHHHHHHHHHHHHHhCCC---ChHHHHhhhCCccChhhhhhhhh
Q 019911 30 RGPWTVEEDFKLINYISNHGEG---RWNCLARCAGLKRTGKSCRLRWL 74 (334)
Q Consensus 30 Kg~WT~EEDe~L~~lV~~~g~~---~W~~IA~~l~~~Rt~~qCr~Rw~ 74 (334)
...||.+|+++|.+++++|+.+ +|.+||..|| ||+..+|+.+|.
T Consensus 20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~Vp-GKT~eEVk~hY~ 66 (74)
T 4eef_G 20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVK-GRTPEEVKKHYE 66 (74)
T ss_dssp --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSC-SSCHHHHHGGGC
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcC-CCCHHHHHHHHH
Confidence 4579999999999999999754 7999999999 999999999985
No 72
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.10 E-value=6.8e-06 Score=60.84 Aligned_cols=49 Identities=14% Similarity=0.228 Sum_probs=44.3
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCChhHHhh-hCCCCCHHHHHHHHHH
Q 019911 78 RPDVRRGNITLEEQLMILELHSRWGNRWSKIAQ-HLPGRTDNEIKNYWRT 126 (334)
Q Consensus 78 ~p~lkrg~WT~EED~~Ll~lv~~~G~~W~~IAk-~lpgRT~~qcrnRW~~ 126 (334)
.|.+....||+||-.++.+.+.+||..|..|++ .++.||..+|...|..
T Consensus 4 ~p~~~~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY~ 53 (63)
T 2yqk_A 4 GSSGIEKCWTEDEVKRFVKGLRQYGKNFFRIRKELLPNKETGELITFYYY 53 (63)
T ss_dssp CCCCCCCSCCHHHHHHHHHHHHHTCSCHHHHHHHSCTTSCHHHHHHHHHH
T ss_pred CCCcCCCCcCHHHHHHHHHHHHHhCccHHHHHHHHcCCCcHHHHHHHHhc
Confidence 356778899999999999999999999999999 5899999999988754
No 73
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=98.09 E-value=6.6e-06 Score=64.98 Aligned_cols=49 Identities=27% Similarity=0.305 Sum_probs=45.1
Q ss_pred CCCHHHHHHHHHHHHHhCC---ChhHHhhhCCCCCHHHHHHHHHHhhhHHhh
Q 019911 85 NITLEEQLMILELHSRWGN---RWSKIAQHLPGRTDNEIKNYWRTRVQKHAK 133 (334)
Q Consensus 85 ~WT~EED~~Ll~lv~~~G~---~W~~IAk~lpgRT~~qcrnRW~~~lr~~~k 133 (334)
.||.|||+.||..+++-|. .|..||+.|.+|+.+||++||..+++-..+
T Consensus 35 lWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~Nks~nqV~~RFq~Lm~Lf~~ 86 (95)
T 1ug2_A 35 LWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELMQLFHT 86 (95)
T ss_dssp SSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHHHHHHH
T ss_pred EeccccCHHHHHHHHhcCCChhHHHHHHHHHccCCHHHHHHHHHHHHHHHHH
Confidence 6999999999999999996 799999999999999999999998876543
No 74
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=98.07 E-value=1.9e-05 Score=75.29 Aligned_cols=102 Identities=15% Similarity=0.175 Sum_probs=81.5
Q ss_pred CCCHHHHHHHHHHHHHhCCCChHHHHhhhCCccChhhhhh-------hhhcc----------------------------
Q 019911 32 PWTVEEDFKLINYISNHGEGRWNCLARCAGLKRTGKSCRL-------RWLNY---------------------------- 76 (334)
Q Consensus 32 ~WT~EEDe~L~~lV~~~g~~~W~~IA~~l~~~Rt~~qCr~-------Rw~~~---------------------------- 76 (334)
.||..+...++.++.+||..+|..||..|+ +++...++. ||..+
T Consensus 112 ~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~-~Kt~eEV~~Y~~vFw~ry~ei~d~ek~~~~IE~gE~ki~r~~~~~~~l~ 190 (304)
T 1ofc_X 112 AWTKRDFNQFIKANEKYGRDDIDNIAKDVE-GKTPEEVIEYNAVFWERCTELQDIERIMGQIERGEGKIQRRLSIKKALD 190 (304)
T ss_dssp TCCHHHHHHHHHHHHHHCTTCHHHHTTSST-TCCHHHHHHHHHHHHHHGGGCTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHhCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHhHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 599999999999999999999999999998 899877742 22110
Q ss_pred ---------------cCCCCCCCCCCHHHHHHHHHHHHHhCC----ChhHHhh------------hCCCCCHHHHHHHHH
Q 019911 77 ---------------LRPDVRRGNITLEEQLMILELHSRWGN----RWSKIAQ------------HLPGRTDNEIKNYWR 125 (334)
Q Consensus 77 ---------------L~p~lkrg~WT~EED~~Ll~lv~~~G~----~W~~IAk------------~lpgRT~~qcrnRW~ 125 (334)
..+..+...||+|||+.||-.+.+||- .|..|.. ++..||+.+|..|..
T Consensus 191 ~Ki~~~~~P~~~L~i~y~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwf~kSRTp~el~rRc~ 270 (304)
T 1ofc_X 191 QKMSRYRAPFHQLRLQYGNNKGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRCN 270 (304)
T ss_dssp HHHHTCSSHHHHCCCCCTTCCCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHHH
T ss_pred HHHHHhcCcHHHhccccCCCCCCccCHHHHHHHHHHHHHhcCCCcchHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHHH
Confidence 011224468999999999999999995 5999962 347799999999999
Q ss_pred HhhhHHhhh
Q 019911 126 TRVQKHAKQ 134 (334)
Q Consensus 126 ~~lr~~~kk 134 (334)
.+++-..|.
T Consensus 271 tLi~~iekE 279 (304)
T 1ofc_X 271 TLITLIERE 279 (304)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999866443
No 75
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=97.16 E-value=1.3e-06 Score=65.51 Aligned_cols=46 Identities=15% Similarity=0.246 Sum_probs=42.5
Q ss_pred CCCHHHHHHHHHHHHHhCC---ChhHHhhhCCCCCHHHHHHHHHHhhhHH
Q 019911 85 NITLEEQLMILELHSRWGN---RWSKIAQHLPGRTDNEIKNYWRTRVQKH 131 (334)
Q Consensus 85 ~WT~EED~~Ll~lv~~~G~---~W~~IAk~lpgRT~~qcrnRW~~~lr~~ 131 (334)
.||.|||+.|+..+++-|. .|..||+.| +|+.+||++||..+++-.
T Consensus 16 lWTReeDR~IL~~cq~~G~s~~tfa~iA~~L-nks~~QV~~RF~~Lm~Lf 64 (70)
T 2lr8_A 16 LWTRNDDRVILLECQKRGPSSKTFAYLAAKL-DKNPNQVSERFQQLMKLF 64 (70)
Confidence 6999999999999999997 799999999 999999999999887643
No 76
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.88 E-value=1.6e-05 Score=58.79 Aligned_cols=49 Identities=8% Similarity=0.078 Sum_probs=44.2
Q ss_pred CCCCCcCCCCHHHHHHHHHHHHHhCCCChHHHHh-hhCCccChhhhhhhhhc
Q 019911 25 DLDLRRGPWTVEEDFKLINYISNHGEGRWNCLAR-CAGLKRTGKSCRLRWLN 75 (334)
Q Consensus 25 ~p~lkKg~WT~EEDe~L~~lV~~~g~~~W~~IA~-~l~~~Rt~~qCr~Rw~~ 75 (334)
-|.+....||+||-++..+++.+||. +|..|++ .|+ +|+..+|.+-|..
T Consensus 4 ~p~~~~~~WT~eE~~~Fe~~l~~yGK-df~~I~~~~v~-~Kt~~~~v~fYY~ 53 (63)
T 2yqk_A 4 GSSGIEKCWTEDEVKRFVKGLRQYGK-NFFRIRKELLP-NKETGELITFYYY 53 (63)
T ss_dssp CCCCCCCSCCHHHHHHHHHHHHHTCS-CHHHHHHHSCT-TSCHHHHHHHHHH
T ss_pred CCCcCCCCcCHHHHHHHHHHHHHhCc-cHHHHHHHHcC-CCcHHHHHHHHhc
Confidence 47788899999999999999999998 9999999 588 9999999987754
No 77
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=97.80 E-value=4.6e-06 Score=63.54 Aligned_cols=43 Identities=28% Similarity=0.385 Sum_probs=38.1
Q ss_pred CCCCCHHHHHHHHHHHHHhCC----ChhHHhhhCCCCCHHHHHHHHH
Q 019911 83 RGNITLEEQLMILELHSRWGN----RWSKIAQHLPGRTDNEIKNYWR 125 (334)
Q Consensus 83 rg~WT~EED~~Ll~lv~~~G~----~W~~IAk~lpgRT~~qcrnRW~ 125 (334)
..+||.||+++|..++..|+. +|.+||..+||||..+|+.+|.
T Consensus 20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpGKT~eEVk~hY~ 66 (74)
T 4eef_G 20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHYE 66 (74)
T ss_dssp --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCSSCHHHHHGGGC
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCCCCHHHHHHHHH
Confidence 458999999999999999974 7999999999999999998773
No 78
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=97.77 E-value=6.7e-05 Score=59.72 Aligned_cols=61 Identities=20% Similarity=0.242 Sum_probs=51.9
Q ss_pred hhhhcccCCCCCCCCCCHHHHHHHHHHHHHhCCChhHHhhhCC-----CCCHHHHHHHHHHhhhHHhhhc
Q 019911 71 LRWLNYLRPDVRRGNITLEEQLMILELHSRWGNRWSKIAQHLP-----GRTDNEIKNYWRTRVQKHAKQL 135 (334)
Q Consensus 71 ~Rw~~~L~p~lkrg~WT~EED~~Ll~lv~~~G~~W~~IAk~lp-----gRT~~qcrnRW~~~lr~~~kk~ 135 (334)
+.|..+|.. ..||.||...|++|+++|+-+|..|+..+. .||-.++|.||....++.++..
T Consensus 22 eEY~~~L~~----~~WT~eETd~LfdLc~~fdlRw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~~l~~~r 87 (93)
T 4iej_A 22 QEYQLYLHD----DAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVR 87 (93)
T ss_dssp HHHHHHTCB----TTBCHHHHHHHHHHHHHTTTCHHHHHHHCCTTTSCCCCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhCC----CCCCHHHHHHHHHHHHHcCCCeEEEeeccccCCCCCCCHHHHHHHHHHHHHHHHHhh
Confidence 345556653 689999999999999999999999999763 7999999999999998876653
No 79
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=97.65 E-value=1.7e-05 Score=63.29 Aligned_cols=50 Identities=18% Similarity=0.248 Sum_probs=44.1
Q ss_pred CCcCCCCHHHHHHHHHHHHHhCCCChHHHHhhhC----CccChhhhhhhhhcccC
Q 019911 28 LRRGPWTVEEDFKLINYISNHGEGRWNCLARCAG----LKRTGKSCRLRWLNYLR 78 (334)
Q Consensus 28 lkKg~WT~EEDe~L~~lV~~~g~~~W~~IA~~l~----~~Rt~~qCr~Rw~~~L~ 78 (334)
|...+||.||++.|++|+++|+- +|..|+..+. .+|+..+++.||..+..
T Consensus 28 L~~~~WTkEETd~Lf~L~~~fdl-RW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~ 81 (93)
T 3hm5_A 28 LHDDAWTKAETDHLFDLSRRFDL-RFVVIHDRYDHQQFKKRSVEDLKERYYHICA 81 (93)
T ss_dssp TCBTTBCHHHHHHHHHHHHHTTT-CHHHHHHHSCTTTSCCCCHHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHHhCC-CeeeehhhhccCCCCCCCHHHHHHHHHHHHH
Confidence 44589999999999999999998 9999999983 27999999999987654
No 80
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=97.59 E-value=9.8e-05 Score=58.84 Aligned_cols=44 Identities=18% Similarity=0.118 Sum_probs=41.1
Q ss_pred CCCCCHHHHHHHHHHHHHhCCChhHHhhhCCCCCHHHHHHHHHH
Q 019911 83 RGNITLEEQLMILELHSRWGNRWSKIAQHLPGRTDNEIKNYWRT 126 (334)
Q Consensus 83 rg~WT~EED~~Ll~lv~~~G~~W~~IAk~lpgRT~~qcrnRW~~ 126 (334)
...||+||.+++.+....||.+|..|+..|++||..+|-..|..
T Consensus 43 ~~~WT~eE~~~F~~~~~~~gK~F~~Ia~~l~~Kt~~~cV~~YY~ 86 (94)
T 4a69_C 43 MNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYL 86 (94)
T ss_dssp TCCCCHHHHHHHHHHHHHSTTCHHHHHHTCTTCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHHHHHhc
Confidence 46899999999999999999999999999999999999988754
No 81
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=97.59 E-value=0.00013 Score=55.06 Aligned_cols=44 Identities=20% Similarity=0.353 Sum_probs=40.7
Q ss_pred CCCCCHHHHHHHHHHHHHhCCChhHHhh-hCCCCCHHHHHHHHHH
Q 019911 83 RGNITLEEQLMILELHSRWGNRWSKIAQ-HLPGRTDNEIKNYWRT 126 (334)
Q Consensus 83 rg~WT~EED~~Ll~lv~~~G~~W~~IAk-~lpgRT~~qcrnRW~~ 126 (334)
...||+||-.++.+.+..||..|..|++ .+++||..+|...|..
T Consensus 8 ~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY~ 52 (70)
T 2crg_A 8 MEEWSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYYYM 52 (70)
T ss_dssp SCCCCHHHHHHHHHHHHHTCSCHHHHHHTTCSSSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCccHHHHHHHHcCCCCHHHHHHHHHh
Confidence 4589999999999999999999999999 5899999999988864
No 82
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=97.52 E-value=8.6e-05 Score=74.72 Aligned_cols=49 Identities=20% Similarity=0.411 Sum_probs=44.4
Q ss_pred CCcCCCCHHHHHHHHHHHHHhCCCChHHHHhhhCCccChhhhhhhhhcccC
Q 019911 28 LRRGPWTVEEDFKLINYISNHGEGRWNCLARCAGLKRTGKSCRLRWLNYLR 78 (334)
Q Consensus 28 lkKg~WT~EEDe~L~~lV~~~g~~~W~~IA~~l~~~Rt~~qCr~Rw~~~L~ 78 (334)
....+||.||-+++++++.+||. +|..||+.|+ +|+..||+..|.++..
T Consensus 378 ~~~~~WT~eE~~~f~~al~~yGk-dw~~IA~~Vg-TKT~~Qvk~fy~~~kk 426 (482)
T 2xag_B 378 KCNARWTTEEQLLAVQAIRKYGR-DFQAISDVIG-NKSVVQVKNFFVNYRR 426 (482)
T ss_dssp CCCSCCCHHHHHHHHHHHHHHTT-CHHHHHHHHS-SCCHHHHHHHHHHTTT
T ss_pred ccCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 45689999999999999999997 9999999999 9999999999876543
No 83
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=97.31 E-value=0.00021 Score=56.90 Aligned_cols=44 Identities=16% Similarity=0.294 Sum_probs=40.6
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCChHHHHhhhCCccChhhhhhhhhc
Q 019911 30 RGPWTVEEDFKLINYISNHGEGRWNCLARCAGLKRTGKSCRLRWLN 75 (334)
Q Consensus 30 Kg~WT~EEDe~L~~lV~~~g~~~W~~IA~~l~~~Rt~~qCr~Rw~~ 75 (334)
...||+||.+++.+++.+||. +|..||..|+ +|+..+|.+.|..
T Consensus 43 ~~~WT~eE~~~F~~~~~~~gK-~F~~Ia~~l~-~Kt~~~cV~~YY~ 86 (94)
T 4a69_C 43 MNMWSEQEKETFREKFMQHPK-NFGLIASFLE-RKTVAECVLYYYL 86 (94)
T ss_dssp TCCCCHHHHHHHHHHHHHSTT-CHHHHHHTCT-TCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCC-CHHHHHHHcC-CCCHHHHHHHHhc
Confidence 578999999999999999998 9999999998 9999999987754
No 84
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=97.31 E-value=0.00023 Score=53.61 Aligned_cols=45 Identities=11% Similarity=0.122 Sum_probs=40.3
Q ss_pred CcCCCCHHHHHHHHHHHHHhCCCChHHHHh-hhCCccChhhhhhhhhc
Q 019911 29 RRGPWTVEEDFKLINYISNHGEGRWNCLAR-CAGLKRTGKSCRLRWLN 75 (334)
Q Consensus 29 kKg~WT~EEDe~L~~lV~~~g~~~W~~IA~-~l~~~Rt~~qCr~Rw~~ 75 (334)
....||+||-+++.+++.+||. +|..|++ .|+ +|+..+|..-|..
T Consensus 7 ~~~~WT~eE~~~Fe~~l~~yGK-df~~I~~~~v~-~Kt~~~~v~fYY~ 52 (70)
T 2crg_A 7 GMEEWSASEACLFEEALEKYGK-DFNDIRQDFLP-WKSLTSIIEYYYM 52 (70)
T ss_dssp SSCCCCHHHHHHHHHHHHHTCS-CHHHHHHTTCS-SSCHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhCc-cHHHHHHHHcC-CCCHHHHHHHHHh
Confidence 3468999999999999999998 9999999 588 9999999987753
No 85
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=97.26 E-value=0.0002 Score=56.57 Aligned_cols=47 Identities=17% Similarity=0.328 Sum_probs=41.3
Q ss_pred cCCCCHHHHHHHHHHHHHhCC--CChHHHHhhhCCccChhhhhhhhhccc
Q 019911 30 RGPWTVEEDFKLINYISNHGE--GRWNCLARCAGLKRTGKSCRLRWLNYL 77 (334)
Q Consensus 30 Kg~WT~EEDe~L~~lV~~~g~--~~W~~IA~~l~~~Rt~~qCr~Rw~~~L 77 (334)
--.||.|||..|+..+++.|. ..|..||+.|+ +|++.|+++||+.++
T Consensus 33 VvlWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~-Nks~nqV~~RFq~Lm 81 (95)
T 1ug2_A 33 VVLWTREADRVILTMCQEQGAQPHTFSVISQQLG-NKTPVEVSHRFRELM 81 (95)
T ss_dssp CSSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHS-SCCHHHHHHHHHHHH
T ss_pred EEEeccccCHHHHHHHHhcCCChhHHHHHHHHHc-cCCHHHHHHHHHHHH
Confidence 346999999999999999874 36999999998 999999999998743
No 86
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=97.25 E-value=9.1e-05 Score=57.55 Aligned_cols=49 Identities=24% Similarity=0.510 Sum_probs=40.3
Q ss_pred CcCCCCHHHHHHHHHHHHHhCCC---------ChHHHHhhh---CCccChhhhhhhhhccc
Q 019911 29 RRGPWTVEEDFKLINYISNHGEG---------RWNCLARCA---GLKRTGKSCRLRWLNYL 77 (334)
Q Consensus 29 kKg~WT~EEDe~L~~lV~~~g~~---------~W~~IA~~l---~~~Rt~~qCr~Rw~~~L 77 (334)
+...||.+|-.+|+++....... .|..||..| |..|++.||+.+|.++.
T Consensus 3 R~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~ 63 (86)
T 2ebi_A 3 RAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLL 63 (86)
T ss_dssp CSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 56789999999999999753211 599999876 46799999999998865
No 87
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=97.20 E-value=0.00031 Score=54.49 Aligned_cols=50 Identities=14% Similarity=0.353 Sum_probs=41.6
Q ss_pred CCCCCCHHHHHHHHHHHHHhCC----------ChhHHhhhC----CCCCHHHHHHHHHHhhhHH
Q 019911 82 RRGNITLEEQLMILELHSRWGN----------RWSKIAQHL----PGRTDNEIKNYWRTRVQKH 131 (334)
Q Consensus 82 krg~WT~EED~~Ll~lv~~~G~----------~W~~IAk~l----pgRT~~qcrnRW~~~lr~~ 131 (334)
+...||.+|-..||++..++.. .|..||..| -.||+.||+.+|.++.+..
T Consensus 3 R~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~k~Y 66 (86)
T 2ebi_A 3 RAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLLKEF 66 (86)
T ss_dssp CSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHH
Confidence 4568999999999999976321 499999986 3699999999999988764
No 88
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=97.04 E-value=0.0038 Score=55.62 Aligned_cols=105 Identities=15% Similarity=0.136 Sum_probs=69.7
Q ss_pred CCCcCCCCHHHHHHHHHHHHHhC--CCChHHHHhhhCC-ccChhhhhh-------hhhccc-------------------
Q 019911 27 DLRRGPWTVEEDFKLINYISNHG--EGRWNCLARCAGL-KRTGKSCRL-------RWLNYL------------------- 77 (334)
Q Consensus 27 ~lkKg~WT~EEDe~L~~lV~~~g--~~~W~~IA~~l~~-~Rt~~qCr~-------Rw~~~L------------------- 77 (334)
.-....||..|-..|++++.+|| .++|..|+....+ +++...+.. ++...+
T Consensus 4 ~~~~~~~t~~E~r~fira~~kfG~~~~r~~~I~~da~L~~Ks~~~v~~y~~~f~~~c~~~~~~~~~~~~~~~~~~~~~~~ 83 (211)
T 4b4c_A 4 RENIKGFSDAEIRRFIKSYKKFGGPLERLDAIARDAELVDKSETDLRRLGELVHNGCIKALKDSSSGTERTGGRLGKVKG 83 (211)
T ss_dssp ----CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTTCTTSCHHHHHHHHHHHHHHHHHHHC-----------------C
T ss_pred cccCCCCCHHHHHHHHHHHHHHCCchhHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccc
Confidence 34467899999999999999999 5689999875321 455544321 110000
Q ss_pred -------------------------C--------------------CCCCCCCCCHHHHHHHHHHHHHhC-CChhHHhh-
Q 019911 78 -------------------------R--------------------PDVRRGNITLEEQLMILELHSRWG-NRWSKIAQ- 110 (334)
Q Consensus 78 -------------------------~--------------------p~lkrg~WT~EED~~Ll~lv~~~G-~~W~~IAk- 110 (334)
. +......||++||..||..+.+|| ++|..|-.
T Consensus 84 ~~~~~~~v~~nA~~il~R~~~l~~L~~~v~~~~~~~~~~~i~~~~~~~~~~~~W~~~~D~~LL~Gi~k~G~g~w~~Ir~D 163 (211)
T 4b4c_A 84 PTFRISGVQVNAKLVISHEEELIPLHKSIPSDPEERKQYTIPCHTKAAHFDIDWGKEDDSNLLIGIYEYGYGSWEMIKMD 163 (211)
T ss_dssp CEEEETTEEEEHHHHHHHHHHHHHHHHHSCSSHHHHHTCCCCSCCCCCCSSSCCCHHHHHHHHHHHHHHCTTCHHHHHHC
T ss_pred hhhhhcccchhHHHHHHhHHHHHHHHHHHHhchhhHHHcCcCCCCCCCCCCCCccHHHHHHHHHHHHHHCcCcHHHHHhC
Confidence 0 000123599999999999999999 89999965
Q ss_pred -hC------------CCCCHHHHHHHHHHhhhHH
Q 019911 111 -HL------------PGRTDNEIKNYWRTRVQKH 131 (334)
Q Consensus 111 -~l------------pgRT~~qcrnRW~~~lr~~ 131 (334)
.| ..++...+..|...+|+-.
T Consensus 164 ~~l~~~~k~~~~~~~k~p~a~~L~rR~~~Ll~~l 197 (211)
T 4b4c_A 164 PDLSLTHKILPDDPDKKPQAKQLQTRADYLIKLL 197 (211)
T ss_dssp SSSSCTTTSSCSSTTSSCCHHHHHHHHHHHHHHH
T ss_pred hhcCccccccccccccCCChHHHHHHHHHHHHHH
Confidence 21 1245667888877776644
No 89
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=96.86 E-value=0.0066 Score=59.29 Aligned_cols=105 Identities=21% Similarity=0.230 Sum_probs=79.9
Q ss_pred CCCHHHHHHHHHHHHHhCCCChHHHHhhhCCccChhhhhh-------hhhcc----------------------------
Q 019911 32 PWTVEEDFKLINYISNHGEGRWNCLARCAGLKRTGKSCRL-------RWLNY---------------------------- 76 (334)
Q Consensus 32 ~WT~EEDe~L~~lV~~~g~~~W~~IA~~l~~~Rt~~qCr~-------Rw~~~---------------------------- 76 (334)
.||..+=..++.++.+||..+-..||..|+.+.+...++. ||..+
T Consensus 125 ~WnrrDF~~FI~a~~kyGR~d~~~IA~ev~~~Kt~eEV~~Y~~vFw~Ry~Ei~d~erii~~IEkgE~ki~r~~~~~~~L~ 204 (374)
T 2y9y_A 125 NWNKLEFRKFITVSGKYGRNSIQAIARELAPGKTLEEVRAYAKAFWSNIERIEDYEKYLKIIENEEEKIKRVKMQQEALR 204 (374)
T ss_dssp CSCHHHHHHHHHHHHHHCTTCHHHHHSSCCCSSSHHHHHHHHHHHHHTCSSCSCCTTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHhCHhHHHHHHHHHccCCCHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5999999999999999999899999999964677766641 11110
Q ss_pred ------------c---CCCC--CCCCCCHHHHHHHHHHHHHhCC----ChhHHhhh------------CCCCCHHHHHHH
Q 019911 77 ------------L---RPDV--RRGNITLEEQLMILELHSRWGN----RWSKIAQH------------LPGRTDNEIKNY 123 (334)
Q Consensus 77 ------------L---~p~l--krg~WT~EED~~Ll~lv~~~G~----~W~~IAk~------------lpgRT~~qcrnR 123 (334)
| .+.- +...||+|||+.||-++.+||- .|..|-.. +..||...|..|
T Consensus 205 ~Ki~~y~~P~~~L~i~y~~~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwF~kSRT~~EL~rR 284 (374)
T 2y9y_A 205 RKLSEYKNPFFDLKLKHPPSSNNKRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEIRDCPLFELDFYFRSRTPVELARR 284 (374)
T ss_dssp HHHTTCSSHHHHCCCSSCCCCSSCCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHCSGGGSCHHHHTCCHHHHHHH
T ss_pred HHHHHccCCHHHceeccCCCCCCCCccCHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCcchhhhHHHhcCCHHHHHHH
Confidence 0 0111 3457999999999999999994 59999432 367999999999
Q ss_pred HHHhhhHHhhhcc
Q 019911 124 WRTRVQKHAKQLK 136 (334)
Q Consensus 124 W~~~lr~~~kk~~ 136 (334)
...+++-..|...
T Consensus 285 c~tLi~~IeKE~~ 297 (374)
T 2y9y_A 285 GNTLLQCLEKEFN 297 (374)
T ss_dssp HHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHhc
Confidence 9999988766644
No 90
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=95.77 E-value=0.00023 Score=53.31 Aligned_cols=46 Identities=15% Similarity=0.249 Sum_probs=40.3
Q ss_pred CCCCHHHHHHHHHHHHHhCC--CChHHHHhhhCCccChhhhhhhhhcccC
Q 019911 31 GPWTVEEDFKLINYISNHGE--GRWNCLARCAGLKRTGKSCRLRWLNYLR 78 (334)
Q Consensus 31 g~WT~EEDe~L~~lV~~~g~--~~W~~IA~~l~~~Rt~~qCr~Rw~~~L~ 78 (334)
-.||.|||..|+..+++.|. .-|..||..| +|++.|+..||+.++.
T Consensus 15 vlWTReeDR~IL~~cq~~G~s~~tfa~iA~~L--nks~~QV~~RF~~Lm~ 62 (70)
T 2lr8_A 15 ILWTRNDDRVILLECQKRGPSSKTFAYLAAKL--DKNPNQVSERFQQLMK 62 (70)
Confidence 36999999999999999885 3699999988 5999999999988654
No 91
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=94.92 E-value=0.03 Score=44.45 Aligned_cols=51 Identities=18% Similarity=0.225 Sum_probs=42.9
Q ss_pred CCCcCCCCHHHHHHHHHHHHHhCCCChHHHHhhhC----CccChhhhhhhhhcccC
Q 019911 27 DLRRGPWTVEEDFKLINYISNHGEGRWNCLARCAG----LKRTGKSCRLRWLNYLR 78 (334)
Q Consensus 27 ~lkKg~WT~EEDe~L~~lV~~~g~~~W~~IA~~l~----~~Rt~~qCr~Rw~~~L~ 78 (334)
-++-..||.||...|.+++++|.- +|.-|+.... ..|+..+.++||..+..
T Consensus 27 ~L~~~~WT~eETd~LfdLc~~fdl-Rw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~ 81 (93)
T 4iej_A 27 YLHDDAWTKAETDHLFDLSRRFDL-RFVVIHDRYDHQQFKKRSVEDLKERYYHICA 81 (93)
T ss_dssp HTCBTTBCHHHHHHHHHHHHHTTT-CHHHHHHHCCTTTSCCCCHHHHHHHHHHHHH
T ss_pred HhCCCCCCHHHHHHHHHHHHHcCC-CeEEEeeccccCCCCCCCHHHHHHHHHHHHH
Confidence 345578999999999999999998 9999998763 26999999999987644
No 92
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=94.54 E-value=0.12 Score=38.20 Aligned_cols=48 Identities=17% Similarity=-0.003 Sum_probs=40.8
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCC---hhHHhhhC--CCCCHHHHHHHHHHhh
Q 019911 81 VRRGNITLEEQLMILELHSRWGNR---WSKIAQHL--PGRTDNEIKNYWRTRV 128 (334)
Q Consensus 81 lkrg~WT~EED~~Ll~lv~~~G~~---W~~IAk~l--pgRT~~qcrnRW~~~l 128 (334)
..+-.||+|...+++++|..+|.. +..|-+.| +|.|..+|+.|...|.
T Consensus 5 k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKYR 57 (64)
T 1irz_A 5 KPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFR 57 (64)
T ss_dssp CSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHHH
T ss_pred CCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence 346689999999999999999943 78998876 7999999999887654
No 93
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=92.23 E-value=0.14 Score=45.20 Aligned_cols=30 Identities=27% Similarity=0.420 Sum_probs=27.0
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCChHHHHhh
Q 019911 30 RGPWTVEEDFKLINYISNHGEGRWNCLARC 59 (334)
Q Consensus 30 Kg~WT~EEDe~L~~lV~~~g~~~W~~IA~~ 59 (334)
...||.+||..|+..|.+||.++|..|-.-
T Consensus 134 ~~~W~~~~D~~LL~Gi~k~G~g~w~~Ir~D 163 (211)
T 4b4c_A 134 DIDWGKEDDSNLLIGIYEYGYGSWEMIKMD 163 (211)
T ss_dssp SSCCCHHHHHHHHHHHHHHCTTCHHHHHHC
T ss_pred CCCccHHHHHHHHHHHHHHCcCcHHHHHhC
Confidence 456999999999999999999999999663
No 94
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=91.77 E-value=0.32 Score=35.93 Aligned_cols=50 Identities=18% Similarity=0.181 Sum_probs=39.3
Q ss_pred CCCcCCCCHHHHHHHHHHHHHhCCCC--hHHHHhhhCC-ccChhhhhhhhhcc
Q 019911 27 DLRRGPWTVEEDFKLINYISNHGEGR--WNCLARCAGL-KRTGKSCRLRWLNY 76 (334)
Q Consensus 27 ~lkKg~WT~EEDe~L~~lV~~~g~~~--W~~IA~~l~~-~Rt~~qCr~Rw~~~ 76 (334)
...+-.||+|.-++++++|.+.|..+ +..|.+.|+. +.|..++.-+.+.|
T Consensus 4 ~k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKY 56 (64)
T 1irz_A 4 KKPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKF 56 (64)
T ss_dssp CCSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHH
T ss_pred CCCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 45678999999999999999999532 7899998863 56777777665543
No 95
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=90.92 E-value=0.39 Score=45.65 Aligned_cols=48 Identities=17% Similarity=0.291 Sum_probs=42.5
Q ss_pred CCCCHHHHHHHHHHHHHhC-CChhHHhhhCCCCCHHHHHHHHHHhhhHH
Q 019911 84 GNITLEEQLMILELHSRWG-NRWSKIAQHLPGRTDNEIKNYWRTRVQKH 131 (334)
Q Consensus 84 g~WT~EED~~Ll~lv~~~G-~~W~~IAk~lpgRT~~qcrnRW~~~lr~~ 131 (334)
+.||..+...++.++.+|| ..|..||..++|+|...|+.+......+.
T Consensus 111 ~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~~Kt~eEV~~Y~~vFw~ry 159 (304)
T 1ofc_X 111 TAWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEYNAVFWERC 159 (304)
T ss_dssp TTCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHHHHHHHHHHG
T ss_pred cccCHHHHHHHHHHHHHhCHHHHHHHHHHhcCCCHHHHHHHHHHHHHhH
Confidence 4799999999999999999 57999999999999999988777666543
No 96
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=90.68 E-value=0.17 Score=47.38 Aligned_cols=28 Identities=36% Similarity=0.585 Sum_probs=26.0
Q ss_pred CCCCHHHHHHHHHHHHHhCCCChHHHHh
Q 019911 31 GPWTVEEDFKLINYISNHGEGRWNCLAR 58 (334)
Q Consensus 31 g~WT~EEDe~L~~lV~~~g~~~W~~IA~ 58 (334)
..|+.+||..|+..|.+||.|+|..|-.
T Consensus 169 c~W~~~dD~~LLvGIykyGyG~We~Ir~ 196 (270)
T 2xb0_X 169 SNWTKEEDEKLLIGVFKYGYGSWTQIRD 196 (270)
T ss_dssp SCCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCcChHHHHHHHHHHHHHcCCcHHHHhc
Confidence 4599999999999999999999999965
No 97
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=85.62 E-value=0.53 Score=43.99 Aligned_cols=26 Identities=31% Similarity=0.466 Sum_probs=24.4
Q ss_pred CCCHHHHHHHHHHHHHhC-CChhHHhh
Q 019911 85 NITLEEQLMILELHSRWG-NRWSKIAQ 110 (334)
Q Consensus 85 ~WT~EED~~Ll~lv~~~G-~~W~~IAk 110 (334)
.|+.+||..|+..|.+|| +.|..|..
T Consensus 170 ~W~~~dD~~LLvGIykyGyG~We~Ir~ 196 (270)
T 2xb0_X 170 NWTKEEDEKLLIGVFKYGYGSWTQIRD 196 (270)
T ss_dssp CCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CcChHHHHHHHHHHHHHcCCcHHHHhc
Confidence 599999999999999999 89999965
No 98
>2rq5_A Protein jumonji; developmental protein, nucleus, repressor, transcription, transcription regulation; NMR {Mus musculus}
Probab=78.73 E-value=1.8 Score=35.60 Aligned_cols=57 Identities=19% Similarity=0.248 Sum_probs=40.1
Q ss_pred HHHHHHHHhC-------CCChHHHHhhhCCccCh----hhhhhhhhcccCCCCCCCCCCHHHHHHHHHHHH
Q 019911 40 KLINYISNHG-------EGRWNCLARCAGLKRTG----KSCRLRWLNYLRPDVRRGNITLEEQLMILELHS 99 (334)
Q Consensus 40 ~L~~lV~~~g-------~~~W~~IA~~l~~~Rt~----~qCr~Rw~~~L~p~lkrg~WT~EED~~Ll~lv~ 99 (334)
+|..+|.+.| ...|.+||..|+...+. ...+..|.++|.+-- ..+++|-..|.+-|.
T Consensus 46 ~Ly~~V~~~GG~~~Vt~~k~W~~Va~~lg~p~~~~sa~~~Lr~~Y~k~L~~YE---~~~~~e~~~l~~~v~ 113 (121)
T 2rq5_A 46 CFFRLINEMGGMQQVTDLKKWNKLADMLRIPKTAQDRLAKLQEAYCQYLLSYD---SLSPEEHRRLEKEVL 113 (121)
T ss_dssp HHHHHHHHTTSHHHHHHTTCHHHHHHHTCCCTTCSSHHHHHHHHHHTTHHHHH---HCCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCcHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHhHHHH---CcCHHHHhhHHHHHH
Confidence 4455555554 23799999999865433 466788999988732 377899999887765
No 99
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=72.93 E-value=2.8 Score=40.83 Aligned_cols=32 Identities=13% Similarity=0.155 Sum_probs=28.3
Q ss_pred CcCCCCHHHHHHHHHHHHHhCC---CChHHHHhhh
Q 019911 29 RRGPWTVEEDFKLINYISNHGE---GRWNCLARCA 60 (334)
Q Consensus 29 kKg~WT~EEDe~L~~lV~~~g~---~~W~~IA~~l 60 (334)
++..||.+||..|+-++.+||. ++|.+|-..+
T Consensus 227 k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~I 261 (374)
T 2y9y_A 227 NKRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEI 261 (374)
T ss_dssp SCCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHH
T ss_pred CCCccCHHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 4567999999999999999998 8999996654
No 100
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=67.54 E-value=3.4 Score=33.33 Aligned_cols=39 Identities=15% Similarity=0.303 Sum_probs=30.8
Q ss_pred HHHHHHHHhC-------CCChHHHHhhhCCccChhhhhhhhhcccCC
Q 019911 40 KLINYISNHG-------EGRWNCLARCAGLKRTGKSCRLRWLNYLRP 79 (334)
Q Consensus 40 ~L~~lV~~~g-------~~~W~~IA~~l~~~Rt~~qCr~Rw~~~L~p 79 (334)
+|..+|.+.| ...|..||..|+... +..++..|.++|.|
T Consensus 53 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~-~~~Lr~~Y~k~L~~ 98 (116)
T 2li6_A 53 YLYMLVQKFGGADQVTRTQQWSMVAQRLQISD-YQQLESIYFRILLP 98 (116)
T ss_dssp HHHHHHHHHTSHHHHHHTTCHHHHHHHHTSCC-TTHHHHHHHHHHSH
T ss_pred HHHHHHHHhcCHHHccccCcHHHHHHHhCCCh-HHHHHHHHHHHHHH
Confidence 6778887776 237999999999544 78888889888875
No 101
>2kk0_A AT-rich interactive domain-containing protein 3A; DEAD ringer, AT-rich interaction domain, NESG, ARID, cytopla binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=62.68 E-value=7.8 Score=32.50 Aligned_cols=60 Identities=18% Similarity=0.355 Sum_probs=39.3
Q ss_pred HHHHHHHHhC-------CCChHHHHhhhCCccC----hhhhhhhhhcccCC--CCCCCCCCHHHHHHHHHHHH
Q 019911 40 KLINYISNHG-------EGRWNCLARCAGLKRT----GKSCRLRWLNYLRP--DVRRGNITLEEQLMILELHS 99 (334)
Q Consensus 40 ~L~~lV~~~g-------~~~W~~IA~~l~~~Rt----~~qCr~Rw~~~L~p--~lkrg~WT~EED~~Ll~lv~ 99 (334)
+|..+|.+.| ...|.+||..|+...+ ...++..|.++|.| ...+|.=.++|-..-++--+
T Consensus 68 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~tsa~~~Lk~~Y~k~L~~yE~~~~g~~~p~~~~~~~~~~~ 140 (145)
T 2kk0_A 68 MLYVLVTEKGGLVEVINKKLWREITKGLNLPTSITSAAFTLRTQYMKYLYPYECEKRGLSNPNELQAAIDSNR 140 (145)
T ss_dssp HHHHHHHHHTCHHHHHHHTCHHHHHHHTTCCTTSTTHHHHHHHHHHHHSSHHHHHHTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhhc
Confidence 5666776665 1379999999985442 45678889888876 33456666666554444333
No 102
>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical, structural genomics, structural genomics consortium, SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A
Probab=62.21 E-value=4.9 Score=32.45 Aligned_cols=41 Identities=20% Similarity=0.412 Sum_probs=29.3
Q ss_pred HHHHHHHHHhC-------CCChHHHHhhhCCccC---hhhhhhhhhcccCC
Q 019911 39 FKLINYISNHG-------EGRWNCLARCAGLKRT---GKSCRLRWLNYLRP 79 (334)
Q Consensus 39 e~L~~lV~~~g-------~~~W~~IA~~l~~~Rt---~~qCr~Rw~~~L~p 79 (334)
-+|..+|.+.| ...|.+||..|+...+ ..+.+..|.++|.|
T Consensus 43 ~~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~a~~~Lk~~Y~k~L~~ 93 (117)
T 2jrz_A 43 YSLSKIVVEEGGYEAICKDRRWARVAQRLNYPPGKNIGSLLRSHYERIVYP 93 (117)
T ss_dssp HHHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCTTCTHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHHccCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHH
Confidence 36778887776 2379999999985443 45567778877764
No 103
>1ig6_A MRF-2, modulator recognition factor 2; DNA binding protein, DNA-binding motif, protein-DNA interaction; NMR {Homo sapiens} SCOP: a.4.3.1 PDB: 2oeh_A
Probab=60.66 E-value=6 Score=31.27 Aligned_cols=41 Identities=12% Similarity=0.292 Sum_probs=29.8
Q ss_pred HHHHHHHHHhC-------CCChHHHHhhhCCccC----hhhhhhhhhcccCC
Q 019911 39 FKLINYISNHG-------EGRWNCLARCAGLKRT----GKSCRLRWLNYLRP 79 (334)
Q Consensus 39 e~L~~lV~~~g-------~~~W~~IA~~l~~~Rt----~~qCr~Rw~~~L~p 79 (334)
-+|..+|.+.| ...|.+||..|+...+ ..+.+..|.++|.+
T Consensus 36 ~~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~s~~~~Lk~~Y~k~L~~ 87 (107)
T 1ig6_A 36 WTMFQAAQKLGGYETITARRQWKHIYDELGGNPGSTSAATCTRRHYERLILP 87 (107)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTHHHHHHHHTCCTTCTTTTTTHHHHHHHHTTT
T ss_pred HHHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHH
Confidence 35777777776 2379999999985442 35677888888876
No 104
>1wxp_A THO complex subunit 1; death domain, structural genomics, nuclear matrix, riken structural genomics/proteomics initiative, RSGI, transport protein; NMR {Homo sapiens}
Probab=60.40 E-value=51 Score=25.86 Aligned_cols=71 Identities=15% Similarity=0.237 Sum_probs=42.3
Q ss_pred HHHHHHHHHhCCChhHHhhhCCCCCHHHHHH----------HHHHhhhHHhhhccCCccchhhhHHHhhhhhhhHHHHHh
Q 019911 92 LMILELHSRWGNRWSKIAQHLPGRTDNEIKN----------YWRTRVQKHAKQLKCDVNSKQFKDTMRYLWMPRLIERIQ 161 (334)
Q Consensus 92 ~~Ll~lv~~~G~~W~~IAk~lpgRT~~qcrn----------RW~~~lr~~~kk~~~~~~~~~~~~~~k~~~~p~l~~~i~ 161 (334)
..|..+....|..|..+|++| |=+..+|.. +-..+|+.=..+.+....-..+...++..-...+.+.+.
T Consensus 19 ~~~~~ia~~lg~~Wk~LAr~L-g~~~~~I~~ie~~~~~~~eq~~~mL~~W~~r~G~~AT~~~L~~AL~~~~~~dvae~l~ 97 (110)
T 1wxp_A 19 EQIEVFANKLGEQWKILAPYL-EMKDSEIRQIECDSEDMKMRAKQLLVAWQDQEGVHATPENLINALNKSGLSDLAESLT 97 (110)
T ss_dssp HHHHHHHHHHTTTHHHHTTTT-TCCHHHHHHHHHHCSSHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHh-CCCHHHHHHHHHcCCCHHHHHHHHHHHHHHhhCcCcHHHHHHHHHHHcCcHHHHHHHH
Confidence 345555667799999999998 555555433 334444443333333344556666666666666667776
Q ss_pred hh
Q 019911 162 AN 163 (334)
Q Consensus 162 ~~ 163 (334)
..
T Consensus 98 ~~ 99 (110)
T 1wxp_A 98 ND 99 (110)
T ss_dssp CC
T ss_pred HH
Confidence 53
No 105
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=57.08 E-value=56 Score=26.51 Aligned_cols=66 Identities=15% Similarity=0.083 Sum_probs=42.3
Q ss_pred CCCCHHHHHHHHHHHHHhCCCChHHHHhhhCCccChhhhhhhhhcc------cCCCCC----CCCCCHHHHHHHHHHHHH
Q 019911 31 GPWTVEEDFKLINYISNHGEGRWNCLARCAGLKRTGKSCRLRWLNY------LRPDVR----RGNITLEEQLMILELHSR 100 (334)
Q Consensus 31 g~WT~EEDe~L~~lV~~~g~~~W~~IA~~l~~~Rt~~qCr~Rw~~~------L~p~lk----rg~WT~EED~~Ll~lv~~ 100 (334)
.+.|.++-..++.++. .|. ....||+.++ .+...+ .||.+. +.+..+ ....++++...|++++.+
T Consensus 24 ~~~s~e~r~~ii~l~~-~G~-s~~~IA~~lg--is~~TV-~rwl~r~~~~G~~~~~~r~gr~~~~~~~~~~~~I~~~~~~ 98 (159)
T 2k27_A 24 RPLPEVVRQRIVDLAH-QGV-RPCDISRQLR--VSHGCV-SKILGRYYETGSIRPGVIGGSKPKVATPKVVEKIGDYKRQ 98 (159)
T ss_dssp CSSCHHHHHHHHHHHH-HTC-CHHHHHHHHT--CCSHHH-HHHHCCSSTTSCCCCCCCCCCCCCCCCTTHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH-cCC-CHHHHHHHHC--cCHHHH-HHHHHHHHhcCCccCCCCCCCCCCCCCHHHHHHHHHHHHH
Confidence 4688888888888884 565 7899999998 443333 334432 222211 234788888888888765
Q ss_pred h
Q 019911 101 W 101 (334)
Q Consensus 101 ~ 101 (334)
.
T Consensus 99 ~ 99 (159)
T 2k27_A 99 N 99 (159)
T ss_dssp C
T ss_pred C
Confidence 3
No 106
>3cz6_A DNA-binding protein RAP1; helical bundle, activator, chromosomal protein, nucleus, phosphoprotein, repressor, telomere; HET: MES; 1.85A {Saccharomyces cerevisiae} PDB: 3owt_A
Probab=55.95 E-value=8.9 Score=33.19 Aligned_cols=26 Identities=27% Similarity=0.441 Sum_probs=21.1
Q ss_pred CCCCCcCCCCHHHHHHH--------HHHHHHhCC
Q 019911 25 DLDLRRGPWTVEEDFKL--------INYISNHGE 50 (334)
Q Consensus 25 ~p~lkKg~WT~EEDe~L--------~~lV~~~g~ 50 (334)
-|.-.+|-||+|+|+.| .++++|||.
T Consensus 109 iP~N~pGIWT~eDDe~L~s~d~~dikrL~kKHG~ 142 (168)
T 3cz6_A 109 PPPNVPGIWTHDDDESLKSNDQEQIRKLVKKHGT 142 (168)
T ss_dssp SCTTCTTCCCHHHHHHHHSCCHHHHHHHHHHHCH
T ss_pred CCCCCCCCCChhhHHHHHcCCHHHHHHHHHHhCH
Confidence 46678999999999987 467788874
No 107
>1c20_A DEAD ringer protein; DNA-binding domain, ARID, AT-rich interaction domain, DNA- binding protein; NMR {Drosophila melanogaster} SCOP: a.4.3.1 PDB: 1kqq_A
Probab=54.67 E-value=5.7 Score=32.52 Aligned_cols=40 Identities=23% Similarity=0.472 Sum_probs=29.4
Q ss_pred HHHHHHHHhCC-------CChHHHHhhhCCccC----hhhhhhhhhcccCC
Q 019911 40 KLINYISNHGE-------GRWNCLARCAGLKRT----GKSCRLRWLNYLRP 79 (334)
Q Consensus 40 ~L~~lV~~~g~-------~~W~~IA~~l~~~Rt----~~qCr~Rw~~~L~p 79 (334)
+|..+|.+.|- ..|.+||..|+...+ ....+..|.++|.|
T Consensus 56 ~Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~sa~~~Lk~~Y~k~L~~ 106 (128)
T 1c20_A 56 ELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYP 106 (128)
T ss_dssp HHHHHHHHHTCHHHHHHHTTHHHHHHHTCCCSSCCSHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHhcCHHHcCccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHH
Confidence 57777777761 379999999985543 45667788888865
No 108
>2eqy_A RBP2 like, jumonji, at rich interactive domain 1B; ARID domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=53.84 E-value=7.5 Score=31.61 Aligned_cols=40 Identities=23% Similarity=0.490 Sum_probs=27.7
Q ss_pred HHHHHHHHhC-------CCChHHHHhhhCCccC---hhhhhhhhhcccCC
Q 019911 40 KLINYISNHG-------EGRWNCLARCAGLKRT---GKSCRLRWLNYLRP 79 (334)
Q Consensus 40 ~L~~lV~~~g-------~~~W~~IA~~l~~~Rt---~~qCr~Rw~~~L~p 79 (334)
+|..+|.+.| ...|.+||..|+.... +...+..|.++|.|
T Consensus 46 ~Ly~~V~~~GG~~~V~~~k~W~~V~~~lg~~~~~~~~~~Lr~~Y~k~L~~ 95 (122)
T 2eqy_A 46 QLNKLVAEEGGFAVVCKDRKWTKIATKMGFAPGKAVGSHIRGHYERILNP 95 (122)
T ss_dssp HHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCSSSHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHccCHHHHcCCCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHH
Confidence 5777787776 2379999999985443 24566677777653
No 109
>2kk0_A AT-rich interactive domain-containing protein 3A; DEAD ringer, AT-rich interaction domain, NESG, ARID, cytopla binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=53.25 E-value=29 Score=28.92 Aligned_cols=42 Identities=17% Similarity=0.310 Sum_probs=31.4
Q ss_pred HHHHHHHHhCC--------ChhHHhhhC--CCC---CHHHHHHHHHHhhhHHhhh
Q 019911 93 MILELHSRWGN--------RWSKIAQHL--PGR---TDNEIKNYWRTRVQKHAKQ 134 (334)
Q Consensus 93 ~Ll~lv~~~G~--------~W~~IAk~l--pgR---T~~qcrnRW~~~lr~~~kk 134 (334)
+|..+|.+.|+ .|..|+..| +.. ....+|..|..+|-+.-..
T Consensus 68 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~tsa~~~Lk~~Y~k~L~~yE~~ 122 (145)
T 2kk0_A 68 MLYVLVTEKGGLVEVINKKLWREITKGLNLPTSITSAAFTLRTQYMKYLYPYECE 122 (145)
T ss_dssp HHHHHHHHHTCHHHHHHHTCHHHHHHHTTCCTTSTTHHHHHHHHHHHHSSHHHHH
T ss_pred HHHHHHHHhCCHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHHHHHHHH
Confidence 47788888875 699999988 332 2568899999988875433
No 110
>2cxy_A BAF250B subunit, HBAF250B; DNA-binding domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Homo sapiens} PDB: 2eh9_A 1ryu_A
Probab=52.70 E-value=6.5 Score=32.07 Aligned_cols=40 Identities=20% Similarity=0.429 Sum_probs=27.9
Q ss_pred HHHHHHHHhC-------CCChHHHHhhhCCccC---hhhhhhhhhcccCC
Q 019911 40 KLINYISNHG-------EGRWNCLARCAGLKRT---GKSCRLRWLNYLRP 79 (334)
Q Consensus 40 ~L~~lV~~~g-------~~~W~~IA~~l~~~Rt---~~qCr~Rw~~~L~p 79 (334)
+|..+|.+.| ...|.+||..|+.... ..+++..|.++|.+
T Consensus 55 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~s~~~~Lk~~Y~k~L~~ 104 (125)
T 2cxy_A 55 RLYVCVKEIGGLAQVNKNKKWRELATNLNVGTSSSAASSLKKQYIQYLFA 104 (125)
T ss_dssp HHHHHHHHHTSHHHHHHHTCHHHHHHHTTSCSSHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHcCCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHH
Confidence 5677777665 2279999999986542 34667777777754
No 111
>1c20_A DEAD ringer protein; DNA-binding domain, ARID, AT-rich interaction domain, DNA- binding protein; NMR {Drosophila melanogaster} SCOP: a.4.3.1 PDB: 1kqq_A
Probab=52.03 E-value=34 Score=27.76 Aligned_cols=43 Identities=14% Similarity=0.236 Sum_probs=32.2
Q ss_pred HHHHHHHHHHhCC--------ChhHHhhhC--CCC---CHHHHHHHHHHhhhHHhh
Q 019911 91 QLMILELHSRWGN--------RWSKIAQHL--PGR---TDNEIKNYWRTRVQKHAK 133 (334)
Q Consensus 91 D~~Ll~lv~~~G~--------~W~~IAk~l--pgR---T~~qcrnRW~~~lr~~~k 133 (334)
--+|..+|.+.|+ .|..|+..| +.. ....+|..|..+|-+--.
T Consensus 54 L~~Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~sa~~~Lk~~Y~k~L~~yE~ 109 (128)
T 1c20_A 54 LYELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYPYEC 109 (128)
T ss_dssp HHHHHHHHHHHTCHHHHHHHTTHHHHHHHTCCCSSCCSHHHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHhcCHHHcCccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHHH
Confidence 3458888888885 699999988 333 257889999999887533
No 112
>2jxj_A Histone demethylase jarid1A; ARID domain, chromatin regulator, developmental protein, dioxygenase, iron, metal-binding, nucleus, oxidoreductase; NMR {Homo sapiens}
Probab=51.95 E-value=5.7 Score=30.68 Aligned_cols=40 Identities=20% Similarity=0.400 Sum_probs=27.4
Q ss_pred HHHHHHHHhC-------CCChHHHHhhhCCccC---hhhhhhhhhcccCC
Q 019911 40 KLINYISNHG-------EGRWNCLARCAGLKRT---GKSCRLRWLNYLRP 79 (334)
Q Consensus 40 ~L~~lV~~~g-------~~~W~~IA~~l~~~Rt---~~qCr~Rw~~~L~p 79 (334)
+|..+|.+.| ...|.+||..|+...+ ..+.+..|.++|.|
T Consensus 40 ~Ly~~V~~~GG~~~V~~~~~W~~v~~~lg~~~~~~~~~~Lk~~Y~k~L~~ 89 (96)
T 2jxj_A 40 ALSKIVASKGGFEMVTKEKKWSKVGSRLGYLPGKGTGSLLKSHYERILYP 89 (96)
T ss_dssp HHHHHHHHHHTTHHHHHHTTHHHHHHHHTCCSCSCHHHHHHHHHTTTTHH
T ss_pred HHHHHHHHcCCHHHHccCCcHHHHHHHhCCCCcCcHHHHHHHHHHHHHHH
Confidence 5667776664 2379999999985442 34667778777754
No 113
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=51.87 E-value=89 Score=24.85 Aligned_cols=79 Identities=15% Similarity=0.056 Sum_probs=47.8
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCChHHHHhhhCCccChhhhh---hhhhc--ccCCCCC----CCCCCHHHHHHHHHHHHH
Q 019911 30 RGPWTVEEDFKLINYISNHGEGRWNCLARCAGLKRTGKSCR---LRWLN--YLRPDVR----RGNITLEEQLMILELHSR 100 (334)
Q Consensus 30 Kg~WT~EEDe~L~~lV~~~g~~~W~~IA~~l~~~Rt~~qCr---~Rw~~--~L~p~lk----rg~WT~EED~~Ll~lv~~ 100 (334)
....|.++-..++.++. .|. ...+||+.++ .+...++ .||.. .+.+..+ ....++++...|++++.+
T Consensus 30 ~~~~s~e~r~~iv~~~~-~G~-s~~~iA~~lg--is~~TV~rw~~~~~~~G~~~~~~r~gr~~~~~~~~~~~~I~~~~~~ 105 (149)
T 1k78_A 30 GRPLPDVVRQRIVELAH-QGV-RPCDISRQLR--VSHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVEKIAEYKRQ 105 (149)
T ss_dssp TSCCCHHHHHHHHHHHH-TTC-CHHHHHHHHT--CCHHHHHHHHHHHHHHSCCCCCCCCCCCCSSSCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH-cCC-CHHHHHHHHC--cCHHHHHHHHHHHHHcCCCCccCCCCCCCCCCCHHHHHHHHHHHHh
Confidence 35689988888888884 565 6899999998 4443333 23322 1222222 234788888888888876
Q ss_pred hC-CChhHHhhhC
Q 019911 101 WG-NRWSKIAQHL 112 (334)
Q Consensus 101 ~G-~~W~~IAk~l 112 (334)
.. -.-..|+..+
T Consensus 106 ~~~~s~~~i~~~l 118 (149)
T 1k78_A 106 NPTMFAWEIRDRL 118 (149)
T ss_dssp CTTCCHHHHHHHH
T ss_pred CcchhHHHHHHHH
Confidence 43 2223444433
No 114
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=51.07 E-value=12 Score=29.94 Aligned_cols=39 Identities=18% Similarity=0.343 Sum_probs=30.5
Q ss_pred HHHHHHHHhCC--------ChhHHhhhCCCCCHHHHHHHHHHhhhHH
Q 019911 93 MILELHSRWGN--------RWSKIAQHLPGRTDNEIKNYWRTRVQKH 131 (334)
Q Consensus 93 ~Ll~lv~~~G~--------~W~~IAk~lpgRT~~qcrnRW~~~lr~~ 131 (334)
+|..+|.+.|+ .|..|+..|.--.+..+|.+|..+|-+-
T Consensus 53 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~Lr~~Y~k~L~~y 99 (116)
T 2li6_A 53 YLYMLVQKFGGADQVTRTQQWSMVAQRLQISDYQQLESIYFRILLPY 99 (116)
T ss_dssp HHHHHHHHHTSHHHHHHTTCHHHHHHHHTSCCTTHHHHHHHHHHSHH
T ss_pred HHHHHHHHhcCHHHccccCcHHHHHHHhCCChHHHHHHHHHHHHHHH
Confidence 38888888875 6999999873333789999999888764
No 115
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=49.57 E-value=30 Score=23.72 Aligned_cols=44 Identities=18% Similarity=0.117 Sum_probs=32.5
Q ss_pred CCHHHHHHHHHHHHHhCCChhHHhhhCCCCCHHHHHHHHHHhhhHH
Q 019911 86 ITLEEQLMILELHSRWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKH 131 (334)
Q Consensus 86 WT~EED~~Ll~lv~~~G~~W~~IAk~lpgRT~~qcrnRW~~~lr~~ 131 (334)
++ +.+..++.++...|-.+..||..+ |-+...|+.+....+++.
T Consensus 16 L~-~~~r~il~l~~~~g~s~~eIA~~l-gis~~tv~~~~~ra~~~l 59 (70)
T 2o8x_A 16 LT-TDQREALLLTQLLGLSYADAAAVC-GCPVGTIRSRVARARDAL 59 (70)
T ss_dssp SC-HHHHHHHHHHHTSCCCHHHHHHHH-TSCHHHHHHHHHHHHHHH
T ss_pred CC-HHHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 44 445556666667789999999998 778999988776655544
No 116
>2lm1_A Lysine-specific demethylase LID; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Drosophila melanogaster}
Probab=49.25 E-value=7.1 Score=30.74 Aligned_cols=41 Identities=17% Similarity=0.456 Sum_probs=28.2
Q ss_pred HHHHHHHHHhC-------CCChHHHHhhhCCccC---hhhhhhhhhcccCC
Q 019911 39 FKLINYISNHG-------EGRWNCLARCAGLKRT---GKSCRLRWLNYLRP 79 (334)
Q Consensus 39 e~L~~lV~~~g-------~~~W~~IA~~l~~~Rt---~~qCr~Rw~~~L~p 79 (334)
-+|..+|.+.| ...|.+||..|+...+ ..+.+..|.++|.|
T Consensus 47 ~~Ly~~V~~~GG~~~V~~~~~W~~va~~lg~~~~~~~~~~lk~~Y~k~L~~ 97 (107)
T 2lm1_A 47 YTLHRIVQEEGGMEQTTKDRKWAKVANRMQYPSSKSVGATLKAHYERILHP 97 (107)
T ss_dssp HHHHHHHHHHTCHHHHHHHTTHHHHHHHTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHH
Confidence 36777777776 1279999999985443 35666777776654
No 117
>2lm1_A Lysine-specific demethylase LID; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Drosophila melanogaster}
Probab=48.65 E-value=29 Score=27.10 Aligned_cols=39 Identities=13% Similarity=0.344 Sum_probs=28.6
Q ss_pred HHHHHHHHhCC--------ChhHHhhhCCC-CC---HHHHHHHHHHhhhHH
Q 019911 93 MILELHSRWGN--------RWSKIAQHLPG-RT---DNEIKNYWRTRVQKH 131 (334)
Q Consensus 93 ~Ll~lv~~~G~--------~W~~IAk~lpg-RT---~~qcrnRW~~~lr~~ 131 (334)
+|..+|.+.|+ .|..|++.|.- .+ ...+|..|..+|-+-
T Consensus 48 ~Ly~~V~~~GG~~~V~~~~~W~~va~~lg~~~~~~~~~~lk~~Y~k~L~~y 98 (107)
T 2lm1_A 48 TLHRIVQEEGGMEQTTKDRKWAKVANRMQYPSSKSVGATLKAHYERILHPF 98 (107)
T ss_dssp HHHHHHHHHTCHHHHHHHTTHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHHH
Confidence 47777777775 69999999822 22 467888888887654
No 118
>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical, structural genomics, structural genomics consortium, SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A
Probab=47.79 E-value=26 Score=28.09 Aligned_cols=40 Identities=18% Similarity=0.305 Sum_probs=29.4
Q ss_pred HHHHHHHHHhCC--------ChhHHhhhCCC-C-C--HHHHHHHHHHhhhHH
Q 019911 92 LMILELHSRWGN--------RWSKIAQHLPG-R-T--DNEIKNYWRTRVQKH 131 (334)
Q Consensus 92 ~~Ll~lv~~~G~--------~W~~IAk~lpg-R-T--~~qcrnRW~~~lr~~ 131 (334)
-+|..+|.+.|+ .|..|+..|.- . + ...+|.+|..+|-+-
T Consensus 43 ~~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~a~~~Lk~~Y~k~L~~y 94 (117)
T 2jrz_A 43 YSLSKIVVEEGGYEAICKDRRWARVAQRLNYPPGKNIGSLLRSHYERIVYPY 94 (117)
T ss_dssp HHHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCTTCTHHHHHHHHHHHTTHHH
T ss_pred HHHHHHHHHccCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHH
Confidence 348888888885 69999998822 2 1 567899898888764
No 119
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=46.43 E-value=27 Score=24.77 Aligned_cols=45 Identities=13% Similarity=0.257 Sum_probs=31.6
Q ss_pred CCHHHHHHHHHHHHH----hCCChhHHhhhCCCCCHHHHHHHHHHhhhHHh
Q 019911 86 ITLEEQLMILELHSR----WGNRWSKIAQHLPGRTDNEIKNYWRTRVQKHA 132 (334)
Q Consensus 86 WT~EED~~Ll~lv~~----~G~~W~~IAk~lpgRT~~qcrnRW~~~lr~~~ 132 (334)
.++. +..++.+..- .|-.+..||+.+ |-+...|+.+....+++..
T Consensus 11 L~~~-er~il~l~~~l~~~~~~s~~eIA~~l-~is~~tV~~~~~ra~~kLr 59 (73)
T 1ku3_A 11 LSER-EAMVLKMRKGLIDGREHTLEEVGAYF-GVTRERIRQIENKALRKLK 59 (73)
T ss_dssp SCHH-HHHHHHHHHTTTTSSCCCHHHHHHHH-TCCHHHHHHHHHHHHHHHH
T ss_pred CCHH-HHHHHHHHHhcccCCCCCHHHHHHHH-CCCHHHHHHHHHHHHHHHH
Confidence 3444 4445555554 578899999998 8899999887776665543
No 120
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=46.34 E-value=13 Score=31.01 Aligned_cols=44 Identities=18% Similarity=0.174 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHhCCCChHHHHhhhCCccChhhhhhhhhcccCCCC
Q 019911 36 EEDFKLINYISNHGEGRWNCLARCAGLKRTGKSCRLRWLNYLRPDV 81 (334)
Q Consensus 36 EEDe~L~~lV~~~g~~~W~~IA~~l~~~Rt~~qCr~Rw~~~L~p~l 81 (334)
+-|.+|++++++.+.-.|.+||+.+| -+...|+.|..+....++
T Consensus 3 ~~d~~il~~L~~~~~~s~~~la~~lg--~s~~tv~~rl~~L~~~g~ 46 (162)
T 3i4p_A 3 RLDRKILRILQEDSTLAVADLAKKVG--LSTTPCWRRIQKMEEDGV 46 (162)
T ss_dssp HHHHHHHHHHTTCSCSCHHHHHHHHT--CCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHC--cCHHHHHHHHHHHHHCCC
Confidence 45888999999888889999999997 788889888877655543
No 121
>1kkx_A Transcription regulatory protein ADR6; ARID, DNA-binding domain, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.4.3.1 PDB: 1kn5_A
Probab=44.51 E-value=5 Score=32.84 Aligned_cols=39 Identities=15% Similarity=0.303 Sum_probs=28.1
Q ss_pred HHHHHHHHhC-------CCChHHHHhhhCCccChhhhhhhhhcccCC
Q 019911 40 KLINYISNHG-------EGRWNCLARCAGLKRTGKSCRLRWLNYLRP 79 (334)
Q Consensus 40 ~L~~lV~~~g-------~~~W~~IA~~l~~~Rt~~qCr~Rw~~~L~p 79 (334)
+|..+|.+.| ...|.+||..|+... +...+..|.++|.|
T Consensus 52 ~Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~-~~~Lr~~Y~k~L~~ 97 (123)
T 1kkx_A 52 YLYMLVQKFGGADQVTRTQQWSMVAQRLQISD-YQQLESIYFRILLP 97 (123)
T ss_dssp HHHHHHTTTSCHHHHTTSHHHHHHHHHHTCCC-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHhccccccHHHHHHHHCCCh-HHHHHHHHHHHHHH
Confidence 5667776665 226999999998554 77777778777754
No 122
>2cxy_A BAF250B subunit, HBAF250B; DNA-binding domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Homo sapiens} PDB: 2eh9_A 1ryu_A
Probab=43.34 E-value=33 Score=27.74 Aligned_cols=39 Identities=15% Similarity=0.346 Sum_probs=28.4
Q ss_pred HHHHHHHHhCC--------ChhHHhhhC-CCCC---HHHHHHHHHHhhhHH
Q 019911 93 MILELHSRWGN--------RWSKIAQHL-PGRT---DNEIKNYWRTRVQKH 131 (334)
Q Consensus 93 ~Ll~lv~~~G~--------~W~~IAk~l-pgRT---~~qcrnRW~~~lr~~ 131 (334)
+|..+|.+.|+ .|..|++.| ...+ ...+|..|..+|-+-
T Consensus 55 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~s~~~~Lk~~Y~k~L~~y 105 (125)
T 2cxy_A 55 RLYVCVKEIGGLAQVNKNKKWRELATNLNVGTSSSAASSLKKQYIQYLFAF 105 (125)
T ss_dssp HHHHHHHHHTSHHHHHHHTCHHHHHHHTTSCSSHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHcCCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHH
Confidence 47778888775 699999988 2232 457788888877664
No 123
>2yqf_A Ankyrin-1; death domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yvi_A
Probab=42.94 E-value=1.1e+02 Score=23.85 Aligned_cols=75 Identities=9% Similarity=0.176 Sum_probs=47.8
Q ss_pred CHHHHHHHHHHHHHhCCChhHHhhhCCCCCHHHHHH-----------HHHHhhhHHhhhccCCccchhhhHHHhhhhhhh
Q 019911 87 TLEEQLMILELHSRWGNRWSKIAQHLPGRTDNEIKN-----------YWRTRVQKHAKQLKCDVNSKQFKDTMRYLWMPR 155 (334)
Q Consensus 87 T~EED~~Ll~lv~~~G~~W~~IAk~lpgRT~~qcrn-----------RW~~~lr~~~kk~~~~~~~~~~~~~~k~~~~p~ 155 (334)
++.-+..|..+....|..|..+|+.| |=+..+|.. +-..+|+.=..+.+.....+.+...+...-...
T Consensus 14 ~~~~~~~~~~ia~~lg~~Wk~LAr~L-g~s~~~I~~I~~~~p~~~~eq~~~mL~~W~~~~g~~AT~~~L~~aL~~i~r~d 92 (111)
T 2yqf_A 14 TEQAEMKMAVISEHLGLSWAELAREL-QFSVEDINRIRVENPNSLLEQSVALLNLWVIREGQNANMENLYTALQSIDRGE 92 (111)
T ss_dssp SHHHHHHHHHHHHHHTTTHHHHHHHT-TCCHHHHHHHHHHSCSCHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHTTCCH
T ss_pred HhHHHHHHHHHHHHHhhhHHHHHHHc-CCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHcCcHH
Confidence 56667778888888999999999998 655554432 233444433333333445556666666666666
Q ss_pred HHHHHhh
Q 019911 156 LIERIQA 162 (334)
Q Consensus 156 l~~~i~~ 162 (334)
+.+.+..
T Consensus 93 iae~l~~ 99 (111)
T 2yqf_A 93 IVNMLEG 99 (111)
T ss_dssp HHHHHSC
T ss_pred HHHHHHH
Confidence 6666664
No 124
>2eqy_A RBP2 like, jumonji, at rich interactive domain 1B; ARID domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=42.91 E-value=35 Score=27.50 Aligned_cols=39 Identities=18% Similarity=0.315 Sum_probs=27.8
Q ss_pred HHHHHHHHhCC--------ChhHHhhhCCC-CC---HHHHHHHHHHhhhHH
Q 019911 93 MILELHSRWGN--------RWSKIAQHLPG-RT---DNEIKNYWRTRVQKH 131 (334)
Q Consensus 93 ~Ll~lv~~~G~--------~W~~IAk~lpg-RT---~~qcrnRW~~~lr~~ 131 (334)
+|..+|.+.|+ .|..|++.|.- .+ +..+|.+|..+|-+-
T Consensus 46 ~Ly~~V~~~GG~~~V~~~k~W~~V~~~lg~~~~~~~~~~Lr~~Y~k~L~~y 96 (122)
T 2eqy_A 46 QLNKLVAEEGGFAVVCKDRKWTKIATKMGFAPGKAVGSHIRGHYERILNPY 96 (122)
T ss_dssp HHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCSSSHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHccCHHHHcCCCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHHH
Confidence 47778888875 69999998822 22 357788888777654
No 125
>1kkx_A Transcription regulatory protein ADR6; ARID, DNA-binding domain, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.4.3.1 PDB: 1kn5_A
Probab=42.06 E-value=27 Score=28.38 Aligned_cols=40 Identities=18% Similarity=0.359 Sum_probs=30.6
Q ss_pred HHHHHHHhCC--------ChhHHhhhCCCCCHHHHHHHHHHhhhHHhh
Q 019911 94 ILELHSRWGN--------RWSKIAQHLPGRTDNEIKNYWRTRVQKHAK 133 (334)
Q Consensus 94 Ll~lv~~~G~--------~W~~IAk~lpgRT~~qcrnRW~~~lr~~~k 133 (334)
|..+|.+.|+ .|..|++.|.--.+..+|..|..+|-+--.
T Consensus 53 Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~Lr~~Y~k~L~~yE~ 100 (123)
T 1kkx_A 53 LYMLVQKFGGADQVTRTQQWSMVAQRLQISDYQQLESIYFRILLPYER 100 (123)
T ss_dssp HHHHHTTTSCHHHHTTSHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHhccccccHHHHHHHHCCChHHHHHHHHHHHHHHHHH
Confidence 7777777775 599999987322389999999998887543
No 126
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=40.69 E-value=29 Score=24.21 Aligned_cols=41 Identities=10% Similarity=0.160 Sum_probs=29.5
Q ss_pred HHHHHHHHHH----HhCCChhHHhhhCCCCCHHHHHHHHHHhhhHH
Q 019911 90 EQLMILELHS----RWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKH 131 (334)
Q Consensus 90 ED~~Ll~lv~----~~G~~W~~IAk~lpgRT~~qcrnRW~~~lr~~ 131 (334)
.+..++.+.. ..|-.+..||+.+ |-+...|+.+....+++.
T Consensus 9 ~er~il~l~~~l~~~~g~s~~eIA~~l-gis~~tV~~~~~ra~~kL 53 (68)
T 2p7v_B 9 REAKVLRMRFGIDMNTDYTLEEVGKQF-DVTRERIRQIEAKALRKL 53 (68)
T ss_dssp HHHHHHHHHTTTTSSSCCCHHHHHHHH-TCCHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHccCCCCCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 3444555544 3578899999998 889999988777665544
No 127
>2rq5_A Protein jumonji; developmental protein, nucleus, repressor, transcription, transcription regulation; NMR {Mus musculus}
Probab=40.37 E-value=34 Score=27.80 Aligned_cols=79 Identities=14% Similarity=0.206 Sum_probs=49.4
Q ss_pred CCCcCCCCHHHH--HHHHHHHHHhCCCChHHHHhhhCCccChhhhhhhhhcccCCCCCCCCCCHHHHHHHHHHHHHhCC-
Q 019911 27 DLRRGPWTVEED--FKLINYISNHGEGRWNCLARCAGLKRTGKSCRLRWLNYLRPDVRRGNITLEEQLMILELHSRWGN- 103 (334)
Q Consensus 27 ~lkKg~WT~EED--e~L~~lV~~~g~~~W~~IA~~l~~~Rt~~qCr~Rw~~~L~p~lkrg~WT~EED~~Ll~lv~~~G~- 103 (334)
..=+.+|.+.+. +.|.+.+++.|. ....|.. ++ +|.- + --+|..+|.+.|+
T Consensus 4 ~~~~~r~~~~~~Fl~~L~~F~~~rGt-pl~~~P~-i~-gk~l-----------D------------L~~Ly~~V~~~GG~ 57 (121)
T 2rq5_A 4 GSLGRRWGPNVQRLACIKKHLRSQGI-TMDELPL-IG-GCEL-----------D------------LACFFRLINEMGGM 57 (121)
T ss_dssp CCCSSCCCHHHHHHHHHHHHHHHTTC-CCSSCCE-ET-TEEC-----------C------------HHHHHHHHHHTTSH
T ss_pred HHhhHhcCCcHHHHHHHHHHHHHcCC-CCCCCCc-CC-CEec-----------c------------HHHHHHHHHHcCcH
Confidence 344678988765 346666666665 3333332 22 2221 1 2247888888885
Q ss_pred -------ChhHHhhhC--CCCC---HHHHHHHHHHhhhHH
Q 019911 104 -------RWSKIAQHL--PGRT---DNEIKNYWRTRVQKH 131 (334)
Q Consensus 104 -------~W~~IAk~l--pgRT---~~qcrnRW~~~lr~~ 131 (334)
.|..|+..| |.-+ ...+|.+|..+|-+.
T Consensus 58 ~~Vt~~k~W~~Va~~lg~p~~~~sa~~~Lr~~Y~k~L~~Y 97 (121)
T 2rq5_A 58 QQVTDLKKWNKLADMLRIPKTAQDRLAKLQEAYCQYLLSY 97 (121)
T ss_dssp HHHHHTTCHHHHHHHTCCCTTCSSHHHHHHHHHHTTHHHH
T ss_pred HHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHhHHH
Confidence 699999988 4322 467899998888765
No 128
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=38.22 E-value=23 Score=24.80 Aligned_cols=30 Identities=10% Similarity=0.007 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHhCCCChHHHHhhhCCccCh
Q 019911 36 EEDFKLINYISNHGEGRWNCLARCAGLKRTG 66 (334)
Q Consensus 36 EEDe~L~~lV~~~g~~~W~~IA~~l~~~Rt~ 66 (334)
-|.+.|.+++.+++. +..+.|+.+|..|+.
T Consensus 19 ~E~~~i~~aL~~~~g-n~~~aA~~LGisr~t 48 (63)
T 3e7l_A 19 FEKIFIEEKLREYDY-DLKRTAEEIGIDLSN 48 (63)
T ss_dssp HHHHHHHHHHHHTTT-CHHHHHHHHTCCHHH
T ss_pred HHHHHHHHHHHHhCC-CHHHHHHHHCcCHHH
Confidence 477888899988885 899999999965543
No 129
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=38.03 E-value=59 Score=23.99 Aligned_cols=42 Identities=19% Similarity=0.222 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHhCCChhHHhhhCCCCCHHHHHHHHHHhhhHH
Q 019911 89 EEQLMILELHSRWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKH 131 (334)
Q Consensus 89 EED~~Ll~lv~~~G~~W~~IAk~lpgRT~~qcrnRW~~~lr~~ 131 (334)
+.++.++.++...|-.-..||+.| |-+...|+.|....+++.
T Consensus 40 ~~~r~vl~l~~~~g~s~~eIA~~l-gis~~tV~~~l~ra~~~L 81 (92)
T 3hug_A 40 AEHRAVIQRSYYRGWSTAQIATDL-GIAEGTVKSRLHYAVRAL 81 (92)
T ss_dssp HHHHHHHHHHHTSCCCHHHHHHHH-TSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 345556677667788899999998 888999988877655544
No 130
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A*
Probab=36.08 E-value=31 Score=28.85 Aligned_cols=35 Identities=17% Similarity=0.220 Sum_probs=27.1
Q ss_pred HHHHhhhCCccChhhhhhhhhcccCCCCCCCCCCHHHHHHHHH
Q 019911 54 NCLARCAGLKRTGKSCRLRWLNYLRPDVRRGNITLEEQLMILE 96 (334)
Q Consensus 54 ~~IA~~l~~~Rt~~qCr~Rw~~~L~p~lkrg~WT~EED~~Ll~ 96 (334)
..||..+. |+++.+||..+. +. ..+|+||++.|.+
T Consensus 119 ~~vA~~ik-gkt~eeir~~f~------I~-nd~t~eEe~~ir~ 153 (160)
T 2p1m_A 119 QTVADMIK-GKTPEEIRTTFN------IK-NDFTPEEEEEVRR 153 (160)
T ss_dssp HHHHHTTT-TCCHHHHHHHTT------CC-CCCCHHHHHHHHH
T ss_pred HHHHHHHc-CCCHHHHHHHcC------CC-CCCCHHHHHHHHH
Confidence 57888887 999999999762 32 3599999987654
No 131
>2ib1_A Death domain containing membrane protein nradd; apoptosis, NOGO, FADD; NMR {Mus musculus}
Probab=33.71 E-value=66 Score=24.60 Aligned_cols=73 Identities=16% Similarity=0.218 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHhCCChhHHhhhCCCCCHHHHHH------HHHHhhhHHhhhccCCccchhhhHHHhhhhhhhHHHHHh
Q 019911 88 LEEQLMILELHSRWGNRWSKIAQHLPGRTDNEIKN------YWRTRVQKHAKQLKCDVNSKQFKDTMRYLWMPRLIERIQ 161 (334)
Q Consensus 88 ~EED~~Ll~lv~~~G~~W~~IAk~lpgRT~~qcrn------RW~~~lr~~~kk~~~~~~~~~~~~~~k~~~~p~l~~~i~ 161 (334)
.||-.+|+. ....|..|..+|++| |=+...|+. +-..+|+.=..+.+....-..+...++..-..-+.+.+.
T Consensus 5 r~~v~~ll~-~~~~G~dW~~LA~~L-g~~~~~I~~i~~~~~~~~~lL~~W~~r~g~~ATv~~L~~aL~~i~R~Di~~~L~ 82 (91)
T 2ib1_A 5 QEEVQRLLM-MGEPAKGWQELAGHL-GYQAEAVETMACDQMPAYTLLRNWAAQEGNRATLRVLEDALAAIGREDVVQVLS 82 (91)
T ss_dssp HHTTHHHHT-TTCCSSTHHHHHHHH-TCCHHHHHHHTTSSCHHHHHHHHTTSSSSSTTSTTHHHHHHHTTTCHHHHHHHT
T ss_pred HHHHHHHhc-CCCCCccHHHHHHHc-CCCHHHHHHHHhcCcHHHHHHHHHHhccCCCCcHHHHHHHHHHcCHHHHHHHHh
Confidence 466677777 355589999999998 666666654 223344333323222344445555555555555555555
Q ss_pred h
Q 019911 162 A 162 (334)
Q Consensus 162 ~ 162 (334)
.
T Consensus 83 ~ 83 (91)
T 2ib1_A 83 S 83 (91)
T ss_dssp C
T ss_pred c
Confidence 4
No 132
>2jxj_A Histone demethylase jarid1A; ARID domain, chromatin regulator, developmental protein, dioxygenase, iron, metal-binding, nucleus, oxidoreductase; NMR {Homo sapiens}
Probab=33.26 E-value=25 Score=26.90 Aligned_cols=38 Identities=18% Similarity=0.343 Sum_probs=26.3
Q ss_pred HHHHHHHHhCC--------ChhHHhhhC--CCC--CHHHHHHHHHHhhhH
Q 019911 93 MILELHSRWGN--------RWSKIAQHL--PGR--TDNEIKNYWRTRVQK 130 (334)
Q Consensus 93 ~Ll~lv~~~G~--------~W~~IAk~l--pgR--T~~qcrnRW~~~lr~ 130 (334)
+|..+|.+.|+ .|.+|++.| +.- ....+|..|..+|-+
T Consensus 40 ~Ly~~V~~~GG~~~V~~~~~W~~v~~~lg~~~~~~~~~~Lk~~Y~k~L~~ 89 (96)
T 2jxj_A 40 ALSKIVASKGGFEMVTKEKKWSKVGSRLGYLPGKGTGSLLKSHYERILYP 89 (96)
T ss_dssp HHHHHHHHHHTTHHHHHHTTHHHHHHHHTCCSCSCHHHHHHHHHTTTTHH
T ss_pred HHHHHHHHcCCHHHHccCCcHHHHHHHhCCCCcCcHHHHHHHHHHHHHHH
Confidence 37777777764 699999987 221 245778888777654
No 133
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=32.57 E-value=39 Score=27.89 Aligned_cols=43 Identities=9% Similarity=0.013 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHhC-CChhHHhhhCCCCCHHHHHHHHHHhhhHHh
Q 019911 89 EEQLMILELHSRWG-NRWSKIAQHLPGRTDNEIKNYWRTRVQKHA 132 (334)
Q Consensus 89 EED~~Ll~lv~~~G-~~W~~IAk~lpgRT~~qcrnRW~~~lr~~~ 132 (334)
+-|.+|+++.++.| -.|..||+.+ |=+...|+.|++.+.+..+
T Consensus 3 ~~d~~il~~L~~~~~~s~~~la~~l-g~s~~tv~~rl~~L~~~g~ 46 (162)
T 3i4p_A 3 RLDRKILRILQEDSTLAVADLAKKV-GLSTTPCWRRIQKMEEDGV 46 (162)
T ss_dssp HHHHHHHHHHTTCSCSCHHHHHHHH-TCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCC
Confidence 45788899888887 5799999998 8899999999988777654
No 134
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=31.83 E-value=42 Score=28.21 Aligned_cols=44 Identities=20% Similarity=0.273 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHhCCCChHHHHhhhCCccChhhhhhhhhcccCCCC
Q 019911 36 EEDFKLINYISNHGEGRWNCLARCAGLKRTGKSCRLRWLNYLRPDV 81 (334)
Q Consensus 36 EEDe~L~~lV~~~g~~~W~~IA~~l~~~Rt~~qCr~Rw~~~L~p~l 81 (334)
+-|.+|+.++.+.+.-.+.+||+.+| -+...|+.|.....+.++
T Consensus 27 ~~d~~IL~~L~~~~~~s~~eLA~~lg--lS~~tv~~rl~~L~~~G~ 70 (171)
T 2e1c_A 27 EIDKKIIKILQNDGKAPLREISKITG--LAESTIHERIRKLRESGV 70 (171)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHHT--SCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHC--cCHHHHHHHHHHHHHCCC
Confidence 55677888888888779999999997 688888887776654443
No 135
>1umq_A Photosynthetic apparatus regulatory protein; DNA-binding protein, response regulator, DNA binding domain, helix-turn-helix; NMR {Rhodobacter sphaeroides} SCOP: a.4.1.12
Probab=31.65 E-value=48 Score=24.91 Aligned_cols=34 Identities=9% Similarity=-0.124 Sum_probs=26.2
Q ss_pred CCCHHHHHHHHHHHHHhCCCChHHHHhhhCCccCh
Q 019911 32 PWTVEEDFKLINYISNHGEGRWNCLARCAGLKRTG 66 (334)
Q Consensus 32 ~WT~EEDe~L~~lV~~~g~~~W~~IA~~l~~~Rt~ 66 (334)
....-|.+.|.+++++++. +..+.|+.+|..|+.
T Consensus 37 ~l~~~Er~~I~~aL~~~~G-N~s~AA~~LGISR~T 70 (81)
T 1umq_A 37 SADRVRWEHIQRIYEMCDR-NVSETARRLNMHRRT 70 (81)
T ss_dssp CHHHHHHHHHHHHHHHTTS-CHHHHHHHHTSCHHH
T ss_pred hHHHHHHHHHHHHHHHhCC-CHHHHHHHhCCCHHH
Confidence 3445577788899998885 899999999966554
No 136
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=30.54 E-value=76 Score=25.91 Aligned_cols=33 Identities=9% Similarity=0.001 Sum_probs=25.1
Q ss_pred HHhCCChhHHhhhCCCCCHHHHHHHHHHhhhHHh
Q 019911 99 SRWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKHA 132 (334)
Q Consensus 99 ~~~G~~W~~IAk~lpgRT~~qcrnRW~~~lr~~~ 132 (334)
...|-....||+.+ |-+...|+.+....+++..
T Consensus 153 ~~~g~s~~EIA~~l-gis~~tV~~~l~ra~~~Lr 185 (194)
T 1or7_A 153 ELDGLSYEEIAAIM-DCPVGTVRSRIFRAREAID 185 (194)
T ss_dssp HTTCCCHHHHHHHT-TSCHHHHHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHH-CCCHHHHHHHHHHHHHHHH
Confidence 34467899999998 8889999888776665543
No 137
>2jvw_A Uncharacterized protein; solution structure, alpha helical protein, structural GE unknown function, PSI-2, protein structure initiative; NMR {Vibrio fischeri}
Probab=28.33 E-value=31 Score=26.66 Aligned_cols=47 Identities=19% Similarity=0.280 Sum_probs=32.1
Q ss_pred HHHHHHHHHHhCCCChHHHHhhhCCccChhhhhhhhhcccCCCC-------CCCCCCHHHHHHHHHH
Q 019911 38 DFKLINYISNHGEGRWNCLARCAGLKRTGKSCRLRWLNYLRPDV-------RRGNITLEEQLMILEL 97 (334)
Q Consensus 38 De~L~~lV~~~g~~~W~~IA~~l~~~Rt~~qCr~Rw~~~L~p~l-------krg~WT~EED~~Ll~l 97 (334)
+.+|.++|+.|| |..++..+. ..|.. .+|.+ +|.+|-.+.-+.|.-.
T Consensus 18 E~ilt~Lv~~YG---W~~L~~~i~-----I~CF~-----~~PSikSSLKFLRKTpWAR~KVE~lYL~ 71 (88)
T 2jvw_A 18 QKLLTELVEHYG---WEELSYMVN-----INCFK-----KDPSIKSSLKFLRKTDWARERVENIYLK 71 (88)
T ss_dssp HHHHHHHHHHTC---HHHHHHHTT-----SSSTT-----SSCCHHHHHHHHHHSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC---HHHHHhhcc-----cccCC-----CCCchHHHHHHHhcCHhHHHHHHHHHHH
Confidence 468999999997 999988775 22322 24433 5778888877665433
No 138
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=27.92 E-value=1.1e+02 Score=22.73 Aligned_cols=46 Identities=22% Similarity=0.195 Sum_probs=34.2
Q ss_pred CCCCCHHHHHHHHHHHHHhCCChhHHhhhCCCCCHHHHHHHHHHhhhHH
Q 019911 83 RGNITLEEQLMILELHSRWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKH 131 (334)
Q Consensus 83 rg~WT~EED~~Ll~lv~~~G~~W~~IAk~lpgRT~~qcrnRW~~~lr~~ 131 (334)
....|+.|-+.|.-+. .|..-..||..| +-+...|+.+...++++.
T Consensus 27 ~~~Lt~rE~~Vl~l~~--~G~s~~eIA~~L-~iS~~TV~~~~~~i~~Kl 72 (90)
T 3ulq_B 27 QDVLTPRECLILQEVE--KGFTNQEIADAL-HLSKRSIEYSLTSIFNKL 72 (90)
T ss_dssp --CCCHHHHHHHHHHH--TTCCHHHHHHHH-TCCHHHHHHHHHHHHHHT
T ss_pred ccCCCHHHHHHHHHHH--cCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 3467877776665544 788899999998 889999988887766553
No 139
>2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_A
Probab=27.58 E-value=53 Score=26.70 Aligned_cols=32 Identities=16% Similarity=0.032 Sum_probs=24.4
Q ss_pred HHhCCChhHHhhhCCCCCHHHHHHHHHHhhhHH
Q 019911 99 SRWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKH 131 (334)
Q Consensus 99 ~~~G~~W~~IAk~lpgRT~~qcrnRW~~~lr~~ 131 (334)
...|-....||+.+ |-+...|+.+....+++.
T Consensus 148 ~~~g~s~~eIA~~l-gis~~tV~~~l~ra~~~L 179 (184)
T 2q1z_A 148 FFGDLTHRELAAET-GLPLGTIKSRIRLALDRL 179 (184)
T ss_dssp HHSCCSSCCSTTTC-CCCCHHHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 34467889999998 788889988887766554
No 140
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=27.39 E-value=1.2e+02 Score=21.05 Aligned_cols=42 Identities=17% Similarity=0.084 Sum_probs=29.7
Q ss_pred CCHHHHHHHHHHHHHhCCChhHHhhhCCCCCHHHHHHHHHHhhhH
Q 019911 86 ITLEEQLMILELHSRWGNRWSKIAQHLPGRTDNEIKNYWRTRVQK 130 (334)
Q Consensus 86 WT~EED~~Ll~lv~~~G~~W~~IAk~lpgRT~~qcrnRW~~~lr~ 130 (334)
.|+.|-+. +.++ ..|-.-..||+.+ |-+...|+.+....+++
T Consensus 17 L~~~e~~v-l~l~-~~g~s~~eIA~~l-~is~~tV~~~~~r~~~k 58 (79)
T 1x3u_A 17 LSERERQV-LSAV-VAGLPNKSIAYDL-DISPRTVEVHRANVMAK 58 (79)
T ss_dssp HCHHHHHH-HHHH-TTTCCHHHHHHHT-TSCHHHHHHHHHHHHHH
T ss_pred CCHHHHHH-HHHH-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 45555444 4454 6678899999998 77899998877665544
No 141
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=27.36 E-value=2.1e+02 Score=21.90 Aligned_cols=89 Identities=15% Similarity=0.088 Sum_probs=54.0
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCChHHHHhhhCCccChhhhhhhhhcccCC------CCCCCCCCHHHHHHHHHHHHHhCC
Q 019911 30 RGPWTVEEDFKLINYISNHGEGRWNCLARCAGLKRTGKSCRLRWLNYLRP------DVRRGNITLEEQLMILELHSRWGN 103 (334)
Q Consensus 30 Kg~WT~EEDe~L~~lV~~~g~~~W~~IA~~l~~~Rt~~qCr~Rw~~~L~p------~lkrg~WT~EED~~Ll~lv~~~G~ 103 (334)
+...|.++-..++.++ ..|. .-..||+.+| .+...++ ||.+.... .-+....+++++..|+++...-.-
T Consensus 4 ~~~~s~~~r~~i~~~~-~~G~-s~~~ia~~lg--is~~Tv~-r~~~~~~~~g~~~~~gr~~~l~~~~~~~i~~~~~~~~~ 78 (141)
T 1u78_A 4 GSALSDTERAQLDVMK-LLNV-SLHEMSRKIS--RSRHCIR-VYLKDPVSYGTSKRAPRRKALSVRDERNVIRAASNSCK 78 (141)
T ss_dssp SCCCCHHHHHHHHHHH-HTTC-CHHHHHHHHT--CCHHHHH-HHHHSGGGTTCCCCCCCCCSSCHHHHHHHHHHHHHCCC
T ss_pred cccCCHHHHHHHHHHH-HcCC-CHHHHHHHHC--cCHHHHH-HHHHcccccCCcCCCCCCCcCCHHHHHHHHHHHhCCCC
Confidence 3567888888888777 4564 6899999997 4444443 33322111 112235788988888887333223
Q ss_pred ChhHHhhhCCC-CCHHHHHHH
Q 019911 104 RWSKIAQHLPG-RTDNEIKNY 123 (334)
Q Consensus 104 ~W~~IAk~lpg-RT~~qcrnR 123 (334)
.=..|+..|.- -+...|...
T Consensus 79 s~~~i~~~lg~~~s~~tV~r~ 99 (141)
T 1u78_A 79 TARDIRNELQLSASKRTILNV 99 (141)
T ss_dssp CHHHHHHHTTCCSCHHHHHHH
T ss_pred CHHHHHHHHCCCccHHHHHHH
Confidence 45788888722 455566543
No 142
>1eto_A FIS, factor for inversion stimulation; transcriptional activation region, DNA-binding protein, transcription activator; 1.90A {Escherichia coli} SCOP: a.4.1.12 PDB: 1etq_A 1ety_A 1fia_A 3fis_A 3iv5_A* 3jr9_A* 3jra_A* 3jrb_A* 3jrc_A* 3jrd_A* 3jre_A* 3jrf_A* 3jrg_A* 3jrh_A* 3jri_A* 1f36_A 1etv_A 1etk_A 1etx_A 1fip_A ...
Probab=27.27 E-value=71 Score=24.69 Aligned_cols=31 Identities=16% Similarity=-0.067 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHhCCCChHHHHhhhCCccCh
Q 019911 35 VEEDFKLINYISNHGEGRWNCLARCAGLKRTG 66 (334)
Q Consensus 35 ~EEDe~L~~lV~~~g~~~W~~IA~~l~~~Rt~ 66 (334)
.-|.+.|.+++.+++. +..+.|+.+|..|..
T Consensus 57 ~~Er~~I~~aL~~~~g-n~~~AA~~LGIsR~T 87 (98)
T 1eto_A 57 EVEQPLLDMVMQYTLG-NQTRAALMMGINRGT 87 (98)
T ss_dssp HHHHHHHHHHHHHTTT-CHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHHHHhCC-CHHHHHHHhCCCHHH
Confidence 3467778888888875 899999999866553
No 143
>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A*
Probab=26.08 E-value=49 Score=28.07 Aligned_cols=34 Identities=21% Similarity=0.227 Sum_probs=26.8
Q ss_pred HHHHhhhCCccChhhhhhhhhcccCCCCCCCCCCHHHHHHHH
Q 019911 54 NCLARCAGLKRTGKSCRLRWLNYLRPDVRRGNITLEEQLMIL 95 (334)
Q Consensus 54 ~~IA~~l~~~Rt~~qCr~Rw~~~L~p~lkrg~WT~EED~~Ll 95 (334)
..||..+. |+++.+.|..+. +.. -+|+||++.+.
T Consensus 127 ~~vA~~ik-gktpeeiR~~f~------I~n-d~t~eEe~~ir 160 (169)
T 3v7d_A 127 KVVAEMIR-GRSPEEIRRTFN------IVN-DFTPEEEAAIR 160 (169)
T ss_dssp HHHHHHHT-TCCHHHHHHHHT------CCC-CCCHHHHHHHH
T ss_pred HHHHHHHc-CCCHHHHHHHcC------CCC-CCCHHHHHHHH
Confidence 67888887 999999999763 333 59999998764
No 144
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=25.95 E-value=1.1e+02 Score=22.83 Aligned_cols=44 Identities=20% Similarity=0.180 Sum_probs=32.7
Q ss_pred CCCHHHHHHHHHHHHHhCCChhHHhhhCCCCCHHHHHHHHHHhhhHH
Q 019911 85 NITLEEQLMILELHSRWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKH 131 (334)
Q Consensus 85 ~WT~EED~~Ll~lv~~~G~~W~~IAk~lpgRT~~qcrnRW~~~lr~~ 131 (334)
..|+.|-+.|.- + ..|..-..||+.| |-+...|+.|-...+++.
T Consensus 27 ~Lt~~e~~vl~l-~-~~g~s~~eIA~~l-~is~~tV~~~l~r~~~kL 70 (95)
T 3c57_A 27 GLTDQERTLLGL-L-SEGLTNKQIADRM-FLAEKTVKNYVSRLLAKL 70 (95)
T ss_dssp CCCHHHHHHHHH-H-HTTCCHHHHHHHH-TCCHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHH-H-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 466666655554 4 6788899999998 789999988776665544
No 145
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=25.55 E-value=97 Score=22.63 Aligned_cols=41 Identities=15% Similarity=0.180 Sum_probs=28.9
Q ss_pred HHHHHHHHHHH----hCCChhHHhhhCCCCCHHHHHHHHHHhhhHH
Q 019911 90 EQLMILELHSR----WGNRWSKIAQHLPGRTDNEIKNYWRTRVQKH 131 (334)
Q Consensus 90 ED~~Ll~lv~~----~G~~W~~IAk~lpgRT~~qcrnRW~~~lr~~ 131 (334)
.+..++.+..- .|-.+..||..+ |-+...|+.+-...+++.
T Consensus 22 ~er~vl~l~~~l~~~~~~s~~EIA~~l-gis~~tV~~~~~ra~~kL 66 (87)
T 1tty_A 22 REAMVLRMRYGLLDGKPKTLEEVGQYF-NVTRERIRQIEVKALRKL 66 (87)
T ss_dssp HHHHHHHHHHTTTTSSCCCHHHHHHHH-TCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCCCCCHHHHHHHH-CCCHHHHHHHHHHHHHHH
Confidence 34445555544 567899999998 889999988766555444
No 146
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=25.38 E-value=1.1e+02 Score=24.34 Aligned_cols=43 Identities=12% Similarity=0.111 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHhC-CChhHHhhhCCCCCHHHHHHHHHHhhhHHh
Q 019911 89 EEQLMILELHSRWG-NRWSKIAQHLPGRTDNEIKNYWRTRVQKHA 132 (334)
Q Consensus 89 EED~~Ll~lv~~~G-~~W~~IAk~lpgRT~~qcrnRW~~~lr~~~ 132 (334)
+-|.+|+.+..+.| -.+..||+.+ |=+...|+.|.+.+.+..+
T Consensus 9 ~~d~~il~~L~~~~~~s~~ela~~l-g~s~~tv~~~l~~L~~~G~ 52 (151)
T 2dbb_A 9 RVDMQLVKILSENSRLTYRELADIL-NTTRQRIARRIDKLKKLGI 52 (151)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHT-TSCHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCC
Confidence 44667778777777 5799999998 7789999999888776653
No 147
>1g2h_A Transcriptional regulatory protein TYRR homolog; protein structure, , DNA-binding domain, helix- turn-helix motif; NMR {Haemophilus influenzae} SCOP: a.4.1.12
Probab=24.74 E-value=60 Score=22.54 Aligned_cols=33 Identities=18% Similarity=0.031 Sum_probs=26.5
Q ss_pred CCCHHHHHHHHHHHHHhCCCChHHHHhhhCCccCh
Q 019911 32 PWTVEEDFKLINYISNHGEGRWNCLARCAGLKRTG 66 (334)
Q Consensus 32 ~WT~EEDe~L~~lV~~~g~~~W~~IA~~l~~~Rt~ 66 (334)
....-|.+.|.+++.++ ++-.+.|+.+|..|+.
T Consensus 17 ~l~~~Er~~I~~aL~~~--gn~~~aA~~LGIsr~t 49 (61)
T 1g2h_A 17 IIGFYEAQVLKLFYAEY--PSTRKLAQRLGVSHTA 49 (61)
T ss_dssp SCSHHHHHHHHHHHHHS--CSHHHHHHHTTSCTHH
T ss_pred HHHHHHHHHHHHHHHHh--CCHHHHHHHhCCCHHH
Confidence 45567888999999998 4899999999966654
No 148
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=24.22 E-value=1.2e+02 Score=22.00 Aligned_cols=43 Identities=21% Similarity=0.162 Sum_probs=31.7
Q ss_pred CCCHHHHHHHHHHHHHhCCChhHHhhhCCCCCHHHHHHHHHHhhhH
Q 019911 85 NITLEEQLMILELHSRWGNRWSKIAQHLPGRTDNEIKNYWRTRVQK 130 (334)
Q Consensus 85 ~WT~EED~~Ll~lv~~~G~~W~~IAk~lpgRT~~qcrnRW~~~lr~ 130 (334)
..|+.|-+.|.- + ..|..-..||+.+ |-+...|+.+-...+++
T Consensus 21 ~Lt~~e~~vl~l-~-~~g~s~~eIA~~l-~is~~tV~~~l~r~~~k 63 (82)
T 1je8_A 21 QLTPRERDILKL-I-AQGLPNKMIARRL-DITESTVKVHVKHMLKK 63 (82)
T ss_dssp GSCHHHHHHHHH-H-TTTCCHHHHHHHH-TSCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHH-H-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 466766655544 4 5788899999998 78999998877665544
No 149
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=24.04 E-value=1.3e+02 Score=20.59 Aligned_cols=45 Identities=18% Similarity=0.072 Sum_probs=32.7
Q ss_pred CCCCHHHHHHHHHHHHHhCCChhHHhhhCCCCCHHHHHHHHHHhhhHH
Q 019911 84 GNITLEEQLMILELHSRWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKH 131 (334)
Q Consensus 84 g~WT~EED~~Ll~lv~~~G~~W~~IAk~lpgRT~~qcrnRW~~~lr~~ 131 (334)
...|+.|-+.|.- + ..|..-..||+.+ |-+...|+.+....+++.
T Consensus 10 ~~L~~~e~~il~~-~-~~g~s~~eIA~~l-~is~~tV~~~~~~~~~kl 54 (74)
T 1fse_A 10 PLLTKREREVFEL-L-VQDKTTKEIASEL-FISEKTVRNHISNAMQKL 54 (74)
T ss_dssp CCCCHHHHHHHHH-H-TTTCCHHHHHHHH-TSCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHH-H-HcCCCHHHHHHHH-CCCHHHHHHHHHHHHHHH
Confidence 3567777666555 4 5678899999998 779999988776655443
No 150
>2ast_A S-phase kinase-associated protein 1A; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} PDB: 2ass_A* 2e31_B 2e32_B 3l2o_A 1p22_B* 2ovr_A* 2ovp_A 1fqv_B* 2ovq_A*
Probab=23.82 E-value=49 Score=27.48 Aligned_cols=35 Identities=17% Similarity=0.247 Sum_probs=26.5
Q ss_pred HHHHhhhCCccChhhhhhhhhcccCCCCCCCCCCHHHHHHHHH
Q 019911 54 NCLARCAGLKRTGKSCRLRWLNYLRPDVRRGNITLEEQLMILE 96 (334)
Q Consensus 54 ~~IA~~l~~~Rt~~qCr~Rw~~~L~p~lkrg~WT~EED~~Ll~ 96 (334)
..||..+. |+++.++|..+. +. ..+|+||++.+.+
T Consensus 120 ~~va~~i~-gkt~eeir~~f~------I~-~d~t~eEe~~ir~ 154 (159)
T 2ast_A 120 KTVANMIK-GKTPEEIRKTFN------IK-NDFTEEEEAQVRK 154 (159)
T ss_dssp HHHHHHHS-SCCHHHHHHHTT------CC-CCSCTTHHHHHHH
T ss_pred HHHHHHHc-CCCHHHHHHHcC------CC-CCCCHHHHHHHHH
Confidence 46888887 999999999773 32 3589999887543
No 151
>1ntc_A Protein (nitrogen regulation protein (NTRC)); helix-turn-helix, FIS, four-helix bundle, transcription regulation; NMR {Salmonella typhimurium} SCOP: a.4.1.12
Probab=23.67 E-value=48 Score=24.91 Aligned_cols=28 Identities=18% Similarity=0.064 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhCCCChHHHHhhhCCccC
Q 019911 37 EDFKLINYISNHGEGRWNCLARCAGLKRT 65 (334)
Q Consensus 37 EDe~L~~lV~~~g~~~W~~IA~~l~~~Rt 65 (334)
|.+.|.+++.+++. +..+.|+.+|..|+
T Consensus 52 E~~~i~~aL~~~~g-n~~~aA~~LGIsr~ 79 (91)
T 1ntc_A 52 ERTLLTTALRHTQG-HKQEAARLLGWGAA 79 (91)
T ss_dssp HHHHHHHHHHHTTT-CTTHHHHHTTCCHH
T ss_pred HHHHHHHHHHHhCC-CHHHHHHHHCcCHH
No 152
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=23.64 E-value=1.5e+02 Score=22.11 Aligned_cols=66 Identities=20% Similarity=0.199 Sum_probs=40.1
Q ss_pred CCCCHHHHHHHHHHHHHhCCCChHHHHhhhCCccChhhhh---hhhhcc--cCCCC----CCCCCCHHHHHHHHHHHHH
Q 019911 31 GPWTVEEDFKLINYISNHGEGRWNCLARCAGLKRTGKSCR---LRWLNY--LRPDV----RRGNITLEEQLMILELHSR 100 (334)
Q Consensus 31 g~WT~EEDe~L~~lV~~~g~~~W~~IA~~l~~~Rt~~qCr---~Rw~~~--L~p~l----krg~WT~EED~~Ll~lv~~ 100 (334)
.+.+.++-..++.++. .|. .-..||+.++ .+...++ .||... +.+.. +....++++...|++++.+
T Consensus 16 ~~~s~~~r~~i~~~~~-~g~-s~~~ia~~lg--is~~Tv~~w~~~~~~~g~~~~~~~~g~~~~~l~~~~~~~i~~~~~~ 90 (128)
T 1pdn_C 16 RPLPNNIRLKIVEMAA-DGI-RPCVISRQLR--VSHGCVSKILNRYQETGSIRPGVIGGSKPRIATPEIENRIEEYKRS 90 (128)
T ss_dssp SCCCHHHHHHHHHHHH-TTC-CHHHHHHHHT--CCHHHHHHHHHHHHHHCCSSCCCCSCCCCCSSCSTHHHHHHHTTTT
T ss_pred CcCCHHHHHHHHHHHH-cCC-CHHHHHHHHC--cCHHHHHHHHHHHHhhCCcccccCCCCCCCcCCHHHHHHHHHHHHh
Confidence 3688888888888874 565 6889999998 4433332 333321 22221 2234677777777777654
No 153
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=23.24 E-value=1.3e+02 Score=19.81 Aligned_cols=39 Identities=15% Similarity=0.113 Sum_probs=28.9
Q ss_pred HHHHHHHHHHhCCChhHHhhhCCCCCHHHHHHHHHHhhhHH
Q 019911 91 QLMILELHSRWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKH 131 (334)
Q Consensus 91 D~~Ll~lv~~~G~~W~~IAk~lpgRT~~qcrnRW~~~lr~~ 131 (334)
+..++.+ -..|-.-..||..+ |-+...|+.+....+++.
T Consensus 3 e~~vl~l-~~~g~s~~eIA~~l-~is~~tV~~~~~~~~~kl 41 (61)
T 2jpc_A 3 ERQVLKL-IDEGYTNHGISEKL-HISIKTVETHRMNMMRKL 41 (61)
T ss_dssp HHHHHHH-HHTSCCSHHHHHHT-CSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-HHcCCCHHHHHHHh-CCCHHHHHHHHHHHHHHH
Confidence 4455666 35687889999998 889999988777665543
No 154
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=23.12 E-value=95 Score=25.94 Aligned_cols=43 Identities=16% Similarity=0.179 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHhC-CChhHHhhhCCCCCHHHHHHHHHHhhhHHh
Q 019911 89 EEQLMILELHSRWG-NRWSKIAQHLPGRTDNEIKNYWRTRVQKHA 132 (334)
Q Consensus 89 EED~~Ll~lv~~~G-~~W~~IAk~lpgRT~~qcrnRW~~~lr~~~ 132 (334)
+-|.+|+.+..+.| ..+..||+.+ |-+...|+.|.+.+.+..+
T Consensus 27 ~~d~~IL~~L~~~~~~s~~eLA~~l-glS~~tv~~rl~~L~~~G~ 70 (171)
T 2e1c_A 27 EIDKKIIKILQNDGKAPLREISKIT-GLAESTIHERIRKLRESGV 70 (171)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHH-TSCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCC
Confidence 45677888888777 5799999998 7899999999888776553
No 155
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=22.83 E-value=56 Score=26.26 Aligned_cols=39 Identities=18% Similarity=0.180 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHhCCCChHHHHhhhCCccChhhhhhhhhcc
Q 019911 36 EEDFKLINYISNHGEGRWNCLARCAGLKRTGKSCRLRWLNY 76 (334)
Q Consensus 36 EEDe~L~~lV~~~g~~~W~~IA~~l~~~Rt~~qCr~Rw~~~ 76 (334)
+-|.+|+.++.+.+.-.+.+||+.+| -+...|+.|....
T Consensus 9 ~~d~~il~~L~~~~~~s~~ela~~lg--~s~~tv~~~l~~L 47 (151)
T 2dbb_A 9 RVDMQLVKILSENSRLTYRELADILN--TTRQRIARRIDKL 47 (151)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHTT--SCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHC--cCHHHHHHHHHHH
Confidence 44667778888888779999999998 5666677665554
No 156
>3eyi_A Z-DNA-binding protein 1; alternative splicing, DNA-binding, polymorphism, DNA binding protein/Z-DNA complex, DNA binding protein/DNA complex; 1.45A {Homo sapiens} PDB: 2l4m_A
Probab=22.08 E-value=79 Score=23.53 Aligned_cols=37 Identities=19% Similarity=0.406 Sum_probs=30.2
Q ss_pred CCHHHHHHHHHHHHHhCCCChHHHHhhhCCccChhhhh
Q 019911 33 WTVEEDFKLINYISNHGEGRWNCLARCAGLKRTGKSCR 70 (334)
Q Consensus 33 WT~EEDe~L~~lV~~~g~~~W~~IA~~l~~~Rt~~qCr 70 (334)
.|...++++.++...+|+..=-.||+.+| -|+.+++-
T Consensus 7 ls~~~ee~I~~fL~~~Gp~~AL~IAK~LG-lktAK~VN 43 (72)
T 3eyi_A 7 FSQQREEDIYRFLKDNGPQRALVIAQALG-MRTAKDVN 43 (72)
T ss_dssp CSSHHHHHHHHHHHHHCSEEHHHHHHHTT-CCSGGGTH
T ss_pred hhhhhHHHHHHHHHHcCCchHHHHHHHhC-cchhhhcC
Confidence 44555777888888999888899999999 78888774
No 157
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=21.85 E-value=69 Score=25.82 Aligned_cols=41 Identities=20% Similarity=0.261 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHhCCCChHHHHhhhCCccChhhhhhhhhcccC
Q 019911 36 EEDFKLINYISNHGEGRWNCLARCAGLKRTGKSCRLRWLNYLR 78 (334)
Q Consensus 36 EEDe~L~~lV~~~g~~~W~~IA~~l~~~Rt~~qCr~Rw~~~L~ 78 (334)
+-|.+|+.++.+.+.-.+.+||+.+| -+...|+.|......
T Consensus 7 ~~~~~il~~L~~~~~~s~~ela~~lg--~s~~tv~~~l~~L~~ 47 (151)
T 2cyy_A 7 EIDKKIIKILQNDGKAPLREISKITG--LAESTIHERIRKLRE 47 (151)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHHC--SCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHC--cCHHHHHHHHHHHHH
Confidence 34667778888888779999999997 677778777665543
No 158
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=21.26 E-value=1.2e+02 Score=24.21 Aligned_cols=43 Identities=16% Similarity=0.179 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHhC-CChhHHhhhCCCCCHHHHHHHHHHhhhHHh
Q 019911 89 EEQLMILELHSRWG-NRWSKIAQHLPGRTDNEIKNYWRTRVQKHA 132 (334)
Q Consensus 89 EED~~Ll~lv~~~G-~~W~~IAk~lpgRT~~qcrnRW~~~lr~~~ 132 (334)
+-|.+|+.+..+.| -.+..||+.+ |-+...|+.|.+.+.+..+
T Consensus 7 ~~~~~il~~L~~~~~~s~~ela~~l-g~s~~tv~~~l~~L~~~G~ 50 (151)
T 2cyy_A 7 EIDKKIIKILQNDGKAPLREISKIT-GLAESTIHERIRKLRESGV 50 (151)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHH-CSCHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCC
Confidence 34667778877777 5799999998 7899999999888776654
No 159
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=20.74 E-value=1.7e+02 Score=22.70 Aligned_cols=42 Identities=19% Similarity=0.090 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHhCCChhHHhhhCCCCCHHHHHHHHHHhhhHH
Q 019911 89 EEQLMILELHSRWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKH 131 (334)
Q Consensus 89 EED~~Ll~lv~~~G~~W~~IAk~lpgRT~~qcrnRW~~~lr~~ 131 (334)
+.+..++.++...|-....||..+ |-+...|+.+....+++.
T Consensus 28 ~~~r~vl~l~~~~g~s~~EIA~~l-giS~~tV~~~l~ra~~kL 69 (113)
T 1xsv_A 28 NKQRNYLELFYLEDYSLSEIADTF-NVSRQAVYDNIRRTGDLV 69 (113)
T ss_dssp HHHHHHHHHHHTSCCCHHHHHHHT-TCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 344556667677788999999998 889999988776655443
No 160
>3cz6_A DNA-binding protein RAP1; helical bundle, activator, chromosomal protein, nucleus, phosphoprotein, repressor, telomere; HET: MES; 1.85A {Saccharomyces cerevisiae} PDB: 3owt_A
Probab=20.23 E-value=72 Score=27.50 Aligned_cols=28 Identities=11% Similarity=0.026 Sum_probs=18.8
Q ss_pred hhhhhhhcccC-CCCCCCCCCHHHHHHHH
Q 019911 68 SCRLRWLNYLR-PDVRRGNITLEEQLMIL 95 (334)
Q Consensus 68 qCr~Rw~~~L~-p~lkrg~WT~EED~~Ll 95 (334)
.+.+.|..-.. |.-.+|-||.|+|+.|.
T Consensus 98 ~VL~~l~~GkgiP~N~pGIWT~eDDe~L~ 126 (168)
T 3cz6_A 98 YFLNMFKDNVNPPPNVPGIWTHDDDESLK 126 (168)
T ss_dssp HHHHHHHHTCSSCTTCTTCCCHHHHHHHH
T ss_pred HHHHHHHhCCCCCCCCCCCCChhhHHHHH
Confidence 33444444333 45678999999999865
No 161
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=20.08 E-value=1.5e+02 Score=24.78 Aligned_cols=40 Identities=8% Similarity=0.062 Sum_probs=28.0
Q ss_pred HHHHHHHHHHhCCChhHHhhhCCCCCHHHHHHHHHHhhhHH
Q 019911 91 QLMILELHSRWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKH 131 (334)
Q Consensus 91 D~~Ll~lv~~~G~~W~~IAk~lpgRT~~qcrnRW~~~lr~~ 131 (334)
+..++.+....|-....||+.+ |-+...|+.+....+++.
T Consensus 192 ~r~vl~l~~~~g~s~~EIA~~l-gis~~~V~~~~~ra~~~L 231 (239)
T 1rp3_A 192 EKLVIQLIFYEELPAKEVAKIL-ETSVSRVSQLKAKALERL 231 (239)
T ss_dssp HHHHHHHHHTSCCCHHHHHHHT-TSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHh-CCCHHHHHHHHHHHHHHH
Confidence 3344444445577899999998 888888988776655543
Done!