RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= 019912
         (334 letters)



>1nuw_A Fructose-1,6-bisphosphatase; allosteric enzymes, gluconeogenesis,
           hydrola; HET: F6P; 1.30A {Sus scrofa} SCOP: e.7.1.1 PDB:
           1eyi_A* 1eyj_A* 1cnq_A* 1eyk_A* 1nux_A* 1nuy_A* 1nuz_A*
           1nv0_A* 1nv1_A* 1nv2_A* 1nv3_A* 1nv4_A* 1nv5_A* 1nv6_A*
           1nv7_A* 1q9d_A* 2qvu_A* 2qvv_A* 1fj6_A* 1fj9_A* ...
          Length = 337

 Score =  459 bits (1183), Expect = e-164
 Identities = 159/277 (57%), Positives = 204/277 (73%), Gaps = 1/277 (0%)

Query: 6   DAHRTDLMTITRFVLNEQSKHPESRGDFSILLSHIVLGCKFVCSAVNKAGLAKLIGLAGE 65
            A  T+++T+TRFV+ E+ +     G+ + LL+ +    K + +AV KAG+A L G+AG 
Sbjct: 4   AAFDTNIVTLTRFVM-EEGRKARGTGEMTQLLNSLCTAVKAISTAVRKAGIAHLYGIAGS 62

Query: 66  TNVQGEEQKKLDVLSNDVFVKALISSGRTCILVSEEDEEAIFVEPSKRGRYCVVFDPLDG 125
           TNV G++ KKLDVLSND+ +  L SS  TC+LVSEED+ AI VEP KRG+Y V FDPLDG
Sbjct: 63  TNVTGDQVKKLDVLSNDLVINVLKSSFATCVLVSEEDKNAIIVEPEKRGKYVVCFDPLDG 122

Query: 126 SSNIDCGVSIGTIFGIYMMKDSHEPTLDDVLQPGNNMLAAGYCMYGSSCTLVLSTGSGVN 185
           SSNIDC VSIGTIFGIY    + EP+  D LQPG N++AAGY +YGS+  LVL+  +GVN
Sbjct: 123 SSNIDCLVSIGTIFGIYRKNSTDEPSEKDALQPGRNLVAAGYALYGSATMLVLAMVNGVN 182

Query: 186 GFTLDPSLGEFILTHPDIKIPKKGKIYSVNEGNAKNWDGPTAKYVEKCKFPKDGSSPKSL 245
            F LDP++GEFIL   D+KI KKG IYS+NEG AK +D    +Y+++ KFP D S+P   
Sbjct: 183 CFMLDPAIGEFILVDRDVKIKKKGSIYSINEGYAKEFDPAITEYIQRKKFPPDNSAPYGA 242

Query: 246 RYIGSMVADVHRTLLYGGIFMYPRDKKSPNGKLRYVF 282
           RY+GSMVADVHRTL+YGGIFMYP +KKSP GKLR ++
Sbjct: 243 RYVGSMVADVHRTLVYGGIFMYPANKKSPKGKLRLLY 279


>2fhy_A Fructose-1,6-bisphosphatase 1; allosteric inhibitors human fbpase,
           benzoxazole, intersubunit allosteric inhibition of human
           fpbase, hydrolase; HET: A37; 2.95A {Homo sapiens}
          Length = 374

 Score =  458 bits (1180), Expect = e-163
 Identities = 161/273 (58%), Positives = 205/273 (75%), Gaps = 1/273 (0%)

Query: 10  TDLMTITRFVLNEQSKHPESRGDFSILLSHIVLGCKFVCSAVNKAGLAKLIGLAGETNVQ 69
           TD+ T+TRFV+ E+ +     G+ + LL+ +    K + SAV KAG+A L G+AG TNV 
Sbjct: 45  TDVNTLTRFVM-EEGRKARGTGELTQLLNSLCTAVKAISSAVRKAGIAHLYGIAGSTNVT 103

Query: 70  GEEQKKLDVLSNDVFVKALISSGRTCILVSEEDEEAIFVEPSKRGRYCVVFDPLDGSSNI 129
           G++ KKLDVLSND+ +  L SS  TC+LVSEED+ AI VEP KRG+Y V FDPLDGSSNI
Sbjct: 104 GDQVKKLDVLSNDLVMNMLKSSFATCVLVSEEDKHAIIVEPEKRGKYVVCFDPLDGSSNI 163

Query: 130 DCGVSIGTIFGIYMMKDSHEPTLDDVLQPGNNMLAAGYCMYGSSCTLVLSTGSGVNGFTL 189
           DC VS+GTIFGIY  K + EP+  D LQPG N++AAGY +YGS+  LVL+   GVN F L
Sbjct: 164 DCLVSVGTIFGIYRKKSTDEPSEKDALQPGRNLVAAGYALYGSATMLVLAMDCGVNCFML 223

Query: 190 DPSLGEFILTHPDIKIPKKGKIYSVNEGNAKNWDGPTAKYVEKCKFPKDGSSPKSLRYIG 249
           DP++GEFIL   D+KI KKGKIYS+NEG AK++D    +Y+++ KFP D S+P   RY+G
Sbjct: 224 DPAIGEFILVDKDVKIKKKGKIYSLNEGYAKDFDPAVTEYIQRKKFPPDNSAPYGARYVG 283

Query: 250 SMVADVHRTLLYGGIFMYPRDKKSPNGKLRYVF 282
           SMVADVHRTL+YGGIF+YP +KKSPNGKLR ++
Sbjct: 284 SMVADVHRTLVYGGIFLYPANKKSPNGKLRLLY 316


>2gq1_A Fructose-1,6-bisphosphatase; allosteric activator site, quaternary
           conformation, hydrolas; 1.45A {Escherichia coli} PDB:
           2owz_A* 2ox3_A* 2q8m_A* 2qvr_A*
          Length = 332

 Score =  447 bits (1152), Expect = e-159
 Identities = 121/274 (44%), Positives = 170/274 (62%), Gaps = 3/274 (1%)

Query: 12  LMTITRFVLNEQSKHPESRGDFSILLSHIVLGCKFVCSAVNKAGLAKLIGLAGETNVQGE 71
           + T+  F++ +Q +   + G+ + LLS I LG K +   +NKAGL  ++G +G  NVQGE
Sbjct: 1   MKTLGEFIVEKQHEFSHATGELTALLSAIKLGAKIIHRDINKAGLVDILGASGAENVQGE 60

Query: 72  EQKKLDVLSNDVFVKALISSGRTCILVSEEDEEAIFVEPSKRGRYCVVFDPLDGSSNIDC 131
            Q+KLD+ +N+    AL +      + SEE++E +  E  +  +Y V+ DPLDGSSNID 
Sbjct: 61  VQQKLDLFANEKLKAALKARDIVAGIASEEEDEIVVFEGCEHAKYVVLMDPLDGSSNIDV 120

Query: 132 GVSIGTIFGIYMMKD--SHEPTLDDVLQPGNNMLAAGYCMYGSSCTLVLSTGSGVNGFTL 189
            VS+GTIF IY          T +D LQPGN  +AAGY +YGSS  LV +TG GV+ FT 
Sbjct: 121 NVSVGTIFSIYRRVTPVGTPVTEEDFLQPGNKQVAAGYVVYGSSTMLVYTTGCGVHAFTY 180

Query: 190 DPSLGEFILTHPDIKIPKKGKIYSVNEGNAKNWDGPTAKYVEKCKFPKDGSS-PKSLRYI 248
           DPSLG F L    ++ P+KGK YS+NEGN   +     KY++ C+     ++ P + RYI
Sbjct: 181 DPSLGVFCLCQERMRFPEKGKTYSINEGNYIKFPNGVKKYIKFCQEEDKSTNRPYTSRYI 240

Query: 249 GSMVADVHRTLLYGGIFMYPRDKKSPNGKLRYVF 282
           GS+VAD HR LL GGI++YP     P+GKLR ++
Sbjct: 241 GSLVADFHRNLLKGGIYLYPSTASHPDGKLRLLY 274


>1dcu_A Fructose-1,6-bisphosphatase; chloroplast, photosynthesis, redox
           regulation, thioredoxin, allostery, hydrolase; 2.20A
           {Pisum sativum} SCOP: e.7.1.1 PDB: 1d9q_A 1dbz_A 1spi_A
          Length = 357

 Score =  431 bits (1111), Expect = e-152
 Identities = 145/298 (48%), Positives = 187/298 (62%), Gaps = 18/298 (6%)

Query: 2   DHEADAHRTDLMTITRFVLNEQSKHPESRGDFSILLSHIVLGCKFVCSAVNKAGLAKLIG 61
                    +++T+T ++L +Q +      + +I+LS I + CK + S V +A ++ L G
Sbjct: 8   SETKKRSGYEIITLTSWLL-QQEQKGIIDAELTIVLSSISMACKQIASLVQRANISNLTG 66

Query: 62  LAGETNVQGEEQKKLDVLSNDVFVKALISSGRTCILVSEEDEEAIFVEPSKRGRYCVVFD 121
             G  N+QGE+QKKLDV+SN+VF   L SSGRT I+ SEE++  + VE S  G Y VVFD
Sbjct: 67  TQGAVNIQGEDQKKLDVISNEVFSNCLRSSGRTGIIASEEEDVPVAVEESYSGNYIVVFD 126

Query: 122 PLDGSSNIDCGVSIGTIFGIYMMKD-----------------SHEPTLDDVLQPGNNMLA 164
           PLDGSSN+D  VS G+IFGIY   D                   +  + +V QPG+N+LA
Sbjct: 127 PLDGSSNLDAAVSTGSIFGIYSPNDECLPDFGDDSDDNTLGTEEQRCIVNVCQPGSNLLA 186

Query: 165 AGYCMYGSSCTLVLSTGSGVNGFTLDPSLGEFILTHPDIKIPKKGKIYSVNEGNAKNWDG 224
           AGYCMY SS   VL+ G GV  FTLDP  GEF+LT  +++IPK GKIYS NEGN K WD 
Sbjct: 187 AGYCMYSSSVIFVLTIGKGVFVFTLDPLYGEFVLTQENLQIPKSGKIYSFNEGNYKLWDE 246

Query: 225 PTAKYVEKCKFPKDGSSPKSLRYIGSMVADVHRTLLYGGIFMYPRDKKSPNGKLRYVF 282
              KY++  K P     P S RYIGS+V D HRTLLYGGI+ YPRDKKS NGKLR ++
Sbjct: 247 NLKKYIDDLKEPGPSGKPYSARYIGSLVGDFHRTLLYGGIYGYPRDKKSKNGKLRLLY 304


>3uks_A Sedoheptulose-1,7 bisphosphatase, putative; structural genomics,
           center for structural genomics of infec diseases, csgid;
           1.85A {Toxoplasma gondii}
          Length = 347

 Score =  383 bits (986), Expect = e-134
 Identities = 70/297 (23%), Positives = 118/297 (39%), Gaps = 28/297 (9%)

Query: 3   HEADAHRTDLMTITRFV-----LNEQSKHPESRGDFSILLSHIVLGCKFVCSAVNKAGLA 57
           H    H                L++  K   +    + L+  I+  C  + SA+    + 
Sbjct: 5   HHHHHHENLYFQGMESPSALPSLDQLLKEQGADQTLTDLILAILDRCGKIASALQGTSV- 63

Query: 58  KLIGLAGETNVQGEEQKKLDVLSNDVFVKALISSGRTCILVSEEDEEAIFVEPSKRGRYC 117
                 G  N  G+EQ  +DV++ ++      SS  + +     +E+    E  K G + 
Sbjct: 64  ---DKVGSVNEFGDEQLTVDVIAENLLRSWAQSSEGSAVRAVCSEEDIHLQECHKNGEFI 120

Query: 118 VVFDPLDGSSNIDCGVSIGTIFGIYMMKD---SHEPTLDDVLQPGNNMLAAGYCMYGSSC 174
           + +DPLDGSS IDC  ++G+I  I+ +       +     + + G   +A+   +YG   
Sbjct: 121 LCWDPLDGSSIIDCNWAVGSIVSIWRIGHHGVQWQGADTLIQKTGRQQVASLIVVYGPRT 180

Query: 175 TLVLSTGSGVN-----GFTLDPSL---GEFILTHPDIKIPKKGKIYSVNEGNAKNWDGPT 226
           T V++           G  LD  +   G+FI     I  P + KI+S     A       
Sbjct: 181 TGVVAVNVDAGGIVKEGTALDLEMKDNGKFICRGKPIIKP-QAKIFSPANLRAAQDLPAY 239

Query: 227 AKYVEKCKFPKDGSSPKSLRYIGSMVADVHRTLL-YGGIFMYPRDKKSPNGKLRYVF 282
            + +E            +LRY G +V DV++  +   G+F  P  K +P  KLR  F
Sbjct: 240 KQLIEFWM-----EKRYTLRYTGGLVPDVYQIFVKQQGVFCNPASKAAP-AKLRMCF 290


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 38.7 bits (89), Expect = 0.003
 Identities = 68/401 (16%), Positives = 119/401 (29%), Gaps = 119/401 (29%)

Query: 11  DLMTITRFVLNE-------QSKHPESRGD--FSILLS---HIVLGCKFVCSAVNK--AGL 56
           D+  + + +L++        SK   S     F  LLS    +V   KFV   +      L
Sbjct: 37  DVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQ--KFVEEVLRINYKFL 94

Query: 57  AKLIGLAGETNVQGEEQK----KLDVLSND--VFVKALISSG------RTCILVSEEDEE 104
              I    E        +    + D L ND  VF K  +S        R   L+     +
Sbjct: 95  MSPI--KTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQA-LLELRPAK 151

Query: 105 AIFVEPSK-RGRYCVVFDPLDGSSNIDCGVSIGTIFGIYMMKDSHEPTLDDVLQPGNNML 163
            + ++     G+  V  D    S  + C +     F I+ +   +  + + VL+    +L
Sbjct: 152 NVLIDGVLGSGKTWVALDVCL-SYKVQCKMD----FKIFWLNLKNCNSPETVLEMLQKLL 206

Query: 164 AAGYCMYGSS-----------------------------CTLVL---STGSGVNGF---- 187
                 + S                              C LVL         N F    
Sbjct: 207 YQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSC 266

Query: 188 -----TLDPSLGEFILTHPDIKIPKKGKIYSVNEGNAKNWDGPTAKYVEKCKF---PKD- 238
                T    + +F+       I       ++     K+      KY++ C+    P++ 
Sbjct: 267 KILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSL---LLKYLD-CRPQDLPREV 322

Query: 239 -GSSPKSLRYIGSMVADVHRTLLYGGIFMYPRDKK------------SPNGKLRYVFGSC 285
             ++P+ L  I   + D   T      + +    K             P  + R +F   
Sbjct: 323 LTTNPRRLSIIAESIRDGLATWDN---WKHVNCDKLTTIIESSLNVLEPA-EYRKMFDRL 378

Query: 286 SNF-------------FWFY--FFFPLRSMS-LKNYSVITK 310
           S F              WF       +  ++ L  YS++ K
Sbjct: 379 SVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEK 419


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 32.3 bits (73), Expect = 0.29
 Identities = 46/305 (15%), Positives = 93/305 (30%), Gaps = 112/305 (36%)

Query: 2   DHEADAHRTDLMTITRFVLNEQSKHPESRGDFSILLSHIVLGCKFVC--SAVNKAGLAKL 59
             +A+   T  + I  ++     ++P +  D   LLS I + C  +      +    AKL
Sbjct: 202 TLDAEKVFTQGLNILEWL-----ENPSNTPDKDYLLS-IPISCPLIGVIQLAHYVVTAKL 255

Query: 60  IGLAGETNVQGEEQKKLDVLSNDVFVKALISSGRTCILVSEEDEEAIFVEPSKRGRYCVV 119
           +G        GE +  L   +     + L+++    + ++E D    F    ++    V+
Sbjct: 256 LGFT-----PGELRSYLKGAT--GHSQGLVTA----VAIAETDSWESFFVSVRKA-ITVL 303

Query: 120 FDPLDGSSNIDCGVSIGT----IFGIY-----MMKDSHE-----PTLDDVLQPGNNMLAA 165
           F              IG      +        +++DS E     P+      P   ML+ 
Sbjct: 304 F-------------FIGVRCYEAYPNTSLPPSILEDSLENNEGVPS------P---MLS- 340

Query: 166 GYCMYGSSCTLVLSTGSGVNGFTLDPSLGEFILTHPDIKIPKKGKIY-S-VNEGNAKNWD 223
                             ++  T +  + +++    +  +P   ++  S VN        
Sbjct: 341 ------------------ISNLTQE-QVQDYV-NKTNSHLPAGKQVEISLVN-------- 372

Query: 224 GPTAKYVEKCKFPKDGSSPKSLRYIGSMV--------ADVHRTLLYGGIFMYPRDKKSPN 275
           G     V           P+SL  +   +         D  R          P  ++   
Sbjct: 373 GAKNLVV--------SGPPQSLYGLNLTLRKAKAPSGLDQSRI---------PFSERKLK 415

Query: 276 GKLRY 280
              R+
Sbjct: 416 FSNRF 420



 Score = 29.6 bits (66), Expect = 2.1
 Identities = 13/90 (14%), Positives = 31/90 (34%), Gaps = 39/90 (43%)

Query: 184 VNGFTLDPSLGEFILTHPDIKIPKKGKIYSVNEGNAKNWDGPTAKYVE----KCKF---- 235
           ++ ++  P      L+H  ++       +            PTA +      + +F    
Sbjct: 1   MDAYSTRP----LTLSHGSLE-------HV--------LLVPTASFFIASQLQEQFNKIL 41

Query: 236 --PKDG-------SSPKSL--RYIGSMVAD 254
             P +G       ++P  L  +++G  V+ 
Sbjct: 42  PEPTEGFAADDEPTTPAELVGKFLG-YVSS 70


>3b8b_A CYSQ, sulfite synthesis pathway protein;
           3'-phosphoadenosine-5'-phosphosulfate (PAPS)
           3'-phosphatase, structural genomics; HET: MSE; 1.70A
           {Bacteroides thetaiotaomicron vpi-5482}
          Length = 292

 Score = 31.5 bits (72), Expect = 0.32
 Identities = 12/50 (24%), Positives = 21/50 (42%), Gaps = 5/50 (10%)

Query: 77  DVLSNDVFVKALISSGRTCI-LVSEEDEEAIFVEPSKRGRYCVVFDPLDG 125
           D  +++  V  L  +      ++SEE +   +          +V DPLDG
Sbjct: 64  DRKAHEAIVAILNETP---FPVLSEEGKHMDYAVRRGWDTLWIV-DPLDG 109


>2hfv_A Hypothetical protein RPA1041; NESG, GFT-alpha+beta, structural
           genomics, PSI-2, protein structure initiative; NMR
           {Pseudomonas aeruginosa} SCOP: d.58.5.5
          Length = 97

 Score = 29.2 bits (65), Expect = 0.62
 Identities = 8/22 (36%), Positives = 14/22 (63%)

Query: 248 IGSMVADVHRTLLYGGIFMYPR 269
           IG +V D + ++L G + + PR
Sbjct: 47  IGHLVLDQNMSILEGSLGVIPR 68


>2aj6_A Hypothetical protein MW0638; structural genomics, joint center for
           structural genomics, J protein structure initiative,
           PSI-2; HET: MSE UNL; 1.63A {Staphylococcus aureus subsp}
           SCOP: d.108.1.1
          Length = 159

 Score = 29.4 bits (66), Expect = 0.94
 Identities = 6/56 (10%), Positives = 16/56 (28%), Gaps = 3/56 (5%)

Query: 69  QGEEQKKLDVLSNDVFVKALISSGRTCILVSEEDEEAI---FVEPSKRGRYCVVFD 121
              +  KL +      + + +      I + E + + I   +   S       +  
Sbjct: 40  SNYKCTKLSIALRYEMICSRLEHTNDKIYIYENEGQLIAFIWGHFSNEKSMVNIEL 95


>2vzs_A CSXA, EXO-beta-D-glucosaminidase; hydrolase, GH2, glucosamine,
           glycoside hydrolase; HET: GCS; 1.85A {Amycolatopsis
           orientalis} SCOP: b.1.4.1 b.1.4.1 b.1.4.1 b.18.1.5
           c.1.8.3 PDB: 2x05_A* 2x09_A* 2vzo_A 2vzt_A* 2vzv_A*
           2vzu_A*
          Length = 1032

 Score = 28.9 bits (64), Expect = 3.1
 Identities = 8/59 (13%), Positives = 19/59 (32%), Gaps = 1/59 (1%)

Query: 107 FVEPSKRGRYCVVFDPLDGSSNIDC-GVSIGTIFGIYMMKDSHEPTLDDVLQPGNNMLA 164
                   R  + F  +   +++   G  + T   +      H+  +   +  G N +A
Sbjct: 127 LNVDDTSSRTYLDFSGVLSKADVWVNGTKVATKDQVNGAYTRHDLDITAQVHTGVNSVA 185


>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus
           sphaericus} SCOP: c.2.1.7 c.58.1.1
          Length = 364

 Score = 28.3 bits (64), Expect = 3.9
 Identities = 11/43 (25%), Positives = 17/43 (39%), Gaps = 3/43 (6%)

Query: 43  GCKFVCSAVNKAGLAKLIGLAGETNVQGEEQKKLDVLSNDVFV 85
           G K V + VNKA ++  +   G   V       +     D+F 
Sbjct: 196 GAKLVVTDVNKAAVSAAVAEEGADAVAPNAIYGVTC---DIFA 235


>1jp4_A 3'(2'),5'-bisphosphate nucleotidase; protein-product complex, sugar
           nucleotidase fold, hydrolase; HET: AMP; 1.69A {Rattus
           norvegicus} SCOP: e.7.1.1 PDB: 2wef_A*
          Length = 308

 Score = 27.4 bits (61), Expect = 7.1
 Identities = 28/162 (17%), Positives = 46/162 (28%), Gaps = 23/162 (14%)

Query: 50  AVNKAGLAKLIGLAGETNVQGEEQKKLDVLSNDVFVKALISSGRTCILVSEEDEEAIFVE 109
            V  +  + L     +  + GEE      +  ++               S+         
Sbjct: 53  MVQMSICSSLSRKFPKLTIIGEEDLPPGEVDQELIEDGQSEEILKQPCPSQYSAI----- 107

Query: 110 PSKRGRYCVVFDPLDGSSNIDCG------VSIGTIFGIYMMKDSHEPTLDDVLQPGNNML 163
             K     V  DP+DG+     G      V IG  +         +     + QP  N  
Sbjct: 108 --KEEDLVVWVDPVDGTKEYTEGLLDNVTVLIGIAYE-------GKAIAGIINQPYYNYQ 158

Query: 164 AAGYCMYGSSCTLVLSTGSGVNGFTLDPSLGEFILT---HPD 202
           A    + G +   VL  G+        P+    I T   H +
Sbjct: 159 AGPDAVLGRTIWGVLGLGAFGFQLKEAPAGKHIITTTRSHSN 200


>3n9r_A Fructose-bisphosphate aldolase; FBP aldolase, class II, inhibitor,
           lyase; HET: TD3; 1.80A {Helicobacter pylori} PDB:
           3c52_A* 3c56_A* 3c4u_A* 3n9s_A*
          Length = 307

 Score = 27.2 bits (61), Expect = 7.4
 Identities = 12/32 (37%), Positives = 16/32 (50%), Gaps = 4/32 (12%)

Query: 128 NIDC-GVSIGTIFGIYMMKDSHEPTLD-DVLQ 157
            +D    +IGT  G +  K   EP LD + LQ
Sbjct: 168 QVDYLAPAIGTSHGAF--KFKGEPKLDFERLQ 197


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.320    0.137    0.419 

Gapped
Lambda     K      H
   0.267   0.0754    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,054,265
Number of extensions: 298839
Number of successful extensions: 590
Number of sequences better than 10.0: 1
Number of HSP's gapped: 574
Number of HSP's successfully gapped: 19
Length of query: 334
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 240
Effective length of database: 4,077,219
Effective search space: 978532560
Effective search space used: 978532560
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (25.7 bits)