Query 019915
Match_columns 334
No_of_seqs 241 out of 1276
Neff 5.5
Searched_HMMs 46136
Date Fri Mar 29 05:33:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019915.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019915hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03014 carbonic anhydrase 100.0 2E-104 5E-109 765.1 28.9 332 1-333 1-347 (347)
2 PLN03019 carbonic anhydrase 100.0 5E-71 1.1E-75 531.2 25.2 258 64-322 71-330 (330)
3 PLN00416 carbonate dehydratase 100.0 3.3E-65 7.1E-70 480.7 24.3 255 66-321 1-256 (258)
4 PLN03006 carbonate dehydratase 100.0 2.1E-61 4.5E-66 461.0 21.3 232 84-317 49-282 (301)
5 PLN02154 carbonic anhydrase 100.0 3.4E-52 7.4E-57 395.6 22.1 214 110-324 71-285 (290)
6 cd00884 beta_CA_cladeB Carboni 100.0 1.8E-52 3.9E-57 378.9 17.4 189 121-310 1-190 (190)
7 PRK10437 carbonic anhydrase; P 100.0 4.9E-52 1.1E-56 383.3 19.9 196 114-318 3-199 (220)
8 KOG1578 Predicted carbonic anh 100.0 1.5E-52 3.2E-57 391.5 13.5 270 43-324 2-271 (276)
9 cd00883 beta_CA_cladeA Carboni 100.0 2E-51 4.3E-56 369.5 17.3 179 122-309 1-181 (182)
10 PRK15219 carbonic anhydrase; P 100.0 6.9E-51 1.5E-55 381.1 19.9 190 108-310 50-244 (245)
11 COG0288 CynT Carbonic anhydras 100.0 1.3E-50 2.7E-55 371.2 18.7 199 113-318 2-203 (207)
12 cd03378 beta_CA_cladeC Carboni 100.0 3.6E-46 7.8E-51 327.6 16.7 150 111-310 1-154 (154)
13 PF00484 Pro_CA: Carbonic anhy 100.0 1.3E-42 2.8E-47 301.6 13.6 152 148-307 1-153 (153)
14 cd00382 beta_CA Carbonic anhyd 100.0 6.9E-41 1.5E-45 282.3 14.4 119 144-310 1-119 (119)
15 cd03379 beta_CA_cladeD Carboni 100.0 5.4E-38 1.2E-42 271.9 13.5 141 144-309 1-141 (142)
16 KOG1578 Predicted carbonic anh 98.2 3.6E-08 7.7E-13 93.6 -5.4 191 118-311 3-250 (276)
17 COG1254 AcyP Acylphosphatases 66.8 4.7 0.0001 32.9 2.3 21 292-312 29-49 (92)
18 PF12778 PXPV: PXPV repeat (3 61.0 4.4 9.5E-05 24.7 0.9 18 41-58 4-21 (22)
19 PF10070 DUF2309: Uncharacteri 49.6 42 0.0009 37.3 6.7 37 278-314 541-583 (788)
20 COG0279 GmhA Phosphoheptose is 39.8 1.4E+02 0.003 27.3 7.3 65 147-222 82-153 (176)
21 TIGR02742 TrbC_Ftype type-F co 36.8 63 0.0014 28.0 4.5 55 131-204 58-112 (130)
22 KOG0025 Zn2+-binding dehydroge 31.6 68 0.0015 32.0 4.3 41 161-212 153-193 (354)
23 PF00009 GTP_EFTU: Elongation 31.3 29 0.00063 30.4 1.7 14 205-218 3-16 (188)
24 PF00355 Rieske: Rieske [2Fe-2 30.8 18 0.00038 28.4 0.2 14 295-308 66-79 (97)
25 PF04019 DUF359: Protein of un 30.4 1.7E+02 0.0036 25.0 6.1 77 140-224 6-82 (121)
26 PRK11440 putative hydrolase; P 29.1 1.1E+02 0.0023 27.2 4.9 48 164-221 90-137 (188)
27 cd01891 TypA_BipA TypA (tyrosi 27.4 39 0.00085 29.6 1.8 14 205-218 2-15 (194)
28 PRK11181 23S rRNA (guanosine-2 27.1 2.7E+02 0.0059 26.2 7.5 75 133-217 54-133 (244)
29 cd03531 Rieske_RO_Alpha_KSH Th 27.1 27 0.00058 28.9 0.7 17 295-312 64-80 (115)
30 PRK14430 acylphosphatase; Prov 25.7 48 0.001 26.7 1.9 20 292-311 29-48 (92)
31 cd03528 Rieske_RO_ferredoxin R 25.0 28 0.0006 27.3 0.4 14 295-308 62-75 (98)
32 PRK09778 putative antitoxin of 25.0 93 0.002 25.8 3.4 74 12-104 6-81 (97)
33 PRK14432 acylphosphatase; Prov 24.9 52 0.0011 26.6 1.9 21 292-312 27-47 (93)
34 PF00561 Abhydrolase_1: alpha/ 24.5 68 0.0015 27.5 2.8 30 190-220 28-57 (230)
35 PF08822 DUF1804: Protein of u 24.4 1.7E+02 0.0038 26.4 5.3 56 68-125 105-160 (165)
36 cd04321 ScAspRS_mt_like_N ScAs 24.3 97 0.0021 24.1 3.4 26 292-317 1-28 (86)
37 PF14618 DUF4452: Domain of un 24.2 57 0.0012 29.5 2.2 62 6-67 77-148 (165)
38 cd03548 Rieske_RO_Alpha_OMO_CA 23.7 50 0.0011 28.1 1.7 16 295-310 78-93 (136)
39 cd03478 Rieske_AIFL_N AIFL (ap 23.6 27 0.00058 27.5 0.0 14 295-308 61-74 (95)
40 PRK14440 acylphosphatase; Prov 23.2 62 0.0013 26.0 2.1 20 292-311 28-47 (90)
41 cd01890 LepA LepA subfamily. 23.1 47 0.001 28.2 1.4 13 206-218 1-13 (179)
42 PRK14423 acylphosphatase; Prov 22.9 72 0.0016 25.6 2.4 20 292-311 30-49 (92)
43 PF13580 SIS_2: SIS domain; PD 22.8 1.1E+02 0.0025 25.8 3.8 39 164-212 99-138 (138)
44 PF05952 ComX: Bacillus compet 22.6 82 0.0018 23.7 2.4 25 274-298 5-29 (57)
45 PRK14445 acylphosphatase; Prov 22.1 70 0.0015 25.6 2.2 21 291-311 28-48 (91)
46 COG1116 TauB ABC-type nitrate/ 20.8 59 0.0013 31.2 1.7 15 205-219 29-43 (248)
47 PRK14429 acylphosphatase; Prov 20.4 81 0.0018 25.2 2.2 19 292-310 27-45 (90)
48 TIGR02377 MocE_fam_FeS Rieske 20.2 42 0.00091 27.0 0.5 13 295-307 64-76 (101)
49 cd04160 Arfrp1 Arfrp1 subfamil 20.1 57 0.0012 27.2 1.3 13 207-219 1-13 (167)
No 1
>PLN03014 carbonic anhydrase
Probab=100.00 E-value=2.5e-104 Score=765.05 Aligned_cols=332 Identities=77% Similarity=1.204 Sum_probs=308.4
Q ss_pred CCcccccceeecccccccccccccCCCCc-eEEEeec------------CCCCCCCcccCCccccCCCcccCcchhhHhh
Q 019915 1 MSTASINNWCLTSVSQAQSSLIKSSTLRP-SIVARLN------------SPASPPSLIRNEPVFAAPAPIINPNWREDMA 67 (334)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 67 (334)
|||++|||||+||++|+++++++ .++|| ++||+|+ |+++||+||||+||||||+|||||+|+|||+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~ 79 (347)
T PLN03014 1 MSTAPLSGFFLTSLSPSQSSLQK-LSLRTSSTVACLPPASSSSSSSSSSSSRSVPTLIRNEPVFAAPAPIIAPYWSEEMG 79 (347)
T ss_pred CccccccceeccccCcccccccc-cccCCcceEEEeccccccccccCCCCCCCCchhhcCCccccCCCcccCchhHhhhc
Confidence 99999999999999999999977 78899 8999996 1133899999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHhhhhcCcchhHhhhhHHHHHhhcCCC--CCChHHHHHHHHHHHHHHHhhhccCChhhHHhhhcCCC
Q 019915 68 NQSYEEAIEALKKLLKEKEDLKPVAAAKVEQITAQLQTPS--DTKAFDSVERIKEGFIHFKREKYEKNPALYSELAKGQS 145 (334)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~l~~~a~~~i~~~t~~l~~~~--~~~p~~~l~~Ll~GN~rF~~~~~~~~p~~~~~La~gQ~ 145 (334)
++|||+||++|+|||+||++|+++|++||+++|++|++.. ...+++++++|++||++|+.+.+.+++++|+++++||+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lerL~~GN~rF~~~~~~~~~~~~~~La~GQ~ 159 (347)
T PLN03014 80 TEAYDEAIEALKKLLIEKEELKTVAAAKVEQITAALQTGTSSDKKAFDPVETIKQGFIKFKKEKYETNPALYGELAKGQS 159 (347)
T ss_pred hhhHHHHHHHHHhhcccccccchHHHHhHHHHHHHHhcccCCCCCCcCHHHHHHHHHHHHHhhccccCHHHHHhhccCCC
Confidence 9999999999999999999999999999999999998632 35689999999999999999999999999999999999
Q ss_pred CcEEEEeecCCCCChhhhcCCCCCcEEEEeccCCcCCCCCCcccchhHHHHHHHHHhcCcceEEEeccCCCCcccccccc
Q 019915 146 PKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQTKYAGVGAAVEYAVLHLKVSNIVVIGHSACGGIKGLMSF 225 (334)
Q Consensus 146 Pk~lVItCsDSRV~Pe~ifg~~pGD~FVvRNaGN~V~~~d~~~~~~v~ASLEyAV~~L~Vk~IVV~GHS~CGav~Aal~~ 225 (334)
|+++||+||||||+|+.+||++|||+||+||+||+|+++|...+++++++|||||.+|+|++|||||||+||||+|+++.
T Consensus 160 P~alvI~CsDSRV~Pe~Ifd~~pGDlFVvRNaGNiV~~~d~~~~~~v~asLEYAV~~L~V~~IVV~GHs~CGaV~Aa~~~ 239 (347)
T PLN03014 160 PKYMVFACSDSRVCPSHVLDFQPGDAFVVRNIANMVPPFDKVKYGGVGAAIEYAVLHLKVENIVVIGHSACGGIKGLMSF 239 (347)
T ss_pred CCEEEEEeccCCCCHHHHhCCCCCcEEEEeccccccCcccccccccchhHHHHHHHHhCCCEEEEeCCCCchHHHHHHhc
Confidence 99999999999999999999999999999999999999876556678999999999999999999999999999999876
Q ss_pred cCCCCCCchhHHHHHHcccchhhhhhhhcCCCCchhhhhHHHHHHHHHHHHHhhhchHHHhhhhCCceEEEEEEEEccCC
Q 019915 226 TFDGNNSTDFIEDWVKIGIPAKSKVLTEHGDKPFGDQCTYCEKEAVNVSLSNLLTYPFVREGLVNKTLALKGGYYDFVNG 305 (334)
Q Consensus 226 ~~~g~~~~~~I~~wl~~~~pa~~~~~~~~~~~~~~e~~~~~~~enV~~qv~~L~s~P~I~~~v~~g~L~V~G~vYDi~TG 305 (334)
.+++....++|++|+..+.|++.++..+++..++.+++..|+++||++||++|++||+|++++++|+|.||||+||++||
T Consensus 240 ~~~g~~~~~~I~~wl~~i~pA~~~v~~~~~~~~~~d~~~~~ekeNV~~qV~nL~t~P~V~eav~~G~L~I~G~~YDi~TG 319 (347)
T PLN03014 240 PLDGNNSTDFIEDWVKICLPAKSKVISELGDSAFEDQCGRCEREAVNVSLANLLTYPFVREGLVKGTLALKGGYYDFVKG 319 (347)
T ss_pred cccccccchhHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHcCCcEEEEEEEECCCc
Confidence 55555556899999999999988776666666777888888899999999999999999999999999999999999999
Q ss_pred eEEEEeccCCCCCCCCccchhhhhhccc
Q 019915 306 SFELWGLDFSLSPPLSVKDVATILHWKL 333 (334)
Q Consensus 306 ~ve~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (334)
+|++|+.+++.+|+.+++|+||||||||
T Consensus 320 ~V~~l~~~~~~~~~~~~~~~~~~~~~~~ 347 (347)
T PLN03014 320 AFELWGLEFGLSETSSVKDVATILHWKL 347 (347)
T ss_pred eEEEeccccccCCccccchhHhhhcccC
Confidence 9999999999999999999999999997
No 2
>PLN03019 carbonic anhydrase
Probab=100.00 E-value=5e-71 Score=531.23 Aligned_cols=258 Identities=79% Similarity=1.259 Sum_probs=234.7
Q ss_pred hHhhhhhHHHHHHHHHHHhhhhcCcchhHhhhhHHHHHhhcCC--CCCChHHHHHHHHHHHHHHHhhhccCChhhHHhhh
Q 019915 64 EDMANQSYEEAIEALKKLLKEKEDLKPVAAAKVEQITAQLQTP--SDTKAFDSVERIKEGFIHFKREKYEKNPALYSELA 141 (334)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~i~~~t~~l~~~--~~~~p~~~l~~Ll~GN~rF~~~~~~~~p~~~~~La 141 (334)
++|+++|||+||++|+|||+||++|+++|++||+++|++|++. ..+++++++++|++||++|+.+.+.++|++|.+|+
T Consensus 71 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ale~Ll~GN~rF~~~~~~~~p~~~~~La 150 (330)
T PLN03019 71 RRMGNESYEDAIEALKKLLIEKDDLKDVAAAKVKKITAELQAASSSDSKSFDPVERIKEGFVTFKKEKYETNPALYGELA 150 (330)
T ss_pred HHHhhhhHHHHHHHHHhhcccccccchHHHHHHHHhhHHhhhccCCCCchhHHHHHHHHHHHHHHhccccccHHHHHhhc
Confidence 4588999999999999999999999999999999999999863 23568999999999999999999989999999999
Q ss_pred cCCCCcEEEEeecCCCCChhhhcCCCCCcEEEEeccCCcCCCCCCcccchhHHHHHHHHHhcCcceEEEeccCCCCcccc
Q 019915 142 KGQSPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQTKYAGVGAAVEYAVLHLKVSNIVVIGHSACGGIKG 221 (334)
Q Consensus 142 ~gQ~Pk~lVItCsDSRV~Pe~ifg~~pGD~FVvRNaGN~V~~~d~~~~~~v~ASLEyAV~~L~Vk~IVV~GHS~CGav~A 221 (334)
+||+|+++||+||||||+|+.|||++|||+||+||+||+|+++|...+++++++|||||.+|||++|||||||+||||+|
T Consensus 151 ~gQ~P~alvI~CsDSRV~Pe~Ifd~~pGDlFVvRNaGNiV~p~d~~~~~~v~aSIEYAV~~L~V~~IVV~GHs~CGaVkA 230 (330)
T PLN03019 151 KGQSPKYMVFACSDSRVCPSHVLDFHPGDAFVVRNIANMVPPFDKVKYAGVGAAIEYAVLHLKVENIVVIGHSACGGIKG 230 (330)
T ss_pred cCCCCCEEEEEecccCCCHHHHhCCCCCceEEEeccccccCCcccccccccchhHHHHHHHhCCCEEEEecCCCchHHHH
Confidence 99999999999999999999999999999999999999999988766678999999999999999999999999999999
Q ss_pred cccccCCCCCCchhHHHHHHcccchhhhhhhhcCCCCchhhhhHHHHHHHHHHHHHhhhchHHHhhhhCCceEEEEEEEE
Q 019915 222 LMSFTFDGNNSTDFIEDWVKIGIPAKSKVLTEHGDKPFGDQCTYCEKEAVNVSLSNLLTYPFVREGLVNKTLALKGGYYD 301 (334)
Q Consensus 222 al~~~~~g~~~~~~I~~wl~~~~pa~~~~~~~~~~~~~~e~~~~~~~enV~~qv~~L~s~P~I~~~v~~g~L~V~G~vYD 301 (334)
+++...++....++|++|++.+.|++.++....+...+.+++..+++ ||++||++|+++|+|++++++|+|.||||+||
T Consensus 231 al~~~~~g~~~~~~I~~wL~~i~pA~~~v~~~~~~~~~~d~~~~~E~-NV~~qv~nL~t~P~V~e~v~~G~L~I~G~~YD 309 (330)
T PLN03019 231 LMSFPLDGNNSTDFIEDWVKICLPAKSKVLAESESSAFEDQCGRCER-AVNVSLANLLTYPFVREGVVKGTLALKGGYYD 309 (330)
T ss_pred HHhccccCCccchHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHH-HHHHHHHHHHhCHHHHHHHHcCCcEEEEEEEE
Confidence 98765555555689999999999998776554444456666666665 99999999999999999999999999999999
Q ss_pred ccCCeEEEEeccCCCCCCCCc
Q 019915 302 FVNGSFELWGLDFSLSPPLSV 322 (334)
Q Consensus 302 i~TG~ve~~~~~~~~~~~~~~ 322 (334)
++||+|++|+.+++++|+.++
T Consensus 310 l~TG~V~~~~~~~~~~~~~~~ 330 (330)
T PLN03019 310 FVNGSFELWELQFGISPVHSI 330 (330)
T ss_pred CCCceEEEEccccCcCCCCcC
Confidence 999999999999999999864
No 3
>PLN00416 carbonate dehydratase
Probab=100.00 E-value=3.3e-65 Score=480.69 Aligned_cols=255 Identities=62% Similarity=1.057 Sum_probs=229.4
Q ss_pred hhhhhHHHHHHHHHHHhhhhcCcchhHhhhhHHHHHhhcCCCCCChHHHHHHHHHHHHHHHhhhccCChhhHHhhhcCCC
Q 019915 66 MANQSYEEAIEALKKLLKEKEDLKPVAAAKVEQITAQLQTPSDTKAFDSVERIKEGFIHFKREKYEKNPALYSELAKGQS 145 (334)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~i~~~t~~l~~~~~~~p~~~l~~Ll~GN~rF~~~~~~~~p~~~~~La~gQ~ 145 (334)
|+.+||+++|.+|.+||+.|++++++++++++.+++.|+... .+|.+++++|++||+||+.+++.+++++|++++.||+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~al~~Ll~Gn~rF~~~~~~~~~~~~~~la~gQ~ 79 (258)
T PLN00416 1 MATESYEAAIKGLNDLLSTKADLGNVAAAKIKALTAELKELD-SSNSDAIERIKTGFTQFKTEKYLKNSTLFNHLAKTQT 79 (258)
T ss_pred CCcccHHHHHHHHHhhcccccccchHHHHhHHHHHHHHHHhh-cCHHHHHHHHHHHHHHHHhcccccCHHHHHhhccCCC
Confidence 789999999999999999999999999999999999999875 6799999999999999999998888999999999999
Q ss_pred CcEEEEeecCCCCChhhhcCCCCCcEEEEeccCCcCCCCCCcccchhHHHHHHHHHhcCcceEEEeccCCCCcccccccc
Q 019915 146 PKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQTKYAGVGAAVEYAVLHLKVSNIVVIGHSACGGIKGLMSF 225 (334)
Q Consensus 146 Pk~lVItCsDSRV~Pe~ifg~~pGD~FVvRNaGN~V~~~d~~~~~~v~ASLEyAV~~L~Vk~IVV~GHS~CGav~Aal~~ 225 (334)
|+++|||||||||+|+.|||++|||+||+||+||+|+++|...++++++||||||.+|||++|||||||+||||+|+++.
T Consensus 80 P~alvI~CsDSRV~pe~If~~~pGDlFVvRNaGNiV~~~d~~~~~~~~asLEyAv~~L~V~~IVV~GHs~CGaV~Aa~~~ 159 (258)
T PLN00416 80 PKFLVFACSDSRVCPSHILNFQPGEAFVVRNIANMVPPFDQKRHSGVGAAVEYAVVHLKVENILVIGHSCCGGIKGLMSI 159 (258)
T ss_pred CCEEEEEecCCCCCHHHHcCCCCCCEEEEeccccccCCccccccccchhHHHHHHHHhCCCEEEEecCCCchHHHHHHhc
Confidence 99999999999999999999999999999999999999875445678899999999999999999999999999999864
Q ss_pred cCCC-CCCchhHHHHHHcccchhhhhhhhcCCCCchhhhhHHHHHHHHHHHHHhhhchHHHhhhhCCceEEEEEEEEccC
Q 019915 226 TFDG-NNSTDFIEDWVKIGIPAKSKVLTEHGDKPFGDQCTYCEKEAVNVSLSNLLTYPFVREGLVNKTLALKGGYYDFVN 304 (334)
Q Consensus 226 ~~~g-~~~~~~I~~wl~~~~pa~~~~~~~~~~~~~~e~~~~~~~enV~~qv~~L~s~P~I~~~v~~g~L~V~G~vYDi~T 304 (334)
.+.. ....+++..|+..+.|++..........++.+.+..++++||++|+++|++||+|++++++|+|.||||+||++|
T Consensus 160 ~~~~~~~~~~~l~~wl~~i~pa~~~~~~~~~~~~~~~~~~~~e~~nV~~qv~~L~~~P~V~~~v~~g~l~I~G~~Ydl~T 239 (258)
T PLN00416 160 EDDAAPTQSDFIENWVKIGASARNKIKEEHKDLSYDDQCNKCEKEAVNVSLGNLLSYPFVRAEVVKNTLAIRGGHYNFVK 239 (258)
T ss_pred cccccccccchHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHCCCcEEEEEEEECCC
Confidence 3221 122468999999888888765554444556666667888999999999999999999999999999999999999
Q ss_pred CeEEEEeccCCCCCCCC
Q 019915 305 GSFELWGLDFSLSPPLS 321 (334)
Q Consensus 305 G~ve~~~~~~~~~~~~~ 321 (334)
|+|++++.+++.+|...
T Consensus 240 G~v~~~~~~~~~~p~~~ 256 (258)
T PLN00416 240 GTFDLWELDFKTTPAFA 256 (258)
T ss_pred ceEEEeccCcCCCCCcc
Confidence 99999999998888654
No 4
>PLN03006 carbonate dehydratase
Probab=100.00 E-value=2.1e-61 Score=461.05 Aligned_cols=232 Identities=43% Similarity=0.800 Sum_probs=207.7
Q ss_pred hhcCcchhHhhhhHHHHHhhcCCC--CCChHHHHHHHHHHHHHHHhhhccCChhhHHhhhcCCCCcEEEEeecCCCCChh
Q 019915 84 EKEDLKPVAAAKVEQITAQLQTPS--DTKAFDSVERIKEGFIHFKREKYEKNPALYSELAKGQSPKYMVFACSDSRVCPS 161 (334)
Q Consensus 84 ~~~~l~~~a~~~i~~~t~~l~~~~--~~~p~~~l~~Ll~GN~rF~~~~~~~~p~~~~~La~gQ~Pk~lVItCsDSRV~Pe 161 (334)
+..+|..+|++|++++|+||++.. ...+++++++|++||++|+..++.+++++|.+|++||+|+++||+||||||+|+
T Consensus 49 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~rf~~f~~~~~~~~~~~~~~La~GQ~P~~lvI~CsDSRV~Pe 128 (301)
T PLN03006 49 KATNLQVMASGKTPGLTQEANGVAIDRQNNTDVFDDMKQRFLAFKKLKYMDDFEHYKNLADAQAPKFLVIACADSRVCPS 128 (301)
T ss_pred cccchhhhhhhchHHHHHHHhhccCCCCCcccHHHHHHHHHHhchhhccccCHHHHHHhccCCCCCEEEEEeccCCCCHH
Confidence 456888999999999999999754 245899999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCCCcEEEEeccCCcCCCCCCcccchhHHHHHHHHHhcCcceEEEeccCCCCcccccccccCCCCCCchhHHHHHH
Q 019915 162 HVLDFQPGEAFVVRNVANIVPPYDQTKYAGVGAAVEYAVLHLKVSNIVVIGHSACGGIKGLMSFTFDGNNSTDFIEDWVK 241 (334)
Q Consensus 162 ~ifg~~pGD~FVvRNaGN~V~~~d~~~~~~v~ASLEyAV~~L~Vk~IVV~GHS~CGav~Aal~~~~~g~~~~~~I~~wl~ 241 (334)
.|||++|||+|||||+||+|+++|... .++.+||||||.+|+|++|||||||+||||+|+++..+.+ ...++|++|+.
T Consensus 129 ~Ifd~~pGDlFVVRNaGNiVpp~d~~~-~~~~aSLEYAV~~L~V~~IVV~GHs~CGaV~Aal~~~~~g-~~~~~I~~wv~ 206 (301)
T PLN03006 129 AVLGFQPGDAFTVRNIANLVPPYESGP-TETKAALEFSVNTLNVENILVIGHSRCGGIQALMKMEDEG-DSRSFIHNWVV 206 (301)
T ss_pred HHhCCCCCCEEEEeccccccCCccccc-cchhhhHHHHHHHhCCCEEEEecCCCchHHHHHhhccccC-CchhHHHHHHH
Confidence 999999999999999999999987532 4688999999999999999999999999999998765544 35679999999
Q ss_pred cccchhhhhhhhcCCCCchhhhhHHHHHHHHHHHHHhhhchHHHhhhhCCceEEEEEEEEccCCeEEEEeccCCCC
Q 019915 242 IGIPAKSKVLTEHGDKPFGDQCTYCEKEAVNVSLSNLLTYPFVREGLVNKTLALKGGYYDFVNGSFELWGLDFSLS 317 (334)
Q Consensus 242 ~~~pa~~~~~~~~~~~~~~e~~~~~~~enV~~qv~~L~s~P~I~~~v~~g~L~V~G~vYDi~TG~ve~~~~~~~~~ 317 (334)
.+.|++..+.+......+++++..|+++||++||++|++||+|++++++|+|+||||+||+.||+|+.|+++++.+
T Consensus 207 ~~~~a~~~v~~~~~~~~~~~~~~~~ekeNV~~sv~nL~~~P~V~~~v~~G~L~IhG~~Ydi~tG~l~~~~~~~~~~ 282 (301)
T PLN03006 207 VGKKAKESTKAVASNLHFDHQCQHCEKASINHSLERLLGYPWIEEKVRQGSLSLHGGYYNFVDCTFEKWTVDYAAS 282 (301)
T ss_pred HHHHHHHHHhhhhcccCHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHCCCcEEEEEEEECCCceEEEeccccccc
Confidence 8888876665433344577788889999999999999999999999999999999999999999999999999644
No 5
>PLN02154 carbonic anhydrase
Probab=100.00 E-value=3.4e-52 Score=395.65 Aligned_cols=214 Identities=40% Similarity=0.726 Sum_probs=182.2
Q ss_pred ChHHHHHHHHHHHHHHHhhhccCChhhHHhhhcCCCCcEEEEeecCCCCChhhhcCCCCCcEEEEeccCCcCCCCCCccc
Q 019915 110 KAFDSVERIKEGFIHFKREKYEKNPALYSELAKGQSPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQTKY 189 (334)
Q Consensus 110 ~p~~~l~~Ll~GN~rF~~~~~~~~p~~~~~La~gQ~Pk~lVItCsDSRV~Pe~ifg~~pGD~FVvRNaGN~V~~~d~~~~ 189 (334)
+..+.+++|++||++|+.+++..+++.|++|+.||+|+++||+||||||+|+.|||++|||+||+||+||+|++++.. .
T Consensus 71 ~~~~~l~~Ll~gf~~f~~~~~~~~~e~f~~La~GQ~P~~lvi~C~DSRV~pe~if~~~pGdlFvvRN~GNiv~~~~~g-~ 149 (290)
T PLN02154 71 TSYDFLDEMRHRFLKFKRQKYLPEIEKFKALAIAQSPKVMVIGCADSRVCPSYVLGFQPGEAFTIRNVANLVTPVQNG-P 149 (290)
T ss_pred hhHHHHHHHHHHHHHHhhccccccHHHHHHhccCCCCCEEEEEecCCCCCHHHHcCCCCCCEEEEeccCCccCCccCC-c
Confidence 445789999999999999999999999999999999999999999999999999999999999999999999987642 2
Q ss_pred chhHHHHHHHHHhcCcceEEEeccCCCCcccccccccCCCCCCchhHHHHHHcccchhhhhhhhcCCCCchhhhhHHHHH
Q 019915 190 AGVGAAVEYAVLHLKVSNIVVIGHSACGGIKGLMSFTFDGNNSTDFIEDWVKIGIPAKSKVLTEHGDKPFGDQCTYCEKE 269 (334)
Q Consensus 190 ~~v~ASLEyAV~~L~Vk~IVV~GHS~CGav~Aal~~~~~g~~~~~~I~~wl~~~~pa~~~~~~~~~~~~~~e~~~~~~~e 269 (334)
.+++++|||||.+|+|++|||||||+||||+|+++.........+++++|+..+.+++.+.....+...+.+.+..++++
T Consensus 150 ~~~~aslEyAv~~L~v~~IvV~GHs~CGAV~Aal~~~~~~~~~~~~v~~Wl~~~~~a~~~~~~~~~~~~~~~~~~~~e~~ 229 (290)
T PLN02154 150 TETNSALEFAVTTLQVENIIVMGHSNCGGIAALMSHQNHQGQHSSLVERWVMNGKAAKLRTQLASSHLSFDEQCRNCEKE 229 (290)
T ss_pred cchhhHHHHHHHHhCCCEEEEecCCCchHHHHHHhcCccccccchHHHHHHHHHHHHHHHHhhcccCCCHHHHHHHHHHH
Confidence 46889999999999999999999999999999986432222345789999987666654433222333456667778899
Q ss_pred HHHHHHHHhhhchHHHhhhhCCceEEEEEEEEccCCeEEEEeccCCCCCC-CCccc
Q 019915 270 AVNVSLSNLLTYPFVREGLVNKTLALKGGYYDFVNGSFELWGLDFSLSPP-LSVKD 324 (334)
Q Consensus 270 nV~~qv~~L~s~P~I~~~v~~g~L~V~G~vYDi~TG~ve~~~~~~~~~~~-~~~~~ 324 (334)
||+.||++|++||+|++++++|+|+||||+||+.||+|+.|+.+.+.... +.+||
T Consensus 230 NV~~qv~nL~t~P~I~e~v~~G~L~IhG~~Ydl~tG~l~~~~~~~~~f~~~~~~~~ 285 (290)
T PLN02154 230 SIKDSVMNLITYSWIRDRVKRGEVKIHGCYYNLSDCSLEKWRLSSDKTNYGFYISD 285 (290)
T ss_pred HHHHHHHHHhcCHHHHHHHHCCCcEEEEEEEECCCceEEEeccccCcccCceeecc
Confidence 99999999999999999999999999999999999999999998864433 44554
No 6
>cd00884 beta_CA_cladeB Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.
Probab=100.00 E-value=1.8e-52 Score=378.93 Aligned_cols=189 Identities=51% Similarity=0.812 Sum_probs=165.8
Q ss_pred HHHHHHhhhccCChhhHHhhhcCCCCcEEEEeecCCCCChhhhcCCCCCcEEEEeccCCcCCCCCCc-ccchhHHHHHHH
Q 019915 121 GFIHFKREKYEKNPALYSELAKGQSPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQT-KYAGVGAAVEYA 199 (334)
Q Consensus 121 GN~rF~~~~~~~~p~~~~~La~gQ~Pk~lVItCsDSRV~Pe~ifg~~pGD~FVvRNaGN~V~~~d~~-~~~~v~ASLEyA 199 (334)
||++|++..+..++++|+++++||+|+++|||||||||+|+.+||.+|||+||+||+||+|++++.. .+.+++++||||
T Consensus 1 G~~~f~~~~~~~~~~~~~~l~~gQ~P~~~~i~C~DsRv~~~~i~~~~~Gd~fv~Rn~gn~v~~~~~~~~~~~~~asleya 80 (190)
T cd00884 1 GFRRFRKEYFPEERELFEKLAKGQSPKALFIACSDSRVVPALITQTQPGELFVVRNVGNLVPPYEPDGGFHGTSAAIEYA 80 (190)
T ss_pred ChHHHHhhhhhhhHHHHHHhccCCCCCeEEEeeeCCCCCHHHHcCCCCCCEEEEeccCCcCCcccccccccchhhhHHHH
Confidence 7999999888888999999999999999999999999999999999999999999999999987531 235688999999
Q ss_pred HHhcCcceEEEeccCCCCcccccccccCCCCCCchhHHHHHHcccchhhhhhhhcCCCCchhhhhHHHHHHHHHHHHHhh
Q 019915 200 VLHLKVSNIVVIGHSACGGIKGLMSFTFDGNNSTDFIEDWVKIGIPAKSKVLTEHGDKPFGDQCTYCEKEAVNVSLSNLL 279 (334)
Q Consensus 200 V~~L~Vk~IVV~GHS~CGav~Aal~~~~~g~~~~~~I~~wl~~~~pa~~~~~~~~~~~~~~e~~~~~~~enV~~qv~~L~ 279 (334)
|.+|+|++|||||||+||||+|+++... +....+++..|+..+.|+........+..+..+..+.++++||++|+++|+
T Consensus 81 v~~l~v~~ivV~GH~~Cgav~Aa~~~~~-~~~~~~~l~~wl~~i~~~~~~~~~~~~~~~~~~~~~~~~~~NV~~qv~~L~ 159 (190)
T cd00884 81 VAVLKVEHIVVCGHSDCGGIRALLSPED-LLDKLPFIGKWLRIAEPAKEVVLAELSHADFDDQLRALEKENVLLSLENLL 159 (190)
T ss_pred HHHhCCCEEEEeCCCcchHHHHHhcccc-ccCCcchHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999986432 223456899999998888876655443344455667788999999999999
Q ss_pred hchHHHhhhhCCceEEEEEEEEccCCeEEEE
Q 019915 280 TYPFVREGLVNKTLALKGGYYDFVNGSFELW 310 (334)
Q Consensus 280 s~P~I~~~v~~g~L~V~G~vYDi~TG~ve~~ 310 (334)
++|+|++++++|+|+||||+||+.||+|+.+
T Consensus 160 ~~p~v~~~v~~g~l~i~G~~Ydi~tG~v~~~ 190 (190)
T cd00884 160 TYPFVRERLEAGTLSLHGWYYDIETGELYAY 190 (190)
T ss_pred hCHHHHHHHHCCCcEEEEEEEECCceEEEeC
Confidence 9999999999999999999999999999764
No 7
>PRK10437 carbonic anhydrase; Provisional
Probab=100.00 E-value=4.9e-52 Score=383.32 Aligned_cols=196 Identities=24% Similarity=0.379 Sum_probs=173.2
Q ss_pred HHHHHHHHHHHHHhhhccCChhhHHhhhcCCCCcEEEEeecCCCCChhhhcCCCCCcEEEEeccCCcCCCCCCcccchhH
Q 019915 114 SVERIKEGFIHFKREKYEKNPALYSELAKGQSPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQTKYAGVG 193 (334)
Q Consensus 114 ~l~~Ll~GN~rF~~~~~~~~p~~~~~La~gQ~Pk~lVItCsDSRV~Pe~ifg~~pGD~FVvRNaGN~V~~~d~~~~~~v~ 193 (334)
.+++|++||++|++..+..+|++|+++++||+|+++|||||||||+|+.+||++|||+||+||+||+|+++|. +++
T Consensus 3 ~~~~Ll~gN~~f~~~~~~~~~~~~~~~~~~q~p~~~~i~C~DSRv~p~~i~~~~~Gd~fv~Rn~gn~v~~~~~----~~~ 78 (220)
T PRK10437 3 DIDTLISNNALWSKMLVEEDPGFFEKLAQAQKPRFLWIGCSDSRVPAERLTGLEPGELFVHRNVANLVIHTDL----NCL 78 (220)
T ss_pred hHHHHHHHHHHHHHhhhccChHHHHhcccCCCCCEEEEEecccCCCHHHhcCCCCCcEEEEeecccccCCCCc----chH
Confidence 4889999999999998888899999999999999999999999999999999999999999999999998754 478
Q ss_pred HHHHHHHHhcCcceEEEeccCCCCcccccccccCCCCCCchhHHHHHHcccchhhhhhhhcCCCCchhhhhHHHHHHHHH
Q 019915 194 AAVEYAVLHLKVSNIVVIGHSACGGIKGLMSFTFDGNNSTDFIEDWVKIGIPAKSKVLTEHGDKPFGDQCTYCEKEAVNV 273 (334)
Q Consensus 194 ASLEyAV~~L~Vk~IVV~GHS~CGav~Aal~~~~~g~~~~~~I~~wl~~~~pa~~~~~~~~~~~~~~e~~~~~~~enV~~ 273 (334)
++|||||.+|||++|||||||+||||+|+++.. ..+++..|+..+.|++..........+..+..+.++++||+.
T Consensus 79 ~~leyAV~~L~v~~IvV~GHt~CG~V~Aal~~~-----~~~~i~~wl~~i~~~~~~~~~~~~~~~~~~~~~~l~e~NV~~ 153 (220)
T PRK10437 79 SVVQYAVDVLEVEHIIICGHYGCGGVQAAVENP-----ELGLINNWLLHIRDIWFKHSSLLGEMPQERRLDTLCELNVME 153 (220)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCchHHHHHHcCC-----CcccHHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHH
Confidence 999999999999999999999999999998642 236899999998888765444344444556667788999999
Q ss_pred HHHHhhhchHHHhhhhCC-ceEEEEEEEEccCCeEEEEeccCCCCC
Q 019915 274 SLSNLLTYPFVREGLVNK-TLALKGGYYDFVNGSFELWGLDFSLSP 318 (334)
Q Consensus 274 qv~~L~s~P~I~~~v~~g-~L~V~G~vYDi~TG~ve~~~~~~~~~~ 318 (334)
|+++|+++|+|++++++| +|.||||+||+.||+|+.++......+
T Consensus 154 qv~~L~~~p~v~~~~~~g~~l~IhG~~Ydl~tG~v~~l~~~~~~~~ 199 (220)
T PRK10437 154 QVYNLGHSTIMQSAWKRGQKVTIHGWAYGIHDGLLRDLDVTATNRE 199 (220)
T ss_pred HHHHHhhCHHHHHHHHCCCceEEEEEEEECCCcEEEEecCCCCchh
Confidence 999999999999999999 699999999999999999887665443
No 8
>KOG1578 consensus Predicted carbonic anhydrase involved in protection against oxidative damage [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.5e-52 Score=391.55 Aligned_cols=270 Identities=44% Similarity=0.706 Sum_probs=252.7
Q ss_pred CcccCCccccCCCcccCcchhhHhhhhhHHHHHHHHHHHhhhhcCcchhHhhhhHHHHHhhcCCCCCChHHHHHHHHHHH
Q 019915 43 SLIRNEPVFAAPAPIINPNWREDMANQSYEEAIEALKKLLKEKEDLKPVAAAKVEQITAQLQTPSDTKAFDSVERIKEGF 122 (334)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~i~~~t~~l~~~~~~~p~~~l~~Ll~GN 122 (334)
.|+|+.+.|..+.+...+.+..||..++|+.++..+.++|..+.++ +++++++++|++ .+.+++|++||
T Consensus 2 ~i~~~~~~~~~t~~~~~~~~~~~mp~~~~~~~~~~dsrml~~r~~~--~~~~~~~~~~~~---------~~~~~~i~~~F 70 (276)
T KOG1578|consen 2 EILRGVIRFRNTTRKDLVEEIRDMPSPTAVMFTCMDSRMLPTRYNL--VAAAKIKKLTAE---------FDTLEDIGDMF 70 (276)
T ss_pred ccccccchhhhhhHHHhHHHHHhCCCHHHHHHHHHHhhccchhhhh--hhhhhhhhhhhc---------cchHHHHHhhH
Confidence 3889999999999999998889999999999999999999999999 899999999993 57899999999
Q ss_pred HHHHhhhccCChhhHHhhhcCCCCcEEEEeecCCCCChhhhcCCCCCcEEEEeccCCcCCCCCCcccchhHHHHHHHHHh
Q 019915 123 IHFKREKYEKNPALYSELAKGQSPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQTKYAGVGAAVEYAVLH 202 (334)
Q Consensus 123 ~rF~~~~~~~~p~~~~~La~gQ~Pk~lVItCsDSRV~Pe~ifg~~pGD~FVvRNaGN~V~~~d~~~~~~v~ASLEyAV~~ 202 (334)
..|.++.+.++|.+|..++++|+|+.+||+|+||||+|++|++++|||.|++||++|+++|+|...+.+++|+|||+|.+
T Consensus 71 v~~~~~~~~~~p~~f~~~~~~qsp~~l~i~csdsRv~~shIL~~~pge~f~irniaNlv~p~~~~~~~~~~AalE~aV~~ 150 (276)
T KOG1578|consen 71 VVRNSGNYIPNPTLFGALAKSQSPEPLALECSDSRVCISHILVCGPGECFAIRNIANLVPPPDKSKPTNVGAALEYAVTT 150 (276)
T ss_pred hhhccccCCCChhhhHHHhccCCCcceEEEeccccCCCceEEEecCchHhHHHHHHhccCcccccCcccccchHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999888888899999999999
Q ss_pred cCcceEEEeccCCCCcccccccccCCCCCCchhHHHHHHcccchhhhhhhhcCCCCchhhhhHHHHHHHHHHHHHhhhch
Q 019915 203 LKVSNIVVIGHSACGGIKGLMSFTFDGNNSTDFIEDWVKIGIPAKSKVLTEHGDKPFGDQCTYCEKEAVNVSLSNLLTYP 282 (334)
Q Consensus 203 L~Vk~IVV~GHS~CGav~Aal~~~~~g~~~~~~I~~wl~~~~pa~~~~~~~~~~~~~~e~~~~~~~enV~~qv~~L~s~P 282 (334)
|+|++|+||||++|||++++|....++. ...|+.+|+.+..+++..+++++..+.|.+||..|+.++++.++.+|.+||
T Consensus 151 lkvenIiv~ghs~cgGik~~m~~~~~~~-~~~f~~~wv~id~~~kl~~e~~~s~i~~~~Q~~n~~~~a~~~s~~~l~sy~ 229 (276)
T KOG1578|consen 151 LKVENIIVIGHSLCGGIKGLMSFSLEAP-SRSFIENWVYIDPEAKLAVEDKLSQINFLQQCENCESEAFLVSLARLLSYP 229 (276)
T ss_pred hccceEEEeccccCCchhhcccccccCc-chhhhhhheeeChHHHHHHHhHHhhchHHHHHHHHHHHHHHHHHHHHhcCh
Confidence 9999999999999999999998877665 678999999999999988888888899999999999999999999999999
Q ss_pred HHHhhhhCCceEEEEEEEEccCCeEEEEeccCCCCCCCCccc
Q 019915 283 FVREGLVNKTLALKGGYYDFVNGSFELWGLDFSLSPPLSVKD 324 (334)
Q Consensus 283 ~I~~~v~~g~L~V~G~vYDi~TG~ve~~~~~~~~~~~~~~~~ 324 (334)
++++++.+|.+++||++||+..|.+++|..+.+....+..++
T Consensus 230 ~vr~~v~k~~l~~~G~~Y~fskg~~~~~~ldekt~~~~~~~~ 271 (276)
T KOG1578|consen 230 FVREAVVKGFLQVHGGYYNFSKGTKEFWELDEKTVDGLKTEK 271 (276)
T ss_pred HHHHHHhhcceeeeeeeEEeccCceeEEEecccccccccccc
Confidence 999999999999999999999999999999965554444443
No 9
>cd00883 beta_CA_cladeA Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.
Probab=100.00 E-value=2e-51 Score=369.51 Aligned_cols=179 Identities=31% Similarity=0.506 Sum_probs=156.9
Q ss_pred HHHHHhhhccCChhhHHhhhcCCCCcEEEEeecCCCCChhhhcCCCCCcEEEEeccCCcCCCCCCcccchhHHHHHHHHH
Q 019915 122 FIHFKREKYEKNPALYSELAKGQSPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQTKYAGVGAAVEYAVL 201 (334)
Q Consensus 122 N~rF~~~~~~~~p~~~~~La~gQ~Pk~lVItCsDSRV~Pe~ifg~~pGD~FVvRNaGN~V~~~d~~~~~~v~ASLEyAV~ 201 (334)
|++|++..+.++|++|++++.||+|+++|||||||||+|+.+||.+|||+||+||+||+|++++. ++.+||||||.
T Consensus 1 n~~f~~~~~~~~~~~~~~l~~gQ~P~~~vi~CsDSRv~pe~if~~~~GdlFViRnaGN~v~~~~~----~~~asleyAv~ 76 (182)
T cd00883 1 NRAWAEEKKAKDPDFFPRLAKGQTPEYLWIGCSDSRVPENTILGLLPGEVFVHRNIANLVSPTDL----NCLSVLQYAVD 76 (182)
T ss_pred ChhhhhhccccCHHHHHHhhcCCCCCEEEEEecCCCCCHHHhcCCCCCCEEEEEeeccccCCCCc----chhhhHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999998754 47899999999
Q ss_pred hcCcceEEEeccCCCCcccccccccCCCCCCchhHHHHHHcccchhhhhhhhcCCC-CchhhhhHHHHHHHHHHHHHhhh
Q 019915 202 HLKVSNIVVIGHSACGGIKGLMSFTFDGNNSTDFIEDWVKIGIPAKSKVLTEHGDK-PFGDQCTYCEKEAVNVSLSNLLT 280 (334)
Q Consensus 202 ~L~Vk~IVV~GHS~CGav~Aal~~~~~g~~~~~~I~~wl~~~~pa~~~~~~~~~~~-~~~e~~~~~~~enV~~qv~~L~s 280 (334)
+|||++|||||||+||||+|+++.. ..+++.+|+....++........... +..+....++++||++|+++|++
T Consensus 77 ~L~v~~IvV~GHs~CGav~a~~~~~-----~~~~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nV~~~v~~L~~ 151 (182)
T cd00883 77 VLKVKHIIVCGHYGCGGVKAALTGK-----RLGLLDNWLRPIRDVYRLHAAELDALEDEEERVDRLVELNVVEQVKNLCK 151 (182)
T ss_pred hcCCCEEEEecCCCchHHHHHHcCC-----CCccHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999987642 24689999988777665433222221 33445567889999999999999
Q ss_pred chHHHhhhhC-CceEEEEEEEEccCCeEEE
Q 019915 281 YPFVREGLVN-KTLALKGGYYDFVNGSFEL 309 (334)
Q Consensus 281 ~P~I~~~v~~-g~L~V~G~vYDi~TG~ve~ 309 (334)
+|+|++++++ |+|.||||+||+.||+|+.
T Consensus 152 ~p~i~~~~~~~~~l~I~G~~ydi~tG~v~~ 181 (182)
T cd00883 152 TPIVQDAWKRGQELEVHGWVYDLGDGLLRD 181 (182)
T ss_pred CHHHHHHHHcCCCeEEEEEEEEcCccEEEe
Confidence 9999999999 8999999999999999975
No 10
>PRK15219 carbonic anhydrase; Provisional
Probab=100.00 E-value=6.9e-51 Score=381.14 Aligned_cols=190 Identities=22% Similarity=0.325 Sum_probs=162.5
Q ss_pred CCChHHHHHHHHHHHHHHHhhhccCChhhH---HhhhcCCCCcEEEEeecCCCCChhhhcCCCCCcEEEEeccCCcCCCC
Q 019915 108 DTKAFDSVERIKEGFIHFKREKYEKNPALY---SELAKGQSPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPY 184 (334)
Q Consensus 108 ~~~p~~~l~~Ll~GN~rF~~~~~~~~p~~~---~~La~gQ~Pk~lVItCsDSRV~Pe~ifg~~pGD~FVvRNaGN~V~~~ 184 (334)
..+|.+++++|++||+||+++.+. +++++ .++++||+|+++|||||||||+||.+||.+|||+||+||+||+|++
T Consensus 50 ~~~p~~al~~L~~GN~rF~~~~~~-~~~~~~~~~~la~gQ~P~a~vi~CsDSRV~pe~ifd~~~GdlFvvRnaGN~v~~- 127 (245)
T PRK15219 50 KMTPDQIIESLKQGNKRFRSGKPA-QHDYLAQKRASAAGQYPAAVILSCIDSRAPAEIILDTGIGETFNSRVAGNISND- 127 (245)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCcC-CchhhHHhhhhccCCCCeEEEEecccCCCCHHHHhCCCCCcEEEEeccccccCc-
Confidence 378999999999999999998864 44433 2467899999999999999999999999999999999999999975
Q ss_pred CCcccchhHHHHHHHHHhcCcceEEEeccCCCCcccccccccCCCCCCchhHHHHHHcccchhhhhhhhc-CCCCchhhh
Q 019915 185 DQTKYAGVGAAVEYAVLHLKVSNIVVIGHSACGGIKGLMSFTFDGNNSTDFIEDWVKIGIPAKSKVLTEH-GDKPFGDQC 263 (334)
Q Consensus 185 d~~~~~~v~ASLEyAV~~L~Vk~IVV~GHS~CGav~Aal~~~~~g~~~~~~I~~wl~~~~pa~~~~~~~~-~~~~~~e~~ 263 (334)
.+++||||||.+|||++|||||||+||||+|+++... .+++..|++.+.|++....... ...+..+.+
T Consensus 128 ------~~~~slEyAv~~L~v~~IvVlGHt~CGav~Aa~~~~~-----~g~l~~wl~~i~pa~~~~~~~~~~~~~~~~~~ 196 (245)
T PRK15219 128 ------DLLGSMEFACAVAGAKVVLVMGHTACGAVKGAIDNVE-----LGNLTGLLDRIKPAIEVTEFDGERSSKNYKFV 196 (245)
T ss_pred ------chhhHHHHHHHHcCCCEEEEecCCcchHHHHHHhcCC-----cchHHHHHHHHHHHHHHHhhcccccCCHHHHH
Confidence 2678999999999999999999999999999986432 4589999999999886543211 111234556
Q ss_pred hHHHHHHHHHHHHHhhh-chHHHhhhhCCceEEEEEEEEccCCeEEEE
Q 019915 264 TYCEKEAVNVSLSNLLT-YPFVREGLVNKTLALKGGYYDFVNGSFELW 310 (334)
Q Consensus 264 ~~~~~enV~~qv~~L~s-~P~I~~~v~~g~L~V~G~vYDi~TG~ve~~ 310 (334)
+.++++||+.|+++|++ +|++++++++|+|+||||+||++||+|+++
T Consensus 197 ~~~~~~NV~~qv~~L~~~~pv~~~~v~~g~l~I~G~~Ydl~tG~V~~l 244 (245)
T PRK15219 197 DAVARKNVELTIENIRKNSPILRKLEQEGKIKIVGSMYNLNGGKVEFF 244 (245)
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHCCCcEEEEEEEECCCeEEEee
Confidence 67889999999999986 899999999999999999999999999986
No 11
>COG0288 CynT Carbonic anhydrase [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.3e-50 Score=371.20 Aligned_cols=199 Identities=32% Similarity=0.493 Sum_probs=168.3
Q ss_pred HHHHHHHHHHHHHHhhhccCChhhHHhhh-cCCCCcEEEEeecCCCCChhhhcCCCCCcEEEEeccCCcCCCCCCcccch
Q 019915 113 DSVERIKEGFIHFKREKYEKNPALYSELA-KGQSPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQTKYAG 191 (334)
Q Consensus 113 ~~l~~Ll~GN~rF~~~~~~~~p~~~~~La-~gQ~Pk~lVItCsDSRV~Pe~ifg~~pGD~FVvRNaGN~V~~~d~~~~~~ 191 (334)
..+++|++||++|.++.+..++.+|..++ ++|+|+++|||||||||+||.+||++|||+||+||+||+|++++ .+
T Consensus 2 ~~~~~ll~gn~~f~~~~~~~~~~~~~~l~~~~Q~P~~lii~C~DSRv~~e~i~~~~pGdlfV~RNaGniV~~~~----~~ 77 (207)
T COG0288 2 SALKDLLAGNQRFAEGKFPEQSALFRKLADKGQSPKALIITCSDSRVPPELITGLGPGDLFVIRNAGNIVTHPD----GS 77 (207)
T ss_pred cHHHHHHHHHHHHHhcccccchHHHHHHhccCCCCcEEEEEEccCCCCHHHHhCCCCccEEEEeecccccCCCc----cc
Confidence 46899999999999999888899998876 56999999999999999999999999999999999999999875 35
Q ss_pred hHHHHHHHHHhcCcceEEEeccCCCCcccccccccCCCCCCchhHHHHHHcccchhhhhhhhcCCCCch-hhhhHHHHHH
Q 019915 192 VGAAVEYAVLHLKVSNIVVIGHSACGGIKGLMSFTFDGNNSTDFIEDWVKIGIPAKSKVLTEHGDKPFG-DQCTYCEKEA 270 (334)
Q Consensus 192 v~ASLEyAV~~L~Vk~IVV~GHS~CGav~Aal~~~~~g~~~~~~I~~wl~~~~pa~~~~~~~~~~~~~~-e~~~~~~~en 270 (334)
+++||||||.+|||++|||||||+|||++|+++....+.. .+.+|+....+.........+..... ++....++.|
T Consensus 78 ~l~sleyAv~~L~v~~IiV~GH~~CGav~aa~~~~~~~~~---~i~~wl~~i~~~~~~~~~~~~~~~~~~~~~~~~~e~n 154 (207)
T COG0288 78 VLRSLEYAVYVLGVKEIIVCGHTDCGAVKAALDDQLEGLK---PIPGWLLHIEDLAYAVSNLLGELPGEEDRSDELVEDN 154 (207)
T ss_pred hhHHHHHHHHHcCCCEEEEecCCCcHHHHhcccccccccc---ccchhhhHHHHHHHHhhcchhhccchhhhhhhHHHHH
Confidence 8999999999999999999999999999999876554432 68999977666654443332222222 4455667899
Q ss_pred HHHHHHHhhhchHHHhhhhCCc-eEEEEEEEEccCCeEEEEeccCCCCC
Q 019915 271 VNVSLSNLLTYPFVREGLVNKT-LALKGGYYDFVNGSFELWGLDFSLSP 318 (334)
Q Consensus 271 V~~qv~~L~s~P~I~~~v~~g~-L~V~G~vYDi~TG~ve~~~~~~~~~~ 318 (334)
|++||++|+++|.|++++..++ |.||||+||++||+++.++......+
T Consensus 155 V~~qv~~L~~~p~v~~~~~~~~~l~vhG~~y~i~~G~l~~~~~~~~~~~ 203 (207)
T COG0288 155 VREQVANLRTHPIVQSALVRGQKVAVHGWVYDIETGRLYVVDVATIDFE 203 (207)
T ss_pred HHHHHHHHhcCCchhhhhhcCceEEEEEEEEecCCceEEEEeccccccc
Confidence 9999999999999999988877 99999999999999998887765444
No 12
>cd03378 beta_CA_cladeC Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.
Probab=100.00 E-value=3.6e-46 Score=327.64 Aligned_cols=150 Identities=35% Similarity=0.531 Sum_probs=136.6
Q ss_pred hHHHHHHHHHHHHHHHhhhccC---ChhhHHhhhcCCCCcEEEEeecCCCCChhhhcCCCCCcEEEEeccCCcCCCCCCc
Q 019915 111 AFDSVERIKEGFIHFKREKYEK---NPALYSELAKGQSPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQT 187 (334)
Q Consensus 111 p~~~l~~Ll~GN~rF~~~~~~~---~p~~~~~La~gQ~Pk~lVItCsDSRV~Pe~ifg~~pGD~FVvRNaGN~V~~~d~~ 187 (334)
|.+++++|++||++|.+++... .++.|.+++++|+|+++||||||||++|+.+||++|||+||+||+||+|++
T Consensus 1 p~~~~~~Ll~gN~~f~~~~~~~~~~~~~~~~~l~~~q~P~~~vitC~DsRv~~~~i~~~~~Gd~fviRn~gn~v~~---- 76 (154)
T cd03378 1 PDEALERLKEGNKRFVSGKPLHPDQDLARRRELAKGQKPFAVILSCSDSRVPPEIIFDQGLGDLFVVRVAGNIVDD---- 76 (154)
T ss_pred ChHHHHHHHHHHHHHHhcCccCccccHHHHHHhccCCCCcEEEEEcCCCCCCHHHHcCCCCCCEEEEeccccccCh----
Confidence 5688999999999999876431 256688999999999999999999999999999999999999999999986
Q ss_pred ccchhHHHHHHHHHhcCcceEEEeccCCCCcccccccccCCCCCCchhHHHHHHcccchhhhhhhhcCCCCchhhhhHHH
Q 019915 188 KYAGVGAAVEYAVLHLKVSNIVVIGHSACGGIKGLMSFTFDGNNSTDFIEDWVKIGIPAKSKVLTEHGDKPFGDQCTYCE 267 (334)
Q Consensus 188 ~~~~v~ASLEyAV~~L~Vk~IVV~GHS~CGav~Aal~~~~~g~~~~~~I~~wl~~~~pa~~~~~~~~~~~~~~e~~~~~~ 267 (334)
++++|||||+.+|||++|||||||+||+++++ ++
T Consensus 77 ---~~~~sl~yav~~l~v~~IvV~GHt~CG~~~a~-------------------------------------------~~ 110 (154)
T cd03378 77 ---DVLGSLEYAVEVLGVPLVVVLGHESCGAVAAA-------------------------------------------AV 110 (154)
T ss_pred ---hHHHHHHHHHHHhCCCEEEEEcCCCccHHHHH-------------------------------------------HH
Confidence 37899999999999999999999999999864 34
Q ss_pred HHHHHHHHHHhhhchHHHh-hhhCCceEEEEEEEEccCCeEEEE
Q 019915 268 KEAVNVSLSNLLTYPFVRE-GLVNKTLALKGGYYDFVNGSFELW 310 (334)
Q Consensus 268 ~enV~~qv~~L~s~P~I~~-~v~~g~L~V~G~vYDi~TG~ve~~ 310 (334)
++||+.|+++|+++|+|++ ++++|+|.||||+||++||+|+++
T Consensus 111 ~~nV~~~v~~L~~~p~i~~~~~~~g~l~v~G~vyd~~tG~v~~~ 154 (154)
T cd03378 111 RANVKATVAKLRSRSPIIAELVAAGKLKIVGAYYDLDTGKVEFL 154 (154)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHcCCcEEEEEEEECCCcEEEeC
Confidence 6899999999999999988 999999999999999999999863
No 13
>PF00484 Pro_CA: Carbonic anhydrase; InterPro: IPR001765 Carbonic anhydrases (4.2.1.1 from EC) (CA) are zinc metalloenzymes which catalyze the reversible hydration of carbon dioxide. In Escherichia coli, CA (gene cynT) is involved in recycling carbon dioxide formed in the bicarbonate-dependent decomposition of cyanate by cyanase (gene cynS). By this action, it prevents the depletion of cellular bicarbonate []. In photosynthetic bacteria and plant chloroplast, CA is essential to inorganic carbon fixation []. Prokaryotic and plant chloroplast CA are structurally and evolutionary related and form a family distinct from the one which groups the many different forms of eukaryotic CA's (see IPR001148 from INTERPRO). Hypothetical proteins yadF from Escherichia coli and HI1301 from Haemophilus influenzae also belong to this family. This family also includes, YbcF and related proteins, which are inactive homologues of bacterial carbonic anhydrase.; GO: 0004089 carbonate dehydratase activity, 0008270 zinc ion binding; PDB: 1DDZ_B 3LAS_A 2W3N_A 2W3Q_A 1G5C_F 3E2A_A 3E2X_B 2A8C_A 2A8D_D 3E3F_A ....
Probab=100.00 E-value=1.3e-42 Score=301.59 Aligned_cols=152 Identities=34% Similarity=0.564 Sum_probs=121.7
Q ss_pred EEEEeecCCCCChhhhcCCCCCcEEEEeccCCcCCCCCCcccchhHHHHHHHHHhcCcceEEEeccCCCCcccccccccC
Q 019915 148 YMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQTKYAGVGAAVEYAVLHLKVSNIVVIGHSACGGIKGLMSFTF 227 (334)
Q Consensus 148 ~lVItCsDSRV~Pe~ifg~~pGD~FVvRNaGN~V~~~d~~~~~~v~ASLEyAV~~L~Vk~IVV~GHS~CGav~Aal~~~~ 227 (334)
++||||||||++|+.+||.+|||+||+||+||+|++.+ .++++|||||+.+||+++|||||||+|||+++++....
T Consensus 1 a~vi~C~DsR~~~~~~~~~~~Gd~fviRnaGn~v~~~~----~~~~~sle~av~~l~v~~IiV~gHt~CGa~~~~~~~~~ 76 (153)
T PF00484_consen 1 ALVITCSDSRVPPEEIFGLKPGDLFVIRNAGNRVPPPD----DSALASLEYAVYHLGVKEIIVCGHTDCGAIKAALDSEE 76 (153)
T ss_dssp EEEEEETTTTSTHHHHHTS-TTSEEEEEETTG---TT-----HHHHHHHHHHHHTST-SEEEEEEETT-HHHHHHHHHSH
T ss_pred CEEEEEcCCCCCHHHHhCCCCcceeeeeEEeeecCccc----cchhhheeeeeecCCCCEEEEEcCCCchHHHHHHhhcc
Confidence 58999999999999999999999999999999998764 46889999999999999999999999999998875321
Q ss_pred CCCCCchhHHHHHHcccchhhhhhhhc-CCCCchhhhhHHHHHHHHHHHHHhhhchHHHhhhhCCceEEEEEEEEccCCe
Q 019915 228 DGNNSTDFIEDWVKIGIPAKSKVLTEH-GDKPFGDQCTYCEKEAVNVSLSNLLTYPFVREGLVNKTLALKGGYYDFVNGS 306 (334)
Q Consensus 228 ~g~~~~~~I~~wl~~~~pa~~~~~~~~-~~~~~~e~~~~~~~enV~~qv~~L~s~P~I~~~v~~g~L~V~G~vYDi~TG~ 306 (334)
..+.+++|++...|+......+. ......+.....+++||++|+++|+++|+|++++++|++.||||+||++||+
T Consensus 77 ----~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nV~~~v~~L~~~p~i~~~~~~~~l~v~G~~ydi~tG~ 152 (153)
T PF00484_consen 77 ----EDGFLRDWLQKIRPALEECVDELLPSSWDFEDLDDLVEENVRQQVENLRSHPLIPDAVAKGKLKVHGFVYDIKTGK 152 (153)
T ss_dssp ----TCSHHHHHHHHHHHHHHHTHHHHHTTSSHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHTTSSEEEEEEEETTTTE
T ss_pred ----ccchHHHHHHhhhhhHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHCCCCEEEEEEEECCCcc
Confidence 34689999998888776522221 2211122233447899999999999999999999999999999999999998
Q ss_pred E
Q 019915 307 F 307 (334)
Q Consensus 307 v 307 (334)
|
T Consensus 153 v 153 (153)
T PF00484_consen 153 V 153 (153)
T ss_dssp E
T ss_pred C
Confidence 6
No 14
>cd00382 beta_CA Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.
Probab=100.00 E-value=6.9e-41 Score=282.30 Aligned_cols=119 Identities=42% Similarity=0.744 Sum_probs=111.8
Q ss_pred CCCcEEEEeecCCCCChhhhcCCCCCcEEEEeccCCcCCCCCCcccchhHHHHHHHHHhcCcceEEEeccCCCCcccccc
Q 019915 144 QSPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQTKYAGVGAAVEYAVLHLKVSNIVVIGHSACGGIKGLM 223 (334)
Q Consensus 144 Q~Pk~lVItCsDSRV~Pe~ifg~~pGD~FVvRNaGN~V~~~d~~~~~~v~ASLEyAV~~L~Vk~IVV~GHS~CGav~Aal 223 (334)
|+|+++||||||||++|+.+||++|||+||+||+||+|++++ .++++|||||+.+||+++|+|||||+|||+++
T Consensus 1 q~p~~~vltC~DsRv~~~~~~~~~~Gd~fv~Rn~Gn~v~~~~----~~~~~sl~~av~~l~v~~ivV~gHt~CG~v~a-- 74 (119)
T cd00382 1 QKPKALIIGCSDSRVPPELIFGLGPGDLFVVRNAGNLVPPYD----LDVLASLEYAVEVLGVKHIIVCGHTDCGAVKA-- 74 (119)
T ss_pred CCCeEEEEEeeCCCCCHHHHhCCCCCCEEEEeccCCcCCCCc----ccHHHHHHHHHHhhCCCEEEEEccCCCcHHHH--
Confidence 789999999999999999999999999999999999999764 35889999999999999999999999999875
Q ss_pred cccCCCCCCchhHHHHHHcccchhhhhhhhcCCCCchhhhhHHHHHHHHHHHHHhhhchHHHhhhhCCceEEEEEEEEcc
Q 019915 224 SFTFDGNNSTDFIEDWVKIGIPAKSKVLTEHGDKPFGDQCTYCEKEAVNVSLSNLLTYPFVREGLVNKTLALKGGYYDFV 303 (334)
Q Consensus 224 ~~~~~g~~~~~~I~~wl~~~~pa~~~~~~~~~~~~~~e~~~~~~~enV~~qv~~L~s~P~I~~~v~~g~L~V~G~vYDi~ 303 (334)
..++||++|+++|+++|+++++++++++.|||++||++
T Consensus 75 ------------------------------------------~~~~nV~~~v~~L~~~p~i~~a~~~~~l~V~G~~ydi~ 112 (119)
T cd00382 75 ------------------------------------------LVEENVREQVENLRSHPLIQEAVAPGELKVHGWVYDIE 112 (119)
T ss_pred ------------------------------------------HHHHHHHHHHHHHHhCHHHHHHHHCCCCEEEEEEEECC
Confidence 24679999999999999999999999999999999999
Q ss_pred CCeEEEE
Q 019915 304 NGSFELW 310 (334)
Q Consensus 304 TG~ve~~ 310 (334)
||+++++
T Consensus 113 tG~v~~~ 119 (119)
T cd00382 113 TGKLEVL 119 (119)
T ss_pred CCEEEeC
Confidence 9999864
No 15
>cd03379 beta_CA_cladeD Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.
Probab=100.00 E-value=5.4e-38 Score=271.94 Aligned_cols=141 Identities=23% Similarity=0.285 Sum_probs=112.3
Q ss_pred CCCcEEEEeecCCCCChhhhcCCCCCcEEEEeccCCcCCCCCCcccchhHHHHHHHHHhcCcceEEEeccCCCCcccccc
Q 019915 144 QSPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQTKYAGVGAAVEYAVLHLKVSNIVVIGHSACGGIKGLM 223 (334)
Q Consensus 144 Q~Pk~lVItCsDSRV~Pe~ifg~~pGD~FVvRNaGN~V~~~d~~~~~~v~ASLEyAV~~L~Vk~IVV~GHS~CGav~Aal 223 (334)
+.++++||||||||++|+.+||.+|||+||+||+||+|++ ++++|||||+.+||+++|+|||||+|||++++.
T Consensus 1 ~~~~~~vitC~DsRv~~e~i~~~~~GdlfviRnaGn~V~~-------~~~~sl~~av~~l~~~~IiV~gHt~Cg~~~a~~ 73 (142)
T cd03379 1 PARKLAIVTCMDARLDPEKALGLKLGDAKVIRNAGGRVTD-------DAIRSLVVSVYLLGTREIIVIHHTDCGMLTFTD 73 (142)
T ss_pred CCceEEEEEEeCCCCCHHHHcCCCCCcEEEEeccCCccCH-------hHHHHHHHHHHHhCCCEEEEEeecCCcceEecH
Confidence 3579999999999999999999999999999999999986 377899999999999999999999999999864
Q ss_pred cccCCCCCCchhHHHHHHcccchhhhhhhhcCCCCchhhhhHHHHHHHHHHHHHhhhchHHHhhhhCCceEEEEEEEEcc
Q 019915 224 SFTFDGNNSTDFIEDWVKIGIPAKSKVLTEHGDKPFGDQCTYCEKEAVNVSLSNLLTYPFVREGLVNKTLALKGGYYDFV 303 (334)
Q Consensus 224 ~~~~~g~~~~~~I~~wl~~~~pa~~~~~~~~~~~~~~e~~~~~~~enV~~qv~~L~s~P~I~~~v~~g~L~V~G~vYDi~ 303 (334)
+ .+..|+............ ...+.......+++||+.|+++|+++|+|++ +++||||+||++
T Consensus 74 ~----------~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~nV~~~v~~L~~~p~i~~-----~i~V~G~~ydi~ 135 (142)
T cd03379 74 E----------ELKEKMKERGIAEAYGGI---DKEFWFLGFDDLEESVREDVERIRNHPLIPD-----DVPVHGYVYDVK 135 (142)
T ss_pred H----------HHHHHHHHhcCcchhccc---CcchhhcccccHHHHHHHHHHHHHhCcCccC-----CCEEEEEEEECC
Confidence 2 245566532111100000 0111111234568999999999999999994 899999999999
Q ss_pred CCeEEE
Q 019915 304 NGSFEL 309 (334)
Q Consensus 304 TG~ve~ 309 (334)
||+++.
T Consensus 136 tG~v~~ 141 (142)
T cd03379 136 TGKLTE 141 (142)
T ss_pred CCEEEe
Confidence 999975
No 16
>KOG1578 consensus Predicted carbonic anhydrase involved in protection against oxidative damage [Inorganic ion transport and metabolism]
Probab=98.23 E-value=3.6e-08 Score=93.58 Aligned_cols=191 Identities=21% Similarity=0.251 Sum_probs=121.3
Q ss_pred HHHHHHHHHhhhccCChhhHHhhhcCCCCcEEEEeecCCCCChhhh----------------cCCCCCcEEEEeccCCcC
Q 019915 118 IKEGFIHFKREKYEKNPALYSELAKGQSPKYMVFACSDSRVCPSHV----------------LDFQPGEAFVVRNVANIV 181 (334)
Q Consensus 118 Ll~GN~rF~~~~~~~~p~~~~~La~gQ~Pk~lVItCsDSRV~Pe~i----------------fg~~pGD~FVvRNaGN~V 181 (334)
|+.|..+|+..... ++..++..-++|.+..++|+|||+-|... +..+.||.||+||.||.+
T Consensus 3 i~~~~~~~~~t~~~---~~~~~~~~mp~~~~~~~~~~dsrml~~r~~~~~~~~~~~~~~~~~~~~~i~~~Fv~~~~~~~~ 79 (276)
T KOG1578|consen 3 ILRGVIRFRNTTRK---DLVEEIRDMPSPTAVMFTCMDSRMLPTRYNLVAAAKIKKLTAEFDTLEDIGDMFVVRNSGNYI 79 (276)
T ss_pred cccccchhhhhhHH---HhHHHHHhCCCHHHHHHHHHHhhccchhhhhhhhhhhhhhhhccchHHHHHhhHhhhccccCC
Confidence 67788888876543 22356677789999999999999999776 667899999999999999
Q ss_pred CCCCCc-----ccchhHHHHHHHHHhcCcceEEEeccCCCCcccccccccC--CC---CCCchhHHHHHHccc-------
Q 019915 182 PPYDQT-----KYAGVGAAVEYAVLHLKVSNIVVIGHSACGGIKGLMSFTF--DG---NNSTDFIEDWVKIGI------- 244 (334)
Q Consensus 182 ~~~d~~-----~~~~v~ASLEyAV~~L~Vk~IVV~GHS~CGav~Aal~~~~--~g---~~~~~~I~~wl~~~~------- 244 (334)
+....- ..+--.++|+.|+......||+||||++|-+++...+... +. ......++.|+....
T Consensus 80 ~~p~~f~~~~~~qsp~~l~i~csdsRv~~shIL~~~pge~f~irniaNlv~p~~~~~~~~~~AalE~aV~~lkvenIiv~ 159 (276)
T KOG1578|consen 80 PNPTLFGALAKSQSPEPLALECSDSRVCISHILVCGPGECFAIRNIANLVPPPDKSKPTNVGAALEYAVTTLKVENIIVI 159 (276)
T ss_pred CChhhhHHHhccCCCcceEEEeccccCCCceEEEecCchHhHHHHHHhccCcccccCcccccchHHHHHHHhccceEEEe
Confidence 864210 0011124678888888899999999999999997544322 11 122356888986321
Q ss_pred --ch------hhhhhhhcCCCCchh-hh-----------hHHHHHHHHHHHHHhhhchHHH--hhhhCCceEEEE--EEE
Q 019915 245 --PA------KSKVLTEHGDKPFGD-QC-----------TYCEKEAVNVSLSNLLTYPFVR--EGLVNKTLALKG--GYY 300 (334)
Q Consensus 245 --pa------~~~~~~~~~~~~~~e-~~-----------~~~~~enV~~qv~~L~s~P~I~--~~v~~g~L~V~G--~vY 300 (334)
.. ......+-+..+|.+ |. ..+...|..+|.+|..++.+.. ..+.......+| -+.
T Consensus 160 ghs~cgGik~~m~~~~~~~~~~f~~~wv~id~~~kl~~e~~~s~i~~~~Q~~n~~~~a~~~s~~~l~sy~~vr~~v~k~~ 239 (276)
T KOG1578|consen 160 GHSLCGGIKGLMSFSLEAPSRSFIENWVYIDPEAKLAVEDKLSQINFLQQCENCESEAFLVSLARLLSYPFVREAVVKGF 239 (276)
T ss_pred ccccCCchhhcccccccCcchhhhhhheeeChHHHHHHHhHHhhchHHHHHHHHHHHHHHHHHHHHhcChHHHHHHhhcc
Confidence 00 000001111112221 10 1223456788999998877776 455556566666 555
Q ss_pred EccCCeEEEEe
Q 019915 301 DFVNGSFELWG 311 (334)
Q Consensus 301 Di~TG~ve~~~ 311 (334)
+...|..+-+.
T Consensus 240 l~~~G~~Y~fs 250 (276)
T KOG1578|consen 240 LQVHGGYYNFS 250 (276)
T ss_pred eeeeeeeEEec
Confidence 56666554443
No 17
>COG1254 AcyP Acylphosphatases [Energy production and conversion]
Probab=66.75 E-value=4.7 Score=32.88 Aligned_cols=21 Identities=29% Similarity=0.346 Sum_probs=18.2
Q ss_pred ceEEEEEEEEccCCeEEEEec
Q 019915 292 TLALKGGYYDFVNGSFELWGL 312 (334)
Q Consensus 292 ~L~V~G~vYDi~TG~ve~~~~ 312 (334)
++.|+||+++..+|+|+.+-.
T Consensus 29 ~lgl~G~V~N~~DGsVeiva~ 49 (92)
T COG1254 29 RLGLTGWVKNLDDGSVEIVAE 49 (92)
T ss_pred HCCCEEEEEECCCCeEEEEEE
Confidence 466999999999999998754
No 18
>PF12778 PXPV: PXPV repeat (3 copies)
Probab=60.97 E-value=4.4 Score=24.70 Aligned_cols=18 Identities=39% Similarity=0.872 Sum_probs=13.7
Q ss_pred CCCcccCCccccCCCccc
Q 019915 41 PPSLIRNEPVFAAPAPII 58 (334)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~ 58 (334)
.|..++-+||+.||+|.+
T Consensus 4 ~PVy~~PaPVyvaP~P~~ 21 (22)
T PF12778_consen 4 APVYVAPAPVYVAPAPVY 21 (22)
T ss_pred CCEEeccCceeecCCCcc
Confidence 566777888888888764
No 19
>PF10070 DUF2309: Uncharacterized protein conserved in bacteria (DUF2309); InterPro: IPR018752 Members of this family of hypothetical bacterial proteins have no known function.
Probab=49.58 E-value=42 Score=37.32 Aligned_cols=37 Identities=30% Similarity=0.439 Sum_probs=26.9
Q ss_pred hhhchHHHhhhhCCc------eEEEEEEEEccCCeEEEEeccC
Q 019915 278 LLTYPFVREGLVNKT------LALKGGYYDFVNGSFELWGLDF 314 (334)
Q Consensus 278 L~s~P~I~~~v~~g~------L~V~G~vYDi~TG~ve~~~~~~ 314 (334)
|...|-||+.+++.. -..+|+..|.-|-+|++++.+.
T Consensus 541 llNdp~VR~~L~~rGI~IP~dT~Fvaa~H~TttDei~~~d~~~ 583 (788)
T PF10070_consen 541 LLNDPEVREGLAERGIDIPDDTWFVAALHNTTTDEITLFDLDL 583 (788)
T ss_pred HhCCHHHHHHHHHcCCCCCCCCEEEEeeecCccceEEEEcCCC
Confidence 334555666655543 4579999999999999998765
No 20
>COG0279 GmhA Phosphoheptose isomerase [Carbohydrate transport and metabolism]
Probab=39.79 E-value=1.4e+02 Score=27.32 Aligned_cols=65 Identities=23% Similarity=0.321 Sum_probs=46.2
Q ss_pred cEEEEeecCCCCChhhhcC------CCCCcEEE-EeccCCcCCCCCCcccchhHHHHHHHHHhcCcceEEEeccCCCCcc
Q 019915 147 KYMVFACSDSRVCPSHVLD------FQPGEAFV-VRNVANIVPPYDQTKYAGVGAAVEYAVLHLKVSNIVVIGHSACGGI 219 (334)
Q Consensus 147 k~lVItCsDSRV~Pe~ifg------~~pGD~FV-vRNaGN~V~~~d~~~~~~v~ASLEyAV~~L~Vk~IVV~GHS~CGav 219 (334)
...++||.=--...+.+|. -++||+++ +-+-||-- .++.++|-|. .+|+..|...|-++ |.+
T Consensus 82 dsS~lTai~NDy~yd~vFsRqveA~g~~GDvLigISTSGNS~---------nVl~Ai~~Ak-~~gm~vI~ltG~~G-G~~ 150 (176)
T COG0279 82 DSSVLTAIANDYGYDEVFSRQVEALGQPGDVLIGISTSGNSK---------NVLKAIEAAK-EKGMTVIALTGKDG-GKL 150 (176)
T ss_pred ccHHHhhhhccccHHHHHHHHHHhcCCCCCEEEEEeCCCCCH---------HHHHHHHHHH-HcCCEEEEEecCCC-ccc
Confidence 3456677777777788874 36999877 88888853 4788999775 48888888877553 444
Q ss_pred ccc
Q 019915 220 KGL 222 (334)
Q Consensus 220 ~Aa 222 (334)
+..
T Consensus 151 ~~~ 153 (176)
T COG0279 151 AGL 153 (176)
T ss_pred ccc
Confidence 543
No 21
>TIGR02742 TrbC_Ftype type-F conjugative transfer system pilin assembly protein TrbC. This protein is an essential component of the F-type conjugative pilus assembly system for the transfer of plasmid DNA. The N-terminal portion of these proteins are heterogeneous and are not covered by this model.
Probab=36.80 E-value=63 Score=27.95 Aligned_cols=55 Identities=15% Similarity=0.224 Sum_probs=35.8
Q ss_pred cCChhhHHhhhcCCCCcEEEEeecCCCCChhhhcCCCCCcEEEEeccCCcCCCCCCcccchhHHHHHHHHHhcC
Q 019915 131 EKNPALYSELAKGQSPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQTKYAGVGAAVEYAVLHLK 204 (334)
Q Consensus 131 ~~~p~~~~~La~gQ~Pk~lVItCsDSRV~Pe~ifg~~pGD~FVvRNaGN~V~~~d~~~~~~v~ASLEyAV~~L~ 204 (334)
.-||.+|++..-.+-| ++|+.|.+..+..+.. ..+++-.++ .||+ ||+||...+.
T Consensus 58 ~IdP~lF~~f~I~~VP-a~V~~~~~~~c~~~~~--~~~~~~d~v--~Gdv--------------sl~~ALe~ia 112 (130)
T TIGR02742 58 QIDPQWFKQFDITAVP-AFVVVKDGLACLPEQP--CPESDYDVV--YGNV--------------SLKGALEKMA 112 (130)
T ss_pred EEChHHHhhcCceEcC-EEEEECCCCcccccCC--CCCCCeeEE--Eecc--------------cHHHHHHHHH
Confidence 4579999998777778 5788888875554332 355554333 3664 5777776643
No 22
>KOG0025 consensus Zn2+-binding dehydrogenase (nuclear receptor binding factor-1) [Transcription; Energy production and conversion]
Probab=31.60 E-value=68 Score=32.01 Aligned_cols=41 Identities=32% Similarity=0.428 Sum_probs=31.5
Q ss_pred hhhcCCCCCcEEEEeccCCcCCCCCCcccchhHHHHHHHHHhcCcceEEEec
Q 019915 161 SHVLDFQPGEAFVVRNVANIVPPYDQTKYAGVGAAVEYAVLHLKVSNIVVIG 212 (334)
Q Consensus 161 e~ifg~~pGD~FVvRNaGN~V~~~d~~~~~~v~ASLEyAV~~L~Vk~IVV~G 212 (334)
.++-++++|| .||.|.||- +++.++.--+..+|++.|=|+-
T Consensus 153 ~dfv~L~~GD-~vIQNganS----------~VG~~ViQlaka~GiktinvVR 193 (354)
T KOG0025|consen 153 KDFVQLNKGD-SVIQNGANS----------GVGQAVIQLAKALGIKTINVVR 193 (354)
T ss_pred HHHHhcCCCC-eeeecCccc----------HHHHHHHHHHHHhCcceEEEee
Confidence 4567899999 799999995 3554444456889999998764
No 23
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=31.30 E-value=29 Score=30.44 Aligned_cols=14 Identities=43% Similarity=0.828 Sum_probs=12.6
Q ss_pred cceEEEeccCCCCc
Q 019915 205 VSNIVVIGHSACGG 218 (334)
Q Consensus 205 Vk~IVV~GHS~CGa 218 (334)
+.+|.|+||.+||=
T Consensus 3 ~~~I~i~G~~~sGK 16 (188)
T PF00009_consen 3 IRNIAIIGHVDSGK 16 (188)
T ss_dssp EEEEEEEESTTSSH
T ss_pred EEEEEEECCCCCCc
Confidence 57899999999995
No 24
>PF00355 Rieske: Rieske [2Fe-2S] domain; InterPro: IPR017941 There are multiple types of iron-sulphur clusters which are grouped into three main categories based on their atomic content: [2Fe-2S], [3Fe-4S], [4Fe-4S] (see PDOC00176 from PROSITEDOC), and other hybrid or mixed metal types. Two general types of [2Fe-2S] clusters are known and they differ in their coordinating residues. The ferredoxin-type [2Fe-2S] clusters are coordinated to the protein by four cysteine residues (see PDOC00175 from PROSITEDOC). The Rieske-type [2Fe-2S] cluster is coordinated to its protein by two cysteine residues and two histidine residues [, ]. The structure of several Rieske domains has been solved []. It contains three layers of antiparallel beta sheets forming two beta sandwiches. Both beta sandwiches share the central sheet 2. The metal-binding site is at the top of the beta sandwich formed by the sheets 2 and 3. The Fe1 iron of the Rieske cluster is coordinated by two cysteines while the other iron Fe2 is coordinated by two histidines. Two inorganic sulphide ions bridge the two iron ions forming a flat, rhombic cluster. Rieske-type iron-sulphur clusters are common to electron transfer chains of mitochondria and chloroplast and to non-haem iron oxygenase systems: The Rieske protein of the Ubiquinol-cytochrome c reductase (1.10.2.2 from EC) (also known as the bc1 complex or complex III), a complex of the electron transport chains of mitochondria and of some aerobic prokaryotes; it catalyses the oxidoreduction of ubiquinol and cytochrome c. The Rieske protein of chloroplastic plastoquinone-plastocyanin reductase (1.10.99.1 from EC) (also known as the b6f complex). It is functionally similar to the bc1 complex and catalyses the oxidoreduction of plastoquinol and cytochrome f. Bacterial naphthalene 1,2-dioxygenase subunit alpha, a component of the naphthalene dioxygenase (NDO) multicomponent enzyme system which catalyses the incorporation of both atoms of molecular oxygen into naphthalene to form cis-naphthalene dihydrodiol. Bacterial 3-phenylpropionate dioxygenase ferredoxin subunit. Bacterial toluene monoxygenase. Bacterial biphenyl dioxygenase. ; GO: 0016491 oxidoreductase activity, 0051537 2 iron, 2 sulfur cluster binding, 0055114 oxidation-reduction process; PDB: 2XRX_A 2XR8_O 2XSH_G 2XSO_I 2YFI_C 2YFL_A 2YFJ_K 1G8J_D 1G8K_D 1NYK_B ....
Probab=30.76 E-value=18 Score=28.36 Aligned_cols=14 Identities=21% Similarity=0.320 Sum_probs=12.6
Q ss_pred EEEEEEEccCCeEE
Q 019915 295 LKGGYYDFVNGSFE 308 (334)
Q Consensus 295 V~G~vYDi~TG~ve 308 (334)
.|||.||+.||++.
T Consensus 66 ~Hg~~Fd~~tG~~~ 79 (97)
T PF00355_consen 66 CHGWRFDLDTGECV 79 (97)
T ss_dssp TTTEEEETTTSBEE
T ss_pred CcCCEEeCCCceEe
Confidence 79999999999974
No 25
>PF04019 DUF359: Protein of unknown function (DUF359); InterPro: IPR007164 This is family of archaebacterial proteins, which are about 170 amino acids in length. They have no known function. The most conserved portion of the protein contains the sequence GEEDL that may be important for its function.
Probab=30.43 E-value=1.7e+02 Score=25.03 Aligned_cols=77 Identities=16% Similarity=0.110 Sum_probs=58.6
Q ss_pred hhcCCCCcEEEEeecCCCCChhhhcCCCCCcEEEEeccCCcCCCCCCcccchhHHHHHHHHHhcCcceEEEeccCCCCcc
Q 019915 140 LAKGQSPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQTKYAGVGAAVEYAVLHLKVSNIVVIGHSACGGI 219 (334)
Q Consensus 140 La~gQ~Pk~lVItCsDSRV~Pe~ifg~~pGD~FVvRNaGN~V~~~d~~~~~~v~ASLEyAV~~L~Vk~IVV~GHS~CGav 219 (334)
+..|-.|.+.++-+==-|-+...... .....+.++|..+.+.. ++..+|..|+..-+--.|+|-|-.|==++
T Consensus 6 l~~g~~P~laIvD~kTkR~~~~~~~~-~~~~~i~v~NPpG~It~-------el~~ai~~a~~~~~~~~I~V~GEEDL~~l 77 (121)
T PF04019_consen 6 LEAGIIPDLAIVDGKTKREPVVEEVR-KFYRVIEVKNPPGTITE-------ELIEAIKKALESGKPVVIFVDGEEDLAVL 77 (121)
T ss_pred HhCCCCCCEEEEeCcccccCCccccc-CCceEEEEECCCCcccH-------HHHHHHHHHHhCCCCEEEEEeChHHHHHH
Confidence 45688999999988888877655444 55678899999999975 36678889987766678888888876666
Q ss_pred ccccc
Q 019915 220 KGLMS 224 (334)
Q Consensus 220 ~Aal~ 224 (334)
-+.+-
T Consensus 78 Pail~ 82 (121)
T PF04019_consen 78 PAILY 82 (121)
T ss_pred HHHHh
Confidence 55443
No 26
>PRK11440 putative hydrolase; Provisional
Probab=29.06 E-value=1.1e+02 Score=27.19 Aligned_cols=48 Identities=17% Similarity=0.148 Sum_probs=32.3
Q ss_pred cCCCCCcEEEEeccCCcCCCCCCcccchhHHHHHHHHHhcCcceEEEeccCCCCcccc
Q 019915 164 LDFQPGEAFVVRNVANIVPPYDQTKYAGVGAAVEYAVLHLKVSNIVVIGHSACGGIKG 221 (334)
Q Consensus 164 fg~~pGD~FVvRNaGN~V~~~d~~~~~~v~ASLEyAV~~L~Vk~IVV~GHS~CGav~A 221 (334)
+...+||.++.++--+-... + -|+.-....|+++|+|||=+-..-|.+
T Consensus 90 l~~~~~d~vi~K~~~saF~~--------T--~L~~~L~~~gi~~lii~Gv~T~~CV~~ 137 (188)
T PRK11440 90 LGKTDSDIEVTKRQWGAFYG--------T--DLELQLRRRGIDTIVLCGISTNIGVES 137 (188)
T ss_pred cCCCCCCEEEecCCcCCCCC--------C--CHHHHHHHCCCCEEEEeeechhHHHHH
Confidence 45678898877776554432 2 255556789999999999665554443
No 27
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=27.45 E-value=39 Score=29.65 Aligned_cols=14 Identities=36% Similarity=0.650 Sum_probs=12.6
Q ss_pred cceEEEeccCCCCc
Q 019915 205 VSNIVVIGHSACGG 218 (334)
Q Consensus 205 Vk~IVV~GHS~CGa 218 (334)
+++|+++||++||=
T Consensus 2 ~r~i~ivG~~~~GK 15 (194)
T cd01891 2 IRNIAIIAHVDHGK 15 (194)
T ss_pred ccEEEEEecCCCCH
Confidence 67999999999994
No 28
>PRK11181 23S rRNA (guanosine-2'-O-)-methyltransferase; Provisional
Probab=27.14 E-value=2.7e+02 Score=26.15 Aligned_cols=75 Identities=16% Similarity=0.154 Sum_probs=41.1
Q ss_pred ChhhHHhhhcCCCCcEEEEeecCCCC----ChhhhcCCC-CCcEEEEeccCCcCCCCCCcccchhHHHHHHHHHhcCcce
Q 019915 133 NPALYSELAKGQSPKYMVFACSDSRV----CPSHVLDFQ-PGEAFVVRNVANIVPPYDQTKYAGVGAAVEYAVLHLKVSN 207 (334)
Q Consensus 133 ~p~~~~~La~gQ~Pk~lVItCsDSRV----~Pe~ifg~~-pGD~FVvRNaGN~V~~~d~~~~~~v~ASLEyAV~~L~Vk~ 207 (334)
.++.+++++.+++|.=++.-|...+. +.+.++... .+-++++=++-+ | ..++ +|-=....+|++.
T Consensus 54 ~~~~l~~ls~~~~~qGv~a~~~~~~~~~~~~~~~~~~~~~~~~~lvLd~v~d---p------~NlG-ai~Rta~a~G~~~ 123 (244)
T PRK11181 54 NRQTLDEKAEGAVHQGIIARVKPGRQLQENDLPDLLASLEQPFLLILDGVTD---P------HNLG-ACLRSADAAGVHA 123 (244)
T ss_pred CHHHHhhhhcCCCCceEEEEEecccccchhhHHHHHhcCCCCEEEEEcCCCC---c------chHH-HHHHHHHHcCCCE
Confidence 35667788877777655555554332 223333322 222333322211 1 1233 4555677899999
Q ss_pred EEEeccCCCC
Q 019915 208 IVVIGHSACG 217 (334)
Q Consensus 208 IVV~GHS~CG 217 (334)
|++.+|+.+.
T Consensus 124 vi~~~~~~~~ 133 (244)
T PRK11181 124 VIVPKDRSAQ 133 (244)
T ss_pred EEECCCCCCC
Confidence 9998887554
No 29
>cd03531 Rieske_RO_Alpha_KSH The alignment model represents the N-terminal rieske iron-sulfur domain of KshA, the oxygenase component of 3-ketosteroid 9-alpha-hydroxylase (KSH). The terminal oxygenase component of KSH is a key enzyme in the microbial steroid degradation pathway, catalyzing the 9 alpha-hydroxylation of 4-androstene-3,17-dione (AD) and 1,4-androstadiene-3,17-dione (ADD). KSH is a two-component class IA monooxygenase, with terminal oxygenase (KshA) and oxygenase reductase (KshB) components. KSH activity has been found in many actino- and proteo- bacterial genera including Rhodococcus, Nocardia, Arthrobacter, Mycobacterium, and Burkholderia.
Probab=27.11 E-value=27 Score=28.90 Aligned_cols=17 Identities=6% Similarity=0.008 Sum_probs=14.0
Q ss_pred EEEEEEEccCCeEEEEec
Q 019915 295 LKGGYYDFVNGSFELWGL 312 (334)
Q Consensus 295 V~G~vYDi~TG~ve~~~~ 312 (334)
.|||-||+ ||++..+..
T Consensus 64 ~Hg~~fd~-~G~~~~~p~ 80 (115)
T cd03531 64 FHDWRWGG-DGRCKAIPY 80 (115)
T ss_pred CCCCEECC-CCCEEECCc
Confidence 79999999 999766543
No 30
>PRK14430 acylphosphatase; Provisional
Probab=25.67 E-value=48 Score=26.72 Aligned_cols=20 Identities=25% Similarity=0.360 Sum_probs=16.7
Q ss_pred ceEEEEEEEEccCCeEEEEe
Q 019915 292 TLALKGGYYDFVNGSFELWG 311 (334)
Q Consensus 292 ~L~V~G~vYDi~TG~ve~~~ 311 (334)
++.|.||+.+..+|+|+..-
T Consensus 29 ~lgl~G~VrN~~dGsVei~~ 48 (92)
T PRK14430 29 DLGLGGWVRNRADGTVEVMA 48 (92)
T ss_pred HhCCEEEEEECCCCcEEEEE
Confidence 45699999999999987653
No 31
>cd03528 Rieske_RO_ferredoxin Rieske non-heme iron oxygenase (RO) family, Rieske ferredoxin component; composed of the Rieske ferredoxin component of some three-component RO systems including biphenyl dioxygenase (BPDO) and carbazole 1,9a-dioxygenase (CARDO). The RO family comprise a large class of aromatic ring-hydroxylating dioxygenases found predominantly in microorganisms. These enzymes enable microorganisms to tolerate and even exclusively utilize aromatic compounds for growth. ROs consist of two or three components: reductase, oxygenase, and ferredoxin (in some cases) components. The ferredoxin component contains either a plant-type or Rieske-type [2Fe-2S] cluster. The Rieske ferredoxin component in this family carries an electron from the RO reductase component to the terminal RO oxygenase component. BPDO degrades biphenyls and polychlorinated biphenyls. BPDO ferredoxin (BphF) has structural features consistent with a minimal and perhaps archetypical Rieske protein in that the in
Probab=25.05 E-value=28 Score=27.31 Aligned_cols=14 Identities=36% Similarity=0.665 Sum_probs=12.6
Q ss_pred EEEEEEEccCCeEE
Q 019915 295 LKGGYYDFVNGSFE 308 (334)
Q Consensus 295 V~G~vYDi~TG~ve 308 (334)
.|||.||+.||+..
T Consensus 62 ~Hg~~fd~~~G~~~ 75 (98)
T cd03528 62 LHGGRFDLRTGKAL 75 (98)
T ss_pred CcCCEEECCCCccc
Confidence 89999999999863
No 32
>PRK09778 putative antitoxin of the YafO-YafN toxin-antitoxin system; Provisional
Probab=25.01 E-value=93 Score=25.80 Aligned_cols=74 Identities=22% Similarity=0.207 Sum_probs=37.1
Q ss_pred cccccccccccccCC--CCceEEEeecCCCCCCCcccCCccccCCCcccCcchhhHhhhhhHHHHHHHHHHHhhhhcCcc
Q 019915 12 TSVSQAQSSLIKSST--LRPSIVARLNSPASPPSLIRNEPVFAAPAPIINPNWREDMANQSYEEAIEALKKLLKEKEDLK 89 (334)
Q Consensus 12 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 89 (334)
+..+.+-|-+||.+. ++.-- .--|=+|+|.|- .+.|.+-|.|... .|+. .|.++.+++..
T Consensus 6 A~~taSISELKKNP~~~~~g~P---------VAILNhN~PafY----~Vpa~~yE~m~e~-LeD~--eL~~l~~~R~~-- 67 (97)
T PRK09778 6 AEKSVNITELRKNPAKYFIDQP---------VAVLSNNRPAGY----LLSASAFEALMDM-LAEQ--EEKKPIKARFR-- 67 (97)
T ss_pred hhhhccHHHHhhCHHHHhcCCc---------eEEecCCceeEE----EeCHHHHHHHHHH-HHhH--HHHHHHHHHcC--
Confidence 334455577888544 32222 233458999886 3445444555432 1111 24455555544
Q ss_pred hhHhhhhHHHHHhhc
Q 019915 90 PVAAAKVEQITAQLQ 104 (334)
Q Consensus 90 ~~a~~~i~~~t~~l~ 104 (334)
-.++.++.++++-+
T Consensus 68 -~~~~~~~~i~~~~~ 81 (97)
T PRK09778 68 -PSAARLEEITRRAE 81 (97)
T ss_pred -ccHHHHHHHHHHHH
Confidence 23455666555443
No 33
>PRK14432 acylphosphatase; Provisional
Probab=24.89 E-value=52 Score=26.60 Aligned_cols=21 Identities=24% Similarity=0.403 Sum_probs=17.5
Q ss_pred ceEEEEEEEEccCCeEEEEec
Q 019915 292 TLALKGGYYDFVNGSFELWGL 312 (334)
Q Consensus 292 ~L~V~G~vYDi~TG~ve~~~~ 312 (334)
++.|.||+.+..+|+|+.+-.
T Consensus 27 ~lgl~G~V~N~~dG~Vei~~~ 47 (93)
T PRK14432 27 NMKLKGFVKNLNDGRVEIVAF 47 (93)
T ss_pred HhCCEEEEEECCCCCEEEEEE
Confidence 466999999999999987643
No 34
>PF00561 Abhydrolase_1: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases.; InterPro: IPR000073 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents fold-1 of alpha/beta hydrolase.; PDB: 2VAT_E 2VAX_C 2VAV_H 2PSJ_A 2PSH_B 2PSE_A 2PSF_A 2PSD_A 2EDA_A 1CIJ_A ....
Probab=24.52 E-value=68 Score=27.49 Aligned_cols=30 Identities=30% Similarity=0.467 Sum_probs=25.1
Q ss_pred chhHHHHHHHHHhcCcceEEEeccCCCCccc
Q 019915 190 AGVGAAVEYAVLHLKVSNIVVIGHSACGGIK 220 (334)
Q Consensus 190 ~~v~ASLEyAV~~L~Vk~IVV~GHS~CGav~ 220 (334)
....+.+++-...||++.|.++|||- ||.-
T Consensus 28 ~~~~~~~~~~~~~l~~~~~~~vG~S~-Gg~~ 57 (230)
T PF00561_consen 28 DDLAADLEALREALGIKKINLVGHSM-GGML 57 (230)
T ss_dssp HHHHHHHHHHHHHHTTSSEEEEEETH-HHHH
T ss_pred HHHHHHHHHHHHHhCCCCeEEEEECC-ChHH
Confidence 45668899999999999999999998 5544
No 35
>PF08822 DUF1804: Protein of unknown function (DUF1804); InterPro: IPR014926 This entry is represented by Bacteriophage D3112, Orf24. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=24.35 E-value=1.7e+02 Score=26.42 Aligned_cols=56 Identities=25% Similarity=0.296 Sum_probs=33.2
Q ss_pred hhhHHHHHHHHHHHhhhhcCcchhHhhhhHHHHHhhcCCCCCChHHHHHHHHHHHHHH
Q 019915 68 NQSYEEAIEALKKLLKEKEDLKPVAAAKVEQITAQLQTPSDTKAFDSVERIKEGFIHF 125 (334)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~l~~~a~~~i~~~t~~l~~~~~~~p~~~l~~Ll~GN~rF 125 (334)
.+||..+++.-|+++=|..+|. +|...++.+.+-+++.. +.-...+-++++.|...
T Consensus 105 aDsf~K~vaaskr~lPets~La-vA~~vl~~l~~fv~e~~-P~h~~af~eiLepFg~~ 160 (165)
T PF08822_consen 105 ADSFSKMVAASKRVLPETSELA-VAMEVLELLAAFVQERY-PQHLAAFLEILEPFGEE 160 (165)
T ss_pred HHHHHHHHHHHhhcCchHHHHH-HHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHH
Confidence 4666677777777776666666 46666666666665543 23334555566555443
No 36
>cd04321 ScAspRS_mt_like_N ScAspRS_mt_like_N: N-terminal, anticodon recognition domain of the type found in Saccharomyces cerevisiae mitochondrial (mt) aspartyl-tRNA synthetase (AspRS). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. The enzymes in this fungal group are homodimeric class2b aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic protein synthesis, whereas the other exclusively with mitochondrial protein synthesis. Mutations in the gene for
Probab=24.27 E-value=97 Score=24.09 Aligned_cols=26 Identities=12% Similarity=-0.023 Sum_probs=20.9
Q ss_pred ceEEEEEEEEccC--CeEEEEeccCCCC
Q 019915 292 TLALKGGYYDFVN--GSFELWGLDFSLS 317 (334)
Q Consensus 292 ~L~V~G~vYDi~T--G~ve~~~~~~~~~ 317 (334)
++.|+||++.+.. |++-|+++..+.+
T Consensus 1 ~V~v~Gwv~~~R~~~~~~~Fi~LrD~~g 28 (86)
T cd04321 1 KVTLNGWIDRKPRIVKKLSFADLRDPNG 28 (86)
T ss_pred CEEEEEeEeeEeCCCCceEEEEEECCCC
Confidence 3679999999997 6888888866554
No 37
>PF14618 DUF4452: Domain of unknown function (DUF4452)
Probab=24.25 E-value=57 Score=29.48 Aligned_cols=62 Identities=26% Similarity=0.307 Sum_probs=32.4
Q ss_pred ccceeecccccccccccccCCCCceEEEeecCC-CCCCCc------ccCCccc---cCCCcccCcchhhHhh
Q 019915 6 INNWCLTSVSQAQSSLIKSSTLRPSIVARLNSP-ASPPSL------IRNEPVF---AAPAPIINPNWREDMA 67 (334)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~------~~~~~~~---~~~~~~~~~~~~~~~~ 67 (334)
-|...++|.||.++...--.+..|.+.-.-.++ ..+|.. ---+|.- --+.|||+|.-++.|+
T Consensus 77 s~rsSlsS~SP~~SP~q~~~~~~~~~sl~~~s~~~~~p~~~~~~~~klhqpsa~R~RnaIpIVNP~Tgm~vs 148 (165)
T PF14618_consen 77 SNRSSLSSNSPSSSPTQHQIQPTPSFSLSSASPPFQPPRYTQQNNLKLHQPSAPRTRNAIPIVNPSTGMRVS 148 (165)
T ss_pred cCccccccCCCCCCccccccccCCCcccCCCCCCcCCCcccccccccccCCccccccCccceeCCCCCCccC
Confidence 445788888998777663233334333222211 112332 1122211 2368999999777665
No 38
>cd03548 Rieske_RO_Alpha_OMO_CARDO Rieske non-heme iron oxygenase (RO) family, 2-Oxoquinoline 8-monooxygenase (OMO) and Carbazole 1,9a-dioxygenase (CARDO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. OMO catalyzes the NADH-dependent oxidation of the N-heterocyclic aromatic compound 2-oxoquinoline to 8-hydroxy-2-oxoquinoline, the second step in the bacterial degradation of quinoline. OMO consists of a reductase component (OMR) and an oxygenase component (OMO) that together function to shuttle electrons from the
Probab=23.71 E-value=50 Score=28.12 Aligned_cols=16 Identities=19% Similarity=0.289 Sum_probs=14.3
Q ss_pred EEEEEEEccCCeEEEE
Q 019915 295 LKGGYYDFVNGSFELW 310 (334)
Q Consensus 295 V~G~vYDi~TG~ve~~ 310 (334)
.|||-||+.||++..+
T Consensus 78 ~Hgw~Fdl~tG~~~~~ 93 (136)
T cd03548 78 YHGWTYRLDDGKLVTI 93 (136)
T ss_pred CCccEEeCCCccEEEc
Confidence 7999999999998654
No 39
>cd03478 Rieske_AIFL_N AIFL (apoptosis-inducing factor like) family, N-terminal Rieske domain; members of this family show similarity to human AIFL, containing an N-terminal Rieske domain and a C-terminal pyridine nucleotide-disulfide oxidoreductase domain (Pyr_redox). The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. AIFL shares 35% homology with human AIF (apoptosis-inducing factor), mainly in the Pyr_redox domain. AIFL is predominantly localized to the mitochondria. AIFL induces apoptosis in a caspase-dependent manner.
Probab=23.60 E-value=27 Score=27.49 Aligned_cols=14 Identities=21% Similarity=0.620 Sum_probs=12.5
Q ss_pred EEEEEEEccCCeEE
Q 019915 295 LKGGYYDFVNGSFE 308 (334)
Q Consensus 295 V~G~vYDi~TG~ve 308 (334)
.|||.||+.||++.
T Consensus 61 ~Hg~~Fdl~tG~~~ 74 (95)
T cd03478 61 WHGACFNLRTGDIE 74 (95)
T ss_pred CCCCEEECCCCcCc
Confidence 79999999999863
No 40
>PRK14440 acylphosphatase; Provisional
Probab=23.18 E-value=62 Score=25.95 Aligned_cols=20 Identities=30% Similarity=0.424 Sum_probs=16.9
Q ss_pred ceEEEEEEEEccCCeEEEEe
Q 019915 292 TLALKGGYYDFVNGSFELWG 311 (334)
Q Consensus 292 ~L~V~G~vYDi~TG~ve~~~ 311 (334)
++.|.||+.+..+|+|+.+-
T Consensus 28 ~~gl~G~V~N~~dG~Vei~~ 47 (90)
T PRK14440 28 RLGIKGYAKNLPDGSVEVVA 47 (90)
T ss_pred HcCCEEEEEECCCCCEEEEE
Confidence 46699999999999988654
No 41
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=23.09 E-value=47 Score=28.18 Aligned_cols=13 Identities=31% Similarity=0.496 Sum_probs=11.5
Q ss_pred ceEEEeccCCCCc
Q 019915 206 SNIVVIGHSACGG 218 (334)
Q Consensus 206 k~IVV~GHS~CGa 218 (334)
++|+++||++||=
T Consensus 1 rni~~vG~~~~GK 13 (179)
T cd01890 1 RNFSIIAHIDHGK 13 (179)
T ss_pred CcEEEEeecCCCH
Confidence 4799999999994
No 42
>PRK14423 acylphosphatase; Provisional
Probab=22.89 E-value=72 Score=25.60 Aligned_cols=20 Identities=20% Similarity=0.185 Sum_probs=17.1
Q ss_pred ceEEEEEEEEccCCeEEEEe
Q 019915 292 TLALKGGYYDFVNGSFELWG 311 (334)
Q Consensus 292 ~L~V~G~vYDi~TG~ve~~~ 311 (334)
++.|.||+.+..+|+|+.+-
T Consensus 30 ~lgl~G~V~N~~dG~Vei~~ 49 (92)
T PRK14423 30 ELGVDGWVRNLDDGRVEAVF 49 (92)
T ss_pred HcCCEEEEEECCCCeEEEEE
Confidence 56799999999999988653
No 43
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=22.84 E-value=1.1e+02 Score=25.79 Aligned_cols=39 Identities=28% Similarity=0.405 Sum_probs=24.6
Q ss_pred cCCCCCcEEE-EeccCCcCCCCCCcccchhHHHHHHHHHhcCcceEEEec
Q 019915 164 LDFQPGEAFV-VRNVANIVPPYDQTKYAGVGAAVEYAVLHLKVSNIVVIG 212 (334)
Q Consensus 164 fg~~pGD~FV-vRNaGN~V~~~d~~~~~~v~ASLEyAV~~L~Vk~IVV~G 212 (334)
.+.+|||+++ +-+-||-- .+..++++| ...|.+.|.+.|
T Consensus 99 ~~~~~gDvli~iS~SG~s~---------~vi~a~~~A-k~~G~~vIalTg 138 (138)
T PF13580_consen 99 YDIRPGDVLIVISNSGNSP---------NVIEAAEEA-KERGMKVIALTG 138 (138)
T ss_dssp TT--TT-EEEEEESSS-SH---------HHHHHHHHH-HHTT-EEEEEEE
T ss_pred cCCCCCCEEEEECCCCCCH---------HHHHHHHHH-HHCCCEEEEEeC
Confidence 4589999766 66667752 367788888 678999988865
No 44
>PF05952 ComX: Bacillus competence pheromone ComX; InterPro: IPR009233 Competence is the ability of a cell to take up exogenous DNA from its environment, resulting in transformation. It is widespread among bacteria and is probably an important mechanism for the horizontal transfer of genes. Cells that take up DNA inevitably acquire the nucleotides the DNA consists of, and, because nucleotides are needed for DNA and RNA synthesis and are expensive to synthesise, these may make a significant contribution to the cell's energy budget []. The lateral gene transfer caused by competence also contributes to the genetic diversity that makes evolution possible. DNA usually becomes available by the death and lysis of other cells. Competent bacteria use components of extracellular filaments called type 4 pili to create pores in their membranes and pull DNA through the pores into the cytoplasm. This process, including the development of competence and the expression of the uptake machinery, is regulated in response to cell-cell signalling and/or nutritional conditions []. Natural genetic competence in Bacillus subtilis is controlled by quorum-sensing (QS). The ComP- ComA two-component system detects the signalling molecule ComX, and this signal is transduced by a conserved phosphotransfer mechanism. ComX is synthesised as an inactive precursor and is then cleaved and modified by ComQ before export to the extracellular environment [].
Probab=22.55 E-value=82 Score=23.66 Aligned_cols=25 Identities=28% Similarity=0.247 Sum_probs=21.6
Q ss_pred HHHHhhhchHHHhhhhCCceEEEEE
Q 019915 274 SLSNLLTYPFVREGLVNKTLALKGG 298 (334)
Q Consensus 274 qv~~L~s~P~I~~~v~~g~L~V~G~ 298 (334)
-|..|..+|-+-+.+++|+..+.|.
T Consensus 5 iV~YLv~nPevl~kl~~g~asLIGv 29 (57)
T PF05952_consen 5 IVNYLVQNPEVLEKLKEGEASLIGV 29 (57)
T ss_pred HHHHHHHChHHHHHHHcCCeeEecC
Confidence 3667889999999999999998875
No 45
>PRK14445 acylphosphatase; Provisional
Probab=22.13 E-value=70 Score=25.57 Aligned_cols=21 Identities=24% Similarity=0.365 Sum_probs=17.2
Q ss_pred CceEEEEEEEEccCCeEEEEe
Q 019915 291 KTLALKGGYYDFVNGSFELWG 311 (334)
Q Consensus 291 g~L~V~G~vYDi~TG~ve~~~ 311 (334)
.++.|.||+.+..+|+|+..-
T Consensus 28 ~~~gl~G~V~N~~dG~Vei~~ 48 (91)
T PRK14445 28 SELNLSGWVRNLPDGTVEIEA 48 (91)
T ss_pred hhCCCEEEEEECCCCeEEEEE
Confidence 356699999999999987643
No 46
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=20.76 E-value=59 Score=31.25 Aligned_cols=15 Identities=27% Similarity=0.585 Sum_probs=12.5
Q ss_pred cceEEEeccCCCCcc
Q 019915 205 VSNIVVIGHSACGGI 219 (334)
Q Consensus 205 Vk~IVV~GHS~CGav 219 (334)
-+-|.|+|||+||=-
T Consensus 29 GEfvsilGpSGcGKS 43 (248)
T COG1116 29 GEFVAILGPSGCGKS 43 (248)
T ss_pred CCEEEEECCCCCCHH
Confidence 467899999999953
No 47
>PRK14429 acylphosphatase; Provisional
Probab=20.40 E-value=81 Score=25.15 Aligned_cols=19 Identities=26% Similarity=0.403 Sum_probs=16.3
Q ss_pred ceEEEEEEEEccCCeEEEE
Q 019915 292 TLALKGGYYDFVNGSFELW 310 (334)
Q Consensus 292 ~L~V~G~vYDi~TG~ve~~ 310 (334)
++.|.||+.+..+|+|+.+
T Consensus 27 ~~gl~G~V~N~~dG~Vei~ 45 (90)
T PRK14429 27 ALGVTGYVTNCEDGSVEIL 45 (90)
T ss_pred HhCCEEEEEECCCCeEEEE
Confidence 4569999999999998764
No 48
>TIGR02377 MocE_fam_FeS Rieske [2Fe-2S] domain protein, MocE subfamily. This model describes a subfamily of the Rieske-like [2Fe-2S] family of ferredoxins that includes MocE, part of the rhizopine (3-O-methyl-scyllo-inosamine) catabolic cluster in Rhizobium. Members of this family are related to, yet distinct from, the small subunit of nitrite reductase [NAD(P)H].
Probab=20.24 E-value=42 Score=26.96 Aligned_cols=13 Identities=23% Similarity=0.590 Sum_probs=12.2
Q ss_pred EEEEEEEccCCeE
Q 019915 295 LKGGYYDFVNGSF 307 (334)
Q Consensus 295 V~G~vYDi~TG~v 307 (334)
.|||.||+.||+.
T Consensus 64 ~Hg~~Fdl~tG~~ 76 (101)
T TIGR02377 64 KHAGCFDYRTGEA 76 (101)
T ss_pred ccCCEEECCCCcc
Confidence 8999999999986
No 49
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=20.12 E-value=57 Score=27.24 Aligned_cols=13 Identities=15% Similarity=0.565 Sum_probs=11.1
Q ss_pred eEEEeccCCCCcc
Q 019915 207 NIVVIGHSACGGI 219 (334)
Q Consensus 207 ~IVV~GHS~CGav 219 (334)
+|+|+||.+||=.
T Consensus 1 ~i~~vG~~~~GKs 13 (167)
T cd04160 1 SVLILGLDNAGKT 13 (167)
T ss_pred CEEEEecCCCCHH
Confidence 4899999999953
Done!