BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019916
(334 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3G4D|A Chain A, Crystal Structure Of (+)-Delta-Cadinene Synthase From
Gossypium Arboreum And Evolutionary Divergence Of Metal
Binding Motifs For Catalysis
pdb|3G4D|B Chain B, Crystal Structure Of (+)-Delta-Cadinene Synthase From
Gossypium Arboreum And Evolutionary Divergence Of Metal
Binding Motifs For Catalysis
pdb|3G4F|A Chain A, Crystal Structure Of (+)- -Cadinene Synthase From
Gossypium Arboreum In Complex With 2-Fluorofarnesyl
Diphosphate
pdb|3G4F|B Chain B, Crystal Structure Of (+)- -Cadinene Synthase From
Gossypium Arboreum In Complex With 2-Fluorofarnesyl
Diphosphate
Length = 554
Score = 295 bits (754), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 144/322 (44%), Positives = 208/322 (64%), Gaps = 10/322 (3%)
Query: 14 SSTEETVRPIADFHPTLWGTHFLKSAADVETIDDATQEQHAALKQEVRRMITTTANKLAH 73
SS ++ +RP ADF P++WG FL + ID T+++H LK+EVR+MI
Sbjct: 15 SSNKDEMRPKADFQPSIWGDLFLNCPD--KNIDAETEKRHQQLKEEVRKMIVAPMANSTQ 72
Query: 74 KLHMIDSVQRLGVAYHFEKEIEDELGKVSHDLD--RDDLYVVSLRFRLFRQQGVKISCXX 131
KL IDSVQRLGV+YHF KEIEDEL + H+ + +DLY S+RFRL R+ G +SC
Sbjct: 73 KLAFIDSVQRLGVSYHFTKEIEDELENIYHNNNDAENDLYTTSIRFRLLREHGYNVSCDV 132
Query: 132 XXXXXXXXXXXXXSLINDIRGMFSLHEAAYLAVRGEDILDEAIAFTTSHLKSIISISDHS 191
S+ +D+RG+ L++A+YL V GEDILDEAI+FTT HL ++ DH
Sbjct: 133 FNKFKDEQGNFKSSVTSDVRGLLELYQASYLRVHGEDILDEAISFTTHHLSLAVASLDHP 192
Query: 192 HVNSKLPEQIRRSLQIPLRKAAARLEARYFLDIYSRDDLHDETLLKFAKLDFNILQAAHQ 251
L E++ +L+ +R+ R+EAR++L +Y + H++ LL+FAK+DFN+LQ H+
Sbjct: 193 -----LSEEVSHALKQSIRRGLPRVEARHYLSVYQDIESHNKALLEFAKIDFNMLQFLHR 247
Query: 252 KEASIMTRWWNDLGFPKKVPYARDRIVETYIWMLLGVSYDPNLAFGRIFASKVMCMLTII 311
KE S + RWW DL F +K+PYARDR+VE Y W + GV ++P + GR +KV+ M +I+
Sbjct: 248 KELSEICRWWKDLDFQRKLPYARDRVVEGYFW-ISGVYFEPQYSLGRKMLTKVIAMASIV 306
Query: 312 DDTFDAYGTFEQLTHFTEAVTR 333
DDT+D+Y T+E+L +T A+ R
Sbjct: 307 DDTYDSYATYEELIPYTNAIER 328
>pdb|5EAU|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum
Length = 548
Score = 266 bits (679), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 137/330 (41%), Positives = 210/330 (63%), Gaps = 17/330 (5%)
Query: 10 AAVSSSTEETVRPIADFHPTLWGTHFLKSAADVETIDDATQEQHA----ALKQEVRRMIT 65
AAV++ EE VRP+ADF P+LWG FL +ID+ E++A ALK++ R M+
Sbjct: 4 AAVANYEEEIVRPVADFSPSLWGDQFLSF-----SIDNQVAEKYAKEIEALKEQTRNMLL 58
Query: 66 TTANKLAHKLHMIDSVQRLGVAYHFEKEIEDELGKV-SHDLDRDDLYVVSLRFRLFRQQG 124
T KLA L++ID+++RLG++YHFEKEI+D L ++ + + + +DL +L+FRL RQ G
Sbjct: 59 ATGMKLADTLNLIDTIERLGISYHFEKEIDDILDQIYNQNSNCNDLCTSALQFRLLRQHG 118
Query: 125 VKISCXXXXXXXXXXXXXXXSLINDIRGMFSLHEAAYLAVRGEDILDEAIAFTTSHLKSI 184
IS SL +D+ G+ +L+EA+++ +DIL++A+AF+T HL+S
Sbjct: 119 FNISPEIFSKFQDENGKFKESLASDVLGLLNLYEASHVRTHADDILEDALAFSTIHLESA 178
Query: 185 ISISDHSHVNSKLPEQIRRSLQIPLRKAAARLEARYFLD-IYSRDDLHDETLLKFAKLDF 243
H+ S L EQ+ +L+ L K R+E R+F+ IY ++ + LL+FAKLDF
Sbjct: 179 AP-----HLKSPLREQVTHALEQCLHKGVPRVETRFFISSIYDKEQSKNNVLLRFAKLDF 233
Query: 244 NILQAAHQKEASIMTRWWNDLGFPKKVPYARDRIVETYIWMLLGVSYDPNLAFGRIFASK 303
N+LQ H++E + ++RWW DL F +PYARDR+VE Y W LGV ++P + R+ K
Sbjct: 234 NLLQMLHKQELAQVSRWWKDLDFVTTLPYARDRVVECYFWA-LGVYFEPQYSQARVMLVK 292
Query: 304 VMCMLTIIDDTFDAYGTFEQLTHFTEAVTR 333
+ M++I+DDTFDAYGT ++L +T+A+ R
Sbjct: 293 TISMISIVDDTFDAYGTVKELEAYTDAIQR 322
>pdb|1HXC|A Chain A, Crystal Structure Of Teas C440w
Length = 548
Score = 266 bits (679), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 137/330 (41%), Positives = 210/330 (63%), Gaps = 17/330 (5%)
Query: 10 AAVSSSTEETVRPIADFHPTLWGTHFLKSAADVETIDDATQEQHA----ALKQEVRRMIT 65
AAV++ EE VRP+ADF P+LWG FL +ID+ E++A ALK++ R M+
Sbjct: 4 AAVANYEEEIVRPVADFSPSLWGDQFLSF-----SIDNQVAEKYAKEIEALKEQTRNMLL 58
Query: 66 TTANKLAHKLHMIDSVQRLGVAYHFEKEIEDELGKV-SHDLDRDDLYVVSLRFRLFRQQG 124
T KLA L++ID+++RLG++YHFEKEI+D L ++ + + + +DL +L+FRL RQ G
Sbjct: 59 ATGMKLADTLNLIDTIERLGISYHFEKEIDDILDQIYNQNSNCNDLCTSALQFRLLRQHG 118
Query: 125 VKISCXXXXXXXXXXXXXXXSLINDIRGMFSLHEAAYLAVRGEDILDEAIAFTTSHLKSI 184
IS SL +D+ G+ +L+EA+++ +DIL++A+AF+T HL+S
Sbjct: 119 FNISPEIFSKFQDENGKFKESLASDVLGLLNLYEASHVRTHADDILEDALAFSTIHLESA 178
Query: 185 ISISDHSHVNSKLPEQIRRSLQIPLRKAAARLEARYFLD-IYSRDDLHDETLLKFAKLDF 243
H+ S L EQ+ +L+ L K R+E R+F+ IY ++ + LL+FAKLDF
Sbjct: 179 AP-----HLKSPLREQVTHALEQCLHKGVPRVETRFFISSIYDKEQSKNNVLLRFAKLDF 233
Query: 244 NILQAAHQKEASIMTRWWNDLGFPKKVPYARDRIVETYIWMLLGVSYDPNLAFGRIFASK 303
N+LQ H++E + ++RWW DL F +PYARDR+VE Y W LGV ++P + R+ K
Sbjct: 234 NLLQMLHKQELAQVSRWWKDLDFVTTLPYARDRVVECYFWA-LGVYFEPQYSQARVMLVK 292
Query: 304 VMCMLTIIDDTFDAYGTFEQLTHFTEAVTR 333
+ M++I+DDTFDAYGT ++L +T+A+ R
Sbjct: 293 TISMISIVDDTFDAYGTVKELEAYTDAIQR 322
>pdb|5EAS|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum
Length = 548
Score = 265 bits (676), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 135/326 (41%), Positives = 207/326 (63%), Gaps = 9/326 (2%)
Query: 10 AAVSSSTEETVRPIADFHPTLWGTHFLKSAADVETIDDATQEQHAALKQEVRRMITTTAN 69
AAV++ EE VRP+ADF P+LWG FL + D + + QE A LK++ R M+ T
Sbjct: 4 AAVANYEEEIVRPVADFSPSLWGDQFLSFSIDNQVAEKYAQEIEA-LKEQTRSMLLATGR 62
Query: 70 KLAHKLHMIDSVQRLGVAYHFEKEIEDELGKV-SHDLDRDDLYVVSLRFRLFRQQGVKIS 128
KLA L++ID ++RLG++YHFEKEI++ L ++ + + + +DL +L+FRL RQ G IS
Sbjct: 63 KLADTLNLIDIIERLGISYHFEKEIDEILDQIYNQNSNCNDLCTSALQFRLLRQHGFNIS 122
Query: 129 CXXXXXXXXXXXXXXXSLINDIRGMFSLHEAAYLAVRGEDILDEAIAFTTSHLKSIISIS 188
SL +D+ G+ +L+EA+++ +DIL++A+AF+T HL+S
Sbjct: 123 PEIFSKFQDENGKFKESLASDVLGLLNLYEASHVRTHADDILEDALAFSTIHLESAAP-- 180
Query: 189 DHSHVNSKLPEQIRRSLQIPLRKAAARLEARYFLD-IYSRDDLHDETLLKFAKLDFNILQ 247
H+ S L EQ+ +L+ L K R+E R+F+ IY ++ + LL+FAKLDFN+LQ
Sbjct: 181 ---HLKSPLREQVTHALEQCLHKGVPRVETRFFISSIYDKEQSKNNVLLRFAKLDFNLLQ 237
Query: 248 AAHQKEASIMTRWWNDLGFPKKVPYARDRIVETYIWMLLGVSYDPNLAFGRIFASKVMCM 307
H++E + ++RWW DL F +PYARDR+VE Y W LGV ++P + R+ K + M
Sbjct: 238 MLHKQELAQVSRWWKDLDFVTTLPYARDRVVECYFWA-LGVYFEPQYSQARVMLVKTISM 296
Query: 308 LTIIDDTFDAYGTFEQLTHFTEAVTR 333
++I+DDTFDAYGT ++L +T+A+ R
Sbjct: 297 ISIVDDTFDAYGTVKELEAYTDAIQR 322
>pdb|5EAT|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum With
Substrate Analog Farnesyl Hydroxyphosphonate
Length = 548
Score = 265 bits (676), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 135/326 (41%), Positives = 207/326 (63%), Gaps = 9/326 (2%)
Query: 10 AAVSSSTEETVRPIADFHPTLWGTHFLKSAADVETIDDATQEQHAALKQEVRRMITTTAN 69
AAV++ EE VRP+ADF P+LWG FL + D + + QE A LK++ R M+ T
Sbjct: 4 AAVANYEEEIVRPVADFSPSLWGDQFLSFSIDNQVAEKYAQEIEA-LKEQTRSMLLATGR 62
Query: 70 KLAHKLHMIDSVQRLGVAYHFEKEIEDELGKV-SHDLDRDDLYVVSLRFRLFRQQGVKIS 128
KLA L++ID ++RLG++YHFEKEI++ L ++ + + + +DL +L+FRL RQ G IS
Sbjct: 63 KLADTLNLIDIIERLGISYHFEKEIDEILDQIYNQNSNCNDLCTSALQFRLLRQHGFNIS 122
Query: 129 CXXXXXXXXXXXXXXXSLINDIRGMFSLHEAAYLAVRGEDILDEAIAFTTSHLKSIISIS 188
SL +D+ G+ +L+EA+++ +DIL++A+AF+T HL+S
Sbjct: 123 PEIFSKFQDENGKFKESLASDVLGLLNLYEASHVRTHADDILEDALAFSTIHLESAAP-- 180
Query: 189 DHSHVNSKLPEQIRRSLQIPLRKAAARLEARYFLD-IYSRDDLHDETLLKFAKLDFNILQ 247
H+ S L EQ+ +L+ L K R+E R+F+ IY ++ + LL+FAKLDFN+LQ
Sbjct: 181 ---HLKSPLREQVTHALEQCLHKGVPRVETRFFISSIYDKEQSKNNVLLRFAKLDFNLLQ 237
Query: 248 AAHQKEASIMTRWWNDLGFPKKVPYARDRIVETYIWMLLGVSYDPNLAFGRIFASKVMCM 307
H++E + ++RWW DL F +PYARDR+VE Y W LGV ++P + R+ K + M
Sbjct: 238 MLHKQELAQVSRWWKDLDFVTTLPYARDRVVECYFWA-LGVYFEPQYSQARVMLVKTISM 296
Query: 308 LTIIDDTFDAYGTFEQLTHFTEAVTR 333
++I+DDTFDAYGT ++L +T+A+ R
Sbjct: 297 ISIVDDTFDAYGTVKELEAYTDAIQR 322
>pdb|3LZ9|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase M4
Mut Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl
Diphospha
pdb|3M00|A Chain A, Crystal Structure Of 5-Epi-Aristolochene Synthase M4
Mutant Complexed With (2-Cis,6-Trans)-2-Fluorofarnesyl
Diphosphate
Length = 550
Score = 263 bits (673), Expect = 7e-71, Method: Compositional matrix adjust.
Identities = 136/330 (41%), Positives = 209/330 (63%), Gaps = 17/330 (5%)
Query: 10 AAVSSSTEETVRPIADFHPTLWGTHFLKSAADVETIDDATQEQHA----ALKQEVRRMIT 65
AAV++ EE VRP+ADF P+LWG FL +I + E++A ALK++ R M+
Sbjct: 6 AAVANYEEEIVRPVADFSPSLWGDQFLSF-----SIKNQVAEKYAKEIEALKEQTRNMLL 60
Query: 66 TTANKLAHKLHMIDSVQRLGVAYHFEKEIEDELGKV-SHDLDRDDLYVVSLRFRLFRQQG 124
T KLA L++ID+++RLG++YHFEKEI+D L ++ + + + +DL +L+FRL RQ G
Sbjct: 61 ATGMKLADTLNLIDTIERLGISYHFEKEIDDILDQIYNQNSNCNDLCTSALQFRLLRQHG 120
Query: 125 VKISCXXXXXXXXXXXXXXXSLINDIRGMFSLHEAAYLAVRGEDILDEAIAFTTSHLKSI 184
IS SL +D+ G+ +L+EA+++ +DIL++A+AF+T HL+S
Sbjct: 121 FNISPEIFSKFQDENGKFKESLASDVLGLLNLYEASHVRTHADDILEDALAFSTIHLESA 180
Query: 185 ISISDHSHVNSKLPEQIRRSLQIPLRKAAARLEARYFLD-IYSRDDLHDETLLKFAKLDF 243
H+ S L EQ+ +L+ L K R+E R+F+ IY ++ + LL+FAKLDF
Sbjct: 181 AP-----HLKSPLREQVTHALEQCLHKGVPRVETRFFISSIYDKEQSKNNVLLRFAKLDF 235
Query: 244 NILQAAHQKEASIMTRWWNDLGFPKKVPYARDRIVETYIWMLLGVSYDPNLAFGRIFASK 303
N+LQ H++E + ++RWW DL F +PYARDR+VE Y W LGV ++P + R+ K
Sbjct: 236 NLLQMLHKQELAQVSRWWKDLDFVTTLPYARDRVVECYFWT-LGVYFEPQYSQARVMLVK 294
Query: 304 VMCMLTIIDDTFDAYGTFEQLTHFTEAVTR 333
+ M++I+DDTFDAYGT ++L +T+A+ R
Sbjct: 295 TISMISIVDDTFDAYGTVKELEAYTDAIQR 324
>pdb|3M01|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase
Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl
Diphosphate
pdb|3M02|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase
Complexed With (2-Cis,6-Trans)-2-Fluorofarnesyl
Diphosphate
Length = 550
Score = 263 bits (672), Expect = 9e-71, Method: Compositional matrix adjust.
Identities = 136/330 (41%), Positives = 209/330 (63%), Gaps = 17/330 (5%)
Query: 10 AAVSSSTEETVRPIADFHPTLWGTHFLKSAADVETIDDATQEQHA----ALKQEVRRMIT 65
AAV++ EE VRP+ADF P+LWG FL +I + E++A ALK++ R M+
Sbjct: 6 AAVANYEEEIVRPVADFSPSLWGDQFLSF-----SIKNQVAEKYAKEIEALKEQTRNMLL 60
Query: 66 TTANKLAHKLHMIDSVQRLGVAYHFEKEIEDELGKV-SHDLDRDDLYVVSLRFRLFRQQG 124
T KLA L++ID+++RLG++YHFEKEI+D L ++ + + + +DL +L+FRL RQ G
Sbjct: 61 ATGMKLADTLNLIDTIERLGISYHFEKEIDDILDQIYNQNSNCNDLCTSALQFRLLRQHG 120
Query: 125 VKISCXXXXXXXXXXXXXXXSLINDIRGMFSLHEAAYLAVRGEDILDEAIAFTTSHLKSI 184
IS SL +D+ G+ +L+EA+++ +DIL++A+AF+T HL+S
Sbjct: 121 FNISPEIFSKFQDENGKFKESLASDVLGLLNLYEASHVRTHADDILEDALAFSTIHLESA 180
Query: 185 ISISDHSHVNSKLPEQIRRSLQIPLRKAAARLEARYFLD-IYSRDDLHDETLLKFAKLDF 243
H+ S L EQ+ +L+ L K R+E R+F+ IY ++ + LL+FAKLDF
Sbjct: 181 AP-----HLKSPLREQVTHALEQCLHKGVPRVETRFFISSIYDKEQSKNNVLLRFAKLDF 235
Query: 244 NILQAAHQKEASIMTRWWNDLGFPKKVPYARDRIVETYIWMLLGVSYDPNLAFGRIFASK 303
N+LQ H++E + ++RWW DL F +PYARDR+VE Y W LGV ++P + R+ K
Sbjct: 236 NLLQMLHKQELAQVSRWWKDLDFVTTLPYARDRVVECYFWA-LGVYFEPQYSQARVMLVK 294
Query: 304 VMCMLTIIDDTFDAYGTFEQLTHFTEAVTR 333
+ M++I+DDTFDAYGT ++L +T+A+ R
Sbjct: 295 TISMISIVDDTFDAYGTVKELEAYTDAIQR 324
>pdb|1HX9|A Chain A, Crystal Structure Of Teas W273s Form 1
pdb|1HXA|A Chain A, Crystal Structure Of Teas W273s Form 2
Length = 548
Score = 261 bits (667), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 136/330 (41%), Positives = 210/330 (63%), Gaps = 17/330 (5%)
Query: 10 AAVSSSTEETVRPIADFHPTLWGTHFLKSAADVETIDDATQEQHA----ALKQEVRRMIT 65
AAV++ EE VRP+ADF P+LWG FL +ID+ E++A ALK++ R M+
Sbjct: 4 AAVANYEEEIVRPVADFSPSLWGDQFLSF-----SIDNQVAEKYAKEIEALKEQTRNMLL 58
Query: 66 TTANKLAHKLHMIDSVQRLGVAYHFEKEIEDELGKV-SHDLDRDDLYVVSLRFRLFRQQG 124
T KLA L++ID+++RLG++YHFEKEI+D L ++ + + + +DL +L+FRL RQ G
Sbjct: 59 ATGMKLADTLNLIDTIERLGISYHFEKEIDDILDQIYNQNSNCNDLCTSALQFRLLRQHG 118
Query: 125 VKISCXXXXXXXXXXXXXXXSLINDIRGMFSLHEAAYLAVRGEDILDEAIAFTTSHLKSI 184
IS SL +D+ G+ +L+EA+++ +DIL++A+AF+T HL+S
Sbjct: 119 FNISPEIFSKFQDENGKFKESLASDVLGLLNLYEASHVRTHADDILEDALAFSTIHLESA 178
Query: 185 ISISDHSHVNSKLPEQIRRSLQIPLRKAAARLEARYFLD-IYSRDDLHDETLLKFAKLDF 243
H+ S L EQ+ +L+ L K R+E R+F+ IY ++ + LL+FAKLDF
Sbjct: 179 AP-----HLKSPLREQVTHALEQCLHKGVPRVETRFFISSIYDKEQSKNNVLLRFAKLDF 233
Query: 244 NILQAAHQKEASIMTRWWNDLGFPKKVPYARDRIVETYIWMLLGVSYDPNLAFGRIFASK 303
N+LQ H++E + ++RWW DL F +PYARDR+VE Y + LGV ++P + R+ K
Sbjct: 234 NLLQMLHKQELAQVSRWWKDLDFVTTLPYARDRVVECY-FSALGVYFEPQYSQARVMLVK 292
Query: 304 VMCMLTIIDDTFDAYGTFEQLTHFTEAVTR 333
+ M++I+DDTFDAYGT ++L +T+A+ R
Sbjct: 293 TISMISIVDDTFDAYGTVKELEAYTDAIQR 322
>pdb|1HXG|A Chain A, Crystal Structure Of Teas W273sC440W
Length = 548
Score = 261 bits (667), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 136/330 (41%), Positives = 210/330 (63%), Gaps = 17/330 (5%)
Query: 10 AAVSSSTEETVRPIADFHPTLWGTHFLKSAADVETIDDATQEQHA----ALKQEVRRMIT 65
AAV++ EE VRP+ADF P+LWG FL +ID+ E++A ALK++ R M+
Sbjct: 4 AAVANYEEEIVRPVADFSPSLWGDQFLSF-----SIDNQVAEKYAKEIEALKEQTRNMLL 58
Query: 66 TTANKLAHKLHMIDSVQRLGVAYHFEKEIEDELGKV-SHDLDRDDLYVVSLRFRLFRQQG 124
T KLA L++ID+++RLG++YHFEKEI+D L ++ + + + +DL +L+FRL RQ G
Sbjct: 59 ATGMKLADTLNLIDTIERLGISYHFEKEIDDILDQIYNQNSNCNDLCTSALQFRLLRQHG 118
Query: 125 VKISCXXXXXXXXXXXXXXXSLINDIRGMFSLHEAAYLAVRGEDILDEAIAFTTSHLKSI 184
IS SL +D+ G+ +L+EA+++ +DIL++A+AF+T HL+S
Sbjct: 119 FNISPEIFSKFQDENGKFKESLASDVLGLLNLYEASHVRTHADDILEDALAFSTIHLESA 178
Query: 185 ISISDHSHVNSKLPEQIRRSLQIPLRKAAARLEARYFLD-IYSRDDLHDETLLKFAKLDF 243
H+ S L EQ+ +L+ L K R+E R+F+ IY ++ + LL+FAKLDF
Sbjct: 179 AP-----HLKSPLREQVTHALEQCLHKGVPRVETRFFISSIYDKEQSKNNVLLRFAKLDF 233
Query: 244 NILQAAHQKEASIMTRWWNDLGFPKKVPYARDRIVETYIWMLLGVSYDPNLAFGRIFASK 303
N+LQ H++E + ++RWW DL F +PYARDR+VE Y + LGV ++P + R+ K
Sbjct: 234 NLLQMLHKQELAQVSRWWKDLDFVTTLPYARDRVVECY-FSALGVYFEPQYSQARVMLVK 292
Query: 304 VMCMLTIIDDTFDAYGTFEQLTHFTEAVTR 333
+ M++I+DDTFDAYGT ++L +T+A+ R
Sbjct: 293 TISMISIVDDTFDAYGTVKELEAYTDAIQR 322
>pdb|4DI5|A Chain A, Co-Crystal Structure Of Wt 5-Epi-Aristolochene Synthase
From Nicotiana Tobaccum With Geraniline
Length = 535
Score = 255 bits (651), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 131/320 (40%), Positives = 202/320 (63%), Gaps = 17/320 (5%)
Query: 20 VRPIADFHPTLWGTHFLKSAADVETIDDATQEQHA----ALKQEVRRMITTTANKLAHKL 75
VRP+ADF P+LWG FL +I + E++A ALK++ R M+ T KLA L
Sbjct: 1 VRPVADFSPSLWGDQFLSF-----SIKNQVAEKYAKEIEALKEQTRNMLLATGMKLADTL 55
Query: 76 HMIDSVQRLGVAYHFEKEIEDELGKV-SHDLDRDDLYVVSLRFRLFRQQGVKISCXXXXX 134
++ID+++RLG++YHFEKEI+D L ++ + + + +DL +L+FRL RQ G IS
Sbjct: 56 NLIDTIERLGISYHFEKEIDDILDQIYNQNSNCNDLCTSALQFRLLRQHGFNISPEIFSK 115
Query: 135 XXXXXXXXXXSLINDIRGMFSLHEAAYLAVRGEDILDEAIAFTTSHLKSIISISDHSHVN 194
SL +D+ G+ +L+EA+++ +DIL++A+AF+T HL+S H+
Sbjct: 116 FQDENGKFKESLASDVLGLLNLYEASHVRTHADDILEDALAFSTIHLESAAP-----HLK 170
Query: 195 SKLPEQIRRSLQIPLRKAAARLEARYFLD-IYSRDDLHDETLLKFAKLDFNILQAAHQKE 253
S L EQ+ +L+ L K R+E R+F+ IY ++ + LL+FAKLDFN+LQ H++E
Sbjct: 171 SPLREQVTHALEQCLHKGVPRVETRFFISSIYDKEQSKNNVLLRFAKLDFNLLQMLHKQE 230
Query: 254 ASIMTRWWNDLGFPKKVPYARDRIVETYIWMLLGVSYDPNLAFGRIFASKVMCMLTIIDD 313
+ ++RWW DL F +PYARDR+VE Y W LGV ++P + R+ K + M++I+DD
Sbjct: 231 LAQVSRWWKDLDFVTTLPYARDRVVECYFWA-LGVYFEPQYSQARVMLVKTISMISIVDD 289
Query: 314 TFDAYGTFEQLTHFTEAVTR 333
TFDAYGT ++L +T+A+ R
Sbjct: 290 TFDAYGTVKELEAYTDAIQR 309
>pdb|3N0F|A Chain A, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens)
pdb|3N0F|B Chain B, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens)
pdb|3N0G|A Chain A, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens) In Complex With Three Mg2+
Ions And Dimethylallyl-S-Thiolodiphosphate
pdb|3N0G|B Chain B, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens) In Complex With Three Mg2+
Ions And Dimethylallyl-S-Thiolodiphosphate
Length = 555
Score = 199 bits (505), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 110/319 (34%), Positives = 180/319 (56%), Gaps = 11/319 (3%)
Query: 20 VRPIADFHPTLWGTHFLKSAADVETIDDATQEQHAALKQEVRRMITTTANKLAHKLHMID 79
R AD+ P W FL S+ E+I+ +++ L+ EVRR I + L +ID
Sbjct: 14 ARRSADYEPNSWDYDFLLSSDTDESIE-VYKDKAKKLEAEVRREINNEKAEFLTLLELID 72
Query: 80 SVQRLGVAYHFEKEIEDELGKV--SHDLD---RDDLYVVSLRFRLFRQQGVKISCXXXXX 134
+VQRLG+ Y FE +I L + S D + L+ +L FRL RQ G ++S
Sbjct: 73 NVQRLGLGYRFESDIRRALDRFVSSGGFDGVTKTSLHATALSFRLLRQHGFEVSQEAFSG 132
Query: 135 XXXXXXXXXXSLINDIRGMFSLHEAAYLAVRGEDILDEAIAFTTSHLKSIISISDHSHVN 194
+L D + + SL+EA++LA+ GE+ILDEA F SHLK + +
Sbjct: 133 FKDQNGNFLENLKEDTKAILSLYEASFLALEGENILDEARVFAISHLKEL----SEEKIG 188
Query: 195 SKLPEQIRRSLQIPLRKAAARLEARYFLDIYSRDDLHDETLLKFAKLDFNILQAAHQKEA 254
+L EQ+ +L++PL + RLEA + ++ Y + + ++ LL+ A LD+N++Q+ +Q++
Sbjct: 189 KELAEQVNHALELPLHRRTQRLEAVWSIEAYRKKEDANQVLLELAILDYNMIQSVYQRDL 248
Query: 255 SIMTRWWNDLGFPKKVPYARDRIVETYIWMLLGVSYDPNLAFGRIFASKVMCMLTIIDDT 314
+RWW +G K+ +ARDR++E++ W +GV+++P + R +K+ +TIIDD
Sbjct: 249 RETSRWWRRVGLATKLHFARDRLIESFYWA-VGVAFEPQYSDCRNSVAKMFSFVTIIDDI 307
Query: 315 FDAYGTFEQLTHFTEAVTR 333
+D YGT ++L FT+AV R
Sbjct: 308 YDVYGTLDELELFTDAVER 326
>pdb|2J5C|A Chain A, Rational Conversion Of Substrate And Product Specificity
In A Monoterpene Synthase. Structural Insights Into The
Molecular Basis Of Rapid Evolution.
pdb|2J5C|B Chain B, Rational Conversion Of Substrate And Product Specificity
In A Monoterpene Synthase. Structural Insights Into The
Molecular Basis Of Rapid Evolution
Length = 569
Score = 177 bits (448), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 107/314 (34%), Positives = 167/314 (53%), Gaps = 11/314 (3%)
Query: 24 ADFHPTLWGTHFLKSAADVETIDDATQEQHAALKQEVRRMITTTANKLAHKLHMIDSVQR 83
+ PTLW ++S D E ++ + A + +V+ M+ + + +L +ID ++R
Sbjct: 38 GGYQPTLWDFSTIQSF-DSEYKEEKHLMRAAGMIDQVKMMLQEEVDSI-RRLELIDDLRR 95
Query: 84 LGVAYHFEKEIEDELGK---VSHDLDRDDLYVVSLRFRLFRQQGVKISCXXXXXXXXXXX 140
LG++ HFE+EI + L ++++D DLY +LRFRL RQ +S
Sbjct: 96 LGISCHFEREIVEILNSKYYTNNEIDERDLYSTALRFRLLRQYDFSVSQEVFDCFKNAKG 155
Query: 141 X-XXXSLINDIRGMFSLHEAAYLAVRGEDILDEAIAFTTSHLKSIISISDHSHVNSKLPE 199
SL++D RG+ L+EA++L+ +GE+ L A F T L+ + + + L
Sbjct: 156 TDFKPSLVDDTRGLLQLYEASFLSAQGEETLRLARDFATKFLQKRVLVDK----DINLLS 211
Query: 200 QIRRSLQIPLRKAAARLEARYFLDIYSRDDLHDETLLKFAKLDFNILQAAHQKEASIMTR 259
I R+L++P AR F+D Y R + T+L+ AKLDFN++QA Q+E +R
Sbjct: 212 SIERALELPTHWRVQMPNARSFIDAYKRRPDMNPTVLELAKLDFNMVQAQFQQELKEASR 271
Query: 260 WWNDLGFPKKVPYARDRIVETYIWMLLGVSYDPNLAFGRIFASKVMCMLTIIDDTFDAYG 319
WWN G ++P+ RDRIVE Y W GV + RI +K+ ++T IDD FD YG
Sbjct: 272 WWNSTGLVHELPFVRDRIVECYYWT-TGVVERRQHGYERIMLTKINALVTTIDDVFDIYG 330
Query: 320 TFEQLTHFTEAVTR 333
T E+L FT A+ R
Sbjct: 331 TLEELQLFTTAIQR 344
>pdb|1N1B|A Chain A, Crystal Structure Of (+)-bornyl Diphosphate Synthase From
Sage
pdb|1N1B|B Chain B, Crystal Structure Of (+)-bornyl Diphosphate Synthase From
Sage
pdb|1N1Z|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Pyrophosphate
pdb|1N1Z|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Pyrophosphate
pdb|1N20|A Chain A, (+)-bornyl Diphosphate Synthase: Complex With Mg And
3-aza- 2,3-dihydrogeranyl Diphosphate
pdb|1N20|B Chain B, (+)-bornyl Diphosphate Synthase: Complex With Mg And
3-aza- 2,3-dihydrogeranyl Diphosphate
pdb|1N21|A Chain A, (+)-Bornyl Diphosphate Synthase: Cocrystal With Mg And 3-
Aza-2,3-Dihydrogeranyl Diphosphate
pdb|1N22|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (4r)-7-Aza-7,8-Dihydrolimonene
pdb|1N22|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (4r)-7-Aza-7,8-Dihydrolimonene
pdb|1N23|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (1r,4s)-2-Azabornane
pdb|1N23|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (1r,4s)-2-Azabornane
pdb|1N24|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Product
pdb|1N24|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Product
Length = 549
Score = 174 bits (441), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 103/326 (31%), Positives = 177/326 (54%), Gaps = 19/326 (5%)
Query: 20 VRPIADFHPTLWGTHFLKSAADVETIDDATQEQHAALKQEV---RRMITTTANKLAHKLH 76
+R ++ P LW +++++S T+E+H K E+ R++ + +L
Sbjct: 5 IRRSGNYQPALWDSNYIQSLNT-----PYTEERHLDRKAELIVQVRILLKEKMEPVQQLE 59
Query: 77 MIDSVQRLGVAYHFEKEIEDELGKV--------SHDLDRDDLYVVSLRFRLFRQQGVKIS 128
+I ++ LG++ F+ EI++ LG + ++++++ DLY +L FRL RQ G IS
Sbjct: 60 LIHDLKYLGLSDFFQDEIKEILGVIYNEHKCFHNNEVEKMDLYFTALGFRLLRQHGFNIS 119
Query: 129 CXXXXXXXXXXXX-XXXSLINDIRGMFSLHEAAYLAVRGEDILDEAIAFTTSHLKSIISI 187
SL D +GM L+EA++L +GED L+ A F T L+ +
Sbjct: 120 QDVFNCFKNEKGIDFKASLAQDTKGMLQLYEASFLLRKGEDTLELAREFATKCLQKKLD- 178
Query: 188 SDHSHVNSKLPEQIRRSLQIPLRKAAARLEARYFLDIYSRDDLHDETLLKFAKLDFNILQ 247
+ ++ L IR SL +PL +EAR+F+D Y+R + + + AKL+FNI+Q
Sbjct: 179 EGGNEIDENLLLWIRHSLDLPLHWRIQSVEARWFIDAYARRPDMNPLIFELAKLNFNIIQ 238
Query: 248 AAHQKEASIMTRWWNDLGFPKKVPYARDRIVETYIWMLLGVSYDPNLAFGRIFASKVMCM 307
A HQ+E ++RWW+ L FP+K+P+ RDR+VE++ W +G+ + R A+ ++ +
Sbjct: 239 ATHQQELKDLSRWWSRLCFPEKLPFVRDRLVESFFWA-VGMFEPHQHGYQRKMAATIIVL 297
Query: 308 LTIIDDTFDAYGTFEQLTHFTEAVTR 333
T+IDD +D YGT ++L FT+ R
Sbjct: 298 ATVIDDIYDVYGTLDELELFTDTFKR 323
>pdb|2ONG|A Chain A, Crystal Structure Of Of Limonene Synthase With 2-
Fluorogeranyl Diphosphate (Fgpp).
pdb|2ONG|B Chain B, Crystal Structure Of Of Limonene Synthase With 2-
Fluorogeranyl Diphosphate (Fgpp).
pdb|2ONH|A Chain A, Crystal Structure Of Of Limonene Synthase With 2-
Fluorolinalyl Diphosphate(flpp)
pdb|2ONH|B Chain B, Crystal Structure Of Of Limonene Synthase With 2-
Fluorolinalyl Diphosphate(flpp)
Length = 543
Score = 165 bits (418), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 101/326 (30%), Positives = 164/326 (50%), Gaps = 21/326 (6%)
Query: 20 VRPIADFHPTLWGTHFLKSAADVETIDDATQEQHAALKQEVRRMITTTANKLA---HKLH 76
+R +++P+ W +F++S + D +++H E+ ++ K +L
Sbjct: 1 MRRSGNYNPSRWDVNFIQS-----LLSDYKEDKHVIRASELVTLVKMELEKETDQIRQLE 55
Query: 77 MIDSVQRLGVAYHFEKEIEDELGKVSHD---------LDRDDLYVVSLRFRLFRQQGVKI 127
+ID +QR+G++ HF+ E ++ L + D + DLY SL FRL R+ G ++
Sbjct: 56 LIDDLQRMGLSDHFQNEFKEILSSIYLDHHYYKNPFPKEERDLYSTSLAFRLLREHGFQV 115
Query: 128 SCXXXXXXXXXXXXXXXSLINDIRGMFSLHEAAYLAVRGEDILDEAIAFTTSHLKSIISI 187
+ SL +D RG+ L+EA++L GE L+ A F T L+ +
Sbjct: 116 AQEVFDSFKNEEGEFKESLSDDTRGLLQLYEASFLLTEGETTLESAREFATKFLEEKV-- 173
Query: 188 SDHSHVNSKLPEQIRRSLQIPLRKAAARLEARYFLDIYSRDDLHDETLLKFAKLDFNILQ 247
+ V+ L +I SL IPL R A +++ Y + + +L+ A LD NI+Q
Sbjct: 174 -NEGGVDGDLLTRIAYSLDIPLHWRIKRPNAPVWIEWYRKRPDMNPVVLELAILDLNIVQ 232
Query: 248 AAHQKEASIMTRWWNDLGFPKKVPYARDRIVETYIWMLLGVSYDPNLAFGRIFASKVMCM 307
A Q+E RWW + GF +K+P+ARDR+VE Y W G+ A RI KV +
Sbjct: 233 AQFQEELKESFRWWRNTGFVEKLPFARDRLVECYFWN-TGIIEPRQHASARIMMGKVNAL 291
Query: 308 LTIIDDTFDAYGTFEQLTHFTEAVTR 333
+T+IDD +D YGT E+L FT+ + R
Sbjct: 292 ITVIDDIYDVYGTLEELEQFTDLIRR 317
>pdb|3SAE|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDQ|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDR|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDT|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDU|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDV|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
Length = 817
Score = 142 bits (359), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 97/292 (33%), Positives = 151/292 (51%), Gaps = 31/292 (10%)
Query: 71 LAHKLHMIDSVQRLGVAYHFEKEIEDELGKV-SHDLDRD----------DLYVVSLRFRL 119
L +L ++D++ RLG+ HFEKEI++ L V H +R DL +L FRL
Sbjct: 298 LLERLLIVDNIVRLGIYRHFEKEIKEALDYVYRHWNERGIGWGRLNPIADLETTALGFRL 357
Query: 120 FRQQGVKISCXXXXXXXXXXXXXXXS---LINDIRGMFSLHEAAYLAVRGEDILDEAIAF 176
R +S S D+ M +L+ A+ LA GE+ILDEA +F
Sbjct: 358 LRLHRYNVSPAIFDNFKDANGKFICSTGQFNKDVASMLNLYRASQLAFPGENILDEAKSF 417
Query: 177 TTSHLKSIISISDHSHV-NSK--LPEQIRRSLQIPLRKAAARLEARYFLDIYSRDD---- 229
T +L+ + S+ S N+K L ++I+ +L+ + R+EA+ + +Y D
Sbjct: 418 ATKYLREALEKSETSSAWNNKQNLSQEIKYALKTSWHASVPRVEAKRYCQVYRPDYARIA 477
Query: 230 --------LHDETLLKFAKLDFNILQAAHQKEASIMTRWWNDLGFPKKVPYARDRIVETY 281
+++E L+ KLDFNI+Q+ HQ+E +T W+ D G P +AR+R +E Y
Sbjct: 478 KCVYKLPYVNNEKFLELGKLDFNIIQSIHQEEMKNVTSWFRDSGLPL-FTFARERPLEFY 536
Query: 282 IWMLLGVSYDPNLAFGRIFASKVMCMLTIIDDTFDAYGTFEQLTHFTEAVTR 333
+ G +Y+P A R +KV C+ T++DD +D YGT ++L FTEAV R
Sbjct: 537 FLVAAG-TYEPQYAKCRFLFTKVACLQTVLDDMYDTYGTLDELKLFTEAVRR 587
Score = 31.6 bits (70), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 7/55 (12%)
Query: 14 SSTEETVRPIADFHPTLWG---THFLKSAADVETIDDATQEQHAALKQEVRRMIT 65
SST +R A+ HP +WG H LKS ID + +E+ L E++ M+
Sbjct: 18 SSTSGLIRRTANPHPNVWGYDLVHSLKSP----YIDSSYRERAEVLVSEIKAMLN 68
>pdb|3P5P|A Chain A, Crystal Structure Of Taxadiene Synthase From Pacific Yew
(Taxus Brevifolia) In Complex With Mg2+ And
13-Aza-13,14-Dihydrocopalyl Diphosphate
pdb|3P5R|A Chain A, Crystal Structure Of Taxadiene Synthase From Pacific Yew
(Taxus Brevifolia) In Complex With Mg2+ And
2-Fluorogeranylgeranyl Diphosphate
pdb|3P5R|B Chain B, Crystal Structure Of Taxadiene Synthase From Pacific Yew
(Taxus Brevifolia) In Complex With Mg2+ And
2-Fluorogeranylgeranyl Diphosphate
Length = 764
Score = 117 bits (292), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 80/289 (27%), Positives = 135/289 (46%), Gaps = 32/289 (11%)
Query: 71 LAHKLHMIDSVQRLGVAYHFEKEIEDELGKVSH-------DLDRD----DLYVVSLRFRL 119
L +L ++D+++ LG+ HF++EI+ L V RD DL +L R
Sbjct: 246 LLERLSLVDNIEHLGIGRHFKQEIKGALDYVYRHWSERGIGWGRDSLVPDLNTTALGLRT 305
Query: 120 FRQQGVKISCXXXXXXXXXXXXXXXSLIN---DIRGMFSLHEAAYLAVRGEDILDEAIAF 176
R G +S S ++R + +L A+ LA E +D+A F
Sbjct: 306 LRMHGYNVSSDVLNNFKDENGRFFSSAGQTHVELRSVVNLFRASDLAFPDERAMDDARKF 365
Query: 177 TTSHLKSIISISDHSHVNSKLPEQIRRSLQIPLRKAAARLEARYFLD------------I 224
+L+ +++ N+KL ++I ++ P + RLEAR ++D +
Sbjct: 366 AEPYLRE--ALATKISTNTKLFKEIEYVVEYPWHMSIPRLEARSYIDSYDDNYVWQRKTL 423
Query: 225 YSRDDLHDETLLKFAKLDFNILQAAHQKEASIMTRWWNDLGFPKKVPYARDRIVETYIWM 284
Y L + L+ AKLDFNI+Q+ HQ+E ++TRWW + G + + R R+ E Y
Sbjct: 424 YRMPSLSNSKCLELAKLDFNIVQSLHQEELKLLTRWWKESGM-ADINFTRHRVAEVY--- 479
Query: 285 LLGVSYDPNLAFGRIFASKVMCMLTIIDDTFDAYGTFEQLTHFTEAVTR 333
+++P + RI +K+ C+ + DD D + T ++L FTE V R
Sbjct: 480 FSSATFEPEYSATRIAFTKIGCLQVLFDDMADIFATLDELKSFTEGVKR 528
>pdb|3S9V|A Chain A, Abietadiene Synthase From Abies Grandis
pdb|3S9V|B Chain B, Abietadiene Synthase From Abies Grandis
pdb|3S9V|C Chain C, Abietadiene Synthase From Abies Grandis
pdb|3S9V|D Chain D, Abietadiene Synthase From Abies Grandis
Length = 785
Score = 109 bits (272), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 80/292 (27%), Positives = 137/292 (46%), Gaps = 31/292 (10%)
Query: 71 LAHKLHMIDSVQRLGVAYHFEKEIEDELGKV-SHDLDRD----------DLYVVSLRFRL 119
L +L +D+V+RLG+ HF++EI++ L V SH +R D+ ++ R+
Sbjct: 270 LFERLWAVDTVERLGIDRHFKEEIKEALDYVYSHWDERGIGWARENPVPDIDDTAMGLRI 329
Query: 120 FRQQGVKISCXXXXXXXXXXXXXXXSLINDIRG---MFSLHEAAYLAVRGEDILDEAIAF 176
R G +S L RG M +++ ++++ GE I++EA
Sbjct: 330 LRLHGYNVSSDVLKTFRDENGEFFCFLGQTQRGVTDMLNVNRCSHVSFPGETIMEEAKLC 389
Query: 177 TTSHLKSI---ISISDHSHVNSKLPEQIRRSLQIPLRKAAARLEARYFLDIYSRDD---- 229
T +L++ + D + ++ +L+ P K+ RLEAR +++ Y DD
Sbjct: 390 TERYLRNALENVDAFDKWAFKKNIRGEVEYALKYPWHKSMPRLEARSYIENYGPDDVWLG 449
Query: 230 --------LHDETLLKFAKLDFNILQAAHQKEASIMTRWWNDLGFPKKVPYARDRIVETY 281
+ +E L+ AKLDFN +Q+ HQ E + RWW GF + + R+R+ E Y
Sbjct: 450 KTVYMMPYISNEKYLELAKLDFNKVQSIHQTELQDLRRWWKSSGF-TDLNFTRERVTEIY 508
Query: 282 IWMLLGVSYDPNLAFGRIFASKVMCMLTIIDDTFDAYGTFEQLTHFTEAVTR 333
++P + R +K I+DD +DA+G+ + L FTE+V R
Sbjct: 509 F-SPASFIFEPEFSKCREVYTKTSNFTVILDDLYDAHGSLDDLKLFTESVKR 559
>pdb|3PYA|A Chain A, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From
Arabidopsis Thaliana In Complex With
(S)-15-Aza-14,15-Dihydrogeranylgeranyl Thiolodiphosphate
pdb|3PYB|A Chain A, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From
Arabidopsis Thaliana In Complex With
13-Aza-13,14-Dihydrocopalyl Diphosphate
pdb|3PYB|B Chain B, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From
Arabidopsis Thaliana In Complex With
13-Aza-13,14-Dihydrocopalyl Diphosphate
pdb|3PYB|C Chain C, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From
Arabidopsis Thaliana In Complex With
13-Aza-13,14-Dihydrocopalyl Diphosphate
Length = 727
Score = 81.3 bits (199), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 64/244 (26%), Positives = 112/244 (45%), Gaps = 39/244 (15%)
Query: 56 LKQEVRRMITTTAN----KLAHKLHMIDSVQRLGVAYHFEKEIEDEL------------- 98
L+ V+R N L + ++D +QRLG++ +FE+EI++ L
Sbjct: 226 LRNAVKRFNGGVPNVFPVDLFEHIWIVDRLQRLGISRYFEEEIKECLDYVHRYWTDNGIC 285
Query: 99 -GKVSHDLDRDDLYVVSLRFRLFRQQGVKISCXXXXXXXXXXXXXXXSLIND--IRGMFS 155
+ SH D DD ++ FRL RQ G ++S ++ + GMF+
Sbjct: 286 WARCSHVQDIDD---TAMAFRLLRQHGYQVSADVFKNFEKEGEFFCFVGQSNQAVTGMFN 342
Query: 156 LHEAAYLAVRGEDILDEAIAFTTSHL---KSIISISDHSHVNSKLPEQIRRSLQIPLRKA 212
L+ A+ LA E+IL A F+ ++L + + D + LP +I +L+IP +
Sbjct: 343 LYRASQLAFPREEILKNAKEFSYNYLLEKREREELIDKWIIMKDLPGEIGFALEIPWYAS 402
Query: 213 AARLEARYFLDIYSRDD-------------LHDETLLKFAKLDFNILQAAHQKEASIMTR 259
R+E R+++D Y ++ +++ L+ AK D+N QA HQ E I +
Sbjct: 403 LPRVETRFYIDQYGGENDVWIGKTLYRMPYVNNNGYLELAKQDYNNCQAQHQLEWDIFQK 462
Query: 260 WWND 263
W+ +
Sbjct: 463 WYEE 466
>pdb|2I5I|A Chain A, Crystal Structure Of A Putative Cellobiose-phosphate
Cleavage Protein (ef3048) From Enterococcus Faecalis
V583 At 1.70 A Resolution
pdb|2I5I|B Chain B, Crystal Structure Of A Putative Cellobiose-phosphate
Cleavage Protein (ef3048) From Enterococcus Faecalis
V583 At 1.70 A Resolution
Length = 263
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 21/36 (58%)
Query: 203 RSLQIPLRKAAARLEARYFLDIYSRDDLHDETLLKF 238
R Q+PLR A+ +E + +L++Y DE L +F
Sbjct: 149 RKYQLPLRNASRSIETKDYLELYQDVRTPDEXLYQF 184
>pdb|3RJ2|X Chain X, Structural And Functional Characterization Of A Novel
Histone H3 Binding Protein Orf158l From The Singapore
Grouper Iridovirus (Sgiv)
Length = 138
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 7/75 (9%)
Query: 163 AVRGEDILDEAIAFTTSHLKSIISISDHSHVNSKLPEQIRRSLQIPLRKAAARLEARYFL 222
+V GE + + F + + I H+H+N L + + SL +P A AR+ A +
Sbjct: 48 SVDGEMFMRHRVTFFNATGRYIT----HTHLNHGLEDVLEGSLAVPKDAAYARIHAAINV 103
Query: 223 DIYSRDDLH---DET 234
+ + D+H DET
Sbjct: 104 SLTNPGDVHMHYDET 118
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.135 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,591,795
Number of Sequences: 62578
Number of extensions: 309371
Number of successful extensions: 979
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 871
Number of HSP's gapped (non-prelim): 24
length of query: 334
length of database: 14,973,337
effective HSP length: 99
effective length of query: 235
effective length of database: 8,778,115
effective search space: 2062857025
effective search space used: 2062857025
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 52 (24.6 bits)