Query 019916
Match_columns 334
No_of_seqs 155 out of 698
Neff 5.4
Searched_HMMs 46136
Date Fri Mar 29 05:33:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019916.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019916hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd00684 Terpene_cyclase_plant_ 100.0 3E-107 6E-112 835.1 28.7 310 21-334 1-319 (542)
2 PLN02279 ent-kaur-16-ene synth 100.0 8.2E-92 1.8E-96 742.5 22.3 263 68-334 267-552 (784)
3 PLN02592 ent-copalyl diphospha 100.0 1.5E-89 3.3E-94 724.0 23.8 262 68-332 307-598 (800)
4 PF01397 Terpene_synth: Terpen 100.0 7.7E-59 1.7E-63 418.4 14.9 172 31-205 1-183 (183)
5 PF03936 Terpene_synth_C: Terp 99.7 9.4E-19 2E-23 161.8 5.4 99 235-334 1-99 (270)
6 cd00868 Terpene_cyclase_C1 Ter 99.5 4.9E-14 1.1E-18 131.3 8.9 85 249-334 1-85 (284)
7 cd00687 Terpene_cyclase_nonpla 97.6 0.00012 2.5E-09 69.8 6.8 77 256-334 18-96 (303)
8 cd07604 BAR_ASAPs The Bin/Amph 35.8 39 0.00084 31.6 3.3 87 46-138 11-100 (215)
9 PRK09177 xanthine-guanine phos 34.2 11 0.00025 33.1 -0.4 23 307-329 86-108 (156)
10 KOG3951 Uncharacterized conser 33.8 60 0.0013 31.7 4.3 57 137-206 264-320 (321)
11 PF00156 Pribosyltran: Phospho 31.5 15 0.00032 29.7 -0.1 20 308-327 91-110 (125)
12 COG1580 FliL Flagellar basal b 27.1 87 0.0019 28.1 3.9 85 24-115 70-156 (159)
13 TIGR00201 comF comF family pro 24.7 19 0.0004 32.4 -0.8 20 308-327 155-174 (190)
14 COG3063 PilF Tfp pilus assembl 24.6 5.5E+02 0.012 24.9 8.9 145 55-234 53-208 (250)
15 COG2236 Predicted phosphoribos 24.2 33 0.00071 31.7 0.7 23 308-330 90-112 (192)
16 PRK11595 DNA utilization prote 23.9 19 0.00042 33.4 -0.9 21 308-328 190-210 (227)
17 COG1040 ComFC Predicted amidop 22.7 32 0.00069 32.2 0.3 22 308-329 187-208 (225)
18 PF11848 DUF3368: Domain of un 22.0 30 0.00065 24.5 0.0 18 119-136 27-44 (48)
19 PF12626 PolyA_pol_arg_C: Poly 21.0 1.3E+02 0.0027 25.9 3.6 28 239-266 65-92 (124)
20 PF14164 YqzH: YqzH-like prote 20.7 52 0.0011 25.4 1.1 20 116-135 10-29 (64)
21 PF05384 DegS: Sensor protein 20.6 2.1E+02 0.0045 25.7 5.1 53 48-102 31-87 (159)
22 COG1725 Predicted transcriptio 20.1 2.2E+02 0.0048 24.6 4.9 66 109-176 48-119 (125)
23 PRK05205 bifunctional pyrimidi 20.1 36 0.00077 30.3 0.1 21 308-328 98-118 (176)
24 PF00233 PDEase_I: 3'5'-cyclic 20.0 31 0.00067 32.3 -0.3 47 81-127 44-90 (237)
No 1
>cd00684 Terpene_cyclase_plant_C1 Plant Terpene Cyclases, Class 1. This CD includes a diverse group of monomeric plant terpene cyclases (Tspa-Tspf) that convert the acyclic isoprenoid diphosphates, geranyl diphosphate (GPP), farnesyl diphosphate (FPP), or geranylgeranyl diphosphate (GGPP) into cyclic monoterpenes, diterpenes, or sesquiterpenes, respectively; a few form acyclic species. Terpnoid cyclases are soluble enzymes localized to the cytosol (sesquiterpene synthases) or plastids (mono- and diterpene synthases). All monoterpene and diterpene synthases have restrict substrate specificity, however, some sesquiterpene synthases can accept both FPP and GPP. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions located on opposite walls. These residues mediate binding of prenyl diphosphates, via bridging Mg2+ ions (K+ preferred by gymnosperm cyclases), inducing conformational changes such that an N-terminal regi
Probab=100.00 E-value=2.8e-107 Score=835.08 Aligned_cols=310 Identities=49% Similarity=0.881 Sum_probs=292.8
Q ss_pred CCCCCCCCCCccc-cccccCCchhhcchHHHHHHHHHHHHHHHHHhhc--hhcccchhhHhHHHHHhCcccccHHHHHHH
Q 019916 21 RPIADFHPTLWGT-HFLKSAADVETIDDATQEQHAALKQEVRRMITTT--ANKLAHKLHMIDSVQRLGVAYHFEKEIEDE 97 (334)
Q Consensus 21 r~~a~~~psiW~d-~fl~~~~~~~~~~~~~~~~~e~Lk~eVr~ml~~~--~~~~~~~L~lID~LqRLGI~~hFe~EI~~~ 97 (334)
||++||+||+||| +|+++++++.. ...+.+++++||++||+||... +.|++++|+|||+||||||+|||++||+++
T Consensus 1 r~~~~~~~~~w~~~~~~s~~~~~~~-~~~~~~~~~~lk~~v~~~~~~~~~~~~~~~~l~liD~lqrLGi~~hF~~EI~~~ 79 (542)
T cd00684 1 RPSANFPPSLWGDDHFLSLSSDYSE-EDELEEEIEELKEEVRKMLEDSEYPVDLFERLWLIDRLQRLGISYHFEDEIKEI 79 (542)
T ss_pred CCCCCCCCCcCCCcceeecCCCcch-hHHHHHHHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHHHcCchhhhHHHHHHH
Confidence 7899999999999 77776554432 2378999999999999999864 679999999999999999999999999999
Q ss_pred HHHhhh-cC-----CCCChhhhhHHHHhhhhcCceeecccccceecccCccchhhhhhHHHHHhHHhhhccCCCCchHHH
Q 019916 98 LGKVSH-DL-----DRDDLYVVSLRFRLFRQQGVKISCDVFEKFKDDEGKFKESLINDIRGMFSLHEAAYLAVRGEDILD 171 (334)
Q Consensus 98 L~~i~~-~~-----~~~dL~~~AL~FRLLRqhGy~VS~DvF~~F~d~~G~F~~~l~~D~~glLsLYeAS~l~~~gE~iLd 171 (334)
|++||+ |. ...||++|||+|||||||||+||||||++|+|++|+|++++.+|++||||||||||+++|||+|||
T Consensus 80 L~~i~~~~~~~~~~~~~dl~~~al~FRlLR~~Gy~vs~dvf~~F~~~~g~f~~~~~~d~~g~l~Ly~As~l~~~gE~iLd 159 (542)
T cd00684 80 LDYIYRYWTERGESNEDDLYTTALGFRLLRQHGYNVSSDVFKKFKDEDGKFKESLTQDVKGMLSLYEASHLSFPGEDILD 159 (542)
T ss_pred HHHHHHhhcccccccCCCHHHHHHHHHHHHHcCCCcCHHHHhhhcCCCCCcCchhhhhhHHHHHHHHHhhcCCCCcHHHH
Confidence 999998 42 247999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhccCCCCCCCChHHHHHHhcCCCccccchhhHHHHhHHhhcCCCCCcHHHHHHHHHhhHHHHHhhH
Q 019916 172 EAIAFTTSHLKSIISISDHSHVNSKLPEQIRRSLQIPLRKAAARLEARYFLDIYSRDDLHDETLLKFAKLDFNILQAAHQ 251 (334)
Q Consensus 172 eA~~Ft~~~L~~~~~~~~~~~~~~~L~~~V~~aL~~P~h~~~~Rlear~yI~~Y~~~~~~n~~lLelAKlDFn~~Q~~hq 251 (334)
||++||++||++.++++ +.++++|+++|++||++|||+++||||||+||++|++++++|++||||||+|||+||++||
T Consensus 160 eA~~ft~~~L~~~~~~~--~~~~~~l~~~V~~aL~~P~~~~~~rlear~yi~~Y~~~~~~n~~lLelAkldfn~~Q~~hq 237 (542)
T cd00684 160 EALSFTTKHLEEKLESN--WIIDPDLSGEIEYALEIPLHASLPRLEARWYIEFYEQEDDHNETLLELAKLDFNILQALHQ 237 (542)
T ss_pred HHHHHHHHHHHHHhhcc--CCCCchHHHHHHHHccCchhcCCchHHHHHHHHHhCCCccccHHHHHHHHHHHHHHhHhHH
Confidence 99999999999999731 2378899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCCCCcchhHHHHHHHHhhccccCCCcchhHHHHHHHHHhHhhhcccccCCCCHHHHHHHHHHH
Q 019916 252 KEASIMTRWWNDLGFPKKVPYARDRIVETYIWMLLGVSYDPNLAFGRIFASKVMCMLTIIDDTFDAYGTFEQLTHFTEAV 331 (334)
Q Consensus 252 ~EL~~lsrWwk~~~l~~~L~faRdr~ve~yfw~~~~~~~EP~~s~~R~~~tK~~~litviDD~yD~yGtleEL~~ft~av 331 (334)
+||++++|||+++||.++|||||||++|||||++ |++|||++|.+|+++||++++++++||+||+|||+|||+.||+||
T Consensus 238 ~El~~~~rWwk~~gL~~~l~~aRdr~ve~yf~~~-a~~feP~~s~~Rl~~aK~~~l~~~iDD~fD~~gt~eEl~~ft~ai 316 (542)
T cd00684 238 EELKILSRWWKDLDLASKLPFARDRLVECYFWAA-GTYFEPQYSLARIALAKTIALITVIDDTYDVYGTLEELELFTEAV 316 (542)
T ss_pred HHHHHHhHHHHhcCCcccCCcccchhHHHHHHHH-hcccCccchHHHHHHHHHHHHHhhhHhhhccCCCHHHHHHHHHHH
Confidence 9999999999999999899999999999999999 999999999999999999999999999999999999999999999
Q ss_pred hcC
Q 019916 332 TRL 334 (334)
Q Consensus 332 ~RW 334 (334)
+||
T Consensus 317 ~rw 319 (542)
T cd00684 317 ERW 319 (542)
T ss_pred Hhc
Confidence 999
No 2
>PLN02279 ent-kaur-16-ene synthase
Probab=100.00 E-value=8.2e-92 Score=742.54 Aligned_cols=263 Identities=27% Similarity=0.461 Sum_probs=247.8
Q ss_pred hhcccchhhHhHHHHHhCcccccHHHHHHHHHHhhh-cC--C---CCChhhhhHHHHhhhhcCceeecccccceecccCc
Q 019916 68 ANKLAHKLHMIDSVQRLGVAYHFEKEIEDELGKVSH-DL--D---RDDLYVVSLRFRLFRQQGVKISCDVFEKFKDDEGK 141 (334)
Q Consensus 68 ~~~~~~~L~lID~LqRLGI~~hFe~EI~~~L~~i~~-~~--~---~~dL~~~AL~FRLLRqhGy~VS~DvF~~F~d~~G~ 141 (334)
|.+.++++++||+||||||+|||++||+++|+++|+ |. . ..|+++|||+|||||||||+||||||++|+|++
T Consensus 267 p~~~fe~l~lvd~L~rlGi~~hF~~EI~~~L~~~~~~~~~~~~~~~~Dl~~tAl~FRLLR~hGy~VS~dvf~~F~~~~-- 344 (784)
T PLN02279 267 PLDQYARLSMVDTLERLGIDRHFRKEIKSVLDETYRYWLQGEEEIFLDLATCALAFRILRLNGYDVSSDPLKQFAEDH-- 344 (784)
T ss_pred cccHHHHhHHHHHHHHhCCccccHHHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHHHcCCCCChhHHhhcCCCc--
Confidence 578999999999999999999999999999999998 32 1 369999999999999999999999999999654
Q ss_pred cchhh---hhhHHHHHhHHhhhccCCCCchHHHHHHHHHHHHHHhhhhccC--CCCCCCChHHHHHHhcCCCccccchhh
Q 019916 142 FKESL---INDIRGMFSLHEAAYLAVRGEDILDEAIAFTTSHLKSIISISD--HSHVNSKLPEQIRRSLQIPLRKAAARL 216 (334)
Q Consensus 142 F~~~l---~~D~~glLsLYeAS~l~~~gE~iLdeA~~Ft~~~L~~~~~~~~--~~~~~~~L~~~V~~aL~~P~h~~~~Rl 216 (334)
|++++ .+|++||||||||||+++|||+|||||+.||++||++.++++. .+.++++|+++|+|||++|||+++|||
T Consensus 345 F~~~l~~~~~dv~gmL~LY~AS~l~~~gE~iLdeA~~Fs~~~L~~~~~~~~~~~~~~~~~L~~eV~~AL~~P~~~~l~Rl 424 (784)
T PLN02279 345 FSDSLGGYLKDTGAVLELFRASQISYPDESLLEKQNSWTSHFLEQGLSNWSKTADRLRKYIKKEVEDALNFPYYANLERL 424 (784)
T ss_pred ccchhcccchhhHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHhcccccccccCccHHHHHHHHhcCchhcCccHH
Confidence 99988 5999999999999999999999999999999999999887410 012578899999999999999999999
Q ss_pred HHHHhHHhhcCCCC------------CcHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHhCCCCCCCCcchhHHHHHHHH
Q 019916 217 EARYFLDIYSRDDL------------HDETLLKFAKLDFNILQAAHQKEASIMTRWWNDLGFPKKVPYARDRIVETYIWM 284 (334)
Q Consensus 217 ear~yI~~Y~~~~~------------~n~~lLelAKlDFn~~Q~~hq~EL~~lsrWwk~~~l~~~L~faRdr~ve~yfw~ 284 (334)
|||+||++|++++. +|+.||||||+|||+||++||+||++|+|||+++|| .+|||||||+||||||+
T Consensus 425 EaR~yI~~Y~~~~~~i~Kt~yr~~~~~n~~lLeLAklDFN~~Qs~hq~EL~~l~rWwke~~L-~~L~faRdr~ve~Yf~a 503 (784)
T PLN02279 425 ANRRSIENYAVDDTRILKTSYRCSNICNQDFLKLAVEDFNFCQSIHREELKQLERWIVENRL-DKLKFARQKLAYCYFSA 503 (784)
T ss_pred HHHHHHHHhccccchhccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHhCeeHHhcCC-ccCCchhhHHHHHHHHH
Confidence 99999999998875 899999999999999999999999999999999999 69999999999999999
Q ss_pred hhccccCCCcchhHHHHHHHHHhHhhhcccccCCCCHHHHHHHHHHHhcC
Q 019916 285 LLGVSYDPNLAFGRIFASKVMCMLTIIDDTFDAYGTFEQLTHFTEAVTRL 334 (334)
Q Consensus 285 ~~~~~~EP~~s~~R~~~tK~~~litviDD~yD~yGtleEL~~ft~av~RW 334 (334)
+ |++||||||.+|++|||+++|+|++||+||+|||+|||++||+||+||
T Consensus 504 a-a~~fEPe~S~aRi~~aK~~~L~tviDD~fD~yGt~eEL~~ft~aVeRW 552 (784)
T PLN02279 504 A-ATLFSPELSDARLSWAKNGVLTTVVDDFFDVGGSEEELENLIQLVEKW 552 (784)
T ss_pred H-HhhcCchhhHHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHh
Confidence 9 999999999999999999999999999999999999999999999999
No 3
>PLN02592 ent-copalyl diphosphate synthase
Probab=100.00 E-value=1.5e-89 Score=723.97 Aligned_cols=262 Identities=26% Similarity=0.447 Sum_probs=245.6
Q ss_pred hhcccchhhHhHHHHHhCcccccHHHHHHHHHHhhh-cC--C--------CCChhhhhHHHHhhhhcCceeeccccccee
Q 019916 68 ANKLAHKLHMIDSVQRLGVAYHFEKEIEDELGKVSH-DL--D--------RDDLYVVSLRFRLFRQQGVKISCDVFEKFK 136 (334)
Q Consensus 68 ~~~~~~~L~lID~LqRLGI~~hFe~EI~~~L~~i~~-~~--~--------~~dL~~~AL~FRLLRqhGy~VS~DvF~~F~ 136 (334)
|.+++++|++||+||||||+|||++||+++|+++|+ |. + ..|+++|||+|||||||||+||||||++|+
T Consensus 307 P~d~fE~LwlVDtLqRLGIs~hF~~EI~~iLd~iy~~w~~~g~~~a~~~~~~Dld~TALaFRLLRqhGy~VS~DvF~~F~ 386 (800)
T PLN02592 307 PVDLFEHIWAVDRLQRLGISRYFEPEIKECIDYVHRYWTENGICWARNSHVHDIDDTAMGFRLLRLHGHQVSADVFKHFE 386 (800)
T ss_pred CCcHHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHHhhcCcccccCCCcCCHHHHHHHHHHHHHcCCCCChHHHHhhc
Confidence 578999999999999999999999999999999997 21 1 269999999999999999999999999998
Q ss_pred cccCccchhh---hhhHHHHHhHHhhhccCCCCchHHHHHHHHHHHHHHhhhhcc---CCCCCCCChHHHHHHhcCCCcc
Q 019916 137 DDEGKFKESL---INDIRGMFSLHEAAYLAVRGEDILDEAIAFTTSHLKSIISIS---DHSHVNSKLPEQIRRSLQIPLR 210 (334)
Q Consensus 137 d~~G~F~~~l---~~D~~glLsLYeAS~l~~~gE~iLdeA~~Ft~~~L~~~~~~~---~~~~~~~~L~~~V~~aL~~P~h 210 (334)
+ +|+|++.+ .+|++|||+||||||++++||.|||+|+.||++||++.++.+ +++.++++|+++|+|||++|||
T Consensus 387 ~-~g~F~~~~ge~~~Dv~glL~LYeAS~l~~~gE~iLdeA~~Fs~~~L~~~~~~~~l~d~~~~~~~L~~eV~~AL~~P~~ 465 (800)
T PLN02592 387 K-GGEFFCFAGQSTQAVTGMFNLYRASQVLFPGEKILENAKEFSSKFLREKQEANELLDKWIIMKDLPGEVGFALEIPWY 465 (800)
T ss_pred C-CCCccccccccccchHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHhhccccccccccCccHHHHHHHhccChhh
Confidence 6 89998665 899999999999999999999999999999999999986421 1234577899999999999999
Q ss_pred ccchhhHHHHhHHhhcCCCCC-------------cHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHhCCCCCCCCcchhH
Q 019916 211 KAAARLEARYFLDIYSRDDLH-------------DETLLKFAKLDFNILQAAHQKEASIMTRWWNDLGFPKKVPYARDRI 277 (334)
Q Consensus 211 ~~~~Rlear~yI~~Y~~~~~~-------------n~~lLelAKlDFn~~Q~~hq~EL~~lsrWwk~~~l~~~L~faRdr~ 277 (334)
+++||||||+||++|++++++ |+.||||||+|||+||++||+||++|+||||++||. +|||||||+
T Consensus 466 ~~l~RlEaR~yI~~Y~~~~~~~i~Kt~yr~~~~~n~~lLeLAklDFn~~Qs~hq~EL~~lsrWwke~~L~-~L~faRdr~ 544 (800)
T PLN02592 466 ASLPRVETRFYIEQYGGEDDVWIGKTLYRMPYVNNNEYLELAKLDYNNCQALHQLEWDNFQKWYEECNLG-EFGVSRSEL 544 (800)
T ss_pred cCcchHHHHHHHHHhcCCcccchhhhhccccccCCHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHhcCCC-cCCcchhHH
Confidence 999999999999999987764 999999999999999999999999999999999995 999999999
Q ss_pred HHHHHHHhhccccCCCcchhHHHHHHHHHhHhhhcccccCCCCHHHHHHHHHHHh
Q 019916 278 VETYIWMLLGVSYDPNLAFGRIFASKVMCMLTIIDDTFDAYGTFEQLTHFTEAVT 332 (334)
Q Consensus 278 ve~yfw~~~~~~~EP~~s~~R~~~tK~~~litviDD~yD~yGtleEL~~ft~av~ 332 (334)
||||||++ |++||||||.+|++|||+++|+|+|||+||+|||+|||++||+||+
T Consensus 545 ve~Yfwa~-~~~feP~~s~~Ri~~aK~~~LitviDD~fD~yGt~eEl~~ft~~v~ 598 (800)
T PLN02592 545 LLAYFLAA-ASIFEPERSHERLAWAKTTVLVEAISSYFNKETSSKQRRAFLHEFG 598 (800)
T ss_pred HHHHHHHH-HhhcCccchHHHHHHHHHHHHHHhhcccccCCCCHHHHHHHHHHHH
Confidence 99999999 9999999999999999999999999999999999999999999997
No 4
>PF01397 Terpene_synth: Terpene synthase, N-terminal domain; InterPro: IPR001906 Sequences containing this domain belong to the terpene synthase family. It has been suggested that this gene family be designated tps (for terpene synthase). Sequence comparisons reveal similarities between the monoterpene (C10) synthases, sesquiterpene (C15) synthases and the diterpene (C20) synthases. It has been split into six subgroups on the basis of phylogeny, called Tpsa-Tpsf []. Tpsa includes vetispiridiene synthase Q39979 from SWISSPROT, 5-epi- aristolochene synthase, Q40577 from SWISSPROT and (+)-delta-cadinene synthase P93665 from SWISSPROT . Tpsb includes (-)-limonene synthase, Q40322 from SWISSPROT. Tpsc includes copalyl diphosphate synthase (kaurene synthase A), O04408 from SWISSPROT. Tpsd includes taxadiene synthase, Q41594 from SWISSPROT, pinene synthase, O24475 from SWISSPROT and myrcene synthase, O24474 from SWISSPROT. Tpse includes ent-kaurene synthase B Q39548 from SWISSPROT. Tpsf includes linalool synthase Q9ZPN5 from SWISSPROT. In the fungus Phaeosphaeria sp. (strain L487) the synthesis of ent-kaurene from geranylgeranyl dophosphate is promoted by a single bifunctional protein [].; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 2ONH_A 2ONG_B 3P5R_A 3P5P_A 3N0F_A 3N0G_B 3PYB_A 3PYA_A 3G4F_A 3G4D_B ....
Probab=100.00 E-value=7.7e-59 Score=418.40 Aligned_cols=172 Identities=47% Similarity=0.781 Sum_probs=146.1
Q ss_pred ccccccc-----cCCchhhcchHHHHHHHHHHHHHHHHHhhchhcccchhhHhHHHHHhCcccccHHHHHHHHHHhhh-c
Q 019916 31 WGTHFLK-----SAADVETIDDATQEQHAALKQEVRRMITTTANKLAHKLHMIDSVQRLGVAYHFEKEIEDELGKVSH-D 104 (334)
Q Consensus 31 W~d~fl~-----~~~~~~~~~~~~~~~~e~Lk~eVr~ml~~~~~~~~~~L~lID~LqRLGI~~hFe~EI~~~L~~i~~-~ 104 (334)
|||+||+ +++......+.+.+++++||++||+||.....+++++|+|||+||||||+|||++||+++|+++|+ +
T Consensus 1 W~d~fl~s~s~~~~~~~~~~~~~~~~~~~~Lk~~v~~~l~~~~~d~~~~L~lID~lqRLGi~yhFe~EI~~~L~~i~~~~ 80 (183)
T PF01397_consen 1 WGDDFLQSLSPSYTACMQSEDEKCKERAEELKEEVRNMLPASYPDPLEKLELIDTLQRLGISYHFEDEIKEILDSIYRSW 80 (183)
T ss_dssp TTHHHHHHTBHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHSSSSHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHHTT
T ss_pred CCCceecCCCCcchhccchhHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhhhc
Confidence 9999994 222212345789999999999999999874458999999999999999999999999999999998 3
Q ss_pred CC----CCChhhhhHHHHhhhhcCceeecccccceecccCccchhhhhhHHHHHhHHhhhccCCCCchHHHHHHHHHHHH
Q 019916 105 LD----RDDLYVVSLRFRLFRQQGVKISCDVFEKFKDDEGKFKESLINDIRGMFSLHEAAYLAVRGEDILDEAIAFTTSH 180 (334)
Q Consensus 105 ~~----~~dL~~~AL~FRLLRqhGy~VS~DvF~~F~d~~G~F~~~l~~D~~glLsLYeAS~l~~~gE~iLdeA~~Ft~~~ 180 (334)
.. ..||++|||+|||||||||+||||||++|+|++|+|++++++|++|||||||||||+++||+|||||+.||++|
T Consensus 81 ~~~~~~~~dL~~~AL~FRLLRqhGy~VS~DvF~~F~d~~g~F~~~l~~Dv~glLsLYeAS~l~~~gE~iLdeA~~Ft~~~ 160 (183)
T PF01397_consen 81 DEDNEEIDDLYTTALRFRLLRQHGYYVSSDVFNKFKDEKGNFKESLSNDVKGLLSLYEASHLRFHGEDILDEARAFTTKH 160 (183)
T ss_dssp TTTSHTSSCHHHHHHHHHHHHHTT----GGGGGGGBETTSSBSGGGGGHHHHHHHHHHHHTT--TT-HHHHHHHHHHHHH
T ss_pred cccccccCchhHHHHHHHHHHHcCCcccHHHHhCcccCCCccchhhhHhHHHHHHHHHHHHccCCChHHHHHHHHHHHHH
Confidence 22 24999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhccCCCCC-CCChHHHHHHhc
Q 019916 181 LKSIISISDHSHV-NSKLPEQIRRSL 205 (334)
Q Consensus 181 L~~~~~~~~~~~~-~~~L~~~V~~aL 205 (334)
|++++++. .. +++|+++|+|||
T Consensus 161 L~~~~~~~---~~~~~~L~~~V~~AL 183 (183)
T PF01397_consen 161 LKSLLSNL---SIPDPHLAKEVKHAL 183 (183)
T ss_dssp HHHHHTTT---CTTSCHHHHHHHHHH
T ss_pred HHHHhccC---CCCcHHHHHHHHHhC
Confidence 99999841 22 235999999997
No 5
>PF03936 Terpene_synth_C: Terpene synthase family, metal binding domain; InterPro: IPR005630 Sequences containing this domain belong to the terpene synthase family. It has been suggested that this gene family be designated tps (for terpene synthase). Sequence comparisons reveal similarities between the monoterpene (C10) synthases, sesquiterpene (C15) synthases and the diterpene (C20) synthases. It has been split into six subgroups on the basis of phylogeny, called Tpsa-Tpsf []. Tpsa includes vetispiridiene synthase Q39979 from SWISSPROT, 5-epi- aristolochene synthase, Q40577 from SWISSPROT and (+)-delta-cadinene synthase P93665 from SWISSPROT . Tpsb includes (-)-limonene synthase, Q40322 from SWISSPROT. Tpsc includes copalyl diphosphate synthase (kaurene synthase A), O04408 from SWISSPROT. Tpsd includes taxadiene synthase, Q41594 from SWISSPROT, pinene synthase, O24475 from SWISSPROT and myrcene synthase, O24474 from SWISSPROT. Tpse includes ent-kaurene synthase B Q39548 from SWISSPROT. Tpsf includes linalool synthase Q9ZPN5 from SWISSPROT. In the fungus Phaeosphaeria sp. (strain L487) the synthesis of ent-kaurene from geranylgeranyl dophosphate is promoted by a single bifunctional protein [].; GO: 0000287 magnesium ion binding, 0016829 lyase activity; PDB: 3PYB_A 3PYA_A 3G4F_A 3G4D_B 3CKE_A 2OA6_D 2E4O_B 3BNY_B 3BNX_A 3LG5_A ....
Probab=99.75 E-value=9.4e-19 Score=161.85 Aligned_cols=99 Identities=34% Similarity=0.488 Sum_probs=95.6
Q ss_pred HHHHHHHhhHHHHHhhHHHHHHHHHHHHHhCCCCCCCCcchhHHHHHHHHhhccccCCCcchhHHHHHHHHHhHhhhccc
Q 019916 235 LLKFAKLDFNILQAAHQKEASIMTRWWNDLGFPKKVPYARDRIVETYIWMLLGVSYDPNLAFGRIFASKVMCMLTIIDDT 314 (334)
Q Consensus 235 lLelAKlDFn~~Q~~hq~EL~~lsrWwk~~~l~~~L~faRdr~ve~yfw~~~~~~~EP~~s~~R~~~tK~~~litviDD~ 314 (334)
+|+|||+|||+||+.||+|++++++||+++|+..+.+.+|+|++.++||.+ +.++.|..+..|+.+||.++++.++||+
T Consensus 1 ~~~la~~~~~~~~~~~~~e~~~~~~W~~~~~l~~~~~~~~~~~~~~~~~~~-aa~~~P~~~~~l~~~a~~~~w~f~~DD~ 79 (270)
T PF03936_consen 1 YLELAKRDFPHCQALHQQELEEIDRWVKEFGLFDEDKAARQRFRQAYFGLL-AARFYPDSSDELLAAADWMAWLFIFDDF 79 (270)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTHHHHHTTSHHHHHHHHHHHH-HHHHSGCGHHHHHHHHHHHHHHHHHHHH
T ss_pred CcccchhhcHhhHHHHHHHHHHHHHHHHHcCCccccccchhhhhHhHHhhh-hheeCCCcHHHHHHHHhhchheeeeeec
Confidence 689999999999999999999999999999997788889999999999999 9999999888999999999999999999
Q ss_pred ccCCCCHHHHHHHHHHHhcC
Q 019916 315 FDAYGTFEQLTHFTEAVTRL 334 (334)
Q Consensus 315 yD~yGtleEL~~ft~av~RW 334 (334)
||..|+.++++.|+++++||
T Consensus 80 ~D~~~~~~~~~~l~~~~~~~ 99 (270)
T PF03936_consen 80 FDDGGSAEELEALTDAVERW 99 (270)
T ss_dssp HHTTSHHHHHHHHHHHHHHT
T ss_pred cccccchHHHHHHHHHHhcc
Confidence 99999999999999999987
No 6
>cd00868 Terpene_cyclase_C1 Terpene cyclases, Class 1. Terpene cyclases, Class 1 (C1) of the class 1 family of isoprenoid biosynthesis enzymes, which share the 'isoprenoid synthase fold' and convert linear, all-trans, isoprenoids, geranyl (C10)-, farnesyl (C15)-, or geranylgeranyl (C20)-diphosphate into numerous cyclic forms of monoterpenes, diterpenes, and sesquiterpenes. Also included in this CD are the cis-trans terpene cyclases such as trichodiene synthase. The class I terpene cyclization reactions proceed via electrophilic alkylations in which a new carbon-carbon single bond is generated through interaction between a highly reactive electron-deficient allylic carbocation and an electron-rich carbon-carbon double bond. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions located on opposite walls. These residues mediate binding of prenyl phosphates via bridging Mg2+ ions, inducing proposed conformational ch
Probab=99.50 E-value=4.9e-14 Score=131.29 Aligned_cols=85 Identities=48% Similarity=0.958 Sum_probs=81.8
Q ss_pred hhHHHHHHHHHHHHHhCCCCCCCCcchhHHHHHHHHhhccccCCCcchhHHHHHHHHHhHhhhcccccCCCCHHHHHHHH
Q 019916 249 AHQKEASIMTRWWNDLGFPKKVPYARDRIVETYIWMLLGVSYDPNLAFGRIFASKVMCMLTIIDDTFDAYGTFEQLTHFT 328 (334)
Q Consensus 249 ~hq~EL~~lsrWwk~~~l~~~L~faRdr~ve~yfw~~~~~~~EP~~s~~R~~~tK~~~litviDD~yD~yGtleEL~~ft 328 (334)
.||+|++++++||+++||....+++|.+..++|+|++ +++|+|+.+..|+++||.++++.++||.||.+|+.+|+..|+
T Consensus 1 ~~~~e~~~~~~W~~~~~l~~~~~~~r~~~~~~~~~~a-~~~p~~~~~~~l~~~a~~~~~~f~~DD~~D~~~~~~~~~~~~ 79 (284)
T cd00868 1 LHQEELKELSRWWKELGLQEKLPFARDRLVECYFWAA-GSYFEPQYSEARIALAKTIALLTVIDDTYDDYGTLEELELFT 79 (284)
T ss_pred CCHHHHHHHHHHHHHhCCcccCCchhhHhHHHHHHHH-HhhcCccchHHHHHHHHHHHHHHHHHhccccCCCHHHHHHHH
Confidence 4899999999999999997766699999999999999 999999999999999999999999999999999999999999
Q ss_pred HHHhcC
Q 019916 329 EAVTRL 334 (334)
Q Consensus 329 ~av~RW 334 (334)
++++||
T Consensus 80 ~~~~~~ 85 (284)
T cd00868 80 EAVERW 85 (284)
T ss_pred HHHHhc
Confidence 999987
No 7
>cd00687 Terpene_cyclase_nonplant_C1 Non-plant Terpene Cyclases, Class 1. This CD includes terpenoid cyclases such as pentalenene synthase and aristolochene synthase which, using an all-trans pathway, catalyze the ionization of farnesyl diphosphate, followed by the formation of a macrocyclic intermediate by bond formation between C1 with either C10 (aristolochene synthase) or C11 (pentalenene synthase), resulting in production of tricyclic hydrocarbon pentalenene or bicyclic hydrocarbon aristolochene. As with other enzymes with the 'terpenoid synthase fold', they have two conserved metal binding motifs, proposed to coordinate Mg2+ ion-bridged binding of the diphosphate moiety of FPP to the enzymes. Metal-triggered substrate ionization initiates catalysis, and the alpha-barrel active site serves as a template to channel and stabilize the conformations of reactive carbocation intermediates through a complex cyclization cascade. These enzymes function in the monomeric form and are found in
Probab=97.63 E-value=0.00012 Score=69.78 Aligned_cols=77 Identities=16% Similarity=0.142 Sum_probs=66.1
Q ss_pred HHHHHHHHhCCCCCCCCcchhHHHHHHHHhhccccCCCcchhHHHHH-HHHHhHhhhcccccCC-CCHHHHHHHHHHHhc
Q 019916 256 IMTRWWNDLGFPKKVPYARDRIVETYIWMLLGVSYDPNLAFGRIFAS-KVMCMLTIIDDTFDAY-GTFEQLTHFTEAVTR 333 (334)
Q Consensus 256 ~lsrWwk~~~l~~~L~faRdr~ve~yfw~~~~~~~EP~~s~~R~~~t-K~~~litviDD~yD~y-GtleEL~~ft~av~R 333 (334)
+...|.++.|+. .-+.+|++.++++|+.+ +.++.|+.+..|+.++ +.++++.++||.||.. ++++++..+++.+.+
T Consensus 18 ~~~~w~~~~~l~-~~~~~~~~~~~~~~~~~-~a~~~P~a~~~~l~l~~~~~~w~f~~DD~~D~~~~~~~~~~~~~~~~~~ 95 (303)
T cd00687 18 EYLEWVLEEMLI-PSEKAEKRFLSADFGDL-AALFYPDADDERLMLAADLMAWLFVFDDLLDRDQKSPEDGEAGVTRLLD 95 (303)
T ss_pred HHHHHHHHcCCC-CcchhHHHHhcCCHHHH-HhhcCCCCCHHHHHHHHHHHHHHHHhcccCCccccCHHHHHHHHHHHHh
Confidence 467788888663 33479999999999999 9999999999999665 9999999999999998 499999999887765
Q ss_pred C
Q 019916 334 L 334 (334)
Q Consensus 334 W 334 (334)
|
T Consensus 96 ~ 96 (303)
T cd00687 96 I 96 (303)
T ss_pred c
Confidence 4
No 8
>cd07604 BAR_ASAPs The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of ASAPs (ArfGAP with SH3 domain, ANK repeat and PH domain containing proteins), which are Arf GTPase activating proteins (GAPs) with similarity to ACAPs (ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins) in that they contain an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and ankyrin (ANK) repeats. However, ASAPs contain an additional C-terminal SH3 domain. ASAPs function in regulating cell growth, migration, and invasion. Vertebrates contain at least three members, ASAP1, ASAP2, and ASAP3. ASAP1 and ASAP2 shows GTPase activating protein (GAP) activity towards Arf1 and Arf5. They do not show GAP activity towards Arf6, but is able to mediate
Probab=35.76 E-value=39 Score=31.60 Aligned_cols=87 Identities=14% Similarity=0.133 Sum_probs=59.8
Q ss_pred chHHHHHHHHHHHHHHHHHhhchhc-ccchhhHhHHHHHhCcccc--cHHHHHHHHHHhhhcCCCCChhhhhHHHHhhhh
Q 019916 46 DDATQEQHAALKQEVRRMITTTANK-LAHKLHMIDSVQRLGVAYH--FEKEIEDELGKVSHDLDRDDLYVVSLRFRLFRQ 122 (334)
Q Consensus 46 ~~~~~~~~e~Lk~eVr~ml~~~~~~-~~~~L~lID~LqRLGI~~h--Fe~EI~~~L~~i~~~~~~~dL~~~AL~FRLLRq 122 (334)
.+..+.+.++++.-+|.|..+ ..+ .-....++++|+.||=..- -+.+|..+|...- .-+..++=.+-.|++
T Consensus 11 l~~~~~~l~Kl~K~~k~~~~~-g~~~~~~~~~F~~aL~~~g~~~~~~~~~~i~~~l~kF~-----~~l~El~~~~~~L~~ 84 (215)
T cd07604 11 LEGDRVGLQKLKKAVKAIHNS-GLAHVENELQFAEALEKLGSKALSREEEDLGAAFLKFS-----VFTKELAALFKNLMQ 84 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHHhccccCcccHHHHHHHHHHH-----HHHHHHHHHHHHHHH
Confidence 355678889999999999875 444 5568999999999993222 2335888876542 224455556677787
Q ss_pred cCceeecccccceecc
Q 019916 123 QGVKISCDVFEKFKDD 138 (334)
Q Consensus 123 hGy~VS~DvF~~F~d~ 138 (334)
|=-++-...+.+|..+
T Consensus 85 ~~~~~i~~pL~~f~k~ 100 (215)
T cd07604 85 NLNNIIMFPLDSLLKG 100 (215)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7767767777777644
No 9
>PRK09177 xanthine-guanine phosphoribosyltransferase; Validated
Probab=34.22 E-value=11 Score=33.08 Aligned_cols=23 Identities=22% Similarity=0.307 Sum_probs=18.8
Q ss_pred hHhhhcccccCCCCHHHHHHHHH
Q 019916 307 MLTIIDDTFDAYGTFEQLTHFTE 329 (334)
Q Consensus 307 litviDD~yD~yGtleEL~~ft~ 329 (334)
=+.++||+.|..+|+.++.....
T Consensus 86 ~VLIVDDIiDTG~Tl~~v~~~l~ 108 (156)
T PRK09177 86 GFLVVDDLVDTGGTARAVREMYP 108 (156)
T ss_pred EEEEEeeeeCCHHHHHHHHHHHh
Confidence 35688999999999999876643
No 10
>KOG3951 consensus Uncharacterized conserved protein [Function unknown]
Probab=33.79 E-value=60 Score=31.66 Aligned_cols=57 Identities=28% Similarity=0.409 Sum_probs=40.3
Q ss_pred cccCccchhhhhhHHHHHhHHhhhccCCCCchHHHHHHHHHHHHHHhhhhccCCCCCCCChHHHHHHhcC
Q 019916 137 DDEGKFKESLINDIRGMFSLHEAAYLAVRGEDILDEAIAFTTSHLKSIISISDHSHVNSKLPEQIRRSLQ 206 (334)
Q Consensus 137 d~~G~F~~~l~~D~~glLsLYeAS~l~~~gE~iLdeA~~Ft~~~L~~~~~~~~~~~~~~~L~~~V~~aL~ 206 (334)
+.+|-|...-+-|+||-..|-.+-- .. .-+.|=.|+.||++||.. .+-+++|++-|+
T Consensus 264 hp~GAFv~~s~iDmkgcvrllk~q~-p~-~~e~LLnaLRfTTKHlNd-----------esTpK~ir~ll~ 320 (321)
T KOG3951|consen 264 HPNGAFVSNSSIDMKGCVRLLKLQP-PE-QSECLLNALRFTTKHLND-----------ESTPKSIRHLLE 320 (321)
T ss_pred cccccccccCcCcHHHHHHHHHcCC-ch-hhHHHHHHHHHHHhhcCC-----------CCChHHHHHHhc
Confidence 5778888888889999999988743 22 223567899999999852 234566666553
No 11
>PF00156 Pribosyltran: Phosphoribosyl transferase domain; InterPro: IPR000836 The name PRT comes from phosphoribosyltransferase (PRTase) enzymes, which carry out phosphoryl transfer reactions on 5-phosphoribosyl-alpha1-pyrophosphate PRPP, an activated form of ribose-5-phosphate. Members of Phosphoribosyltransferase (PRT) are catalytic and are regulatory proteins involved in nucleotide synthesis and salvage []. This includes a range of diverse phosphoribosyl transferase enzymes including adenine phosphoribosyltransferase (2.4.2.7 from EC); hypoxanthine-guanine-xanthine phosphoribosyltransferase; hypoxanthine phosphoribosyltransferase (2.4.2.8 from EC); ribose-phosphate pyrophosphokinase (2.7.6.1 from EC); amidophosphoribosyltransferase (2.4.2.14 from EC); orotate phosphoribosyltransferase (2.4.2.10 from EC);uracil phosphoribosyltransferase (2.4.2.9 from EC); and xanthine-guanine phosphoribosyltransferase (2.4.2.22 from EC). Not all PRT proteins are enzymes. For example, in some bacteria PRT proteins regulate the expression of purine and pyrimidine synthetic genes. Members of PRT are defined by the protein fold and by a short 13-residue sequence motif, The motif consists of four hydrophobic amino acids, two acidic amino acids and seven amino acids of variable character, usually including glycine and threonine. The motif has been predicted to be a PRPP-binding site in advance of structural information [, ]. Apart of this motif, different PRT proteins have a low level of sequence identity, less than 15%. The PRT sequence motif is only found in PRTases from the nucleotide synthesis and salvage pathways. Other PRTases, from the tryptophan, histidine and nicotinamide synthetic and salvage pathways, lack the PRT sequence motif and appear to be unrelated to each other and unrelated to the PRT family.; GO: 0009116 nucleoside metabolic process; PDB: 2JBH_A 1Y0B_D 2FXV_B 1GPH_1 1AO0_D 1ORO_B 1VCH_C 2WNS_A 2PRZ_B 2PS1_A ....
Probab=31.46 E-value=15 Score=29.72 Aligned_cols=20 Identities=30% Similarity=0.566 Sum_probs=12.9
Q ss_pred HhhhcccccCCCCHHHHHHH
Q 019916 308 LTIIDDTFDAYGTFEQLTHF 327 (334)
Q Consensus 308 itviDD~yD~yGtleEL~~f 327 (334)
+.++||++|..+|+.++..+
T Consensus 91 vliVDDvi~tG~Tl~~~~~~ 110 (125)
T PF00156_consen 91 VLIVDDVIDTGGTLKEAIEL 110 (125)
T ss_dssp EEEEEEEESSSHHHHHHHHH
T ss_pred EEEEeeeEcccHHHHHHHHH
Confidence 34667777777777666544
No 12
>COG1580 FliL Flagellar basal body-associated protein [Cell motility and secretion]
Probab=27.14 E-value=87 Score=28.06 Aligned_cols=85 Identities=20% Similarity=0.264 Sum_probs=51.4
Q ss_pred CCCCCCCccccccccCCchhhcchHHHHHHHHHHHHHHHHHhhc-hhcccchhhHhHHHHHhCcccccHHHHHHHHHHhh
Q 019916 24 ADFHPTLWGTHFLKSAADVETIDDATQEQHAALKQEVRRMITTT-ANKLAHKLHMIDSVQRLGVAYHFEKEIEDELGKVS 102 (334)
Q Consensus 24 a~~~psiW~d~fl~~~~~~~~~~~~~~~~~e~Lk~eVr~ml~~~-~~~~~~~L~lID~LqRLGI~~hFe~EI~~~L~~i~ 102 (334)
.|+.+. -++.+++..-......+....++++-+.+||..+... .....+.|....-.++| +.||++.|+.+.
T Consensus 70 ~Nl~~~-~~~~~v~i~i~l~~~n~~~~~el~~~~p~vrd~li~lfsskt~~eL~t~~Gke~L------k~ei~~~in~~L 142 (159)
T COG1580 70 TNLLDG-PKDRYVKIAITLEVANKALLEELEEKKPEVRDALLMLFSSKTAAELSTPEGKEKL------KAEIKDRINTIL 142 (159)
T ss_pred eecccC-CCcEEEEEEEEEeeCCHHHHHHHHHhhHHHHHHHHHHHHhCCHHHhcCchhHHHH------HHHHHHHHHHHH
Confidence 444333 5677776432332334566778888888888755431 23344556665555555 689999999887
Q ss_pred hcC-CCCChhhhhH
Q 019916 103 HDL-DRDDLYVVSL 115 (334)
Q Consensus 103 ~~~-~~~dL~~~AL 115 (334)
..+ ...|++.|..
T Consensus 143 ~~g~~V~dV~fT~f 156 (159)
T COG1580 143 KEGQVVKDVLFTNF 156 (159)
T ss_pred hcCCeeEEEeeehh
Confidence 754 4456666654
No 13
>TIGR00201 comF comF family protein. This protein is found in species that do (Bacillus subtilis, Haemophilus influenzae) or do not (E. coli, Borrelia burgdorferi) have described systems for natural transformation with exogenous DNA. It is involved in competence for transformation in Bacillus subtilis.
Probab=24.69 E-value=19 Score=32.39 Aligned_cols=20 Identities=15% Similarity=0.466 Sum_probs=17.3
Q ss_pred HhhhcccccCCCCHHHHHHH
Q 019916 308 LTIIDDTFDAYGTFEQLTHF 327 (334)
Q Consensus 308 itviDD~yD~yGtleEL~~f 327 (334)
|.++||+|.+..|+.|+...
T Consensus 155 vllvDDV~TTGaTl~~~~~~ 174 (190)
T TIGR00201 155 IVLVDDVVTTGATLHEIARL 174 (190)
T ss_pred EEEEeeeeccHHHHHHHHHH
Confidence 56799999999999998654
No 14
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=24.60 E-value=5.5e+02 Score=24.87 Aligned_cols=145 Identities=18% Similarity=0.187 Sum_probs=88.6
Q ss_pred HHHHHHHHHHhhchhcccchhhHhHHHHHhCcccccHHHHHHHHHHhhhcCCCCChhhhhHHHHhhhhcCceeecccccc
Q 019916 55 ALKQEVRRMITTTANKLAHKLHMIDSVQRLGVAYHFEKEIEDELGKVSHDLDRDDLYVVSLRFRLFRQQGVKISCDVFEK 134 (334)
Q Consensus 55 ~Lk~eVr~ml~~~~~~~~~~L~lID~LqRLGI~~hFe~EI~~~L~~i~~~~~~~dL~~~AL~FRLLRqhGy~VS~DvF~~ 134 (334)
.-|..+++.|...++.....+-+--.-|++|---+=.++-..+|.---+ +-||+|+
T Consensus 53 ~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~------------------------~GdVLNN 108 (250)
T COG3063 53 QAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN------------------------NGDVLNN 108 (250)
T ss_pred HHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC------------------------ccchhhh
Confidence 3455666777766777778888888888888766666666666543321 2368888
Q ss_pred eecccCccchhhhhhHHHHHhHHhhhccCCCCch--HHHHHHHHH---------HHHHHhhhhccCCCCCCCChHHHHHH
Q 019916 135 FKDDEGKFKESLINDIRGMFSLHEAAYLAVRGED--ILDEAIAFT---------TSHLKSIISISDHSHVNSKLPEQIRR 203 (334)
Q Consensus 135 F~d~~G~F~~~l~~D~~glLsLYeAS~l~~~gE~--iLdeA~~Ft---------~~~L~~~~~~~~~~~~~~~L~~~V~~ 203 (334)
| |.|-|+...=..+|--+=+|..--.-||. .++.+.-++ +.+|+..+... .+.++.+.+
T Consensus 109 Y----G~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d--p~~~~~~l~---- 178 (250)
T COG3063 109 Y----GAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD--PQFPPALLE---- 178 (250)
T ss_pred h----hHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC--cCCChHHHH----
Confidence 7 77877777767777777777755554443 344444333 35566555420 011222222
Q ss_pred hcCCCccccchhhHHHHhHHhhcCCCCCcHH
Q 019916 204 SLQIPLRKAAARLEARYFLDIYSRDDLHDET 234 (334)
Q Consensus 204 aL~~P~h~~~~Rlear~yI~~Y~~~~~~n~~ 234 (334)
+-.+....=.+.+||.|++.|.+...-+..
T Consensus 179 -~a~~~~~~~~y~~Ar~~~~~~~~~~~~~A~ 208 (250)
T COG3063 179 -LARLHYKAGDYAPARLYLERYQQRGGAQAE 208 (250)
T ss_pred -HHHHHHhcccchHHHHHHHHHHhcccccHH
Confidence 222334445667999999999987665543
No 15
>COG2236 Predicted phosphoribosyltransferases [General function prediction only]
Probab=24.20 E-value=33 Score=31.70 Aligned_cols=23 Identities=26% Similarity=0.248 Sum_probs=19.1
Q ss_pred HhhhcccccCCCCHHHHHHHHHH
Q 019916 308 LTIIDDTFDAYGTFEQLTHFTEA 330 (334)
Q Consensus 308 itviDD~yD~yGtleEL~~ft~a 330 (334)
+.|+||+.|+..|++....+.+.
T Consensus 90 VLIVDDI~DTG~Tl~~a~~~l~~ 112 (192)
T COG2236 90 VLIVDDIVDTGETLELALEELKK 112 (192)
T ss_pred EEEEecccCchHhHHHHHHHHHh
Confidence 46899999999999988776654
No 16
>PRK11595 DNA utilization protein GntX; Provisional
Probab=23.89 E-value=19 Score=33.36 Aligned_cols=21 Identities=19% Similarity=0.423 Sum_probs=17.8
Q ss_pred HhhhcccccCCCCHHHHHHHH
Q 019916 308 LTIIDDTFDAYGTFEQLTHFT 328 (334)
Q Consensus 308 itviDD~yD~yGtleEL~~ft 328 (334)
+.+|||++|+.+|+.++....
T Consensus 190 vllvDDv~tTG~Tl~~~~~~L 210 (227)
T PRK11595 190 MAIVDDVVTTGSTVAEIAQLL 210 (227)
T ss_pred EEEEeeeecchHHHHHHHHHH
Confidence 678999999999999986543
No 17
>COG1040 ComFC Predicted amidophosphoribosyltransferases [General function prediction only]
Probab=22.65 E-value=32 Score=32.18 Aligned_cols=22 Identities=14% Similarity=0.403 Sum_probs=18.3
Q ss_pred HhhhcccccCCCCHHHHHHHHH
Q 019916 308 LTIIDDTFDAYGTFEQLTHFTE 329 (334)
Q Consensus 308 itviDD~yD~yGtleEL~~ft~ 329 (334)
|.+|||+|.++.|+.|+.....
T Consensus 187 vlLvDDV~TTGaTl~~~~~~L~ 208 (225)
T COG1040 187 VLLVDDVYTTGATLKEAAKLLR 208 (225)
T ss_pred EEEEecccccHHHHHHHHHHHH
Confidence 5679999999999999876543
No 18
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=21.95 E-value=30 Score=24.53 Aligned_cols=18 Identities=28% Similarity=0.432 Sum_probs=14.2
Q ss_pred hhhhcCceeeccccccee
Q 019916 119 LFRQQGVKISCDVFEKFK 136 (334)
Q Consensus 119 LLRqhGy~VS~DvF~~F~ 136 (334)
-|+++|+++|+++++.+.
T Consensus 27 ~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 27 RLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HHHHcCcccCHHHHHHHH
Confidence 347789999999887764
No 19
>PF12626 PolyA_pol_arg_C: Polymerase A arginine-rich C-terminus; PDB: 3AQN_A 3AQK_A 3AQM_B 3AQL_B.
Probab=21.05 E-value=1.3e+02 Score=25.85 Aligned_cols=28 Identities=32% Similarity=0.657 Sum_probs=23.6
Q ss_pred HHHhhHHHHHhhHHHHHHHHHHHHHhCC
Q 019916 239 AKLDFNILQAAHQKEASIMTRWWNDLGF 266 (334)
Q Consensus 239 AKlDFn~~Q~~hq~EL~~lsrWwk~~~l 266 (334)
|-.||=.|.+.--+++.+|..||.+.--
T Consensus 65 AAyDFL~LR~~~ge~~~~l~~WW~~fq~ 92 (124)
T PF12626_consen 65 AAYDFLLLRAEAGEELSELAEWWTEFQE 92 (124)
T ss_dssp HHHHHHHHHHHH-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHh
Confidence 6679988888889999999999999764
No 20
>PF14164 YqzH: YqzH-like protein
Probab=20.69 E-value=52 Score=25.37 Aligned_cols=20 Identities=20% Similarity=0.333 Sum_probs=16.2
Q ss_pred HHHhhhhcCceeecccccce
Q 019916 116 RFRLFRQQGVKISCDVFEKF 135 (334)
Q Consensus 116 ~FRLLRqhGy~VS~DvF~~F 135 (334)
.=+-|||+||++.++.+...
T Consensus 10 i~~~l~QYg~d~~~~pls~~ 29 (64)
T PF14164_consen 10 IINCLRQYGYDVECMPLSDE 29 (64)
T ss_pred HHHHHHHhCCcccCCCCCHH
Confidence 34679999999999987764
No 21
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=20.65 E-value=2.1e+02 Score=25.67 Aligned_cols=53 Identities=17% Similarity=0.222 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHhhchhcccchhhHhHHHHHhCccccc----HHHHHHHHHHhh
Q 019916 48 ATQEQHAALKQEVRRMITTTANKLAHKLHMIDSVQRLGVAYHF----EKEIEDELGKVS 102 (334)
Q Consensus 48 ~~~~~~e~Lk~eVr~ml~~~~~~~~~~L~lID~LqRLGI~~hF----e~EI~~~L~~i~ 102 (334)
...++.+++|.+|...+.. .|-+++...--...-.-+|.+| ++||+++-+...
T Consensus 31 ~l~~EL~evk~~v~~~I~e--vD~Le~~er~aR~rL~eVS~~f~~ysE~dik~AYe~A~ 87 (159)
T PF05384_consen 31 RLRKELEEVKEEVSEVIEE--VDKLEKRERQARQRLAEVSRNFDRYSEEDIKEAYEEAH 87 (159)
T ss_pred HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhhhcccCHHHHHHHHHHHH
Confidence 4456677777777766654 2333333333333333457777 899999877664
No 22
>COG1725 Predicted transcriptional regulators [Transcription]
Probab=20.06 E-value=2.2e+02 Score=24.59 Aligned_cols=66 Identities=17% Similarity=0.252 Sum_probs=40.2
Q ss_pred ChhhhhHHHHhhhhcCceeecccccceecccCc--c----chhhhhhHHHHHhHHhhhccCCCCchHHHHHHHH
Q 019916 109 DLYVVSLRFRLFRQQGVKISCDVFEKFKDDEGK--F----KESLINDIRGMFSLHEAAYLAVRGEDILDEAIAF 176 (334)
Q Consensus 109 dL~~~AL~FRLLRqhGy~VS~DvF~~F~d~~G~--F----~~~l~~D~~glLsLYeAS~l~~~gE~iLdeA~~F 176 (334)
+.+|++=+|+.|.+.||=-+---...|.-++|. + ..-....++.. +.+|..+++.-|+|++=...+
T Consensus 48 NpnTv~raY~eLE~eG~i~t~rg~G~fV~~~~~~~~~~~~~~~~~~~l~~~--I~~~~~~G~s~eei~~~~~~~ 119 (125)
T COG1725 48 NPNTVQRAYQELEREGIVETKRGKGTFVTEDAKEILDQLKRELAEEELEEF--IEEAKALGLSLEEILELLKEI 119 (125)
T ss_pred CHHHHHHHHHHHHHCCCEEEecCeeEEEcCCchhhHHHHHHHHHHHHHHHH--HHHHHHcCCCHHHHHHHHHHH
Confidence 788999999999999987666555555444332 1 11112222222 567777888777766554443
No 23
>PRK05205 bifunctional pyrimidine regulatory protein PyrR uracil phosphoribosyltransferase; Provisional
Probab=20.06 E-value=36 Score=30.25 Aligned_cols=21 Identities=14% Similarity=0.150 Sum_probs=17.8
Q ss_pred HhhhcccccCCCCHHHHHHHH
Q 019916 308 LTIIDDTFDAYGTFEQLTHFT 328 (334)
Q Consensus 308 itviDD~yD~yGtleEL~~ft 328 (334)
+.++||+.|..+|+.++....
T Consensus 98 VLIVDDIidTG~Tl~~~~~~L 118 (176)
T PRK05205 98 VILVDDVLYTGRTIRAALDAL 118 (176)
T ss_pred EEEEecccCcHHHHHHHHHHH
Confidence 678999999999999876544
No 24
>PF00233 PDEase_I: 3'5'-cyclic nucleotide phosphodiesterase; InterPro: IPR002073 The cyclic nucleotide phosphodiesterases (PDE) comprise a group of enzymes that degrade the phosphodiester bond in the second messenger molecules cAMP and cGMP. They are divided into 11 families. They regulate the localisation, duration and amplitude of cyclic nucleotide signalling within subcellular domains. PDEs are therefore important for signal transduction. PDE enzymes are often targets for pharmacological inhibition due to their unique tissue distribution, structural properties, and functional properties. Inhibitors include: Roflumilast for chronic obstructive pulmonary disease and asthma [], Sildenafil for erectile dysfunction [] and Cilostazol for peripheral arterial occlusive disease [], amongst others. Retinal 3',5'-cGMP phosphodiesterase is located in photoreceptor outer segments: it is light activated, playing a pivotal role in signal transduction. In rod cells, PDE is oligomeric, comprising an alpha-, a beta- and 2 gamma-subunits, while in cones, PDE is a homodimer of alpha chains, which are associated with several smaller subunits. Both rod and cone PDEs catalyse the hydrolysis of cAMP or cGMP to the corresponding nucleoside 5' monophosphates, both enzymes also binding cGMP with high affinity. The cGMP-binding sites are located in the N-terminal half of the protein sequence, while the catalytic core resides in the C-terminal portion. This entry represents the catalytic domain of PDE which is multihelical and can be divided into three subdomains.; GO: 0004114 3',5'-cyclic-nucleotide phosphodiesterase activity, 0007165 signal transduction; PDB: 3I8V_A 3TVX_A 2QYK_A 1ZKL_A 3G3N_A 4DFF_B 2OUS_B 3SNL_A 2OUY_A 2OUP_B ....
Probab=20.03 E-value=31 Score=32.30 Aligned_cols=47 Identities=23% Similarity=0.292 Sum_probs=35.7
Q ss_pred HHHhCcccccHHHHHHHHHHhhhcCCCCChhhhhHHHHhhhhcCcee
Q 019916 81 VQRLGVAYHFEKEIEDELGKVSHDLDRDDLYVVSLRFRLFRQQGVKI 127 (334)
Q Consensus 81 LqRLGI~~hFe~EI~~~L~~i~~~~~~~dL~~~AL~FRLLRqhGy~V 127 (334)
+-.=|+..-|....+..|..+|++...-.-+.+|+.|+||+..|+++
T Consensus 44 v~HpG~~N~flv~~~~~LA~~Y~d~SvLE~~H~~~~~~lL~~~~~ni 90 (237)
T PF00233_consen 44 VDHPGVNNAFLVKTNSPLAILYNDRSVLENHHCALAFQLLRKEECNI 90 (237)
T ss_dssp TT-SSSCHHHHHHTTSHHHHHTTTSSHHHHHHHHHHHHHHTSTTTTT
T ss_pred CCCCccccchhhccccchhhhcCccCCccccHHHHHHHHHHhhhhhh
Confidence 44568888898888888888886433335688999999999888743
Done!