Your job contains 1 sequence.
>019917
MYKIREIKNKAEQSETMVQEICRDIKKLDFAKKHITTTITALHRLTMLVSAVEQLQVMAS
KRQYKEAAAQLEAVNQLCSHFEAYRDIPKITELREKFKNIKQILKSHVFSDFSSLGTGKE
TEETNLLQQLSDACLVVDALEPSVREELVNNFCRRELTSYEQIFEGAELAKLDKTERRYA
WIKRRIRTNEEIFKIFPPSWHVPYLLNIQFCKKTRKQLEGILDNLTERPDVGTLLLALQR
TIEFEDELAEKFGGDSRSSEIGLDIEEIGRPENNRQNVSDIRKKYERKLAANQGNSTEEK
DGNKDLSVPGAGVCLHVLFTVPSSTKILIYVSVI
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 019917
(334 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2036396 - symbol:AT1G50970 "AT1G50970" species... 908 4.5e-91 1
UNIPROTKB|F1RHI3 - symbol:VPS53 "Uncharacterized protein"... 503 1.7e-47 1
UNIPROTKB|Q5VIR6 - symbol:VPS53 "Vacuolar protein sorting... 496 2.0e-47 1
UNIPROTKB|E2R1D2 - symbol:VPS53 "Uncharacterized protein"... 501 2.7e-47 1
UNIPROTKB|Q5ZLD7 - symbol:VPS53 "Vacuolar protein sorting... 498 5.8e-47 1
MGI|MGI:1915549 - symbol:Vps53 "vacuolar protein sorting ... 497 7.5e-47 1
ZFIN|ZDB-GENE-041114-199 - symbol:vps53 "vacuolar protein... 495 1.3e-46 1
UNIPROTKB|E1BJW7 - symbol:VPS53 "Uncharacterized protein"... 494 1.6e-46 1
DICTYBASE|DDB_G0285901 - symbol:DDB_G0285901 "Vps53-like ... 462 5.2e-43 1
POMBASE|SPAC3A12.15 - symbol:vps53 "GARP complex subunit ... 346 1.4e-30 1
WB|WBGene00011502 - symbol:vps-53 species:6239 "Caenorhab... 334 3.1e-29 1
UNIPROTKB|P34561 - symbol:vps-53 "Vacuolar protein sortin... 334 3.1e-29 1
CGD|CAL0005237 - symbol:VPS53 species:5476 "Candida albic... 250 2.6e-20 1
UNIPROTKB|Q5AB78 - symbol:VPS53 "Putative uncharacterized... 250 2.6e-20 1
RGD|1311391 - symbol:Vps53 "vacuolar protein sorting 53 h... 226 8.3e-19 1
SGD|S000003566 - symbol:VPS53 "Component of the GARP (Gol... 201 3.7e-13 1
>TAIR|locus:2036396 [details] [associations]
symbol:AT1G50970 "AT1G50970" species:3702 "Arabidopsis
thaliana" [GO:0005215 "transporter activity" evidence=ISS]
[GO:0005794 "Golgi apparatus" evidence=ISM] [GO:0006810 "transport"
evidence=ISS] Pfam:PF04100 EMBL:CP002684 InterPro:IPR007234
IPI:IPI00523682 RefSeq:NP_175510.2 UniGene:At.49965
ProteinModelPortal:F4I7Y2 EnsemblPlants:AT1G50970.1 GeneID:841519
KEGG:ath:AT1G50970 OMA:WTIFPAS Uniprot:F4I7Y2
Length = 569
Score = 908 (324.7 bits), Expect = 4.5e-91, P = 4.5e-91
Identities = 190/275 (69%), Positives = 217/275 (78%)
Query: 2 YKIREIKNKAEQSETMVQEICRDIKKLDFAKKHITTTITALHRLTMLVSAVEQLQVMASK 61
+KI+EIK+KAEQ+E MVQ+IC DIKKLDFAKK+ITT +TAL RLTMLVSAV+QLQVM SK
Sbjct: 71 HKIQEIKSKAEQTEAMVQDICSDIKKLDFAKKNITTAVTALSRLTMLVSAVQQLQVMTSK 130
Query: 62 RQYKEAAAQLEAVNQLCSHFEAYRDIPKITELREKFKNIKQILKSHVFSDFSSLGTGKET 121
RQYKEAA QLEA+N+LC+HF+AY D+PKI ELREK KNIKQILK HVFSDFSSLGTG ET
Sbjct: 131 RQYKEAATQLEAINELCNHFKAYMDLPKIMELREKLKNIKQILKFHVFSDFSSLGTGTET 190
Query: 122 EETNLLQQLSDACLVVDALEPSVREELVNNFCRRELTSYEQIFEGAELAKLDKTERRYAW 181
EE LL++LSD+CLVVDALEPSVREEL+NNFC RELTSYEQI+ GAEL LD+ E Y
Sbjct: 191 EELFLLKKLSDSCLVVDALEPSVREELINNFCSRELTSYEQIYVGAELKTLDEIELIYNQ 250
Query: 182 IKRRIRTNEEIFKIFPPSWHVPYLLNIQFCKKTRKQLEGILDNLTERPDVGTLLLALQRT 241
+ IR N+ + IFP SWHVPY L IQ +KTR Q+E IL NL E+ DV LLL L+RT
Sbjct: 251 LSCLIRKNQGKWTIFPASWHVPYRLCIQLSRKTRVQVESILVNLKEKSDVEKLLLELKRT 310
Query: 242 IEFEDELAEKFGGDSRSSEIGLDIEEIGRPENNRQ 276
+EFE EL KFGG IG DI IG NN Q
Sbjct: 311 LEFERELEMKFGG---GGSIGDDI--IGGGGNNSQ 340
>UNIPROTKB|F1RHI3 [details] [associations]
symbol:VPS53 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0000938 "GARP complex" evidence=IEA] Pfam:PF04100
GeneTree:ENSGT00390000015165 OMA:KFINHLF InterPro:IPR007234
EMBL:CU929257 EMBL:CU928997 RefSeq:XP_003131861.1 UniGene:Ssc.19038
Ensembl:ENSSSCT00000019386 GeneID:100523207 KEGG:ssc:100523207
Uniprot:F1RHI3
Length = 832
Score = 503 (182.1 bits), Expect = 1.7e-47, P = 1.7e-47
Identities = 113/304 (37%), Positives = 179/304 (58%)
Query: 3 KIREIKNKAEQSETMVQEICRDIKKLDFAKKHITTTITALHRLTMLVSAVEQLQVMASKR 62
KI++IK+KAE+SE MV+EI RDIK+LD AK+H+TT+IT L+ L ML V+ L+ M +R
Sbjct: 110 KIKDIKDKAEKSEQMVKEITRDIKQLDHAKRHLTTSITTLNHLHMLAGGVDSLEAMTRRR 169
Query: 63 QYKEAAAQLEAVNQLCSHFEAYRDIPKITELREKFKNIKQILKSHVFSDFS----SLGTG 118
QY E A L+ V + HF Y IP+I +L E+ K + L + +DF S GT
Sbjct: 170 QYGEVANLLQGVMNVLEHFHRYMGIPQIRQLSERVKAAQTELGQQILADFEEAFPSQGTK 229
Query: 119 KETEETNLLQQLSDACLVVDALEPSVREELVNNFCRRELTSYEQIF-EGAELAKLDKTER 177
+ +N+L+ DACL+ + L+P +++E++ F ++ L+ Y +F E ++A LDK +R
Sbjct: 230 RPGGPSNVLR---DACLIANILDPRIKQEIIKKFIKQHLSEYLVLFQENQDVAWLDKIDR 286
Query: 178 RYAWIKRRIRTNEEIF-KIFPPSWHVPYLLNIQFCKKTRKQLEGILDNLTERPDVGTLLL 236
RYAWIKR++ EE + ++FP W++ + ++FC TR +L I+ + +V LL
Sbjct: 287 RYAWIKRQLVDYEEKYGRMFPREWYMAERIAVEFCHITRTELAKIMRTRAKEIEVKLLLF 346
Query: 237 ALQRTIEFEDELAEKFGGDSRSSEIGLDIEEIGRPENNRQNVSDIRKKYERKLAANQGNS 296
A+QRT FE LA++F G + + G + P + + D +LA +G+S
Sbjct: 347 AIQRTTNFEGFLAKRFSGCTLTD--GTLKKPESPPASTNPFLEDEAAPEMEELAMEKGDS 404
Query: 297 TEEK 300
+ K
Sbjct: 405 EQPK 408
>UNIPROTKB|Q5VIR6 [details] [associations]
symbol:VPS53 "Vacuolar protein sorting-associated protein
53 homolog" species:9606 "Homo sapiens" [GO:0015031 "protein
transport" evidence=IEA] [GO:0010008 "endosome membrane"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0000938 "GARP complex" evidence=IDA] Pfam:PF04100 EMBL:CH471108
GO:GO:0015031 GO:GO:0010008 GO:GO:0000938 eggNOG:NOG327715
HOGENOM:HOG000265899 OMA:KFINHLF InterPro:IPR007234 CTD:55275
HOVERGEN:HBG092351 OrthoDB:EOG4894KW EMBL:AY444797 EMBL:AF246287
EMBL:EU021218 EMBL:AK001841 EMBL:AK290343 EMBL:AC015853
EMBL:AC027455 EMBL:BC006116 EMBL:AF318335 IPI:IPI00181824
IPI:IPI00656021 IPI:IPI00847977 RefSeq:NP_001121631.1
RefSeq:NP_060759.2 UniGene:Hs.461819 ProteinModelPortal:Q5VIR6
DIP:DIP-59352N IntAct:Q5VIR6 STRING:Q5VIR6 PhosphoSite:Q5VIR6
DMDM:74746777 PaxDb:Q5VIR6 PRIDE:Q5VIR6 Ensembl:ENST00000291074
Ensembl:ENST00000437048 Ensembl:ENST00000571805 GeneID:55275
KEGG:hsa:55275 UCSC:uc002frm.2 UCSC:uc002frn.2
GeneCards:GC17M000381 H-InvDB:HIX0013386 HGNC:HGNC:25608
HPA:HPA022988 HPA:HPA024446 neXtProt:NX_Q5VIR6 PharmGKB:PA142670618
InParanoid:Q5VIR6 ChiTaRS:VPS53 GenomeRNAi:55275 NextBio:59405
ArrayExpress:Q5VIR6 Bgee:Q5VIR6 CleanEx:HS_VPS53
Genevestigator:Q5VIR6 GermOnline:ENSG00000141252 Uniprot:Q5VIR6
Length = 699
Score = 496 (179.7 bits), Expect = 2.0e-47, P = 2.0e-47
Identities = 106/258 (41%), Positives = 161/258 (62%)
Query: 3 KIREIKNKAEQSETMVQEICRDIKKLDFAKKHITTTITALHRLTMLVSAVEQLQVMASKR 62
KI++IK+KAE+SE MV+EI RDIK+LD AK+H+TT+IT L+ L ML V+ L+ M +R
Sbjct: 110 KIKDIKDKAEKSEQMVKEITRDIKQLDHAKRHLTTSITTLNHLHMLAGGVDSLEAMTRRR 169
Query: 63 QYKEAAAQLEAVNQLCSHFEAYRDIPKITELREKFKNIKQILKSHVFSDFS----SLGTG 118
QY E A L+ V + HF Y IP+I +L E+ K + L + +DF S GT
Sbjct: 170 QYGEVANLLQGVMNVLEHFHKYMGIPQIRQLSERVKAAQTELGQQILADFEEAFPSQGTK 229
Query: 119 KETEETNLLQQLSDACLVVDALEPSVREELVNNFCRRELTSYEQIF-EGAELAKLDKTER 177
+ +N+L+ DACLV + L+P +++E++ F ++ L+ Y +F E ++A LDK +R
Sbjct: 230 RPGGPSNVLR---DACLVANILDPRIKQEIIKKFIKQHLSEYLVLFQENQDVAWLDKIDR 286
Query: 178 RYAWIKRRIRTNEEIF-KIFPPSWHVPYLLNIQFCKKTRKQLEGILDNLTERPDVGTLLL 236
RYAWIKR++ EE + ++FP W + + ++FC TR +L I+ + +V LL
Sbjct: 287 RYAWIKRQLVDYEEKYGRMFPREWCMAERIAVEFCHVTRAELAKIMRTRAKEIEVKLLLF 346
Query: 237 ALQRTIEFEDELAEKFGG 254
A+QRT FE LA++F G
Sbjct: 347 AIQRTTNFEGFLAKRFSG 364
>UNIPROTKB|E2R1D2 [details] [associations]
symbol:VPS53 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0000938 "GARP complex" evidence=IEA]
Pfam:PF04100 GeneTree:ENSGT00390000015165 OMA:KFINHLF
InterPro:IPR007234 CTD:55275 EMBL:AAEX03006688 RefSeq:XP_548308.2
ProteinModelPortal:E2R1D2 Ensembl:ENSCAFT00000030338 GeneID:491188
KEGG:cfa:491188 NextBio:20864069 Uniprot:E2R1D2
Length = 832
Score = 501 (181.4 bits), Expect = 2.7e-47, P = 2.7e-47
Identities = 106/258 (41%), Positives = 162/258 (62%)
Query: 3 KIREIKNKAEQSETMVQEICRDIKKLDFAKKHITTTITALHRLTMLVSAVEQLQVMASKR 62
KI++IK+KAE+SE MV+EI RDIK+LD AK+H+TT+IT L+ L ML V+ L+ M +R
Sbjct: 110 KIKDIKDKAEKSEQMVKEITRDIKQLDHAKRHLTTSITTLNHLHMLAGGVDSLEAMTRRR 169
Query: 63 QYKEAAAQLEAVNQLCSHFEAYRDIPKITELREKFKNIKQILKSHVFSDFS----SLGTG 118
QY E A L+ V + HF Y IP+I +L E+ K + L + +DF S GT
Sbjct: 170 QYGEVANLLQGVMNVLEHFHKYMGIPQIRQLSERVKAAQTELGQQILADFEEAFPSQGTK 229
Query: 119 KETEETNLLQQLSDACLVVDALEPSVREELVNNFCRRELTSYEQIF-EGAELAKLDKTER 177
+ +N+L+ DACLV + L+P +++E++ F ++ L+ Y +F E ++A LDK +R
Sbjct: 230 RPGGPSNVLR---DACLVANILDPRIKQEIIKKFIKQHLSEYLVLFQENQDVAWLDKIDR 286
Query: 178 RYAWIKRRIRTNEEIF-KIFPPSWHVPYLLNIQFCKKTRKQLEGILDNLTERPDVGTLLL 236
RYAWIKR++ EE + ++FP W++ + ++FC TR +L I+ + +V LL
Sbjct: 287 RYAWIKRQLVDYEEKYGRMFPREWYMTERIAVEFCHVTRTELAKIMRTRAKEIEVKLLLF 346
Query: 237 ALQRTIEFEDELAEKFGG 254
A+QRT FE LA++F G
Sbjct: 347 AIQRTTNFEGFLAKRFSG 364
>UNIPROTKB|Q5ZLD7 [details] [associations]
symbol:VPS53 "Vacuolar protein sorting-associated protein
53 homolog" species:9031 "Gallus gallus" [GO:0015031 "protein
transport" evidence=IEA] [GO:0005794 "Golgi apparatus"
evidence=IEA] [GO:0010008 "endosome membrane" evidence=IEA]
Pfam:PF04100 GO:GO:0005794 GO:GO:0015031 GO:GO:0010008
eggNOG:NOG327715 HOGENOM:HOG000265899 InterPro:IPR007234
EMBL:AJ719797 IPI:IPI00589817 RefSeq:NP_001012824.1
UniGene:Gga.10180 ProteinModelPortal:Q5ZLD7 STRING:Q5ZLD7
GeneID:417622 KEGG:gga:417622 CTD:55275 HOVERGEN:HBG092351
InParanoid:Q5ZLD7 OrthoDB:EOG4894KW NextBio:20820897 Uniprot:Q5ZLD7
Length = 831
Score = 498 (180.4 bits), Expect = 5.8e-47, P = 5.8e-47
Identities = 106/258 (41%), Positives = 161/258 (62%)
Query: 3 KIREIKNKAEQSETMVQEICRDIKKLDFAKKHITTTITALHRLTMLVSAVEQLQVMASKR 62
KI++IK+KAE+SE MV+EI RDIK+LD AK+H+TT+IT L+ L ML V+ L+ M +R
Sbjct: 109 KIKDIKDKAEKSEQMVKEITRDIKQLDHAKRHLTTSITTLNHLHMLAGGVDSLEAMTRRR 168
Query: 63 QYKEAAAQLEAVNQLCSHFEAYRDIPKITELREKFKNIKQILKSHVFSDFS----SLGTG 118
QY E A L+ V + HF Y IP+I +L E+ K + L + +DF S GT
Sbjct: 169 QYGEVANLLQGVVNVLEHFNKYMGIPQIRQLSERVKAAQNELGQQILADFEEAFPSQGTK 228
Query: 119 KETEETNLLQQLSDACLVVDALEPSVREELVNNFCRRELTSYEQIF-EGAELAKLDKTER 177
+ +N+L+ DACLV + L+P +++E++ F ++ L+ Y +F E ++A LDK +R
Sbjct: 229 RPGGPSNVLR---DACLVANVLDPRIKQEIIKKFIKQHLSEYLVLFQENQDVAWLDKIDR 285
Query: 178 RYAWIKRRIRTNEEIF-KIFPPSWHVPYLLNIQFCKKTRKQLEGILDNLTERPDVGTLLL 236
RYAWIKR++ EE + ++FP W + + ++FC TR +L I+ + +V LL
Sbjct: 286 RYAWIKRQLVDYEEKYGRMFPQEWCMTERIAVEFCHVTRTELAKIMRTRAKEIEVKLLLF 345
Query: 237 ALQRTIEFEDELAEKFGG 254
A+QRT FE LA++F G
Sbjct: 346 AIQRTTNFEGLLAKRFSG 363
>MGI|MGI:1915549 [details] [associations]
symbol:Vps53 "vacuolar protein sorting 53 (yeast)"
species:10090 "Mus musculus" [GO:0000938 "GARP complex"
evidence=ISO] [GO:0005768 "endosome" evidence=IEA] [GO:0005794
"Golgi apparatus" evidence=IEA] [GO:0006810 "transport"
evidence=IEA] [GO:0015031 "protein transport" evidence=IEA]
[GO:0016020 "membrane" evidence=IEA] MGI:MGI:1915549 Pfam:PF04100
GO:GO:0005794 GO:GO:0015031 GO:GO:0010008 EMBL:AL591129
eggNOG:NOG327715 GeneTree:ENSGT00390000015165 HOGENOM:HOG000265899
OMA:KFINHLF InterPro:IPR007234 CTD:55275 HOVERGEN:HBG092351
OrthoDB:EOG4894KW EMBL:AK009970 EMBL:AK019408 EMBL:AK033495
EMBL:AK049259 EMBL:BC034371 IPI:IPI00229808 IPI:IPI00387427
RefSeq:NP_080940.2 UniGene:Mm.46397 ProteinModelPortal:Q8CCB4
STRING:Q8CCB4 PhosphoSite:Q8CCB4 PaxDb:Q8CCB4 PRIDE:Q8CCB4
Ensembl:ENSMUST00000056601 Ensembl:ENSMUST00000108419 GeneID:68299
KEGG:mmu:68299 UCSC:uc007kfa.1 UCSC:uc011xzq.1 InParanoid:Q8CCB4
NextBio:326953 Bgee:Q8CCB4 CleanEx:MM_VPS53 Genevestigator:Q8CCB4
GermOnline:ENSMUSG00000017288 Uniprot:Q8CCB4
Length = 832
Score = 497 (180.0 bits), Expect = 7.5e-47, P = 7.5e-47
Identities = 105/258 (40%), Positives = 162/258 (62%)
Query: 3 KIREIKNKAEQSETMVQEICRDIKKLDFAKKHITTTITALHRLTMLVSAVEQLQVMASKR 62
KI++IK+KAE+SE MV+EI RDIK+LD AK+H+TT+IT L+ L ML V+ L+ M +R
Sbjct: 110 KIKDIKDKAEKSEQMVKEITRDIKQLDHAKRHLTTSITTLNHLHMLAGGVDSLEAMTRRR 169
Query: 63 QYKEAAAQLEAVNQLCSHFEAYRDIPKITELREKFKNIKQILKSHVFSDFS----SLGTG 118
QY E A L+ V + HF Y IP+I +L E+ K + L + +DF S GT
Sbjct: 170 QYGEVANLLQGVMNVLEHFHKYMGIPQIRQLSERVKAAQTELGQQILADFEEAFPSQGTK 229
Query: 119 KETEETNLLQQLSDACLVVDALEPSVREELVNNFCRRELTSYEQIF-EGAELAKLDKTER 177
+ +N+L+ DACLV + L+P +++E++ F ++ L+ Y +F E ++A LDK +R
Sbjct: 230 RPGGPSNVLR---DACLVANILDPRIKQEIIKKFIKQHLSEYLVLFQENQDVAWLDKIDR 286
Query: 178 RYAWIKRRIRTNEEIF-KIFPPSWHVPYLLNIQFCKKTRKQLEGILDNLTERPDVGTLLL 236
RYAW+KR++ EE + ++FP W + ++++FC TR +L I+ + +V LL
Sbjct: 287 RYAWVKRQLVDYEEKYGRMFPREWCMTERISVEFCHVTRAELSKIMRARAKEIEVKLLLF 346
Query: 237 ALQRTIEFEDELAEKFGG 254
A+QRT FE LA++F G
Sbjct: 347 AIQRTTNFEGFLAKRFSG 364
>ZFIN|ZDB-GENE-041114-199 [details] [associations]
symbol:vps53 "vacuolar protein sorting 53 homolog
(S. cerevisiae)" species:7955 "Danio rerio" [GO:0008150
"biological_process" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0003674 "molecular_function" evidence=ND]
Pfam:PF04100 ZFIN:ZDB-GENE-041114-199 EMBL:BX908796
GeneTree:ENSGT00390000015165 InterPro:IPR007234 IPI:IPI00994476
Ensembl:ENSDART00000122184 ArrayExpress:E7FAG0 Bgee:E7FAG0
Uniprot:E7FAG0
Length = 832
Score = 495 (179.3 bits), Expect = 1.3e-46, P = 1.3e-46
Identities = 103/255 (40%), Positives = 159/255 (62%)
Query: 3 KIREIKNKAEQSETMVQEICRDIKKLDFAKKHITTTITALHRLTMLVSAVEQLQVMASKR 62
KI++IK+KAE+SE MV+EI RDIK+LD AK+H+TT+IT L+ L ML V+ L+ M KR
Sbjct: 110 KIKDIKDKAEKSEQMVKEITRDIKQLDHAKRHLTTSITTLNHLHMLAGGVDSLEAMTRKR 169
Query: 63 QYKEAAAQLEAVNQLCSHFEAYRDIPKITELREKFKNIKQILKSHVFSDFSSLGTGKETE 122
QY E A L+ V + HF+ Y IP+I +L E+ K + L + + +DF + ++
Sbjct: 170 QYGEVANLLQGVVNVLEHFQKYMGIPQIRQLSERVKAAQSELGTQILADFEETFPAQGSK 229
Query: 123 ETNLLQ-QLSDACLVVDALEPSVREELVNNFCRRELTSYEQIF-EGAELAKLDKTERRYA 180
++ L DACLV + L+P +++E++ F R+ L+ Y +F E ++A LDK +RRYA
Sbjct: 230 KSGGPSIVLRDACLVANVLDPRIKQEIIKKFIRQHLSEYMVLFQENQDVAWLDKIDRRYA 289
Query: 181 WIKRRIRTNEEIF-KIFPPSWHVPYLLNIQFCKKTRKQLEGILDNLTERPDVGTLLLALQ 239
WIKR++ EE + ++FP W + + ++FC TR +L ++ +V LL A+Q
Sbjct: 290 WIKRQLVDYEEKYGRMFPEEWCMTERIAVEFCHITRTELTKLMRTRAREIEVKLLLFAIQ 349
Query: 240 RTIEFEDELAEKFGG 254
RT FE LA++F G
Sbjct: 350 RTTNFEGLLAKRFSG 364
>UNIPROTKB|E1BJW7 [details] [associations]
symbol:VPS53 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0000938 "GARP complex" evidence=IEA] Pfam:PF04100
GeneTree:ENSGT00390000015165 OMA:KFINHLF InterPro:IPR007234
CTD:55275 EMBL:DAAA02048650 EMBL:DAAA02048651 EMBL:DAAA02048652
IPI:IPI00699470 RefSeq:NP_001180097.1 UniGene:Bt.106826
Ensembl:ENSBTAT00000024133 GeneID:512144 KEGG:bta:512144
NextBio:20870262 Uniprot:E1BJW7
Length = 832
Score = 494 (179.0 bits), Expect = 1.6e-46, P = 1.6e-46
Identities = 105/258 (40%), Positives = 161/258 (62%)
Query: 3 KIREIKNKAEQSETMVQEICRDIKKLDFAKKHITTTITALHRLTMLVSAVEQLQVMASKR 62
KI++IK+KAE+SE MV+EI RDIK+LD AK+H+TT+IT L+ L ML V+ L+ M +R
Sbjct: 110 KIKDIKDKAEKSEQMVKEITRDIKQLDHAKRHLTTSITTLNHLHMLAGGVDSLEAMTRRR 169
Query: 63 QYKEAAAQLEAVNQLCSHFEAYRDIPKITELREKFKNIKQILKSHVFSDFS----SLGTG 118
QY E A L+ V + HF Y IP+I +L E+ K + L + +DF S GT
Sbjct: 170 QYGEVANLLQGVMNVLEHFHKYMGIPQIRQLSERVKAAQTELGQQILADFEEAFPSQGTK 229
Query: 119 KETEETNLLQQLSDACLVVDALEPSVREELVNNFCRRELTSYEQIF-EGAELAKLDKTER 177
+ +N+L+ DAC V + L+P +++E++ F ++ L+ Y +F E ++A LDK +R
Sbjct: 230 RPGGPSNVLR---DACQVANILDPRIKQEIIKKFIKQHLSEYLVLFQENQDVAWLDKIDR 286
Query: 178 RYAWIKRRIRTNEEIF-KIFPPSWHVPYLLNIQFCKKTRKQLEGILDNLTERPDVGTLLL 236
RYAWIKR++ EE + ++FP W++ + ++FC TR +L I+ + +V LL
Sbjct: 287 RYAWIKRQLVDYEEKYGRMFPREWYMAERIAVEFCHITRTELAKIMRTRAKEIEVKLLLF 346
Query: 237 ALQRTIEFEDELAEKFGG 254
A+QRT FE LA++F G
Sbjct: 347 AIQRTTNFEGFLAKRFSG 364
>DICTYBASE|DDB_G0285901 [details] [associations]
symbol:DDB_G0285901 "Vps53-like domain-containing
protein" species:44689 "Dictyostelium discoideum" [GO:0008150
"biological_process" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0003674 "molecular_function" evidence=ND]
[GO:0044351 "macropinocytosis" evidence=RCA] dictyBase:DDB_G0285901
Pfam:PF04100 EMBL:AAFI02000082 eggNOG:NOG327715 OMA:KFINHLF
InterPro:IPR007234 RefSeq:XP_637994.1 PRIDE:Q54MJ6
EnsemblProtists:DDB0233070 GeneID:8625345 KEGG:ddi:DDB_G0285901
InParanoid:Q54MJ6 ProtClustDB:CLSZ2846701 Uniprot:Q54MJ6
Length = 838
Score = 462 (167.7 bits), Expect = 5.2e-43, P = 5.2e-43
Identities = 109/309 (35%), Positives = 165/309 (53%)
Query: 3 KIREIKNKAEQSETMVQEICRDIKKLDFAKKHITTTITALHRLTMLVSAVEQLQVMASKR 62
KI +IK+KA QSE MV EIC+DIK LD+AKK++TT IT L RL M+V VEQL+ M K+
Sbjct: 111 KITDIKSKANQSEQMVTEICKDIKSLDYAKKNLTTAITTLKRLHMMVMGVEQLKEMVDKK 170
Query: 63 QYKEAAAQLEAVNQLCSHFEAYRDIPKITELREKFKNIKQILKSHVFSDFSSLGTGKETE 122
QY A LEA Q F+ YR+ PKI L ++ NI+ +K ++ DF+ +
Sbjct: 171 QYGTVAKLLEATAQFAEGFKDYRESPKIYALNKELDNIRSRVKDQIYEDFNQYVPYTSNQ 230
Query: 123 -ETNLLQQLSDACLVVDALEPSVREELVNNFCRRELTSYEQIFEG-AELAKLDKTERRYA 180
+ N + +C V+DAL V+++ + FC +L+SY++ F +E LD T+RR+
Sbjct: 231 IKPNEENRWKSSCYVIDALGSEVKKDFLRWFCGSQLSSYKKAFGSQSESYTLDSTDRRFG 290
Query: 181 WIKRRIRT-NEEIFKIFPPSWHVPYLLNIQFCKKTRKQLEGILDNLTERPDVGTLLLALQ 239
W R+I+ EE +FPP W + ++ +FC TR L +L +V L+ AL+
Sbjct: 291 WWSRQIKIFREEYALVFPPEWCMEEQISYEFCILTRLDLSEVLLINKNSIEVPQLIKALK 350
Query: 240 RTIEFEDELAEKFGGDSRS-SEIGLDIEEIGRPENNRQNVS--DIRKKYERKLAANQGNS 296
+T+ FE++L E F +++ S + ENN + D + NS
Sbjct: 351 KTLTFENKLYELFAQNNQKLSSPTMSSTPSNESENNSDDSDQDDSDDDNGENQVDGENNS 410
Query: 297 TEEKDGNKD 305
GN +
Sbjct: 411 NNNNKGNSE 419
>POMBASE|SPAC3A12.15 [details] [associations]
symbol:vps53 "GARP complex subunit Vps53 (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0000938 "GARP complex"
evidence=ISO] [GO:0003674 "molecular_function" evidence=ND]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0006886 "intracellular
protein transport" evidence=IC] [GO:0006896 "Golgi to vacuole
transport" evidence=ISO] [GO:0010008 "endosome membrane"
evidence=IEA] [GO:0016192 "vesicle-mediated transport"
evidence=ISO] [GO:0042147 "retrograde transport, endosome to Golgi"
evidence=ISO] PomBase:SPAC3A12.15 Pfam:PF04100 GO:GO:0006886
EMBL:CU329670 GO:GO:0010008 GO:GO:0006896 GO:GO:0042147
GO:GO:0000938 eggNOG:NOG327715 OMA:KFINHLF InterPro:IPR007234
PIR:T38683 RefSeq:NP_593341.1 EnsemblFungi:SPAC3A12.15.1
GeneID:2542930 KEGG:spo:SPAC3A12.15 OrthoDB:EOG42JS19
NextBio:20803966 Uniprot:P87129
Length = 756
Score = 346 (126.9 bits), Expect = 1.4e-30, P = 1.4e-30
Identities = 74/259 (28%), Positives = 143/259 (55%)
Query: 1 MYKIREIKNKAEQSETMVQEICRDIKKLDFAKKHITTTITALHRLTMLVSAVEQLQVMAS 60
+ ++ +++ AE +++ + ++ +IK LDFAK+++ T++T L RL MLV+A E+L+ +
Sbjct: 85 LQELSTLQSVAENTQSSIVQMTSEIKNLDFAKQNLATSMTMLKRLQMLVTAYEKLRTLRQ 144
Query: 61 KRQYKEAAAQLEAVNQLCSHFEAYRDIPKITELREKFKNIKQILKSHVFSDFSSLGTGKE 120
+++ EA + ++A QL + F+ YR + +I L ++ VF F S KE
Sbjct: 145 NQKFGEAISLMQATLQLLNFFKKYRSVERIASLSRSISEFQKSFYEQVFDTFQSQFK-KE 203
Query: 121 TE-----ETNLLQQLSDACLVVDALEPSVREELVNNFCRRELTSYEQIF-EGAELAKLDK 174
+ + +Q L++ C +D E ++ +CR +L + ++F E E L+
Sbjct: 204 SGMRGGFSPSSVQYLNELCRFIDIFAGDPPESVIRWYCRHQLEDFMKVFRENEEAGSLEN 263
Query: 175 TERRYAWIKRRIRTNEEIFK-IFPPSWHVPYLLNIQFCKKTRKQLEGILDNLTERPDVGT 233
RRY W K+ ++T +++ K IFPP W V + L FC++T+ L +L + +R +
Sbjct: 264 LPRRYTWFKKLLQTYDQLHKPIFPPHWKVDFRLYEVFCEETKNDLSKLLKD--DRLSLQV 321
Query: 234 LLLALQRTIEFEDELAEKF 252
+ +L++T+EFE + +F
Sbjct: 322 FVASLEQTLEFESFIDHRF 340
>WB|WBGene00011502 [details] [associations]
symbol:vps-53 species:6239 "Caenorhabditis elegans"
[GO:0040015 "negative regulation of multicellular organism growth"
evidence=IMP] [GO:0000938 "GARP complex" evidence=IPI] Pfam:PF04100
GO:GO:0010008 GO:GO:0040015 GO:GO:0060378 EMBL:Z27079 GO:GO:0000938
PIR:D88564 PIR:S41008 RefSeq:NP_001255027.1 RefSeq:NP_001255028.1
ProteinModelPortal:P34561 PaxDb:P34561 PRIDE:P34561
EnsemblMetazoa:T05G5.8a.1 EnsemblMetazoa:T05G5.8a.2
EnsemblMetazoa:T05G5.8a.3 GeneID:176377 KEGG:cel:CELE_T05G5.8
UCSC:T05G5.8.2 CTD:176377 WormBase:T05G5.8a WormBase:T05G5.8b
eggNOG:NOG327715 GeneTree:ENSGT00390000015165 HOGENOM:HOG000265899
InParanoid:P34561 OMA:KFINHLF NextBio:892314 InterPro:IPR007234
Uniprot:P34561
Length = 798
Score = 334 (122.6 bits), Expect = 3.1e-29, P = 3.1e-29
Identities = 86/255 (33%), Positives = 135/255 (52%)
Query: 4 IREIKNKAEQSETMVQEICRDIKKLDFAKKHITTTITALHRLTMLVSAVEQLQVMASKRQ 63
I I+ + + S+ +V+E+ RDIK+LD AK+++T +IT LH L +L++ VE L K+
Sbjct: 101 IGSIRERTKSSDEIVREMTRDIKQLDIAKRNLTASITTLHHLHILLTGVESLGAWVDKKD 160
Query: 64 YKEAAAQLEAVNQLCSHFEAYRDIPKITELREKFKNIKQILKSHVFSDF-SSLGTGKETE 122
Y A QL A+ + F+AY++ +I L + +K L + D ++ TG+
Sbjct: 161 YSSIARQLPAILNVLQLFDAYKESDQIANLSGQLDKLKASLTIQLAKDLKNAFQTGQ--- 217
Query: 123 ETNLLQQLSDACLVVDALEPSVREELVNNFCRRELTSYEQIF-EGAELAKLDKTERRYAW 181
L +++D C V ALE +V+E V F ++L+ Y I+ + E A LDK + RY W
Sbjct: 218 ---LSDRITDMCRVAAALEGNVKENFVKWFIEQQLSEYVIIYADNEEGAWLDKVDDRYKW 274
Query: 182 IKRRIRTNEE--IFKIFPPSWHVPYLLNIQFCKKTRKQLEGILDNLTERPDVGTLLL--A 237
R++ E + IFP WH+ L +FC TR L I+ R D+ LL A
Sbjct: 275 FVRKLTDFERAGLSNIFPADWHMGRRLTSEFCTVTRDILYRIMTR--RRQDLDWKLLGHA 332
Query: 238 LQRTIEFEDELAEKF 252
+Q T FE L ++F
Sbjct: 333 IQHTKMFEALLTKRF 347
>UNIPROTKB|P34561 [details] [associations]
symbol:vps-53 "Vacuolar protein sorting-associated protein
53 homolog" species:6239 "Caenorhabditis elegans" [GO:0005515
"protein binding" evidence=IPI] [GO:0000938 "GARP complex"
evidence=IDA] [GO:0060378 "regulation of brood size" evidence=IMP]
Pfam:PF04100 GO:GO:0010008 GO:GO:0040015 GO:GO:0060378 EMBL:Z27079
GO:GO:0000938 PIR:D88564 PIR:S41008 RefSeq:NP_001255027.1
RefSeq:NP_001255028.1 ProteinModelPortal:P34561 PaxDb:P34561
PRIDE:P34561 EnsemblMetazoa:T05G5.8a.1 EnsemblMetazoa:T05G5.8a.2
EnsemblMetazoa:T05G5.8a.3 GeneID:176377 KEGG:cel:CELE_T05G5.8
UCSC:T05G5.8.2 CTD:176377 WormBase:T05G5.8a WormBase:T05G5.8b
eggNOG:NOG327715 GeneTree:ENSGT00390000015165 HOGENOM:HOG000265899
InParanoid:P34561 OMA:KFINHLF NextBio:892314 InterPro:IPR007234
Uniprot:P34561
Length = 798
Score = 334 (122.6 bits), Expect = 3.1e-29, P = 3.1e-29
Identities = 86/255 (33%), Positives = 135/255 (52%)
Query: 4 IREIKNKAEQSETMVQEICRDIKKLDFAKKHITTTITALHRLTMLVSAVEQLQVMASKRQ 63
I I+ + + S+ +V+E+ RDIK+LD AK+++T +IT LH L +L++ VE L K+
Sbjct: 101 IGSIRERTKSSDEIVREMTRDIKQLDIAKRNLTASITTLHHLHILLTGVESLGAWVDKKD 160
Query: 64 YKEAAAQLEAVNQLCSHFEAYRDIPKITELREKFKNIKQILKSHVFSDF-SSLGTGKETE 122
Y A QL A+ + F+AY++ +I L + +K L + D ++ TG+
Sbjct: 161 YSSIARQLPAILNVLQLFDAYKESDQIANLSGQLDKLKASLTIQLAKDLKNAFQTGQ--- 217
Query: 123 ETNLLQQLSDACLVVDALEPSVREELVNNFCRRELTSYEQIF-EGAELAKLDKTERRYAW 181
L +++D C V ALE +V+E V F ++L+ Y I+ + E A LDK + RY W
Sbjct: 218 ---LSDRITDMCRVAAALEGNVKENFVKWFIEQQLSEYVIIYADNEEGAWLDKVDDRYKW 274
Query: 182 IKRRIRTNEE--IFKIFPPSWHVPYLLNIQFCKKTRKQLEGILDNLTERPDVGTLLL--A 237
R++ E + IFP WH+ L +FC TR L I+ R D+ LL A
Sbjct: 275 FVRKLTDFERAGLSNIFPADWHMGRRLTSEFCTVTRDILYRIMTR--RRQDLDWKLLGHA 332
Query: 238 LQRTIEFEDELAEKF 252
+Q T FE L ++F
Sbjct: 333 IQHTKMFEALLTKRF 347
>CGD|CAL0005237 [details] [associations]
symbol:VPS53 species:5476 "Candida albicans" [GO:0003674
"molecular_function" evidence=ND] [GO:0000938 "GARP complex"
evidence=IEA] [GO:0006896 "Golgi to vacuole transport"
evidence=IEA] [GO:0042147 "retrograde transport, endosome to Golgi"
evidence=IEA] CGD:CAL0005237 Pfam:PF04100 EMBL:AACQ01000036
EMBL:AACQ01000035 eggNOG:NOG327715 InterPro:IPR007234
RefSeq:XP_718949.1 RefSeq:XP_719053.1 GeneID:3639319 GeneID:3639467
KEGG:cal:CaO19.13513 KEGG:cal:CaO19.6094 Uniprot:Q5AB78
Length = 699
Score = 250 (93.1 bits), Expect = 2.6e-20, P = 2.6e-20
Identities = 66/245 (26%), Positives = 122/245 (49%)
Query: 4 IREIKNKAEQSETMVQEICRDIKKLDFAKKHITTTITALHRLTMLVSAVEQLQVMASKRQ 63
I EIK + ++ + ++ I++LD KK++ ++T L RL MLV+ L +
Sbjct: 66 IGEIKRDSSMTKQSISQMTGSIQRLDCTKKNLVASMTLLKRLQMLVNVNNTLSSILPSHD 125
Query: 64 YKEAAAQLEAVNQLCSHFEAYRDIPKITELREKFKNIKQILKSHVFSDFSSLGTGKETEE 123
YKE L + +L F+ Y+ I +I ++ + + L +F DF K +E
Sbjct: 126 YKEIYQLLGVLKELLQFFQPYKSIDEINQINLMVVHTQNKLIDDIFMDFEEY---KNKDE 182
Query: 124 TNLLQQLSDACLVVDALEPSVREELVNNFCRRELTSYEQIFEGAELAKLDKTERRYAWIK 183
+QL +++ ++ +++L+ F +L ++IF G E LD RR+ + K
Sbjct: 183 ----EQLLFGARILELIDVKYKDKLLAWFYNLQLQDLQEIFSG-EAGSLDNLNRRFIYFK 237
Query: 184 RRIRTNEEIFKIFPPSWHVPYLLNIQFCKKTRKQLEGILDNLTERPDVGTLLLALQRTIE 243
++ ++ +KIFP W + + +FC+ TR+ + +L N + + TLL L +T+E
Sbjct: 238 NILKQVQQ-YKIFP--WDISNAITQEFCQITRQDISKLLYN--SKIESKTLLDNLTKTLE 292
Query: 244 FEDEL 248
FE L
Sbjct: 293 FEKSL 297
>UNIPROTKB|Q5AB78 [details] [associations]
symbol:VPS53 "Putative uncharacterized protein VPS53"
species:237561 "Candida albicans SC5314" [GO:0003674
"molecular_function" evidence=ND] CGD:CAL0005237 Pfam:PF04100
EMBL:AACQ01000036 EMBL:AACQ01000035 eggNOG:NOG327715
InterPro:IPR007234 RefSeq:XP_718949.1 RefSeq:XP_719053.1
GeneID:3639319 GeneID:3639467 KEGG:cal:CaO19.13513
KEGG:cal:CaO19.6094 Uniprot:Q5AB78
Length = 699
Score = 250 (93.1 bits), Expect = 2.6e-20, P = 2.6e-20
Identities = 66/245 (26%), Positives = 122/245 (49%)
Query: 4 IREIKNKAEQSETMVQEICRDIKKLDFAKKHITTTITALHRLTMLVSAVEQLQVMASKRQ 63
I EIK + ++ + ++ I++LD KK++ ++T L RL MLV+ L +
Sbjct: 66 IGEIKRDSSMTKQSISQMTGSIQRLDCTKKNLVASMTLLKRLQMLVNVNNTLSSILPSHD 125
Query: 64 YKEAAAQLEAVNQLCSHFEAYRDIPKITELREKFKNIKQILKSHVFSDFSSLGTGKETEE 123
YKE L + +L F+ Y+ I +I ++ + + L +F DF K +E
Sbjct: 126 YKEIYQLLGVLKELLQFFQPYKSIDEINQINLMVVHTQNKLIDDIFMDFEEY---KNKDE 182
Query: 124 TNLLQQLSDACLVVDALEPSVREELVNNFCRRELTSYEQIFEGAELAKLDKTERRYAWIK 183
+QL +++ ++ +++L+ F +L ++IF G E LD RR+ + K
Sbjct: 183 ----EQLLFGARILELIDVKYKDKLLAWFYNLQLQDLQEIFSG-EAGSLDNLNRRFIYFK 237
Query: 184 RRIRTNEEIFKIFPPSWHVPYLLNIQFCKKTRKQLEGILDNLTERPDVGTLLLALQRTIE 243
++ ++ +KIFP W + + +FC+ TR+ + +L N + + TLL L +T+E
Sbjct: 238 NILKQVQQ-YKIFP--WDISNAITQEFCQITRQDISKLLYN--SKIESKTLLDNLTKTLE 292
Query: 244 FEDEL 248
FE L
Sbjct: 293 FEKSL 297
>RGD|1311391 [details] [associations]
symbol:Vps53 "vacuolar protein sorting 53 homolog (S.
cerevisiae)" species:10116 "Rattus norvegicus" [GO:0000938 "GARP
complex" evidence=ISO] RGD:1311391 Pfam:PF04100 InterPro:IPR007234
IPI:IPI00776805 Ensembl:ENSRNOT00000056287 ArrayExpress:F1LXD5
Uniprot:F1LXD5
Length = 120
Score = 226 (84.6 bits), Expect = 8.3e-19, P = 8.3e-19
Identities = 45/86 (52%), Positives = 60/86 (69%)
Query: 3 KIREIKNKAEQSETMVQEICRDIKKLDFAKKHITTTITALHRLTMLVSAVEQLQVMASKR 62
KI++IK+KAE+SE MV+EI RDIK+LD AK+H+TT+IT L+ L ML V+ L+ M +R
Sbjct: 35 KIKDIKDKAEKSEQMVKEITRDIKQLDHAKRHLTTSITTLNHLHMLAGGVDSLEAMTRRR 94
Query: 63 QYKEAAAQLEAVNQLCSHFEAYRDIP 88
QY E A L+ V + HF Y IP
Sbjct: 95 QYGEVANLLQGVMNVLEHFHKYMGIP 120
>SGD|S000003566 [details] [associations]
symbol:VPS53 "Component of the GARP (Golgi-associated
retrograde protein) complex" species:4932 "Saccharomyces
cerevisiae" [GO:0000938 "GARP complex" evidence=IPI] [GO:0005794
"Golgi apparatus" evidence=IEA;IDA;TAS] [GO:0042147 "retrograde
transport, endosome to Golgi" evidence=IDA] [GO:0006896 "Golgi to
vacuole transport" evidence=IMP] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0003674 "molecular_function" evidence=ND]
[GO:0006810 "transport" evidence=IEA] [GO:0016020 "membrane"
evidence=IEA] [GO:0015031 "protein transport" evidence=IEA]
[GO:0010008 "endosome membrane" evidence=IEA] [GO:0005768
"endosome" evidence=IEA] SGD:S000003566 Pfam:PF04100 EMBL:BK006943
GO:GO:0015031 GO:GO:0010008 GO:GO:0006896 GO:GO:0042147
GO:GO:0000938 eggNOG:NOG327715 GeneTree:ENSGT00390000015165
InterPro:IPR007234 OrthoDB:EOG42JS19 EMBL:Z49304 PIR:S56801
RefSeq:NP_012505.1 PDB:3NS4 PDBsum:3NS4 ProteinModelPortal:P47061
SMR:P47061 DIP:DIP-5902N IntAct:P47061 MINT:MINT-619612
STRING:P47061 PaxDb:P47061 EnsemblFungi:YJL029C GeneID:853423
KEGG:sce:YJL029C CYGD:YJL029c HOGENOM:HOG000000812 OMA:VEDYSRY
EvolutionaryTrace:P47061 NextBio:973951 Genevestigator:P47061
GermOnline:YJL029C Uniprot:P47061
Length = 822
Score = 201 (75.8 bits), Expect = 3.7e-13, P = 3.7e-13
Identities = 59/256 (23%), Positives = 118/256 (46%)
Query: 5 REIKNKAEQSETMVQEICRDIKKLDFAKKHITTTITALHRLTMLVSAVEQLQVMASKRQY 64
+E ++ + +E + + I LD AKK++T ++T L +L + Q + S+ +
Sbjct: 74 KETQDVSASTELTISNLTEGISYLDIAKKNLTHSLTLFQNLKILTDSYIQCNELLSQGSF 133
Query: 65 KEAAAQLEAVNQLCSH-FEAYRDIPKITELREKFKNIKQILKSHVFSDFSSLGTGKETEE 123
K+ + + + L + F +Y+ + +I L +K S + ++++L +G E
Sbjct: 134 KKMVSPYKIMCSLAENTFISYKSLDEINYLLSSISRLKGDTLSKIKQNYNALFSGGNISE 193
Query: 124 --TNLLQQLSD-ACLVVDALEPSVREELVNNFCRRELTSYEQIFE-GAELAKLDKTERRY 179
T L +L + AC ++D + S R ++++ + L ++IF E L+ RRY
Sbjct: 194 HDTALTMELREGACELLDC-DTSTRAQMIDWCLDKLLFEMKEIFRVDDEAGSLENLSRRY 252
Query: 180 AWIKRRIRT-NEEIFKIFPPSWHVPYLLNIQFCKKTRKQLEGILDN--LTERPDVGTLLL 236
+ K+ + N + F W + L F T K L+ +L + P + +
Sbjct: 253 IYFKKILNNFNSKFADYFLKDWEMAVRLTTTFYHITHKDLQTLLKREFKDKNPSIDLFMT 312
Query: 237 ALQRTIEFEDELAEKF 252
ALQ T++FE + +F
Sbjct: 313 ALQSTLDFEKYIDVRF 328
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.317 0.133 0.370 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 334 334 0.00091 116 3 11 22 0.41 34
33 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 16
No. of states in DFA: 592 (63 KB)
Total size of DFA: 202 KB (2115 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 33.21u 0.14s 33.35t Elapsed: 00:00:02
Total cpu time: 33.21u 0.14s 33.35t Elapsed: 00:00:02
Start: Fri May 10 14:45:49 2013 End: Fri May 10 14:45:51 2013