BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 019917
         (334 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1VDW|A Chain A, A Hypothetical Protein Ph1897 From Pyrococcus Horikoshii
           With Similarities For Inositol-1 Monophosphatase
 pdb|1VDW|B Chain B, A Hypothetical Protein Ph1897 From Pyrococcus Horikoshii
           With Similarities For Inositol-1 Monophosphatase
          Length = 254

 Score = 29.6 bits (65), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 15/46 (32%), Positives = 25/46 (54%)

Query: 98  KNIKQILKSHVFSDFSSLGTGKETEETNLLQQLSDACLVVDALEPS 143
           K + ++ ++ + S F  LG    +EE   + Q SD  +VVD L+ S
Sbjct: 44  KVVDKVAENIIISKFKDLGVNVVSEEIGRIDQGSDYTVVVDPLDGS 89


>pdb|3U0Z|A Chain A, Tetramerization Dynamics Of The C-Terminus Underlies
           Isoform-Specific Camp-Gating In Hcn Channels
 pdb|3U0Z|B Chain B, Tetramerization Dynamics Of The C-Terminus Underlies
           Isoform-Specific Camp-Gating In Hcn Channels
          Length = 210

 Score = 28.9 bits (63), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 28/110 (25%), Positives = 52/110 (47%), Gaps = 31/110 (28%)

Query: 59  ASKRQYKEAAAQLEAVNQLCSHFEAYRDIPKITELREKFKNIKQILKSHVFSDFSSLGTG 118
           +S+RQY+E   Q+E        + ++  +P   ++R+K  +  +    H +        G
Sbjct: 9   SSRRQYQEKYKQVE-------QYMSFHKLP--ADMRQKIHDYYE----HRYQ-------G 48

Query: 119 KETEETNLLQQLSDACLVVDALEPSVREELVNNFCRRELTSYEQIFEGAE 168
           K  +E N+L +L+D           +REE+VN  CR+ L +   +F  A+
Sbjct: 49  KIFDEENILSELNDP----------LREEIVNFNCRK-LVATMPLFANAD 87


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.317    0.133    0.370 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,866,327
Number of Sequences: 62578
Number of extensions: 342926
Number of successful extensions: 1152
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1147
Number of HSP's gapped (non-prelim): 12
length of query: 334
length of database: 14,973,337
effective HSP length: 99
effective length of query: 235
effective length of database: 8,778,115
effective search space: 2062857025
effective search space used: 2062857025
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)