Query 019917
Match_columns 334
No_of_seqs 115 out of 173
Neff 5.6
Searched_HMMs 46136
Date Fri Mar 29 05:33:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019917.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019917hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04100 Vps53_N: Vps53-like, 100.0 1.6E-88 3.4E-93 671.1 27.9 291 2-332 71-364 (383)
2 KOG2180 Late Golgi protein sor 100.0 2.1E-86 4.6E-91 676.1 26.2 292 1-332 85-379 (793)
3 PF10475 DUF2450: Protein of u 97.6 0.0071 1.5E-07 58.3 18.1 153 2-161 67-233 (291)
4 PF10191 COG7: Golgi complex c 96.8 0.36 7.8E-06 52.8 23.7 239 3-255 85-336 (766)
5 PF06248 Zw10: Centromere/kine 96.8 0.9 1.9E-05 48.0 27.6 214 33-250 93-357 (593)
6 PF15469 Sec5: Exocyst complex 95.1 1.9 4.1E-05 38.4 16.3 107 6-115 44-151 (182)
7 PF07393 Sec10: Exocyst comple 92.4 19 0.00041 39.0 21.9 239 4-254 8-277 (710)
8 KOG2115 Vacuolar sorting prote 91.4 8.1 0.00018 42.9 16.0 113 3-116 276-402 (951)
9 KOG2176 Exocyst complex, subun 85.8 12 0.00026 41.1 12.7 67 5-71 97-163 (800)
10 KOG0412 Golgi transport comple 85.6 51 0.0011 36.1 17.0 96 19-114 101-202 (773)
11 PF03357 Snf7: Snf7; InterPro 66.7 40 0.00088 28.9 8.5 42 62-103 78-119 (171)
12 PF04924 Pox_A6: Poxvirus A6 p 63.7 1.5E+02 0.0033 29.8 12.4 46 143-188 178-244 (371)
13 PF07138 DUF1386: Protein of u 62.6 44 0.00096 32.9 8.4 157 60-245 19-207 (324)
14 KOG3691 Exocyst complex subuni 54.8 2.1E+02 0.0046 32.4 12.8 75 36-112 130-204 (982)
15 PF04124 Dor1: Dor1-like famil 48.0 2.8E+02 0.0061 27.2 20.5 105 5-112 49-167 (338)
16 PF01858 RB_A: Retinoblastoma- 44.4 1.5E+02 0.0033 27.0 8.6 153 35-215 3-176 (194)
17 PF10146 zf-C4H2: Zinc finger- 43.2 2.9E+02 0.0064 26.1 10.5 44 2-45 1-44 (230)
18 PF12128 DUF3584: Protein of u 43.0 6E+02 0.013 29.6 14.9 53 128-188 963-1017(1201)
19 PF04108 APG17: Autophagy prot 42.9 3.7E+02 0.008 27.4 12.0 44 5-48 244-291 (412)
20 PF06580 His_kinase: Histidine 41.5 1.2E+02 0.0025 23.6 6.4 58 46-106 12-69 (82)
21 cd07637 BAR_ACAP3 The Bin/Amph 36.9 3.4E+02 0.0074 25.0 12.7 69 3-79 3-71 (200)
22 PTZ00464 SNF-7-like protein; P 31.2 4.4E+02 0.0095 24.6 12.5 93 9-102 18-138 (211)
23 cd07648 F-BAR_FCHO The F-BAR ( 30.0 4.7E+02 0.01 24.5 12.6 14 9-22 71-84 (261)
24 KOG2218 ER to golgi transport 29.9 8.1E+02 0.018 27.3 15.5 105 147-253 262-380 (737)
25 PF08385 DHC_N1: Dynein heavy 28.9 6.6E+02 0.014 25.9 14.4 104 6-115 302-418 (579)
26 PRK12803 flagellin; Provisiona 28.4 3.3E+02 0.0071 27.2 8.7 82 17-113 48-131 (335)
27 PF00015 MCPsignal: Methyl-acc 27.8 3.6E+02 0.0077 23.5 8.1 27 5-31 82-108 (213)
28 PRK12807 flagellin; Provisiona 27.4 3.7E+02 0.008 25.8 8.7 83 17-114 48-132 (287)
29 COG4942 Membrane-bound metallo 27.1 7.2E+02 0.016 25.8 12.2 72 2-76 52-126 (420)
30 COG1344 FlgL Flagellin and rel 25.6 3.6E+02 0.0079 26.7 8.5 75 17-106 48-123 (360)
31 PF09577 Spore_YpjB: Sporulati 25.4 3.5E+02 0.0077 25.7 7.9 178 48-255 5-190 (232)
32 PF01702 TGT: Queuine tRNA-rib 25.3 2.3E+02 0.0051 26.2 6.7 47 24-70 189-235 (238)
33 PRK08026 flagellin; Validated 24.4 3.7E+02 0.0081 28.6 8.6 76 16-106 49-125 (529)
34 KOG2346 Uncharacterized conser 24.3 2.7E+02 0.006 29.7 7.4 59 53-114 150-208 (636)
35 PF08771 Rapamycin_bind: Rapam 23.7 4E+02 0.0088 21.7 7.5 83 21-106 16-99 (100)
36 PRK12806 flagellin; Provisiona 23.7 4.1E+02 0.0088 27.9 8.6 82 17-113 50-133 (475)
37 COG5173 SEC6 Exocyst complex s 22.7 3.3E+02 0.0072 29.5 7.6 78 170-255 281-360 (742)
38 COG4477 EzrA Negative regulato 22.3 1E+03 0.022 25.7 11.3 107 2-108 104-242 (570)
39 PRK12808 flagellin; Provisiona 22.1 4.9E+02 0.011 27.4 8.7 27 17-43 48-74 (476)
40 PRK13589 flagellin; Provisiona 22.0 4.6E+02 0.01 28.3 8.6 82 17-113 50-133 (576)
41 PRK13588 flagellin B; Provisio 21.9 4.5E+02 0.0098 27.9 8.6 82 17-113 50-133 (514)
42 COG4817 DNA-binding ferritin-l 21.5 1.1E+02 0.0024 25.8 3.2 28 133-165 68-95 (111)
43 TIGR01639 P_fal_TIGR01639 Plas 21.2 2.2E+02 0.0047 21.2 4.5 36 212-247 9-44 (61)
44 PF08372 PRT_C: Plant phosphor 20.3 83 0.0018 28.1 2.4 27 266-292 42-68 (156)
45 PF04108 APG17: Autophagy prot 20.2 9.2E+02 0.02 24.5 12.3 27 13-39 238-264 (412)
No 1
>PF04100 Vps53_N: Vps53-like, N-terminal ; InterPro: IPR007234 Vps53 complexes with Vps52 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=100.00 E-value=1.6e-88 Score=671.11 Aligned_cols=291 Identities=49% Similarity=0.768 Sum_probs=262.4
Q ss_pred chhHHHHHHHHHhHHHHHHHHHhhhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhc
Q 019917 2 YKIREIKNKAEQSETMVQEICRDIKKLDFAKKHITTTITALHRLTMLVSAVEQLQVMASKRQYKEAAAQLEAVNQLCSHF 81 (334)
Q Consensus 2 ~kI~~Ik~kA~~SE~~V~eIt~DIk~LD~AKrNLT~SIT~LkrL~MLv~av~qL~~~~~~r~Y~e~a~lL~av~~L~~~F 81 (334)
++|.+||++|++||+||++||+|||+||+||||||.|||+||||||||+||++|+.++++|+|+|||++|+||++|++||
T Consensus 71 ~~i~~ik~kA~~sE~~V~~it~dIk~LD~AKrNLT~SIT~LkrL~MLv~a~~qL~~~~~~r~Y~e~a~~L~av~~L~~~F 150 (383)
T PF04100_consen 71 EKISEIKSKAEESEQMVQEITRDIKQLDNAKRNLTQSITTLKRLQMLVTAVEQLKELAKKRQYKEIASLLQAVKELLEHF 150 (383)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCchHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCchhhh-hhHhHhhhhhHHHhcChhHHHHHHHHHHHHhHHHH
Q 019917 82 EAYRDIPKITELREKFKNIKQILKSHVFSDFSSLGTGKETEETN-LLQQLSDACLVVDALEPSVREELVNNFCRRELTSY 160 (334)
Q Consensus 82 ~~YksIp~I~~L~~~~~~i~~~L~~qI~~DF~~~~~~~~~~~~~-~~~~L~~aC~vvD~L~~~~k~~lI~wf~~~~L~eY 160 (334)
++|++||+|++|++++..|++.|+.||+.||+.++++....++. ...+|.+||.|||+||+++|++||+|||++||++|
T Consensus 151 ~~yksi~~I~~L~~~i~~l~~~L~~qI~~df~~~f~~~~~~~~~~~~~~l~~aC~vvd~L~~~~r~~li~wf~~~qL~eY 230 (383)
T PF04100_consen 151 KPYKSIPQIAELSKRIDQLQNELKEQIFEDFEELFGSQGDESPGQSSQQLSDACLVVDALGPDVREELIDWFCNKQLKEY 230 (383)
T ss_pred HcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccccchHhHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999987433322222 45789999999999999999999999999999999
Q ss_pred HHhcC-CcccccccchhhhHHHHHHhhhhhhhhc-CcCCCcccccHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHH
Q 019917 161 EQIFE-GAELAKLDKTERRYAWIKRRIRTNEEIF-KIFPPSWHVPYLLNIQFCKKTRKQLEGILDNLTERPDVGTLLLAL 238 (334)
Q Consensus 161 ~~iF~-~~Ea~~Ldni~RRy~Wfkr~L~~~e~~~-~iFP~~W~v~~~L~~~Fc~~Tr~dL~~lL~~~~~~~dv~~Ll~aL 238 (334)
+++|+ ++|+||||||+|||+||||+|++|++.+ .+||++|+||++||..||.+||+||..+|++.++++||++||+||
T Consensus 231 ~~iF~~~~e~~~Ld~i~RRy~Wfkr~L~~~e~~~~~iFP~~W~v~~~L~~~Fc~~Tr~dL~~iL~~~~~~~dv~~Ll~aL 310 (383)
T PF04100_consen 231 RRIFRENDEAASLDNIDRRYAWFKRLLKNFEEKFANIFPPSWRVPERLCVEFCEITRKDLSEILSKRKSELDVKLLLKAL 310 (383)
T ss_pred HHHHcccccccchhhHHHHHHHHHHHHHHHHhhccccCCCcCcHHHHHHHHHHHHHHHHHHHHHhhcCCCCcHHHHHHHH
Confidence 99997 6899999999999999999999999876 899999999999999999999999999999989999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCCCCcCCcchhhcCCCCCCCCChHHHHHHHHHHHHhccCCCcccccCCCCCCCCCCceeEEEe
Q 019917 239 QRTIEFEDELAEKFGGDSRSSEIGLDIEEIGRPENNRQNVSDIRKKYERKLAANQGNSTEEKDGNKDLSVPGAGVCLHVL 318 (334)
Q Consensus 239 q~Tl~FE~~L~~rF~~~~~~~~~~~d~~~~~~~~~~~~~a~~ir~k~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 318 (334)
|+|++||++|++||+|.+.... . ++...|. .....+|+|+
T Consensus 311 q~T~~FE~~L~~rF~~~~~~~~---~----------------~~~~~e~---------------------~~~~~~f~g~ 350 (383)
T PF04100_consen 311 QKTLEFEKELAKRFAGSTDESQ---E----------------IEKKKEM---------------------KEIAENFKGI 350 (383)
T ss_pred HHHHHHHHHHHHHhcccccccc---c----------------ccccccc---------------------cccccccccc
Confidence 9999999999999987743200 0 0000000 0001169999
Q ss_pred eecCCCcceeeeee
Q 019917 319 FTVPSSTKILIYVS 332 (334)
Q Consensus 319 is~~~~~~~~~~~~ 332 (334)
||+.|+|.|.+||.
T Consensus 351 IS~~FepyL~iyv~ 364 (383)
T PF04100_consen 351 ISSCFEPYLSIYVD 364 (383)
T ss_pred hHHhhHhhHHHHHH
Confidence 99999999999985
No 2
>KOG2180 consensus Late Golgi protein sorting complex, subunit Vps53 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.1e-86 Score=676.12 Aligned_cols=292 Identities=52% Similarity=0.813 Sum_probs=270.5
Q ss_pred CchhHHHHHHHHHhHHHHHHHHHhhhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHh
Q 019917 1 MYKIREIKNKAEQSETMVQEICRDIKKLDFAKKHITTTITALHRLTMLVSAVEQLQVMASKRQYKEAAAQLEAVNQLCSH 80 (334)
Q Consensus 1 ~~kI~~Ik~kA~~SE~~V~eIt~DIk~LD~AKrNLT~SIT~LkrL~MLv~av~qL~~~~~~r~Y~e~a~lL~av~~L~~~ 80 (334)
+++|++||++|++||.||++||+|||+||+||||||+|||+|+||||||+||++|+.|+++|+|+|+|++|+||++|++|
T Consensus 85 ~~~i~eiks~ae~Te~~V~eiTrdIKqLD~AKkNLTtSiT~L~~L~MLv~~vesL~~l~~kr~y~e~a~~lqai~~ll~~ 164 (793)
T KOG2180|consen 85 FQKIQEIKSVAESTEAMVQEITRDIKQLDFAKKNLTTSITTLHRLHMLVTGVESLNALLSKRSYGEAASPLQAILQLLNH 164 (793)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHhHHHHHHHHHHH
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCchHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCc-hhhhhhHhHhhhhhHHHhcChhHHHHHHHHHHHHhHHH
Q 019917 81 FEAYRDIPKITELREKFKNIKQILKSHVFSDFSSLGTGKET-EETNLLQQLSDACLVVDALEPSVREELVNNFCRRELTS 159 (334)
Q Consensus 81 F~~YksIp~I~~L~~~~~~i~~~L~~qI~~DF~~~~~~~~~-~~~~~~~~L~~aC~vvD~L~~~~k~~lI~wf~~~~L~e 159 (334)
|++|++||+|++|++.++.+|..|..||+.||+++|+|++. ..+...+.|.|||+|+|+|+|++|+++|+|||.+||.+
T Consensus 165 F~~Yk~v~~I~~Ls~si~~~k~~l~~qi~~df~~~F~~~~~~~~~~~l~~l~daC~v~d~lepsvreelIkwf~~qqL~e 244 (793)
T KOG2180|consen 165 FIAYKSVDEIANLSESIDKLKKSLLSQIFQDFKAAFSGGETHEEALLLQKLSDACLVVDALEPSVREELIKWFCSQQLEE 244 (793)
T ss_pred HHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998777 33445688999999999999999999999999999999
Q ss_pred HHHhcCC-cccccccchhhhHHHHHHhhhhhhhhc-CcCCCcccccHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHH
Q 019917 160 YEQIFEG-AELAKLDKTERRYAWIKRRIRTNEEIF-KIFPPSWHVPYLLNIQFCKKTRKQLEGILDNLTERPDVGTLLLA 237 (334)
Q Consensus 160 Y~~iF~~-~Ea~~Ldni~RRy~Wfkr~L~~~e~~~-~iFP~~W~v~~~L~~~Fc~~Tr~dL~~lL~~~~~~~dv~~Ll~a 237 (334)
|.+||++ .|+|||||++|||+||||.|++|++.| .|||++|+|++|||.+||+.||+||..||.++.+++||++||.|
T Consensus 245 y~~IF~en~E~a~LDkidrRY~wfKr~L~~fe~k~~~iFP~dW~v~~RLt~eFc~~Tr~~L~~Il~~~~~~~~v~lll~A 324 (793)
T KOG2180|consen 245 YEQIFRENEEAASLDKLDRRYAWFKRLLRDFEEKWKPIFPADWHVAYRLTIEFCHQTRKQLESILKRRKKEPDVKLLLFA 324 (793)
T ss_pred HHHHHhccHhhhhhhhHHHHHHHHHHHHHHHHHhccccCCcccchhHHHHHHHHHHHHHHHHHHHHHhhhCccHHHHHHH
Confidence 9999985 899999999999999999999999999 69999999999999999999999999999998899999999999
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCcCCcchhhcCCCCCCCCChHHHHHHHHHHHHhccCCCcccccCCCCCCCCCCceeEEE
Q 019917 238 LQRTIEFEDELAEKFGGDSRSSEIGLDIEEIGRPENNRQNVSDIRKKYERKLAANQGNSTEEKDGNKDLSVPGAGVCLHV 317 (334)
Q Consensus 238 Lq~Tl~FE~~L~~rF~~~~~~~~~~~d~~~~~~~~~~~~~a~~ir~k~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 317 (334)
||+|++||++|++||+|++.. |++.++++.- |.+.|+|+|
T Consensus 325 lq~TleFE~~L~kRF~g~~~~----------~~~~~ns~~~------------------------------~k~~~~f~~ 364 (793)
T KOG2180|consen 325 LQSTLEFEKFLDKRFSGGTLT----------GKPEKNSQFE------------------------------PKERFNFEG 364 (793)
T ss_pred HHHHHHHHHHHHHHhcCCCCC----------CCCccccccc------------------------------cccccchhh
Confidence 999999999999999998754 2222222111 113388999
Q ss_pred eeecCCCcceeeeee
Q 019917 318 LFTVPSSTKILIYVS 332 (334)
Q Consensus 318 ~is~~~~~~~~~~~~ 332 (334)
+|||-|.|..++|+.
T Consensus 365 ~isScFEPhLtlyI~ 379 (793)
T KOG2180|consen 365 AISSCFEPHLTLYIE 379 (793)
T ss_pred HHHHhcccchhhhhh
Confidence 999999999999974
No 3
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=97.56 E-value=0.0071 Score=58.26 Aligned_cols=153 Identities=14% Similarity=0.275 Sum_probs=109.5
Q ss_pred chhHHHHHHHHHhHHHHHHHHHhhh--------------hHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHH
Q 019917 2 YKIREIKNKAEQSETMVQEICRDIK--------------KLDFAKKHITTTITALHRLTMLVSAVEQLQVMASKRQYKEA 67 (334)
Q Consensus 2 ~kI~~Ik~kA~~SE~~V~eIt~DIk--------------~LD~AKrNLT~SIT~LkrL~MLv~av~qL~~~~~~r~Y~e~ 67 (334)
+.|.+|++....+-..|+.+=+.++ ++..-|+||......|+.+..+..+...|+.++...+|..|
T Consensus 67 ~~v~el~~~l~~a~~~~~~~R~~L~~~~~~~~~~~L~Il~~~rkr~~l~~ll~~L~~i~~v~~~~~~l~~ll~~~dy~~A 146 (291)
T PF10475_consen 67 SSVQELQDELEEALVICKNLRRNLKSADENLTKSGLEILRLQRKRQNLKKLLEKLEQIKTVQQTQSRLQELLEEGDYPGA 146 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHH
Confidence 3456666666666655555544443 34444677777889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCchhhhhhHhHhhhhhHHHhcChhHHHH
Q 019917 68 AAQLEAVNQLCSHFEAYRDIPKITELREKFKNIKQILKSHVFSDFSSLGTGKETEETNLLQQLSDACLVVDALEPSVREE 147 (334)
Q Consensus 68 a~lL~av~~L~~~F~~YksIp~I~~L~~~~~~i~~~L~~qI~~DF~~~~~~~~~~~~~~~~~L~~aC~vvD~L~~~~k~~ 147 (334)
..++..+.++++. |+.+.-++.|..++..+...+..++-.+|...-. .-++.....+-+|...++- -..+.++
T Consensus 147 l~li~~~~~~l~~---l~~~~c~~~L~~~L~e~~~~i~~~ld~~l~~~~~---~Fd~~~Y~~v~~AY~lLgk-~~~~~dk 219 (291)
T PF10475_consen 147 LDLIEECQQLLEE---LKGYSCVRHLSSQLQETLELIEEQLDSDLSKVCQ---DFDPDKYSKVQEAYQLLGK-TQSAMDK 219 (291)
T ss_pred HHHHHHHHHHHHh---cccchHHHHHhHHHHHHHHHHHHHHHHHHHHHHH---hCCHHHHHHHHHHHHHHhh-hHHHHHH
Confidence 9999999999965 5556677778888888888888878777776421 1123345677788877763 2457777
Q ss_pred HHHHHHHHhHHHHH
Q 019917 148 LVNNFCRRELTSYE 161 (334)
Q Consensus 148 lI~wf~~~~L~eY~ 161 (334)
+...|++-....-.
T Consensus 220 l~~~f~~~i~~~~~ 233 (291)
T PF10475_consen 220 LQMHFTSAIHSTTF 233 (291)
T ss_pred HHHHHHHHHHHHHH
Confidence 77777765544433
No 4
>PF10191 COG7: Golgi complex component 7 (COG7); InterPro: IPR019335 The conserved oligomeric Golgi (COG) complex is an eight-subunit (Cog1-8) peripheral Golgi protein involved in membrane trafficking and glycoconjugate synthesis []. COG7 is required for normal Golgi morphology and trafficking. Mutation in COG7 causes a congenital disorder of glycosylation [].
Probab=96.83 E-value=0.36 Score=52.79 Aligned_cols=239 Identities=13% Similarity=0.232 Sum_probs=155.4
Q ss_pred hhHHHHHHHHHhHHHHHHHHHhhhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhcc
Q 019917 3 KIREIKNKAEQSETMVQEICRDIKKLDFAKKHITTTITALHRLTMLVSAVEQLQVMASKRQYKEAAAQLEAVNQLCSHFE 82 (334)
Q Consensus 3 kI~~Ik~kA~~SE~~V~eIt~DIk~LD~AKrNLT~SIT~LkrL~MLv~av~qL~~~~~~r~Y~e~a~lL~av~~L~~~F~ 82 (334)
++..|+++...-|..-..--.-+.+||.+|.++..+-.+|+==.-+.+...++..+....+|..+|.-|..|.+=+..|.
T Consensus 85 ~~~~v~~~~~~~e~~t~~s~~~L~~ld~vK~rm~~a~~~L~EA~~w~~l~~~v~~~~~~~d~~~~a~~l~~m~~sL~~l~ 164 (766)
T PF10191_consen 85 QMASVQEEIKAVEQDTAQSMAQLAELDSVKSRMEAARETLQEADNWSTLSAEVDDLFESGDIAKIADRLAEMQRSLAVLQ 164 (766)
T ss_pred HHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHc
Confidence 34445554433333222233447889999999999999999888888888888889999999999999999999888874
Q ss_pred cCCCchHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCchhhhhhHhHhhhhhHHHhcChhHHHHHHHHHHHHhHHHHHH
Q 019917 83 AYRDIPKITELREKFKNIKQILKSHVFSDFSSLGTGKETEETNLLQQLSDACLVVDALEPSVREELVNNFCRRELTSYEQ 162 (334)
Q Consensus 83 ~YksIp~I~~L~~~~~~i~~~L~~qI~~DF~~~~~~~~~~~~~~~~~L~~aC~vvD~L~~~~k~~lI~wf~~~~L~eY~~ 162 (334)
++|.-.+=...++.+++.|...+-...-..+.... ....+....|...+|.. .++.++|+.-.......
T Consensus 165 ---~~pd~~~r~~~le~l~nrLEa~vsp~Lv~al~~~~------~~~~~~~~~if~~i~R~--~~l~~~Y~~~r~~~l~~ 233 (766)
T PF10191_consen 165 ---DVPDYEERRQQLEALKNRLEALVSPQLVQALNSRD------VDAAKEYVKIFSSIGRE--PQLEQYYCKCRKAPLQR 233 (766)
T ss_pred ---CCCchhHHHHHHHHHHHHHHHHhhHHHHHHHHhcC------HHHHHHHHHHHHHcCCH--HHHHHHHHHHHHHHHHH
Confidence 67777777777777777777665444333332111 12333444566666532 45566666655555555
Q ss_pred hcCC---cc--cccccchhhhHHHHHHhhhhhh-h-hc--CcCCCccc-ccHHHHHHHHHHH---HHHHHHHHHhccCCC
Q 019917 163 IFEG---AE--LAKLDKTERRYAWIKRRIRTNE-E-IF--KIFPPSWH-VPYLLNIQFCKKT---RKQLEGILDNLTERP 229 (334)
Q Consensus 163 iF~~---~E--a~~Ldni~RRy~Wfkr~L~~~e-~-~~--~iFP~~W~-v~~~L~~~Fc~~T---r~dL~~lL~~~~~~~ 229 (334)
.... .+ ....+-+. .|+-.+|...+ + .| .+||..-. ++.-++..++.++ ...|...+.......
T Consensus 234 ~W~~~~~~~~~~~~~~~L~---~fyd~ll~~l~~E~~w~~~vF~~~~~~~~~ll~~~L~~L~PS~~~~l~~al~~~~~~~ 310 (766)
T PF10191_consen 234 LWQEYCQSDQSQSFAEWLP---SFYDELLSLLHQELKWCSQVFPDESPVLPKLLAETLSALQPSFPSRLSSALKRAGPET 310 (766)
T ss_pred HHHHHhhhccchhHHHHHH---HHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhcCccHHHHHHHHHhhcCchh
Confidence 5321 11 11111122 35555565543 3 45 69999876 4444556666555 445566665333333
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHhCCC
Q 019917 230 DVGTLLLALQRTIEFEDELAEKFGGD 255 (334)
Q Consensus 230 dv~~Ll~aLq~Tl~FE~~L~~rF~~~ 255 (334)
....|+..-+.|..|=+.+...|...
T Consensus 311 ~L~~L~~l~~~t~~Fa~~l~~~l~~~ 336 (766)
T PF10191_consen 311 KLETLIELYQATEHFARNLEHLLSSL 336 (766)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 47899999999999999999999975
No 5
>PF06248 Zw10: Centromere/kinetochore Zw10; InterPro: IPR009361 Zeste white 10 (ZW10) was initially identified as a mitotic checkpoint protein involved in chromosome segregation, and then implicated in targeting cytoplasmic dynein and dynactin to mitotic kinetochores, but it is also important in non-dividing cells. These include cytoplasmic dynein targeting to Golgi and other membranes, and SNARE-mediated ER-Golgi trafficking [, ]. Dominant-negative ZW10, anti-ZW10 antibody, and ZW10 RNA interference (RNAi) cause Golgi dispersal. ZW10 RNAi also disperse endosomes and lysosomes []. Drosophila kinetochore components Rough deal (Rod) and Zw10 are required for the proper functioning of the metaphase checkpoint in flies []. The eukaryotic spindle assembly checkpoint (SAC) monitors microtubule attachment to kinetochores and prevents anaphase onset until all kinetochores are aligned on the metaphase plate. It is an essential surveillance mechanism that ensures high fidelity chromosome segregation during mitosis. In higher eukaryotes, cytoplasmic dynein is involved in silencing the SAC by removing the checkpoint proteins Mad2 and the Rod-Zw10-Zwilch complex (RZZ) from aligned kinetochores [, , ].; GO: 0007067 mitosis, 0000775 chromosome, centromeric region, 0005634 nucleus
Probab=96.81 E-value=0.9 Score=48.00 Aligned_cols=214 Identities=14% Similarity=0.221 Sum_probs=137.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhc--ccCCCchHHHHHHHHHHHHHHHHHHHHHH
Q 019917 33 KHITTTITALHRLTMLVSAVEQLQVMASKRQYKEAAAQLEAVNQLCSHF--EAYRDIPKITELREKFKNIKQILKSHVFS 110 (334)
Q Consensus 33 rNLT~SIT~LkrL~MLv~av~qL~~~~~~r~Y~e~a~lL~av~~L~~~F--~~YksIp~I~~L~~~~~~i~~~L~~qI~~ 110 (334)
+..+..+.+|++|+-+-.++++.+.....++|-++|..|..+..++..- .++.+..-+..|..++...++.|..++-.
T Consensus 93 ~~~~~~l~~L~~L~~i~~~l~~~~~al~~~~~~~Aa~~L~~~~~~L~~l~~~~~~~~~i~~~Lk~e~~~lr~~L~~~L~~ 172 (593)
T PF06248_consen 93 EENEQLLEVLEQLQEIDELLEEVEEALKEGNYLDAADLLEELKSLLDDLKSSKFEELKILKLLKDEYSELRENLQYQLSE 172 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCcCcccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445677788899999999999999999999999999999999999886 34556677788889999999999999988
Q ss_pred hhhhcCC---CCC------c----------hhhhh--hHhHhhhhhHHHhcChhHHHHHHHHHHHHhHHHHHH-----hc
Q 019917 111 DFSSLGT---GKE------T----------EETNL--LQQLSDACLVVDALEPSVREELVNNFCRRELTSYEQ-----IF 164 (334)
Q Consensus 111 DF~~~~~---~~~------~----------~~~~~--~~~L~~aC~vvD~L~~~~k~~lI~wf~~~~L~eY~~-----iF 164 (334)
.|+.... .+. . .++.. ...+-.|+.+++.|+... +.+-+.++++.+.+.-. .+
T Consensus 173 ~w~~lv~~~~~~~k~~~~~~~~~~v~l~vs~~~~~~~L~~vl~AL~~lg~L~~~l-~~~~~~Ll~~ii~PlI~~p~~~~~ 251 (593)
T PF06248_consen 173 EWERLVQWDSPSSKQLSSPESTLKVTLHVSKSESQESLQDVLQALEILGILDYKL-KKFSKFLLEHIIKPLISHPSSIVS 251 (593)
T ss_pred HHHhheeecCCCcccccccccceEEEEEeecCcccchHHHHHHHHHHhCchhHHH-HHHHHHHHHHHHHHHhcCCCCccc
Confidence 8886431 001 0 00111 233446666666665432 33444444444444221 11
Q ss_pred CC-ccc-c--------------cccchhhhHHHHHHhhhhhhhhcCcCCCcccccHHHHHHHHHHHHHHHHHHH-Hhc-c
Q 019917 165 EG-AEL-A--------------KLDKTERRYAWIKRRIRTNEEIFKIFPPSWHVPYLLNIQFCKKTRKQLEGIL-DNL-T 226 (334)
Q Consensus 165 ~~-~Ea-~--------------~Ldni~RRy~Wfkr~L~~~e~~~~iFP~~W~v~~~L~~~Fc~~Tr~dL~~lL-~~~-~ 226 (334)
.. .+. + .--+.+--|.=+..++.-..+....-|..|. .|...|-..+..+|...| .+. .
T Consensus 252 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~V~~~l~~vf~fL~~~L~~~~~~~~---~l~~~~g~~i~~~ls~~lI~~~L~ 328 (593)
T PF06248_consen 252 VEESEDGSVEITLSYEPDSSKDKRPSPKEVFSNLLLVFEFLHQHLLSLPSSDS---SLSESFGDHIWPRLSELLISNCLS 328 (593)
T ss_pred ccccCCCcceEEEEeecccccccCCCHHHHHHHHHHHHHHHHHHhcccCCchh---HHHHHHHHHHHHHHHHHHHHhhCc
Confidence 10 011 0 1113445576676666665554433466676 788888888888886555 322 2
Q ss_pred C--CCC---HHHHHHHHHHHHHHHHHHHH
Q 019917 227 E--RPD---VGTLLLALQRTIEFEDELAE 250 (334)
Q Consensus 227 ~--~~d---v~~Ll~aLq~Tl~FE~~L~~ 250 (334)
. +-+ ...+-..+..|.+||+.|..
T Consensus 329 ~aiP~~~~~l~~f~~v~~~~~~Fe~~L~~ 357 (593)
T PF06248_consen 329 PAIPTSASELQEFEEVLESVEEFEEALKE 357 (593)
T ss_pred CcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 112 34567788999999999885
No 6
>PF15469 Sec5: Exocyst complex component Sec5
Probab=95.14 E-value=1.9 Score=38.40 Aligned_cols=107 Identities=12% Similarity=0.281 Sum_probs=81.6
Q ss_pred HHHHHHHHhHHHHHHHHHhhhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhcccCC
Q 019917 6 EIKNKAEQSETMVQEICRDIKKLDFAKKHITTTITALHRLTMLVSAVEQLQVMASKRQYKEAAAQLEAVNQLCSHFEAYR 85 (334)
Q Consensus 6 ~Ik~kA~~SE~~V~eIt~DIk~LD~AKrNLT~SIT~LkrL~MLv~av~qL~~~~~~r~Y~e~a~lL~av~~L~~~F~~Yk 85 (334)
.+.+...++...-..+-+.+-.--.--.++-.++..|+|.+-|.+.=.+|+..+++++|..+..-+.-++.+. +.|+
T Consensus 44 ~L~~~l~~~~~~~~~~~~pll~~~~k~~~l~~~l~~l~r~~flF~LP~~L~~~i~~~dy~~~i~dY~kak~l~---~~~~ 120 (182)
T PF15469_consen 44 KLEESLNEASSKANSVFKPLLERREKADKLRNALEFLQRNRFLFNLPSNLRECIKKGDYDQAINDYKKAKSLF---EKYK 120 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHcCcHHHHHHHHHHHHHHH---HHhh
Confidence 3344444444444444444444444446888999999999999999999999999999999999997777765 4555
Q ss_pred -CchHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 019917 86 -DIPKITELREKFKNIKQILKSHVFSDFSSL 115 (334)
Q Consensus 86 -sIp~I~~L~~~~~~i~~~L~~qI~~DF~~~ 115 (334)
.++-+..++.+++.+-..++.++...+...
T Consensus 121 ~~~~vf~~v~~eve~ii~~~r~~l~~~L~~~ 151 (182)
T PF15469_consen 121 QQVPVFQKVWSEVEKIIEEFREKLWEKLLSP 151 (182)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 889999999999999999999887765543
No 7
>PF07393 Sec10: Exocyst complex component Sec10; InterPro: IPR009976 This family contains the Sec10 component (approximately 650 residues long) of the eukaryotic exocyst complex, which specifically affects the synthesis and delivery of secretory and basolateral plasma membrane proteins [].; GO: 0006887 exocytosis, 0048278 vesicle docking, 0005737 cytoplasm
Probab=92.38 E-value=19 Score=39.03 Aligned_cols=239 Identities=15% Similarity=0.241 Sum_probs=155.0
Q ss_pred hHHHHHHHHHhHHHHHHHHHhhhhHhhhhhhHHHHHHHHHHHHHHHHH--HHHHHHHH-hhc---CHHHHHHHHHHHHHH
Q 019917 4 IREIKNKAEQSETMVQEICRDIKKLDFAKKHITTTITALHRLTMLVSA--VEQLQVMA-SKR---QYKEAAAQLEAVNQL 77 (334)
Q Consensus 4 I~~Ik~kA~~SE~~V~eIt~DIk~LD~AKrNLT~SIT~LkrL~MLv~a--v~qL~~~~-~~r---~Y~e~a~lL~av~~L 77 (334)
.+.+-.+-...-..|..|..-...++.-+..-..++..++.++-+.+. ...|..+. .-. +-.++|..+.-+..+
T Consensus 8 f~~Ld~~i~~v~~~~~~iG~~Le~~~~~r~ra~~a~~Li~~y~ef~~~~~~~~l~~l~~~~~~~~~~~~~A~il~~L~~l 87 (710)
T PF07393_consen 8 FQQLDERISEVSQKAVHIGDQLESADRQRSRAIEAIELIPYYNEFLSKGSYSNLEKLFRTFTDPEDPEEAAKILRNLLRL 87 (710)
T ss_pred HHHHHHHHhHHHHHHhchhhhhhhhhHHHHHHHHHHHHHHHHHHHHcCCCccchHHHhhcccCccchHHHHHHHHHHHHH
Confidence 344555555556667777777788888888888899999999977664 35666663 222 336777777655555
Q ss_pred HHhcccCCCchHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCchhhhhhHhHhhhhhHHHhcChhHHHHHHHHHHHHhH
Q 019917 78 CSHFEAYRDIPKITELREKFKNIKQILKSHVFSDFSSLGTGKETEETNLLQQLSDACLVVDALEPSVREELVNNFCRREL 157 (334)
Q Consensus 78 ~~~F~~YksIp~I~~L~~~~~~i~~~L~~qI~~DF~~~~~~~~~~~~~~~~~L~~aC~vvD~L~~~~k~~lI~wf~~~~L 157 (334)
..-.. ++|......+.+......+-..+...|+.....+. ...|+.+-.++-.++... .+|+.|+++.-
T Consensus 88 s~~~~---~~~~~~~~~~~I~~~~e~fE~~LL~eFe~ay~~~d------~~~M~~~A~vL~~fngg~--~~i~~fi~k~~ 156 (710)
T PF07393_consen 88 SKELS---DIPGFEEARENIEKYCEIFENALLREFEIAYREGD------YERMKEFAKVLLEFNGGS--SCIDFFINKHE 156 (710)
T ss_pred HHhcC---CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC------HHHHHHHHHHHHHcCCCc--HHHHHHHHhCh
Confidence 54333 88888888999999999999999999998764322 367888888888888766 68888888642
Q ss_pred HHH--HHh---------------cCCcc--cccccchhhhHHHHHHhhhhhhhhc-CcCCCcccccHHHHHHHHHHHHHH
Q 019917 158 TSY--EQI---------------FEGAE--LAKLDKTERRYAWIKRRIRTNEEIF-KIFPPSWHVPYLLNIQFCKKTRKQ 217 (334)
Q Consensus 158 ~eY--~~i---------------F~~~E--a~~Ldni~RRy~Wfkr~L~~~e~~~-~iFP~~W~v~~~L~~~Fc~~Tr~d 217 (334)
--+ ..+ ..+++ ....+.++.=|..++..++.-...- .|||+.=.|=..++..++.--=.+
T Consensus 157 ~f~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~l~~~~~~i~~~i~~e~~iI~~VFp~~~~Vm~~fiervf~~~I~~ 236 (710)
T PF07393_consen 157 FFIDEDQLDESNGFEDEEIWEKLSDPDSHPPINEESLDAFFEDIRDVINEESKIIDRVFPNPEPVMQKFIERVFEQVIQE 236 (710)
T ss_pred hhhhhhhhccccccchhHHHHhccCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHH
Confidence 222 111 11111 1223345555566666655543333 799997777777666666544333
Q ss_pred -HHHHHHhccCCCCHHHHHHHHH----HHHHHHHHHHHHhCC
Q 019917 218 -LEGILDNLTERPDVGTLLLALQ----RTIEFEDELAEKFGG 254 (334)
Q Consensus 218 -L~~lL~~~~~~~dv~~Ll~aLq----~Tl~FE~~L~~rF~~ 254 (334)
+..+|... ...+...++.+|+ .|..|=..|..-+.+
T Consensus 237 ~i~~lL~~a-~~~s~~~YLr~l~~~y~~t~~lv~~L~~~~~~ 277 (710)
T PF07393_consen 237 YIESLLEEA-SSISTLAYLRTLHGLYSQTKKLVDDLKEFFSG 277 (710)
T ss_pred HHHHHHHhh-ccCCHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 45666533 3456666676665 566666666666443
No 8
>KOG2115 consensus Vacuolar sorting protein VPS45 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.36 E-value=8.1 Score=42.93 Aligned_cols=113 Identities=14% Similarity=0.331 Sum_probs=92.7
Q ss_pred hhHHHHHHHHHhHHHHHHHHHhhhhHh--------------hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHH
Q 019917 3 KIREIKNKAEQSETMVQEICRDIKKLD--------------FAKKHITTTITALHRLTMLVSAVEQLQVMASKRQYKEAA 68 (334)
Q Consensus 3 kI~~Ik~kA~~SE~~V~eIt~DIk~LD--------------~AKrNLT~SIT~LkrL~MLv~av~qL~~~~~~r~Y~e~a 68 (334)
..++|+.++.++=+-|+++-..|+.+| .+.+|++..-.-|+=+.-+-.+...++.+++..+|-+|.
T Consensus 276 ~~~~Lq~~~~d~~~~vk~Lre~i~~vd~~~~~~s~~Ile~~~~r~n~~kL~~kL~~i~~V~~~q~~vq~ll~~~d~~~AL 355 (951)
T KOG2115|consen 276 SLHNLQKELRDTMSEVKELRENIKEVDAENVRKSIKILELALTRKNVEKLLQKLRLIATVHQAQSTVQLLLSTQDFVGAL 355 (951)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcccHHHHH
Confidence 456778888888888887777777766 466777777777777777778888999999999999999
Q ss_pred HHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHHHHHHHhhhhcC
Q 019917 69 AQLEAVNQLCSHFEAYRDIPKITELREKFKNIKQILKSHVFSDFSSLG 116 (334)
Q Consensus 69 ~lL~av~~L~~~F~~YksIp~I~~L~~~~~~i~~~L~~qI~~DF~~~~ 116 (334)
+++.-+.+++.- ...-+|+.+..|...+..+...+..-+..+|..+.
T Consensus 356 dlI~t~q~~L~g-~eL~gl~sfrhL~~ql~el~~tI~~m~t~eF~~~~ 402 (951)
T KOG2115|consen 356 DLIKTIQELLKG-SELLGLHSFRHLRSQLLELYKTIDKMLTREFSTYS 402 (951)
T ss_pred HHHHHHHHHHhh-hhhcCchhHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999876 77788999999999998888888877888998654
No 9
>KOG2176 consensus Exocyst complex, subunit SEC15 [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.85 E-value=12 Score=41.08 Aligned_cols=67 Identities=19% Similarity=0.202 Sum_probs=51.6
Q ss_pred HHHHHHHHHhHHHHHHHHHhhhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHH
Q 019917 5 REIKNKAEQSETMVQEICRDIKKLDFAKKHITTTITALHRLTMLVSAVEQLQVMASKRQYKEAAAQL 71 (334)
Q Consensus 5 ~~Ik~kA~~SE~~V~eIt~DIk~LD~AKrNLT~SIT~LkrL~MLv~av~qL~~~~~~r~Y~e~a~lL 71 (334)
.+...+-.++-.-+.....|+.+.-.-+||+|.+|..++.=--....+..|+++++.|+|=-+-..+
T Consensus 97 sd~N~rLQ~~g~eLiv~~e~lv~~r~~~rnit~ai~~l~~Cl~vLEl~sK~~e~~s~kqyy~aLktl 163 (800)
T KOG2176|consen 97 SDTNRRLQESGKELIVKKEDLVRCRTQSRNITEAIELLTLCLPVLELYSKLQEQMSEKQYYPALKTL 163 (800)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 3344444455556666788889999999999999999999777778888999999999996544333
No 10
>KOG0412 consensus Golgi transport complex COD1 protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.62 E-value=51 Score=36.10 Aligned_cols=96 Identities=16% Similarity=0.278 Sum_probs=75.7
Q ss_pred HHHHHhhhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHH------HhcccCCCchHHHH
Q 019917 19 QEICRDIKKLDFAKKHITTTITALHRLTMLVSAVEQLQVMASKRQYKEAAAQLEAVNQLC------SHFEAYRDIPKITE 92 (334)
Q Consensus 19 ~eIt~DIk~LD~AKrNLT~SIT~LkrL~MLv~av~qL~~~~~~r~Y~e~a~lL~av~~L~------~~F~~YksIp~I~~ 92 (334)
..+..+|++||.||.=+-.++.--+-+.-|-++.+-+...+...+|..+|.++.-...|- .+++.-....+|..
T Consensus 101 e~Vs~kVr~lDla~~Rv~~clq~v~dvrdlk~C~~gv~~Al~seDyE~AA~~IhRflslD~~~i~~~~~~~~~~ts~i~~ 180 (773)
T KOG0412|consen 101 ETVSGKVRALDLAQNRVNECLQRVDDVRDLKNCIEGVDTALESEDYEKAATHIHRFLSLDQALIESRFAKQVVPTSEISD 180 (773)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHhhhhhhccCCchhhhh
Confidence 456689999999999888888777778888889999999999999999999887765542 35666777888877
Q ss_pred HHHHHHHHHHHHHHHHHHhhhh
Q 019917 93 LREKFKNIKQILKSHVFSDFSS 114 (334)
Q Consensus 93 L~~~~~~i~~~L~~qI~~DF~~ 114 (334)
=.+.+.+.+..|..-+.+.|..
T Consensus 181 ~~~~L~~a~e~L~~l~~~~f~e 202 (773)
T KOG0412|consen 181 PYETLKEAKERLSKLFKERFTE 202 (773)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777655555544
No 11
>PF03357 Snf7: Snf7; InterPro: IPR005024 This is a family of eukaryotic proteins which are variously described as either hypothetical protein, developmental protein or related to yeast SNF7. The family contains human CHMP1. CHMP1 (CHromatin Modifying Protein; CHarged Multivesicular body Protein), is encoded by an alternative open reading frame in the PRSM1 gene [] and is conserved in both complex and simple eukaryotes. CHMP1 contains a predicted bipartite nuclear localisation signal and distributes as distinct forms to the cytoplasm and the nuclear matrix in all cell lines tested. Human CHMP1 is strongly implicated in multivesicular body formation. A multivesicular body is a vesicle-filled endosome that targets proteins to the interior of lysosomes. Immunocytochemistry and biochemical fractionation localise CHMP1 to early endosomes and CHMP1 physically interacts with SKD1/VPS4, a highly conserved protein directly linked to multivesicular body sorting in yeast. Similar to the action of a mutant SKD1 protein, over expression of a fusion derivative of human CHMP1 dilates endosomal compartments and disrupts the normal distribution of several endosomal markers. Genetic studies in Saccharomyces cerevisiae (Baker's yeast) further support a conserved role of CHMP1 in vesicle trafficking. Deletion of CHM1, the budding yeast homologue of CHMP1, results in defective sorting of carboxypeptidases S and Y and produces abnormal, multi-lamellar prevacuolar compartments. This phenotype classifies CHM1 as a member of the class E vacuolar protein sorting genes []. ; GO: 0015031 protein transport; PDB: 2V6X_B 2W2U_D 2GD5_D 3FRT_B 3FRV_A 4ABM_D 3EAB_H 3HTU_D.
Probab=66.68 E-value=40 Score=28.92 Aligned_cols=42 Identities=10% Similarity=0.203 Sum_probs=24.1
Q ss_pred cCHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHH
Q 019917 62 RQYKEAAAQLEAVNQLCSHFEAYRDIPKITELREKFKNIKQI 103 (334)
Q Consensus 62 r~Y~e~a~lL~av~~L~~~F~~YksIp~I~~L~~~~~~i~~~ 103 (334)
....+++..|......+.-..+..+++.|..+...+......
T Consensus 78 ~~~~~v~~al~~~~~~Lk~~~~~i~~~~v~~~~d~~~e~~e~ 119 (171)
T PF03357_consen 78 QSNQQVVKALKQSSKALKKINKQINLDKVEKLMDDFQEEMED 119 (171)
T ss_dssp HHHHHHSSS----SHHHHHHHHSTTSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Confidence 444555555655666665556666788888877777665543
No 12
>PF04924 Pox_A6: Poxvirus A6 protein ; InterPro: IPR007008 This is a family of poxvirus A6 proteins have no known function.
Probab=63.74 E-value=1.5e+02 Score=29.80 Aligned_cols=46 Identities=20% Similarity=0.472 Sum_probs=30.8
Q ss_pred hHHHHHHHHHHHH------hHHHHHHhcC-Ccc-------------cccccchhhhHH-HHHHhhhh
Q 019917 143 SVREELVNNFCRR------ELTSYEQIFE-GAE-------------LAKLDKTERRYA-WIKRRIRT 188 (334)
Q Consensus 143 ~~k~~lI~wf~~~------~L~eY~~iF~-~~E-------------a~~Ldni~RRy~-Wfkr~L~~ 188 (334)
.+-=++|.-|-+. -|+||+++|. ++| .++.+....||. |||++|-+
T Consensus 178 NYllKiIAvFds~LvtDK~KL~EYreiftiS~es~i~GIrCisdlei~si~~~nnKYv~FfKKiL~~ 244 (371)
T PF04924_consen 178 NYLLKIIAVFDSDLVTDKEKLEEYREIFTISTESIIHGIRCISDLEIPSIDIDNNKYVSFFKKILSN 244 (371)
T ss_pred hhHHHHHHHHhhhhhhchhhHHHHHHHHhhhHHHHHHHhhhhhcccccceecccchHHHHHHHHhCc
Confidence 3444455554433 4899999997 554 457777777885 77888766
No 13
>PF07138 DUF1386: Protein of unknown function (DUF1386); InterPro: IPR009815 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf11; it is a family of uncharacterised viral proteins.
Probab=62.56 E-value=44 Score=32.95 Aligned_cols=157 Identities=18% Similarity=0.231 Sum_probs=97.2
Q ss_pred hhcCHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCchhhhhhHhHhhhhhHHHh
Q 019917 60 SKRQYKEAAAQLEAVNQLCSHFEAYRDIPKITELREKFKNIKQILKSHVFSDFSSLGTGKETEETNLLQQLSDACLVVDA 139 (334)
Q Consensus 60 ~~r~Y~e~a~lL~av~~L~~~F~~YksIp~I~~L~~~~~~i~~~L~~qI~~DF~~~~~~~~~~~~~~~~~L~~aC~vvD~ 139 (334)
--++|+|--.++..|.+-+++ .| |....-+...+..-+.. ..|.. -..+||.++|+
T Consensus 19 ~h~~yGEsyhlyRIv~E~lt~--sY--v~~~Sci~Rdi~taRrl------------~~G~~--------~fd~A~~~lD~ 74 (324)
T PF07138_consen 19 VHKRYGESYHLYRIVQEHLTN--SY--VGGASCIERDIATARRL------------NSGEL--------SFDDARQCLDA 74 (324)
T ss_pred HHhhcchHHHHHHHHHHHHHH--hh--cCCchHHHHHHHHHHHH------------hcCCC--------cHHHHHHHhcc
Confidence 356899999999999998876 44 22222333344444431 11211 23489999999
Q ss_pred cChhHHHHHHHHHHH-----------HhHHHHH-------------HhcC-Ccc-------cccccchhhhHHHHHHhhh
Q 019917 140 LEPSVREELVNNFCR-----------RELTSYE-------------QIFE-GAE-------LAKLDKTERRYAWIKRRIR 187 (334)
Q Consensus 140 L~~~~k~~lI~wf~~-----------~~L~eY~-------------~iF~-~~E-------a~~Ldni~RRy~Wfkr~L~ 187 (334)
.++.+.|..||.. .-|.+.. +||. ++. .+.|.-+-.||.-|-|.-
T Consensus 75 --~~s~~~L~~Wy~~G~s~gl~~~v~~vL~~Id~~~pl~~R~~~g~~i~~ld~~~~i~~~~~~~Lq~~i~~F~~f~~~~- 151 (324)
T PF07138_consen 75 --GDSAERLSTWYSCGESSGLCADVQEVLAEIDAHVPLEKRVQRGGQIFALDNFLEIHENVTDLLQTIIGRFIHFVRCG- 151 (324)
T ss_pred --HHHHHHHHHHHhcCCccccCHHHHHHHHHHhccCCHHHHhccccccccchhhhhhhHhHHHHHHHHHHHHHHHhhhh-
Confidence 6778899999843 2333333 3454 221 235666777887776642
Q ss_pred hhhhhcCcCCCcccccHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHH
Q 019917 188 TNEEIFKIFPPSWHVPYLLNIQFCKKTRKQLEGILDNLTERPDVGTLLLALQRTIEFE 245 (334)
Q Consensus 188 ~~e~~~~iFP~~W~v~~~L~~~Fc~~Tr~dL~~lL~~~~~~~dv~~Ll~aLq~Tl~FE 245 (334)
.....+.+|-|+=.+.-+--.+||-+|--+ .+....-+.--+..|-+|+.+.+.+.
T Consensus 152 ~L~~vA~vF~p~~~~~GWWY~KFCVlTYm~--ri~~~~vp~el~~RL~~aV~K~i~~~ 207 (324)
T PF07138_consen 152 KLEHVADVFNPTIDVVGWWYNKFCVLTYMH--RIICGSVPAELLTRLQNAVNKFIKPN 207 (324)
T ss_pred HHHHHHHhcCCCCCcccchhhhHHHHHHHH--HHHhCCCcHHHHHHHHHHHHHHhCcC
Confidence 123456789887667667788999999744 33332222223467888888888887
No 14
>KOG3691 consensus Exocyst complex subunit Sec8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=54.80 E-value=2.1e+02 Score=32.36 Aligned_cols=75 Identities=16% Similarity=0.322 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHHHHHHHhh
Q 019917 36 TTTITALHRLTMLVSAVEQLQVMASKRQYKEAAAQLEAVNQLCSHFEAYRDIPKITELREKFKNIKQILKSHVFSDF 112 (334)
Q Consensus 36 T~SIT~LkrL~MLv~av~qL~~~~~~r~Y~e~a~lL~av~~L~~~F~~YksIp~I~~L~~~~~~i~~~L~~qI~~DF 112 (334)
+..|..|+.|.=|-..-+.++.++.++||..++.+|.-+-++++- ++..|.-+..|..++......|-+-+.++.
T Consensus 130 K~Vi~vL~eieEl~qvPqkie~~i~keqY~~Asdll~~~~~~lng--~L~~VEgLs~l~~ele~~~~~L~~~L~eEL 204 (982)
T KOG3691|consen 130 KKVIEVLKEIEELRQVPQKIETLIAKEQYLQASDLLTRAWELLNG--PLDGVEGLSDLRSELEGLLSHLEDILIEEL 204 (982)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--cchhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 345677777888888888889999999999999999988888864 377788788888777766666555444443
No 15
>PF04124 Dor1: Dor1-like family ; InterPro: IPR007255 Dor1 is involved in vesicle targeting to the yeast Golgi apparatus and complexes with a number of other trafficking proteins, which include Sec34 and Sec35 [].
Probab=48.04 E-value=2.8e+02 Score=27.22 Aligned_cols=105 Identities=16% Similarity=0.282 Sum_probs=65.8
Q ss_pred HHHHHHHHHhHHHHHHHHHhhhhHhhhhhhHH----HHHHHHHHHHHHHHHHHHHHHHH----------hhcCHHHHHHH
Q 019917 5 REIKNKAEQSETMVQEICRDIKKLDFAKKHIT----TTITALHRLTMLVSAVEQLQVMA----------SKRQYKEAAAQ 70 (334)
Q Consensus 5 ~~Ik~kA~~SE~~V~eIt~DIk~LD~AKrNLT----~SIT~LkrL~MLv~av~qL~~~~----------~~r~Y~e~a~l 70 (334)
..|...-...+.-+.+|...|-+|+.+=.... .....-+....+..-.++|..++ .+..|.|+-.+
T Consensus 49 ~~i~~~~~~~~~~l~~L~~~l~~L~~~~~~f~~~~~~~~~~r~~~~~~l~~~~~l~diLElP~Lm~~ci~~g~y~eALel 128 (338)
T PF04124_consen 49 SDIRQELSSLSDSLDSLLDSLPELDEACQRFSSKAQKISEERKKASLLLENHDRLLDILELPQLMDTCIRNGNYSEALEL 128 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcccHhhHHHH
Confidence 44555555556667777777776664422222 12222333333334444443333 56799999999
Q ss_pred HHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHHHHHHHhh
Q 019917 71 LEAVNQLCSHFEAYRDIPKITELREKFKNIKQILKSHVFSDF 112 (334)
Q Consensus 71 L~av~~L~~~F~~YksIp~I~~L~~~~~~i~~~L~~qI~~DF 112 (334)
...+..|...| .++|-|+.+..++......+..++..-+
T Consensus 129 ~~~~~~L~~~~---~~~~lv~~i~~ev~~~~~~ml~~Li~~L 167 (338)
T PF04124_consen 129 SAHVRRLQSRF---PNIPLVKSIAQEVEAALQQMLSQLINQL 167 (338)
T ss_pred HHHHHHHHHhc---cCchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999988765 4599999999888777666666676533
No 16
>PF01858 RB_A: Retinoblastoma-associated protein A domain; InterPro: IPR002720 Retinoblastoma-like and retinoblastoma-associated proteins may have a function in cell cycle regulation. They form a complex with adenovirus E1A and Simian virus 40 (SV40) large T antigen, and may bind and modulate the function of certain cellular proteins with which T and E1A compete for pocket binding. The proteins may act as tumor suppressors, and are potent inhibitors of E2F-mediated trans-activation. This domain has the cyclin fold []. The crystal structure of the Rb pocket bound to a nine-residue E7 peptide containing the LxCxE motif, shared by other Rb-binding viral and cellular proteins, shows that the LxCxE peptide binds a highly conserved groove on the B-box portion of the pocket; the A-box portion appears to be required for the stable folding of the B box (see IPR002719 from INTERPRO). Also highly conserved is the extensive A-B interface, suggesting that it may be an additional protein-binding site. The A and B boxes each contain the cyclin-fold structural motif, with the LxCxE-binding site on the B-box cyclin fold being similar to a Cdk2-binding site of cyclin A and to a TBP-binding site of TFIIB []. The A and B boxes are found at the C-terminal end of the protein; the A-box is on N-terminal side of the B-box.; GO: 0051726 regulation of cell cycle, 0005634 nucleus; PDB: 1O9K_A 3POM_A 1GH6_B 1N4M_A 4ELL_B 1AD6_A 1GUX_A 2R7G_C 4ELJ_A.
Probab=44.45 E-value=1.5e+02 Score=27.03 Aligned_cols=153 Identities=14% Similarity=0.164 Sum_probs=78.9
Q ss_pred HHHHHHHHHHHHHHHHHH-----HHHHHHHhhcCHHHHHHHHHHHHHHHHhc-ccCCC--------chHHHHHHHHHHHH
Q 019917 35 ITTTITALHRLTMLVSAV-----EQLQVMASKRQYKEAAAQLEAVNQLCSHF-EAYRD--------IPKITELREKFKNI 100 (334)
Q Consensus 35 LT~SIT~LkrL~MLv~av-----~qL~~~~~~r~Y~e~a~lL~av~~L~~~F-~~Yks--------Ip~I~~L~~~~~~i 100 (334)
++++|++.++|++++.+. ++|..+.+.-...-......-|.++.+-| +.|.. .+-..+-......+
T Consensus 3 Vs~A~~~~~~L~~~l~~~~~~PS~~L~~~~~~c~~~p~~~i~~rv~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~L 82 (194)
T PF01858_consen 3 VSSAMQSVSWLQALLSGLSDEPSEELLRIFKSCSRDPTESILKRVKQLLEKFCQKYTEAEGEQSSNSDFAEQRFNLAEKL 82 (194)
T ss_dssp HHHHHHHHHHHHHHHHHS-SS--HHHHHHHHTSSS--HHHHHHHHHHHHHHHHHHHHHHHSGG--GHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHHHHH
Confidence 678999999999999975 78888887766655666777777777655 44432 22223333333444
Q ss_pred HHHHHHHHHHhhhhcCCCCCchhhhhhHhHhhhhhHHHhcC-hhHHHHHHHHHHHHhHHHHHHhcCCcccccccchhhhH
Q 019917 101 KQILKSHVFSDFSSLGTGKETEETNLLQQLSDACLVVDALE-PSVREELVNNFCRRELTSYEQIFEGAELAKLDKTERRY 179 (334)
Q Consensus 101 ~~~L~~qI~~DF~~~~~~~~~~~~~~~~~L~~aC~vvD~L~-~~~k~~lI~wf~~~~L~eY~~iF~~~Ea~~Ldni~RRy 179 (334)
...+-+.|..+=..-.. .. .+--+|. +.+=..|+.-+..-.|..|+. .++.|
T Consensus 83 YY~~LE~Il~~E~~r~~-~~--------------~ls~LL~~~~FhrsL~ACclEiVl~sy~~------------~~~~F 135 (194)
T PF01858_consen 83 YYKVLEKILKAEEKRLP-TN--------------DLSSLLSQEIFHRSLLACCLEIVLFSYKS------------VSLSF 135 (194)
T ss_dssp HHHHHHHHHHHHHHHHS-CS--------------HHHHHHT-HHHHHHHHHHHHHHHHHHTCT------------SSSST
T ss_pred HHHHHHHHHHHHhcccc-Hh--------------HHHHHhhhhHHHHHHHHHHHHHHHHHcCC------------CCCcc
Confidence 44444444321111000 00 0111112 345555666666666666654 23456
Q ss_pred HHHHHhhhh--hhhhcC----cCCCcccccHHHHHHHHHHHH
Q 019917 180 AWIKRRIRT--NEEIFK----IFPPSWHVPYLLNIQFCKKTR 215 (334)
Q Consensus 180 ~Wfkr~L~~--~e~~~~----iFP~~W~v~~~L~~~Fc~~Tr 215 (334)
=|+-..+.- |+ .++ +-=.+..+|..|...|-.+-.
T Consensus 136 PwiL~~~~i~~f~-f~KvIE~~Vr~~~~Lpr~lvkHL~~IEE 176 (194)
T PF01858_consen 136 PWILEVFDIHPFD-FYKVIESFVRHEDGLPRELVKHLNSIEE 176 (194)
T ss_dssp THHHHHTT--HHH-HHTTHHHHHHH-TT--HHHHHHHHHHHH
T ss_pred hHHHHhcCCChhh-HhhHHHHHHHccccCCHHHHHHHHHHHH
Confidence 677766544 22 111 111244466777666665554
No 17
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=43.23 E-value=2.9e+02 Score=26.08 Aligned_cols=44 Identities=27% Similarity=0.416 Sum_probs=36.7
Q ss_pred chhHHHHHHHHHhHHHHHHHHHhhhhHhhhhhhHHHHHHHHHHH
Q 019917 2 YKIREIKNKAEQSETMVQEICRDIKKLDFAKKHITTTITALHRL 45 (334)
Q Consensus 2 ~kI~~Ik~kA~~SE~~V~eIt~DIk~LD~AKrNLT~SIT~LkrL 45 (334)
..|.+||.|+..-|.+..+|+..+..++.=-+.|+..-+...-|
T Consensus 1 e~i~~ir~K~~~lek~k~~i~~e~~~~e~ee~~L~e~~kE~~~L 44 (230)
T PF10146_consen 1 EKIKEIRNKTLELEKLKNEILQEVESLENEEKCLEEYRKEMEEL 44 (230)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36899999999999999999999999998888887776655443
No 18
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=43.04 E-value=6e+02 Score=29.63 Aligned_cols=53 Identities=21% Similarity=0.302 Sum_probs=39.5
Q ss_pred HhHhhhhhHHHhcChhHHHHHHHHHHHH--hHHHHHHhcCCcccccccchhhhHHHHHHhhhh
Q 019917 128 QQLSDACLVVDALEPSVREELVNNFCRR--ELTSYEQIFEGAELAKLDKTERRYAWIKRRIRT 188 (334)
Q Consensus 128 ~~L~~aC~vvD~L~~~~k~~lI~wf~~~--~L~eY~~iF~~~Ea~~Ldni~RRy~Wfkr~L~~ 188 (334)
..+..-|.++|.+.|.++..+++-+-+. .|..|. +.|++++||..=+-+.|+.
T Consensus 963 ~~~~~l~~~~~~~~~~~~~~l~e~~~~~~~~i~~f~--------~~l~~~~r~I~~~s~~l~~ 1017 (1201)
T PF12128_consen 963 QWAPDLQELLDVLIPQQQQALIEQGRNIGNDISNFY--------GVLEDFDRRIKSQSRRLSR 1017 (1201)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHhhHHHHHHHHHHH
Confidence 3366889999999888888887776543 233333 3677999999999998877
No 19
>PF04108 APG17: Autophagy protein Apg17 ; InterPro: IPR007240 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Autophagy protein 17 (Apg17) is required for activating Apg1 protein kinases. This entry also contains Autophagy protein 11 which is involved in cytoplasm to vacuole transport (Cvt) and pexophagy. ; GO: 0006914 autophagy
Probab=42.89 E-value=3.7e+02 Score=27.35 Aligned_cols=44 Identities=11% Similarity=0.258 Sum_probs=26.3
Q ss_pred HHHHHHHHHhHHHHHHHHHhhhhHhhhhhh----HHHHHHHHHHHHHH
Q 019917 5 REIKNKAEQSETMVQEICRDIKKLDFAKKH----ITTTITALHRLTML 48 (334)
Q Consensus 5 ~~Ik~kA~~SE~~V~eIt~DIk~LD~AKrN----LT~SIT~LkrL~ML 48 (334)
+-+..-|.+-+.+|++|...+......=.+ |......+..++-.
T Consensus 244 ~Vl~~Da~El~~V~~el~~~~~~~~~~~~~~~k~l~~~~~~~~~~~~~ 291 (412)
T PF04108_consen 244 EVLENDAQELPDVVKELQERLDEMENNEERTKKLLQSQRDHIRELYNA 291 (412)
T ss_pred HHHHcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556777777777777777666665555 55554444444433
No 20
>PF06580 His_kinase: Histidine kinase; InterPro: IPR010559 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This family represents a region within bacterial histidine kinase enzymes. Two-component signal transduction systems such as those mediated by histidine kinase are integral parts of bacterial cellular regulatory processes, and are used to regulate the expression of genes involved in virulence. Members of this family often contain IPR003594 from INTERPRO and/or IPR003660 from INTERPRO.; GO: 0000155 two-component sensor activity, 0000160 two-component signal transduction system (phosphorelay), 0016021 integral to membrane
Probab=41.54 E-value=1.2e+02 Score=23.63 Aligned_cols=58 Identities=14% Similarity=0.183 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHHH
Q 019917 46 TMLVSAVEQLQVMASKRQYKEAAAQLEAVNQLCSHFEAYRDIPKITELREKFKNIKQILKS 106 (334)
Q Consensus 46 ~MLv~av~qL~~~~~~r~Y~e~a~lL~av~~L~~~F~~YksIp~I~~L~~~~~~i~~~L~~ 106 (334)
|.|-++++.+..++... ..+++..+....+++.+.= .+-.....|.++++.+++.+.-
T Consensus 12 HFl~NtLn~I~~l~~~~-~~~~~~~i~~ls~~lRy~l--~~~~~~v~l~~El~~i~~Yl~i 69 (82)
T PF06580_consen 12 HFLFNTLNSISWLARID-PEKASEMILSLSDLLRYSL--SSKEEFVTLEEELEFIENYLEI 69 (82)
T ss_pred HHHHHHHHHHHHHHHcC-HHHHHHHHHHHHHHHHHHh--CCCCCeeeHHHHHHHHHHHHHH
Confidence 67889999999999998 9999999998888887655 6667777888899988887663
No 21
>cd07637 BAR_ACAP3 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP3 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 3), also called centaurin beta-5, is presumed to be an Arf GTPase activating protein (GAP) based on its similarity to the Arf6-specific GAPs ACAP1 and ACAP2. The specific function of ACAP3 is still unknown. ACAP3 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=36.90 E-value=3.4e+02 Score=25.00 Aligned_cols=69 Identities=17% Similarity=0.196 Sum_probs=44.2
Q ss_pred hhHHHHHHHHHhHHHHHHHHHhhhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHH
Q 019917 3 KIREIKNKAEQSETMVQEICRDIKKLDFAKKHITTTITALHRLTMLVSAVEQLQVMASKRQYKEAAAQLEAVNQLCS 79 (334)
Q Consensus 3 kI~~Ik~kA~~SE~~V~eIt~DIk~LD~AKrNLT~SIT~LkrL~MLv~av~qL~~~~~~r~Y~e~a~lL~av~~L~~ 79 (334)
.|.++-.-..+-|.-+..+.+.++.+=-|=+++.++ ..-+++|+.++...+..-. .+++.|.-..+.+.
T Consensus 3 ~~~~~E~~~~~le~~l~kl~K~~~~~~d~g~~~~~a------~~~F~~~l~d~~~~~~gd~--~i~~~L~kF~~~l~ 71 (200)
T cd07637 3 TIDEVETDVVEIEAKLDKLVKLCSGMIEAGKAYATT------NKLFVSGIRDLSQQCKKDE--MISECLDKFGDSLQ 71 (200)
T ss_pred hHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHcCCch--HHHHHHHHHHHHHH
Confidence 456666667777777777777777777776777664 5667888888887765432 34444444333333
No 22
>PTZ00464 SNF-7-like protein; Provisional
Probab=31.23 E-value=4.4e+02 Score=24.56 Aligned_cols=93 Identities=12% Similarity=0.234 Sum_probs=51.4
Q ss_pred HHHHHhHHHHHHHHHhhhhHhh----hhhhH------------HHHHHHHHHHHHHHHHHHHHHHHH-------h----h
Q 019917 9 NKAEQSETMVQEICRDIKKLDF----AKKHI------------TTTITALHRLTMLVSAVEQLQVMA-------S----K 61 (334)
Q Consensus 9 ~kA~~SE~~V~eIt~DIk~LD~----AKrNL------------T~SIT~LkrL~MLv~av~qL~~~~-------~----~ 61 (334)
+.+..-+.-+..+-+-|++||. ||+.+ ...+.+|||=.|+-.-++++.... . .
T Consensus 18 d~~~~l~~r~~~l~kKi~~ld~E~~~ak~~~k~~~~~~~~~~K~~Al~~LK~KK~~E~ql~~l~~q~~nleq~~~~ie~a 97 (211)
T PTZ00464 18 DASKRIGGRSEVVDARINKIDAELMKLKEQIQRTRGMTQSRHKQRAMQLLQQKRMYQNQQDMMMQQQFNMDQLQFTTESV 97 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444445555555555663 54443 356677877776665444433332 1 2
Q ss_pred cCHHHHHHHHHHHHHHH-HhcccCCCchHHHHHHHHHHHHHH
Q 019917 62 RQYKEAAAQLEAVNQLC-SHFEAYRDIPKITELREKFKNIKQ 102 (334)
Q Consensus 62 r~Y~e~a~lL~av~~L~-~~F~~YksIp~I~~L~~~~~~i~~ 102 (334)
+.-.++...|..-...+ ..++. .+|+.|-.|.+.+.....
T Consensus 98 ~~~~~vv~amk~g~kaLK~~~k~-i~id~Vd~l~Dei~E~~e 138 (211)
T PTZ00464 98 KDTKVQVDAMKQAAKTLKKQFKK-LNVDKVEDLQDELADLYE 138 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHH
Confidence 33456666666555555 34444 489999888877665443
No 23
>cd07648 F-BAR_FCHO The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proteins in this group have been named FCH domain Only (FCHO) proteins. Vertebrates have two members, FCHO1 and FCHO2. These proteins contain an F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=29.98 E-value=4.7e+02 Score=24.48 Aligned_cols=14 Identities=21% Similarity=0.223 Sum_probs=6.9
Q ss_pred HHHHHhHHHHHHHH
Q 019917 9 NKAEQSETMVQEIC 22 (334)
Q Consensus 9 ~kA~~SE~~V~eIt 22 (334)
.-|...++++..|.
T Consensus 71 ~~a~~H~~l~~~L~ 84 (261)
T cd07648 71 KLSELHLQLVQKLQ 84 (261)
T ss_pred HHHHHHHHHHHHHH
Confidence 34455555555554
No 24
>KOG2218 consensus ER to golgi transport protein/RAD50-interacting protein 1 [Intracellular trafficking, secretion, and vesicular transport; Cell cycle control, cell division, chromosome partitioning]
Probab=29.94 E-value=8.1e+02 Score=27.27 Aligned_cols=105 Identities=21% Similarity=0.320 Sum_probs=70.5
Q ss_pred HHHHHHHHHhHHHHHHhcC-C---c-ccccccchhhhHHHHHHhhhhhhhhc-CcCC--------CcccccHHHHHHHHH
Q 019917 147 ELVNNFCRRELTSYEQIFE-G---A-ELAKLDKTERRYAWIKRRIRTNEEIF-KIFP--------PSWHVPYLLNIQFCK 212 (334)
Q Consensus 147 ~lI~wf~~~~L~eY~~iF~-~---~-Ea~~Ldni~RRy~Wfkr~L~~~e~~~-~iFP--------~~W~v~~~L~~~Fc~ 212 (334)
.=+-|++.-.+.+|..-|+ . + ...||++.+==|+++-+.++++-+.. ..|- .+-..-..+...-|.
T Consensus 262 ~~~lw~~q~L~~P~~~rF~YHF~~~rqTn~lsKPEwff~~vlk~~ren~~~~d~~~qp~~D~agl~~~~~r~efi~~lvq 341 (737)
T KOG2218|consen 262 EPVLWATQVLLTPYAKRFRYHFMSDRQTNRLSKPEWFFEFVLKVLRENRESFDELFQPLVDKAGLLSVNARLEFINGLVQ 341 (737)
T ss_pred CchhHHHHHHHHHHHhhhheeeccccccccccCcHHHHHHHHHHHHHHHHHHHHHhhhHHHhhcCCCCCHHHHHHHHHHH
Confidence 3377999999999999996 3 2 67899999988888888888874322 2322 232233333444444
Q ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHhC
Q 019917 213 KTRKQLEGILDNLTERPDVGTLLLALQRTIEFEDELAEKFG 253 (334)
Q Consensus 213 ~Tr~dL~~lL~~~~~~~dv~~Ll~aLq~Tl~FE~~L~~rF~ 253 (334)
.-++-+...+... .-+-.++++-+..|+.|++.|..-|+
T Consensus 342 l~kekl~~~I~q~--d~k~~l~~HLvdq~l~Fdkrl~s~f~ 380 (737)
T KOG2218|consen 342 LAKEKLAVDISQL--DQKRNLFLHLVDQVLAFDKRLQSSFG 380 (737)
T ss_pred HHHHHhhhhhhhH--HhhhhhhHHHHHHHHHHHHHHHHHcC
Confidence 4444444433322 22345678889999999999999999
No 25
>PF08385 DHC_N1: Dynein heavy chain, N-terminal region 1; InterPro: IPR013594 Dynein heavy chains interact with other heavy chains to form dimers, and with intermediate chain-light chain complexes to form a basal cargo binding unit []. The region featured in this family includes the sequences implicated in mediating these interactions []. It is thought to be flexible and not to adopt a rigid conformation [].
Probab=28.93 E-value=6.6e+02 Score=25.87 Aligned_cols=104 Identities=17% Similarity=0.313 Sum_probs=51.9
Q ss_pred HHHHHHHHhHHHHHHHHHhhhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHH-HHHHHHHHhcccC
Q 019917 6 EIKNKAEQSETMVQEICRDIKKLDFAKKHITTTITALHRLTMLVSAVEQLQVMASKRQYKEAAAQL-EAVNQLCSHFEAY 84 (334)
Q Consensus 6 ~Ik~kA~~SE~~V~eIt~DIk~LD~AKrNLT~SIT~LkrL~MLv~av~qL~~~~~~r~Y~e~a~lL-~av~~L~~~F~~Y 84 (334)
..+.+-...|..+..+-++. ++.+ .|+...+..|.++.-|. --..++..+. +.|..+.+.+ ..+..+-..|...
T Consensus 302 ~f~~~i~~lE~~l~~~l~~~--f~~~-~s~~~~~~ll~~f~~L~-~Rp~I~~~l~-~~~~~ll~~~~~ei~~~~~~f~~~ 376 (579)
T PF08385_consen 302 EFRERIEDLERRLANILRQA--FDDC-SSPEEAFRLLQKFKSLL-NRPRIRKALQ-EKYEQLLQQFKEEIDQLKKIFDNQ 376 (579)
T ss_pred HHHHHHHHHHHHHHHHHHHH--hcCc-CCHHHHHHHHHHHHhHh-cchHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34455556666665555543 5555 67777777777776665 3344444444 3333333322 2233333444433
Q ss_pred C------------CchHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 019917 85 R------------DIPKITELREKFKNIKQILKSHVFSDFSSL 115 (334)
Q Consensus 85 k------------sIp~I~~L~~~~~~i~~~L~~qI~~DF~~~ 115 (334)
+ ++|.++.-.--...+...+.. .+..|+.+
T Consensus 377 ~~~~~~~~~~~~~~~Ppvag~i~w~r~L~~ri~~-~~~~~~~~ 418 (579)
T PF08385_consen 377 KEKSETDNPPLPRNLPPVAGAIIWARQLERRIKE-PMQRLKSL 418 (579)
T ss_pred cccccccccccccCCcHHHHHHHHHHHHHHHHhH-HHHHHHHh
Confidence 3 566655544444444444443 33334443
No 26
>PRK12803 flagellin; Provisional
Probab=28.44 E-value=3.3e+02 Score=27.15 Aligned_cols=82 Identities=10% Similarity=0.158 Sum_probs=48.2
Q ss_pred HHHHHHHhhhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhc-ccCCCchHHHHHHH
Q 019917 17 MVQEICRDIKKLDFAKKHITTTITALHRLTMLVSAVEQLQVMASKRQYKEAAAQLEAVNQLCSHF-EAYRDIPKITELRE 95 (334)
Q Consensus 17 ~V~eIt~DIk~LD~AKrNLT~SIT~LkrL~MLv~av~qL~~~~~~r~Y~e~a~lL~av~~L~~~F-~~YksIp~I~~L~~ 95 (334)
....|..+|..|+.+++|+...+..|+.- -+++. ++.+.|+-+++|+-.= ..=.+-..-..+..
T Consensus 48 ia~~l~s~i~~l~q~~~Ni~~a~s~lqta---e~aL~------------~i~~~LqrirELavqA~Ngt~s~~dR~ai~~ 112 (335)
T PRK12803 48 VAGKINAQIRGLSQASRNTSKAINFIQTT---EGNLN------------EVEKVLVRMKELAVQSGNGTYSDADRGSIQI 112 (335)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHH------------HHHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Confidence 45678899999999999999988877642 22222 2334445555554211 12122344556666
Q ss_pred HHHHHHHHHHHHHH-Hhhh
Q 019917 96 KFKNIKQILKSHVF-SDFS 113 (334)
Q Consensus 96 ~~~~i~~~L~~qI~-~DF~ 113 (334)
+++.++..+..-.- .+|.
T Consensus 113 Ei~qL~~~i~~ian~t~fn 131 (335)
T PRK12803 113 EIEQLTDEINRIADQAQYN 131 (335)
T ss_pred HHHHHHHHHHHHHHhCCcC
Confidence 67766666665332 2565
No 27
>PF00015 MCPsignal: Methyl-accepting chemotaxis protein (MCP) signalling domain; InterPro: IPR004089 Methyl-accepting chemotaxis proteins (MCPs) are a family of bacterial receptors that mediate chemotaxis to diverse signals, responding to changes in the concentration of attractants and repellents in the environment by altering swimming behaviour []. Environmental diversity gives rise to diversity in bacterial signalling receptors, and consequently there are many genes encoding MCPs []. For example, there are four well-characterised MCPs found in Escherichia coli: Tar (taxis towards aspartate and maltose, away from nickel and cobalt), Tsr (taxis towards serine, away from leucine, indole and weak acids), Trg (taxis towards galactose and ribose) and Tap (taxis towards dipeptides). MCPs share similar topology and signalling mechanisms. MCPs either bind ligands directly or interact with ligand-binding proteins, transducing the signal to downstream signalling proteins in the cytoplasm. MCPs undergo two covalent modifications: deamidation and reversible methylation at a number of glutamate residues. Attractants increase the level of methylation, while repellents decrease it. The methyl groups are added by the methyl-transferase cheR and are removed by the methylesterase cheB. Most MCPs are homodimers that contain the following organisation: an N-terminal signal sequence that acts as a transmembrane domain in the mature protein; a poorly-conserved periplasmic receptor (ligand-binding) domain; a second transmembrane domain; and a highly-conserved C-terminal cytoplasmic domain that interacts with downstream signalling components. The C-terminal domain contains the glycosylated glutamate residues. This entry represents the signalling domain found in several methyl-accepting chemotaxis proteins. This domain is thought to transduce the signal to CheA since it is highly conserved in very diverse MCPs.; GO: 0004871 signal transducer activity, 0007165 signal transduction, 0016020 membrane; PDB: 2CH7_A 3ZX6_B 1QU7_A 3G6B_B 3UR1_C 3G67_B.
Probab=27.80 E-value=3.6e+02 Score=23.53 Aligned_cols=27 Identities=30% Similarity=0.366 Sum_probs=22.0
Q ss_pred HHHHHHHHHhHHHHHHHHHhhhhHhhh
Q 019917 5 REIKNKAEQSETMVQEICRDIKKLDFA 31 (334)
Q Consensus 5 ~~Ik~kA~~SE~~V~eIt~DIk~LD~A 31 (334)
.+||.-|.+|.....+|..=|..+...
T Consensus 82 ~eir~LA~~t~~~~~~I~~~i~~i~~~ 108 (213)
T PF00015_consen 82 DEIRKLAEQTSESAKEISEIIEEIQEQ 108 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhhhhHHHHHHHHHhhhhhh
Confidence 578999999999888888877776555
No 28
>PRK12807 flagellin; Provisional
Probab=27.39 E-value=3.7e+02 Score=25.75 Aligned_cols=83 Identities=10% Similarity=0.201 Sum_probs=50.5
Q ss_pred HHHHHHHhhhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhc-ccCCCchHHHHHHH
Q 019917 17 MVQEICRDIKKLDFAKKHITTTITALHRLTMLVSAVEQLQVMASKRQYKEAAAQLEAVNQLCSHF-EAYRDIPKITELRE 95 (334)
Q Consensus 17 ~V~eIt~DIk~LD~AKrNLT~SIT~LkrL~MLv~av~qL~~~~~~r~Y~e~a~lL~av~~L~~~F-~~YksIp~I~~L~~ 95 (334)
.+..+..++..|+.+++|+...+..|+.= -+++. ++.+.|+-+++|+..- .+=-+-..-..+..
T Consensus 48 ~~~~l~~~~~~~~q~~~N~~~~~s~l~~a---d~~L~------------~i~~~l~r~rel~v~a~ngt~s~~dr~ai~~ 112 (287)
T PRK12807 48 IATRMRARQSGLEKASQNTQDGMSLIRTA---ESAMN------------SVSNILTRMRDIAVQSSNGTNTAENQSALQK 112 (287)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHH------------HHHHHHHHHHHHHHHHccCCCCHHHHHHHHH
Confidence 45688899999999999999999776542 22222 2334455555555322 12222355566667
Q ss_pred HHHHHHHHHHHHH-HHhhhh
Q 019917 96 KFKNIKQILKSHV-FSDFSS 114 (334)
Q Consensus 96 ~~~~i~~~L~~qI-~~DF~~ 114 (334)
++..++..+..-. -.+|..
T Consensus 113 Ei~~l~~~i~~~a~~t~~nG 132 (287)
T PRK12807 113 EFAELQEQIDYIAKNTEFND 132 (287)
T ss_pred HHHHHHHHHHHHHHhCCcCC
Confidence 7777777666643 245653
No 29
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=27.10 E-value=7.2e+02 Score=25.77 Aligned_cols=72 Identities=22% Similarity=0.320 Sum_probs=46.6
Q ss_pred chhHHHHHHHHHhHHHHHHHHHhhhhHhhhhhhHHHHHHHHHHHH-HHHHHHHHHHHHHhh--cCHHHHHHHHHHHHH
Q 019917 2 YKIREIKNKAEQSETMVQEICRDIKKLDFAKKHITTTITALHRLT-MLVSAVEQLQVMASK--RQYKEAAAQLEAVNQ 76 (334)
Q Consensus 2 ~kI~~Ik~kA~~SE~~V~eIt~DIk~LD~AKrNLT~SIT~LkrL~-MLv~av~qL~~~~~~--r~Y~e~a~lL~av~~ 76 (334)
.+|.+++.+..+.|.+++++..+|.+++.+= ..|-..|+.+. ++-.+-..|+.+-.. .+-.-.|-+|.+...
T Consensus 52 ~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql---~~s~~~l~~~~~~I~~~~~~l~~l~~q~r~qr~~La~~L~A~~r 126 (420)
T COG4942 52 KKIREQQDQRAKLEKQLKSLETEIASLEAQL---IETADDLKKLRKQIADLNARLNALEVQEREQRRRLAEQLAALQR 126 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4788999999999999999999999999874 45555555543 333333333333322 344445555555544
No 30
>COG1344 FlgL Flagellin and related hook-associated proteins [Cell motility and secretion]
Probab=25.61 E-value=3.6e+02 Score=26.68 Aligned_cols=75 Identities=15% Similarity=0.216 Sum_probs=42.5
Q ss_pred HHHHHHHhhhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhcc-cCCCchHHHHHHH
Q 019917 17 MVQEICRDIKKLDFAKKHITTTITALHRLTMLVSAVEQLQVMASKRQYKEAAAQLEAVNQLCSHFE-AYRDIPKITELRE 95 (334)
Q Consensus 17 ~V~eIt~DIk~LD~AKrNLT~SIT~LkrL~MLv~av~qL~~~~~~r~Y~e~a~lL~av~~L~~~F~-~YksIp~I~~L~~ 95 (334)
....|..+|+.|+.+++|+...|..|+- =-+|+. ++...|+.+++++---. .=.+=+.-..+.+
T Consensus 48 is~~l~~~~~~L~q~~~n~~~g~s~lqt---ae~aL~------------~~~~~lqrirelavqaan~t~s~~dr~~iq~ 112 (360)
T COG1344 48 IALRLRSQIRGLSQAKDNAQDGISKLQT---AEGALS------------EISKILQRIKELAVQAANGTLSDADRAAIQK 112 (360)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHH---HHHHHH------------HHHHHHHHHHHHHHHHccCCCCHHHHHHHHH
Confidence 4467889999999999999998876543 122222 34445555666653222 2122233344455
Q ss_pred HHHHHHHHHHH
Q 019917 96 KFKNIKQILKS 106 (334)
Q Consensus 96 ~~~~i~~~L~~ 106 (334)
++..++..|..
T Consensus 113 Ei~~l~~el~~ 123 (360)
T COG1344 113 EIEQLLDELDN 123 (360)
T ss_pred HHHHHHHHHHH
Confidence 55555555544
No 31
>PF09577 Spore_YpjB: Sporulation protein YpjB (SpoYpjB); InterPro: IPR014231 Proteins in thie entry, typified by YpjB, are restricted to a subset of the endospore-forming bacteria which includes Bacillus species, but not species. In Bacillus subtilis, ypjB was found to be part of the sigma-E regulon []. Sigma-E is a sporulation sigma factor that regulates expression in the mother cell compartment. Null mutants of ypjB show a sporulation defect, but this gene is not, however, a part of the endospore formation minimal gene set.
Probab=25.44 E-value=3.5e+02 Score=25.66 Aligned_cols=178 Identities=19% Similarity=0.250 Sum_probs=100.9
Q ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHH--hcccC-CCchHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCchhh
Q 019917 48 LVSAVEQLQVMASKRQYKEAAAQLEAVNQLCS--HFEAY-RDIPKITELREKFKNIKQILKSHVFSDFSSLGTGKETEET 124 (334)
Q Consensus 48 Lv~av~qL~~~~~~r~Y~e~a~lL~av~~L~~--~F~~Y-ksIp~I~~L~~~~~~i~~~L~~qI~~DF~~~~~~~~~~~~ 124 (334)
|-..-+++=.++++.+|.++-..|.-+.+-+. .|++. .+++.|+.|...+...+..|..- ...+.
T Consensus 5 Ld~~sd~~lqlvk~~~yeeA~q~l~~fs~~f~~~~~~~~~~t~e~iralT~t~~~a~~al~~~------------~~~~~ 72 (232)
T PF09577_consen 5 LDQLSDEALQLVKQGKYEEAKQLLEYFSEQFTSVDFKGRPLTMEEIRALTETIEEAKKALTSV------------SMSEE 72 (232)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhhccccccccCHHHHHHHHHHHHHHHHHHHcc------------CCCHH
Confidence 44455778888999999999999998877774 45555 78999999999999998876641 11011
Q ss_pred hhhHhHhhhhhHHHhcChhHHHHHHHHHHHHh---HHHHHHhcCCcccccccchhhhHHHHHHhhhhhhhhc-CcCCCcc
Q 019917 125 NLLQQLSDACLVVDALEPSVREELVNNFCRRE---LTSYEQIFEGAELAKLDKTERRYAWIKRRIRTNEEIF-KIFPPSW 200 (334)
Q Consensus 125 ~~~~~L~~aC~vvD~L~~~~k~~lI~wf~~~~---L~eY~~iF~~~Ea~~Ldni~RRy~Wfkr~L~~~e~~~-~iFP~~W 200 (334)
.....-.--=++||+|-... +-|=.-+.... +...++..... |+ .=|+..++.|-++| -|.|+ +
T Consensus 73 e~~~~at~~RLavDAl~~~~-qPLW~~~e~~i~~~~~~mk~a~~~~-----~~-----~~f~~~~n~f~~~y~~I~Ps-l 140 (232)
T PF09577_consen 73 EKIRAATQFRLAVDALTHKH-QPLWLQYEKPIMEDFQRMKQAAQKG-----DK-----EAFRASLNEFLSHYELIRPS-L 140 (232)
T ss_pred HHHHHHHHHHHHHHHhcCCC-CCcHHHHHHHHHHHHHHHHHHHHhC-----CH-----HHHHHHHHHHHHHHHHhcch-h
Confidence 11112223357888876432 11211122222 22223333211 11 33778888888888 46664 4
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHhc-cCCCCHHHHHHHHHHHHHHHHHHHHHhCCC
Q 019917 201 HVPYLLNIQFCKKTRKQLEGILDNL-TERPDVGTLLLALQRTIEFEDELAEKFGGD 255 (334)
Q Consensus 201 ~v~~~L~~~Fc~~Tr~dL~~lL~~~-~~~~dv~~Ll~aLq~Tl~FE~~L~~rF~~~ 255 (334)
.|...- .=...-..+++ .|... ....+.+....+| -..|..|..-|++.
T Consensus 141 ~I~~~~--~~v~~v~s~i~-yl~~~~~~~~~~~~~~~~l---~~le~~l~~lF~~~ 190 (232)
T PF09577_consen 141 TIDRPP--EQVQRVDSHIS-YLERLRFQQLDQKEVQEAL---EQLEEDLQKLFDGV 190 (232)
T ss_pred hccCCH--HHHHHHHHHHH-HHHHhhhcccChHHHHHHH---HHHHHHHHHHhCcc
Confidence 443221 11111122222 22222 2345556666665 45699999999986
No 32
>PF01702 TGT: Queuine tRNA-ribosyltransferase; InterPro: IPR002616 This is a family of queuine, archaeosine and general tRNA-ribosyltransferases 2.4.2.29 from EC, also known as tRNA-guanine transglycosylase and guanine insertion enzyme. Queuine tRNA-ribosyltransferase modifies tRNAs for asparagine, aspartic acid, histidine and tyrosine with queuine at position 34 and with archaeosine at position 15 in archaeal tRNAs. In bacterial it catalyses the exchange of guanine-34 at the wobble position with 7-aminomethyl-7-deazaguanine, and the addition of a cyclopentenediol moiety to 7-aminomethyl-7-deazaguanine-34 tRNA; giving a hypermodified base queuine in the wobble position [, ]. The aligned region contains a zinc binding motif C-x-C-x2-C-x29-H, and important tRNA and 7-aminomethyl-7deazaguanine binding residues [].; GO: 0008479 queuine tRNA-ribosyltransferase activity, 0006400 tRNA modification, 0008616 queuosine biosynthetic process; PDB: 2ASH_A 1J2B_A 1IT8_A 1IT7_B 1IQ8_A 1R5Y_A 1P0B_A 3BL3_A 3EOS_A 1EFZ_A ....
Probab=25.29 E-value=2.3e+02 Score=26.18 Aligned_cols=47 Identities=13% Similarity=0.200 Sum_probs=41.5
Q ss_pred hhhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHH
Q 019917 24 DIKKLDFAKKHITTTITALHRLTMLVSAVEQLQVMASKRQYKEAAAQ 70 (334)
Q Consensus 24 DIk~LD~AKrNLT~SIT~LkrL~MLv~av~qL~~~~~~r~Y~e~a~l 70 (334)
-|..|..++.-|...+-++++|+.+..-+..++..+.+..+.+.+..
T Consensus 189 yl~hL~~~~e~l~~~Ll~~HNl~~~~~~~~~iR~~I~~~~~~~~~~~ 235 (238)
T PF01702_consen 189 YLHHLLKAKEMLGPVLLSIHNLHHYLRFFKEIREAIRNGTLREFVEE 235 (238)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 57889999999999999999999999999999999999888876543
No 33
>PRK08026 flagellin; Validated
Probab=24.43 E-value=3.7e+02 Score=28.63 Aligned_cols=76 Identities=14% Similarity=0.230 Sum_probs=48.9
Q ss_pred HHHHHHHHhhhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHh-cccCCCchHHHHHH
Q 019917 16 TMVQEICRDIKKLDFAKKHITTTITALHRLTMLVSAVEQLQVMASKRQYKEAAAQLEAVNQLCSH-FEAYRDIPKITELR 94 (334)
Q Consensus 16 ~~V~eIt~DIk~LD~AKrNLT~SIT~LkrL~MLv~av~qL~~~~~~r~Y~e~a~lL~av~~L~~~-F~~YksIp~I~~L~ 94 (334)
.....|..+|+.|+.+.+|+...+..|+. --.+++ ++.++|+-+++|+.. =..=-+-.....+.
T Consensus 49 aia~~l~sqi~~l~qa~rN~~dg~s~lqt---AE~aL~------------~i~d~LqRmrELaVqAaNGT~S~~DR~aiq 113 (529)
T PRK08026 49 AIANRFTSNIKGLTQAARNANDGISVAQT---TEGALS------------EINNNLQRVRELTVQAATGTNSQSDLDSIQ 113 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH------------HHHHHHHHHHHHHHHhccCCCCHHHHHHHH
Confidence 35678999999999999999999887643 223332 344556666666632 22223335566666
Q ss_pred HHHHHHHHHHHH
Q 019917 95 EKFKNIKQILKS 106 (334)
Q Consensus 95 ~~~~~i~~~L~~ 106 (334)
.++..+...+..
T Consensus 114 ~Ei~qL~~eI~~ 125 (529)
T PRK08026 114 DEIKSRLDEIDR 125 (529)
T ss_pred HHHHHHHHHHHH
Confidence 777766666654
No 34
>KOG2346 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.29 E-value=2.7e+02 Score=29.67 Aligned_cols=59 Identities=15% Similarity=0.183 Sum_probs=37.5
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 019917 53 EQLQVMASKRQYKEAAAQLEAVNQLCSHFEAYRDIPKITELREKFKNIKQILKSHVFSDFSS 114 (334)
Q Consensus 53 ~qL~~~~~~r~Y~e~a~lL~av~~L~~~F~~YksIp~I~~L~~~~~~i~~~L~~qI~~DF~~ 114 (334)
-.|++..+.+.|+++..-.... ..-.+.|+..|........-+.|...+..|+...|.+
T Consensus 150 ~rLrkc~~~~aYG~avR~~~~A---~~~L~qY~~~psfq~~~~~seei~~rl~~qL~~rlr~ 208 (636)
T KOG2346|consen 150 RRLRKCGRAPAYGAAVRGSSEA---TGKLRQYDGRPSFQEDDVPSEEIRLRLVAQLGTKLRS 208 (636)
T ss_pred HHHHHhccccccchhhcccccc---ccchhhcCCCCcHHHhccchHHHHHHHHHHHHHHhcc
Confidence 3444445566676665543322 2345679999999988877777777777766655544
No 35
>PF08771 Rapamycin_bind: Rapamycin binding domain; InterPro: IPR009076 Rapamycin and FK506 are potent immunosuppressive agents that bind to the FK506-binding protein (FKBP12), inhibiting its peptidyl-prolyl isomerase activity. The rapamycin-FKBP12 complex can then bind to and inhibit the FKBP12-rapamycin-associated protein (FRAP) in humans and RAFT1 in rats, causing cell-cycle arrest []. The FK506-FKBP12 complex cannot bind FRAP, but can bind to and inhibit calcineurin. Rapamycin is able to bind to two proteins, FKBP12 and FRAP, by simultaneously occupying two hydrophobic binding pockets, thereby linking these two proteins together to form a dimer []. The structure of the FKBP12-rapamycin-binding domain of FRAP consists of a core bundle of four helices arranged up-and-down in a left-handed twist. FRAP has been shown to interact in vitro with CLIP-170, a protein involved in microtubule organisation and function []. FRAP is thought to act as a kinase to phosphorylate CLIP-170, thereby regulating its binding to microtubules. FRAP is also thought to cooperate with p85/p110 phosphatidylinositol 3-kinase (PI3K) to induce the activation of the serine/threonine kinase p70 S6 kinase (p70S6K), which in turn phosphorylates the 40S ribosomal protein S6, thereby altering the translation of ribosomal proteins and translation elongation factors [].; GO: 0016772 transferase activity, transferring phosphorus-containing groups; PDB: 2NPU_A 2RSE_B 4FAP_B 1AUE_A 2GAQ_A 1FAP_B 2FAP_B 3FAP_B 1NSG_B.
Probab=23.73 E-value=4e+02 Score=21.67 Aligned_cols=83 Identities=12% Similarity=0.260 Sum_probs=49.2
Q ss_pred HHHhhhhHhhhhhhHHHHHHHHHHHHHHHHH-HHHHHHHHhhcCHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHH
Q 019917 21 ICRDIKKLDFAKKHITTTITALHRLTMLVSA-VEQLQVMASKRQYKEAAAQLEAVNQLCSHFEAYRDIPKITELREKFKN 99 (334)
Q Consensus 21 It~DIk~LD~AKrNLT~SIT~LkrL~MLv~a-v~qL~~~~~~r~Y~e~a~lL~av~~L~~~F~~YksIp~I~~L~~~~~~ 99 (334)
--.+..++....+|+...+.+|..||-++.- =+.+....=.+.|+ ..|....+.+.-|..-++...+.+..+-+..
T Consensus 16 ~Le~As~~y~~~~n~~~m~~~L~pLh~~l~k~PeT~~E~~F~~~fg---~~L~~A~~~~~~y~~t~~~~~l~~aW~~y~~ 92 (100)
T PF08771_consen 16 ALEEASRLYFGENNVEKMFKILEPLHEMLEKGPETLREVSFAQAFG---RDLQEAREWLKRYERTGDETDLNQAWDIYYQ 92 (100)
T ss_dssp HHHHHHHHHHTTT-HHHHHHHHHHHHHHHHHS-SSHHHHHHHHHHH---HHHHHHHHHHHHHHHH--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH---HHHHHHHHHHHHHhhhCCHhhHHHHHHHHHH
Confidence 3345667777888999999999998877644 44444444444443 3445555555555555666666666666666
Q ss_pred HHHHHHH
Q 019917 100 IKQILKS 106 (334)
Q Consensus 100 i~~~L~~ 106 (334)
+-+.+..
T Consensus 93 v~~~i~~ 99 (100)
T PF08771_consen 93 VYRRIKK 99 (100)
T ss_dssp HHHHHTT
T ss_pred HHHHHhc
Confidence 6665543
No 36
>PRK12806 flagellin; Provisional
Probab=23.66 E-value=4.1e+02 Score=27.87 Aligned_cols=82 Identities=13% Similarity=0.236 Sum_probs=47.4
Q ss_pred HHHHHHHhhhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHH-hcccCCCchHHHHHHH
Q 019917 17 MVQEICRDIKKLDFAKKHITTTITALHRLTMLVSAVEQLQVMASKRQYKEAAAQLEAVNQLCS-HFEAYRDIPKITELRE 95 (334)
Q Consensus 17 ~V~eIt~DIk~LD~AKrNLT~SIT~LkrL~MLv~av~qL~~~~~~r~Y~e~a~lL~av~~L~~-~F~~YksIp~I~~L~~ 95 (334)
....|...|+.|+.|.+|+...|..|+. --.+++ ++.+.|+-+++|.- -=.+=.+-..-..+..
T Consensus 50 ia~~l~sqi~~l~qa~~N~~dgis~lqt---ae~aL~------------~i~~iLqr~reLavqaaNgt~s~~dR~ai~~ 114 (475)
T PRK12806 50 ISQRMTAQIRGMNQAVRNANDGISLAQV---AEGAMQ------------ETTNILQRMRELSVQAANSTNNSSDRASIQS 114 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH------------HHHHHHHHHHHHHHHhccCCCCHHHHHHHHH
Confidence 4456899999999999999998887654 111222 23344555555552 1122222344456666
Q ss_pred HHHHHHHHHHHHH-HHhhh
Q 019917 96 KFKNIKQILKSHV-FSDFS 113 (334)
Q Consensus 96 ~~~~i~~~L~~qI-~~DF~ 113 (334)
++..++..+..-. -.+|.
T Consensus 115 Ei~~L~~~i~~ian~t~fn 133 (475)
T PRK12806 115 EISQLKSELERIAQNTEFN 133 (475)
T ss_pred HHHHHHHHHHHHHhhCCcC
Confidence 7776666666532 24555
No 37
>COG5173 SEC6 Exocyst complex subunit SEC6 [Intracellular trafficking and secretion]
Probab=22.66 E-value=3.3e+02 Score=29.51 Aligned_cols=78 Identities=21% Similarity=0.285 Sum_probs=54.4
Q ss_pred ccccchhhhHHHHHHhhhh-hhhhcCcCCCcccccHHHHHHHHHHHHHHHHHHHH-hccCCCCHHHHHHHHHHHHHHHHH
Q 019917 170 AKLDKTERRYAWIKRRIRT-NEEIFKIFPPSWHVPYLLNIQFCKKTRKQLEGILD-NLTERPDVGTLLLALQRTIEFEDE 247 (334)
Q Consensus 170 ~~Ldni~RRy~Wfkr~L~~-~e~~~~iFP~~W~v~~~L~~~Fc~~Tr~dL~~lL~-~~~~~~dv~~Ll~aLq~Tl~FE~~ 247 (334)
.+++|++ |+-+-|.- ++.....|||+|++-.- |...=-+-|..+.. .-...++...+|.-|.--.+|-+.
T Consensus 281 sgelnmD----fIf~dL~~i~e~i~~~~pp~~NI~~~----y~~~YqecL~~L~td~v~~~~~a~~iL~ii~f~~~y~~t 352 (742)
T COG5173 281 SGELNMD----FIFKDLSFIRENISLSFPPFDNILTL----YHNNYQECLLKLFTDEVTERLDAGEILAIIEFVGNYYNT 352 (742)
T ss_pred cchhhhH----HHHHHHHHHHHHccccCCchHHHHHH----HHHHHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHH
Confidence 3455555 77677776 45566899999997544 44444444555553 445678888888888888889999
Q ss_pred HHHHhCCC
Q 019917 248 LAEKFGGD 255 (334)
Q Consensus 248 L~~rF~~~ 255 (334)
+...|+-.
T Consensus 353 ~e~~f~f~ 360 (742)
T COG5173 353 IESKFNFI 360 (742)
T ss_pred HHHhCCcc
Confidence 99998854
No 38
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=22.28 E-value=1e+03 Score=25.70 Aligned_cols=107 Identities=20% Similarity=0.266 Sum_probs=58.4
Q ss_pred chhHHHHHHHHHhHHHHHHHHHhhhhHhh-hhhhHHHHHHHHHH-------------------------HHHHHHHHHHH
Q 019917 2 YKIREIKNKAEQSETMVQEICRDIKKLDF-AKKHITTTITALHR-------------------------LTMLVSAVEQL 55 (334)
Q Consensus 2 ~kI~~Ik~kA~~SE~~V~eIt~DIk~LD~-AKrNLT~SIT~Lkr-------------------------L~MLv~av~qL 55 (334)
+.|.+|-..-.--|..+..|-.||+.|=. -++|=+..=-++-. |.-+-+.+.|-
T Consensus 104 ~~i~~ie~~l~~iE~~i~~il~~l~~Lv~sEekN~~~i~~~~ely~elr~~vl~n~~~~Ge~~~~lEk~Le~i~~~l~qf 183 (570)
T COG4477 104 HEIDDIEQQLTLIEEDIEQILEDLNELVESEEKNSEEIDHVLELYEELRRDVLANRHQYGEAAPELEKKLENIEEELSQF 183 (570)
T ss_pred hhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 34677777777888888888888887742 34554433333222 33333334444
Q ss_pred HHHHhhcCHHHHHHHHHHHHHHHHhcccCC-CchHH-HHHH----HHHHHHHHHHHHHH
Q 019917 56 QVMASKRQYKEAAAQLEAVNQLCSHFEAYR-DIPKI-TELR----EKFKNIKQILKSHV 108 (334)
Q Consensus 56 ~~~~~~r~Y~e~a~lL~av~~L~~~F~~Yk-sIp~I-~~L~----~~~~~i~~~L~~qI 108 (334)
..+....+|-+++..|..+.+.+.-...|. .||.+ +++- .++..++.-+++-+
T Consensus 184 ~~lt~~Gd~ieA~evl~~~ee~~~~L~~~~e~IP~L~~e~~~~lP~ql~~Lk~Gyr~m~ 242 (570)
T COG4477 184 VELTSSGDYIEAREVLEEAEEHMIALRSIMERIPSLLAELQTELPGQLQDLKAGYRDMK 242 (570)
T ss_pred HHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHH
Confidence 444455666666666666666665555553 35554 3332 33445554444433
No 39
>PRK12808 flagellin; Provisional
Probab=22.09 E-value=4.9e+02 Score=27.44 Aligned_cols=27 Identities=7% Similarity=0.143 Sum_probs=22.9
Q ss_pred HHHHHHHhhhhHhhhhhhHHHHHHHHH
Q 019917 17 MVQEICRDIKKLDFAKKHITTTITALH 43 (334)
Q Consensus 17 ~V~eIt~DIk~LD~AKrNLT~SIT~Lk 43 (334)
....|..+|..|+.+.+|+...+..|+
T Consensus 48 IA~rLrsqiagL~Qa~rNi~dgiS~LQ 74 (476)
T PRK12808 48 IATRMRARESGLGVAANNTQDGMSLIR 74 (476)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788899999999999999988766
No 40
>PRK13589 flagellin; Provisional
Probab=22.05 E-value=4.6e+02 Score=28.29 Aligned_cols=82 Identities=13% Similarity=0.174 Sum_probs=48.6
Q ss_pred HHHHHHHhhhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHh-cccCCCchHHHHHHH
Q 019917 17 MVQEICRDIKKLDFAKKHITTTITALHRLTMLVSAVEQLQVMASKRQYKEAAAQLEAVNQLCSH-FEAYRDIPKITELRE 95 (334)
Q Consensus 17 ~V~eIt~DIk~LD~AKrNLT~SIT~LkrL~MLv~av~qL~~~~~~r~Y~e~a~lL~av~~L~~~-F~~YksIp~I~~L~~ 95 (334)
....|..+|..|++|.+|+...+..|+. --.+++ ++.+.|+-+++|+-. =..=.+-..-..+..
T Consensus 50 IA~rLrsQi~gL~Qa~rNandgiS~LQT---AEgAL~------------ei~diLQRmRELAVQAANGT~S~~DR~AIq~ 114 (576)
T PRK13589 50 IADSLRSQAATLGQAINNGNDAIGILQT---ADKAMD------------EQLKILDTIKTKATQAAQDGQSLKTRTMLQA 114 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH------------HHHHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 4568899999999999999988877543 222222 233445555555532 112223344555666
Q ss_pred HHHHHHHHHHHHHH-Hhhh
Q 019917 96 KFKNIKQILKSHVF-SDFS 113 (334)
Q Consensus 96 ~~~~i~~~L~~qI~-~DF~ 113 (334)
++..++..|..-.- .+|.
T Consensus 115 El~qL~eeI~~IANtTsfN 133 (576)
T PRK13589 115 DINRLMEELDNIANTTSFN 133 (576)
T ss_pred HHHHHHHHHHHHHhhCCcC
Confidence 77776666665222 1565
No 41
>PRK13588 flagellin B; Provisional
Probab=21.88 E-value=4.5e+02 Score=27.87 Aligned_cols=82 Identities=10% Similarity=0.167 Sum_probs=50.1
Q ss_pred HHHHHHHhhhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHh-cccCCCchHHHHHHH
Q 019917 17 MVQEICRDIKKLDFAKKHITTTITALHRLTMLVSAVEQLQVMASKRQYKEAAAQLEAVNQLCSH-FEAYRDIPKITELRE 95 (334)
Q Consensus 17 ~V~eIt~DIk~LD~AKrNLT~SIT~LkrL~MLv~av~qL~~~~~~r~Y~e~a~lL~av~~L~~~-F~~YksIp~I~~L~~ 95 (334)
....|...|..|++|.+|+...|..|+. --.++++ +.++|+-+++|+-. =..=.+-..-..+..
T Consensus 50 ia~~l~sqi~~l~Qa~~N~~dgis~lqt---ae~aL~~------------i~~iLqrireLavqAaNgt~s~~dR~aiq~ 114 (514)
T PRK13588 50 IADSLRSQSANLGQAIRNANDAIGMVQT---ADKAMDE------------QIKILDTIKTKAVQAAQDGQTLESRRALQS 114 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH------------HHHHHHHHHHHHHHhhcCCCCHHHHHHHHH
Confidence 5578899999999999999998887543 3333333 33455666666532 222223345566667
Q ss_pred HHHHHHHHHHHHHH-Hhhh
Q 019917 96 KFKNIKQILKSHVF-SDFS 113 (334)
Q Consensus 96 ~~~~i~~~L~~qI~-~DF~ 113 (334)
++..++..+..-.- .+|+
T Consensus 115 Ei~qL~~eI~~iantt~fn 133 (514)
T PRK13588 115 DIQRLLEELDNIANTTSFN 133 (514)
T ss_pred HHHHHHHHHHHHHhcCCcC
Confidence 77777766665322 1565
No 42
>COG4817 DNA-binding ferritin-like protein (Dps family) [General function prediction only]
Probab=21.50 E-value=1.1e+02 Score=25.83 Aligned_cols=28 Identities=32% Similarity=0.527 Sum_probs=21.2
Q ss_pred hhhHHHhcChhHHHHHHHHHHHHhHHHHHHhcC
Q 019917 133 ACLVVDALEPSVREELVNNFCRRELTSYEQIFE 165 (334)
Q Consensus 133 aC~vvD~L~~~~k~~lI~wf~~~~L~eY~~iF~ 165 (334)
.=.|.|++|+++ .-||+..|.+|...|.
T Consensus 68 gk~v~dv~GdDv-----A~F~D~Ll~D~~ktw~ 95 (111)
T COG4817 68 GKEVTDVLGDDV-----ATFCDALLGDYEKTWR 95 (111)
T ss_pred cccHHHHhcchH-----HHHHHHHHcchHHHHH
Confidence 345778899885 5689999998876665
No 43
>TIGR01639 P_fal_TIGR01639 Plasmodium falciparum uncharacterized domain TIGR01639. This model represents a conserved sequence region of about 60 amino acids found in over 40 predicted proteins of Plasmodium falciparum. It is not found elsewhere, including closely related species such as Plasmodium yoelii. No member of this family is characterized.
Probab=21.19 E-value=2.2e+02 Score=21.16 Aligned_cols=36 Identities=19% Similarity=0.452 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHH
Q 019917 212 KKTRKQLEGILDNLTERPDVGTLLLALQRTIEFEDE 247 (334)
Q Consensus 212 ~~Tr~dL~~lL~~~~~~~dv~~Ll~aLq~Tl~FE~~ 247 (334)
.+|.++|..+|....+.++..-++.--..+..+|+.
T Consensus 9 ~lTeEEl~~~i~~L~~~~~~~dm~~IW~~v~~~er~ 44 (61)
T TIGR01639 9 KLSKEELNELINSLDEIPNRNDMLIIWNQVHGIERD 44 (61)
T ss_pred HccHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHH
Confidence 468999999999999999999988888888888864
No 44
>PF08372 PRT_C: Plant phosphoribosyltransferase C-terminal; InterPro: IPR013583 This domain is found at the C terminus of phosphoribosyltransferases and phosphoribosyltransferase-like proteins. It contains putative transmembrane regions. It often appears together with calcium-ion dependent C2 domains (IPR000008 from INTERPRO).
Probab=20.31 E-value=83 Score=28.11 Aligned_cols=27 Identities=15% Similarity=0.181 Sum_probs=18.2
Q ss_pred hhcCCCCCCCCChHHHHHHHHHHHHhc
Q 019917 266 EEIGRPENNRQNVSDIRKKYERKLAAN 292 (334)
Q Consensus 266 ~~~~~~~~~~~~a~~ir~k~e~~~~~~ 292 (334)
+|+-++-.++...+.+|.||.+.....
T Consensus 42 dEEfD~~ps~~~~~~lr~Rydrlr~va 68 (156)
T PF08372_consen 42 DEEFDTFPSSRPPDSLRMRYDRLRSVA 68 (156)
T ss_pred hhhhcccccccccHHHHHHHHHHHHHH
Confidence 334333336777899999999876543
No 45
>PF04108 APG17: Autophagy protein Apg17 ; InterPro: IPR007240 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Autophagy protein 17 (Apg17) is required for activating Apg1 protein kinases. This entry also contains Autophagy protein 11 which is involved in cytoplasm to vacuole transport (Cvt) and pexophagy. ; GO: 0006914 autophagy
Probab=20.24 E-value=9.2e+02 Score=24.50 Aligned_cols=27 Identities=15% Similarity=0.271 Sum_probs=17.9
Q ss_pred HhHHHHHHHHHhhhhHhhhhhhHHHHH
Q 019917 13 QSETMVQEICRDIKKLDFAKKHITTTI 39 (334)
Q Consensus 13 ~SE~~V~eIt~DIk~LD~AKrNLT~SI 39 (334)
.-+.|+.-+.+|-..|+-.=+=|...+
T Consensus 238 e~~e~l~Vl~~Da~El~~V~~el~~~~ 264 (412)
T PF04108_consen 238 ERQEMLEVLENDAQELPDVVKELQERL 264 (412)
T ss_pred HHHHHHHHHHcchhhHHHHHHHHHHHH
Confidence 345688888888888876655554443
Done!