Query 019917
Match_columns 334
No_of_seqs 115 out of 173
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 09:01:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019917.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019917hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2d2s_A Exocyst complex compone 94.2 3.2 0.00011 37.7 19.1 187 43-244 13-208 (235)
2 4aj5_K Spindle and kinetochore 35.8 60 0.0021 26.8 5.4 49 2-50 50-99 (123)
3 3k8w_A Flagellin homolog; flag 31.0 1.9E+02 0.0066 27.4 8.9 84 16-114 29-114 (326)
4 3v47_C Flagellin; innate immun 29.3 93 0.0032 30.7 6.5 83 16-113 8-92 (425)
5 1io1_A Phase 1 flagellin; beta 26.2 1.5E+02 0.005 28.7 7.3 71 21-106 1-72 (398)
6 1wlx_A Alpha-actinin 4; three- 25.0 2.3E+02 0.0077 23.4 7.2 74 28-102 28-112 (129)
7 3pwx_A Putative flagellar HOOK 23.9 1.6E+02 0.0054 26.2 6.6 82 17-114 12-96 (239)
8 1ceu_A Protein (HIV-1 regulato 22.3 21 0.00073 25.1 0.3 23 180-202 17-40 (51)
9 4gkw_A Spindle assembly abnorm 22.0 3.1E+02 0.011 23.0 7.4 49 8-56 85-146 (167)
10 2d2s_A Exocyst complex compone 19.8 4.6E+02 0.016 23.2 12.8 23 142-165 166-188 (235)
No 1
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=94.20 E-value=3.2 Score=37.72 Aligned_cols=187 Identities=12% Similarity=0.098 Sum_probs=111.0
Q ss_pred HHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhcccC---CCchHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCC
Q 019917 43 HRLTMLVSAVEQLQVMASKRQYKEAAAQLEAVNQLCSHFEAY---RDIPKITELREKFKNIKQILKSHVFSDFSSLGTGK 119 (334)
Q Consensus 43 krL~MLv~av~qL~~~~~~r~Y~e~a~lL~av~~L~~~F~~Y---ksIp~I~~L~~~~~~i~~~L~~qI~~DF~~~~~~~ 119 (334)
+++.=+.+..|.|...+..|+|.+++.+++....++...++= .+.+.+..+..+++.-+..|.+++..+... ..
T Consensus 13 ~~~~wl~~~~deLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~--~~- 89 (235)
T 2d2s_A 13 QRLKFLDEGVEEIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS--SN- 89 (235)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT--CS-
T ss_pred hhHHHHHcccHHHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh--cC-
Confidence 345556677799999999999999999999999999766531 235556778888888888888888877754 11
Q ss_pred CchhhhhhHhHhhhhhHHHhcCh--hHHHHHHHHHHHHhHHHHHHh-cCCcccccccchhhhHHHHHHhhhhhhhhcCcC
Q 019917 120 ETEETNLLQQLSDACLVVDALEP--SVREELVNNFCRRELTSYEQI-FEGAELAKLDKTERRYAWIKRRIRTNEEIFKIF 196 (334)
Q Consensus 120 ~~~~~~~~~~L~~aC~vvD~L~~--~~k~~lI~wf~~~~L~eY~~i-F~~~Ea~~Ldni~RRy~Wfkr~L~~~e~~~~iF 196 (334)
. ...++.+...+--||. .+++-+++..-+..=+.-+++ |.++...-+-++. +.+|.-+-+..++.-.+|
T Consensus 90 ~------~~~~r~~v~~L~rLg~~~~A~~lfL~~rs~~i~~~~r~l~~~gd~~~Yi~~Ls--~i~Fs~I~~t~~~f~~~F 161 (235)
T 2d2s_A 90 E------IVHLKSGTENMIKLGLPEQALDLFLQNRSNFIQDLILQIGSVDNPTNYLTQLA--VIRFQTIKKTVEDFQDIF 161 (235)
T ss_dssp S------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHCC--CCSHHHHHHHHH--HHHHHHHHHHHHHHHHHS
T ss_pred C------HHHHHHHHHHHHHCCChhHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHH--HHHHHHHHHHHHHHHHHh
Confidence 1 2456677777777775 455556665555544444554 3333334444555 455555555555544688
Q ss_pred CCcccccHHHHHHHHHHHHHHH---HHHHHhccCCCCHHHHHHHHHHHHHH
Q 019917 197 PPSWHVPYLLNIQFCKKTRKQL---EGILDNLTERPDVGTLLLALQRTIEF 244 (334)
Q Consensus 197 P~~W~v~~~L~~~Fc~~Tr~dL---~~lL~~~~~~~dv~~Ll~aLq~Tl~F 244 (334)
|++ +-..+..|+..-+.++ ..++.+.--. +..+.-++++.+...
T Consensus 162 ~~~---~~~~~S~lV~Wa~~eve~f~~l~~rqv~~-~~~l~~ecv~i~~~~ 208 (235)
T 2d2s_A 162 KEL---GAKISSILVDWCSDEVDNHFKLIDKQLLN-DEMLSPGSIKSSRKQ 208 (235)
T ss_dssp TTC---CHHHHHHHHHHHHHHHHHHHHHHHHHTTC----CCHHHHHHHHHH
T ss_pred CCC---CcccccHHHHHHHHHHHHHHHHHHHHccC-CccHHHHHHHHHHHH
Confidence 875 2234444444444444 3444322111 333333666655544
No 2
>4aj5_K Spindle and kinetochore-associated protein 2; cell cycle, SKA complex, mitosis, cell division, kinetochore microtubule attachment; 3.32A {Homo sapiens}
Probab=35.77 E-value=60 Score=26.76 Aligned_cols=49 Identities=8% Similarity=0.112 Sum_probs=37.1
Q ss_pred chhHHHHHHHHHhHHHHHHHHHhh-hhHhhhhhhHHHHHHHHHHHHHHHH
Q 019917 2 YKIREIKNKAEQSETMVQEICRDI-KKLDFAKKHITTTITALHRLTMLVS 50 (334)
Q Consensus 2 ~kI~~Ik~kA~~SE~~V~eIt~DI-k~LD~AKrNLT~SIT~LkrL~MLv~ 50 (334)
.+|..||++-..--..++.|...= ...|.+...|..+|+..+|||--++
T Consensus 50 ~~LsaIk~ry~~L~~q~~~iaaeQke~~d~ir~tL~~tm~miQ~LQ~~td 99 (123)
T 4aj5_K 50 KELSVIKSRYQTLYARFKPVAVEQKESKSRICATVKKTMNMIQKLQKQTD 99 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 456777777666555556665555 4578999999999999999998776
No 3
>3k8w_A Flagellin homolog; flagellum, structural protein, bacterial flagellu; 1.70A {Sphingomonas SP} PDB: 2zbi_A 3k8v_A
Probab=30.99 E-value=1.9e+02 Score=27.44 Aligned_cols=84 Identities=13% Similarity=0.222 Sum_probs=54.2
Q ss_pred HHHHHHHHhhhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhc-ccCCCchHHHHHH
Q 019917 16 TMVQEICRDIKKLDFAKKHITTTITALHRLTMLVSAVEQLQVMASKRQYKEAAAQLEAVNQLCSHF-EAYRDIPKITELR 94 (334)
Q Consensus 16 ~~V~eIt~DIk~LD~AKrNLT~SIT~LkrL~MLv~av~qL~~~~~~r~Y~e~a~lL~av~~L~~~F-~~YksIp~I~~L~ 94 (334)
.....|..+|+.|+.+++|+...+..|+- --+++. ++.+.|+-+++|+.-= ..=.+-..-..+.
T Consensus 29 aia~~L~sqi~~l~Q~~rN~~da~S~Lqt---AE~AL~------------~i~diLqrmRELaVQAaNgT~s~~DR~aIa 93 (326)
T 3k8w_A 29 AISDRMTAQIKGLTQAQRNANDGISLAQT---AEGALG------------EISNNLQRIRELAVQASNGTNTQTDRDALQ 93 (326)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH------------HHHHHHHHHHHHHHHHTSTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH------------HHHHHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 35678999999999999999999887653 222222 3445566666666322 2222345566777
Q ss_pred HHHHHHHHHHHHHHH-Hhhhh
Q 019917 95 EKFKNIKQILKSHVF-SDFSS 114 (334)
Q Consensus 95 ~~~~~i~~~L~~qI~-~DF~~ 114 (334)
.++..++..|..-.- .+|..
T Consensus 94 ~Ei~qL~~eI~~iANsT~fNG 114 (326)
T 3k8w_A 94 AEVTQLQSEIQRVAEQTSFNG 114 (326)
T ss_dssp HHHHHHHHHHHHHHHHCEETT
T ss_pred HHHHHHHHHHHHHHhhCCcCC
Confidence 888888887776333 36763
No 4
>3v47_C Flagellin; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Salmonella enterica subsp}
Probab=29.30 E-value=93 Score=30.71 Aligned_cols=83 Identities=13% Similarity=0.216 Sum_probs=37.6
Q ss_pred HHHHHHHHhhhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHH-hcccCCCchHHHHHH
Q 019917 16 TMVQEICRDIKKLDFAKKHITTTITALHRLTMLVSAVEQLQVMASKRQYKEAAAQLEAVNQLCS-HFEAYRDIPKITELR 94 (334)
Q Consensus 16 ~~V~eIt~DIk~LD~AKrNLT~SIT~LkrL~MLv~av~qL~~~~~~r~Y~e~a~lL~av~~L~~-~F~~YksIp~I~~L~ 94 (334)
++...|..+|+.|+++.||+...|..|+- --.+++ ++.+.|+-|++|.. -=..=.+-..-..+.
T Consensus 8 AIa~~lrsqi~gl~Qa~rN~~dgiS~lqt---AEgAL~------------~i~~iLqRmRELaVQAaNgT~s~~DR~aIq 72 (425)
T 3v47_C 8 AIANRFTSNIKGLTQASRNANDGISIAQT---TEGALN------------EINNNLQRVRELSVQATNGTNSDSDLKSIQ 72 (425)
T ss_dssp ----------------CHHHHHHHHHHHH---HHHHHH------------HHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH------------HHHHHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 45677899999999999999999987753 222222 34455556666652 111212334456667
Q ss_pred HHHHHHHHHHHHHHH-Hhhh
Q 019917 95 EKFKNIKQILKSHVF-SDFS 113 (334)
Q Consensus 95 ~~~~~i~~~L~~qI~-~DF~ 113 (334)
.++..|+..|..-.- .+|.
T Consensus 73 ~Ei~qL~~eI~~Ian~T~fN 92 (425)
T 3v47_C 73 DEIQQRLEEIDRVSNQTQFN 92 (425)
T ss_dssp HHHHHHHHHHHHHHHHCEET
T ss_pred HHHHHHHHHHHHHHhhCCcC
Confidence 777777777666332 4565
No 5
>1io1_A Phase 1 flagellin; beta-folium, structural protein; 2.00A {Salmonella typhimurium} SCOP: e.32.1.1
Probab=26.17 E-value=1.5e+02 Score=28.71 Aligned_cols=71 Identities=14% Similarity=0.208 Sum_probs=42.0
Q ss_pred HHHhhhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHh-cccCCCchHHHHHHHHHHH
Q 019917 21 ICRDIKKLDFAKKHITTTITALHRLTMLVSAVEQLQVMASKRQYKEAAAQLEAVNQLCSH-FEAYRDIPKITELREKFKN 99 (334)
Q Consensus 21 It~DIk~LD~AKrNLT~SIT~LkrL~MLv~av~qL~~~~~~r~Y~e~a~lL~av~~L~~~-F~~YksIp~I~~L~~~~~~ 99 (334)
|..+|+.|+++.+|+...+..|+- --.++ .++.+.|+-|++|... =..=.+-..-..+..++..
T Consensus 1 ~~~~i~~l~q~~~N~~~~~s~lqt---ae~aL------------~~i~~~Lqr~relavqaangt~s~~dr~ai~~Ei~~ 65 (398)
T 1io1_A 1 FTANIKGLTQASRNANDGISIAQT---TEGAL------------NEINNNLQRVRELAVQSANSTNSQSDLDSIQAEITQ 65 (398)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHH---HHHHH------------HHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHH---HHHHH------------HHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 467899999999999999887653 22222 2344556666666632 1121233444666677777
Q ss_pred HHHHHHH
Q 019917 100 IKQILKS 106 (334)
Q Consensus 100 i~~~L~~ 106 (334)
++..|..
T Consensus 66 l~~ei~~ 72 (398)
T 1io1_A 66 RLNEIDR 72 (398)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7776665
No 6
>1wlx_A Alpha-actinin 4; three-helix bundle, protein binding; NMR {Homo sapiens}
Probab=25.02 E-value=2.3e+02 Score=23.36 Aligned_cols=74 Identities=14% Similarity=0.271 Sum_probs=50.4
Q ss_pred HhhhhhhHHHHHH--HHHHHHHHHHHHHHHHHHHh--hcCHHHHHHHHHHHHHHHHhcc-------cCCCchHHHHHHHH
Q 019917 28 LDFAKKHITTTIT--ALHRLTMLVSAVEQLQVMAS--KRQYKEAAAQLEAVNQLCSHFE-------AYRDIPKITELREK 96 (334)
Q Consensus 28 LD~AKrNLT~SIT--~LkrL~MLv~av~qL~~~~~--~r~Y~e~a~lL~av~~L~~~F~-------~YksIp~I~~L~~~ 96 (334)
+|.|.-.|+..+. +|.=.+-|..+.++.+.-+. ...+..++.+-+.+.++...+. ||..|. ...|.++
T Consensus 28 ~e~A~EdL~D~~~v~sleEI~~L~~~He~F~~~L~~a~~e~~~i~~i~~el~~~~~~~~~~~~~~npYT~it-~~~l~~~ 106 (129)
T 1wlx_A 28 MESAMEDLQDMFIVHTIEEIEGLISAHDQFKSTLPDADREREAILAIHKEAQRIAESNHIKLSGSNPYTTVT-PQIINSK 106 (129)
T ss_dssp HHHHHHHHHSCCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCSSSCSSCCCC-HHHHHHH
T ss_pred HHhHHHHhccchhhccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCCCCCCccch-HHHHHHH
Confidence 4556666664432 56667778888888877664 4678888888899999987777 898765 4444444
Q ss_pred HHHHHH
Q 019917 97 FKNIKQ 102 (334)
Q Consensus 97 ~~~i~~ 102 (334)
-+.++.
T Consensus 107 W~~l~~ 112 (129)
T 1wlx_A 107 WEKVQQ 112 (129)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444443
No 7
>3pwx_A Putative flagellar HOOK-associated protein; structural genomics, structural protein, PSI-2, protein STRU initiative; 2.50A {Vibrio parahaemolyticus}
Probab=23.85 E-value=1.6e+02 Score=26.25 Aligned_cols=82 Identities=10% Similarity=0.120 Sum_probs=51.0
Q ss_pred HHHHHHHhhhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhc--ccCCCchHHHHHH
Q 019917 17 MVQEICRDIKKLDFAKKHITTTITALHRLTMLVSAVEQLQVMASKRQYKEAAAQLEAVNQLCSHF--EAYRDIPKITELR 94 (334)
Q Consensus 17 ~V~eIt~DIk~LD~AKrNLT~SIT~LkrL~MLv~av~qL~~~~~~r~Y~e~a~lL~av~~L~~~F--~~YksIp~I~~L~ 94 (334)
....|...|..|+.+++|+...+..|+- --+++.+ +.+.|+-+++|+.-= ..|. -..-..+.
T Consensus 12 ~~~~l~~~i~~l~q~~~N~~~a~s~l~~---ae~aL~~------------i~~~l~r~rel~vqa~ngt~s-~~dr~ai~ 75 (239)
T 3pwx_A 12 KLLNLERENSAIAQYQSNIANLKTTLSS---QETHLDS------------VSESLKSMRDIVLWGANGSLT-DQDRSGMI 75 (239)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH------------HHHHHHHHHHHHHHHSCSSCC-TTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH------------HHHHHHHHHHHHHHHhcCCCC-HHHHHHHH
Confidence 4567899999999999999998876654 3333333 344555566665321 2232 34556677
Q ss_pred HHHHHHHHHHHHHHHH-hhhh
Q 019917 95 EKFKNIKQILKSHVFS-DFSS 114 (334)
Q Consensus 95 ~~~~~i~~~L~~qI~~-DF~~ 114 (334)
.++..++..|..-.-. ||..
T Consensus 76 ~E~~~l~~~i~~iaNt~~~nG 96 (239)
T 3pwx_A 76 TELKSYRDSIESSFNAQDEEG 96 (239)
T ss_dssp HHHHHHHHHHHHHHTCBCTTC
T ss_pred HHHHHHHHHHHHHHcccccCC
Confidence 7777777776663322 4653
No 8
>1ceu_A Protein (HIV-1 regulatory protein N-terminal domain VPR); helical domain, amphipaticity, viral protein; NMR {Synthetic} SCOP: j.11.1.1 PDB: 1fi0_A
Probab=22.26 E-value=21 Score=25.11 Aligned_cols=23 Identities=17% Similarity=0.426 Sum_probs=19.9
Q ss_pred HHHHHhhhhhhhhc-CcCCCcccc
Q 019917 180 AWIKRRIRTNEEIF-KIFPPSWHV 202 (334)
Q Consensus 180 ~Wfkr~L~~~e~~~-~iFP~~W~v 202 (334)
-|..++|.+..+.+ ..||..|-.
T Consensus 17 eW~le~LeElk~EAvrHFpr~~L~ 40 (51)
T 1ceu_A 17 DWTLELLEELKNEAVRHFPRIWLH 40 (51)
T ss_dssp HHHHHHHHHHHHHTTTSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHH
Confidence 69999999988878 899999843
No 9
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=21.96 E-value=3.1e+02 Score=22.95 Aligned_cols=49 Identities=24% Similarity=0.342 Sum_probs=0.0
Q ss_pred HHHHHHhHHHH-----HHHHHhhhhHhhhhhhHHHHHHHHHH--------HHHHHHHHHHHH
Q 019917 8 KNKAEQSETMV-----QEICRDIKKLDFAKKHITTTITALHR--------LTMLVSAVEQLQ 56 (334)
Q Consensus 8 k~kA~~SE~~V-----~eIt~DIk~LD~AKrNLT~SIT~Lkr--------L~MLv~av~qL~ 56 (334)
|...+++++.+ .++-.|.|.=|..=-|||.||.+|+. ++-.+++++.|+
T Consensus 85 rn~~qQnQQSlDiRKLrELEADLKEKDsMVe~LT~TiG~LrKELEdEklK~~E~MdSFE~Lk 146 (167)
T 4gkw_A 85 RNSQQQNQQSLDMRKLGELEADLKEKDSMVESLTETIGILRKELENEKLKAAENMDSFEKLS 146 (167)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHhHhhhhHHHHHHHHhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 10
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=19.85 E-value=4.6e+02 Score=23.17 Aligned_cols=23 Identities=17% Similarity=0.378 Sum_probs=18.9
Q ss_pred hhHHHHHHHHHHHHhHHHHHHhcC
Q 019917 142 PSVREELVNNFCRRELTSYEQIFE 165 (334)
Q Consensus 142 ~~~k~~lI~wf~~~~L~eY~~iF~ 165 (334)
+..-..+|.| |..++..|-.+|.
T Consensus 166 ~~~~S~lV~W-a~~eve~f~~l~~ 188 (235)
T 2d2s_A 166 AKISSILVDW-CSDEVDNHFKLID 188 (235)
T ss_dssp HHHHHHHHHH-HHHHHHHHHHHHH
T ss_pred cccccHHHHH-HHHHHHHHHHHHH
Confidence 4677889999 8888888888775
Done!