BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 019918
         (334 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q43794|SYE_TOBAC Glutamate--tRNA ligase, chloroplastic/mitochondrial OS=Nicotiana
           tabacum PE=2 SV=1
          Length = 569

 Score = 32.7 bits (73), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 43/91 (47%), Gaps = 19/91 (20%)

Query: 217 FTESLLERGVLVVSFTTDGNIPSFEFEESEEMKEFTRKRKRLWQLTPVYVSEWSKWLDEQ 276
           F E LL+ G +   F ++        EE E+MKE  +    L QL PVY   W+   +E+
Sbjct: 146 FAEKLLQSGHVYRCFCSN--------EELEKMKEIAK----LKQLPPVYTGRWASATEEE 193

Query: 277 --KRTAGISPES-----PVYLSLRLDGRVRG 300
             +  A  +P +     P   SL++D  +RG
Sbjct: 194 VVEELAKGTPYTYRFRVPKEGSLKIDDLIRG 224


>sp|Q2YVR0|Y390_STAAB Uncharacterized lipoprotein SAB0390/SAB0391 OS=Staphylococcus
           aureus (strain bovine RF122 / ET3-1) GN=SAB0390/SAB0391
           PE=3 SV=2
          Length = 260

 Score = 32.3 bits (72), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 20/76 (26%)

Query: 230 SFTTDGNIPSFEFEESEEMKEFTRKRKRLWQLTPVYVSEWSKWLDEQKRTAGISPESPVY 289
           S TT+ N+PS+E E   ++       K+L ++ P+                  + +SPV 
Sbjct: 175 SITTNENVPSYEAEF--KLNNSDENVKKLREVYPI-----------------TTKKSPV- 214

Query: 290 LSLRLDGRVRGSGVGY 305
           L L +DG ++GS +GY
Sbjct: 215 LKLHIDGDIKGSSIGY 230


>sp|Q9VI55|UFL1_DROME E3 UFM1-protein ligase 1 homolog OS=Drosophila melanogaster
           GN=CG1104 PE=1 SV=1
          Length = 782

 Score = 32.0 bits (71), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 17/54 (31%), Positives = 34/54 (62%)

Query: 130 ADVPEILKGLSIDVSAVSLFAFLYSRENKAKNAQLARLSREESLSNLKLRVDEK 183
           A++ E+ K L++D+S + L A   S EN++ +  L +L  E+ +S++   ++EK
Sbjct: 77  ANLVEVSKTLNVDLSRIELLAERISAENQSVHLVLGQLIDEDYISHIAQEINEK 130


>sp|O72539|DPOL_ADEB2 DNA polymerase OS=Bovine adenovirus 2 GN=POL PE=3 SV=1
          Length = 1017

 Score = 31.6 bits (70), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 27/101 (26%), Positives = 46/101 (45%), Gaps = 8/101 (7%)

Query: 155 RENKAKNAQL---ARLSREESLSNLKLRVDEKKIISVNNLRGIARLVICSGPASYIMESF 211
           + +K KN  +   A+L       +   ++D KKI+  + L   A   I  G  S    SF
Sbjct: 648 KADKEKNQTMRSIAKLLSNALYGSFATKLDNKKIVFSDQLEASASKTIARGNFSIKSSSF 707

Query: 212 KRSEPFTESLLERGVLVVSFTTDGNIPSFEFEESEEMKEFT 252
             ++ F+  ++     VV++      PS E +ES+E +E T
Sbjct: 708 IETDNFSAEIMPE--FVVTYPP---APSAELDESDENEEHT 743


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.320    0.135    0.401 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 122,468,374
Number of Sequences: 539616
Number of extensions: 4942203
Number of successful extensions: 12595
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 12581
Number of HSP's gapped (non-prelim): 17
length of query: 334
length of database: 191,569,459
effective HSP length: 118
effective length of query: 216
effective length of database: 127,894,771
effective search space: 27625270536
effective search space used: 27625270536
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)