Query 019919
Match_columns 334
No_of_seqs 228 out of 736
Neff 3.7
Searched_HMMs 29240
Date Mon Mar 25 09:03:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019919.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019919hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1gnf_A Transcription factor GA 99.6 7.8E-16 2.7E-20 110.8 4.5 39 224-263 2-40 (46)
2 2vut_I AREA, nitrogen regulato 99.6 5.4E-16 1.8E-20 110.2 2.8 36 227-263 2-37 (43)
3 3dfx_A Trans-acting T-cell-spe 99.6 9.1E-16 3.1E-20 117.0 3.4 50 225-278 6-55 (63)
4 4gat_A Nitrogen regulatory pro 99.6 1E-15 3.4E-20 117.6 2.6 52 224-279 7-58 (66)
5 2kae_A GATA-type transcription 99.4 1.3E-14 4.5E-19 112.8 1.4 44 224-270 6-49 (71)
6 4hc9_A Trans-acting T-cell-spe 99.4 2.7E-13 9.3E-18 113.3 4.4 50 225-278 58-107 (115)
7 4hc9_A Trans-acting T-cell-spe 99.1 2E-11 6.8E-16 102.1 2.2 37 224-261 3-39 (115)
8 1pft_A TFIIB, PFTFIIBN; N-term 71.5 1.2 4.2E-05 30.9 0.9 41 226-269 5-47 (50)
9 1dl6_A Transcription factor II 66.4 3 0.0001 30.4 2.1 42 226-270 11-54 (58)
10 1qyp_A RNA polymerase II; tran 61.5 1.8 6.3E-05 31.0 0.2 35 226-260 15-55 (57)
11 2yrk_A Zinc finger homeobox pr 59.0 2.9 9.8E-05 31.2 0.8 19 241-259 6-24 (55)
12 3k7a_M Transcription initiatio 53.3 8.1 0.00028 36.5 3.2 42 226-269 21-65 (345)
13 3cw2_K Translation initiation 45.3 10 0.00036 32.3 2.3 31 226-257 103-133 (139)
14 2d74_B Translation initiation 43.7 11 0.00036 32.7 2.1 31 227-258 105-135 (148)
15 2b0o_E UPLC1; arfgap, structur 38.9 11 0.00037 33.9 1.5 30 225-256 41-70 (301)
16 3po3_S Transcription elongatio 37.4 11 0.00039 32.9 1.4 34 226-259 137-176 (178)
17 1pqv_S STP-alpha, transcriptio 36.2 8.9 0.0003 36.2 0.5 34 226-259 268-307 (309)
18 1tfi_A Transcriptional elongat 35.9 8.9 0.0003 27.3 0.3 35 225-259 8-48 (50)
19 1nee_A EIF-2-beta, probable tr 35.1 11 0.00037 32.2 0.8 30 227-257 103-132 (138)
20 2iqj_A Stromal membrane-associ 33.6 13 0.00045 31.4 1.0 34 225-260 26-59 (134)
21 2owa_A Arfgap-like finger doma 33.1 13 0.00046 31.6 1.0 34 225-260 35-68 (138)
22 2crr_A Stromal membrane-associ 31.7 16 0.00056 31.0 1.4 46 225-272 28-74 (141)
23 2crw_A ARF GAP 3, ADP-ribosyla 29.2 23 0.00078 30.6 1.9 46 225-272 28-74 (149)
24 3dwd_A ADP-ribosylation factor 28.9 21 0.0007 31.0 1.5 34 225-260 37-70 (147)
25 1k81_A EIF-2-beta, probable tr 28.6 5.9 0.0002 26.5 -1.5 30 228-258 2-31 (36)
26 2p57_A GTPase-activating prote 28.0 15 0.00051 31.7 0.5 43 225-269 36-79 (144)
27 2zjr_Z 50S ribosomal protein L 27.6 20 0.00067 26.6 1.0 29 225-264 29-57 (60)
28 3cng_A Nudix hydrolase; struct 26.5 22 0.00076 29.6 1.3 30 226-255 3-32 (189)
29 1jh4_B PAIP1, polyadenylate-bi 25.1 21 0.00072 22.9 0.7 10 3-12 10-19 (26)
30 2olm_A Nucleoporin-like protei 24.3 24 0.00083 29.9 1.1 34 225-260 24-57 (140)
31 2yrc_A Protein transport prote 23.7 22 0.00076 26.1 0.7 41 225-268 8-50 (59)
32 3jue_A Arfgap with coiled-coil 23.7 29 0.00099 32.6 1.6 29 225-255 44-72 (368)
33 2bsj_A Chaperone protein SYCT; 22.7 16 0.00056 30.9 -0.3 16 114-129 95-111 (133)
34 3v2d_5 50S ribosomal protein L 22.0 20 0.00068 26.6 0.1 28 225-263 29-56 (60)
35 3efo_B SEC24 related gene fami 21.3 29 0.001 36.5 1.2 35 224-258 96-130 (770)
36 2g2k_A EIF-5, eukaryotic trans 20.1 17 0.0006 32.1 -0.6 33 227-259 97-130 (170)
No 1
>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A
Probab=99.59 E-value=7.8e-16 Score=110.80 Aligned_cols=39 Identities=38% Similarity=0.858 Sum_probs=35.4
Q ss_pred CCCccccCCCCCCCCCCCCCCCCCcccchhhhhhhhcCCC
Q 019919 224 DSVRKCLHCASEKTPQWRTGPMGPKTLCNACGVRYKSGRL 263 (334)
Q Consensus 224 g~~~~C~~C~~~~TP~WR~GP~G~ktLCNACGlryk~grl 263 (334)
.+.+.|.||++++||+||+||.|+ +|||||||+|++++.
T Consensus 2 ~~~~~C~~C~tt~Tp~WR~gp~G~-~LCNaCGl~~k~~~~ 40 (46)
T 1gnf_A 2 SEARECVNCGATATPLWRRDRTGH-YLCNACGLYHKMNGQ 40 (46)
T ss_dssp CCSCCCTTTCCCCCSSCBCCTTCC-CBCSHHHHHHHHTCS
T ss_pred CCCCCCCCcCCCCCCcCccCCCCC-ccchHHHHHHHHcCC
Confidence 356889999999999999999996 999999999998664
No 2
>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I*
Probab=99.58 E-value=5.4e-16 Score=110.19 Aligned_cols=36 Identities=42% Similarity=0.947 Sum_probs=33.5
Q ss_pred ccccCCCCCCCCCCCCCCCCCcccchhhhhhhhcCCC
Q 019919 227 RKCLHCASEKTPQWRTGPMGPKTLCNACGVRYKSGRL 263 (334)
Q Consensus 227 ~~C~~C~~~~TP~WR~GP~G~ktLCNACGlryk~grl 263 (334)
+.|.+|++++||+||+||.|+ +|||||||+|++++.
T Consensus 2 ~~C~~C~tt~Tp~WR~gp~G~-~LCNaCGl~~k~~~~ 37 (43)
T 2vut_I 2 TTCTNCFTQTTPLWRRNPEGQ-PLCNACGLFLKLHGV 37 (43)
T ss_dssp CCCSSSCCCCCSCCEECTTSC-EECHHHHHHHHHHSS
T ss_pred CcCCccCCCCCCccccCCCCC-cccHHHHHHHHHhCC
Confidence 579999999999999999997 999999999998664
No 3
>3dfx_A Trans-acting T-cell-specific transcription factor GATA-3; activator, DNA-binding, metal-binding, nucleus; HET: DNA; 2.70A {Mus musculus} PDB: 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A*
Probab=99.56 E-value=9.1e-16 Score=116.95 Aligned_cols=50 Identities=30% Similarity=0.624 Sum_probs=41.9
Q ss_pred CCccccCCCCCCCCCCCCCCCCCcccchhhhhhhhcCCCCCCCCCCCCCccccc
Q 019919 225 SVRKCLHCASEKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFVSA 278 (334)
Q Consensus 225 ~~~~C~~C~~~~TP~WR~GP~G~ktLCNACGlryk~grllp~~rPa~spt~~~~ 278 (334)
....|.||+++.||+||+||.|+ +|||||||+|++++. +||.......++
T Consensus 6 ~~~~C~~C~tt~Tp~WR~gp~G~-~LCNACGl~~~~~~~---~RP~~~~~~~i~ 55 (63)
T 3dfx_A 6 AGTSCANCQTTTTTLWRRNANGD-PVCNACGLYYKLHNI---NRPLTMKKEGIQ 55 (63)
T ss_dssp TTCCCTTTCCSCCSSCCCCTTSC-CCCHHHHHHHHHHSS---CCCGGGCCSSCC
T ss_pred CCCcCCCcCCCCCCccCCCCCCC-chhhHHHHHHHHcCC---CCCcCcCCCccc
Confidence 45679999999999999999997 999999999998764 577766655543
No 4
>4gat_A Nitrogen regulatory protein AREA; DNA binding protein, transcription factor, zinc binding domain, complex (transcription regulation/DNA); HET: DNA; NMR {Emericella nidulans} SCOP: g.39.1.1 PDB: 5gat_A* 6gat_A* 7gat_A*
Probab=99.55 E-value=1e-15 Score=117.56 Aligned_cols=52 Identities=38% Similarity=0.731 Sum_probs=43.7
Q ss_pred CCCccccCCCCCCCCCCCCCCCCCcccchhhhhhhhcCCCCCCCCCCCCCcccccc
Q 019919 224 DSVRKCLHCASEKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFVSAK 279 (334)
Q Consensus 224 g~~~~C~~C~~~~TP~WR~GP~G~ktLCNACGlryk~grllp~~rPa~spt~~~~~ 279 (334)
+....|.||++++||+||+||.|. +|||||||+|++.+. .||....+.++++
T Consensus 7 ~~~~~C~~C~t~~Tp~WR~gp~G~-~LCNaCGl~~~~~~~---~RP~~~k~~~ik~ 58 (66)
T 4gat_A 7 NGPTTCTNCFTQTTPLWRRNPEGQ-PLCNACGLFLKLHGV---VRPLSLKTDVIKK 58 (66)
T ss_dssp SSSCCCTTTCCCCCSSCEEETTTE-EECHHHHHHHHHHCS---CCCGGGCCSCCCC
T ss_pred CCCCCCCCCCCCCCCcCCcCCCCC-CccHHHHHHHHHcCC---CCchhhccccccc
Confidence 467899999999999999999996 999999999997553 4777777666543
No 5
>2kae_A GATA-type transcription factor; zinc finger, GATA-type, DNA; NMR {Caenorhabditis elegans}
Probab=99.45 E-value=1.3e-14 Score=112.84 Aligned_cols=44 Identities=25% Similarity=0.491 Sum_probs=34.6
Q ss_pred CCCccccCCCCCCCCCCCCCCCCCcccchhhhhhhhcCCCCCCCCCC
Q 019919 224 DSVRKCLHCASEKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPA 270 (334)
Q Consensus 224 g~~~~C~~C~~~~TP~WR~GP~G~ktLCNACGlryk~grllp~~rPa 270 (334)
+....|+||++++||+||+||.+..+|||||||+|++.+ ..||.
T Consensus 6 ~~~~~C~nC~tt~Tp~WRrg~~~~g~LCNACGl~~~~~~---~~RP~ 49 (71)
T 2kae_A 6 KKSFQCSNCSVTETIRWRNIRSKEGIQCNACFIYQRKYN---KTRPV 49 (71)
T ss_dssp --CCCCSSSCCSCCSSCCCCSSSSCCCSSHHHHHHHHHH---SCCCT
T ss_pred CCCCcCCccCCCCCCccccCCCCCCccchHHHHHHHHhC---CCCCc
Confidence 467899999999999999965555599999999999754 34553
No 6
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=99.37 E-value=2.7e-13 Score=113.33 Aligned_cols=50 Identities=30% Similarity=0.627 Sum_probs=42.1
Q ss_pred CCccccCCCCCCCCCCCCCCCCCcccchhhhhhhhcCCCCCCCCCCCCCccccc
Q 019919 225 SVRKCLHCASEKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFVSA 278 (334)
Q Consensus 225 ~~~~C~~C~~~~TP~WR~GP~G~ktLCNACGlryk~grllp~~rPa~spt~~~~ 278 (334)
....|.||+++.||+||+||.| ++|||||||+|++++.. ||....+..+.
T Consensus 58 ~~~~C~~C~t~~tp~WRr~~~g-~~lCNaCgl~~~~~~~~---rp~~~~~~~i~ 107 (115)
T 4hc9_A 58 AGTSCANCQTTTTTLWRRNANG-DPVCNACGLYYKLHNIN---RPLTMKKEGIQ 107 (115)
T ss_dssp TTCCCTTTCCSCCSSCEECTTS-CEECHHHHHHHHHHSSC---CCGGGCCSSCC
T ss_pred ccccCCCcCCCCcceeEECCCC-CCcchHHHHHHHHhCCC---CCccccccchh
Confidence 4578999999999999999999 89999999999986643 77766655543
No 7
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=99.10 E-value=2e-11 Score=102.08 Aligned_cols=37 Identities=41% Similarity=0.895 Sum_probs=32.1
Q ss_pred CCCccccCCCCCCCCCCCCCCCCCcccchhhhhhhhcC
Q 019919 224 DSVRKCLHCASEKTPQWRTGPMGPKTLCNACGVRYKSG 261 (334)
Q Consensus 224 g~~~~C~~C~~~~TP~WR~GP~G~ktLCNACGlryk~g 261 (334)
...+.|.||+++.||+||+||.| .+|||||||+|+..
T Consensus 3 ~~~~~C~~Cg~~~Tp~WRr~~~g-~~lCnaCgl~~Kl~ 39 (115)
T 4hc9_A 3 HMGRECVNCGATSTPLWRRDGTG-HYLCNACGLYHKMN 39 (115)
T ss_dssp ---CCCTTTCCSCCSSCEECTTS-CEECHHHHHHHHHH
T ss_pred CCCCCCCCCCCccCCcceECCCC-CCcCcchhhhhhhc
Confidence 45789999999999999999999 79999999999853
No 8
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=71.51 E-value=1.2 Score=30.94 Aligned_cols=41 Identities=24% Similarity=0.537 Sum_probs=27.4
Q ss_pred CccccCCCCCCCCCCCCCCCCCcccchhhhhhhhcCCCC--CCCCC
Q 019919 226 VRKCLHCASEKTPQWRTGPMGPKTLCNACGVRYKSGRLV--PEYRP 269 (334)
Q Consensus 226 ~~~C~~C~~~~TP~WR~GP~G~ktLCNACGlryk~grll--p~~rP 269 (334)
...|.+|+.. +.- -.+......|..||+-|....+- |+||.
T Consensus 5 ~~~CP~C~~~--~l~-~d~~~gelvC~~CG~v~~e~~id~~~ewr~ 47 (50)
T 1pft_A 5 QKVCPACESA--ELI-YDPERGEIVCAKCGYVIEENIIDMGPEWRA 47 (50)
T ss_dssp CCSCTTTSCC--CEE-EETTTTEEEESSSCCBCCCCCCCCCSSSSC
T ss_pred cEeCcCCCCc--ceE-EcCCCCeEECcccCCcccccccccCCcccc
Confidence 3569999773 222 23333379999999999865543 77775
No 9
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=66.39 E-value=3 Score=30.44 Aligned_cols=42 Identities=17% Similarity=0.301 Sum_probs=29.1
Q ss_pred CccccCCCCCCCCCCCCCCCCCcccchhhhhhhhcCCC--CCCCCCC
Q 019919 226 VRKCLHCASEKTPQWRTGPMGPKTLCNACGVRYKSGRL--VPEYRPA 270 (334)
Q Consensus 226 ~~~C~~C~~~~TP~WR~GP~G~ktLCNACGlryk~grl--lp~~rPa 270 (334)
...|..|+... .-..-..| .+.|..||+-+....+ -||||.-
T Consensus 11 ~~~Cp~C~~~~--lv~D~~~g-e~vC~~CGlVl~e~~iD~gpEWR~F 54 (58)
T 1dl6_A 11 RVTCPNHPDAI--LVEDYRAG-DMICPECGLVVGDRVIDVGSEWRTF 54 (58)
T ss_dssp CCSBTTBSSSC--CEECSSSC-CEECTTTCCEECCSCCCCCCSCCCS
T ss_pred cccCcCCCCCc--eeEeCCCC-eEEeCCCCCEEeccccccCCccccc
Confidence 34799998754 33333445 7999999999986543 4788753
No 10
>1qyp_A RNA polymerase II; transcription, RPB9, Zn ribbon, hyperthermophilic, extremophIle; NMR {Thermococcus celer} SCOP: g.41.3.1
Probab=61.45 E-value=1.8 Score=30.95 Aligned_cols=35 Identities=26% Similarity=0.561 Sum_probs=26.5
Q ss_pred CccccCCCCCC----CCCCCCCCCCCc--ccchhhhhhhhc
Q 019919 226 VRKCLHCASEK----TPQWRTGPMGPK--TLCNACGVRYKS 260 (334)
Q Consensus 226 ~~~C~~C~~~~----TP~WR~GP~G~k--tLCNACGlryk~ 260 (334)
...|.+|+-.. +-|||...++.. ..|..||-+|+.
T Consensus 15 ~~~Cp~Cg~~~~~~~q~Q~rsadep~T~fy~C~~Cg~~w~~ 55 (57)
T 1qyp_A 15 KITCPKCGNDTAYWWEMQTRAGDEPSTIFYKCTKCGHTWRS 55 (57)
T ss_dssp ECCCTTTCCSEEEEEEECCSSSSCSSEEEEEESSSCCEEEC
T ss_pred EeECCCCCCCEEEEEEeecccCCCCCcEEEEcCCCCCEecc
Confidence 46799999865 458888766643 589999998863
No 11
>2yrk_A Zinc finger homeobox protein 4; structure genomics, ZF-C2H2 domain, ZFH-4, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.37.1.4
Probab=58.97 E-value=2.9 Score=31.15 Aligned_cols=19 Identities=42% Similarity=0.920 Sum_probs=16.9
Q ss_pred CCCCCCCcccchhhhhhhh
Q 019919 241 RTGPMGPKTLCNACGVRYK 259 (334)
Q Consensus 241 R~GP~G~ktLCNACGlryk 259 (334)
..+|.||++-|.-||+.|-
T Consensus 6 ~~~~~~P~~eC~lC~vkYs 24 (55)
T 2yrk_A 6 SGGTDGTKPECTLCGVKYS 24 (55)
T ss_dssp CCCCCCCCSCCTTTTCCCC
T ss_pred CCCCCCCCccccccCcccc
Confidence 3588999999999999997
No 12
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=53.27 E-value=8.1 Score=36.47 Aligned_cols=42 Identities=21% Similarity=0.385 Sum_probs=25.7
Q ss_pred CccccCCCCCCC-CCCCCCCCCCcccchhhhhhhhcCCCC--CCCCC
Q 019919 226 VRKCLHCASEKT-PQWRTGPMGPKTLCNACGVRYKSGRLV--PEYRP 269 (334)
Q Consensus 226 ~~~C~~C~~~~T-P~WR~GP~G~ktLCNACGlryk~grll--p~~rP 269 (334)
...|.+|+...+ -.. +--.| .+.|..||+=+...-+. ||||-
T Consensus 21 ~~~Cp~Cg~~~~~iv~-D~~~G-~~vC~~CG~Vl~e~~id~~~EwR~ 65 (345)
T 3k7a_M 21 VLTCPECKVYPPKIVE-RFSEG-DVVCALCGLVLSDKLVDTRSEWRT 65 (345)
T ss_dssp CCCCSTTCCSCCCCCC-CSSSC-SCCCSSSCCCCCCCCCCTTCCCCC
T ss_pred CCcCcCCCCCCCceEE-ECCCC-CEecCCCCeEcccccccCCccccc
Confidence 456888887632 233 22345 68888888877654433 66654
No 13
>3cw2_K Translation initiation factor 2 subunit beta; AIF2, intact AIF2, initiation factor 2 alpha subunit, initiation factor 2 beta subunit; 2.80A {Sulfolobus solfataricus} PDB: 2nxu_A 2qmu_C* 3v11_C*
Probab=45.27 E-value=10 Score=32.32 Aligned_cols=31 Identities=26% Similarity=0.401 Sum_probs=21.3
Q ss_pred CccccCCCCCCCCCCCCCCCCCcccchhhhhh
Q 019919 226 VRKCLHCASEKTPQWRTGPMGPKTLCNACGVR 257 (334)
Q Consensus 226 ~~~C~~C~~~~TP~WR~GP~G~ktLCNACGlr 257 (334)
-..|..|+...|-.=+.+-. --.-|+|||-.
T Consensus 103 yVlC~~C~sPdT~l~k~~r~-~~l~C~ACGa~ 133 (139)
T 3cw2_K 103 YVECSTCKSLDTILKKEKKS-WYIVCLACGAQ 133 (139)
T ss_dssp CSSCCSSSSSCCCSCSSCST-TTSSCCC----
T ss_pred eeECCCCCCcCcEEEEeCCe-EEEEecCCCCC
Confidence 47899999999999886522 24689999964
No 14
>2d74_B Translation initiation factor 2 beta subunit; protein complex; 2.80A {Pyrococcus furiosus} PDB: 2dcu_B*
Probab=43.70 E-value=11 Score=32.70 Aligned_cols=31 Identities=26% Similarity=0.458 Sum_probs=24.2
Q ss_pred ccccCCCCCCCCCCCCCCCCCcccchhhhhhh
Q 019919 227 RKCLHCASEKTPQWRTGPMGPKTLCNACGVRY 258 (334)
Q Consensus 227 ~~C~~C~~~~TP~WR~GP~G~ktLCNACGlry 258 (334)
..|..|+...|-.=+.+-. --.-|+|||-..
T Consensus 105 VlC~~C~sPdT~L~k~~r~-~~l~C~ACGa~~ 135 (148)
T 2d74_B 105 VICPVCGSPDTKIIKRDRF-HFLKCEACGAET 135 (148)
T ss_dssp SSCSSSCCTTCCCCBSSSS-BCCCCSSSCCCC
T ss_pred EECCCCCCcCcEEEEeCCE-EEEEecCCCCCc
Confidence 6899999999998886522 246899999654
No 15
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=38.88 E-value=11 Score=33.89 Aligned_cols=30 Identities=23% Similarity=0.720 Sum_probs=25.6
Q ss_pred CCccccCCCCCCCCCCCCCCCCCcccchhhhh
Q 019919 225 SVRKCLHCASEKTPQWRTGPMGPKTLCNACGV 256 (334)
Q Consensus 225 ~~~~C~~C~~~~TP~WR~GP~G~ktLCNACGl 256 (334)
....|..|+... |+|-.-..| ..+|-.|--
T Consensus 41 ~n~~c~dc~~~~-p~w~s~~~g-~~~c~~cs~ 70 (301)
T 2b0o_E 41 GNSQCCDCGAAD-PTWLSTNLG-VLTCIQCSG 70 (301)
T ss_dssp TTTBCTTTCCBS-CCEEETTTT-EEECHHHHH
T ss_pred CCCcCCCCCCCC-CCeEEeecC-eEEcHHHHH
Confidence 468999999965 999999999 799999943
No 16
>3po3_S Transcription elongation factor S-II; RNA polymerase II, mRNA, transcription, arrest, BACKTRACKING cleavage, transferase-DNA-RNA complex; HET: DNA BRU EPE PGE; 3.30A {Saccharomyces cerevisiae} PDB: 1y1v_S 1y1y_S 3gtm_S* 1enw_A
Probab=37.37 E-value=11 Score=32.92 Aligned_cols=34 Identities=29% Similarity=0.561 Sum_probs=23.8
Q ss_pred CccccCCCCCCC---CCC-CCCCCCCc--ccchhhhhhhh
Q 019919 226 VRKCLHCASEKT---PQW-RTGPMGPK--TLCNACGVRYK 259 (334)
Q Consensus 226 ~~~C~~C~~~~T---P~W-R~GP~G~k--tLCNACGlryk 259 (334)
...|..|+-... ..+ |.+.+|.. ..|..||-+|+
T Consensus 137 ~~~Cp~C~~~~a~~~q~Q~rsaDE~mt~f~~C~~C~~~w~ 176 (178)
T 3po3_S 137 RFTCGKCKEKKVSYYQLQTRSAAAPLTTFCTCEACGNRWK 176 (178)
T ss_dssp SSCCSSSCCSCEECCCCCCSCTTSCCCCCEEETTTCCEEC
T ss_pred CcCCCCCCCCceEEEEeecccCCCCCcEEEEcCCCCCeec
Confidence 457999998763 222 66655533 48999999986
No 17
>1pqv_S STP-alpha, transcription elongation factor S-II, DNA; mRNA cleavage, proofreading, BACKTRACKING, gene expression, multiprotein complex; 3.80A {Saccharomyces cerevisiae} SCOP: i.8.1.1 PDB: 1eo0_A
Probab=36.21 E-value=8.9 Score=36.16 Aligned_cols=34 Identities=29% Similarity=0.610 Sum_probs=25.5
Q ss_pred CccccCCCCCCCCCC----CCCCCCCc--ccchhhhhhhh
Q 019919 226 VRKCLHCASEKTPQW----RTGPMGPK--TLCNACGVRYK 259 (334)
Q Consensus 226 ~~~C~~C~~~~TP~W----R~GP~G~k--tLCNACGlryk 259 (334)
...|..|+-.+.-.| |...+|-. ..|..||-+|+
T Consensus 268 ~~~C~~C~~~~~~~~q~Q~rsaDe~~t~f~~C~~Cg~~w~ 307 (309)
T 1pqv_S 268 RFTCGKCKEKKVSYYQLQTRSADEPLTTFCTCEACGNRWK 307 (309)
T ss_pred cccCCCCCCCeeEEEEeecccCCCCCcEEEEeCCCCCcee
Confidence 457999998876444 66766643 48999999986
No 18
>1tfi_A Transcriptional elongation factor SII; transcription regulation; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=35.94 E-value=8.9 Score=27.31 Aligned_cols=35 Identities=26% Similarity=0.568 Sum_probs=25.3
Q ss_pred CCccccCCCCCCCCC----CCCCCCCCc--ccchhhhhhhh
Q 019919 225 SVRKCLHCASEKTPQ----WRTGPMGPK--TLCNACGVRYK 259 (334)
Q Consensus 225 ~~~~C~~C~~~~TP~----WR~GP~G~k--tLCNACGlryk 259 (334)
....|..|+-.+.-- =|...+|.. ..|..||-+|+
T Consensus 8 ~~~~Cp~Cg~~~a~f~q~Q~RsaDE~mT~Fy~C~~Cg~~w~ 48 (50)
T 1tfi_A 8 DLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRWK 48 (50)
T ss_dssp CCSCCSSSCSSCEEEEEECSSSSSSCCEEEEEESSSCCEEE
T ss_pred CccCCCCCCCCEEEEEEecCcCCCCCceEEEEcCCCCCeEE
Confidence 346799999877533 377777743 48999998886
No 19
>1nee_A EIF-2-beta, probable translation initiation factor 2 beta subunit; two domain protein, mixed alpha-beta structure; NMR {Methanothermobacterthermautotrophicus} SCOP: d.241.1.1 g.59.1.1
Probab=35.14 E-value=11 Score=32.20 Aligned_cols=30 Identities=30% Similarity=0.647 Sum_probs=23.4
Q ss_pred ccccCCCCCCCCCCCCCCCCCcccchhhhhh
Q 019919 227 RKCLHCASEKTPQWRTGPMGPKTLCNACGVR 257 (334)
Q Consensus 227 ~~C~~C~~~~TP~WR~GP~G~ktLCNACGlr 257 (334)
..|..|+...|-.=+.+-. --.-|+|||-.
T Consensus 103 VlC~~C~sPdT~l~k~~r~-~~l~C~ACGa~ 132 (138)
T 1nee_A 103 VICHECNRPDTRIIREGRI-SLLKCEACGAK 132 (138)
T ss_dssp HHHTCCSSCSSCCEEETTT-TEEECSTTSCC
T ss_pred EECCCCCCcCcEEEEcCCe-EEEEccCCCCC
Confidence 6899999999998876422 24689999964
No 20
>2iqj_A Stromal membrane-associated protein 1-like; zinc, structural genomics, structural genomics consortium, SGC, protein transport; 1.90A {Homo sapiens}
Probab=33.56 E-value=13 Score=31.39 Aligned_cols=34 Identities=24% Similarity=0.638 Sum_probs=27.8
Q ss_pred CCccccCCCCCCCCCCCCCCCCCcccchhhhhhhhc
Q 019919 225 SVRKCLHCASEKTPQWRTGPMGPKTLCNACGVRYKS 260 (334)
Q Consensus 225 ~~~~C~~C~~~~TP~WR~GP~G~ktLCNACGlryk~ 260 (334)
..+.|..|+... |.|=.=..| -.+|-.|.-..+.
T Consensus 26 ~N~~CaDCg~~~-P~WaS~n~G-vfiC~~CsgiHR~ 59 (134)
T 2iqj_A 26 DNKFCADCQSKG-PRWASWNIG-VFICIRCAGIHRN 59 (134)
T ss_dssp GGGBCTTTCCBS-CCEEETTTT-EEECHHHHHHHHH
T ss_pred CCCcCCcCcCCC-CCeEEecCC-EEEhHhhhHHHhc
Confidence 468999999875 999888888 7899999765554
No 21
>2owa_A Arfgap-like finger domain containing protein; zinc finger protein, cysteine-rich motif, GTPase activation; 2.00A {Cryptosporidium parvum iowa II}
Probab=33.08 E-value=13 Score=31.59 Aligned_cols=34 Identities=24% Similarity=0.678 Sum_probs=28.1
Q ss_pred CCccccCCCCCCCCCCCCCCCCCcccchhhhhhhhc
Q 019919 225 SVRKCLHCASEKTPQWRTGPMGPKTLCNACGVRYKS 260 (334)
Q Consensus 225 ~~~~C~~C~~~~TP~WR~GP~G~ktLCNACGlryk~ 260 (334)
..+.|..|+... |.|=.=..| -.||-.|.-.-+.
T Consensus 35 ~N~~CaDCga~~-P~WaS~n~G-vfiC~~CsgiHR~ 68 (138)
T 2owa_A 35 ENRTCFDCESRN-PTWLSLSFA-VFICLNCSSDHRK 68 (138)
T ss_dssp GGGBCTTTCCBS-CCEEETTTT-EEECHHHHHHHHT
T ss_pred CCCcCCCCcCCC-CCeEEecCC-EEEhHhhhHHHhC
Confidence 468999999865 999888888 7899999776664
No 22
>2crr_A Stromal membrane-associated protein SMAP1B; arfgap domain, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=31.70 E-value=16 Score=31.01 Aligned_cols=46 Identities=17% Similarity=0.520 Sum_probs=32.4
Q ss_pred CCccccCCCCCCCCCCCCCCCCCcccchhhhhhhhc-CCCCCCCCCCCC
Q 019919 225 SVRKCLHCASEKTPQWRTGPMGPKTLCNACGVRYKS-GRLVPEYRPAAS 272 (334)
Q Consensus 225 ~~~~C~~C~~~~TP~WR~GP~G~ktLCNACGlryk~-grllp~~rPa~s 272 (334)
..+.|..|+.. -|+|=.=..| -.||-.|.-..+. |.-+-..|....
T Consensus 28 ~N~~CaDCga~-~P~WaS~n~G-vfiC~~CsgiHR~LG~hiS~VkSl~l 74 (141)
T 2crr_A 28 DNKYCADCEAK-GPRWASWNIG-VFICIRCAGIHRNLGVHISRVKSVNL 74 (141)
T ss_dssp GGSSCSSSCCS-SCCSEETTTT-EECCHHHHHHHHHHCTTTCCCBCSSS
T ss_pred cCCcCCCCCCC-CCCeEEeccC-eEEhhhhhHhHhcCCCCCCeeeECCC
Confidence 46899999986 5999888888 7899999665554 543334444433
No 23
>2crw_A ARF GAP 3, ADP-ribosylation factor GTPase-activating protein 3; arfgap domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=29.20 E-value=23 Score=30.58 Aligned_cols=46 Identities=24% Similarity=0.561 Sum_probs=32.7
Q ss_pred CCccccCCCCCCCCCCCCCCCCCcccchhhhhhhhc-CCCCCCCCCCCC
Q 019919 225 SVRKCLHCASEKTPQWRTGPMGPKTLCNACGVRYKS-GRLVPEYRPAAS 272 (334)
Q Consensus 225 ~~~~C~~C~~~~TP~WR~GP~G~ktLCNACGlryk~-grllp~~rPa~s 272 (334)
..+.|..|+.. -|+|=.=..| -.+|-.|.-.-+. |.-+-..|....
T Consensus 28 ~N~~CaDCga~-~P~WaS~n~G-vfiC~~CsgiHR~LG~hiS~VrSl~L 74 (149)
T 2crw_A 28 TNKVCFDCGAK-NPSWASITYG-VFLCIDCSGSHRSLGVHLSFIRSTEL 74 (149)
T ss_dssp TTSBCSSSCCB-SCCCEETTTT-EECCHHHHHHHHHHCTTTCCEECSSS
T ss_pred CCCcCCCCcCC-CCCcEEeccC-EEEchhcchhhccCCCCCCeeecccc
Confidence 56899999975 6999888888 7899999765554 443334444443
No 24
>3dwd_A ADP-ribosylation factor GTPase-activating protein; GAP, structural genomics consorti ER-golgi transport, golgi apparatus, GTPase activation; 2.40A {Homo sapiens}
Probab=28.86 E-value=21 Score=30.99 Aligned_cols=34 Identities=26% Similarity=0.663 Sum_probs=27.9
Q ss_pred CCccccCCCCCCCCCCCCCCCCCcccchhhhhhhhc
Q 019919 225 SVRKCLHCASEKTPQWRTGPMGPKTLCNACGVRYKS 260 (334)
Q Consensus 225 ~~~~C~~C~~~~TP~WR~GP~G~ktLCNACGlryk~ 260 (334)
..+.|..|+... |.|=.=..| -.||-.|.-.-+.
T Consensus 37 ~N~~CaDCga~~-P~WaS~nlG-vfiC~~CSgiHR~ 70 (147)
T 3dwd_A 37 ENNVCFECGAFN-PQWVSVTYG-IWICLECSGRHRG 70 (147)
T ss_dssp TTTBCTTTCCBS-CCEEETTTT-EEECHHHHHHHHH
T ss_pred CCCccCCCCCCC-CCeEEeccc-EeEhHhhChHHhc
Confidence 468999999865 999888888 7899999765554
No 25
>1k81_A EIF-2-beta, probable translation initiation factor 2 beta subunit; zinc ribbon; NMR {Methanocaldococcus jannaschii} SCOP: g.59.1.1
Probab=28.62 E-value=5.9 Score=26.52 Aligned_cols=30 Identities=27% Similarity=0.522 Sum_probs=20.8
Q ss_pred cccCCCCCCCCCCCCCCCCCcccchhhhhhh
Q 019919 228 KCLHCASEKTPQWRTGPMGPKTLCNACGVRY 258 (334)
Q Consensus 228 ~C~~C~~~~TP~WR~GP~G~ktLCNACGlry 258 (334)
.|..|+...|-.=+.+-. --.-|+|||-+.
T Consensus 2 lC~~C~~peT~l~~~~~~-~~l~C~aCG~~~ 31 (36)
T 1k81_A 2 ICRECGKPDTKIIKEGRV-HLLKCMACGAIR 31 (36)
T ss_dssp CCSSSCSCEEEEEEETTE-EEEEEETTTEEE
T ss_pred CCcCCCCCCcEEEEeCCc-EEEEhhcCCCcc
Confidence 488999998887774311 124699999654
No 26
>2p57_A GTPase-activating protein ZNF289; zinc finger, GAP, structural genomics, structural genomics consortium, SGC, metal binding protein; 1.80A {Homo sapiens}
Probab=27.96 E-value=15 Score=31.66 Aligned_cols=43 Identities=26% Similarity=0.608 Sum_probs=31.6
Q ss_pred CCccccCCCCCCCCCCCCCCCCCcccchhhhhhhhc-CCCCCCCCC
Q 019919 225 SVRKCLHCASEKTPQWRTGPMGPKTLCNACGVRYKS-GRLVPEYRP 269 (334)
Q Consensus 225 ~~~~C~~C~~~~TP~WR~GP~G~ktLCNACGlryk~-grllp~~rP 269 (334)
..+.|..|+.. -|+|=.=..| -.+|-.|.-.-+. |.-+-..|.
T Consensus 36 ~N~~CaDCga~-~P~WaS~n~G-vfiC~~CsgiHR~LG~hIS~VrS 79 (144)
T 2p57_A 36 TNKACFDCGAK-NPSWASITYG-VFLCIDCSGVHRSLGVHLSFIRS 79 (144)
T ss_dssp GGGBCTTTCCB-SCCEEEGGGT-EEECHHHHHHHHHHCTTTCCEEE
T ss_pred CCCcCCCCcCC-CCCeEEeccC-EEEhhhchHHHcCCCCCCCeeee
Confidence 46899999986 4999888888 7899999776664 443433333
No 27
>2zjr_Z 50S ribosomal protein L32; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: g.41.8.5 PDB: 1j5a_M* 1jzy_M* 1jzz_M* 1k01_M* 1nkw_Z 1ond_Z* 1sm1_Z* 1yl3_5 2b66_5 2b9n_5 2b9p_5 2zjp_Y* 2zjq_Z 1jzx_M 3cf5_Y* 3dll_Y* 3pio_Z* 3pip_Z* 1nwy_Z* 1nwx_Z* ...
Probab=27.57 E-value=20 Score=26.57 Aligned_cols=29 Identities=34% Similarity=0.917 Sum_probs=20.6
Q ss_pred CCccccCCCCCCCCCCCCCCCCCcccchhhhhhhhcCCCC
Q 019919 225 SVRKCLHCASEKTPQWRTGPMGPKTLCNACGVRYKSGRLV 264 (334)
Q Consensus 225 ~~~~C~~C~~~~TP~WR~GP~G~ktLCNACGlryk~grll 264 (334)
....|.+||..+-| ..+|-.|| +| +|+.+
T Consensus 29 ~l~~c~~cG~~~~p---------H~vc~~CG-~Y-~gr~v 57 (60)
T 2zjr_Z 29 NLTECPQCHGKKLS---------HHICPNCG-YY-DGRQV 57 (60)
T ss_dssp CCEECTTTCCEECT---------TBCCTTTC-BS-SSBCS
T ss_pred CceECCCCCCEeCC---------ceEcCCCC-cC-CCEEe
Confidence 35679999987544 58999999 44 46643
No 28
>3cng_A Nudix hydrolase; structural genomics, APC7497, PSI-2, protei structure initiative; 2.00A {Nitrosomonas europaea atcc 19718}
Probab=26.53 E-value=22 Score=29.59 Aligned_cols=30 Identities=23% Similarity=0.602 Sum_probs=25.6
Q ss_pred CccccCCCCCCCCCCCCCCCCCcccchhhh
Q 019919 226 VRKCLHCASEKTPQWRTGPMGPKTLCNACG 255 (334)
Q Consensus 226 ~~~C~~C~~~~TP~WR~GP~G~ktLCNACG 255 (334)
.+-|..||..-+.....|..+....|-.||
T Consensus 3 ~~~C~~CG~~~~~~~~~G~~~~~~~~~~~~ 32 (189)
T 3cng_A 3 MKFCSQCGGEVILRIPEGDTLPRYICPKCH 32 (189)
T ss_dssp CCBCTTTCCBCEEECCTTCSSCEEEETTTT
T ss_pred cccCchhCCccccccccCCCCcceECCCCC
Confidence 568999999988777778777778999999
No 29
>1jh4_B PAIP1, polyadenylate-binding protein-interacting protein-1; all-helical domain, protein-peptide complex, RNA binding protein; NMR {Homo sapiens} PDB: 3ntw_B
Probab=25.14 E-value=21 Score=22.87 Aligned_cols=10 Identities=60% Similarity=1.198 Sum_probs=8.9
Q ss_pred Cccccccccc
Q 019919 3 TPEFYIGGYF 12 (334)
Q Consensus 3 ~~~~~~~~~~ 12 (334)
|||||.+||=
T Consensus 10 ApeF~Psgys 19 (26)
T 1jh4_B 10 APEFYPSGYS 19 (26)
T ss_dssp CSCCCCTTCC
T ss_pred CceeccCccc
Confidence 7999999986
No 30
>2olm_A Nucleoporin-like protein RIP; arfgap, GTPase-activating protein, REV-interacting protein, human immunodeficiency virus, AIDS, structural genomics; 1.48A {Homo sapiens} PDB: 2d9l_A
Probab=24.27 E-value=24 Score=29.93 Aligned_cols=34 Identities=24% Similarity=0.681 Sum_probs=27.6
Q ss_pred CCccccCCCCCCCCCCCCCCCCCcccchhhhhhhhc
Q 019919 225 SVRKCLHCASEKTPQWRTGPMGPKTLCNACGVRYKS 260 (334)
Q Consensus 225 ~~~~C~~C~~~~TP~WR~GP~G~ktLCNACGlryk~ 260 (334)
..+.|..|+.. -|.|=.=..| -.||-.|.-..+.
T Consensus 24 ~N~~CaDCg~~-~P~WaS~n~G-vfiC~~CsgiHR~ 57 (140)
T 2olm_A 24 HNRKCFDCDQR-GPTYVNMTVG-SFVCTSCSGSLRG 57 (140)
T ss_dssp GGGSCTTTCSS-CCCEEETTTT-EEECHHHHHHHTT
T ss_pred CCCcCCCCCCC-CCCceeeccC-EEEchhccchhcc
Confidence 46899999985 6999888888 7899999765554
No 31
>2yrc_A Protein transport protein SEC23A; zinc binding, copii, coat protein complex-II, endoplasmic reticulum, golgi, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yrd_A
Probab=23.69 E-value=22 Score=26.12 Aligned_cols=41 Identities=22% Similarity=0.381 Sum_probs=33.5
Q ss_pred CCccccC--CCCCCCCCCCCCCCCCcccchhhhhhhhcCCCCCCCC
Q 019919 225 SVRKCLH--CASEKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYR 268 (334)
Q Consensus 225 ~~~~C~~--C~~~~TP~WR~GP~G~ktLCNACGlryk~grllp~~r 268 (334)
.+.+|.. |++---|.++-...|.+-.||-|+.+-. +.++|.
T Consensus 8 ~pvRC~r~~CraylNP~~~~~~~~~~W~C~~C~~~N~---~P~~Y~ 50 (59)
T 2yrc_A 8 EPVLCSRTTCRAVLNPLCQVDYRAKLWACNFCYQRNQ---FPPSYA 50 (59)
T ss_dssp CCCBCSCTTTCCBCCTTSEEEGGGTEEECSSSCCEEE---CCSCCS
T ss_pred CCcccCCCCCCeEECCceEEECCCCEEEcccCCCcCC---CCHHHh
Confidence 5789998 9999999999888888899999997654 445553
No 32
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=23.66 E-value=29 Score=32.64 Aligned_cols=29 Identities=31% Similarity=0.854 Sum_probs=25.0
Q ss_pred CCccccCCCCCCCCCCCCCCCCCcccchhhh
Q 019919 225 SVRKCLHCASEKTPQWRTGPMGPKTLCNACG 255 (334)
Q Consensus 225 ~~~~C~~C~~~~TP~WR~GP~G~ktLCNACG 255 (334)
..+.|..|+.. -|.|=.=..| -.||-.|.
T Consensus 44 ~n~~c~dc~~~-~p~w~s~~~g-~~~c~~c~ 72 (368)
T 3jue_A 44 GNAQCCDCREP-APEWASINLG-VTLCIQCS 72 (368)
T ss_dssp TTTBCTTTCCB-SCCEEETTTT-EEECHHHH
T ss_pred CcCcCCCCCCC-CCCeEEecCC-eEEcHhHH
Confidence 57899999985 6999888888 79999995
No 33
>2bsj_A Chaperone protein SYCT; type III secretion, effector, YOPT; 1.83A {Yersinia enterocolitica} PDB: 2bho_A 2bsh_A 2bsi_A
Probab=22.73 E-value=16 Score=30.95 Aligned_cols=16 Identities=38% Similarity=0.951 Sum_probs=13.0
Q ss_pred cccccch-hhhhhhhcc
Q 019919 114 DDLAELE-WLSNFVEDS 129 (334)
Q Consensus 114 dd~aeLE-WlS~fveDS 129 (334)
=|||||| ||-+|++|=
T Consensus 95 ldvaelqAWlErFIdDi 111 (133)
T 2bsj_A 95 LDIDEMQAWLERFIDDI 111 (133)
T ss_dssp CCHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHH
Confidence 3678886 999999984
No 34
>3v2d_5 50S ribosomal protein L32; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_4 2hgj_4 2hgu_4 2j03_5 2jl6_5 2jl8_5 2v47_5 2v49_5 2wdi_5 2wdj_5 2wdl_5 2wdn_5 2wh2_5 2wh4_5 2wrj_5 2wrl_5 2wro_5 2wrr_5 2x9s_5 2x9u_5 ...
Probab=22.04 E-value=20 Score=26.57 Aligned_cols=28 Identities=39% Similarity=0.949 Sum_probs=19.8
Q ss_pred CCccccCCCCCCCCCCCCCCCCCcccchhhhhhhhcCCC
Q 019919 225 SVRKCLHCASEKTPQWRTGPMGPKTLCNACGVRYKSGRL 263 (334)
Q Consensus 225 ~~~~C~~C~~~~TP~WR~GP~G~ktLCNACGlryk~grl 263 (334)
....|.+||..+-| ..+|-.|| +|+ |+.
T Consensus 29 ~l~~c~~cGe~~~~---------H~vc~~CG-~Y~-gr~ 56 (60)
T 3v2d_5 29 TLVPCPECKAMKPP---------HTVCPECG-YYA-GRK 56 (60)
T ss_dssp CCEECTTTCCEECT---------TSCCTTTC-EET-TEE
T ss_pred ceeECCCCCCeecc---------eEEcCCCC-cCC-CEE
Confidence 35679999986654 57899999 444 543
No 35
>3efo_B SEC24 related gene family, member D; copii, coat protein, transport signal, disease mutation, endoplasmic reticulum, ER-golgi transport, golgi apparatus, membrane; 2.70A {Homo sapiens} PDB: 3eg9_B
Probab=21.34 E-value=29 Score=36.53 Aligned_cols=35 Identities=17% Similarity=0.328 Sum_probs=29.9
Q ss_pred CCCccccCCCCCCCCCCCCCCCCCcccchhhhhhh
Q 019919 224 DSVRKCLHCASEKTPQWRTGPMGPKTLCNACGVRY 258 (334)
Q Consensus 224 g~~~~C~~C~~~~TP~WR~GP~G~ktLCNACGlry 258 (334)
..+.||..|++---|-.+-...|.+-.||-|+.+-
T Consensus 96 ~~pvRC~rCrayiNPf~~f~~~g~~w~Cn~C~~~N 130 (770)
T 3efo_B 96 SGPVRCNRCKAYMCPFMQFIEGGRRYQCGFCNCVN 130 (770)
T ss_dssp TCSCBCTTTCCBSCTTCEEEGGGTEEECTTTCCEE
T ss_pred CCCCccCCCCCCcCCceEEecCCCEEEeccccccC
Confidence 35789999999999988877788889999998753
No 36
>2g2k_A EIF-5, eukaryotic translation initiation factor 5; EIF125 fold; NMR {Homo sapiens}
Probab=20.14 E-value=17 Score=32.08 Aligned_cols=33 Identities=24% Similarity=0.381 Sum_probs=23.9
Q ss_pred ccccCCCCCCCCCCCCCCCC-Ccccchhhhhhhh
Q 019919 227 RKCLHCASEKTPQWRTGPMG-PKTLCNACGVRYK 259 (334)
Q Consensus 227 ~~C~~C~~~~TP~WR~GP~G-~ktLCNACGlryk 259 (334)
..|..|+...|-.=+..-.+ --.-|+|||-+.-
T Consensus 97 VlC~~C~sPdT~L~k~~~~r~~~l~C~ACGa~~~ 130 (170)
T 2g2k_A 97 VLCPECENPETDLHVNPKKQTIGNSCKACGYRGM 130 (170)
T ss_dssp HSCTTTSSSCEEEEEETTTTEEEEEETTTCCCCC
T ss_pred EECCCCCCCccEEEEecCCCEEEEEccccCCccc
Confidence 67999999999888732111 1357999997654
Done!