BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019921
(334 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3A9U|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate--Coa Ligase
pdb|3A9V|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate--Coa Ligase
pdb|3NI2|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate:coa Ligase
Length = 536
Score = 76.3 bits (186), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 72/266 (27%), Positives = 101/266 (37%), Gaps = 18/266 (6%)
Query: 4 LMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKIL 63
L VGA + +PKFE S L +E++ V+ VP +M +A + K S++ I
Sbjct: 246 LRVGAPILIMPKFEIGSLLGLIEKYKVSIAPVVPPVMMSIAKSPDLDK--HDLSSLRMIK 303
Query: 64 NGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLY--DPTLETPGQLPQAFGN 121
+GG L EL FP+A+L YGMTE L + +P PG N
Sbjct: 304 SGGAPLGKELEDTVRAKFPQARLGQGYGMTEAGPVLAMCLAFAKEPFDIKPGACGTVVRN 363
Query: 122 VTPNSVHQPQGVCVGKPAPHVELKVCSDGSSHVGRILTRGAHVMLRYWDQFLAKPSVSTG 181
V G + + P G I RG +M Y + A
Sbjct: 364 AEMKIVDPETGASLPRNQP--------------GEICIRGDQIMKGYLNDPEATSRTIDK 409
Query: 182 EVWLXXXXXXXXXXXXNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPXXXXXXXXXXAN 241
E WL +++V R IK G V P E+EA+L+ HP +
Sbjct: 410 EGWLHTGDIGYIDDDDELFIVDRLKELIKYKGFQVAPAELEALLIAHPEISDAAVVGLKD 469
Query: 242 ARLTEMVVACVRLRESWQWSESNCDQ 267
E+ VA V E Q +E Q
Sbjct: 470 EDAGEVPVAFVVKSEKSQATEDEIKQ 495
>pdb|2QVZ|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303A MUTATION,
BOUND TO 3- Chlorobenzoate
pdb|2QW0|X Chain X, 4-chlorobenzoyl-coa Ligase/synthetase, I303a Mutation,
Bound To 3,4 Dichlorobenzoate
Length = 504
Score = 71.2 bits (173), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 81/334 (24%), Positives = 127/334 (38%), Gaps = 54/334 (16%)
Query: 1 MAMLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVK 60
+A L + +V + +F AL+ V+Q VTSL P + LA + DS++
Sbjct: 216 VAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLR 275
Query: 61 KILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPG-----QL 115
+ G +P +++ P K ++AYG TE +SL T PG ++
Sbjct: 276 HVTFAGATMPDAVLETVHQHLPGEK-VNAYGTTEAMNSLYMRQPKTGTEMAPGFFSEVRI 334
Query: 116 PQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDGSSHVGRILTRGAHVMLRYWDQFLAK 175
+ G V + +G EL V + S+ VG +L +
Sbjct: 335 VRIGGGVDEIVANGEEG----------ELIVAASDSAFVG----------------YLNQ 368
Query: 176 PSVSTGEV---WLXXXXXXXXXXXXNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPXXX 232
P + ++ W V ++GR + I SGGEN++P E+E VL P
Sbjct: 369 PQATAEKLQDGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVT 428
Query: 233 XXXXXXXANARLTEMVVACVRLRESWQWSESNCDQXXXXXXXXXXXXXXRQHCREKNLTG 292
A+ R + V ACV R S D CR L
Sbjct: 429 EVVVIGLADQRWGQSVTACVVPRLGETLSADALD----------------TFCRSSELAD 472
Query: 293 FKAP-RLFVLWRKPFPLTSTGKIRRDEVRREVMS 325
FK P R F+L P + K+ R ++ ++V S
Sbjct: 473 FKRPKRYFIL--DQLPKNALNKVLRRQLVQQVSS 504
>pdb|3CW8|X Chain X, 4-chlorobenzoyl-coa Ligase/synthetase, Bound To
4cba-adenylate
Length = 504
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 81/334 (24%), Positives = 126/334 (37%), Gaps = 54/334 (16%)
Query: 1 MAMLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVK 60
+A L + +V I +F AL+ V+Q VTSL P + LA + DS++
Sbjct: 216 VAALALDGTYVVIEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLR 275
Query: 61 KILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPG-----QL 115
+ G +P +++ P K ++ YG TE +SL T PG ++
Sbjct: 276 HVTFAGATMPDAVLETVHQHLPGEK-VNIYGTTEAMNSLYMRQPKTGTEMAPGFFSEVRI 334
Query: 116 PQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDGSSHVGRILTRGAHVMLRYWDQFLAK 175
+ G V + +G EL V + S+ VG +L +
Sbjct: 335 VRIGGGVDEIVANGEEG----------ELIVAASDSAFVG----------------YLNQ 368
Query: 176 PSVSTGEV---WLXXXXXXXXXXXXNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPXXX 232
P + ++ W V ++GR + I SGGEN++P E+E VL P
Sbjct: 369 PEATAEKLQDGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVT 428
Query: 233 XXXXXXXANARLTEMVVACVRLRESWQWSESNCDQXXXXXXXXXXXXXXRQHCREKNLTG 292
A+ R + V ACV R S D CR L
Sbjct: 429 EVVVIGLADQRWGQSVTACVVPRLGETLSADALD----------------TFCRSSELAD 472
Query: 293 FKAP-RLFVLWRKPFPLTSTGKIRRDEVRREVMS 325
FK P R F+L P + K+ R ++ ++V S
Sbjct: 473 FKRPKRYFIL--DQLPKNALNKVLRRQLVQQVSS 504
>pdb|2QVX|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATION,
BOUND TO 3- Chlorobenzoate
pdb|2QVY|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATION,
BOUND TO 3,4- Dichlorobenzoate
Length = 504
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 80/334 (23%), Positives = 127/334 (38%), Gaps = 54/334 (16%)
Query: 1 MAMLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVK 60
+A L + +V + +F AL+ V+Q VTSL P + LA + DS++
Sbjct: 216 VAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLR 275
Query: 61 KILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPG-----QL 115
+ G +P +++ P K ++ YG TE +SL T PG ++
Sbjct: 276 HVTFAGATMPDAVLETVHQHLPGEK-VNGYGTTEAMNSLYMRQPKTGTEMAPGFFSEVRI 334
Query: 116 PQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDGSSHVGRILTRGAHVMLRYWDQFLAK 175
+ G V + +G EL V + S+ VG +L +
Sbjct: 335 VRIGGGVDEIVANGEEG----------ELIVAASDSAFVG----------------YLNQ 368
Query: 176 PSVSTGEV---WLXXXXXXXXXXXXNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPXXX 232
P + ++ W V ++GR + I SGGEN++P E+E VL P
Sbjct: 369 PQATAEKLQDGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVT 428
Query: 233 XXXXXXXANARLTEMVVACVRLRESWQWSESNCDQXXXXXXXXXXXXXXRQHCREKNLTG 292
A+ R + V ACV R S D CR L
Sbjct: 429 EVVVIGLADQRWGQSVTACVVPRLGETLSADALD----------------TFCRSSELAD 472
Query: 293 FKAP-RLFVLWRKPFPLTSTGKIRRDEVRREVMS 325
FK P R F+L + P + K+ R ++ ++V S
Sbjct: 473 FKRPKRYFILDQ--LPKNALNKVLRRQLVQQVSS 504
>pdb|1T5D|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE BOUND TO
4-Chlorobenzoate
pdb|3CW9|A Chain A, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE IN THE
THIOESTER-Forming Conformation, Bound To
4-Chlorophenacyl-Coa
pdb|3CW9|B Chain B, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE IN THE
THIOESTER-Forming Conformation, Bound To
4-Chlorophenacyl-Coa
Length = 504
Score = 68.9 bits (167), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 80/334 (23%), Positives = 126/334 (37%), Gaps = 54/334 (16%)
Query: 1 MAMLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVK 60
+A L + +V + +F AL+ V+Q VTSL P + LA + DS++
Sbjct: 216 VAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLR 275
Query: 61 KILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPG-----QL 115
+ G +P +++ P K ++ YG TE +SL T PG ++
Sbjct: 276 HVTFAGATMPDAVLETVHQHLPGEK-VNIYGTTEAMNSLYMRQPKTGTEMAPGFFSEVRI 334
Query: 116 PQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDGSSHVGRILTRGAHVMLRYWDQFLAK 175
+ G V + +G EL V + S+ VG +L +
Sbjct: 335 VRIGGGVDEIVANGEEG----------ELIVAASDSAFVG----------------YLNQ 368
Query: 176 PSVSTGEV---WLXXXXXXXXXXXXNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPXXX 232
P + ++ W V ++GR + I SGGEN++P E+E VL P
Sbjct: 369 PQATAEKLQDGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVT 428
Query: 233 XXXXXXXANARLTEMVVACVRLRESWQWSESNCDQXXXXXXXXXXXXXXRQHCREKNLTG 292
A+ R + V ACV R S D CR L
Sbjct: 429 EVVVIGLADQRWGQSVTACVVPRLGETLSADALD----------------TFCRSSELAD 472
Query: 293 FKAP-RLFVLWRKPFPLTSTGKIRRDEVRREVMS 325
FK P R F+L P + K+ R ++ ++V S
Sbjct: 473 FKRPKRYFIL--DQLPKNALNKVLRRQLVQQVSS 504
>pdb|3TSY|A Chain A, 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Protein
Length = 979
Score = 68.6 bits (166), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 79/328 (24%), Positives = 118/328 (35%), Gaps = 36/328 (10%)
Query: 4 LMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKIL 63
L VGA + +PKFE LE +++ VT VP I+ +A +K S++ +
Sbjct: 293 LRVGAAILIMPKFEINLLLELIQRCKVTVAPMVPPIVLAIAKSSETEKY--DLSSIRVVK 350
Query: 64 NGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLY--DPTLETPGQLPQAFGN 121
+G L EL FP AKL YGMTE L + +P G N
Sbjct: 351 SGAAPLGKELEDAVNAKFPNAKLGQGYGMTEAGPVLAMSLGFAKEPFPVKSGACGTVVRN 410
Query: 122 VTPNSVHQPQGVCVGKPAPHVELKVCSDGSSHVGRILTRGAHVMLRYWDQFLAKPSVSTG 181
V G + + P G I RG +M Y + A
Sbjct: 411 AEMKIVDPDTGDSLSRNQP--------------GEICIRGHQIMKGYLNNPAATAETIDK 456
Query: 182 EVWLXXXXXXXXXXXXNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPXXXXXXXXXXAN 241
+ WL +++V R IK G V P E+EA+L+ HP
Sbjct: 457 DGWLHTGDIGLIDDDDELFIVDRLKELIKYKGFQVAPAELEALLIGHPDITDVAVVAMKE 516
Query: 242 ARLTEMVVACVRLRESWQWSESNCDQXXXXXXXXXXXXXXRQHCREKNLTGFKAPRLFVL 301
E+ VA V + + SE + Q +Q K + V
Sbjct: 517 EAAGEVPVAFVVKSKDSELSEDDVKQ-----------FVSKQVVFYKRINK-------VF 558
Query: 302 WRKPFPLTSTGKIRRDEVRREVMSHLKS 329
+ + P +GKI R ++R ++ + L S
Sbjct: 559 FTESIPKAPSGKILRKDLRAKLANGLGS 586
>pdb|1T5H|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE UNLIGANDED,
SELENOMETHIONINE
Length = 504
Score = 68.2 bits (165), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 77/333 (23%), Positives = 125/333 (37%), Gaps = 52/333 (15%)
Query: 1 MAMLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVK 60
+A L + +V + +F AL+ V+Q VTSL P + LA + DS++
Sbjct: 216 VAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLR 275
Query: 61 KILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPG-----QL 115
+ G P +++ P K ++ YG TE +SL T PG ++
Sbjct: 276 HVTFAGATXPDAVLETVHQHLPGEK-VNIYGTTEAXNSLYXRQPKTGTEXAPGFFSEVRI 334
Query: 116 PQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDGSSHVGRILTRGAHVMLRYWDQFLAK 175
+ G V + +G EL V + S+ VG +L +
Sbjct: 335 VRIGGGVDEIVANGEEG----------ELIVAASDSAFVG----------------YLNQ 368
Query: 176 PSVSTGEV---WLXXXXXXXXXXXXNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPXXX 232
P + ++ W V ++GR + I SGGEN++P E+E VL P
Sbjct: 369 PQATAEKLQDGWYRTSDVAVWTPEGTVRILGRVDDXIISGGENIHPSEIERVLGTAPGVT 428
Query: 233 XXXXXXXANARLTEMVVACVRLRESWQWSESNCDQXXXXXXXXXXXXXXRQHCREKNLTG 292
A+ R + V ACV R S D CR L
Sbjct: 429 EVVVIGLADQRWGQSVTACVVPRLGETLSADALD----------------TFCRSSELAD 472
Query: 293 FKAPRLFVLWRKPFPLTSTGKIRRDEVRREVMS 325
FK P+ + + + P + K+ R ++ ++V S
Sbjct: 473 FKRPKRYFILDQ-LPKNALNKVLRRQLVQQVSS 504
>pdb|3DLP|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, MUTANT D402P, BOUND
To 4cb
Length = 504
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 80/334 (23%), Positives = 126/334 (37%), Gaps = 54/334 (16%)
Query: 1 MAMLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVK 60
+A L + +V + +F AL+ V+Q VTSL P + LA + DS++
Sbjct: 216 VAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLR 275
Query: 61 KILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPG-----QL 115
+ G +P +++ P K ++ YG TE +SL T PG ++
Sbjct: 276 HVTFAGATMPDAVLETVHQHLPGEK-VNIYGTTEAMNSLYMRQPKTGTEMAPGFFSEVRI 334
Query: 116 PQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDGSSHVGRILTRGAHVMLRYWDQFLAK 175
+ G V + +G EL V + S+ VG +L +
Sbjct: 335 VRIGGGVDEIVANGEEG----------ELIVAASDSAFVG----------------YLNQ 368
Query: 176 PSVSTGEV---WLXXXXXXXXXXXXNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPXXX 232
P + ++ W V ++GR I SGGEN++P E+E VL P
Sbjct: 369 PQATAEKLQDGWYRTSDVAVWTPEGTVRILGRVPDMIISGGENIHPSEIERVLGTAPGVT 428
Query: 233 XXXXXXXANARLTEMVVACVRLRESWQWSESNCDQXXXXXXXXXXXXXXRQHCREKNLTG 292
A+ R + V ACV R S D CR L
Sbjct: 429 EVVVIGLADQRWGQSVTACVVPRLGETLSADALD----------------TFCRSSELAD 472
Query: 293 FKAP-RLFVLWRKPFPLTSTGKIRRDEVRREVMS 325
FK P R F+L + P + K+ R ++ ++V S
Sbjct: 473 FKRPKRYFILDQ--LPKNALNKVLRRQLVQQVSS 504
>pdb|4G36|A Chain A, Photinus Pyralis Luciferase In The Adenylate-Forming
Conformation Bound To Dlsa
pdb|4G36|B Chain B, Photinus Pyralis Luciferase In The Adenylate-Forming
Conformation Bound To Dlsa
Length = 555
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 61/268 (22%), Positives = 105/268 (39%), Gaps = 31/268 (11%)
Query: 1 MAMLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVK 60
+ L+ G V + +FE + L +++ + + S + VP + + A + K ++
Sbjct: 258 LGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLIDKY--DLSNLH 315
Query: 61 KILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFG 120
+I +GG L E+ + F + YG+TET+S++
Sbjct: 316 EIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAIL-------------------- 355
Query: 121 NVTPNSVHQPQGVCVGKPAPHVELKVC------SDGSSHVGRILTRGAHVMLRYWDQFLA 174
+TP +P VGK P E KV + G + G + RG +M Y + A
Sbjct: 356 -ITPEGDDKPG--AVGKVVPFFEAKVVDLDTGKTLGVNQRGELCVRGPMIMSGYVNNPEA 412
Query: 175 KPSVSTGEVWLXXXXXXXXXXXXNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPXXXXX 234
++ + WL + ++V R IK G V P E+E++LLQHP
Sbjct: 413 TNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESILLQHPNIFDA 472
Query: 235 XXXXXANARLTEMVVACVRLRESWQWSE 262
+ E+ A V L +E
Sbjct: 473 GVAGLPDDDAGELPAAVVVLEHGKTMTE 500
>pdb|1BA3|A Chain A, Firefly Luciferase In Complex With Bromoform
pdb|1LCI|A Chain A, Firefly Luciferase
pdb|3RIX|A Chain A, 1.7a Resolution Structure Of A Firefly
Luciferase-Aspulvinone J Inhibitor Complex
pdb|4E5D|A Chain A, 2.2a Resolution Structure Of A Firefly
Luciferase-Benzothiazole Inhibitor Complex
Length = 550
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 61/268 (22%), Positives = 105/268 (39%), Gaps = 31/268 (11%)
Query: 1 MAMLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVK 60
+ L+ G V + +FE + L +++ + + S + VP + + A + K ++
Sbjct: 253 LGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLIDKY--DLSNLH 310
Query: 61 KILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFG 120
+I +GG L E+ + F + YG+TET+S++
Sbjct: 311 EIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAIL-------------------- 350
Query: 121 NVTPNSVHQPQGVCVGKPAPHVELKVC------SDGSSHVGRILTRGAHVMLRYWDQFLA 174
+TP +P VGK P E KV + G + G + RG +M Y + A
Sbjct: 351 -ITPEGDDKPG--AVGKVVPFFEAKVVDLDTGKTLGVNQRGELCVRGPMIMSGYVNNPEA 407
Query: 175 KPSVSTGEVWLXXXXXXXXXXXXNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPXXXXX 234
++ + WL + ++V R IK G V P E+E++LLQHP
Sbjct: 408 TNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESILLQHPNIFDA 467
Query: 235 XXXXXANARLTEMVVACVRLRESWQWSE 262
+ E+ A V L +E
Sbjct: 468 GVAGLPDDDAGELPAAVVVLEHGKTMTE 495
>pdb|3IEP|A Chain A, Firefly Luciferase Apo Structure (P41 Form)
pdb|3IER|A Chain A, Firefly Luciferase Apo Structure (P41 Form) With Peg 400
Bound
pdb|3IES|A Chain A, Firefly Luciferase Inhibitor Complex
Length = 551
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 61/268 (22%), Positives = 105/268 (39%), Gaps = 31/268 (11%)
Query: 1 MAMLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVK 60
+ L+ G V + +FE + L +++ + + S + VP + + A + K ++
Sbjct: 253 LGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLIDKY--DLSNLH 310
Query: 61 KILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFG 120
+I +GG L E+ + F + YG+TET+S++
Sbjct: 311 EIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAIL-------------------- 350
Query: 121 NVTPNSVHQPQGVCVGKPAPHVELKVC------SDGSSHVGRILTRGAHVMLRYWDQFLA 174
+TP +P VGK P E KV + G + G + RG +M Y + A
Sbjct: 351 -ITPEGDDKPG--AVGKVVPFFEAKVVDLDTGKTLGVNQRGELCVRGPMIMSGYVNNPEA 407
Query: 175 KPSVSTGEVWLXXXXXXXXXXXXNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPXXXXX 234
++ + WL + ++V R IK G V P E+E++LLQHP
Sbjct: 408 TNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESILLQHPNIFDA 467
Query: 235 XXXXXANARLTEMVVACVRLRESWQWSE 262
+ E+ A V L +E
Sbjct: 468 GVAGLPDDDAGELPAAVVVLEHGKTMTE 495
>pdb|4G37|A Chain A, Structure Of Cross-Linked Firefly Luciferase In Second
Catalytic Conformation
pdb|4G37|B Chain B, Structure Of Cross-Linked Firefly Luciferase In Second
Catalytic Conformation
Length = 555
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 62/268 (23%), Positives = 106/268 (39%), Gaps = 31/268 (11%)
Query: 1 MAMLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVK 60
+ L+ G V + +FE + L +++ + + S + VP + + LA + K ++
Sbjct: 258 LGYLISGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFLAKSTLIDKY--DLSNLH 315
Query: 61 KILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFG 120
+I +GG L E+ + F + YG+TET+S++
Sbjct: 316 EIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAIL-------------------- 355
Query: 121 NVTPNSVHQPQGVCVGKPAPHVELKVC------SDGSSHVGRILTRGAHVMLRYWDQFLA 174
+TP +P VGK P E KV + G + G + RG +M Y + A
Sbjct: 356 -ITPKGDDKPG--AVGKVVPFFEAKVVDLDTGKTLGVNQRGELSVRGPMIMSGYVNNPEA 412
Query: 175 KPSVSTGEVWLXXXXXXXXXXXXNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPXXXXX 234
++ + WL + ++V R IK G V P E+E++LLQHP
Sbjct: 413 TNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGCQVAPAELESILLQHPNIFDA 472
Query: 235 XXXXXANARLTEMVVACVRLRESWQWSE 262
+ E+ A V L +E
Sbjct: 473 GVAGLPDDDAGELPAAVVVLEHGKTMTE 500
>pdb|3QYA|A Chain A, Crystal Structure Of A Red-Emitter Mutant Of Lampyris
Turkestanicus Luciferase
Length = 582
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 60/268 (22%), Positives = 102/268 (38%), Gaps = 30/268 (11%)
Query: 1 MAMLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVK 60
+ L G V + +FE + L +++ + + S + VP + + A V K ++
Sbjct: 287 LGYLTCGFRIVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLVDKY--DLSNLH 344
Query: 61 KILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFG 120
+I +GG L E+ + F + YG+TET+S++
Sbjct: 345 EIASGGAPLAKEVGEAVAKRFKLPGIRQGYGLTETTSAII-------------------- 384
Query: 121 NVTPNSVHQPQGVCVGKPAPHVELKVC------SDGSSHVGRILTRGAHVMLRYWDQFLA 174
+TP G C GK P K+ + G + G + +G +M Y + A
Sbjct: 385 -ITPRGRDDKPGAC-GKVVPFFSAKIVDLDTGKTLGVNQRGELCVKGPMIMKGYVNNPEA 442
Query: 175 KPSVSTGEVWLXXXXXXXXXXXXNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPXXXXX 234
++ + WL ++V R IK G V P E+E++LLQHP
Sbjct: 443 TSALIDKDGWLHSGDIAYYDKDGYFFIVDRLKSLIKYKGYQVPPAELESILLQHPFIFDA 502
Query: 235 XXXXXANARLTEMVVACVRLRESWQWSE 262
+ E+ A V L E +E
Sbjct: 503 GVAGIPDPDAGELPAAVVVLEEGKTMTE 530
>pdb|2D1Q|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With Mgatp
pdb|2D1R|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With Oxyluciferin And Amp
Length = 548
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 59/235 (25%), Positives = 97/235 (41%), Gaps = 31/235 (13%)
Query: 1 MAMLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVK 60
+ L+ G V + KF+ ++ L+ ++ + TS+I VP + A L + K ++
Sbjct: 255 LGYLICGFRVVMLTKFDEETFLKTLQDYKCTSVILVPTLFAILNKSELLNKY--DLSNLV 312
Query: 61 KILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFG 120
+I +GG L E+ + F + YG+TET+S++
Sbjct: 313 EIASGGAPLSKEVGEAVARRFNLPGVRQGYGLTETTSAII-------------------- 352
Query: 121 NVTPNSVHQPQGVCVGKPAPHVELKVC------SDGSSHVGRILTRGAHVMLRYWDQFLA 174
+TP +P GK P + KV S G + G + +G +M Y + A
Sbjct: 353 -ITPEGDDKPG--ASGKVVPLFKAKVIDLDTKKSLGPNRRGEVCVKGPMLMKGYVNNPEA 409
Query: 175 KPSVSTGEVWLXXXXXXXXXXXXNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHP 229
+ E WL + ++V R IK G V P E+E+VLLQHP
Sbjct: 410 TKELIDEEGWLHTGDIGYYDEEKHFFIVDRLKSLIKYKGYQVPPAELESVLLQHP 464
>pdb|2D1S|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With High-Energy Intermediate
Analogue
Length = 548
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 59/235 (25%), Positives = 97/235 (41%), Gaps = 31/235 (13%)
Query: 1 MAMLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVK 60
+ L+ G V + KF+ ++ L+ ++ + TS+I VP + A L + K ++
Sbjct: 255 LGYLICGFRVVMLTKFDEETFLKTLQDYKCTSVILVPTLFAILNKSELLNKY--DLSNLV 312
Query: 61 KILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFG 120
+I +GG L E+ + F + YG+TET+S++
Sbjct: 313 EIASGGAPLSKEVGEAVARRFNLPGVRQGYGLTETTSAII-------------------- 352
Query: 121 NVTPNSVHQPQGVCVGKPAPHVELKVC------SDGSSHVGRILTRGAHVMLRYWDQFLA 174
+TP +P GK P + KV S G + G + +G +M Y + A
Sbjct: 353 -ITPEGDDKPG--ASGKVVPLFKAKVIDLDTKKSLGPNRRGEVCVKGPMLMKGYVNNPEA 409
Query: 175 KPSVSTGEVWLXXXXXXXXXXXXNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHP 229
+ E WL + ++V R IK G V P E+E+VLLQHP
Sbjct: 410 TKELIDEEGWLHTGDIGYYDEEKHFFIVDRLKSLIKYKGYQVPPAELESVLLQHP 464
>pdb|3IPL|A Chain A, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
pdb|3IPL|B Chain B, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
pdb|3IPL|C Chain C, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
Length = 501
Score = 58.9 bits (141), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 73/323 (22%), Positives = 127/323 (39%), Gaps = 74/323 (22%)
Query: 12 FIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPS 71
+ KF ++ L ++ +T + VP + L +++ +++KIL GG L +
Sbjct: 234 IVDKFNAEQILTMIKNERITHISLVPQTLNWL-----MQQGLHEPYNLQKILLGGAKLSA 288
Query: 72 ELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVH-QP 130
+++ A + +++GMTET S F TP +H +P
Sbjct: 289 TMIETALQY--NLPIYNSFGMTETCSQ--------------------FLTATPEMLHARP 326
Query: 131 QGVCVGKPAPHVELKVCSDGSSHVGRILTRGAHVMLRYWDQFLAKPSVSTGEV---WLXX 187
VG P+ +V++K+ + G ++ +GA+VM Y P+ TG +
Sbjct: 327 D--TVGMPSANVDVKIKNPNKEGHGELMIKGANVMNGYL-----YPTDLTGTFENGYFNT 379
Query: 188 XXXXXXXXXXNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPXXXXXXXXXXANARLTEM 247
V + RR I SGGEN+YP ++E V Q P
Sbjct: 380 GDIAEIDHEGYVMIYDRRKDLIISGGENIYPYQIETVAKQFPGISD-------------- 425
Query: 248 VVACV--------RLRESWQWSESNCDQXXXXXXXXXXXXXXRQHCREKNLTGFKAPRLF 299
CV ++ + + SES+ + K+L +K P+ F
Sbjct: 426 -AVCVGHPDDTWGQVPKLYFVSESDISKAQLIAYL------------SKHLAKYKVPKHF 472
Query: 300 VLWRKPFPLTSTGKIRRDEVRRE 322
P TSTGK++R+++ RE
Sbjct: 473 E-KVDTLPYTSTGKLQRNKLYRE 494
>pdb|2D1T|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Red-Color Emission S286n Mutant Complexed
With High-Energy Intermediate Analogue
Length = 548
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 58/235 (24%), Positives = 97/235 (41%), Gaps = 31/235 (13%)
Query: 1 MAMLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVK 60
+ L+ G V + KF+ ++ L+ ++ + T++I VP + A L + K ++
Sbjct: 255 LGYLICGFRVVMLTKFDEETFLKTLQDYKCTNVILVPTLFAILNKSELLNKY--DLSNLV 312
Query: 61 KILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFG 120
+I +GG L E+ + F + YG+TET+S++
Sbjct: 313 EIASGGAPLSKEVGEAVARRFNLPGVRQGYGLTETTSAII-------------------- 352
Query: 121 NVTPNSVHQPQGVCVGKPAPHVELKVC------SDGSSHVGRILTRGAHVMLRYWDQFLA 174
+TP +P GK P + KV S G + G + +G +M Y + A
Sbjct: 353 -ITPEGDDKPG--ASGKVVPLFKAKVIDLDTKKSLGPNRRGEVCVKGPMLMKGYVNNPEA 409
Query: 175 KPSVSTGEVWLXXXXXXXXXXXXNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHP 229
+ E WL + ++V R IK G V P E+E+VLLQHP
Sbjct: 410 TKELIDEEGWLHTGDIGYYDEEKHFFIVDRLKSLIKYKGYQVPPAELESVLLQHP 464
>pdb|3ETC|A Chain A, 2.1 A Structure Of Acyl-Adenylate Synthetase From
Methanosarcina Acetivorans Containing A Link Between
Lys256 And Cys298
pdb|3ETC|B Chain B, 2.1 A Structure Of Acyl-Adenylate Synthetase From
Methanosarcina Acetivorans Containing A Link Between
Lys256 And Cys298
Length = 580
Score = 57.8 bits (138), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 78/339 (23%), Positives = 131/339 (38%), Gaps = 66/339 (19%)
Query: 6 VGACHVFI---PKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKI 62
+ C VF+ +FE+K+ LE ++ VT+ P I LI+ + ++K
Sbjct: 290 IAGCAVFVYDYDRFEAKNMLEKASKYGVTTFCAPPTI---YRFLIKEDLSHYNFSTLKYA 346
Query: 63 LNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNV 122
+ G L E+ F KL+ +G TET ++ +P PG
Sbjct: 347 VVAGEPLNPEVFNRFL-EFTGIKLMEGFGQTETVVTIATFPWMEPK---PGS-------- 394
Query: 123 TPNSVHQPQGVCVGKPAP--HVEL--------KVCSDGSSHVGRILTRGAHVMLRYWDQF 172
+GKP P +EL +V +G + + + + + Y
Sbjct: 395 ------------IGKPTPGYKIELMDRDGRLCEVGEEGEIVINTMEGKPVGLFVHY---- 438
Query: 173 LAKPSVSTGEVWLXXXXXXXXXXXXN----VWLVGRRNGRIKSGGENVYPEEVEAVLLQH 228
K T E W + +W VGR + IK+ G V P EVE+ L+QH
Sbjct: 439 -GKDPERTEETWHDGYYHTGDMAWMDEDGYLWFVGRADDIIKTSGYKVGPFEVESALIQH 497
Query: 229 PXXXXXXXXXXANARLTEMVVACVRLRESWQWSESNCDQXXXXXXXXXXXXXXRQHCREK 288
P + +++ A + L + + S+S ++ + H K
Sbjct: 498 PAVLECAITGVPDPVRGQVIKATIVLTKDYTPSDSLKNE-------------LQDHV--K 542
Query: 289 NLTG-FKAPRLFVLWRKPFPLTSTGKIRRDEVRREVMSH 326
N+T +K PR+ + + P T +GKIRR E+R + S
Sbjct: 543 NVTAPYKYPRI-IEFVPELPKTISGKIRRVEIRDKDQSQ 580
>pdb|3O82|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine
pdb|3O82|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine
pdb|3O83|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
2-(4-N-Dodecyl-1,2,
3-Triazol-1-Yl)-5'-O-[n-(2-Hydroxybenzoyl)
Sulfamoyl]adenosine
pdb|3O83|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
2-(4-N-Dodecyl-1,2,
3-Triazol-1-Yl)-5'-O-[n-(2-Hydroxybenzoyl)
Sulfamoyl]adenosine
pdb|3O84|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-Phenyl-1-(Pyridin-4-Ylmethyl)-1h-Pyrazolo[3,
4-B]pyridine-4- Carboxylic Acid.
pdb|3O84|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-Phenyl-1-(Pyridin-4-Ylmethyl)-1h-Pyrazolo[3,
4-B]pyridine-4- Carboxylic Acid.
pdb|3U16|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzyloxy)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid.
pdb|3U16|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzyloxy)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid.
pdb|3U17|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzoyl)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid
pdb|3U17|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzoyl)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid
Length = 544
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 68/323 (21%), Positives = 121/323 (37%), Gaps = 43/323 (13%)
Query: 1 MAMLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVK 60
+ +L G C V P E + +++H V VP+ A ++ ++K + +D ++
Sbjct: 253 LGVLHAGGCVVMAPNPEPLNCFSIIQRHQVNMASLVPS-----AVIMWLEKAAQYKDQIQ 307
Query: 61 --KILN-GGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQ 117
K+L GG P L ++ KL +GM E + T + D + T P
Sbjct: 308 SLKLLQVGGASFPESLARQVPEVL-NCKLQQVFGMAEGLVNYTRLDDSDEQIFTTQGRPI 366
Query: 118 AFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDGSSHVGRILTRGAHVMLRYWDQFLAKPS 177
+ + Q + V G+ +G + TRG + Y+
Sbjct: 367 SSDDEIKIVDEQYREVPEGE----------------IGMLATRGPYTFCGYYQSPEHNSQ 410
Query: 178 VSTGEVWLXXXXXXXXXXXXNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPXXXXXXXX 237
V + + N+ +VGR +I GGE + EE+E ++L HP
Sbjct: 411 VFDEDNYYYSGDLVQRTPDGNLRVVGRIKDQINRGGEKIASEEIEKLILLHP-------- 462
Query: 238 XXANARLTEMVVACVRLRESWQWSESNCDQXXXXXXXXXXXXXXRQHCREKNLTGFKAPR 297
E++ A + Q+ E +C R+H E + +K P
Sbjct: 463 --------EVMHAALVAIVDEQFGEKSC-AFIVSRNPELKAVVLRRHLMELGIAQYKLPD 513
Query: 298 LFVLWRKPFPLTSTGKIRRDEVR 320
L + PLT+ GK+ + ++R
Sbjct: 514 QIKLI-ESLPLTAVGKVDKKQLR 535
>pdb|3NYQ|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With
Methylmalonyl-Coa And Amp Bound
pdb|3NYR|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With
Malonyl-Coa And Amp Bound
Length = 505
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 62/252 (24%), Positives = 97/252 (38%), Gaps = 43/252 (17%)
Query: 15 KFESKSALEAVEQHCVTSLITVPAIMADLA-TLIRVKKTWKGRDSVKKILNGGGGLP--- 70
+F ++ A + T L VP + +A TL + K + +++G LP
Sbjct: 230 RFSTEGAARELNDGA-TMLFGVPTMYHRIAETLPADPELAKALAGARLLVSGSAALPVHD 288
Query: 71 SELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQP 130
E + AT ++I YGMTET N + + +P
Sbjct: 289 HERIAAATGR----RVIERYGMTET-----------------------LMNTSVRADGEP 321
Query: 131 QGVCVGKPAPHVELKVCS---------DGSSHVGRILTRGAHVMLRYWDQFLAKPSVSTG 181
+ VG P P VEL++ DG S VG I RG ++ Y ++ A + T
Sbjct: 322 RAGTVGVPLPGVELRLVEEDGTPIAALDGES-VGEIQVRGPNLFTEYLNRPDATAAAFTE 380
Query: 182 EVWLXXXXXXXXXXXXNVWLVGRR-NGRIKSGGENVYPEEVEAVLLQHPXXXXXXXXXXA 240
+ + V +VGR+ IKSGG + E+E LL+HP
Sbjct: 381 DGFFRTGDMAVRDPDGYVRIVGRKATDLIKSGGYKIGAGEIENALLEHPEVREAAVTGEP 440
Query: 241 NARLTEMVVACV 252
+ L E +VA +
Sbjct: 441 DPDLGERIVAWI 452
>pdb|3IVR|A Chain A, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa
Ligase From Rhodopseudomonas Palustris Cga009
pdb|3IVR|B Chain B, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa
Ligase From Rhodopseudomonas Palustris Cga009
Length = 509
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 60/239 (25%), Positives = 87/239 (36%), Gaps = 45/239 (18%)
Query: 1 MAMLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVK 60
+ + G V KF+ A +E H VT +MA+ A ++ +
Sbjct: 220 LTLQQAGGASVIAAKFDPAQAARDIEAHKVT-------VMAEFAPMLGNILDQAAPAQLA 272
Query: 61 KILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFG 120
+ G E ++ + P A + +G +ETS TF D
Sbjct: 273 SLRAVTGLDTPETIERFEATCPNATFWATFGQSETSGLSTFAPYRD-------------- 318
Query: 121 NVTPNSVHQP---QGVCV----GKPAPHVELKVCSDGSSHVGRILTRGAHVMLRYWDQFL 173
P S +P + V V +P P E VG I+ RG V YW+
Sbjct: 319 --RPKSAGRPLFWRTVAVVDAEDRPLPPGE----------VGEIVLRGPTVFKGYWNNAA 366
Query: 174 A-KPSVSTGEVWLXXXXXXXXXXXXNVWLVGRRNGR--IKSGGENVYPEEVEAVLLQHP 229
A + + G W ++ GR + IK+GGENVYP EVE L QHP
Sbjct: 367 ATQHAFRNG--WHHTGDMGRFDADGYLFYAGRAPEKELIKTGGENVYPAEVEGALKQHP 423
>pdb|4FUQ|A Chain A, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|B Chain B, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|C Chain C, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|D Chain D, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
Length = 503
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 67/317 (21%), Positives = 114/317 (35%), Gaps = 40/317 (12%)
Query: 4 LMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKIL 63
L +F+PKF+ L+ + V L VP L R+ K G + +
Sbjct: 219 LFARGSXIFLPKFDPDKILDLXARATV--LXGVPTFYTRLLQSPRLTKETTGH--XRLFI 274
Query: 64 NGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVT 123
+G L ++ +E + A ++ YG TET+ + + YD ++P A G
Sbjct: 275 SGSAPLLADTHREWSAKTGHA-VLERYGXTETNXNTS--NPYDGD-----RVPGAVGPAL 326
Query: 124 PNSVHQPQGVCVGKPAPHVELKVCSDGSSHVGRILTRGAHVMLRYWDQFLAKPSVSTGEV 183
P + GK P +G I +G +V YW S +
Sbjct: 327 PGVSARVTDPETGKELPR----------GDIGXIEVKGPNVFKGYWRXPEKTKSEFRDDG 376
Query: 184 WLXXXXXXXXXXXXNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPXXXXXXXXXXANAR 243
+ V ++GR + +GG NVYP+E+E+ + P +A
Sbjct: 377 FFITGDLGKIDERGYVHILGRGKDLVITGGFNVYPKEIESEIDAXPGVVESAVIGVPHAD 436
Query: 244 LTEMVVACVRLRESWQWSESNCDQXXXXXXXXXXXXXXRQHCREKNLTGFKAPRLFVLWR 303
E V A V + E+ H + L FK P+ V++
Sbjct: 437 FGEGVTAVVVRDKGATIDEAQV-----------------LHGLDGQLAKFKXPKK-VIFV 478
Query: 304 KPFPLTSTGKIRRDEVR 320
P + GK++++ +R
Sbjct: 479 DDLPRNTXGKVQKNVLR 495
>pdb|1MD9|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb And Amp
Length = 539
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 55/226 (24%), Positives = 83/226 (36%), Gaps = 31/226 (13%)
Query: 115 LPQAFGN----VTPNSVHQPQGVCV---GKP-APHVELKVCSDGSSHV-----GRILTRG 161
L Q FG V + P+ + V GKP +P+ E +V D V G +LTRG
Sbjct: 326 LQQVFGXAEGLVNYTRLDDPEEIIVNTQGKPXSPYDESRVWDDHDRDVKPGETGHLLTRG 385
Query: 162 AHVMLRYWDQFLAKPSVSTGEVWLXXXXXXXXXXXXNVWLVGRRNGRIKSGGENVYPEEV 221
+ + Y+ + T + + + + GR +I GGE V EEV
Sbjct: 386 PYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTRDGYIVVEGRAKDQINRGGEKVAAEEV 445
Query: 222 EAVLLQHPXXXXXXXXXXANARLTEMVVACVRLRESWQWSESNCDQXXXXXXXXXXXXXX 281
E LL HP + L E + R+
Sbjct: 446 ENHLLAHPAVHDAAXVSXPDQFLGERSCVFIIPRDE-----------------APKAAEL 488
Query: 282 RQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVRREVMSHL 327
+ RE+ L +K P V + + FP T GK+ + +R + L
Sbjct: 489 KAFLRERGLAAYKIPDR-VEFVESFPQTGVGKVSKKALREAISEKL 533
>pdb|1MDB|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb-adenylate
pdb|1MDF|A Chain A, Crystal Structure Of Dhbe In Absence Of Substrate
Length = 539
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 53/226 (23%), Positives = 81/226 (35%), Gaps = 31/226 (13%)
Query: 115 LPQAFGN----VTPNSVHQPQGVCV---GKP-APHVELKVCSDGSSHV-----GRILTRG 161
L Q FG V + P+ + V GKP +P+ E +V D V G +LTRG
Sbjct: 326 LQQVFGMAEGLVNYTRLDDPEEIIVNTQGKPMSPYDESRVWDDHDRDVKPGETGHLLTRG 385
Query: 162 AHVMLRYWDQFLAKPSVSTGEVWLXXXXXXXXXXXXNVWLVGRRNGRIKSGGENVYPEEV 221
+ + Y+ + T + + + + GR +I GGE V EEV
Sbjct: 386 PYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTRDGYIVVEGRAKDQINRGGEKVAAEEV 445
Query: 222 EAVLLQHPXXXXXXXXXXANARLTEMVVACVRLRESWQWSESNCDQXXXXXXXXXXXXXX 281
E LL HP + L E + R+
Sbjct: 446 ENHLLAHPAVHDAAMVSMPDQFLGERSCVFIIPRDE-----------------APKAAEL 488
Query: 282 RQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVRREVMSHL 327
+ RE+ L +K P V + + FP T GK+ + +R + L
Sbjct: 489 KAFLRERGLAAYKIPDR-VEFVESFPQTGVGKVSKKALREAISEKL 533
>pdb|3RG2|A Chain A, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|B Chain B, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|C Chain C, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|D Chain D, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|E Chain E, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|F Chain F, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|G Chain G, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|H Chain H, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|I Chain I, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|J Chain J, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
Length = 617
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/186 (22%), Positives = 68/186 (36%), Gaps = 29/186 (15%)
Query: 136 GKPAPHVELKVCSDGSSHVGRILTRGAHVMLRYWDQFLAKPSVSTGEVWLXXXXXXXXXX 195
G P P E VGR++TRG + Y+ S +
Sbjct: 374 GNPLPQGE----------VGRLMTRGPYTFRGYYKSPQHNASAFDANGFYCSGDLISIDP 423
Query: 196 XXNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPXXXXXXXXXXANARLTEMVVACVRLR 255
+ + GR +I GGE + EE+E +LL+HP + + E A + ++
Sbjct: 424 EGYITVQGREKDQINRGGEKIAAEEIENLLLRHPAVIYAALVSMEDELMGEKSCAYLVVK 483
Query: 256 ESWQWSESNCDQXXXXXXXXXXXXXXRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIR 315
E + R+ RE+ + FK P V PLT+ GK+
Sbjct: 484 EPLR------------------AVQVRRFLREQGIAEFKLPDR-VECVDSLPLTAVGKVD 524
Query: 316 RDEVRR 321
+ ++R+
Sbjct: 525 KKQLRQ 530
>pdb|4GXR|A Chain A, Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3
Length = 503
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 68/310 (21%), Positives = 112/310 (36%), Gaps = 40/310 (12%)
Query: 11 VFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLP 70
+F+P F+ L+ + + V L+ VP L R+ G ++ ++G L
Sbjct: 226 IFLPXFDPDXILDLMARATV--LMGVPTFYTRLLQSPRLTXETTGH--MRLFISGSAPLL 281
Query: 71 SELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQP 130
++ +E + A L YGMTET+ + + YD ++P A G P +
Sbjct: 282 ADTHREWSAXTGHAVL-ERYGMTETNMNTS--NPYDGD-----RVPGAVGPALPGVSAR- 332
Query: 131 QGVCVGKPAPHVELKVCSDGSSHVGRILTRGAHVMLRYWDQFLAKPSVSTGEVWLXXXXX 190
V P EL +G I G +V YW S + +
Sbjct: 333 ----VTDPETGXELP-----RGDIGMIEVXGPNVFXGYWRMPEXTXSEFRDDGFFITGDL 383
Query: 191 XXXXXXXNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPXXXXXXXXXXANARLTEMVVA 250
V ++GR + +GG NVYP E+E+ + P +A E V A
Sbjct: 384 GXIDERGYVHILGRGXDLVITGGFNVYPXEIESEIDAMPGVVESAVIGVPHADFGEGVTA 443
Query: 251 CVRLRESWQWSESNCDQXXXXXXXXXXXXXXRQHCREKNLTGFKAPRLFVLWRKPFPLTS 310
V L + SE+ H + L F P V++ P +
Sbjct: 444 FVVLXREFAPSEAQV-----------------LHGLDGQLAXFXMPXX-VIFVDDLPRNT 485
Query: 311 TGKIRRDEVR 320
G ++ + +R
Sbjct: 486 MGAVQXNVLR 495
>pdb|3R44|A Chain A, Mycobacterium Tuberculosis Fatty Acyl Coa Synthetase
Length = 517
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 67/323 (20%), Positives = 126/323 (39%), Gaps = 51/323 (15%)
Query: 5 MVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDS--VKKI 62
M G + +P+F++ + + V VPAI+ +R + D+ +
Sbjct: 234 MRGVTLISMPQFDATKVWSLIVEERVCIGGAVPAIL----NFMRQVPEFAELDAPDFRYF 289
Query: 63 LNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQA--FG 120
+ GG +P L+K + +++ Y +TE+ T + L + L G +A F
Sbjct: 290 ITGGAPMPEALIK--IYAAKNIEVVQGYALTESCGGGTLL-LSEDALRKAGSAGRATMFT 346
Query: 121 NVTPNSVHQPQGVCVGKPAPHVELKVCSDGSSHVGRILTRGAHVMLRYWDQFLA-KPSVS 179
+V +V GV H E G ++ + ++ YW++ A + +
Sbjct: 347 DV---AVRGDDGVI----REHGE-----------GEVVIKSDILLKEYWNRPEATRDAFD 388
Query: 180 TGEVWLXXXXXXXXXXXXNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPXXXXXXXXXX 239
G W +++ R I SGGENVYP E+E+V++ P
Sbjct: 389 NG--WFRTGDIGEIDDEGYLYIKDRLKDMIISGGENVYPAEIESVIIGVPGVSEVAVIGL 446
Query: 240 ANARLTEMVVACVRLRESWQWSESNCDQXXXXXXXXXXXXXXRQHCREKNLTGFKAPRLF 299
+ + E+ A V + + + SE ++C + L +K P+
Sbjct: 447 PDEKWGEIAAAIV-VADQNEVSEQQI----------------VEYCGTR-LARYKLPKK- 487
Query: 300 VLWRKPFPLTSTGKIRRDEVRRE 322
V++ + P TGKI + +R +
Sbjct: 488 VIFAEAIPRNPTGKILKTVLREQ 510
>pdb|4GXQ|A Chain A, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
pdb|4GXQ|B Chain B, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
pdb|4GXQ|C Chain C, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
Length = 506
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 60/252 (23%), Positives = 95/252 (37%), Gaps = 22/252 (8%)
Query: 11 VFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLP 70
+F+P F+ L+ + + V L+ VP L R+ G ++ ++G L
Sbjct: 226 IFLPXFDPDXILDLMARATV--LMGVPTFYTRLLQSPRLTXETTGH--MRLFISGSAPLL 281
Query: 71 SELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQP 130
++ +E + A L YGMTET+ + + YD ++P A G P +
Sbjct: 282 ADTHREWSAXTGHAVL-ERYGMTETNMNTS--NPYDGD-----RVPGAVGPALPGVSAR- 332
Query: 131 QGVCVGKPAPHVELKVCSDGSSHVGRILTRGAHVMLRYWDQFLAKPSVSTGEVWLXXXXX 190
V P EL +G I G +V YW S + +
Sbjct: 333 ----VTDPETGXELP-----RGDIGMIEVXGPNVFXGYWRMPEXTXSEFRDDGFFITGDL 383
Query: 191 XXXXXXXNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPXXXXXXXXXXANARLTEMVVA 250
V ++GR + +GG NVYP E+E+ + P +A E V A
Sbjct: 384 GXIDERGYVHILGRGXDLVITGGFNVYPXEIESEIDAMPGVVESAVIGVPHADFGEGVTA 443
Query: 251 CVRLRESWQWSE 262
V L + SE
Sbjct: 444 FVVLXREFAPSE 455
>pdb|1RY2|A Chain A, Crystal Structure Of Yeast Acetyl-Coenzyme A Synthetase In
Complex With Amp
Length = 663
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/126 (23%), Positives = 53/126 (42%), Gaps = 14/126 (11%)
Query: 199 VWLVGRRNGRIKSGGENVYPEEVEAVLLQHPXXXXXXXXXXANARLTEMVVACVRLRESW 258
+W++GR + + G + E+EA +++ P + + V A V L+
Sbjct: 519 IWILGRVDDVVNVSGHRLSTAEIEAAIIEDPIVAECAVVGFNDDLTGQAVAAFVVLKNKS 578
Query: 259 QWSESNCDQXXXXXXXXXXXXXXRQH---CREKNLTGFKAPRLFVLWRKPFPLTSTGKIR 315
WS + D+ ++H K++ F AP+L +L P T +GKI
Sbjct: 579 SWSTATDDE----------LQDIKKHLVFTVRKDIGPFAAPKLIIL-VDDLPKTRSGKIM 627
Query: 316 RDEVRR 321
R +R+
Sbjct: 628 RRILRK 633
>pdb|2V7B|A Chain A, Crystal Structures Of A Benzoate Coa Ligase From
Burkholderia Xenovorans Lb400
pdb|2V7B|B Chain B, Crystal Structures Of A Benzoate Coa Ligase From
Burkholderia Xenovorans Lb400
Length = 529
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 69/326 (21%), Positives = 121/326 (37%), Gaps = 51/326 (15%)
Query: 4 LMVGACHVFIPKFESKSALEA-VEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKI 62
L VGA + + + + A+ A + +H T VP + A++ L+ + +++
Sbjct: 248 LSVGATAILMAERPTADAIFARLVEHRPTVFYGVPTLYANM--LVSPNLPARADVAIRIC 305
Query: 63 LNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNV 122
+ G LP E+ + T F +++ G TE F++
Sbjct: 306 TSAGEALPREIGERFTAHF-GCEILDGIGSTEMLH--IFLS------------------- 343
Query: 123 TPNSVHQPQGVCVGKPAPHVELKVCSDGSSH------VGRILTRGAHVMLRYWDQFLAKP 176
N + G+P P E+++ D + H VG + +G + YW+
Sbjct: 344 --NRAGAVEYGTTGRPVPGYEIEL-RDEAGHAVPDGEVGDLYIKGPSAAVMYWNNREKSR 400
Query: 177 SVSTGEVWLXXXXXXXXXXXXNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPXXXXXXX 236
+ GE W+ GR + +K G+ V P EVE VL+QH
Sbjct: 401 ATFLGE-WIRSGDKYCRLPNGCYVYAGRSDDMLKVSGQYVSPVEVEMVLVQHDAVLEAAV 459
Query: 237 XXXANARLTEMVVACVRLRESWQWSESNCDQXXXXXXXXXXXXXXRQHCREKNLTGFKAP 296
+ L + A V L+ + SE ++ + L K P
Sbjct: 460 VGVDHGGLVK-TRAFVVLKREFAPSEILAEELKAFV--------------KDRLAPHKYP 504
Query: 297 RLFVLWRKPFPLTSTGKIRRDEVRRE 322
R V + P T+TGKI+R ++R +
Sbjct: 505 RDIV-FVDDLPKTATGKIQRFKLREQ 529
>pdb|4FUT|A Chain A, Crystal Structure Of Atp Bound Matb From Rhodopseudomonas
Palustris
Length = 503
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 57/242 (23%), Positives = 91/242 (37%), Gaps = 22/242 (9%)
Query: 11 VFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLP 70
+F+P F+ L+ + + V L+ VP L R+ G ++ ++G L
Sbjct: 226 IFLPXFDPDXILDLMARATV--LMGVPTFYTRLLQSPRLTXETTGH--MRLFISGSAPLL 281
Query: 71 SELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQP 130
++ +E + A L YGMTET+ + + YD ++P A G P +
Sbjct: 282 ADTHREWSAXTGHAVL-ERYGMTETNMNTS--NPYDGD-----RVPGAVGPALPGVSAR- 332
Query: 131 QGVCVGKPAPHVELKVCSDGSSHVGRILTRGAHVMLRYWDQFLAKPSVSTGEVWLXXXXX 190
V P EL +G I G +V YW S + +
Sbjct: 333 ----VTDPETGXELP-----RGDIGMIEVXGPNVFXGYWRMPEXTXSEFRDDGFFITGDL 383
Query: 191 XXXXXXXNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPXXXXXXXXXXANARLTEMVVA 250
V ++GR + +GG NVYP E+E+ + P +A E V A
Sbjct: 384 GXIDERGYVHILGRGXDLVITGGFNVYPXEIESEIDAMPGVVESAVIGVPHADFGEGVTA 443
Query: 251 CV 252
V
Sbjct: 444 VV 445
>pdb|3E7W|A Chain A, Crystal Structure Of Dlta: Implications For The Reaction
Mechanism Of Non-Ribosomal Peptide Synthetase (Nrps)
Adenylation Domains
pdb|3E7X|A Chain A, Crystal Structure Of Dlta: Implications For The Reaction
Mechanism Of Non-Ribosomal Peptide Synthetase (Nrps)
Adenylation Domains
Length = 511
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 54/261 (20%), Positives = 87/261 (33%), Gaps = 29/261 (11%)
Query: 66 GGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPN 125
G LP + K FPKAK+ + YG TE + ++T + + + + LP F N
Sbjct: 269 GEVLPVSVAKALLERFPKAKIFNTYGPTEATVAVTSVEITNDVISRSESLPVGFAKPDMN 328
Query: 126 SVHQPQGVCVGKPAPHVELKVCSDGSSHVGRILTRGAHVMLRYWD--QFLAKPSVSTGEV 183
+ G+P P E G I+ G V Y + K S
Sbjct: 329 IFIMDEE---GQPLPEGE----------KGEIVIAGPSVSRGYLGEPELTEKAFFSHEGQ 375
Query: 184 WLXXXXXXXXXXXXNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPXXXXXXXXXXANAR 243
W ++ GR + +IK G + EE+E + Q
Sbjct: 376 WAYRTGDAGFIQDGQIFCQGRLDFQIKLHGYRMELEEIEFHVRQSQYVRSAVVIPYQPNG 435
Query: 244 LTEMVVACVRLRESWQWSESNCDQXXXXXXXXXXXXXXRQHCREKNLTGFKAPRLFVLWR 303
E ++A + E E +L + PR F+ ++
Sbjct: 436 TVEYLIAAIVPEEHEFEKEFQLTSAIKKELAA-------------SLPAYMIPRKFI-YQ 481
Query: 304 KPFPLTSTGKIRRDEVRREVM 324
+T+ GKI R + EV+
Sbjct: 482 DHIQMTANGKIDRKRIGEEVL 502
>pdb|1ULT|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1ULT|B Chain B, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V25|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V25|B Chain B, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V26|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V26|B Chain B, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
Length = 541
Score = 35.8 bits (81), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 55/241 (22%), Positives = 93/241 (38%), Gaps = 34/241 (14%)
Query: 2 AMLMVGACHVFI-PKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVK 60
A +VGA V P+ + S +E + VT VP + LA + + T +++
Sbjct: 239 AATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYL--ESTGHRLKTLR 296
Query: 61 KILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFG 120
+++ GG P L+ A ++ YG+TETS + Q F
Sbjct: 297 RLVVGGSAAPRSLI--ARFERMGVEVRQGYGLTETSPVVV----------------QNFV 338
Query: 121 NVTPNSVHQPQGVCV----GKPAPHVELKVCS--------DGSSHVGRILTRGAHVMLRY 168
S+ + + + + G P P V L+V DG + +G + +G + Y
Sbjct: 339 KSHLESLSEEEKLTLKAKTGLPIPLVRLRVADEEGRPVPKDGKA-LGEVQLKGPWITGGY 397
Query: 169 WDQFLAKPSVSTGEVWLXXXXXXXXXXXXNVWLVGRRNGRIKSGGENVYPEEVEAVLLQH 228
+ A S T + + V + R IKSGGE + ++E L+ H
Sbjct: 398 YGNEEATRSALTPDGFFRTGDIAVWDEEGYVEIKDRLKDLIKSGGEWISSVDLENALMGH 457
Query: 229 P 229
P
Sbjct: 458 P 458
>pdb|3FCC|A Chain A, Crystal Structure Of Dlta Protein In Complex With Atp And
Magnesium
pdb|3FCE|A Chain A, Crystal Structure Of Bacillus Cereus D-Alanyl Carrier
Protein Ligase Dlta In Complex With Atp: Implications
For Adenylation Mechanism
Length = 512
Score = 35.4 bits (80), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 35/62 (56%)
Query: 58 SVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQ 117
++K L G LP+E+ ++ FPKA +++ YG TE + ++T + + + L+ LP
Sbjct: 262 NMKTFLFCGEVLPNEVARKLIERFPKATIMNTYGPTEATVAVTGIHVTEEVLDQYKSLPV 321
Query: 118 AF 119
+
Sbjct: 322 GY 323
>pdb|3DHV|A Chain A, Crystal Structure Of Dlta Protein In Complex With
D-Alanine Adenylate
Length = 512
Score = 35.4 bits (80), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 35/62 (56%)
Query: 58 SVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQ 117
++K L G LP+E+ ++ FPKA +++ YG TE + ++T + + + L+ LP
Sbjct: 262 NMKTFLFCGEVLPNEVARKLIERFPKATIMNTYGPTEATVAVTGIHVTEEVLDQYKSLPV 321
Query: 118 AF 119
+
Sbjct: 322 GY 323
>pdb|3B7W|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a, With L64p Mutation
pdb|3C5E|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Atp
pdb|3DAY|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp-Cpp
pdb|2VZE|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp
pdb|2VZE|B Chain B, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp
pdb|2VZE|C Chain C, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp
pdb|3EQ6|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Ternary Complex With Products
pdb|3EQ6|B Chain B, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Ternary Complex With Products
pdb|3GPC|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Complex With Coa
pdb|3GPC|B Chain B, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Complex With Coa
Length = 570
Score = 35.0 bits (79), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 54/123 (43%), Gaps = 19/123 (15%)
Query: 201 LVGRRNGRIKSGGENVYPEEVEAVLLQHPXXXXXXXXXXANARLTEMVVACVRLRESWQW 260
+GR + I S G + P EVE L++HP + E+V A V L Q+
Sbjct: 451 FMGRADDIINSSGYRIGPSEVENALMEHPAVVETAVISSPDPVRGEVVKAFVVLAS--QF 508
Query: 261 SESNCDQXXXXXXXXXXXXXXRQHCREKNLTG-FKAPRL--FVLWRKPFPLTSTGKIRRD 317
+ +Q +QH K++T +K PR FVL P T TGKI+R
Sbjct: 509 LSHDPEQ---------LTKELQQHV--KSVTAPYKYPRKIEFVL---NLPKTVTGKIQRA 554
Query: 318 EVR 320
++R
Sbjct: 555 KLR 557
>pdb|2WD9|A Chain A, Crystal Structure Of Human Acyl-coa Synthetase
Medium-chain Family Member 2a (l64p Mutation) In Complex
With Ibuprofen
pdb|2WD9|B Chain B, Crystal Structure Of Human Acyl-coa Synthetase
Medium-chain Family Member 2a (l64p Mutation) In Complex
With Ibuprofen
pdb|2WD9|C Chain C, Crystal Structure Of Human Acyl-coa Synthetase
Medium-chain Family Member 2a (l64p Mutation) In Complex
With Ibuprofen
Length = 569
Score = 35.0 bits (79), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 54/123 (43%), Gaps = 19/123 (15%)
Query: 201 LVGRRNGRIKSGGENVYPEEVEAVLLQHPXXXXXXXXXXANARLTEMVVACVRLRESWQW 260
+GR + I S G + P EVE L++HP + E+V A V L Q+
Sbjct: 451 FMGRADDIINSSGYRIGPSEVENALMEHPAVVETAVISSPDPVRGEVVKAFVVLAS--QF 508
Query: 261 SESNCDQXXXXXXXXXXXXXXRQHCREKNLTG-FKAPRL--FVLWRKPFPLTSTGKIRRD 317
+ +Q +QH K++T +K PR FVL P T TGKI+R
Sbjct: 509 LSHDPEQ---------LTKELQQHV--KSVTAPYKYPRKIEFVL---NLPKTVTGKIQRA 554
Query: 318 EVR 320
++R
Sbjct: 555 KLR 557
>pdb|3L8C|A Chain A, Structure Of Probable D-Alanine--Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes
pdb|3L8C|B Chain B, Structure Of Probable D-Alanine--Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes
pdb|3LGX|A Chain A, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
pdb|3LGX|B Chain B, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
pdb|3LGX|C Chain C, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
pdb|3LGX|D Chain D, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
Length = 521
Score = 35.0 bits (79), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 40/165 (24%), Positives = 63/165 (38%), Gaps = 42/165 (25%)
Query: 81 FPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAP 140
FP AK+I+AYG TE + +L+ + + ++ +LP +G P P
Sbjct: 288 FPSAKIINAYGPTEATVALSAIEITREMVDNYTRLP------------------IGYPKP 329
Query: 141 HVELKVCS-DG----SSHVGRILTRGAHVMLRYWDQ----------FLAKPSVSTGEVWL 185
+ DG S G I+ G V Y + F +P+ TG++
Sbjct: 330 DSPTYIIDEDGKELSSGEQGEIIVTGPAVSKGYLNNPEKTAEAFFTFKGQPAYHTGDIG- 388
Query: 186 XXXXXXXXXXXXNVWLV-GRRNGRIKSGGENVYPEEVEAVLLQHP 229
N+ L GR + +IK G + E+V L Q P
Sbjct: 389 -------SLTEDNILLYGGRLDFQIKYAGYRIELEDVSQQLNQSP 426
>pdb|1AMU|A Chain A, Phenylalanine Activating Domain Of Gramicidin Synthetase 1
In A Complex With Amp And Phenylalanine
pdb|1AMU|B Chain B, Phenylalanine Activating Domain Of Gramicidin Synthetase 1
In A Complex With Amp And Phenylalanine
Length = 563
Score = 33.1 bits (74), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 57/249 (22%), Positives = 88/249 (35%), Gaps = 53/249 (21%)
Query: 83 KAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHV 142
K I+AYG TET+ T + T ET G V +G P +
Sbjct: 316 KVTYINAYGPTETTIC---ATTWVATKETIGH-----------------SVPIGAPIQNT 355
Query: 143 ELKVCSDG-----SSHVGRILTRGAHVMLRYW-------DQFLAKPSVSTGEVWLXXXXX 190
++ + + G + G + YW +F+ P V GE
Sbjct: 356 QIYIVDENLQLKSVGEAGELCIGGEGLARGYWKRPELTSQKFVDNPFVP-GEKLYKTGDQ 414
Query: 191 XXXXXXXNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPXXXXXXXXXXANARLTEMVVA 250
N+ +GR + ++K G V EEVE++LL+H + + E
Sbjct: 415 ARWLSDGNIEYLGRIDNQVKIRGHRVELEEVESILLKHMYISETAVSVHKDHQ--EQPYL 472
Query: 251 CVRLRESWQWSESNCDQXXXXXXXXXXXXXXRQHCREKNLTGFKAPRLFVLWRKPFPLTS 310
C ++ SE + RQ E+ L + P F+ K PLTS
Sbjct: 473 C-----AYFVSEKHI-----------PLEQLRQFSSEE-LPTYMIPSYFIQLDK-MPLTS 514
Query: 311 TGKIRRDEV 319
GKI R ++
Sbjct: 515 NGKIDRKQL 523
>pdb|4GR5|A Chain A, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
pdb|4GR5|B Chain B, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
pdb|4GR5|C Chain C, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
pdb|4GR5|D Chain D, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
Length = 570
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 52/218 (23%), Positives = 88/218 (40%), Gaps = 33/218 (15%)
Query: 23 EAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFP 82
E V +H VT L + A L + V + + + V+ + GG + +A P
Sbjct: 297 ELVARHGVTML----QLSASLFNFL-VDEVPEAFEGVRYAITGGEPASVPHVAKARRDHP 351
Query: 83 KAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHV 142
+L + YG E S+ F T + G+++ ++ P GV + +V
Sbjct: 352 ALRLGNGYGPAE---SMGFTTHH----------AVVAGDLSGTAL--PIGVPLAGKRAYV 396
Query: 143 ---ELKVCSDGSSHVGRILTRGAHVMLRY-------WDQFLAKPSVSTGEVWLXXXXXXX 192
+LK ++G+ +G + GA + Y ++F+A P G +
Sbjct: 397 LDDDLKPAANGA--LGELYVAGAGLAHGYVSRPALTAERFVADPFAGPGGERMYRTGDLA 454
Query: 193 XXXXXNVW-LVGRRNGRIKSGGENVYPEEVEAVLLQHP 229
V VGR + ++K G V P EVEA L+ HP
Sbjct: 455 RRRADGVLEYVGRADDQVKIRGFRVEPGEVEARLVGHP 492
>pdb|4E8B|A Chain A, Crystal Structure Of 16s Rrna Methyltransferase Rsme From
E.Coli
Length = 251
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 10/30 (33%), Positives = 18/30 (60%)
Query: 141 HVELKVCSDGSSHVGRILTRGAHVMLRYWD 170
H + +C D ++H+GR+L G L+ +D
Sbjct: 15 HSHIALCEDAANHIGRVLRMGPGQALQLFD 44
>pdb|3NSW|A Chain A, Crystal Structure Of Ancylostoma Ceylanicum
Excretory-Secretory Protein 2
pdb|3NSW|B Chain B, Crystal Structure Of Ancylostoma Ceylanicum
Excretory-Secretory Protein 2
pdb|3NSW|C Chain C, Crystal Structure Of Ancylostoma Ceylanicum
Excretory-Secretory Protein 2
pdb|3NSW|D Chain D, Crystal Structure Of Ancylostoma Ceylanicum
Excretory-Secretory Protein 2
pdb|3NSW|E Chain E, Crystal Structure Of Ancylostoma Ceylanicum
Excretory-Secretory Protein 2
pdb|3NSW|F Chain F, Crystal Structure Of Ancylostoma Ceylanicum
Excretory-Secretory Protein 2
pdb|3NSW|G Chain G, Crystal Structure Of Ancylostoma Ceylanicum
Excretory-Secretory Protein 2
Length = 106
Score = 29.3 bits (64), Expect = 3.4, Method: Composition-based stats.
Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Query: 71 SELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNV 122
SE+ +E N ++ G T S +L + LYD P Q P +FG +
Sbjct: 12 SEIRQEDINDVETVAYVTVTGKTARSYNLQYWRLYDVPKTAPSQWP-SFGTL 62
>pdb|3HCE|A Chain A, Crystal Structure Of E185d Hpnmt In Complex With
Octopamine And Adohcy
pdb|3HCE|B Chain B, Crystal Structure Of E185d Hpnmt In Complex With
Octopamine And Adohcy
Length = 289
Score = 27.7 bits (60), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 27/68 (39%), Gaps = 15/68 (22%)
Query: 114 QLPQAFGNVTPNSVHQPQGVCVGKPAP----HVELKVCSDGSS-----------HVGRIL 158
QL V P VHQPQ + G PAP + C D S H+ +L
Sbjct: 146 QLRARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLDAVSPDLASFQRALDHITTLL 205
Query: 159 TRGAHVML 166
G H++L
Sbjct: 206 RPGGHLLL 213
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.133 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,024,174
Number of Sequences: 62578
Number of extensions: 320714
Number of successful extensions: 697
Number of sequences better than 100.0: 46
Number of HSP's better than 100.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 617
Number of HSP's gapped (non-prelim): 50
length of query: 334
length of database: 14,973,337
effective HSP length: 99
effective length of query: 235
effective length of database: 8,778,115
effective search space: 2062857025
effective search space used: 2062857025
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)