Query 019921
Match_columns 334
No_of_seqs 128 out of 1779
Neff 10.0
Searched_HMMs 29240
Date Mon Mar 25 09:05:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019921.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019921hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ni2_A 4-coumarate:COA ligase; 100.0 1.9E-52 6.6E-57 397.7 23.7 286 2-325 244-535 (536)
2 1mdb_A 2,3-dihydroxybenzoate-A 100.0 1.8E-52 6.2E-57 398.1 22.8 289 2-333 245-539 (539)
3 2d1s_A Luciferase, luciferin 4 100.0 1.3E-51 4.5E-56 392.8 23.9 282 6-330 260-548 (548)
4 4fuq_A Malonyl COA synthetase; 100.0 5.1E-51 1.8E-55 385.0 23.3 279 3-327 218-502 (503)
5 3etc_A AMP-binding protein; ad 100.0 6.6E-51 2.3E-55 390.1 20.3 282 2-326 287-580 (580)
6 1pg4_A Acetyl-COA synthetase; 100.0 2.7E-50 9.2E-55 390.9 24.1 291 2-329 319-625 (652)
7 1t5h_X 4-chlorobenzoyl COA lig 100.0 1.4E-49 4.6E-54 375.5 24.7 278 2-324 217-503 (504)
8 3rix_A Luciferase, luciferin 4 100.0 1.9E-51 6.5E-56 392.1 12.0 289 2-333 254-549 (550)
9 3r44_A Fatty acyl COA syntheta 100.0 1.1E-49 3.7E-54 377.1 23.8 280 4-328 233-516 (517)
10 3g7s_A Long-chain-fatty-acid-- 100.0 8.6E-50 2.9E-54 380.6 20.2 287 2-326 241-543 (549)
11 3ipl_A 2-succinylbenzoate--COA 100.0 2.6E-49 9E-54 373.4 21.6 275 2-326 224-498 (501)
12 3e7w_A D-alanine--poly(phospho 100.0 2E-49 6.8E-54 375.0 20.5 290 2-326 204-504 (511)
13 3fce_A D-alanine--poly(phospho 100.0 1.2E-49 4E-54 376.7 18.2 292 2-328 205-507 (512)
14 1v25_A Long-chain-fatty-acid-C 100.0 3.6E-50 1.2E-54 382.5 14.5 294 2-329 239-540 (541)
15 3nyq_A Malonyl-COA ligase; A/B 100.0 2.2E-49 7.5E-54 373.9 18.8 278 2-321 217-504 (505)
16 3rg2_A Enterobactin synthase c 100.0 1.2E-48 4E-53 377.5 23.6 286 2-329 247-538 (617)
17 1ry2_A Acetyl-coenzyme A synth 100.0 3.3E-49 1.1E-53 383.6 18.6 299 2-328 325-640 (663)
18 3c5e_A Acyl-coenzyme A synthet 100.0 1E-48 3.6E-53 374.3 21.0 286 2-328 268-565 (570)
19 3o83_A Peptide arylation enzym 100.0 1.2E-50 4.1E-55 386.0 7.3 282 2-326 254-541 (544)
20 3l8c_A D-alanine--poly(phospho 100.0 3.8E-49 1.3E-53 374.0 16.6 296 3-329 209-516 (521)
21 3tsy_A Fusion protein 4-coumar 100.0 1.3E-49 4.6E-54 402.4 13.1 294 2-333 291-590 (979)
22 4gr5_A Non-ribosomal peptide s 100.0 1.1E-49 3.6E-54 381.5 11.4 280 2-322 274-568 (570)
23 1amu_A GRSA, gramicidin synthe 100.0 3.2E-48 1.1E-52 370.4 17.6 271 2-323 243-527 (563)
24 4dg8_A PA1221; ANL superfamily 100.0 8.7E-48 3E-52 370.7 19.5 278 2-328 224-516 (620)
25 2v7b_A Benzoate-coenzyme A lig 100.0 2.4E-47 8.3E-52 362.2 19.7 277 2-321 246-528 (529)
26 3ivr_A Putative long-chain-fat 100.0 9.5E-48 3.2E-52 363.4 8.6 276 4-329 223-505 (509)
27 2vsq_A Surfactin synthetase su 100.0 8.4E-46 2.9E-50 383.7 18.1 282 2-327 667-962 (1304)
28 3ite_A SIDN siderophore synthe 100.0 6.4E-46 2.2E-50 354.9 10.1 291 2-326 244-544 (562)
29 3gqw_A Fatty acid AMP ligase; 100.0 1.9E-44 6.7E-49 345.7 13.9 310 3-333 240-571 (576)
30 3kxw_A Saframycin MX1 syntheta 100.0 3.2E-44 1.1E-48 345.2 13.2 306 2-326 229-568 (590)
31 4gs5_A Acyl-COA synthetase (AM 100.0 5.4E-43 1.8E-47 316.0 15.1 256 2-328 98-357 (358)
32 3qov_A Phenylacetate-coenzyme 100.0 3.9E-40 1.3E-44 305.4 21.7 262 2-318 151-430 (436)
33 2y4o_A Phenylacetate-coenzyme 100.0 2.2E-40 7.6E-45 307.7 17.8 267 3-321 158-440 (443)
34 2y27_A Phenylacetate-coenzyme 100.0 2.1E-39 7.1E-44 300.6 19.1 264 2-318 155-432 (437)
35 3t5a_A Long-chain-fatty-acid-- 100.0 6.6E-29 2.2E-33 232.7 8.3 200 2-204 251-480 (480)
36 3hgu_A EHPF; phenazine, antibi 99.8 8.9E-20 3E-24 165.0 7.4 167 3-214 157-368 (369)
37 3lax_A Phenylacetate-coenzyme 99.6 2.9E-15 1E-19 110.8 10.9 100 203-316 1-101 (109)
38 3gxs_A Phenylacetate-coenzyme 99.6 5E-15 1.7E-19 109.4 8.6 101 203-317 1-102 (109)
39 4eql_A 4-substituted benzoates 98.4 2.7E-06 9.2E-11 79.9 11.9 61 151-228 383-447 (581)
40 4epl_A Jasmonic acid-amido syn 98.2 5.3E-05 1.8E-09 71.1 17.6 71 151-238 390-472 (581)
41 4b2g_A GH3-1 auxin conjugating 98.1 8.2E-06 2.8E-10 76.8 8.8 60 151-227 395-458 (609)
42 3ezx_A MMCP 1, monomethylamine 69.7 19 0.00065 28.9 7.8 67 6-76 119-194 (215)
43 1yj7_A ESCJ; mixed alpha/beta, 36.4 1.4E+02 0.0049 22.8 7.4 71 218-301 92-162 (171)
44 1n0w_B Breast cancer type 2 su 28.5 8.1 0.00028 20.6 -0.7 24 308-333 9-32 (35)
45 1y80_A Predicted cobalamin bin 24.5 2.5E+02 0.0085 21.8 8.0 65 6-74 115-186 (210)
No 1
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=100.00 E-value=1.9e-52 Score=397.73 Aligned_cols=286 Identities=29% Similarity=0.424 Sum_probs=249.8
Q ss_pred ceeeccceEEEcCCCCHHHHHHHHHhhcceEEEechHHHHHHHHHHhhccccCCCCCccEEEeccCCCCHHHHHHHHhhC
Q 019921 2 AMLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSF 81 (334)
Q Consensus 2 ~~l~~G~~~v~~~~~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~ 81 (334)
.++..|+++++.+.+++..+++.++++++|++.++|+++..+++...... ..+++||.+++||+++++++.+++++.|
T Consensus 244 ~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~--~~l~~lr~i~~gGe~l~~~~~~~~~~~~ 321 (536)
T 3ni2_A 244 CGLRVGAPILIMPKFEIGSLLGLIEKYKVSIAPVVPPVMMSIAKSPDLDK--HDLSSLRMIKSGGAPLGKELEDTVRAKF 321 (536)
T ss_dssp HHHHHTCCEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTCSCGGG--SCCTTCCEEEEESSCCCHHHHHHHHHHC
T ss_pred HHHhcCCEEEEcCCCCHHHHHHHHHHhCCeEEEccHHHHHHHHhCccccc--CCCccceEEEECCCCCCHHHHHHHHHHC
Confidence 35778999999999999999999999999999999999999887654333 3588999999999999999999999999
Q ss_pred CCCceEcccccccccccccccccCCCCCCCCCCCCCcccCCCCCCCCCCCceeeccccCcceEEEeeCC------CCcee
Q 019921 82 PKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG------SSHVG 155 (334)
Q Consensus 82 ~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~~~~------~g~~G 155 (334)
|++++++.||+||++.+++.+........ ....+++|.|+++++++++|++ .|+.|
T Consensus 322 ~~~~l~~~YG~TE~~~~~~~~~~~~~~~~------------------~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~G 383 (536)
T 3ni2_A 322 PQARLGQGYGMTEAGPVLAMCLAFAKEPF------------------DIKPGACGTVVRNAEMKIVDPETGASLPRNQPG 383 (536)
T ss_dssp TTSEEEEEEECGGGSSEEEECGGGSSSCC------------------CCCTTCCCEECSSCEEEEECTTTCCBCCTTCCE
T ss_pred CCCCccccccccccchhhhcccccCCccc------------------cCCCCCeeEeCCCcEEEEEeCCCCcCCCCCCcc
Confidence 99999999999999976554432211100 0134469999999999999954 57889
Q ss_pred EEEEcCcchhhhhhhcccCCCCccCCCceEeccceEEEcCCCcEEEeeccCceeeeCceeeChHHHHHHHhcCCCcceEE
Q 019921 156 RILTRGAHVMLRYWDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIV 235 (334)
Q Consensus 156 el~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~ 235 (334)
||+|+|++++.||+++++.+...|+.++||+|||+|++++||+++++||.||+||++|++|+|.+||++|.+||+|.+++
T Consensus 384 El~v~g~~v~~GY~~~p~~t~~~~~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~ 463 (536)
T 3ni2_A 384 EICIRGDQIMKGYLNDPEATSRTIDKEGWLHTGDIGYIDDDDELFIVDRLKELIKYKGFQVAPAELEALLIAHPEISDAA 463 (536)
T ss_dssp EEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEECSCCEEETTEEECHHHHHHHHHTSTTEEEEE
T ss_pred EEEEeCcccchhhcCChhHHHhhccCCCceEcccEEEEcCCceEEEEecccceEEECCEEECHHHHHHHHHhCCCcceEE
Confidence 99999999999999999999999988999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCcceeEEEEEEEeccCccccccccccccchhhhhccHHHHHHHHHhcCCCCcccceEEEeccCCccCCCCCccc
Q 019921 236 VVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIR 315 (334)
Q Consensus 236 v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GKv~ 315 (334)
|++++++..++.++++|+..+. ...+.+++++++++ .++.|++|+.++++ ++||+|++|||+
T Consensus 464 Vv~~~~~~~g~~~~a~vv~~~~----------------~~~~~~~l~~~l~~-~l~~~~~p~~i~~v-~~lP~t~~GKi~ 525 (536)
T 3ni2_A 464 VVGLKDEDAGEVPVAFVVKSEK----------------SQATEDEIKQYISK-QVIFYKRIKRVFFI-EAIPKAPSGKIL 525 (536)
T ss_dssp EEEEEETTTEEEEEEEEEECTT----------------CCCCHHHHHHHHHT-TSCGGGCCSEEEEC-SCCCBCTTSCBC
T ss_pred EEeeecCCCCceeEEEEEecCC----------------CCCCHHHHHHHHHH-hccCCccccEEEEE-ecCCCCCCCCee
Confidence 9999999889999999987764 12557889999999 79999999998775 889999999999
Q ss_pred hHHHHHHHHh
Q 019921 316 RDEVRREVMS 325 (334)
Q Consensus 316 r~~l~~~~~~ 325 (334)
|++|++++.+
T Consensus 526 R~~L~~~~~~ 535 (536)
T 3ni2_A 526 RKNLKEKLAG 535 (536)
T ss_dssp HHHHHTC---
T ss_pred HHHHHHHhcc
Confidence 9999987753
No 2
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=100.00 E-value=1.8e-52 Score=398.11 Aligned_cols=289 Identities=25% Similarity=0.370 Sum_probs=250.8
Q ss_pred ceeeccceEEEcCCCCHHHHHHHHHhhcceEEEechHHHHHHHHHHhhccccCCCCCccEEEeccCCCCHHHHHHHHhhC
Q 019921 2 AMLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSF 81 (334)
Q Consensus 2 ~~l~~G~~~v~~~~~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~ 81 (334)
.+|+.|+++++.+.+++..+++.++++++|+++++|+++..+++....... .+++||.+++||+++++++.+++.+.|
T Consensus 245 ~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~--~l~~lr~~~~gG~~l~~~~~~~~~~~~ 322 (539)
T 1mdb_A 245 GVLYAGGRVVLSPSPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRRD--DLSSLQVLQVGGAKFSAEAARRVKAVF 322 (539)
T ss_dssp HHHHTTCEEEECSSSSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHCCC--CCTTCCEEEEESSCCCHHHHTTHHHHT
T ss_pred HHHHhCCEEEECCCCCHHHHHHHHHHcCCeEEEccHHHHHHHHhCccccCC--CccceeEEEEcCCCCCHHHHHHHHHHh
Confidence 467899999999999999999999999999999999999999887654332 578999999999999999999999999
Q ss_pred CCCceEcccccccccccccccccCCCCCCCCCCCCCcccCCCCCCCCCCCceeeccccCc-ceEEEeeCC-----CCcee
Q 019921 82 PKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPH-VELKVCSDG-----SSHVG 155 (334)
Q Consensus 82 ~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~-~~~~i~~~~-----~g~~G 155 (334)
++++++.||+||++..++. ..... .....++|+|+++ .+++++|++ .|+.|
T Consensus 323 -~~~~~~~YG~TE~~~~~~~--~~~~~--------------------~~~~~~~G~p~~~~~~~~i~d~~~~~~~~g~~G 379 (539)
T 1mdb_A 323 -GCTLQQVFGMAEGLVNYTR--LDDPE--------------------EIIVNTQGKPMSPYDESRVWDDHDRDVKPGETG 379 (539)
T ss_dssp -CSEEEEEEECTTSCEEECC--TTSCH--------------------HHHHHCCCEESSTTCEEEEECTTSCBCCTTCCE
T ss_pred -CCcEEEEEcCCCCcccccC--CCCcH--------------------HhcCCCCCcccCCCceEEEECCCCCCCcCCCcc
Confidence 8999999999996533221 11100 0023469999975 579999875 57889
Q ss_pred EEEEcCcchhhhhhhcccCCCCccCCCceEeccceEEEcCCCcEEEeeccCceeeeCceeeChHHHHHHHhcCCCcceEE
Q 019921 156 RILTRGAHVMLRYWDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIV 235 (334)
Q Consensus 156 el~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~ 235 (334)
||+|+|++++.||+++++.+...|..++||+|||+|++++||+++|.||.||+||++|++|+|.+||++|.+||+|.+++
T Consensus 380 El~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~ 459 (539)
T 1mdb_A 380 HLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTRDGYIVVEGRAKDQINRGGEKVAAEEVENHLLAHPAVHDAA 459 (539)
T ss_dssp EEEEECTTSCSSCTTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEEGGGCEECSSCEECHHHHHHHHTTSTTEEEEE
T ss_pred eEEeeCcccchhhcCChhhhhhhccCCCCeecCceEEECCCCcEEEeccccceEEECCEEECHHHHHHHHHhCCCcceEE
Confidence 99999999999999999999888888999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCcceeEEEEEEEeccCccccccccccccchhhhhccHHHHHHHHHhcCCCCcccceEEEeccCCccCCCCCccc
Q 019921 236 VVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIR 315 (334)
Q Consensus 236 v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GKv~ 315 (334)
|++.+++..++.++++|+++.. ..+.+++++++++..++.|++|+.++++ ++||+|++||++
T Consensus 460 vv~~~~~~~g~~~~a~vv~~~~-----------------~~~~~~l~~~l~~~~L~~~~~P~~i~~v-~~lP~t~~GKi~ 521 (539)
T 1mdb_A 460 MVSMPDQFLGERSCVFIIPRDE-----------------APKAAELKAFLRERGLAAYKIPDRVEFV-ESFPQTGVGKVS 521 (539)
T ss_dssp EEEEEETTTEEEEEEEEEESSS-----------------CCCHHHHHHHHHHTTCCGGGSCSEEEEC-SSCCBCTTSCBC
T ss_pred EEeccccccCceEEEEEEECCC-----------------CCCHHHHHHHHHhCCCCcccCCCEEEEe-ccCCCCCCcCEe
Confidence 9999998888899999987642 2456889999999339999999998875 789999999999
Q ss_pred hHHHHHHHHhhcccCCCC
Q 019921 316 RDEVRREVMSHLKSLPSN 333 (334)
Q Consensus 316 r~~l~~~~~~~~~~l~~~ 333 (334)
|++|++++.++|+++|+.
T Consensus 522 r~~L~~~~~~~i~~~y~~ 539 (539)
T 1mdb_A 522 KKALREAISEKLLAGFKK 539 (539)
T ss_dssp HHHHHHHHHHHHHTC---
T ss_pred HHHHHHHHHHHHhccccC
Confidence 999999999999999973
No 3
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=100.00 E-value=1.3e-51 Score=392.85 Aligned_cols=282 Identities=27% Similarity=0.361 Sum_probs=247.8
Q ss_pred ccceEEEcCCCCHHHHHHHHHhhcceEEEechHHHHHHHHHHhhccccCCCCCccEEEeccCCCCHHHHHHHHhhCCCCc
Q 019921 6 VGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFPKAK 85 (334)
Q Consensus 6 ~G~~~v~~~~~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~~ 85 (334)
.|+++++.+.+++..+++.|+++++|+++++|+++..|.+...... ..+++||.+++||+++++++.+++.+.|++++
T Consensus 260 ~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~--~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~ 337 (548)
T 2d1s_A 260 CGFRVVMLTKFDEETFLKTLQDYKCTSVILVPTLFAILNKSELLNK--YDLSNLVEIASGGAPLSKEVGEAVARRFNLPG 337 (548)
T ss_dssp TTCEEEECCCCCHHHHHHHHHHTTEEEEEECHHHHHHHHHCSCGGG--SCCTTCCEEEECSSCCCHHHHHHHHHHTTCSC
T ss_pred cCcEEEEcCCCCHHHHHHHHHHcCCcEEEecHHHHHHHHhCccccc--ccccceeEEEEcCccCCHHHHHHHHHHcCCCc
Confidence 8999999999999999999999999999999999999887543322 25789999999999999999999999998889
Q ss_pred eEcccccccccccccccccCCCCCCCCCCCCCcccCCCCCCCCCCCceeeccccCcceEEEeeCC------CCceeEEEE
Q 019921 86 LISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG------SSHVGRILT 159 (334)
Q Consensus 86 ~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~~~~------~g~~Gel~v 159 (334)
+++.||+||++..++...... ...+++|.|+|+++++++|++ .|+.|||++
T Consensus 338 i~~~YG~TE~~~~~~~~~~~~-----------------------~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~GEl~v 394 (548)
T 2d1s_A 338 VRQGYGLTETTSAIIITPEGD-----------------------DKPGASGKVVPLFKAKVIDLDTKKSLGPNRRGEVCV 394 (548)
T ss_dssp CEEEEECGGGSSEEEECCTTC-----------------------CCTTCCBEECTTCEEEEECTTTCCBCCTTCCEEEEE
T ss_pred eeeccccccccceeeecCccc-----------------------CCCCCCCccCCCceEEEEeCCcCccCCCCCCeEEEE
Confidence 999999999987655421110 033469999999999999843 578899999
Q ss_pred cCcchhhhhhhcccCCCCccCCCceEeccceEEEcCCCcEEEeeccCceeeeCceeeChHHHHHHHhcCCCcceEEEEEE
Q 019921 160 RGAHVMLRYWDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGI 239 (334)
Q Consensus 160 ~g~~~~~gy~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~ 239 (334)
+|++++.||+++++.+...|+.++||+|||+|++++||+++++||.||+||++|++|+|.+||++|.+||+|.+++|++.
T Consensus 395 ~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDl~~~~~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~V~~~ 474 (548)
T 2d1s_A 395 KGPMLMKGYVNNPEATKELIDEEGWLHTGDIGYYDEEKHFFIVDRLKSLIKYKGYQVPPAELESVLLQHPSIFDAGVAGV 474 (548)
T ss_dssp ESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTCCEEEEEEGGGCBCBTTCCBCHHHHHHHHHTSTTEEEEEEEEE
T ss_pred CCHHHhhhhcCChHHhhhcccCCcEEEccCEEEEcCCCeEEEeccccceEEECCEEECHHHHHHHHHhCCCccEEEEEEE
Confidence 99999999999999988888889999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCcceeEEEEEEEeccCccccccccccccchhhhhccHHHHHHHHHhcCCCCcccce-EEEeccCCccCCCCCccchHH
Q 019921 240 ANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPR-LFVLWRKPFPLTSTGKIRRDE 318 (334)
Q Consensus 240 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~-~~~~~~~~lP~t~~GKv~r~~ 318 (334)
+++..++.++++|++.++ ...+.+++++++++ .++.|++|+ .+.++ ++||+|++||++|++
T Consensus 475 ~~~~~g~~~~a~vv~~~~----------------~~~~~~~l~~~~~~-~l~~~~~p~~~i~~v-~~lP~t~~GKi~r~~ 536 (548)
T 2d1s_A 475 PDPVAGELPGAVVVLESG----------------KNMTEKEVMDYVAS-QVSNAKRLRGGVRFV-DEVPKGLTGKIDGRA 536 (548)
T ss_dssp EETTTEEEEEEEEEECTT----------------CCCCHHHHHHHHHT-TSCGGGSCTTCEEEC-SSCCBCTTSCBCHHH
T ss_pred EcCCCCeeeEEEEEEcCC----------------CCCCHHHHHHHHHH-hccccccccccEEEc-cCCCCCCcchhHHHH
Confidence 998888999999988764 12456889999999 799999999 77665 889999999999999
Q ss_pred HHHHHHhhcccC
Q 019921 319 VRREVMSHLKSL 330 (334)
Q Consensus 319 l~~~~~~~~~~l 330 (334)
|++++.+.|+++
T Consensus 537 L~~~~~~~i~~~ 548 (548)
T 2d1s_A 537 IREILKKPVAKM 548 (548)
T ss_dssp HHHHHHSCC---
T ss_pred HHHHHhhhhhcC
Confidence 999999988764
No 4
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=100.00 E-value=5.1e-51 Score=385.00 Aligned_cols=279 Identities=25% Similarity=0.409 Sum_probs=246.3
Q ss_pred eeeccceEEEcCCCCHHHHHHHHHhhcceEEEechHHHHHHHHHHhhccccCCCCCccEEEeccCCCCHHHHHHHHhhCC
Q 019921 3 MLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFP 82 (334)
Q Consensus 3 ~l~~G~~~v~~~~~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~ 82 (334)
+++.|+++++.+.+++..+++.++ ++|+++++|+++..+++...... ..++++|.+++||+++++++.+.+.+.+
T Consensus 218 ~l~~g~~~~~~~~~~~~~~~~~i~--~~t~~~~~P~~~~~l~~~~~~~~--~~~~~lr~~~~gg~~l~~~~~~~~~~~~- 292 (503)
T 4fuq_A 218 TLFARGSMIFLPKFDPDKILDLMA--RATVLMGVPTFYTRLLQSPRLTK--ETTGHMRLFISGSAPLLADTHREWSAKT- 292 (503)
T ss_dssp HHHTTCEEEECSSCCHHHHHHHHT--TCCEEEECHHHHHHHHTCTTCST--TTTTTCCEEEECSSCCCHHHHHHHHHHH-
T ss_pred HHHhCCEEEEcCCCCHHHHHHHHh--hcCEEEEHHHHHHHHHhCCCccc--cchhhcEEEEECCCCCCHHHHHHHHHHh-
Confidence 567899999999999999999998 89999999999999887654332 2578999999999999999999999998
Q ss_pred CCceEcccccccccccccccccCCCCCCCCCCCCCcccCCCCCCCCCCCceeeccccCcceEEEeeCC------CCceeE
Q 019921 83 KAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG------SSHVGR 156 (334)
Q Consensus 83 ~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~~~~------~g~~Ge 156 (334)
++++++.||+||++...+..... . ...+++|.|+|+++++++|++ .|+.||
T Consensus 293 ~~~~~~~YG~TE~~~~~~~~~~~-~----------------------~~~~~~G~p~~~~~~~i~d~~~g~~~~~g~~GE 349 (503)
T 4fuq_A 293 GHAVLERYGMTETNMNTSNPYDG-D----------------------RVPGAVGPALPGVSARVTDPETGKELPRGDIGM 349 (503)
T ss_dssp SCCEEECCEETTTEECBCCCSSS-C----------------------CCTTEEEEBCTTCEEEEECTTTCCBCCTTCCEE
T ss_pred CCCccceEcccccCcccccCCCC-C----------------------CcCCccccCCCCeEEEEEECCCCCCCcCCCceE
Confidence 89999999999998654321110 0 134479999999999999944 678899
Q ss_pred EEEcCcchhhhhhhcccCCCCccCCCceEeccceEEEcCCCcEEEeeccCceeeeCceeeChHHHHHHHhcCCCcceEEE
Q 019921 157 ILTRGAHVMLRYWDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVV 236 (334)
Q Consensus 157 l~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v 236 (334)
|+|+|++++.||+++++.+...|..++||+|||+|++++||+++++||.||+||++|++|+|.+||++|.+||+|.+++|
T Consensus 350 l~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~v 429 (503)
T 4fuq_A 350 IEVKGPNVFKGYWRMPEKTKSEFRDDGFFITGDLGKIDERGYVHILGRGKDLVITGGFNVYPKEIESEIDAMPGVVESAV 429 (503)
T ss_dssp EEEESTTSCCCBTTCHHHHHHTBCTTSCEEEEEEEEECTTCEEEECCSSTTCEEETTEEECHHHHHHHHHTSTTEEEEEE
T ss_pred EEEECCchhhhhcCChhhhHhhhCCCCCeEcceeEEEcCCCcEEEEecCCCEEEECCEEECHHHHHHHHHhCCCeeEEEE
Confidence 99999999999999999999999889999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCcceeEEEEEEEeccCccccccccccccchhhhhccHHHHHHHHHhcCCCCcccceEEEeccCCccCCCCCccch
Q 019921 237 VGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRR 316 (334)
Q Consensus 237 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GKv~r 316 (334)
++++++..++.++++|++.++ ...+.+++++++++ .++.|++|+.++++ ++||+|++||++|
T Consensus 430 v~~~~~~~~~~~~a~v~~~~~----------------~~~~~~~l~~~l~~-~L~~~~~P~~i~~v-~~lP~t~~GKi~R 491 (503)
T 4fuq_A 430 IGVPHADFGEGVTAVVVRDKG----------------ATIDEAQVLHGLDG-QLAKFKMPKKVIFV-DDLPRNTMGKVQK 491 (503)
T ss_dssp EEEEETTTEEEEEEEEEECTT----------------CCCCHHHHHHHHBT-TBCGGGCCSEEEEE-SCCCBCTTSCBCH
T ss_pred EEeEchhcCceeEEEEEeCCC----------------CCCCHHHHHHHHHh-hcccCCCCCEEEEE-CCCCCCcccceeH
Confidence 999999889999999998765 12456889999999 79999999998875 7899999999999
Q ss_pred HHHHHHHHhhc
Q 019921 317 DEVRREVMSHL 327 (334)
Q Consensus 317 ~~l~~~~~~~~ 327 (334)
++|++++.+..
T Consensus 492 ~~L~~~~~~~~ 502 (503)
T 4fuq_A 492 NVLRETYKDIY 502 (503)
T ss_dssp HHHHHHTTTTT
T ss_pred HHHHHHHHHhh
Confidence 99999987654
No 5
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=100.00 E-value=6.6e-51 Score=390.11 Aligned_cols=282 Identities=24% Similarity=0.396 Sum_probs=225.2
Q ss_pred ceeeccceEEEc--CCCCHHHHHHHHHhhcceEEEechHHHHHHHHHHhhccccCCCCCccEEEeccCCCCHHHHHHHHh
Q 019921 2 AMLMVGACHVFI--PKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATN 79 (334)
Q Consensus 2 ~~l~~G~~~v~~--~~~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~ 79 (334)
.++..|+++++. +.+++..+++.++++++|+++++|++++.|.+. .....++++||.+++||++++++++++|.+
T Consensus 287 ~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~---~~~~~~l~~lr~i~~gGe~l~~~~~~~~~~ 363 (580)
T 3etc_A 287 GQWIAGCAVFVYDYDRFEAKNMLEKASKYGVTTFCAPPTIYRFLIKE---DLSHYNFSTLKYAVVAGEPLNPEVFNRFLE 363 (580)
T ss_dssp HHHHTTCEEEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTS---CC---CCTTCCEEEECSSCCCHHHHHHHHH
T ss_pred HHHhCCcEEEEecCCCCCHHHHHHHHHHHCCeEEEccHHHHHHHHhc---ccccCCCccceEEEEccCCCCHHHHHHHHH
Confidence 356789999887 469999999999999999999999999988764 222235789999999999999999999999
Q ss_pred hCCCCceEcccccccccccccccccCCCCCCCCCCCCCcccCCCCCCCCCCCceeeccccCcceEEEeeCC-----CCce
Q 019921 80 SFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG-----SSHV 154 (334)
Q Consensus 80 ~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~~~~-----~g~~ 154 (334)
.+ ++++++.||+||++..++....... .++++|+|+|+++++|+|++ .|+.
T Consensus 364 ~~-g~~i~~~YG~TE~~~~~~~~~~~~~-----------------------~~~~~G~p~~~~~v~ivd~~g~~~~~g~~ 419 (580)
T 3etc_A 364 FT-GIKLMEGFGQTETVVTIATFPWMEP-----------------------KPGSIGKPTPGYKIELMDRDGRLCEVGEE 419 (580)
T ss_dssp HH-SCCCEEEECCTTSSCCEECCTTSCC-----------------------CTTCCBEECTTCEEEEECTTSCBCCTTCC
T ss_pred Hh-CCeEecccccccccceeecCCCCCC-----------------------CCCccccCCCCCEEEEECCCCCCCCCCCc
Confidence 88 8999999999999865544322111 33469999999999999976 5789
Q ss_pred eEEEEcC-----cchhhhhhhcccCCCCccCCCceEeccceEEEcCCCcEEEeeccCceeeeCceeeChHHHHHHHhcCC
Q 019921 155 GRILTRG-----AHVMLRYWDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHP 229 (334)
Q Consensus 155 Gel~v~g-----~~~~~gy~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~ 229 (334)
|||+|+| +.++.||+++++.+...| .+|||+|||+|++++||+++|+||.||+||++|++|+|.+||++|.+||
T Consensus 420 GEl~v~~~~g~~~~~~~gY~~~p~~t~~~f-~~gwy~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~I~p~eIE~~l~~~p 498 (580)
T 3etc_A 420 GEIVINTMEGKPVGLFVHYGKDPERTEETW-HDGYYHTGDMAWMDEDGYLWFVGRADDIIKTSGYKVGPFEVESALIQHP 498 (580)
T ss_dssp EEEEEECTTCCCTTCCCEETTCHHHHHHHE-ETTEEEEEEEEEECTTSCEEEEEESSSCEEETTEEECHHHHHHHHTTST
T ss_pred eEEEEecCCCCCCeeeccccCCHhHHHhhc-CCCEEecCcEEEECCCCcEEEEecCCCEEEECCEEECHHHHHHHHHhCC
Confidence 9999997 789999999999998888 4789999999999999999999999999999999999999999999999
Q ss_pred CcceEEEEEEecCcceeEEEEEEEeccCccccccccccccchhhhhccHHHHHHHHHhcCCCCcccceEEEeccCCccCC
Q 019921 230 GIIGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLT 309 (334)
Q Consensus 230 ~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t 309 (334)
.|.+++|++++++..++.+.++|++.++.... ....++|++++++ .++.|++|+.++++ ++||+|
T Consensus 499 ~V~~a~Vvg~~~~~~g~~~~a~vv~~~~~~~~-------------~~~~~~l~~~l~~-~l~~~~~P~~i~~v-~~lP~t 563 (580)
T 3etc_A 499 AVLECAITGVPDPVRGQVIKATIVLTKDYTPS-------------DSLKNELQDHVKN-VTAPYKYPRIIEFV-PELPKT 563 (580)
T ss_dssp TEEEEEEEEEEETTTEEEEEEEEEECTTCCCC-------------HHHHHHHHHHHHH-HSCGGGCCSEEEEE-CC----
T ss_pred CeeeEEEEeeeccCCCcEEEEEEEECCCCCCC-------------HHHHHHHHHHHHh-hCCCccCCeEEEEe-CCCCCC
Confidence 99999999999999999999999988762211 1345789999999 79999999998775 789999
Q ss_pred CCCccchHHHHHHHHhh
Q 019921 310 STGKIRRDEVRREVMSH 326 (334)
Q Consensus 310 ~~GKv~r~~l~~~~~~~ 326 (334)
++|||+|++|++++.++
T Consensus 564 ~sGKi~R~~Lr~~~~~q 580 (580)
T 3etc_A 564 ISGKIRRVEIRDKDQSQ 580 (580)
T ss_dssp -----------------
T ss_pred CCcCCcHHHHHhHhhcC
Confidence 99999999999987653
No 6
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=100.00 E-value=2.7e-50 Score=390.87 Aligned_cols=291 Identities=18% Similarity=0.190 Sum_probs=246.2
Q ss_pred ceeeccceEEEcCC----CCHHHHHHHHHhhcceEEEechHHHHHHHHHHhhccccCCCCCccEEEeccCCCCHHHHHHH
Q 019921 2 AMLMVGACHVFIPK----FESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEA 77 (334)
Q Consensus 2 ~~l~~G~~~v~~~~----~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~ 77 (334)
++|++|++++++++ +++..+++.++++++|+++++|++++.|.+.........++++||.+++||+++++++++++
T Consensus 319 ~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~sLr~i~~gGe~l~~~~~~~~ 398 (652)
T 1pg4_A 319 GPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWY 398 (652)
T ss_dssp HHHHTTCEEEEECSCTTSSSTTHHHHHHHHHTCSEEEECHHHHHHHHTTGGGGTTTCCCTTCCEEEEESSCCCHHHHHHH
T ss_pred HHHHcCceEEEECCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcCccccccCCcCceEEEEEecCCCCHHHHHHH
Confidence 56889999999875 58999999999999999999999999998765432223357899999999999999999999
Q ss_pred HhhCCC---CceEcccccccccccccccccCCCCCCCCCCCCCcccCCCCCCCCCCCceeeccccCcceEEEeeCC----
Q 019921 78 TNSFPK---AKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG---- 150 (334)
Q Consensus 78 ~~~~~~---~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~~~~---- 150 (334)
.+.+ + +++++.||+||+++.++........ ...+++|+|+++++++|+|++
T Consensus 399 ~~~~-g~~~~~i~~~YG~TE~~~~~~~~~~~~~~---------------------~~~~s~G~p~~g~~v~i~d~~g~~v 456 (652)
T 1pg4_A 399 WKKI-GKEKCPVVDTWWQTETGGFMITPLPGAIE---------------------LKAGSATRPFFGVQPALVDNEGHPQ 456 (652)
T ss_dssp HHHT-TTTCSCEEEEBCCGGGSSCSBCCCTTTCC---------------------BCTTCCBSBCTTCCEEEECTTCCBC
T ss_pred HHHh-CCCCCcEEccccCcccccceecCCCCCcC---------------------ccCCccccCcCCCeEEEECCCCCCc
Confidence 9988 5 8999999999999765543221100 134479999999999999976
Q ss_pred -CCceeEEEEcC--cchhhhhhhcccCCCCccC--CCceEeccceEEEcCCCcEEEeeccCceeeeCceeeChHHHHHHH
Q 019921 151 -SSHVGRILTRG--AHVMLRYWDQFLAKPSVST--GEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVL 225 (334)
Q Consensus 151 -~g~~Gel~v~g--~~~~~gy~~~~~~~~~~~~--~~~~~~TGDl~~~~~~G~l~~~GR~~d~i~~~G~~v~~~~iE~~l 225 (334)
.|+.|||+++| ++++.|||++++.+...+. .+|||+|||+|++|+||+++|+||.||+||++|++|+|.+||++|
T Consensus 457 ~~g~~GEl~i~g~~p~~~~gY~~~~e~~~~~~~~~~~g~y~TGDlg~~d~dG~l~i~GR~dd~Ik~~G~rI~~~eIE~~l 536 (652)
T 1pg4_A 457 EGATEGNLVITDSWPGQARTLFGDHERFEQTYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESAL 536 (652)
T ss_dssp CSSEEEEEEECSCCTTCCCEETTCHHHHHHHHHSSSTTSEEEEEEEEECTTSCEEEEEESSSEEEETTEEEEHHHHHHHH
T ss_pred CCCceEEEEEccCCCchhhhhcCCHHHHHhhhhhcCCCEEECCcEEEEcCCCcEEEEecCCCEEEECCEEECHHHHHHHH
Confidence 46789999999 7899999999887655442 378999999999999999999999999999999999999999999
Q ss_pred hcCCCcceEEEEEEecCcceeEEEEEEEeccCccccccccccccchhhhhccHHHHHHHHHhcCCCCcccceEEEeccCC
Q 019921 226 LQHPGIIGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKP 305 (334)
Q Consensus 226 ~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~ 305 (334)
.+||.|.+++|++++++..++.++++|+++++... .....++|++++++ .++.|++|+.++++ +.
T Consensus 537 ~~~p~V~ea~Vvg~~~~~~g~~l~a~Vv~~~~~~~-------------~~~~~~~l~~~l~~-~l~~~~~P~~i~~v-~~ 601 (652)
T 1pg4_A 537 VAHPKIAEAAVVGIPHAIKGQAIYAYVTLNHGEEP-------------SPELYAEVRNWVRK-EIGPLATPDVLHWT-DS 601 (652)
T ss_dssp HHSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCC-------------CHHHHHHHHHHHHH-HTCGGGCCSEEEEC-SC
T ss_pred HhCCCcceEEEEEEEcCCCCeEEEEEEEECCCCCC-------------CHHHHHHHHHHHHH-hCCCCcCCeEEEEc-CC
Confidence 99999999999999998889999999998865110 01135789999999 79999999998875 78
Q ss_pred ccCCCCCccchHHHHHHHHhhccc
Q 019921 306 FPLTSTGKIRRDEVRREVMSHLKS 329 (334)
Q Consensus 306 lP~t~~GKv~r~~l~~~~~~~~~~ 329 (334)
||+|++|||+|++|++.+.+.++.
T Consensus 602 lP~T~sGKi~R~~L~~~~~~~~~~ 625 (652)
T 1pg4_A 602 LPKTRSGKIMRRILRKIAAGDTSN 625 (652)
T ss_dssp CCBCTTSCBCHHHHHHHHHTC---
T ss_pred CCCCCCccchHHHHHHHHhCCCCC
Confidence 999999999999999999887544
No 7
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=100.00 E-value=1.4e-49 Score=375.50 Aligned_cols=278 Identities=27% Similarity=0.451 Sum_probs=242.1
Q ss_pred ceeeccceEEEcCCCCHHHHHHHHHhhcceEEEechHHHHHHHHHHhhccccCCCCCccEEEeccCCCCHHHHHHHHhhC
Q 019921 2 AMLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSF 81 (334)
Q Consensus 2 ~~l~~G~~~v~~~~~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~ 81 (334)
.+++.|+++++.+.+++..+++.++++++|+++++|+++..|.+..........+++||.+++||+++++++.+++.+.|
T Consensus 217 ~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~ 296 (504)
T 1t5h_X 217 AALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHL 296 (504)
T ss_dssp HHHHTTCEEEECSSCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHCCTTCCCCCTTCCEEEECCTTCCHHHHHHHHHHC
T ss_pred HHHHcCceEEeCCCCCHHHHHHHHHHhCCeEEEeChHHHHHHHhhhccccccccCccccEEEEcCCcCCHHHHHHHHHhc
Confidence 46788999999999999999999999999999999999999988753211223578999999999999999999999999
Q ss_pred CCCceEcccccccccccccccccCCCCCCCCCCCCCcccCCCCCCCCCCCceeeccccCcceEEEeeCC--------CCc
Q 019921 82 PKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG--------SSH 153 (334)
Q Consensus 82 ~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~~~~--------~g~ 153 (334)
++.+++.||+||++. +.... .. ..+++|.|.+++++++++++ .|+
T Consensus 297 -~~~~~~~YG~TE~~~--~~~~~-~~-----------------------~~~~~g~p~~~~~~~i~~~~~~~~~~~~~g~ 349 (504)
T 1t5h_X 297 -PGEKVNIYGTTEAMN--SLYMR-QP-----------------------KTGTEMAPGFFSEVRIVRIGGGVDEIVANGE 349 (504)
T ss_dssp -CSEEEEEEEETTTEE--EEEEE-SC-----------------------SSSSEEBCCTTCCEEEECTTSCTTCBCCTTC
T ss_pred -Ccceeeeeccccccc--ccccc-CC-----------------------CCCccccCCCCCceeEEeccCCCCCcCCCCC
Confidence 789999999999932 22211 10 22358999999999998864 467
Q ss_pred eeEEEEc-CcchhhhhhhcccCCCCccCCCceEeccceEEEcCCCcEEEeeccCceeeeCceeeChHHHHHHHhcCCCcc
Q 019921 154 VGRILTR-GAHVMLRYWDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGII 232 (334)
Q Consensus 154 ~Gel~v~-g~~~~~gy~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~ 232 (334)
.|||+++ |+.++.||+++++.+...| .+|||+|||+|++++||+++++||.||+||++|++|+|.+||++|.+||+|.
T Consensus 350 ~GEl~v~gg~~~~~GY~~~~~~t~~~f-~~g~~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~ 428 (504)
T 1t5h_X 350 EGELIVAASDSAFVGYLNQPQATAEKL-QDGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVT 428 (504)
T ss_dssp CEEEEEECCTTSCCCBTTCHHHHHHHE-ETTEEEEEEEEEECTTSCEEEEEEGGGCEEETTEEECHHHHHHHHTTSTTEE
T ss_pred cceEEEeCCceeeceecCCchhhhhhh-cCCccccCcEEEECCCceEEEeCcccCEEEECCEEECHHHHHHHHHhCCCcc
Confidence 8999999 8999999999999888888 6789999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEEecCcceeEEEEEEEeccCccccccccccccchhhhhccHHHHHHHHHhcCCCCcccceEEEeccCCccCCCCC
Q 019921 233 GIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTG 312 (334)
Q Consensus 233 ~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~G 312 (334)
+++|++.+++..++.++++|+++++ ...+.+++++++++..++.|++|+.++++ ++||+|++|
T Consensus 429 ~a~Vv~~~~~~~g~~~~a~vv~~~~----------------~~~~~~~l~~~~~~~~L~~~~~P~~i~~v-~~lP~t~~G 491 (504)
T 1t5h_X 429 EVVVIGLADQRWGQSVTACVVPRLG----------------ETLSADALDTFCRSSELADFKRPKRYFIL-DQLPKNALN 491 (504)
T ss_dssp EEEEEEEECSSSSEEEEEEEEECTT----------------CCCCHHHHHHHHHTSSCCGGGSCSEEEEC-SCCCBCTTS
T ss_pred eEEEEEeecCCCCcEEEEEEEecCC----------------cCcCHHHHHHHHhhccCcccccceEEEEh-hhCCCCCCC
Confidence 9999999998888999999998764 12456788999987459999999999875 789999999
Q ss_pred ccchHHHHHHHH
Q 019921 313 KIRRDEVRREVM 324 (334)
Q Consensus 313 Kv~r~~l~~~~~ 324 (334)
||+|++|++++.
T Consensus 492 Ki~r~~L~~~~~ 503 (504)
T 1t5h_X 492 KVLRRQLVQQVS 503 (504)
T ss_dssp CBCHHHHHHHHC
T ss_pred CEeHHHHHHHhc
Confidence 999999999874
No 8
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=100.00 E-value=1.9e-51 Score=392.07 Aligned_cols=289 Identities=26% Similarity=0.374 Sum_probs=154.0
Q ss_pred ceeeccceEEEcCCCCHHHHHHHHHhhcceEEEechHHHHHHHHHHhhccccCCCCCccEEEeccCCCCHHHHHHHHhhC
Q 019921 2 AMLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSF 81 (334)
Q Consensus 2 ~~l~~G~~~v~~~~~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~ 81 (334)
.+++.|+++++.+.+++..+++.++++++|+++++|+++..+++...... ..+++||.+++||+++++++.+++.+.|
T Consensus 254 ~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~--~~l~~lr~i~~gG~~l~~~~~~~~~~~~ 331 (550)
T 3rix_A 254 GYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLIDK--YDLSNLHEIASGGAPLSKEVGEAVAKRF 331 (550)
T ss_dssp HHHHHTCEEEECSSCCHHHHHHHHHHTTCSEEEECHHHHHHHHHCCGGGG--SCCTTCCEEEECSSCCCHHHHHHHHHHT
T ss_pred HHHHcCCEEEEeCCCCHHHHHHHHHHcCCeEEEeCcHHHHHHHhCccccc--cCcccccEEEEecCCCCHHHHHHHHHHc
Confidence 45788999999999999999999999999999999999999987654433 2578999999999999999999999999
Q ss_pred CCCceEcccccccccccccccccCCCCCCCCCCCCCcccCCCCCCCCCCCceeeccccCcceEEEeeCC------CCcee
Q 019921 82 PKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG------SSHVG 155 (334)
Q Consensus 82 ~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~~~~------~g~~G 155 (334)
+...+++.||+||++..++....... ..+++|+|+|+++++|+|++ .|+.|
T Consensus 332 ~~~~v~~~YG~TE~~~~~~~~~~~~~-----------------------~~~~vG~~~~~~~~~i~d~~~~~~~~~g~~G 388 (550)
T 3rix_A 332 HLPGIRQGYGLTETTSAILITPEGDD-----------------------KPGAVGKVVPFFEAKVVDLDTGKTLGVNQRG 388 (550)
T ss_dssp TCSCCEEEEECGGGSSEEEECCTTCC-----------------------CTTEEEEECTTCEEEEECTTTCCBCCTTCCE
T ss_pred CCCccccccCcCccccceecCCCCCC-----------------------CCCCcccccCCcEEEEEeCCCCcCCCCCCCe
Confidence 44459999999999976654332211 33479999999999999854 57889
Q ss_pred EEEEcCcchhhhhhhcccCCCCccCCCceEeccceEEEcCCCcEEEeeccCceeeeCceeeChHHHHHHHhcCCCcceEE
Q 019921 156 RILTRGAHVMLRYWDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIV 235 (334)
Q Consensus 156 el~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~ 235 (334)
||+|+|++++.||+++++.+...|+.++||+|||+|++++||+++++||.||+||++|++|+|.+||++|.+||+|.+++
T Consensus 389 El~v~g~~v~~GY~~~~~~t~~~~~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~ 468 (550)
T 3rix_A 389 ELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESILLQHPNIFDAG 468 (550)
T ss_dssp EEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTCCEEEC---------------------------------
T ss_pred EEEEeCCCcchhhcCChhhhhhhcCCCCCeecCcEEEEeCCceEEEEecchheeEECCEEECHHHHHHHHHhCCCcceEE
Confidence 99999999999999999999988888999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCcceeEEEEEEEeccCccccccccccccchhhhhccHHHHHHHHHhcCCCCcccce-EEEeccCCccCCCCCcc
Q 019921 236 VVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPR-LFVLWRKPFPLTSTGKI 314 (334)
Q Consensus 236 v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~-~~~~~~~~lP~t~~GKv 314 (334)
|++++++..++.++++|++.++ ...+.+++++++++ .++.++.|. .+++ +++||+|++||+
T Consensus 469 vv~~~~~~~g~~~~a~vv~~~~----------------~~~~~~~l~~~~~~-~l~~~~~~~~~i~~-v~~lP~t~~GKi 530 (550)
T 3rix_A 469 VAGLPDDDAGELPAAVVVLEHG----------------KTMTEKEIVDYVAS-QVTTAKKLRGGVVF-VDEVPKGLTGKL 530 (550)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEeecCCCCceEEEEEEecCC----------------CCCCHHHHHHHHHH-hcccccccCCceEE-EeecCCCCCcce
Confidence 9999999889999999987765 12456788899988 688886655 4554 488999999999
Q ss_pred chHHHHHHHHhhcccCCCC
Q 019921 315 RRDEVRREVMSHLKSLPSN 333 (334)
Q Consensus 315 ~r~~l~~~~~~~~~~l~~~ 333 (334)
+|++|++++.+..++-++.
T Consensus 531 ~r~~L~~~~~~~~~~~~~~ 549 (550)
T 3rix_A 531 DARKIREILIKAKKGGKSK 549 (550)
T ss_dssp -------------------
T ss_pred eHHHHHHHHHhhccccccC
Confidence 9999999998887765554
No 9
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=100.00 E-value=1.1e-49 Score=377.13 Aligned_cols=280 Identities=24% Similarity=0.456 Sum_probs=245.3
Q ss_pred eeccceEEEcCCCCHHHHHHHHHhhcceEEEechHHHHHHHHHHhhccccCCCCCccEEEeccCCCCHHHHHHHHhhCCC
Q 019921 4 LMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFPK 83 (334)
Q Consensus 4 l~~G~~~v~~~~~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~ 83 (334)
++.|+++++.+.+++..+++.++++++|++.++|+++..|.+....... .+++||.+++||+++++++.+++.+. +
T Consensus 233 ~~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~--~~~~lr~i~~gGe~l~~~~~~~~~~~--~ 308 (517)
T 3r44_A 233 AMRGVTLISMPQFDATKVWSLIVEERVCIGGAVPAILNFMRQVPEFAEL--DAPDFRYFITGGAPMPEALIKIYAAK--N 308 (517)
T ss_dssp HHHTCEEEECSSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHSHHHHHC--CCTTCCEEEECSSCCCHHHHHHHHHT--T
T ss_pred HhcCeEEEEeCCCCHHHHHHHHHHhCCeEEEeHHHHHHHHHhCcccccC--CCCcccEEEECCCCCCHHHHHHHHhc--C
Confidence 3489999999999999999999999999999999999999877654433 57899999999999999999999886 8
Q ss_pred CceEcccccccccccccccccCCCCCCCCCCCCCcccCCCCCCCCCCCceeeccccCcceEEEeeCC----CCceeEEEE
Q 019921 84 AKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG----SSHVGRILT 159 (334)
Q Consensus 84 ~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~~~~----~g~~Gel~v 159 (334)
+++++.||+||++..++........ ...+++|.|.++++++++|++ +...|||+|
T Consensus 309 ~~~~~~YG~TE~~~~~~~~~~~~~~---------------------~~~~~~G~~~~~~~~~i~d~~~~~~~~g~GEl~v 367 (517)
T 3r44_A 309 IEVVQGYALTESCGGGTLLLSEDAL---------------------RKAGSAGRATMFTDVAVRGDDGVIREHGEGEVVI 367 (517)
T ss_dssp CEEEEEEECGGGTTCEEEECGGGTT---------------------TTTTCCBEECTTEEEEEECTTSCEESSEEEEEEE
T ss_pred CcEEEeecccccccceeecCCcccc---------------------ccCCCCCcCCCCeEEEEECCCCCCCCCCCeEEEE
Confidence 9999999999998766544332211 033469999999999999876 222799999
Q ss_pred cCcchhhhhhhcccCCCCccCCCceEeccceEEEcCCCcEEEeeccCceeeeCceeeChHHHHHHHhcCCCcceEEEEEE
Q 019921 160 RGAHVMLRYWDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGI 239 (334)
Q Consensus 160 ~g~~~~~gy~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~ 239 (334)
+|++++.||+++++.+...| .++||+|||+|++++||+++|+||.||+||++|++|+|.+||++|.+||+|.+++|+++
T Consensus 368 ~g~~v~~GY~~~p~~t~~~f-~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~~~Vv~~ 446 (517)
T 3r44_A 368 KSDILLKEYWNRPEATRDAF-DNGWFRTGDIGEIDDEGYLYIKDRLKDMIISGGENVYPAEIESVIIGVPGVSEVAVIGL 446 (517)
T ss_dssp EETTSCSEETTCHHHHHHTE-ETTEEEEEEEEEECTTSCEEEEECGGGCEEETTEEECHHHHHHHHTTSTTEEEEEEEEE
T ss_pred eCcchhhhhCCChhhhHhhh-cCCCEecceeEEEcCCeeEEEecCCcCEEEECCEEECHHHHHHHHHhCCCEeEEEEEec
Confidence 99999999999999998888 67999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCcceeEEEEEEEeccCccccccccccccchhhhhccHHHHHHHHHhcCCCCcccceEEEeccCCccCCCCCccchHHH
Q 019921 240 ANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEV 319 (334)
Q Consensus 240 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GKv~r~~l 319 (334)
+++..++.++++| +.+. ...+.++|++++++ .|+.|++|+.++++ ++||+|++|||+|++|
T Consensus 447 ~~~~~g~~~~a~v-~~~~----------------~~~~~~~l~~~l~~-~L~~~~~P~~i~~v-~~lP~t~~GKi~R~~L 507 (517)
T 3r44_A 447 PDEKWGEIAAAIV-VADQ----------------NEVSEQQIVEYCGT-RLARYKLPKKVIFA-EAIPRNPTGKILKTVL 507 (517)
T ss_dssp EETTTEEEEEEEE-EECT----------------TTCCHHHHHHHHHH-HSCGGGSCSEEEEC-SCCCBCTTCCBCHHHH
T ss_pred cccccCceEEEEE-ECCC----------------CCCCHHHHHHHHHH-hCCCCCCCCEEEEE-CCCCCCCCcCccHHHH
Confidence 9998888888888 4443 12556889999999 79999999998875 8899999999999999
Q ss_pred HHHHHhhcc
Q 019921 320 RREVMSHLK 328 (334)
Q Consensus 320 ~~~~~~~~~ 328 (334)
++.+.+.+.
T Consensus 508 ~~~~~~~~~ 516 (517)
T 3r44_A 508 REQYSATVP 516 (517)
T ss_dssp HHHHGGGCC
T ss_pred HHHHHhhcc
Confidence 999998775
No 10
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=100.00 E-value=8.6e-50 Score=380.58 Aligned_cols=287 Identities=23% Similarity=0.330 Sum_probs=210.8
Q ss_pred ceeeccceEEEcCCCCHHHHHHHHHhhcceEEEechHHHHHHHHHHhhccccCCCCCccEEEeccCCCCHHHHHHHHhh-
Q 019921 2 AMLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNS- 80 (334)
Q Consensus 2 ~~l~~G~~~v~~~~~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~- 80 (334)
.++..|+++++.+.+++..+++.++++++|+++++|+++..|++..........+++||.+++||+++++++.+++.+.
T Consensus 241 ~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~~~~gg~~l~~~~~~~~~~~~ 320 (549)
T 3g7s_A 241 LMVTVGNEYVVMGMFNQEMLAENIEKYKGTFSWAVPPALNVLVNTLESSNKTYDWSYLKVFATGAWPVAPALVEKLLKLA 320 (549)
T ss_dssp THHHHCCEEEEESSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHSCCCCCCTTCCEEEEESSCCCHHHHHHHHHHH
T ss_pred HHHhcCceEEEcCCCCHHHHHHHHHHhCCeEEEeCCHHHHHHHhhhhhhcccCCccceeEEEeCCccCCHHHHHHHHHHH
Confidence 4678899999999999999999999999999999999999999887665533467899999999999999999999987
Q ss_pred ---CC--CCceEcccccccccccccccccCCCCCCCCCCCCCcccCCCCCCCCCCCceeeccccCcceEEEeeCC-----
Q 019921 81 ---FP--KAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG----- 150 (334)
Q Consensus 81 ---~~--~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~~~~----- 150 (334)
++ ++++++.||+||++.+++........ ...++|.|+++++++++|++
T Consensus 321 ~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~----------------------~~~~~G~p~~~~~~~i~d~~~g~~~ 378 (549)
T 3g7s_A 321 AEKCNNPRLRHNQIWGMTEACPMVTTNPPLRLD----------------------KSTTQGVPMSDIELKVISLEDGREL 378 (549)
T ss_dssp HHHSSCTTCEEEEEEECGGGSSEEEECCGGGGG----------------------GTTSCCEECTTCEEEEECSSSCCEE
T ss_pred HhhcCCccccccceEeccccchhhhcCCccccC----------------------cCCCccccCCCCEEEEEeCCCCcCC
Confidence 62 38999999999999766554332111 23368999999999999843
Q ss_pred -CCceeEEEEcCcchhhhhhhcccCCCCccC--CCc--eEeccceEEEcCCCcEEEeeccCceeeeCceeeChHHHHHHH
Q 019921 151 -SSHVGRILTRGAHVMLRYWDQFLAKPSVST--GEV--WLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVL 225 (334)
Q Consensus 151 -~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~--~~~--~~~TGDl~~~~~~G~l~~~GR~~d~i~~~G~~v~~~~iE~~l 225 (334)
.|+.|||+|+|++++.||+++++.+...|. .+| ||+|||+|++++||+++|+||.||+||++|++|+|.+||++|
T Consensus 379 ~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~g~~~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l 458 (549)
T 3g7s_A 379 GVGESGEIVIRGPNIFKGYWKREKENQECWWYDEKGRKFFRTGDVGFIDEEGFLHFQDRVKEVIKYKGYTIAPFELEALL 458 (549)
T ss_dssp CTTCCEEEEEESTTSCSEETTCTTGGGTSEEECTTCCEEEEEEEEEEECTTSCEEEEEEC------------CHHHHHHH
T ss_pred CCCCceEEEEECcchhhhhCCChhhhhhhhhccCCCCceEccCcEEEEcCCceEEEeccccceEEECCEEECHHHHHHHH
Confidence 578899999999999999999999988763 455 999999999999999999999999999999999999999999
Q ss_pred hcCCCcceEEEEEEecCcceeEEEEEEEeccCccccccccccccchhhhhccHHHHHHHHHhcCCCCcccceEEEeccCC
Q 019921 226 LQHPGIIGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKP 305 (334)
Q Consensus 226 ~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~ 305 (334)
.+||+|.+++|++.+++..++.++++|+++++.. ...+.++|++++++ .|+.|++|+.++++ ++
T Consensus 459 ~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~--------------~~~~~~~l~~~l~~-~L~~~~~P~~i~~v-~~ 522 (549)
T 3g7s_A 459 MKHEAVMDVAVIGKPDEEAGEVPKAFIVLKPEYR--------------GKVDEEDIIEWVRE-RISGYKRVREVEFV-EE 522 (549)
T ss_dssp TTSTTEEEEEEECCCC------CEEEEEECSTTT--------------TSCCHHHHHHHHHT-TCC-----CCCCEE-EE
T ss_pred HhCCCeeeEEEEeeEccccCceEEEEEEECCCcc--------------CcCCHHHHHHHHHH-hccCcccceEEEEe-cc
Confidence 9999999999999999888899999999876411 12567889999999 89999999988765 77
Q ss_pred ccCCCCCccchHHHHHHHHhh
Q 019921 306 FPLTSTGKIRRDEVRREVMSH 326 (334)
Q Consensus 306 lP~t~~GKv~r~~l~~~~~~~ 326 (334)
||+|++|||+|++|++.+.+.
T Consensus 523 lP~t~~GKi~R~~L~~~~~~~ 543 (549)
T 3g7s_A 523 LPRTASGKLLRRLLREKEAEG 543 (549)
T ss_dssp CC-------------------
T ss_pred CCCCCCcCEeHHHHHHHhhcc
Confidence 999999999999999987654
No 11
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=100.00 E-value=2.6e-49 Score=373.35 Aligned_cols=275 Identities=28% Similarity=0.405 Sum_probs=225.2
Q ss_pred ceeeccceEEEcCCCCHHHHHHHHHhhcceEEEechHHHHHHHHHHhhccccCCCCCccEEEeccCCCCHHHHHHHHhhC
Q 019921 2 AMLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSF 81 (334)
Q Consensus 2 ~~l~~G~~~v~~~~~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~ 81 (334)
.+++.|+++++.+.+++..+++.++++++|+++++|+++..|.+..... ..+||.+++||+++++++.+++.+ +
T Consensus 224 ~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~-----~~~lr~i~~gG~~l~~~~~~~~~~-~ 297 (501)
T 3ipl_A 224 RAVIEGFTVRIVDKFNAEQILTMIKNERITHISLVPQTLNWLMQQGLHE-----PYNLQKILLGGAKLSATMIETALQ-Y 297 (501)
T ss_dssp HHHHHTCEEEECSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHHHTCCS-----CTTCCEEEECSSCCCHHHHHHHHH-T
T ss_pred HHHHcCceEEeCCCCCHHHHHHHHHHcCCcEEEchHHHHHHHHhcCCCC-----cCcccEEEEeCCCCCHHHHHHHHH-h
Confidence 4678999999999999999999999999999999999999998764322 238999999999999999999988 4
Q ss_pred CCCceEcccccccccccccccccCCCCCCCCCCCCCcccCCCCCCCCCCCceeeccccCcceEEEeeCCCCceeEEEEcC
Q 019921 82 PKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDGSSHVGRILTRG 161 (334)
Q Consensus 82 ~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~~~~~g~~Gel~v~g 161 (334)
++++++.||+||+++.++......... ...++|.|+++++++++|++.++.|||+++|
T Consensus 298 -~~~~~~~YG~TE~~~~~~~~~~~~~~~---------------------~~~~~G~p~~~~~~~i~d~~~~~~GEl~v~g 355 (501)
T 3ipl_A 298 -NLPIYNSFGMTETCSQFLTATPEMLHA---------------------RPDTVGMPSANVDVKIKNPNKEGHGELMIKG 355 (501)
T ss_dssp -TCCEEEEEEEGGGTEEEEEECHHHHHH---------------------CTTCCBEECTTCEEEEESCCSSCCEEEEEES
T ss_pred -CCCEeccccccccccceeecCcccccc---------------------CCCCCCCCCCCcEEEEecCCCCCccEEEEec
Confidence 899999999999986544332211000 2235999999999999999888999999999
Q ss_pred cchhhhhhhcccCCCCccCCCceEeccceEEEcCCCcEEEeeccCceeeeCceeeChHHHHHHHhcCCCcceEEEEEEec
Q 019921 162 AHVMLRYWDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGIAN 241 (334)
Q Consensus 162 ~~~~~gy~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~ 241 (334)
+.++.||+++++.+.. + .++||+|||+|++++||+++++||.||+||++|++|+|.+||++|.+||+|.+++|++.++
T Consensus 356 ~~~~~gY~~~~~~t~~-~-~~g~~~TGDl~~~~~~G~l~~~GR~dd~ik~~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~ 433 (501)
T 3ipl_A 356 ANVMNGYLYPTDLTGT-F-ENGYFNTGDIAEIDHEGYVMIYDRRKDLIISGGENIYPYQIETVAKQFPGISDAVCVGHPD 433 (501)
T ss_dssp TTSCSCCSBSTTCCCS-E-ETTEEEEEEEEEECTTSCEEEEEECCCCEECSSCEECHHHHHHHHTTSTTEEEEEEEEEEE
T ss_pred cchhhhhCcChhhcch-h-cCCceecCCEEEEcCCCeEEEEccccceEEECCEEECHHHHHHHHHhCCCccEEEEEEEec
Confidence 9999999999998887 4 6789999999999999999999999999999999999999999999999999999999999
Q ss_pred CcceeEEEEEEEeccCccccccccccccchhhhhccHHHHHHHHHhcCCCCcccceEEEeccCCccCCCCCccchHHHHH
Q 019921 242 ARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVRR 321 (334)
Q Consensus 242 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GKv~r~~l~~ 321 (334)
+..++.++++++.... .+.+++++++++ .++.|++|+.++++ ++||+|++||++|++|++
T Consensus 434 ~~~g~~~~a~v~~~~~------------------~~~~~l~~~l~~-~L~~~~~P~~i~~v-~~lP~t~~GKi~R~~l~~ 493 (501)
T 3ipl_A 434 DTWGQVPKLYFVSESD------------------ISKAQLIAYLSK-HLAKYKVPKHFEKV-DTLPYTSTGKLQRNKLYR 493 (501)
T ss_dssp TTTEEEEEEEEEESSC------------------CCHHHHHHHHHH-HSCGGGSCSEEEEC-SSCC--------------
T ss_pred ccCCceEEEEEEeCCC------------------CCHHHHHHHHHh-hCccccCCCEEEEe-cccCCCCCCCEeHHHHhh
Confidence 9889999998886443 557889999999 79999999998875 889999999999999999
Q ss_pred HHHhh
Q 019921 322 EVMSH 326 (334)
Q Consensus 322 ~~~~~ 326 (334)
.....
T Consensus 494 ~~~~~ 498 (501)
T 3ipl_A 494 EGHHH 498 (501)
T ss_dssp -----
T ss_pred ccccc
Confidence 87654
No 12
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*
Probab=100.00 E-value=2e-49 Score=374.98 Aligned_cols=290 Identities=21% Similarity=0.289 Sum_probs=245.7
Q ss_pred ceeeccceEEEcCC---CCHHHHHHHHHhhcceEEEechHHHHHHHHHHhhccccCCCCCccEEEeccCCCCHHHHHHHH
Q 019921 2 AMLMVGACHVFIPK---FESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEAT 78 (334)
Q Consensus 2 ~~l~~G~~~v~~~~---~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~ 78 (334)
.++..|+++++.+. +++..+++.++++++|+++++|+++..++....... ..++++|.+++||+++++++.+++.
T Consensus 204 ~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~--~~~~~l~~~~~~G~~l~~~~~~~~~ 281 (511)
T 3e7w_A 204 PCLQSGGTLHCVTKDAVNKPKVLFEELKKSGLNVWTSTPSFVQMCLMDPGFSQ--DLLPHADTFMFCGEVLPVSVAKALL 281 (511)
T ss_dssp HHHHTTCEEEECCHHHHHSHHHHHHHHHHHCCSEEEECHHHHHHHHTSTTCST--TTCTTCCEEEECSSCCCHHHHHHHH
T ss_pred HHHhcCCEEEEcChhhhcCHHHHHHHHHHcCCcEEEecHHHHHHHHhcccccc--ccCCcccEEEEecCCCCHHHHHHHH
Confidence 46788999999876 689999999999999999999999998876543322 3578999999999999999999999
Q ss_pred hhCCCCceEcccccccccccccccccCCCCCCCCCCCCCcccCCCCCCCCCCCceeeccccCcceEEEeeCC-----CCc
Q 019921 79 NSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG-----SSH 153 (334)
Q Consensus 79 ~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~~~~-----~g~ 153 (334)
+.|+++++++.||+||++..++.......... .....++|.|+|+++++|+|++ .|+
T Consensus 282 ~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~------------------~~~~~~~G~~~~~~~~~i~d~~g~~~~~g~ 343 (511)
T 3e7w_A 282 ERFPKAKIFNTYGPTEATVAVTSVEITNDVIS------------------RSESLPVGFAKPDMNIFIMDEEGQPLPEGE 343 (511)
T ss_dssp HHCTTCEEEECCCCGGGSSCSEEEEECHHHHT------------------TCSSCCCBEECTTCEEEEECTTSCBCCTTC
T ss_pred HHCCCcEEEeCcccchheeeeeEEeccccccc------------------cCCcCCCcceeCCCEEEEECCCCCCCCCCC
Confidence 99999999999999999977665433211000 0123369999999999999976 678
Q ss_pred eeEEEEcCcchhhhhhhcccCCCCcc---CCCceEeccceEEEcCCCcEEEeeccCceeeeCceeeChHHHHHHHhcCCC
Q 019921 154 VGRILTRGAHVMLRYWDQFLAKPSVS---TGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPG 230 (334)
Q Consensus 154 ~Gel~v~g~~~~~gy~~~~~~~~~~~---~~~~~~~TGDl~~~~~~G~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~ 230 (334)
.|||+|+|++++.||+++++.+...| ++..||+|||+|++ +||+++++||.||+||++|++|+|.+||++|.+||.
T Consensus 344 ~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~g~~~~~TGDlg~~-~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~p~ 422 (511)
T 3e7w_A 344 KGEIVIAGPSVSRGYLGEPELTEKAFFSHEGQWAYRTGDAGFI-QDGQIFCQGRLDFQIKLHGYRMELEEIEFHVRQSQY 422 (511)
T ss_dssp CEEEEEESTTSCCCBTTCHHHHHHHEEESSSSEEEEEEEEEEE-ETTEEEEEEESSSEEEETTEEEEHHHHHHHHHHSTT
T ss_pred ceEEEEecCccChhhCCCcccchhhhcCCCCCEEEeCCCeEEc-cCCeEEEEccccCEEEECCEEeCHHHHHHHHHhCCC
Confidence 89999999999999999999888776 23348999999999 589999999999999999999999999999999999
Q ss_pred cceEEEEEEecCcceeEEEEEEEeccCccccccccccccchhhhhccHHHHHHHHHhcCCCCcccceEEEeccCCccCCC
Q 019921 231 IIGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTS 310 (334)
Q Consensus 231 v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~ 310 (334)
|.+++|++++++..++.+++++++.+.... ......+++++++++ .++.|++|+.++++ ++||+|+
T Consensus 423 V~~a~vv~~~~~~~~~~~~a~vv~~~~~~~------------~~~~~~~~l~~~l~~-~L~~~~~P~~~~~v-~~lP~t~ 488 (511)
T 3e7w_A 423 VRSAVVIPYQPNGTVEYLIAAIVPEEHEFE------------KEFQLTSAIKKELAA-SLPAYMIPRKFIYQ-DHIQMTA 488 (511)
T ss_dssp EEEEEEEEECSSSSCCEEEEEEEECCCCCS------------SHHHHHHHHHHHHHH-HSCGGGSCSEEEEC-SCCCBCT
T ss_pred cceEEEEEEcCCCCceEEEEEEEecccccc------------chhhHHHHHHHHHHh-hCchhhCCeeEEEe-ccCCCCC
Confidence 999999999988888899999988765110 011235789999999 79999999999875 8899999
Q ss_pred CCccchHHHHHHHHhh
Q 019921 311 TGKIRRDEVRREVMSH 326 (334)
Q Consensus 311 ~GKv~r~~l~~~~~~~ 326 (334)
+|||+|++|++.+.++
T Consensus 489 ~GKi~R~~L~~~~~~~ 504 (511)
T 3e7w_A 489 NGKIDRKRIGEEVLVR 504 (511)
T ss_dssp TSCBCHHHHHHHHHHH
T ss_pred CcCccHHHHHhHHhhh
Confidence 9999999999998765
No 13
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*
Probab=100.00 E-value=1.2e-49 Score=376.73 Aligned_cols=292 Identities=23% Similarity=0.310 Sum_probs=246.7
Q ss_pred ceeeccceEEEcCC---CCHHHHHHHHHhhcceEEEechHHHHHHHHHHhhccccCCCCCccEEEeccCCCCHHHHHHHH
Q 019921 2 AMLMVGACHVFIPK---FESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEAT 78 (334)
Q Consensus 2 ~~l~~G~~~v~~~~---~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~ 78 (334)
.+++.|+++++.+. +++..+++.++++++|++.++|+++..++....... ..+++||.+++||+++++++.+++.
T Consensus 205 ~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~--~~~~~lr~~~~~G~~l~~~~~~~~~ 282 (512)
T 3fce_A 205 PSLVTGGTLWAIDKDMIARPKDLFASLEQSDIQVWTSTPSFAEMCLMEASFSE--SMLPNMKTFLFCGEVLPNEVARKLI 282 (512)
T ss_dssp HHHHTTCEEEECCHHHHHSHHHHHHHHHHHCCCEEEECHHHHHHHTTSTTCST--TTSTTCCEEEECSSCCCHHHHHHHH
T ss_pred HHHhCCCEEEECCHHHhhCHHHHHHHHHHcCCcEEEecHHHHHHHHhhccccc--hhCccccEEEEecCcCCHHHHHHHH
Confidence 46788999999886 789999999999999999999999988876544332 3578999999999999999999999
Q ss_pred hhCCCCceEcccccccccccccccccCCCCCCCCCCCCCcccCCCCCCCCCCCceeeccccCcceEEEeeCC-----CCc
Q 019921 79 NSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG-----SSH 153 (334)
Q Consensus 79 ~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~~~~-----~g~ 153 (334)
+.|+++++++.||+||++..++.......... .....++|.|.++++++++|++ .|+
T Consensus 283 ~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~------------------~~~~~~~G~~~~~~~~~i~d~~g~~~~~g~ 344 (512)
T 3fce_A 283 ERFPKATIMNTYGPTEATVAVTGIHVTEEVLD------------------QYKSLPVGYCKSDCRLLIMKEDGTIAPDGE 344 (512)
T ss_dssp HHCTTCEEEEEECCGGGSSCSEEEECCHHHHH------------------HCSSCCCEEECTTCEEEEECSSSCBCCTTS
T ss_pred HHCCCCEEEeCcccChhhhheeeEEecccccc------------------ccCCCccccccCCcEEEEECCCCCCCCCCC
Confidence 99989999999999999976664432211000 0023358999999999999876 588
Q ss_pred eeEEEEcCcchhhhhhhcccCCCCcc---CCCceEeccceEEEcCCCcEEEeeccCceeeeCceeeChHHHHHHHhcCCC
Q 019921 154 VGRILTRGAHVMLRYWDQFLAKPSVS---TGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPG 230 (334)
Q Consensus 154 ~Gel~v~g~~~~~gy~~~~~~~~~~~---~~~~~~~TGDl~~~~~~G~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~ 230 (334)
.|||+++|++++.||+++++.+...| ++++||+|||+|++ +||++++.||.||+||++|++|+|.+||++|.+||+
T Consensus 345 ~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~TGDlg~~-~dG~l~i~GR~~d~ik~~G~~v~p~eIE~~l~~~p~ 423 (512)
T 3fce_A 345 KGEIVIVGPSVSVGYLGSPELTEKAFTMIDGERAYKTGDAGYV-ENGLLFYNGRLDFQIKLHGYRMELEEIEHHLRACSY 423 (512)
T ss_dssp CEEEEEESTTSCSCBTTCHHHHHHHEEEETTEEEEEEEEEEEE-ETTEEEEEEEGGGCEEETTEEECHHHHHHHHHHSTT
T ss_pred eEEEEEeccccChhhcCCchhhhhccccCCCCEEEeCCceEEe-cCCEEEEecccCCEEEECCEEECHHHHHHHHHhCCC
Confidence 99999999999999999999888776 56789999999999 799999999999999999999999999999999999
Q ss_pred cceEEEEEEecCcceeEEEEEEEeccCccccccccccccchhhhhccHHHHHHHHHhcCCCCcccceEEEeccCCccCCC
Q 019921 231 IIGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTS 310 (334)
Q Consensus 231 v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~ 310 (334)
|.+++|++++++..++.++++|++.+.... ......+++++++++ .++.|++|+.++++ ++||+|+
T Consensus 424 V~~a~vv~~~~~~~~~~~~a~vv~~~~~~~------------~~~~~~~~l~~~l~~-~L~~~~~P~~~~~~-~~lP~t~ 489 (512)
T 3fce_A 424 VEGAVIVPIKKGEKYDYLLAVVVPGEHSFE------------KEFKLTSAIKKELNE-RLPNYMIPRKFMYQ-SSIPMTP 489 (512)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEECSCCCS------------SHHHHHHHHHHHHHT-TSCGGGSCSEEEEC-SCCCBCT
T ss_pred cceEEEEEEecCCCceEEEEEEecCCcccc------------chhhhHHHHHHHHHh-hCchhcCCeEEEEe-cccCCCC
Confidence 999999999998888999999988764110 011234679999999 79999999998775 8899999
Q ss_pred CCccchHHHHHHHHhhcc
Q 019921 311 TGKIRRDEVRREVMSHLK 328 (334)
Q Consensus 311 ~GKv~r~~l~~~~~~~~~ 328 (334)
+||++|++|++.+.+.-+
T Consensus 490 ~GKi~R~~L~~~~~~~~~ 507 (512)
T 3fce_A 490 NGKVDRKKLLSEVTALEH 507 (512)
T ss_dssp TSSBCHHHHHHHHHC---
T ss_pred CcChHHHHHHhhhhhccc
Confidence 999999999999887543
No 14
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=100.00 E-value=3.6e-50 Score=382.49 Aligned_cols=294 Identities=24% Similarity=0.355 Sum_probs=212.3
Q ss_pred ceeeccceEEEcCC-CCHHHHHHHHHhhcceEEEechHHHHHHHHHHhhccccCCCCCccEEEeccCCCCHHHHHHHHhh
Q 019921 2 AMLMVGACHVFIPK-FESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNS 80 (334)
Q Consensus 2 ~~l~~G~~~v~~~~-~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~ 80 (334)
.+++.|+++++.+. +++..+++.++++++|+++++|+++..|++....... .+++||.+++||+++++++.+++ +.
T Consensus 239 ~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~--~l~~lr~i~~gG~~l~~~~~~~~-~~ 315 (541)
T 1v25_A 239 AATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTGH--RLKTLRRLVVGGSAAPRSLIARF-ER 315 (541)
T ss_dssp HHHHHTCEEEECTTCCSHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHHTC--CCSSCCEEEECSSCCCHHHHHHH-HH
T ss_pred HHHhcCceEEeeCCCCCHHHHHHHHHhcCeeEEecchHHHHHHHhhhhccCC--cchhccEEEECCCCCCHHHHHHH-HH
Confidence 45788999999874 7999999999999999999999999999887654432 57899999999999999999999 66
Q ss_pred CCCCceEcccccccccccccccccCCCCCCCCCCCCCcccCCCCCCCCCCCceeeccccCcceEEEeeCCC-------Cc
Q 019921 81 FPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDGS-------SH 153 (334)
Q Consensus 81 ~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~~~~~-------g~ 153 (334)
+ ++++++.||+||++..++......... . .++.. ......++|.|+|+++++|+|++. ++
T Consensus 316 ~-g~~~~~~YG~TE~~~~~~~~~~~~~~~-~----------~~~~~-~~~~~~~~G~p~~~~~~~i~d~~g~~~~~~~~~ 382 (541)
T 1v25_A 316 M-GVEVRQGYGLTETSPVVVQNFVKSHLE-S----------LSEEE-KLTLKAKTGLPIPLVRLRVADEEGRPVPKDGKA 382 (541)
T ss_dssp T-TCEEEEEEECGGGSSEEEECCCCGGGT-T----------SCHHH-HHHHHTSCBEECTTCEEEEECTTSCBCCSSSCC
T ss_pred h-CCceeecccccccccceeccccccccc-c----------cCccc-cccccCCCCCcCCCcEEEEECCCCCCCCCCCCc
Confidence 7 899999999999987655432211000 0 00000 000234699999999999999751 35
Q ss_pred eeEEEEcCcchhhhhhhcccCCCCccCCCceEeccceEEEcCCCcEEEeeccCceeeeCceeeChHHHHHHHhcCCCcce
Q 019921 154 VGRILTRGAHVMLRYWDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIG 233 (334)
Q Consensus 154 ~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~ 233 (334)
.|||+|+|++++.||+++++.+...|..+|||+|||+|++++||+++|+||.||+||++|++|+|.+||++|.+||+|.+
T Consensus 383 ~GEl~v~g~~v~~GY~~~p~~t~~~f~~~g~~~TGDlg~~d~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~ 462 (541)
T 1v25_A 383 LGEVQLKGPWITGGYYGNEEATRSALTPDGFFRTGDIAVWDEEGYVEIKDRLKDLIKSGGEWISSVDLENALMGHPKVKE 462 (541)
T ss_dssp CEEEEEESTTSBSSCBTCHHHHHTTBCTTSCEEEEEEEEECTTCCEEEEEESSCEEEETTEEEEHHHHHCC---------
T ss_pred ceEEEEeCcchhccccCChhhhhhhccCCCCeEcCCEEEEcCCceEEEeecccceeeeCCEEECHHHHHHHHHhCCCceE
Confidence 89999999999999999999999888879999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEecCcceeEEEEEEEeccCccccccccccccchhhhhccHHHHHHHHHhcCCCCcccceEEEeccCCccCCCCCc
Q 019921 234 IVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGK 313 (334)
Q Consensus 234 ~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GK 313 (334)
++|++++++..++.++++|++... ..+.+++++++++..++.|++|+.++++ ++||+|++||
T Consensus 463 a~Vv~~~~~~~~~~~~a~vv~~~~-----------------~~~~~~l~~~~~~~~L~~~~~P~~i~~v-~~lP~t~~GK 524 (541)
T 1v25_A 463 AAVVAIPHPKWQERPLAVVVPRGE-----------------KPTPEELNEHLLKAGFAKWQLPDAYVFA-EEIPRTSAGK 524 (541)
T ss_dssp -CEEEEECSSSSEEEEECC------------------------------------CCCTTTSCSBC--------------
T ss_pred EEEEEecCCCcCceEEEEEEECCC-----------------CCCHHHHHHHHHhccCccccCCcEEEEe-CCCCCCCccC
Confidence 999999999888889999886521 1334667777777459999999998765 7899999999
Q ss_pred cchHHHHHHHHhhccc
Q 019921 314 IRRDEVRREVMSHLKS 329 (334)
Q Consensus 314 v~r~~l~~~~~~~~~~ 329 (334)
++|++|++.+.+.+++
T Consensus 525 i~r~~L~~~~~~~~~~ 540 (541)
T 1v25_A 525 FLKRALREQYKNYYGG 540 (541)
T ss_dssp -CCTTHHHHSTTSSCC
T ss_pred eeHHHHHHHHHHhhCC
Confidence 9999999998877654
No 15
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*
Probab=100.00 E-value=2.2e-49 Score=373.94 Aligned_cols=278 Identities=26% Similarity=0.396 Sum_probs=227.6
Q ss_pred ceeeccceEEEcCCCCHHHHHHHHHhhcceEEEechHHHHHHHHHHhhcc-ccCCCCCccEEEeccCCCCHHHHHHHHhh
Q 019921 2 AMLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKK-TWKGRDSVKKILNGGGGLPSELMKEATNS 80 (334)
Q Consensus 2 ~~l~~G~~~v~~~~~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~~-~~~~~~~lr~i~~gG~~l~~~~~~~~~~~ 80 (334)
.++..|+++++.+.+++..+++.+ ++++|+++++|+++..+++...... ....++++|.+++||+++++++.+++.+.
T Consensus 217 ~~l~~G~~~~~~~~~~~~~~~~~i-~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~lr~i~~gg~~l~~~~~~~~~~~ 295 (505)
T 3nyq_A 217 GPLRRGGSVRHLGRFSTEGAAREL-NDGATMLFGVPTMYHRIAETLPADPELAKALAGARLLVSGSAALPVHDHERIAAA 295 (505)
T ss_dssp HHHHHTCEEEECSSCCHHHHHHHH-TTTCCEEEECHHHHHHHHHHGGGCHHHHHHHHHCSEEEECSSCCCHHHHHHHHHH
T ss_pred HHHhcCCEEEECCCCChHHHHHHH-hhCCeEEEehHHHHHHHHHhhhcCchhhcccccceEEEECCCCCCHHHHHHHHHh
Confidence 467899999999999999999999 8899999999999999987543221 11235789999999999999999999998
Q ss_pred CCCCceEcccccccccccccccccCCCCCCCCCCCCCcccCCCCCCCCCCCceeeccccCcceEEEeeCC--------CC
Q 019921 81 FPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG--------SS 152 (334)
Q Consensus 81 ~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~~~~--------~g 152 (334)
+ ++++++.||+||++..++...... ....++|+|+++++++++|++ .|
T Consensus 296 ~-~~~~~~~YG~TE~~~~~~~~~~~~-----------------------~~~~~vG~p~~~~~~~i~d~~g~~~~~~~~g 351 (505)
T 3nyq_A 296 T-GRRVIERYGMTETLMNTSVRADGE-----------------------PRAGTVGVPLPGVELRLVEEDGTPIAALDGE 351 (505)
T ss_dssp H-SCCCEEEEEETTTEEEEECCTTSC-----------------------CCTTCCCEECTTCEEEEC-----CCCCCCSC
T ss_pred c-CCeeecccchhhcccccccCCCCC-----------------------CCCCCcccCCCCCEEEEECCCCCCcccCCCC
Confidence 8 899999999999986544322111 023369999999999999875 27
Q ss_pred ceeEEEEcCcchhhhhhhcccCCCCccCCCceEeccceEEEcCCCcEEEeecc-CceeeeCceeeChHHHHHHHhcCCCc
Q 019921 153 HVGRILTRGAHVMLRYWDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRR-NGRIKSGGENVYPEEVEAVLLQHPGI 231 (334)
Q Consensus 153 ~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~-~d~i~~~G~~v~~~~iE~~l~~~~~v 231 (334)
+.|||+|+|++++.||+++++.+...|..++||+|||+|++++||+++++||. ||+||++|++|+|.+||++|.+||+|
T Consensus 352 ~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~y~TGDl~~~~~dG~l~~~GR~~d~~ik~~G~~v~~~eIE~~l~~~p~V 431 (505)
T 3nyq_A 352 SVGEIQVRGPNLFTEYLNRPDATAAAFTEDGFFRTGDMAVRDPDGYVRIVGRKATDLIKSGGYKIGAGEIENALLEHPEV 431 (505)
T ss_dssp CCEEEEEESTTSCCEETTCHHHHHHTBCTTSCEEEEEEEEECTTSCEEEEEESSCCCEEETTEEECHHHHHHHHTTSTTE
T ss_pred ceEEEEEecCchhhhhCCChhHhhhhhcCCCCCccCCeEEECCCccEEEeCCccCceEEeCCEEECHHHHHHHHHHCcCc
Confidence 88999999999999999999999999988999999999999999999999998 59999999999999999999999999
Q ss_pred ceEEEEEEecCcceeEEEEEEEeccCccccccccccccchhhhhccHHHHHHHHHhcCCCCcccceEEEeccCCccCCCC
Q 019921 232 IGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTST 311 (334)
Q Consensus 232 ~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~ 311 (334)
.+++|++.+++..++.++++|++.+.. .....++|++++++ .++.|++|+.++++ ++||+|++
T Consensus 432 ~~a~Vv~~~~~~~g~~l~a~vv~~~~~---------------~~~~~~~l~~~l~~-~L~~~~~P~~i~~v-~~lP~t~~ 494 (505)
T 3nyq_A 432 REAAVTGEPDPDLGERIVAWIVPADPA---------------APPALGTLADHVAA-RLAPHKRPRVVRYL-DAVPRNDM 494 (505)
T ss_dssp EEEEEEEEEETTTEEEEEEEEEESSTT---------------SCCCHHHHHHHHHH-HTCGGGSCSEEEEC-SCCCC---
T ss_pred cEEEEEeeECCCCCcEEEEEEEECCCC---------------CCCCHHHHHHHHHh-hCCCCcCccEEEEE-CCCCCCCC
Confidence 999999999998899999999987531 12456889999999 79999999998775 88999999
Q ss_pred CccchHHHHH
Q 019921 312 GKIRRDEVRR 321 (334)
Q Consensus 312 GKv~r~~l~~ 321 (334)
||++|++|++
T Consensus 495 GKi~r~~L~~ 504 (505)
T 3nyq_A 495 GKIMKRALNR 504 (505)
T ss_dssp ----------
T ss_pred cCeeHHhhcc
Confidence 9999999986
No 16
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=100.00 E-value=1.2e-48 Score=377.49 Aligned_cols=286 Identities=24% Similarity=0.365 Sum_probs=250.7
Q ss_pred ceeeccceEEEcCCCCHHHHHHHHHhhcceEEEechHHHHHHHHHHhhccccCCCCCccEEEeccCCCCHHHHHHHHhhC
Q 019921 2 AMLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSF 81 (334)
Q Consensus 2 ~~l~~G~~~v~~~~~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~ 81 (334)
.+++.|+++++.+..++..+++.++++++|++.++|+++..+++..........+++||.+++||+++++++.+++.+.+
T Consensus 247 ~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~ 326 (617)
T 3rg2_A 247 GVFLAGGTVVLAADPSATLCFPLIEKHQVNVTALVPPAVSLWLQALIEGESRAQLASLKLLQVGGARLSATLAARIPAEI 326 (617)
T ss_dssp HHHHHTCEEEECSSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHTTCCTTTTTTCCEEEEESSCCCHHHHHHHHHHT
T ss_pred HHHHcCCEEEEeCCCCHHHHHHHHHHhCCcEEEcchHHHHHHHHhhhcccccccCCCccEEEEcCCcCCHHHHHHHHHHh
Confidence 46788999999998999999999999999999999999999988766544434688999999999999999999999998
Q ss_pred CCCceEcccccccccccccccccCCCCCCCCCCCCCcccCCCCCCCCCCCceeecccc-CcceEEEeeCC-----CCcee
Q 019921 82 PKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPA-PHVELKVCSDG-----SSHVG 155 (334)
Q Consensus 82 ~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~-~~~~~~i~~~~-----~g~~G 155 (334)
++++++.||+||++..++....... ....++|.|+ ++.+++++|++ .|+.|
T Consensus 327 -~~~~~~~YG~tE~~~~~~~~~~~~~----------------------~~~~~~G~p~~~~~~~~i~d~~~~~~p~G~~G 383 (617)
T 3rg2_A 327 -GCQLQQVFGMAEGLVNYTRLDDSAE----------------------KIIHTQGYPMCPDDEVWVADAEGNPLPQGEVG 383 (617)
T ss_dssp -CSEEEEEEEETTEEEEECCTTSCHH----------------------HHHHCCCEESCTTCEEEEECTTSCBCCTTCCE
T ss_pred -CCcEEEEeccCcceeecccCCCccc----------------------ccccCCCccCCCCceEEEECCCCCCCCCCCce
Confidence 8999999999998854332211100 0223589997 78899999876 68889
Q ss_pred EEEEcCcchhhhhhhcccCCCCccCCCceEeccceEEEcCCCcEEEeeccCceeeeCceeeChHHHHHHHhcCCCcceEE
Q 019921 156 RILTRGAHVMLRYWDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIV 235 (334)
Q Consensus 156 el~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~ 235 (334)
||+|+|+++++||+++++.+...|..++||+|||++++++||+++++||.||+||++|++|+|.+||++|.+||+|.+++
T Consensus 384 El~i~G~~v~~GY~~~p~~t~~~f~~~~~yrTGDl~~~~~dG~l~~~GR~dd~iki~G~ri~~~eIE~~l~~~p~V~~a~ 463 (617)
T 3rg2_A 384 RLMTRGPYTFRGYYKSPQHNASAFDANGFYCSGDLISIDPEGYITVQGREKDQINRGGEKIAAEEIENLLLRHPAVIYAA 463 (617)
T ss_dssp EEEEECSSSCSCCTTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEECSSEEEETTEEEEHHHHHHHHTTSTTEEEEE
T ss_pred EEEecCccccchhcCChhhhhhccCCCCceecCceEEEcCCceEEEEeecCCEEEECCEEeCHHHHHHHHHhCCCeeEEE
Confidence 99999999999999999999999989999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCcceeEEEEEEEeccCccccccccccccchhhhhccHHHHHHHHHhcCCCCcccceEEEeccCCccCCCCCccc
Q 019921 236 VVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIR 315 (334)
Q Consensus 236 v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GKv~ 315 (334)
|++.+++..++.++++++..+. ....++++++++..++.|++|..++++ ++||+|++||++
T Consensus 464 vv~~~~~~~~~~~~a~vv~~~~------------------~~~~~l~~~l~~~~lp~~~vP~~~~~v-~~lP~t~~GKid 524 (617)
T 3rg2_A 464 LVSMEDELMGEKSCAYLVVKEP------------------LRAVQVRRFLREQGIAEFKLPDRVECV-DSLPLTAVGKVD 524 (617)
T ss_dssp EEEEEETTTEEEEEEEEEESSC------------------CCHHHHHHHHHTTTCCGGGSCSEEEEC-SCCCBCTTSSBC
T ss_pred EEeccCcccCeeEEEEEEeCCC------------------CCHHHHHHHHHhCCCccccCCcEEEEe-cccCCCCCCCCc
Confidence 9999998888899999987764 456788899888569999999999875 889999999999
Q ss_pred hHHHHHHHHhhccc
Q 019921 316 RDEVRREVMSHLKS 329 (334)
Q Consensus 316 r~~l~~~~~~~~~~ 329 (334)
|++|++++.+....
T Consensus 525 R~~L~~~~~~~~~~ 538 (617)
T 3rg2_A 525 KKQLRQWLASRASA 538 (617)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccc
Confidence 99999988776543
No 17
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=100.00 E-value=3.3e-49 Score=383.57 Aligned_cols=299 Identities=19% Similarity=0.260 Sum_probs=241.6
Q ss_pred ceeeccceEEEcCC----CCHHHHHHHHHhhcceEEEechHHHHHHHHHHhhccccCCCCCccEEEeccCCCCHHHHHHH
Q 019921 2 AMLMVGACHVFIPK----FESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEA 77 (334)
Q Consensus 2 ~~l~~G~~~v~~~~----~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~ 77 (334)
.+|++|++++++++ +++..+++.|+++++|+++++|++++.|.+.........++++||.+++||+++++++++++
T Consensus 325 ~~L~~G~t~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~~~~~~l~sLr~i~~gGe~l~~~~~~~~ 404 (663)
T 1ry2_A 325 GPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGDSYIENHSLKSLRCLGSVGEPIAAEVWEWY 404 (663)
T ss_dssp HHHHHTSEEEEECSCTTSSCTTHHHHHHHHTTCSEEEECHHHHHHHTTSCTTSSSSCCCTTCCEEEECSSCCCHHHHHHH
T ss_pred HHHHhCCEEEEECCCCCCCCHHHHHHHHHHcCCCEEEecHHHHHHHHhcCccccccCCcCceEEEEEEcCCCCHHHHHHH
Confidence 56889999999874 58999999999999999999999999887654322222357899999999999999999999
Q ss_pred HhhCC--CCceEcccccccccccccccccCCCCCCCCCCCCCcccCCCCCCCCCCCceeeccccCcceEEEeeC-C----
Q 019921 78 TNSFP--KAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSD-G---- 150 (334)
Q Consensus 78 ~~~~~--~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~~~-~---- 150 (334)
.+.++ ++++++.||+||+++.++........ ..+++++|.|+++++++|+|+ +
T Consensus 405 ~~~~g~~~~~i~~~YG~TE~~~~~~~~~~~~~~--------------------~~~~gs~G~p~~g~~v~i~d~~~g~~v 464 (663)
T 1ry2_A 405 SEKIGKNEIPIVDTYWQTESGSHLVTPLAGGVT--------------------PMKPGSASFPFFGIDAVVLDPNTGEEL 464 (663)
T ss_dssp HHTTSCSSSCEEECBCCTTTCSCSEECCTTTCC--------------------CCCTTCCCEECTTCCEEEECSSSTTCE
T ss_pred HHHhCCCCceEEEeECCccccCeeeccCCCCCc--------------------ccCCCccccCcCCCeEEEEcCCCCCcC
Confidence 99883 28999999999998765543221100 013457999999999999997 3
Q ss_pred -C-CceeEEEEcC--cchhhhhhhcccCCCCccC--CCceEeccceEEEcCCCcEEEeeccCceeeeCceeeChHHHHHH
Q 019921 151 -S-SHVGRILTRG--AHVMLRYWDQFLAKPSVST--GEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAV 224 (334)
Q Consensus 151 -~-g~~Gel~v~g--~~~~~gy~~~~~~~~~~~~--~~~~~~TGDl~~~~~~G~l~~~GR~~d~i~~~G~~v~~~~iE~~ 224 (334)
. |+.|||+++| |+++.|||++++.+...+. .+|||+|||+|++++||+++|+||.||+||++|++|+|.+||++
T Consensus 465 ~~~g~~Gel~i~g~~p~~~~gy~~~~~~~~~~~~~~~~g~y~TGDlg~~d~dG~l~i~GR~dd~Ik~~G~rI~~~eIE~~ 544 (663)
T 1ry2_A 465 NTSHAEGVLAVKAAWPSFARTIWKNHDRYLDTYLNPYPGYYFTGDGAAKDKDGYIWILGRVDDVVNVSGHRLSTAEIEAA 544 (663)
T ss_dssp ECSSCEEEEEESSCCTTSCCEETTCHHHHHHHHTSSSTTSEEEEEEEEECTTCCEEECSCTTSCBCSSSCCBCHHHHHHH
T ss_pred CCCCcceEEEEecCCCchhcccccChHHHHHhhhcCCCCEEEcCCEEEEcCCCCEEEEeecCCEEEECCEEcCHHHHHHH
Confidence 2 7889999999 5899999999987665543 37899999999999999999999999999999999999999999
Q ss_pred HhcCCCcceEEEEEEecCcceeEEEEEEEeccCccccccccccccchhhhhccHHHHHHHHHhcCCCCcccceEEEeccC
Q 019921 225 LLQHPGIIGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRK 304 (334)
Q Consensus 225 l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~ 304 (334)
|.+||.|.+++|++.+++..++.++++|+++++..... ...+......++|++++++ .++.|++|+.++++ +
T Consensus 545 l~~~p~V~ea~Vvg~~~~~~g~~~~a~Vv~~~~~~~~~------~~~~~~~~l~~~l~~~l~~-~L~~~~~P~~i~~v-~ 616 (663)
T 1ry2_A 545 IIEDPIVAECAVVGFNDDLTGQAVAAFVVLKNKSSWST------ATDDELQDIKKHLVFTVRK-DIGPFAAPKLIILV-D 616 (663)
T ss_dssp HHSSTTEEEEEEECCCCCTTSCCCEEEEEEC------------------CCSHHHHHHHHHHH-HTCTTTSCSEEEEC-S
T ss_pred HHhCCCcceEEEEEEecCCCCeEEEEEEEEcCCCcccc------ccchhHHHHHHHHHHHHHH-hCCCCcCCeEEEEc-C
Confidence 99999999999999999888889999999876521000 0000011235789999999 79999999998875 7
Q ss_pred CccCCCCCccchHHHHHHHHhhcc
Q 019921 305 PFPLTSTGKIRRDEVRREVMSHLK 328 (334)
Q Consensus 305 ~lP~t~~GKv~r~~l~~~~~~~~~ 328 (334)
.||+|++|||+|+.|++.+.++++
T Consensus 617 ~lP~T~sGKi~R~~L~~~~~~~~~ 640 (663)
T 1ry2_A 617 DLPKTRSGKIMRRILRKILAGESD 640 (663)
T ss_dssp CCCBCTTSCBCHHHHHHSCC----
T ss_pred CCCCCCccCchHHHHHHHHcCCCC
Confidence 899999999999999998877643
No 18
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=100.00 E-value=1e-48 Score=374.29 Aligned_cols=286 Identities=22% Similarity=0.270 Sum_probs=242.8
Q ss_pred ceeeccceEEEcC--CCCHHHHHHHHHhhcceEEEechHHHHHHHHHHhhccccCCCCCccEEEeccCCCCHHHHHHHHh
Q 019921 2 AMLMVGACHVFIP--KFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATN 79 (334)
Q Consensus 2 ~~l~~G~~~v~~~--~~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~ 79 (334)
.++..|+++++.+ .+++..+++.++++++|+++++|+++..+.+.. .....+++||.+++||+++++++++++.+
T Consensus 268 ~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~---~~~~~~~~lr~i~~gGe~l~~~~~~~~~~ 344 (570)
T 3c5e_A 268 EPWALGACTFVHLLPKFDPLVILKTLSSYPIKSMMGAPIVYRMLLQQD---LSSYKFPHLQNCVTVGESLLPETLENWRA 344 (570)
T ss_dssp HHHHHTCEEEEECCSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHTSC---TTTCCCTTCCEEEEESSCCCHHHHHHHHH
T ss_pred HHHHhCceEEEecCCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhcc---ccccccccceEEEEcCCcCCHHHHHHHHH
Confidence 3567899999886 689999999999999999999999999887642 12224789999999999999999999999
Q ss_pred hCCCCceEcccccccccccccccccCCCCCCCCCCCCCcccCCCCCCCCCCCceeeccccCcceEEEeeCC-----CCce
Q 019921 80 SFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG-----SSHV 154 (334)
Q Consensus 80 ~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~~~~-----~g~~ 154 (334)
.+ ++++++.||+||++..++...... ...+++|.|+++++++|+|++ .|+.
T Consensus 345 ~~-g~~i~~~YG~TE~~~~~~~~~~~~-----------------------~~~~~vG~p~~~~~v~i~d~~g~~~~~G~~ 400 (570)
T 3c5e_A 345 QT-GLDIRESYGQTETGLTCMVSKTMK-----------------------IKPGYMGTAASCYDVQIIDDKGNVLPPGTE 400 (570)
T ss_dssp HH-SCCCEEEEEETTTEEEEECCTTSC-----------------------CCTTCCCEECTTCCEEEECTTSCBCCTTCC
T ss_pred Hh-CCchhhccchhhcccceecCcccc-----------------------cCCCcccccCCCceEEEECCCCCCCCCCCC
Confidence 88 899999999999986544322110 023369999999999999976 5788
Q ss_pred eEEEEc-----CcchhhhhhhcccCCCCccCCCceEeccceEEEcCCCcEEEeeccCceeeeCceeeChHHHHHHHhcCC
Q 019921 155 GRILTR-----GAHVMLRYWDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHP 229 (334)
Q Consensus 155 Gel~v~-----g~~~~~gy~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~ 229 (334)
|||+++ |++++.||+++++.+...|. ++||+|||++++++||+++|.||.||+||++|++|+|.+||++|.+||
T Consensus 401 GEl~v~~~~~~g~~v~~GY~~~~~~t~~~f~-~~~~~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~V~p~eIE~~l~~~p 479 (570)
T 3c5e_A 401 GDIGIRVKPIRPIGIFSGYVDNPDKTAANIR-GDFWLLGDRGIKDEDGYFQFMGRADDIINSSGYRIGPSEVENALMEHP 479 (570)
T ss_dssp EEEEEECSSBCCTTCCCEETTCHHHHHHTEE-TTEEEEEEEEEECTTSCEEEEEEGGGCEEETTEEECHHHHHHHHHTST
T ss_pred CeeEEeccCCCCchhhccccCChhHhhhhhc-CCccccceeEEEcCCceEEEEecCCCEEEECCEEECHHHHHHHHHhCC
Confidence 999999 99999999999998888774 789999999999999999999999999999999999999999999999
Q ss_pred CcceEEEEEEecCcceeEEEEEEEeccCccccccccccccchhhhhccHHHHHHHHHhcCCCCcccceEEEeccCCccCC
Q 019921 230 GIIGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLT 309 (334)
Q Consensus 230 ~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t 309 (334)
+|.+++|++.+++..++.++++|++.+..... ......++|++++++ .++.|++|+.++++ ++||+|
T Consensus 480 ~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~~~-----------~~~~~~~~l~~~l~~-~L~~~~~P~~i~~v-~~lP~t 546 (570)
T 3c5e_A 480 AVVETAVISSPDPVRGEVVKAFVVLASQFLSH-----------DPEQLTKELQQHVKS-VTAPYKYPRKIEFV-LNLPKT 546 (570)
T ss_dssp TEEEEEEEEEEETTTEEEEEEEEEECGGGTTS-----------CHHHHHHHHHHHHHH-HSCGGGSCSEEEEE-SCCCBC
T ss_pred CcceEEEEeeeCCCCCeEEEEEEEECCcccCc-----------chHHHHHHHHHHHHh-hCccccCCcEEEEe-ccCCCC
Confidence 99999999999988889999999887641100 011346789999998 79999999998875 789999
Q ss_pred CCCccchHHHHHHHHhhcc
Q 019921 310 STGKIRRDEVRREVMSHLK 328 (334)
Q Consensus 310 ~~GKv~r~~l~~~~~~~~~ 328 (334)
++||++|++|++.+...-.
T Consensus 547 ~~GKi~R~~L~~~~~~~s~ 565 (570)
T 3c5e_A 547 VTGKIQRAKLRDKEWKMSG 565 (570)
T ss_dssp TTCCBCHHHHHHHHTC---
T ss_pred CCcCCcHHHHHHHHHhhhh
Confidence 9999999999998765443
No 19
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=100.00 E-value=1.2e-50 Score=386.00 Aligned_cols=282 Identities=25% Similarity=0.416 Sum_probs=156.3
Q ss_pred ceeeccceEEEcCCCCHHHHHHHHHhhcceEEEechHHHHHHHHHHhhccccCCCCCccEEEeccCCCCHHHHHHHHhhC
Q 019921 2 AMLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSF 81 (334)
Q Consensus 2 ~~l~~G~~~v~~~~~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~ 81 (334)
.++..|+++++.+.+++..+++.++++++|+++++|+++..+++....... .+++||.+++||+++++++.+++.+.|
T Consensus 254 ~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~--~~~~lr~i~~gG~~l~~~~~~~~~~~~ 331 (544)
T 3o83_A 254 GVLHAGGCVVMAPNPEPLNCFSIIQRHQVNMASLVPSAVIMWLEKAAQYKD--QIQSLKLLQVGGASFPESLARQVPEVL 331 (544)
T ss_dssp HHHHTTCEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHHHTTTHH--HHTTCCEEEEESSCCCHHHHTHHHHHH
T ss_pred HHHHcCCEEEECCCCCHHHHHHHHHHHCCCEEEechHHHHHHHhchhhccc--cCCcceEEEEcCCCCCHHHHHHHHHHh
Confidence 457789999999999999999999999999999999999999887654332 478999999999999999999999999
Q ss_pred CCCceEcccccccccccccccccCCCCCCCCCCCCCcccCCCCCCCCCCCceeecccc-CcceEEEeeCC-----CCcee
Q 019921 82 PKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPA-PHVELKVCSDG-----SSHVG 155 (334)
Q Consensus 82 ~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~-~~~~~~i~~~~-----~g~~G 155 (334)
++++++.||+||++..++....... ....++|.|+ ++++++++|++ .|+.|
T Consensus 332 -~~~~~~~YG~TE~~~~~~~~~~~~~----------------------~~~~~~G~p~~~~~~~~i~d~~~~~~~~g~~G 388 (544)
T 3o83_A 332 -NCKLQQVFGMAEGLVNYTRLDDSDE----------------------QIFTTQGRPISSDDEIKIVDEQYREVPEGEIG 388 (544)
T ss_dssp -CSEEEEEEECTTSCEEECCTTSCHH----------------------HHHHCCCEESCTTCEEEEECTTSCBCCTTCCE
T ss_pred -CCcEEeeeccccccceeecCCCchh----------------------hccCCCceecCCCcEEEEECCCCCCCCCCCee
Confidence 8999999999998754332211100 0234689996 89999999876 68889
Q ss_pred EEEEcCcchhhhhhhcccCCCCccCCCceEeccceEEEcCCCcEEEeeccCceeeeCceeeChHHHHHHHhcCCCcceEE
Q 019921 156 RILTRGAHVMLRYWDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIV 235 (334)
Q Consensus 156 el~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~ 235 (334)
||+++|++++.||+++++.+...|+.++||+|||+|++++||+++++||.||+||++|++|+|.+||++|.+||+|.+++
T Consensus 389 El~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~ 468 (544)
T 3o83_A 389 MLATRGPYTFCGYYQSPEHNSQVFDEDNYYYSGDLVQRTPDGNLRVVGRIKDQINRGGEKIASEEIEKLILLHPEVMHAA 468 (544)
T ss_dssp EEEEECTTSCSCCTTCHHHHHHHBCTTCCEEEEEEEEECTTSCEEEEEEEC-----------------------------
T ss_pred EEEEecCCcchhhcCChhhhhhhCCCCCCeEcCCEEEEcCCCCEEEEeecCCEEEeCCEEECHHHHHHHHHhCCCccEEE
Confidence 99999999999999999999999988999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCcceeEEEEEEEeccCccccccccccccchhhhhccHHHHHHHHHhcCCCCcccceEEEeccCCccCCCCCccc
Q 019921 236 VVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIR 315 (334)
Q Consensus 236 v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GKv~ 315 (334)
|++++++..++.++++|++.+. ......+++++++..++.|++|+.++++ ++||+|++||++
T Consensus 469 vv~~~~~~~g~~~~a~vv~~~~-----------------~~~~~~l~~~~~~~~l~~~~~P~~i~~v-~~lP~t~~GKi~ 530 (544)
T 3o83_A 469 LVAIVDEQFGEKSCAFIVSRNP-----------------ELKAVVLRRHLMELGIAQYKLPDQIKLI-ESLPLTAVGKVD 530 (544)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEeccCCCCCceEEEEEEeCCC-----------------CCCHHHHHHHHHhCCCCcccCCcEEEEe-ccCCCCCCCCCc
Confidence 9999999888899999887653 1345667778777469999999998775 789999999999
Q ss_pred hHHHHHHHHhh
Q 019921 316 RDEVRREVMSH 326 (334)
Q Consensus 316 r~~l~~~~~~~ 326 (334)
|++|++++.+.
T Consensus 531 r~~L~~~~~~~ 541 (544)
T 3o83_A 531 KKQLRSILNTS 541 (544)
T ss_dssp -----------
T ss_pred HHHHHHHHhhc
Confidence 99999988753
No 20
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*
Probab=100.00 E-value=3.8e-49 Score=374.00 Aligned_cols=296 Identities=21% Similarity=0.291 Sum_probs=237.4
Q ss_pred eeeccceEEEcCC---CCHHHHHHHHHhhcceEEEechHHHHHHHHHHhhccccCCCCCccEEEeccCCCCHHHHHHHHh
Q 019921 3 MLMVGACHVFIPK---FESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATN 79 (334)
Q Consensus 3 ~l~~G~~~v~~~~---~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~ 79 (334)
++..|+++++.+. .++..+++.++++++|++.++|+++..+........ ..+++||.+++||+++++++.+++.+
T Consensus 209 ~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~--~~~~~lr~~~~gG~~l~~~~~~~~~~ 286 (521)
T 3l8c_A 209 TLALGGTLFALPKELVADFKQLFTTIAQLPVGIWTSTPSFADMAMLSDDFCQ--AKMPALTHFYFDGEELTVSTARKLFE 286 (521)
T ss_dssp HHHTTCEEEECCGGGTTCHHHHHHHHHHSCCSEEEECHHHHHHHHTSTTCST--TTCTTCCEEEECSSCCCHHHHHHHHH
T ss_pred HHhcCCEEEEcCHHHhhCHHHHHHHHHHcCCcEEEeCCCHHHHHhhhhcccc--ccCccceEEEEecccCCHHHHHHHHH
Confidence 5778999999876 489999999999999999999999988766543322 35789999999999999999999999
Q ss_pred hCCCCceEcccccccccccccccccCCCCCCCCCCCCCcccCCCCCCCCCCCceeeccccCcceEEEeeCC-----CCce
Q 019921 80 SFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG-----SSHV 154 (334)
Q Consensus 80 ~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~~~~-----~g~~ 154 (334)
.|+++++++.||+||++..++.......... .....++|.|+|+++++|+|++ .|+.
T Consensus 287 ~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~------------------~~~~~~vG~p~~~~~~~i~d~~g~~~~~g~~ 348 (521)
T 3l8c_A 287 RFPSAKIINAYGPTEATVALSAIEITREMVD------------------NYTRLPIGYPKPDSPTYIIDEDGKELSSGEQ 348 (521)
T ss_dssp HCTTCEEEEEECCGGGSSCSEEEEECHHHHH------------------HCSSCEEEEECTTSCEEEECTTSCBCCTTCC
T ss_pred HCCCceEEeCcCccHHhhhhceeeccccccc------------------CCCccccccccCCCEEEEECCCcCCCCCCCc
Confidence 9989999999999999976664432211000 0023369999999999999976 5788
Q ss_pred eEEEEcCcchhhhhhhcccCCCCcc---CCCceEeccceEEEcCCCcEEEeeccCceeeeCceeeChHHHHHHHhcCCCc
Q 019921 155 GRILTRGAHVMLRYWDQFLAKPSVS---TGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGI 231 (334)
Q Consensus 155 Gel~v~g~~~~~gy~~~~~~~~~~~---~~~~~~~TGDl~~~~~~G~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v 231 (334)
|||+|+|++++.||+++++.+...| ++++||+|||+|++++||++++.||.||+||++|++|+|.+||++|.+||.|
T Consensus 349 GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~TGDlg~~d~dG~l~~~GR~~d~i~~~G~~v~p~eIE~~l~~~p~V 428 (521)
T 3l8c_A 349 GEIIVTGPAVSKGYLNNPEKTAEAFFTFKGQPAYHTGDIGSLTEDNILLYGGRLDFQIKYAGYRIELEDVSQQLNQSPMV 428 (521)
T ss_dssp EEEEEESTTSCSCBTTCHHHHHHHEEEETTEEEEEEEEEEEECSSSCEEEEEEGGGBCC-----CBHHHHHHHHHTSTTE
T ss_pred eEEEecccccChhhcCCchHhhccCcCCCCceeeeCCCEEEEeCCCeEEEeCcccceEeECCEEeCHHHHHHHHHcCCCc
Confidence 9999999999999999999888776 5779999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEEEecCc-ceeEEEEEEEeccCccccccccccccchhhhhccHHHHHHHHHhcCCCCcccceEEEeccCCccCCC
Q 019921 232 IGIVVVGIANAR-LTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTS 310 (334)
Q Consensus 232 ~~~~v~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~ 310 (334)
.+++|++.+++. .++.++++|+++++.....+ ......++|++++++ .++.|++|+.++++ ++||+|+
T Consensus 429 ~~a~vv~~~~~~~~~~~~~a~vv~~~~~~~~~~---------~~~~~~~~l~~~l~~-~l~~~~~P~~i~~v-~~lP~t~ 497 (521)
T 3l8c_A 429 ASAVAVPRYNKEHKVQNLLAYIVVKDGVKERFD---------RELELTKAIKASVKD-HMMSYMMPSKFLYR-DSLPLTP 497 (521)
T ss_dssp EEEEEECCCSSSCC---CEEEEEECTTSGGGCS---------SHHHHHHHHHHHSGG-GSCGGGSCSEEEEC-SSCCBCT
T ss_pred ceEEEEEeecCCCCceEEEEEEEecCccccccc---------cchhhHHHHHHHHHh-hCccccCCeEEEEe-cccCCCC
Confidence 999999887653 45778899988875211100 011236789999999 79999999998875 8899999
Q ss_pred CCccchHHHHHHHHhhccc
Q 019921 311 TGKIRRDEVRREVMSHLKS 329 (334)
Q Consensus 311 ~GKv~r~~l~~~~~~~~~~ 329 (334)
+|||+|++|++++.++-++
T Consensus 498 ~GKidr~~L~~~~~~~~~~ 516 (521)
T 3l8c_A 498 NGKIDIKTLINEVNNREGH 516 (521)
T ss_dssp TSSBCHHHHHHHTC-----
T ss_pred CcCccHHHHhhhhhcCCcc
Confidence 9999999999998776544
No 21
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}
Probab=100.00 E-value=1.3e-49 Score=402.42 Aligned_cols=294 Identities=29% Similarity=0.406 Sum_probs=162.5
Q ss_pred ceeeccceEEEcCCCCHHHHHHHHHhhcceEEEechHHHHHHHHHHhhccccCCCCCccEEEeccCCCCHHHHHHHHhhC
Q 019921 2 AMLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSF 81 (334)
Q Consensus 2 ~~l~~G~~~v~~~~~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~ 81 (334)
.++..|+++++.+.+++..+++.++++++|++.++|+++..+.+....... ++++||.+++||+++++++.+++.+.|
T Consensus 291 ~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~--~l~~lr~~~~gg~~l~~~~~~~~~~~~ 368 (979)
T 3tsy_A 291 CGLRVGAAILIMPKFEINLLLELIQRCKVTVAPMVPPIVLAIAKSSETEKY--DLSSIRVVKSGAAPLGKELEDAVNAKF 368 (979)
T ss_dssp HHHHHTCEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHCGGGGTS--CCTTCCEEEESSCCCCSSHHHHHHHHC
T ss_pred HHHhcCcEEEEeCCCCHHHHHHHHHHhCCeEEEcHHHHHHHHHhCccccCC--CccceEEEEEcCCCCCHHHHHHHHHHC
Confidence 357789999999999999999999999999999999999999877654332 588999999999999999999999999
Q ss_pred CCCceEcccccccccccccccccCCCCCCCCCCCCCcccCCCCCCCCCCCceeeccccCcceEEEeeCC------CCcee
Q 019921 82 PKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG------SSHVG 155 (334)
Q Consensus 82 ~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~~~~------~g~~G 155 (334)
|++++++.||+||++.+++.......... ....+++|.|+++++++|+|++ .|+.|
T Consensus 369 ~~~~l~~~YG~TE~~~~~~~~~~~~~~~~------------------~~~~~~~G~p~~~~~~~i~d~~~~~~~~~g~~G 430 (979)
T 3tsy_A 369 PNAKLGQGYGMTEAGPVLAMSLGFAKEPF------------------PVKSGACGTVVRNAEMKIVDPDTGDSLSRNQPG 430 (979)
T ss_dssp TTCEEEECEECGGGCSEEEECGGGSSSCC------------------CCCTTCCCEECSSCEEEEECTTSCCBCCTTCCE
T ss_pred CCCeEEeeechhhhhHHHHhCCCCCCCcc------------------ccCCCCcCcccCCcEEEEEeCCCCCCCCCCCcc
Confidence 99999999999999976554322111100 0133469999999999999954 57889
Q ss_pred EEEEcCcchhhhhhhcccCCCCccCCCceEeccceEEEcCCCcEEEeeccCceeeeCceeeChHHHHHHHhcCCCcceEE
Q 019921 156 RILTRGAHVMLRYWDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIV 235 (334)
Q Consensus 156 el~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~ 235 (334)
||+|+|++++.||+++++.+...|+.++||+|||++++++||+++|+||.||+||++|++|+|.+||++|.+||+|.+++
T Consensus 431 El~i~g~~v~~GY~~~p~~t~~~f~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~~~eIE~~l~~~p~V~~~~ 510 (979)
T 3tsy_A 431 EICIRGHQIMKGYLNNPAATAETIDKDGWLHTGDIGLIDDDDELFIVDRLKELIKYKGFQVAPAELEALLIGHPDITDVA 510 (979)
T ss_dssp EEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEESCC----------------------------
T ss_pred EEEEECCCccccccCChhhhhhhccCCCcEEcCCEEEEcCCceEEEecCCCCEEEECCEEECHHHHHHHHHhCCCcceEE
Confidence 99999999999999999999999988999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCcceeEEEEEEEeccCccccccccccccchhhhhccHHHHHHHHHhcCCCCcccceEEEeccCCccCCCCCccc
Q 019921 236 VVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIR 315 (334)
Q Consensus 236 v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GKv~ 315 (334)
|++++++..++.++++|+..++ ...+.+++++++++ .++.|++|+.++++ ++||+|++|||+
T Consensus 511 Vv~~~~~~~g~~~~a~vv~~~~----------------~~~~~~~l~~~l~~-~l~~~~~p~~i~~v-~~lP~t~~GKi~ 572 (979)
T 3tsy_A 511 VVAMKEEAAGEVPVAFVVKSKD----------------SELSEDDVKQFVSK-QVVFYKRINKVFFT-ESIPKAPSGKIL 572 (979)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEecccCCCcEEEEEEEECCC----------------CCCCHHHHHHHHHH-hcccccCCeEEEEe-CCcCcCCCCCee
Confidence 9999998888899999987664 12456789999999 79999999988765 789999999999
Q ss_pred hHHHHHHHHhhcccCCCC
Q 019921 316 RDEVRREVMSHLKSLPSN 333 (334)
Q Consensus 316 r~~l~~~~~~~~~~l~~~ 333 (334)
|++|++++.+.+.+.|.+
T Consensus 573 r~~L~~~~~~~~~~~~~~ 590 (979)
T 3tsy_A 573 RKDLRAKLANGLGSGMAS 590 (979)
T ss_dssp ----------------CC
T ss_pred HHHHHHHHHhhcCCcccc
Confidence 999999999988877754
No 22
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A
Probab=100.00 E-value=1.1e-49 Score=381.52 Aligned_cols=280 Identities=24% Similarity=0.282 Sum_probs=151.8
Q ss_pred ceeeccceEEEcC--CCCHHHHHHHHHhhcceEEEechHHHHHHHHHHhhccccCCCCCccEEEeccCCCCHHHHHHHHh
Q 019921 2 AMLMVGACHVFIP--KFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATN 79 (334)
Q Consensus 2 ~~l~~G~~~v~~~--~~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~ 79 (334)
.+++.|+++++.+ .+++..+++.++++++|++.++|+++..+.+.... .+++||.+++||+++++++.+++.+
T Consensus 274 ~~l~~G~~~v~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~-----~~~~lr~~~~gG~~l~~~~~~~~~~ 348 (570)
T 4gr5_A 274 GALLFGARCVLQSGQNPDPLEIGELVARHGVTMLQLSASLFNFLVDEVPE-----AFEGVRYAITGGEPASVPHVAKARR 348 (570)
T ss_dssp HHHTTTCEEEECSSSSCCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCGG-----GGTTCSEEEEESSCCCHHHHHHHHH
T ss_pred HHHhcCCEEEEcCCccCCHHHHHHHHHHcCCcEEEecHHHHHHHHhhchh-----hCCCceEEEEecccCCHHHHHHHHH
Confidence 4678899999987 47899999999999999999999999998865322 3778999999999999999999999
Q ss_pred hCCCCceEcccccccccccccccccCCCCCCCCCCCCCcccCCCCCCCCCCCceeeccccCcceEEEeeCC-----CCce
Q 019921 80 SFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG-----SSHV 154 (334)
Q Consensus 80 ~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~~~~-----~g~~ 154 (334)
.++++++++.||+||++++.+.......... ....++|+|+++++++|+|++ .|+.
T Consensus 349 ~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~-------------------~~~~~iG~p~~~~~v~i~d~~~~~~~~G~~ 409 (570)
T 4gr5_A 349 DHPALRLGNGYGPAESMGFTTHHAVVAGDLS-------------------GTALPIGVPLAGKRAYVLDDDLKPAANGAL 409 (570)
T ss_dssp HCTTCEEEEEECCGGGCSCSEEEECCGGGTT-------------------SSSCCCBEECTTEEEEEECTTSCBCCTTCE
T ss_pred hCCCcEEEEeechhhheeeeeeeeecccccC-------------------CCccccceeeCCCEEEEECCCCCCCCCCCc
Confidence 9889999999999999876654432211100 023359999999999999976 6888
Q ss_pred eEEEEcCcchhhhhhhcccCCCCccC--------CCceEeccceEEEcCCCcEEEeeccCceeeeCceeeChHHHHHHHh
Q 019921 155 GRILTRGAHVMLRYWDQFLAKPSVST--------GEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLL 226 (334)
Q Consensus 155 Gel~v~g~~~~~gy~~~~~~~~~~~~--------~~~~~~TGDl~~~~~~G~l~~~GR~~d~i~~~G~~v~~~~iE~~l~ 226 (334)
|||+|+|++++.||+++++.+...|. +++||+|||+|++|+||+++|+||.||+||++|++|+|.+||++|.
T Consensus 410 GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~~~w~~TGDlg~~d~dG~l~~~GR~~d~Ik~~G~~v~p~eIE~~l~ 489 (570)
T 4gr5_A 410 GELYVAGAGLAHGYVSRPALTAERFVADPFAGPGGERMYRTGDLARRRADGVLEYVGRADDQVKIRGFRVEPGEVEARLV 489 (570)
T ss_dssp EEEEEEETTCCCEETTCHHHHHHHEEECTTCCSSCCEEEEEEEEEEECTTSCEEEEEC----------------------
T ss_pred EEEEEeecccchhcCCCchhhhcccccCCCCCCCCCEEEeCCCeEEECCCCeEEEEcccCCEEEECcEEeCHHHHHHHHh
Confidence 99999999999999999988776663 3489999999999999999999999999999999999999999999
Q ss_pred cCCCcceEEEEEEecCcceeEEEEEEEeccCccccccccccccchhhhhccHHHHHHHHHhcCCCCcccceEEEeccCCc
Q 019921 227 QHPGIIGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPF 306 (334)
Q Consensus 227 ~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~l 306 (334)
+||.|.+++|++.+++..++.++++|++.... ...+.++|++++++ .++.|++|+.++++ ++|
T Consensus 490 ~~p~V~~a~Vv~~~~~~~~~~~~a~vv~~~~~---------------~~~~~~~l~~~l~~-~l~~~~~P~~i~~v-~~l 552 (570)
T 4gr5_A 490 GHPAVRQAAVLAQDSRLGDKQLVAYVVAERAD---------------APPDAAELRRHVAE-ALPAYMVPVECVPV-DEL 552 (570)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCCCcceEEEEEeeCCCCCeEEEEEEEecCCC---------------CCcCHHHHHHHHHh-hCccccCCcEEEEc-ccC
Confidence 99999999999999888888899998876530 12456789999999 79999999998765 789
Q ss_pred cCCCCCccchHHHHHH
Q 019921 307 PLTSTGKIRRDEVRRE 322 (334)
Q Consensus 307 P~t~~GKv~r~~l~~~ 322 (334)
|+|++|||+|++|++.
T Consensus 553 P~t~~GKi~R~~L~~~ 568 (570)
T 4gr5_A 553 PRTPNGKLDRRALTGS 568 (570)
T ss_dssp ----------------
T ss_pred CCCCCcCcchHhhhcc
Confidence 9999999999999875
No 23
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=100.00 E-value=3.2e-48 Score=370.36 Aligned_cols=271 Identities=25% Similarity=0.339 Sum_probs=233.9
Q ss_pred ceeeccceEEEcCC---CCHHHHHHHHHhhcceEEEechHHHHHHHHHHhhccccCCCCCccEEEeccCCCCHHHHHHHH
Q 019921 2 AMLMVGACHVFIPK---FESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEAT 78 (334)
Q Consensus 2 ~~l~~G~~~v~~~~---~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~ 78 (334)
.+++.|+++++.+. .++..+++.++++++|+++++|+++..+... .+++||.+++||+++++++++++.
T Consensus 243 ~~l~~G~~~v~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~--------~~~~lr~~~~gG~~l~~~~~~~~~ 314 (563)
T 1amu_A 243 MALLTGASLYIILKDTINDFVKFEQYINQKEITVITLPPTYVVHLDPE--------RILSIQTLITAGSATSPSLVNKWK 314 (563)
T ss_dssp HHHTTTCEEEECCHHHHTCHHHHHHHHHHTTCCEEEECHHHHTTSCTT--------TCCSCSEEEEESSCCCHHHHHHHT
T ss_pred HHHHCCCEEEEcChHhhcCHHHHHHHHHHcCCcEEEeCHHHHHHHHhc--------ccccccEEEEEEecCCHHHHHHHH
Confidence 46789999999876 6899999999999999999999998766321 367899999999999999999997
Q ss_pred hhCCCCceEcccccccccccccccccCCCCCCCCCCCCCcccCCCCCCCCCCCceeeccccCcceEEEeeCC-----CCc
Q 019921 79 NSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG-----SSH 153 (334)
Q Consensus 79 ~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~~~~-----~g~ 153 (334)
+ .+++++.||+||++..++......... ....++|+|+|+++++|+|++ .|+
T Consensus 315 ~---~~~~~~~YG~TE~~~~~~~~~~~~~~~--------------------~~~~~vG~p~~~~~v~i~d~~~~~~~~g~ 371 (563)
T 1amu_A 315 E---KVTYINAYGPTETTICATTWVATKETI--------------------GHSVPIGAPIQNTQIYIVDENLQLKSVGE 371 (563)
T ss_dssp T---TSEEEEEECCGGGSSCSEEEECCSSCC--------------------CSSCCCBEECTTEEEEEECTTSCBCCTTC
T ss_pred h---CCeEEEEECcCHHhHhheeeecccccC--------------------CCCCcccceeCCCEEEEECCCcCCCCCCC
Confidence 7 478999999999987655443221110 023469999999999999976 578
Q ss_pred eeEEEEcCcchhhhhhhcccCCCCccC------CCceEeccceEEEcCCCcEEEeeccCceeeeCceeeChHHHHHHHhc
Q 019921 154 VGRILTRGAHVMLRYWDQFLAKPSVST------GEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQ 227 (334)
Q Consensus 154 ~Gel~v~g~~~~~gy~~~~~~~~~~~~------~~~~~~TGDl~~~~~~G~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~ 227 (334)
.|||+|+|++++.||+++++.+...|. +++||+|||+|++++||+++|+||.||+||++|++|+|.+||++|.+
T Consensus 372 ~GEl~v~g~~v~~GY~~~pe~t~~~f~~~~~~~g~~w~~TGDlg~~d~dG~l~i~GR~~d~Ik~~G~~V~p~eIE~~l~~ 451 (563)
T 1amu_A 372 AGELCIGGEGLARGYWKRPELTSQKFVDNPFVPGEKLYKTGDQARWLSDGNIEYLGRIDNQVKIRGHRVELEEVESILLK 451 (563)
T ss_dssp EEEEEEEETTCCCEETTCHHHHHHHEEECSSSTTSEEEEEEEEEEECTTSCEEEEEEGGGEEEETTEEEEHHHHHHHHTT
T ss_pred cEEEEEechhhChhhCCCchhhhhhcccCCCCCCCEEEecCCEEEEcCCCeEEEeccccCEEEECCEEeCHHHHHHHHHh
Confidence 999999999999999999987766652 45799999999999999999999999999999999999999999999
Q ss_pred CCCcceEEEEEEecCcceeEEEEEEEeccCccccccccccccchhhhhccHHHHHHHHHhcCCCCcccceEEEeccCCcc
Q 019921 228 HPGIIGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFP 307 (334)
Q Consensus 228 ~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP 307 (334)
||+|.+++|++.+++..++.++++|+.... .+.++|++++++ .++.|++|+.++++ ++||
T Consensus 452 ~p~V~~a~Vv~~~~~~~~~~~~a~vv~~~~------------------~~~~~l~~~l~~-~L~~y~~P~~i~~v-~~lP 511 (563)
T 1amu_A 452 HMYISETAVSVHKDHQEQPYLCAYFVSEKH------------------IPLEQLRQFSSE-ELPTYMIPSYFIQL-DKMP 511 (563)
T ss_dssp STTEEEEEEEEEECTTSCEEEEEEEEESSC------------------CCHHHHHHHHHH-HSCGGGSCSEEEEC-SSCC
T ss_pred CCCcceEEEEEeecCCCCeEEEEEEEeCCC------------------CCHHHHHHHHHh-hCchhhCCcEEEEe-cccC
Confidence 999999999999998888889999886543 456789999999 79999999998875 7899
Q ss_pred CCCCCccchHHHHHHH
Q 019921 308 LTSTGKIRRDEVRREV 323 (334)
Q Consensus 308 ~t~~GKv~r~~l~~~~ 323 (334)
+|++||++|++|++..
T Consensus 512 ~t~~GKi~r~~L~~~~ 527 (563)
T 1amu_A 512 LTSNGKIDRKQLPEPD 527 (563)
T ss_dssp BCTTSSBCGGGSCCCC
T ss_pred CCCCcChhHHhcCCcc
Confidence 9999999999998653
No 24
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*
Probab=100.00 E-value=8.7e-48 Score=370.73 Aligned_cols=278 Identities=20% Similarity=0.318 Sum_probs=227.1
Q ss_pred ceeeccceEEEcC--CCCHHHHHHHHHhhcceEEEechHHHHHHHHHHhhccccCCCCCccEEEeccCCCCHHHHHHHHh
Q 019921 2 AMLMVGACHVFIP--KFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATN 79 (334)
Q Consensus 2 ~~l~~G~~~v~~~--~~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~ 79 (334)
.+|++|+++++.+ .+++..+++.++++++|+++++|+++..+.+... ..+++||.+++||+++++++.+++.+
T Consensus 224 ~~l~~G~~~v~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~-----~~l~~lr~v~~gGe~l~~~~~~~~~~ 298 (620)
T 4dg8_A 224 GALLNGGCCVLNDLGPLDPGVLRQLIGERGADSAWLTASLFNTLVDLDP-----DCLGGLRQLLTGGDILSVPHVRRALL 298 (620)
T ss_dssp HHHTTTCEEEECCSSSCCHHHHHHHHHTTCCCEEEEEHHHHHHHHHHCG-----GGGTTCSEEEEESSCCCHHHHHHHHH
T ss_pred HHHhcCCEEEeCccccCCHHHHHHHHHHhCCcEEEccHHHHHHHHhcCh-----hhCCCccEEEEEeCcCCHHHHHHHHH
Confidence 5788999999964 5899999999999999999999999999876422 24778999999999999999999988
Q ss_pred hCCCCceEcccccccccccccccccCCCCCCCCCCCCCcccCCCCCCCCCCCceeeccccCcceEEEeeCC------CCc
Q 019921 80 SFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG------SSH 153 (334)
Q Consensus 80 ~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~~~~------~g~ 153 (334)
.++++++++.||+||++.+++.......... ....++|+|+++++++|+|++ .|+
T Consensus 299 ~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~-------------------~~~~~iG~p~~~~~~~i~d~~~~~~~~~g~ 359 (620)
T 4dg8_A 299 RHPRLHLVNGYGPTENTTFTCCHVVTDDDLE-------------------EDDIPIGKAIAGTAVLLLDEHGQEIAEPDR 359 (620)
T ss_dssp HCTTCEEEEEECCGGGCSCSEEEECCTGGGG-------------------SSSCCCBEECTTEEEEEECTTSCBCCSSSC
T ss_pred hCCCeEEEeeEchhhhhhheEEEeccccccC-------------------CCCCCceecccCcEEEEECccCCCCCCCCC
Confidence 8889999999999999976654433221110 023469999999999999975 477
Q ss_pred eeEEEEcCcchhhhhhhcccCCCCccCCC-------ceEeccceEEEcCCCcEEEeeccCceeeeCceeeChHHHHHHHh
Q 019921 154 VGRILTRGAHVMLRYWDQFLAKPSVSTGE-------VWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLL 226 (334)
Q Consensus 154 ~Gel~v~g~~~~~gy~~~~~~~~~~~~~~-------~~~~TGDl~~~~~~G~l~~~GR~~d~i~~~G~~v~~~~iE~~l~ 226 (334)
.|||+|+|+++++||+++++.+...|..+ +||+|||++++++||+++|+||.||+||++|++|+|.+||++|.
T Consensus 360 ~GEl~i~G~~v~~GY~~~p~~t~~~f~~~p~~~~~~~~yrTGDl~~~~~dG~l~~~GR~dd~Ik~~G~ri~~~eIE~~l~ 439 (620)
T 4dg8_A 360 AGEIVAFGAGLAQGYRNDAARTRASFVELPYRGRLLRAYRTGDRARYDEQGRLRFIGRGDGQVKLNGYRLDLPALEQRFR 439 (620)
T ss_dssp CEEEEEEETTCCSEETTCHHHHHHHEEEEEETTEEEEEEEEEEEEEECTTSCEEEEECSSSEEEETTEEEEHHHHHHHHH
T ss_pred ceEEEEeccccccccCCChhhhhhhhccCCCCCCCceEEeCCCEEEECCCCeEEEEccCCCEEEECCEEcCHHHHHHHHH
Confidence 89999999999999999999888777432 79999999999999999999999999999999999999999999
Q ss_pred cCCCcceEEEEEEecCcceeEEEEEEEeccCccccccccccccchhhhhccHHHHHHHHHhcCCCCcccceEEEeccCCc
Q 019921 227 QHPGIIGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPF 306 (334)
Q Consensus 227 ~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~l 306 (334)
+||+|.+++|++.+++..++.+++++. ... . +.+.+++ .++.|++|..++++ ++|
T Consensus 440 ~~p~V~~a~Vv~~~~~~~~~lv~~~~~-~~~------------------~----~~~~l~~-~Lp~y~~P~~~~~v-~~l 494 (620)
T 4dg8_A 440 RQPGILDCALLVRERNGVKQLLCAWTG-KAD------------------A----SPQALLR-QLPTWQRPHACVRV-EAL 494 (620)
T ss_dssp TSTTEEEEEEEEEEETTEEEEEEEEEE-CTT------------------C----CCHHHHH-HSCGGGSCSEEEEC-SSC
T ss_pred hCCCccEEEEEEEeCCCceEEEEEEec-ChH------------------H----HHHHHHH-hChhhcCCcEEEEE-CcC
Confidence 999999999999988765554544442 221 1 1233555 59999999999875 889
Q ss_pred cCCCCCccchHHHHHHHHhhcc
Q 019921 307 PLTSTGKIRRDEVRREVMSHLK 328 (334)
Q Consensus 307 P~t~~GKv~r~~l~~~~~~~~~ 328 (334)
|+|++||++|++|++.+.+.++
T Consensus 495 P~t~~GKidR~~L~~~~~~~~~ 516 (620)
T 4dg8_A 495 PLTAHGKLDRAALLRRLEEPLE 516 (620)
T ss_dssp CCC----CCHHHHHHHTCSCC-
T ss_pred CCCcccCHhHHHHhhccccccc
Confidence 9999999999999988765543
No 25
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=100.00 E-value=2.4e-47 Score=362.20 Aligned_cols=277 Identities=23% Similarity=0.358 Sum_probs=230.9
Q ss_pred ceeeccceEEEc-CCCCHHHHHHHHHhhcceEEEechHHHHHHHHHHhhccccCCCCCccEEEeccCCCCHHHHHHHHhh
Q 019921 2 AMLMVGACHVFI-PKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNS 80 (334)
Q Consensus 2 ~~l~~G~~~v~~-~~~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~ 80 (334)
.++..|++++++ +.+++..+++.++++++|+++++|+++..+++....... ...++|.+++||+++++++.+++.+.
T Consensus 246 ~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~--~~~~lr~~~~gGe~l~~~~~~~~~~~ 323 (529)
T 2v7b_A 246 FPLSVGATAILMAERPTADAIFARLVEHRPTVFYGVPTLYANMLVSPNLPAR--ADVAIRICTSAGEALPREIGERFTAH 323 (529)
T ss_dssp HHHHHTCEEECCCSCCCHHHHHHHHHHSCCSEEEECHHHHHHHHTCTTCCCG--GGCCCCEEEECSSCCCHHHHHHHHHH
T ss_pred HHHhcCcEEEEecCCCCHHHHHHHHHHhCCEEEEecHHHHHHHHhCcccccc--cCCceEEEEEcCCCCCHHHHHHHHHH
Confidence 357789999988 568999999999999999999999999888765332221 12379999999999999999999999
Q ss_pred CCCCceEcccccccccccccccccCCCCCCCCCCCCCcccCCCCCCCCCCCceeeccccCcceEEEeeCC-----CCcee
Q 019921 81 FPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG-----SSHVG 155 (334)
Q Consensus 81 ~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~~~~-----~g~~G 155 (334)
| ++++++.||+||++.+++....... ..+++|.|+++++++++|++ .|+.|
T Consensus 324 ~-g~~i~~~YG~TE~~~~~~~~~~~~~-----------------------~~~~~G~p~~~~~~~i~d~~g~~~~~g~~G 379 (529)
T 2v7b_A 324 F-GCEILDGIGSTEMLHIFLSNRAGAV-----------------------EYGTTGRPVPGYEIELRDEAGHAVPDGEVG 379 (529)
T ss_dssp H-SCCEEEEEECTTTSSEEEECCTTCC-----------------------CTTSCCEECTTCEEEEECTTSCBCCTTSCE
T ss_pred h-CCceeeeEchhhcCceeeccccCCC-----------------------ccCCcccCCCCCEEEEECCCCCCCCCCCcc
Confidence 8 8999999999999765443321110 22369999999999999975 57889
Q ss_pred EEEEcCcchhhhhhhcccCCCCccCCCceEeccceEEEcCCCcEEEeeccCceeeeCceeeChHHHHHHHhcCCCcceEE
Q 019921 156 RILTRGAHVMLRYWDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIV 235 (334)
Q Consensus 156 el~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~ 235 (334)
||+|+|++++.||+++++.+...|. ++||+|||++++++||++++.||.||+||++|++|+|.+||++|.+||+|.+++
T Consensus 380 El~v~g~~~~~gY~~~~~~t~~~f~-~~~~~TGDl~~~~~~G~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~~~ 458 (529)
T 2v7b_A 380 DLYIKGPSAAVMYWNNREKSRATFL-GEWIRSGDKYCRLPNGCYVYAGRSDDMLKVSGQYVSPVEVEMVLVQHDAVLEAA 458 (529)
T ss_dssp EEEEECTTCCCCBTTCHHHHHHHEE-TTEEEEEEEEEECTTSCEEEEEEGGGCBC----CBCHHHHHHHHTTSTTEEEEE
T ss_pred EEEEecCCcccccCCChHHHHHhhh-cCCcccCceEEECCCccEEEeCccCCeEEECCEEECHHHHHHHHHhCCCcceEE
Confidence 9999999999999999998887774 789999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCcceeEEEEEEEeccCccccccccccccchhhhhccHHHHHHHHHhcCCCCcccceEEEeccCCccCCCCCccc
Q 019921 236 VVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIR 315 (334)
Q Consensus 236 v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GKv~ 315 (334)
|++. ++..++.++++|++.+... . .....++|++++++ .++.|++|+.++++ ++||+|++||++
T Consensus 459 vv~~-~~~~~~~~~a~vv~~~~~~--~-----------~~~~~~~l~~~l~~-~L~~~~~P~~i~~v-~~lP~t~~GKi~ 522 (529)
T 2v7b_A 459 VVGV-DHGGLVKTRAFVVLKREFA--P-----------SEILAEELKAFVKD-RLAPHKYPRDIVFV-DDLPKTATGKIQ 522 (529)
T ss_dssp EEEE-EETTEEEEEEEEEECTTCC--C-----------CHHHHHHHHHHHHT-TSCTTTSCSEEEEE-SCCCBCTTSCBC
T ss_pred EEEe-cCCCceEEEEEEEecCCCC--c-----------chhHHHHHHHHHHh-hcchhhCCeEEEEe-ccCCCCCccchh
Confidence 9999 6666788899998776410 0 01134679999999 89999999999876 789999999999
Q ss_pred hHHHHH
Q 019921 316 RDEVRR 321 (334)
Q Consensus 316 r~~l~~ 321 (334)
|++|++
T Consensus 523 r~~L~~ 528 (529)
T 2v7b_A 523 RFKLRE 528 (529)
T ss_dssp HHHHHC
T ss_pred HHhHhh
Confidence 999985
No 26
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=100.00 E-value=9.5e-48 Score=363.37 Aligned_cols=276 Identities=26% Similarity=0.441 Sum_probs=146.4
Q ss_pred eeccceEEEcCCCCHHHHHHHHHhhcceEEEechHHHHHHHHHHhhccccCCCCCccEEEeccCCCCHHHHHHHHhhCCC
Q 019921 4 LMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFPK 83 (334)
Q Consensus 4 l~~G~~~v~~~~~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~ 83 (334)
++.|++.++...+++..+++.++++++|+++++|+++..+++.... ..++++|.++.+|++ ++.+.+.+.+++
T Consensus 223 ~~~~g~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~----~~l~~lr~~~~~g~~---~~~~~~~~~~~~ 295 (509)
T 3ivr_A 223 QQAGGASVIAAKFDPAQAARDIEAHKVTVMAEFAPMLGNILDQAAP----AQLASLRAVTGLDTP---ETIERFEATCPN 295 (509)
T ss_dssp HHHTCEEEECSSCCHHHHHHHHHHHTCCEEEEETTHHHHHHHHCCG----GGGTTCCEEEEECCH---HHHHHHHHHCTT
T ss_pred HHhCCcEEEecccCHHHHHHHHHHHCCcEEEecHHHHHHHHhcccc----cchhhhheecccCCh---HHHHHHHHhcCC
Confidence 3455666666689999999999999999999999999999877521 247789999999987 899999999999
Q ss_pred CceEcccccccccccccccccCCCCCCCCCCCCCcccCCCCCCCCCCCceeeccccCcceEEEeeCC-----CCceeEEE
Q 019921 84 AKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG-----SSHVGRIL 158 (334)
Q Consensus 84 ~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~~~~-----~g~~Gel~ 158 (334)
+++++.||+||++.+++....... ..++|.|+++++++++|++ .|+.|||+
T Consensus 296 ~~~~~~YG~TE~~~~~~~~~~~~~------------------------~~~~G~p~~~~~~~i~d~~~~~~~~g~~GEl~ 351 (509)
T 3ivr_A 296 ATFWATFGQSETSGLSTFAPYRDR------------------------PKSAGRPLFWRTVAVVDAEDRPLPPGEVGEIV 351 (509)
T ss_dssp CEEEEEEEEGGGTEEEEEEEGGGS------------------------TTSCCEECTTCEEEEECTTSCBCCTTCCEEEE
T ss_pred CeEEcccCccccccccccCccccC------------------------CCcccccCCCcEEEEECCCCCCCCCCCceEEE
Confidence 999999999999976665443221 1138999999999999976 57889999
Q ss_pred EcCcchhhhhhhcccCCCCccCCCceEeccceEEEcCCCcEEEeecc--CceeeeCceeeChHHHHHHHhcCCCcceEEE
Q 019921 159 TRGAHVMLRYWDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRR--NGRIKSGGENVYPEEVEAVLLQHPGIIGIVV 236 (334)
Q Consensus 159 v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~--~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v 236 (334)
|+|++++.||+++++.+...|. ++||+|||+|++++||+++++||. ||+||++|++|+|.+||++|.+||+|.+++|
T Consensus 352 v~g~~~~~gY~~~~~~t~~~f~-~g~~~TGDl~~~~~dG~l~~~GR~d~~d~ik~~G~~v~p~eiE~~l~~~p~V~~a~v 430 (509)
T 3ivr_A 352 LRGPTVFKGYWNNAAATQHAFR-NGWHHTGDMGRFDADGYLFYAGRAPEKELIKTGGENVYPAEVEGALKQHPAIADAVV 430 (509)
T ss_dssp EESTTSCCEETTCHHHHHHHTG-GGSEEEEEEEEECTTSCEEEEEEC---------------------------------
T ss_pred EecCCccccccCCHHHhHHHhh-cCCcccccEEEECCCceEEEeCCCCcceeEEECCEEECHHHHHHHHHhCCCceeEEE
Confidence 9999999999999999988884 899999999999999999999999 9999999999999999999999999999999
Q ss_pred EEEecCcceeEEEEEEEeccCccccccccccccchhhhhccHHHHHHHHHhcCCCCcccceEEEeccCCccCCCCCccch
Q 019921 237 VGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRR 316 (334)
Q Consensus 237 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GKv~r 316 (334)
++.+++..++.++++|++.++ ...+.+++++++++ .++.|++|+.++++ ++||+|++|||+|
T Consensus 431 v~~~~~~~~~~~~a~v~~~~~----------------~~~~~~~l~~~l~~-~L~~~~~P~~i~~v-~~lP~t~~GKidr 492 (509)
T 3ivr_A 431 IGVPDPQWSEAIKAVCVCKPG----------------ESIAADALAEFVAS-LIARYKKPKHVVFV-EALPKDAKGAIDR 492 (509)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EeccccccCcEEEEEEEeCCC----------------CCCCHHHHHHHHHh-hCcccCCCcEEEEe-cCCCCCCCCCccH
Confidence 999998888899999987764 12456789999999 79999999988775 8899999999999
Q ss_pred HHHHHHHHhhccc
Q 019921 317 DEVRREVMSHLKS 329 (334)
Q Consensus 317 ~~l~~~~~~~~~~ 329 (334)
++|++++.+.-++
T Consensus 493 ~~Lr~~~~~~~~~ 505 (509)
T 3ivr_A 493 AAVKTAHGQEGHH 505 (509)
T ss_dssp -------------
T ss_pred HHHHHHHhhcccc
Confidence 9999998876543
No 27
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}
Probab=100.00 E-value=8.4e-46 Score=383.66 Aligned_cols=282 Identities=22% Similarity=0.303 Sum_probs=242.3
Q ss_pred ceeeccceEEEcCC---CCHHHHHHHHHhhcceEEEechHHHHHHHHHHhhccccCCCCCccEEEeccCCCCHHHHHHHH
Q 019921 2 AMLMVGACHVFIPK---FESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEAT 78 (334)
Q Consensus 2 ~~l~~G~~~v~~~~---~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~ 78 (334)
.+|++|+++++.+. .++..+++.++++++|+++++|+++..+.+... ..+++||.+++|||++++++++.+.
T Consensus 667 ~~l~~G~~l~~~~~~~~~~~~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~-----~~~~~lr~~~~gGe~l~~~~~~~~~ 741 (1304)
T 2vsq_A 667 ASMLNAARLIIADEHTLLDTERLTDLILQENVNVMFATTALFNLLTDAGE-----DWMKGLRCILFGGERASVPHVRKAL 741 (1304)
T ss_dssp HHHTTTCEEEECCGGGTTCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCS-----HHHHTCSEEEEESSCCCHHHHHHHH
T ss_pred HHHHcCCEEEECChhhcCCHHHHHHHHHHcCCcEEEccHHHHHHHHhhch-----hcCCCccEEEEecCCCCHHHHHHHH
Confidence 56889999999874 789999999999999999999999998876421 1256899999999999999999999
Q ss_pred hhCCCCceEcccccccccccccccccCCCCCCCCCCCCCcccCCCCCCCCCCCceeeccccCcceEEEeeCC-----CCc
Q 019921 79 NSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG-----SSH 153 (334)
Q Consensus 79 ~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~~~~-----~g~ 153 (334)
+.++++++++.||+||++.+++......... .....++|+|+++++++|+|++ .|+
T Consensus 742 ~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~-------------------~~~~~~iG~p~~~~~~~i~d~~~~~~p~G~ 802 (1304)
T 2vsq_A 742 RIMGPGKLINCYGPTEGTVFATAHVVHDLPD-------------------SISSLPIGKPISNASVYILNEQSQLQPFGA 802 (1304)
T ss_dssp HHHCTTCEEEEECCGGGSSCSEEEECCCCCS-------------------SCSSCCCBEECTTEEEEEECTTSCBCCTTC
T ss_pred HhCCCCEEEEeEChhHHhHHheeeeccCccc-------------------cCCCCCCceeeCCCEEEEECCCcCCCCCCC
Confidence 9887789999999999997766544322100 0023369999999999999976 688
Q ss_pred eeEEEEcCcchhhhhhhcccCCCCcc------CCCceEeccceEEEcCCCcEEEeeccCceeeeCceeeChHHHHHHHhc
Q 019921 154 VGRILTRGAHVMLRYWDQFLAKPSVS------TGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQ 227 (334)
Q Consensus 154 ~Gel~v~g~~~~~gy~~~~~~~~~~~------~~~~~~~TGDl~~~~~~G~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~ 227 (334)
.|||+|+|+++++||+++++.|...| .+++||+|||+|++++||.++|+||.||+||++|++|.|.+||++|.+
T Consensus 803 ~GEl~i~G~~v~~GY~~~p~~T~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~d~qvki~G~rie~~eIE~~l~~ 882 (1304)
T 2vsq_A 803 VGELCISGMGVSKGYVNRADLTKEKFIENPFKPGETLYRTGDLARWLPDGTIEYAGRIDDQVKIRGHRIELEEIEKQLQE 882 (1304)
T ss_dssp CEEEEEEETTCCCCBTTCHHHHHHHEEECTTSTTCEEEEEEEEEEECTTSCEEEEEEGGGEEEETTEEEEHHHHHHHHHH
T ss_pred ceEEEEeccccCccccCCcccchhhhccCCCCCCCeeEecCCeEEEcCCCeEEEEcCCCCEEEECCEeeCHHHHHHHHHh
Confidence 99999999999999999998887666 346799999999999999999999999999999999999999999999
Q ss_pred CCCcceEEEEEEecCcceeEEEEEEEeccCccccccccccccchhhhhccHHHHHHHHHhcCCCCcccceEEEeccCCcc
Q 019921 228 HPGIIGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFP 307 (334)
Q Consensus 228 ~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP 307 (334)
+|+|.+++|++.++...++.++++++.... .+.+++++++++ .||.|++|..++++ ++||
T Consensus 883 ~p~V~~a~V~~~~~~~~~~~l~a~vv~~~~------------------~~~~~l~~~l~~-~Lp~ymvP~~~~~l-~~lP 942 (1304)
T 2vsq_A 883 YPGVKDAVVVADRHESGDASINAYLVNRTQ------------------LSAEDVKAHLKK-QLPAYMVPQTFTFL-DELP 942 (1304)
T ss_dssp SSSCCEEEEEEECCSSSCCEEEEEEECSSS------------------SCHHHHHHHHHH-HSCGGGSCSEEEEE-SCCC
T ss_pred CCCCceEEEEEEecCCCCEEEEEEEeCCCC------------------CCHHHHHHHHHH-hChHhhhccEEEEe-cccC
Confidence 999999999999888888889999886543 456789999999 79999999998875 7899
Q ss_pred CCCCCccchHHHHHHHHhhc
Q 019921 308 LTSTGKIRRDEVRREVMSHL 327 (334)
Q Consensus 308 ~t~~GKv~r~~l~~~~~~~~ 327 (334)
+|++|||+|++|.+......
T Consensus 943 ~t~~GKidR~~L~~~~~~~~ 962 (1304)
T 2vsq_A 943 LTTNGKVNKRLLPKPDQDQL 962 (1304)
T ss_dssp CCSSCSSCCSCCCCCCGGGG
T ss_pred CCCCcccCHhhcCCcchhhh
Confidence 99999999999876544433
No 28
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}
Probab=100.00 E-value=6.4e-46 Score=354.94 Aligned_cols=291 Identities=18% Similarity=0.257 Sum_probs=145.5
Q ss_pred ceeeccceEEEcCCCC-HHHHHHHHHhhcceEEEechHHHHHHHHHHhhccccCCCCCccEEEeccCCCCHHHHHHHHhh
Q 019921 2 AMLMVGACHVFIPKFE-SKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNS 80 (334)
Q Consensus 2 ~~l~~G~~~v~~~~~~-~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~ 80 (334)
.++..|+++++.+.+. +..+++.++++++|+++++|+++..+... . ..+++||.+++||+++++++.+++.+.
T Consensus 244 ~~l~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~~~~~----~--~~~~~lr~~~~gG~~l~~~~~~~~~~~ 317 (562)
T 3ite_A 244 LAWRFGLCAVTGERLSMLDDLPRTFRELGVTHAGIVPSLLDQTGLV----P--EDAPHLVYLGVGGEKMTPRTQQIWSSS 317 (562)
T ss_dssp HHHHTTCEEEECCHHHHHHSHHHHHHHTTCCEEEECHHHHHHHTCC----G--GGSTTCCEEEEESSCCCHHHHHHHTTC
T ss_pred HHHhcccEEEecchhhCHHHHHHHHHHcCCCEEEcCHHHHhhcccC----c--cccCceEEEEEecCCCCHHHHHHHhhC
Confidence 3567899998877643 57788999999999999999987665221 1 247899999999999999999999998
Q ss_pred CCCCceEcccccccccccccccccCCCCCCCCCCCCCcccCCCCCCCCCCCceeeccccCcceEEEeeCC------CCce
Q 019921 81 FPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG------SSHV 154 (334)
Q Consensus 81 ~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~~~~------~g~~ 154 (334)
+ ++++++.||+||++..++........ ...++|.|+++++++++|++ .|+.
T Consensus 318 ~-~~~~~~~YG~TE~~~~~~~~~~~~~~----------------------~~~~~G~p~~~~~~~i~d~~~~~~~~~g~~ 374 (562)
T 3ite_A 318 D-RVALVNVYGPTEVTIGCSAGRILPDS----------------------DTRCIGHPLGDSVAHVLAPGSNEHVKKGMA 374 (562)
T ss_dssp S-SCEEEEEECCGGGCSCSEEEECCTTS----------------------CTTEEEEECTTCEEEEECTTSSCBCCTTSC
T ss_pred C-CcEEEEeeccchheeeeeeeeecCCC----------------------CCccccccCCCCeEEEEeCCCCCCCCCCCc
Confidence 7 89999999999998766544332211 23369999999999999865 5778
Q ss_pred eEEEEcCcchhhhhhhcccCCCCcc-CCCceEeccceEEEcCCCcEEEeeccCceeeeCceeeChHHHHHHHhcC-CCcc
Q 019921 155 GRILTRGAHVMLRYWDQFLAKPSVS-TGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQH-PGII 232 (334)
Q Consensus 155 Gel~v~g~~~~~gy~~~~~~~~~~~-~~~~~~~TGDl~~~~~~G~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~-~~v~ 232 (334)
|||+|+|++++.||+++++.+...+ ++++||+|||+|++|+||+++|+||.||+||++|++|+|.+||++|.++ +.+.
T Consensus 375 GEl~v~g~~v~~GY~~~p~~t~~~~~~g~~w~~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~v~p~eIE~~l~~~~~~~~ 454 (562)
T 3ite_A 375 GELVIEGSLVANGYLNRPDAKGFCDINGRKMYRTGDIVRMDADSSILFLGRKDEQVKVRGQRLELGEVSEVIRSLSPTDI 454 (562)
T ss_dssp EEEEEESTTSCCEESSCTTCCSEEEETTEEEEEEEEEEEECTTSCEEEEEEC----------------------------
T ss_pred eEEEEeccccchhhCCCccccccccCCCCEEEecCCEEEEcCCCeEEEEccccCEEeECcEEECHHHHHHHHHhcCCCce
Confidence 9999999999999999999887654 3445999999999999999999999999999999999999999999998 7888
Q ss_pred eEEEEEEecCcceeEEEEEEEeccCccccccccccccchhhhhccHHHHHHHHHhcCCCCcccceEEEeccCCccCC-CC
Q 019921 233 GIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLT-ST 311 (334)
Q Consensus 233 ~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t-~~ 311 (334)
+++|++.+++..++..++.++............ ...+......++|++++++ .|+.|++|+.++++ ++||+| ++
T Consensus 455 ~~~v~~~~~~~~~~~~~~~~v~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~-~L~~y~~P~~i~~v-~~lP~t~~~ 529 (562)
T 3ite_A 455 DVVTLLLNHPGTSKQFLVSFVASSGAAVRGELR---WINENYKEINNSLRQACEQ-TLPAYMVPDFIIPI-SFIPLRDTS 529 (562)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred eEEEEEecCCCCcceEEEEEEeccccccccccc---ccccchhhHHHHHHHHHHh-hCCcccCCcEEEEe-ccCCCCCCC
Confidence 899998888876766665555443311110000 0001122345689999999 79999999998765 789998 89
Q ss_pred CccchHHHHHHHHhh
Q 019921 312 GKIRRDEVRREVMSH 326 (334)
Q Consensus 312 GKv~r~~l~~~~~~~ 326 (334)
||++|++|++++.+.
T Consensus 530 GKi~r~~L~~~~~~~ 544 (562)
T 3ite_A 530 AKTDAKALEHMFHTL 544 (562)
T ss_dssp ---------------
T ss_pred CcchHHHHHHHHhcc
Confidence 999999999998754
No 29
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=100.00 E-value=1.9e-44 Score=345.66 Aligned_cols=310 Identities=18% Similarity=0.252 Sum_probs=233.3
Q ss_pred eeeccceEEEcCC----CCHHHHHHHHHhhcceEEEechHHHHHHHHHHhhc-cccCCCCCccEEEeccCCCCHHHHHHH
Q 019921 3 MLMVGACHVFIPK----FESKSALEAVEQHCVTSLITVPAIMADLATLIRVK-KTWKGRDSVKKILNGGGGLPSELMKEA 77 (334)
Q Consensus 3 ~l~~G~~~v~~~~----~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~-~~~~~~~~lr~i~~gG~~l~~~~~~~~ 77 (334)
++..|+++++.+. +++..+++.++++++|+++++|+++..+.+..... ....++++||.+++||+++++++++++
T Consensus 240 ~l~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~l~~lr~~~~gg~~l~~~~~~~~ 319 (576)
T 3gqw_A 240 PVATQLSVDYLRTQDFAMRPLQWLKLISKNRGTVSVAPPFGYELCQRRVNEKDLAELDLSCWRVAGIGAEPISAEQLHQF 319 (576)
T ss_dssp HHHTTCCEEECCHHHHHHCTTHHHHHHHHTTCCEEEECHHHHHHHHHSCCHHHHTTCCCTTCCEEEECSSCCCHHHHHHH
T ss_pred HHhcCceEEEcchhHhhhCHHHHHHHHHHhCCeEEEcCHHHHHHHHHHhcccccccCChhhhHhhhccCccCCHHHHHHH
Confidence 4677888888764 68999999999999999999999998876543221 122357899999999999999999999
Q ss_pred HhhCC-----CCceEcccccccccccccccccCCCCCCCCCCC--CCcccC-CCCC--CCCCCCceeeccccCcceEEEe
Q 019921 78 TNSFP-----KAKLISAYGMTETSSSLTFMTLYDPTLETPGQL--PQAFGN-VTPN--SVHQPQGVCVGKPAPHVELKVC 147 (334)
Q Consensus 78 ~~~~~-----~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~--~~~~~~~~~~g~p~~~~~~~i~ 147 (334)
.+.|+ ++++++.||+||++..++............... ....+. ..+. ........++|+|+|+++++|+
T Consensus 320 ~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~ 399 (576)
T 3gqw_A 320 AECFRQVNFDNKTFMPCYGLAENALAVSFSDEASGVVVNEVDRDILEYQGKAVAPGAETRAVSTFVNCGKALPEHGIEIR 399 (576)
T ss_dssp HHHHGGGTCCGGGEEEEEECGGGSSEEEECCTTCCCCEEEEEHHHHHHHCBCCCCCTTCCCEEEEEBCCEECTTCEEEEE
T ss_pred HHHHhhcCCCcccccccCCcccccceeecccccCCccccccchhhhcccCcccccCccccCccceeecCCcCCCCeEEEE
Confidence 99874 689999999999998766543221100000000 000000 0000 0000123479999999999999
Q ss_pred eCC-----CCceeEEEEcCcchhhhhhhcccCCCCccCCCceEeccceEEEcCCCcEEEeeccCceeeeCceeeChHHHH
Q 019921 148 SDG-----SSHVGRILTRGAHVMLRYWDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVE 222 (334)
Q Consensus 148 ~~~-----~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~~d~i~~~G~~v~~~~iE 222 (334)
|++ .|+.|||+|+|++++.||+++++.+...+ .+|||+|||+|++ +||+++++||.||+||++|++|+|.+||
T Consensus 400 d~~g~~~~~g~~GEl~v~g~~~~~gY~~~~~~~~~~~-~~g~~~TGDl~~~-~dG~l~~~GR~dd~ik~~G~~v~p~eIE 477 (576)
T 3gqw_A 400 NEAGMPVAERVVGHICISGPSLMSGYFGDQVSQDEIA-ATGWLDTGDLGYL-LDGYLYVTGRIKDLIIIRGRNIWPQDIE 477 (576)
T ss_dssp CTTSCBCCTTBCEEEEEESTTSCCCBTTCHHHHHHHH-HHSCEEEEEEEEE-ETTEEEEEEETTTCEEETTEEECHHHHH
T ss_pred CCCCCCCCCCCeEEEEEeCccccccccCCcccccccc-CCCeeeccceEEE-ECCEEEEEecCcceEEECCEEECHHHHH
Confidence 875 67889999999999999999987766544 6789999999999 6999999999999999999999999999
Q ss_pred HHHhcCCCcceEEEEEEecCcceeEEEEEEEeccCccccccccccccchhhhhccHHHHHHHHHhcCC-CCcccceEEEe
Q 019921 223 AVLLQHPGIIGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNL-TGFKAPRLFVL 301 (334)
Q Consensus 223 ~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l-~~~~~p~~~~~ 301 (334)
++|.+||+|.+++|+++.++... ..+++..... .....+++.+.+++ .+ +.+++|..+.+
T Consensus 478 ~~l~~~p~V~~~~vv~~~~~~~~--~~~~~~~~~~----------------~~~~~~~l~~~l~~-~l~~~~~~p~~i~~ 538 (576)
T 3gqw_A 478 YIAEQEPEIHSGDAIAFVTAQEK--IILQIQCRIS----------------DEERRGQLIHALAA-RIQSEFGVTAAIDL 538 (576)
T ss_dssp HHHTTSSSCCTTSEEEEECTTSC--EEEEEECCCC----------------CHHHHHHHHHHHHH-HHHHHHSCCEEEEE
T ss_pred HHHHhCcccccccEEEEEcCCcc--EEEEEEEecC----------------chhHHHHHHHHHHH-HHHHHhCCceeEEE
Confidence 99999999999888888776533 4444443332 01234566667766 35 67889988766
Q ss_pred cc-CCccCCCCCccchHHHHHHHHhhcccCCCC
Q 019921 302 WR-KPFPLTSTGKIRRDEVRREVMSHLKSLPSN 333 (334)
Q Consensus 302 ~~-~~lP~t~~GKv~r~~l~~~~~~~~~~l~~~ 333 (334)
+. ++||+|++||++|++|++++.+.+++.|..
T Consensus 539 v~~~~lP~t~~GKi~r~~l~~~~~~~~~~~~~~ 571 (576)
T 3gqw_A 539 LPPHSIPRTSSGKPARAEAKKRYQKAYAASLNV 571 (576)
T ss_dssp ECSSCSCBCTTSSBCHHHHHHHHHHHHTCC---
T ss_pred ECCCCcCcCCCccchHHHHHHHHHHHhhhccch
Confidence 53 379999999999999999999999887753
No 30
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*
Probab=100.00 E-value=3.2e-44 Score=345.17 Aligned_cols=306 Identities=20% Similarity=0.232 Sum_probs=231.9
Q ss_pred ceeeccceEEEcCCC----CHHHHHHHHHhhcceEEEechHHHHHHHHHHhhc-cccCCCCCccEEEeccCCCCHHHHHH
Q 019921 2 AMLMVGACHVFIPKF----ESKSALEAVEQHCVTSLITVPAIMADLATLIRVK-KTWKGRDSVKKILNGGGGLPSELMKE 76 (334)
Q Consensus 2 ~~l~~G~~~v~~~~~----~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~-~~~~~~~~lr~i~~gG~~l~~~~~~~ 76 (334)
.+++.|+++++++.+ ++..+++.++++++|++.++|+++..+.+..... ....++++||.+++||+++++++.++
T Consensus 229 ~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~l~~lr~~~~gg~~l~~~~~~~ 308 (590)
T 3kxw_A 229 TPIYGGIQAIMMSPFSFLQNPLSWLKHITKYKATISGSPNFAYDYCVKRIREEKKEGLDLSSWVTAFNGAEPVREETMEH 308 (590)
T ss_dssp HHHHHTCEEEECCHHHHHHCTHHHHHHHHHHTCSEEEECTHHHHHHHHHCCGGGGTTCCCTTCCEEEECSSCCCHHHHHH
T ss_pred HHHhcCceEEEeCHHHHHHCHHHHHHHHHHhCCeeecCChhHHHHHHHHhhhhhccCCCchhhHHHhhCCCCCCHHHHHH
Confidence 357789999998864 8999999999999999999999999988764322 22235789999999999999999999
Q ss_pred HHhhCC-----CCceEcccccccccccccccccCCCCCC----CCCCCCCcccCCCCCCCCCCCceeeccccCcceEEEe
Q 019921 77 ATNSFP-----KAKLISAYGMTETSSSLTFMTLYDPTLE----TPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVC 147 (334)
Q Consensus 77 ~~~~~~-----~~~~~~~yG~tE~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~ 147 (334)
+.+.|+ ++++++.||+||++..++.......... .............+.........++|.|+++ ++|+
T Consensus 309 ~~~~~~~~g~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~--v~i~ 386 (590)
T 3kxw_A 309 FYQAFKEFGFRKEAFYPCYGLAEATLLVTGGTPGSSYKTLTLAKEQFQDHRVHFADDNSPGSYKLVSSGNPIQE--VKII 386 (590)
T ss_dssp HHHHHGGGTCCGGGEEEEEECGGGSSEEEECCTTSCCCEEEECSCCCSSSBCCBCCTTCTTCEEEECCCEESSE--EEEE
T ss_pred HHHHHHHcCCCccccccccccccccceeecccCCCCceeeeecHHHHhcCceeeccCCCCCcceEeccCCCCCC--eEEE
Confidence 998873 4589999999999987665432211000 0000000000000001111245678999998 7778
Q ss_pred eCC------CCceeEEEEcCcchhhhhhhcccCCCCccCC--------CceEeccceEEEcCCCcEEEeeccCceeeeCc
Q 019921 148 SDG------SSHVGRILTRGAHVMLRYWDQFLAKPSVSTG--------EVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGG 213 (334)
Q Consensus 148 ~~~------~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~--------~~~~~TGDl~~~~~~G~l~~~GR~~d~i~~~G 213 (334)
|++ .|+.|||+|+|++++.||+++++.+...|.+ .+||+|||+|+++ ||+++|+||.||+||++|
T Consensus 387 d~~~~~~~~~g~~GEl~v~g~~v~~GY~~~p~~t~~~f~~~~~~~~~g~~~~~TGDlg~~d-dG~l~~~GR~dd~Ik~~G 465 (590)
T 3kxw_A 387 DPDTLIPCDFDQVGEIWVQSNSVAKGYWNQPEETRHAFAGKIKDDERSAIYLRTGDLGFLH-ENELYVTGRIKDLIIIYG 465 (590)
T ss_dssp CTTTCCBCCTTBCEEEEEESTTSCCCBTTCHHHHHHHHCBCCTTC---CCBEEEEEEEEEE-TTEEEEEEESSCHHHHHH
T ss_pred cCCCCcCCCCCCEEEEEEeCCcccccccCChhHHHHHHhccccCCCCCCcEEecCcEEEEE-CCEEEEEcCccceEEECC
Confidence 865 5788999999999999999999988777642 2399999999999 999999999999999999
Q ss_pred eeeChHHHHHHH-hcCCCcc--eEEEEEEecCcceeEEEEEEEeccCccccccccccccchhhhhccHHHHHHHHHhcCC
Q 019921 214 ENVYPEEVEAVL-LQHPGII--GIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNL 290 (334)
Q Consensus 214 ~~v~~~~iE~~l-~~~~~v~--~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l 290 (334)
++|+|.+||++| ..+|.|. +++|++++++. ++.+++++++.+... .....+++.+.+++ .+
T Consensus 466 ~~v~p~eIE~~l~~~~~~v~~~~~~v~~~~~~~-~~~~~~~v~~~~~~~--------------~~~~~~~l~~~l~~-~l 529 (590)
T 3kxw_A 466 KNHYPQDIEFSLMHSPLHHVLGKCAAFVIQEEH-EYKLTVMCEVKNRFM--------------DDVAQDNLFNEIFE-LV 529 (590)
T ss_dssp HTTHHHHHHHHHHHSGGGGGEEEEEEEEEEETT-EEEEEEEEEESCTTC--------------CHHHHHHHHHHHHH-HH
T ss_pred EecCHHHHHHHHHhcCccccCccEEEEEecCCC-CceEEEEEEeccccc--------------cchhHHHHHHHHHH-HH
Confidence 999999999999 7889998 79999998876 677888888776410 01345667777777 45
Q ss_pred CC-cccce-EEEec-cCCccCCCCCccchHHHHHHHHhh
Q 019921 291 TG-FKAPR-LFVLW-RKPFPLTSTGKIRRDEVRREVMSH 326 (334)
Q Consensus 291 ~~-~~~p~-~~~~~-~~~lP~t~~GKv~r~~l~~~~~~~ 326 (334)
+. +++|. .+.++ .++||+|++|||+|++|++++.+.
T Consensus 530 ~~~~~~p~~~i~~v~~~~lP~t~sGKi~R~~L~~~~~~~ 568 (590)
T 3kxw_A 530 YENHQLEVHTIVLIPLKAMPHTTSGKIRRNFCRKHLLDK 568 (590)
T ss_dssp HHHHSCCCCEEEEEETTCSCCCSCHHHHHHHHHHHHHHT
T ss_pred HHHcCCceeEEEEECCCccCcCCCcHHHHHHHHHHHHcC
Confidence 53 67764 33332 368999999999999999998764
No 31
>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}
Probab=100.00 E-value=5.4e-43 Score=315.98 Aligned_cols=256 Identities=19% Similarity=0.240 Sum_probs=208.5
Q ss_pred ceeeccceEEEcCCCCHHHHHHHHHhhcceEEEechHHHHHHHHHHhhccccCCCCCccEEEeccCCCCHHHHHHHHhhC
Q 019921 2 AMLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSF 81 (334)
Q Consensus 2 ~~l~~G~~~v~~~~~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~ 81 (334)
.++..|+++++.+.. ...++.++++++|+++++|+++..+++...... .+++||.+++||+++++++.+++++.
T Consensus 98 ~~l~~g~~~~~~~~~--~~~~~~i~~~~~t~~~~~P~~l~~ll~~~~~~~---~l~~lr~v~~gG~~l~~~~~~~~~~~- 171 (358)
T 4gs5_A 98 RGMELDWELTVTEPT--ANPLAGLDHADFDFVAMVPMQLQSILENSATSG---QVDRLGKVLLGGAPVNHALAMQISDL- 171 (358)
T ss_dssp HHHHHTCEEEEECCC--SCTTTTCSSCCCSEEEECHHHHHHHHHCTTTGG---GGGGGCSEEECSSCCCHHHHHHHHTC-
T ss_pred HHHHhCcEEEecCcc--ccHHHHHHHhCCeEEEcChHHHHHhhccccccc---cCCcceEEEEcccCCCchheeccccc-
Confidence 357789998887642 234677899999999999999999887654333 47899999999999999999999874
Q ss_pred CCCceEcccccccccccccccccCCCCCCCCCCCCCcccCCCCCCCCCCCceeeccccCcceEEEeeCCCCceeEEEEcC
Q 019921 82 PKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDGSSHVGRILTRG 161 (334)
Q Consensus 82 ~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~~~~~g~~Gel~v~g 161 (334)
++++++.||+||++..++....... ..+.+|.+.|++.+.+.+. ||++++|
T Consensus 172 -~~~~~~~YG~TEt~~~~~~~~~~~~-----------------------~~g~~~~~~pgv~~~~~~~-----Gel~~~g 222 (358)
T 4gs5_A 172 -AMPVYQSYGMTETVSHVALKALNGP-----------------------EASELYVFLPGIQYGVDER-----GCLHISG 222 (358)
T ss_dssp -SSCEEEEEECGGGSSEEEEEECSST-----------------------TCCSCEEECTTCEEEECTT-----SEEEEES
T ss_pred -CceEEeccccccccceeeccccccc-----------------------ccceeeccCCCeEEEecCc-----CceEEec
Confidence 8999999999999976665443321 2335889999999987554 9999998
Q ss_pred cchhhhhhhcccCCCCccCCCceEeccceEEEcCCCcEEEeeccCceeeeCceeeChHHHHHHHh---cCCCcceEEEE-
Q 019921 162 AHVMLRYWDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLL---QHPGIIGIVVV- 237 (334)
Q Consensus 162 ~~~~~gy~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~~d~i~~~G~~v~~~~iE~~l~---~~~~v~~~~v~- 237 (334)
+. ..++||+|||++++|+|| ++++||.||+||++|++|+|.+||++|. .||.|.+++|+
T Consensus 223 ~~----------------~~~g~~~TGDlg~~d~~g-~~~~GR~dd~Ik~~G~~v~p~eIE~~l~~~~~~p~V~~a~vv~ 285 (358)
T 4gs5_A 223 AV----------------TNGQTVQTNDLVEIHGNA-FQWIGRADNVINSGGVKIVLDQIDQRIAAVFHHLNIGNAFFCW 285 (358)
T ss_dssp GG----------------GTTCCEEEEEEEEECSSE-EEEEEEGGGEEEETTEEEEHHHHHHHHHHHHHHHTCCCCEEEE
T ss_pred cc----------------ccCcceecCCccccccCc-eEEcccccCeEEECCEEECHHHHHHHHHHhccCCCccEEEEEE
Confidence 53 246899999999999988 6778999999999999999999998774 57999998776
Q ss_pred EEecCcceeEEEEEEEeccCccccccccccccchhhhhccHHHHHHHHHhcCCCCcccceEEEeccCCccCCCCCccchH
Q 019921 238 GIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRD 317 (334)
Q Consensus 238 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GKv~r~ 317 (334)
+.+++..++.++++|+.... ....++|++++++ .|+.|++|+.++++ ++||+|++|||+|+
T Consensus 286 ~~~d~~~ge~~~a~v~~~~~-----------------~~~~~~l~~~l~~-~L~~~~~P~~i~~v-~~lP~t~~GKi~R~ 346 (358)
T 4gs5_A 286 WEPDAKLGQKLVLVIENAMP-----------------EALTERLTAEIRS-RVSTYENPKHIYFA-KAFAKTQTDKIDKR 346 (358)
T ss_dssp EEEETTTEEEEEEEEESCCC-----------------HHHHHHHHHHHHH-HSCGGGSCSCEEEE-SSCCBCTTSCBCHH
T ss_pred ecCCccCCEEEEEEEECCCC-----------------CcCHHHHHHHHHh-hCCCCCCceEEEEE-CCcCCCCCCChhHH
Confidence 67788888889998876553 2455789999999 79999999998875 78999999999999
Q ss_pred HHHHHHHhhcc
Q 019921 318 EVRREVMSHLK 328 (334)
Q Consensus 318 ~l~~~~~~~~~ 328 (334)
+|++++++..+
T Consensus 347 ~L~~~l~e~~~ 357 (358)
T 4gs5_A 347 ATFQKLSDSSN 357 (358)
T ss_dssp HHHHHTC----
T ss_pred HHHHHhhhhcC
Confidence 99999877543
No 32
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*
Probab=100.00 E-value=3.9e-40 Score=305.44 Aligned_cols=262 Identities=16% Similarity=0.201 Sum_probs=207.1
Q ss_pred ceeeccceEEEcCCCCHHHHHHHHHhhcceEEEechHHHHHHHHHHhhccccCCCCCccEEEeccCCCCHHHHHHHHhhC
Q 019921 2 AMLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSF 81 (334)
Q Consensus 2 ~~l~~G~~~v~~~~~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~ 81 (334)
.++..|+++++.+..++..+++.|+++++|+++++|+++..|++..........+++||.+++||+++++++.+++++.|
T Consensus 151 ~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~ 230 (436)
T 3qov_A 151 GAERLGCLTVPAAAGNSKRQIKFISDFKTTALHAIPSYAIRLAEVFQEEGIDPRETTLKTLVIGAEPHTDEQRRKIERML 230 (436)
T ss_dssp HHHHHTCEEECCCSCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHHHTTCCTTSSSCCEEEEESSCCCHHHHHHHHHHH
T ss_pred HHHHcCCEEEeCCCCCHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHcCCCcccCCccEEEEeCCcCCHHHHHHHHHHh
Confidence 35678999999988999999999999999999999999999998876655433478999999999999999999999999
Q ss_pred CCCceEcccccccccccccccccCCCCCCCCCCCCCcccCCCCCCCCCCCceeeccccCcceEEEeeCC------CCcee
Q 019921 82 PKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG------SSHVG 155 (334)
Q Consensus 82 ~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~~~~------~g~~G 155 (334)
++++++.||+||+++.++....... ...+.|.+++.++++|++ .|+.|
T Consensus 231 -g~~v~~~YG~TE~~~~~~~~~~~~~-------------------------~g~~~~~~~~~v~i~d~~~g~~~~~g~~G 284 (436)
T 3qov_A 231 -NVKAYNSFGMTEMNGPGVAFECQEQ-------------------------NGMHFWEDCYLVEIIDPETGEPVPEGEIG 284 (436)
T ss_dssp -TSEEEEEEEEGGGTEEEEEEECTTC-------------------------SSEEECTTTEEEEEECTTTCSBCSTTCCE
T ss_pred -CccEEecCcchhhcCCeeEEecCCC-------------------------CeeEEccCceEEEEEECCCCCCCCCCCce
Confidence 9999999999999654332222111 026777889999999954 67889
Q ss_pred EEEEcCcchhhhhhhcccCCCCccCCCceEeccceEEEcCCC------c---EEEeeccCceeeeCceeeChHHHHHHHh
Q 019921 156 RILTRGAHVMLRYWDQFLAKPSVSTGEVWLDTGDIGSIDDGG------N---VWLVGRRNGRIKSGGENVYPEEVEAVLL 226 (334)
Q Consensus 156 el~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGDl~~~~~~G------~---l~~~GR~~d~i~~~G~~v~~~~iE~~l~ 226 (334)
||+|+|. +...+ ..+||+|||+++++++| + +++.||.||+||++|++|+|.+||++|.
T Consensus 285 el~v~~~------------~~~~~-~~~~y~TGDl~~~~~~gc~cG~~~~~il~i~GR~dd~ik~~G~~v~p~eiE~~l~ 351 (436)
T 3qov_A 285 ELVLTTL------------DREMM-PLIRYRTRDLTRILPGKCPCGRTHLRIDRIKGRSDDMFIIKGVNIFPMQVEKILV 351 (436)
T ss_dssp EEEEEES------------SCCSS-CCCSEEEEEEECEECSCCTTCCCSCEECCCCCBSSSCEEETTEEECHHHHHHHHT
T ss_pred EEEEecc------------CcCCc-eEEEEEcCCEEEEcCCCCCCCCCccccCcccCccCCEEEECCEEECHHHHHHHHH
Confidence 9999982 22333 57899999999999998 5 6999999999999999999999999999
Q ss_pred cCCCcceEEEEEEecCcceeEEEEEEEeccCccccccccccccchhhhhccHHHHHHHHHhcCCCCc-ccceEEEeccC-
Q 019921 227 QHPGIIGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGF-KAPRLFVLWRK- 304 (334)
Q Consensus 227 ~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~-~~p~~~~~~~~- 304 (334)
+||+|.+++|++.+++..++.++++|++. +....+ ....+++.+.+++ .++.+ ++|..+.++ +
T Consensus 352 ~~p~v~~~~vv~~~~~~~~~~l~a~v~~~-~~~~~~------------~~~~~~l~~~l~~-~l~~~~~~p~~i~~v-~~ 416 (436)
T 3qov_A 352 QFPELGSNYLITLETVNNQDEMIVEVELS-DLSTDN------------YIELEKIRRDIIR-QLKDEILVTPKVKLV-KK 416 (436)
T ss_dssp TCTTEEEEEEEEEEEETTEEEEEEEEEEC-TTCCCC------------HHHHHHHHHHHHH-HHHHHHSSCCEEEEE-CT
T ss_pred hCcCcCCcEEEEEEcCCCCcEEEEEEEEc-Cccccc------------hhhHHHHHHHHHH-HHHHhcCCceEEEEe-CC
Confidence 99999999999999888888999999987 411110 1224566677777 56666 788777665 5
Q ss_pred -CccCCCCCccchHH
Q 019921 305 -PFPLTSTGKIRRDE 318 (334)
Q Consensus 305 -~lP~t~~GKv~r~~ 318 (334)
+||+|+ ||++|..
T Consensus 417 ~~lP~t~-GKi~R~~ 430 (436)
T 3qov_A 417 GSLPQSE-GKAVRVK 430 (436)
T ss_dssp TCCC--------CEE
T ss_pred CcccCcC-CcceEEE
Confidence 899999 9999864
No 33
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Probab=100.00 E-value=2.2e-40 Score=307.67 Aligned_cols=267 Identities=15% Similarity=0.162 Sum_probs=211.9
Q ss_pred eeeccceEEEcCCCCHHHHHHHHHhhcceEEEechHHHHHHHHHHhhccccCCCCCccEEEeccCCCCHHHHHHHHhhCC
Q 019921 3 MLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFP 82 (334)
Q Consensus 3 ~l~~G~~~v~~~~~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~ 82 (334)
++..|+++++++.+++..+++.|+++++|+++++|+++..|++..........+++||.+++||+++++++.+++++.|
T Consensus 158 ~~~~G~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~- 236 (443)
T 2y4o_A 158 AERLGCMVVPMSGGQTEKQVQLIRDFEPKIILVTPSYMLNLIDEMVRQGMDPAESSLKIGIFGAEPWTQALRNEVETRV- 236 (443)
T ss_dssp HHHHTCEEECCCSCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESSCCCHHHHHHHHHHH-
T ss_pred HHHcCCEEEECCCCCHHHHHHHHHHhCCcEEEECHHHHHHHHHHHHHcCCCcccCCceEEEECCCcCCHHHHHHHHHHh-
Confidence 5678999999888899999999999999999999999999988765443311247899999999999999999999999
Q ss_pred CCceEcccccccccccccccccCCCCCCCCCCCCCcccCCCCCCCCCCCceeeccccCcceEEEeeCC------CCceeE
Q 019921 83 KAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG------SSHVGR 156 (334)
Q Consensus 83 ~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~~~~------~g~~Ge 156 (334)
++++++.||+||+++.++....... .. ..+.|.+++.++++|++ .|+.||
T Consensus 237 g~~v~~~YG~TE~~g~~~~~~~~~~-----------------------~~-g~~~~~~~~~~~i~d~~~g~~~~~G~~Ge 292 (443)
T 2y4o_A 237 GIDALDIYGLSEVMGPGVACECVET-----------------------KD-GPVIWEDHFYPEIIDPVTGEVLPDGSQGE 292 (443)
T ss_dssp TCEEEEEEEETTTTEEEEEEECTTT-----------------------CC-SEEECTTTEEEEEECTTTCCBCCTTCCEE
T ss_pred CcCEEeccCchhhcCCeEEeccCCC-----------------------CC-ceEEccCCeEEEEEcCCCCCCCCCCCceE
Confidence 8999999999998543222211110 00 14556788999999854 578899
Q ss_pred EEEcCcchhhhhhhcccCCCCccCCCceEeccceEEEcCC-CcE-----EEeeccCceeeeCceeeChHHHHHHHhcCCC
Q 019921 157 ILTRGAHVMLRYWDQFLAKPSVSTGEVWLDTGDIGSIDDG-GNV-----WLVGRRNGRIKSGGENVYPEEVEAVLLQHPG 230 (334)
Q Consensus 157 l~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGDl~~~~~~-G~l-----~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~ 230 (334)
|+++|. +...+ +.+||+|||+++++++ |++ ++.||.||+||++|++|+|.+||++|.++|+
T Consensus 293 l~v~~~------------t~~~~-p~~~y~TGDl~~~~~~cG~~~~~l~~i~GR~~d~i~~~G~~v~p~eiE~~l~~~p~ 359 (443)
T 2y4o_A 293 LVFTSL------------TKEAM-PVIRYRTRDLTALLPPTARAMRRLAKITGRSDDMLIVRGVNVFPSQIEEIVVALPL 359 (443)
T ss_dssp EEEEES------------SCSSS-CCSSEEEEEEECEECCSSSSSCEECCCCEESSCCEEETTEEECHHHHHHHHHTSTT
T ss_pred EEEeCC------------CcccC-hhheeecCCEEEEcCCCCCCccccCccccccCCeEEECCEEECHHHHHHHHHhCcC
Confidence 999972 22333 5689999999999999 987 8999999999999999999999999999999
Q ss_pred cceEEEEEEecCcceeEEEEEEEecc--CccccccccccccchhhhhccHHHHHHHHHhcCCCCc-ccceEEEecc-CCc
Q 019921 231 IIGIVVVGIANARLTEMVVACVRLRE--SWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGF-KAPRLFVLWR-KPF 306 (334)
Q Consensus 231 v~~~~v~~~~~~~~~~~~~~~v~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~-~~p~~~~~~~-~~l 306 (334)
|.++++++++++..++.++++|++.+ +.. + ...+.+++++.+++ .++.+ ++|..+.++. ++|
T Consensus 360 V~~~~vv~~~~~~~~~~~~a~v~~~~~~~~~--~-----------~~~~~~~l~~~l~~-~l~~~~~~p~~v~~v~~~~l 425 (443)
T 2y4o_A 360 LSGQFQITLSRDGHMDRLDLAVELRSEAAAS--V-----------TDGERAALARELQH-RIKTMVGVSSGVTVLAAGGI 425 (443)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEECHHHHTT--C-----------CHHHHHHHHHHHHH-HHHHHTCCCCEEEEECTTCS
T ss_pred cCccEEEEEecCCCCceEEEEEEECCccccc--c-----------hhhHHHHHHHHHHH-HHHHHhCCceEEEEeCCCcc
Confidence 99999999988777788999988765 200 0 01334667778877 57665 5887766543 589
Q ss_pred cCCCCCccchHHHHH
Q 019921 307 PLTSTGKIRRDEVRR 321 (334)
Q Consensus 307 P~t~~GKv~r~~l~~ 321 (334)
|+|++||++|+..++
T Consensus 426 P~t~~GKi~r~~~~r 440 (443)
T 2y4o_A 426 PATATGKARRVIDRR 440 (443)
T ss_dssp CCCTTSCCCSEEECC
T ss_pred cCccCCcceEEEecc
Confidence 999999999975443
No 34
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*
Probab=100.00 E-value=2.1e-39 Score=300.64 Aligned_cols=264 Identities=11% Similarity=0.122 Sum_probs=210.5
Q ss_pred ceeeccceEEEcCCCCHHHHHHHHHhhcceEEEechHHHHHHHHHHhhccccCCCCCccEEEeccCCCCHHHHHHHHhhC
Q 019921 2 AMLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSF 81 (334)
Q Consensus 2 ~~l~~G~~~v~~~~~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~ 81 (334)
.++..|+++++.+.+++..+++.|+++++|+++++|+++..|++..........+++||.+++||+++++++.+++.+.|
T Consensus 155 ~~~~~G~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~ 234 (437)
T 2y27_A 155 GAERAGLTVIPFGGGQTEKQVQLIQDFRPDIIMVTPSYMLSIADEIERQGLDPVQSSLRIGIFGAEPWTNDMRVAIEQRM 234 (437)
T ss_dssp HHHHTTCEEECCCSCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESSCCCHHHHHHHHHHH
T ss_pred HHHHcCCEEEeCCCCCHHHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcCCCcccCCeeEEEEcCccCCHHHHHHHHHHH
Confidence 35678999998888899999999999999999999999999988765433311247899999999999999999999988
Q ss_pred CCCceEcccccccccccccccccCCCCCCCCCCCCCcccCCCCCCCCCCCceeeccccCcceEEEeeCC------CCcee
Q 019921 82 PKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG------SSHVG 155 (334)
Q Consensus 82 ~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~~~~------~g~~G 155 (334)
++++++.||+||+++.++........ . ..+.|.+++.++++|++ .|+.|
T Consensus 235 -g~~v~~~YG~TE~~g~~~~~~~~~~~----------------------~--g~~~~~~~~~~~i~d~~~g~~~~~g~~G 289 (437)
T 2y27_A 235 -GIDAVDIYGLSEVMGPGVASECVETK----------------------D--GPTIWEDHFYPEIIDPETGEVLPDGELG 289 (437)
T ss_dssp -TSEEEEEEEETTTTEEEEEECCTTTC----------------------S--SCEECTTTEEEEEECTTTCCBCCTTCCE
T ss_pred -CcCEEecCCchhhcCCeeEEecCCCC----------------------C--ceeEccCceEEEEEcCCCCCCCCCCCcc
Confidence 89999999999984331211111100 0 14557789999999854 57889
Q ss_pred EEEEcCcchhhhhhhcccCCCCccCCCceEeccceEEEcC-CCcE-----EEeeccCceeeeCceeeChHHHHHHHhcCC
Q 019921 156 RILTRGAHVMLRYWDQFLAKPSVSTGEVWLDTGDIGSIDD-GGNV-----WLVGRRNGRIKSGGENVYPEEVEAVLLQHP 229 (334)
Q Consensus 156 el~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGDl~~~~~-~G~l-----~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~ 229 (334)
||+++|. +...+ .++||+|||++++++ +|++ ++.||.||+|+++|++|+|.+||++|.+||
T Consensus 290 el~v~~~------------t~~~~-~~~~y~TGDl~~~~~~~G~~~~~i~~i~GR~~d~i~~~G~~v~p~eiE~~l~~~p 356 (437)
T 2y27_A 290 ELVFTSL------------TKEAL-PIIRYRTRDLTRLLPGTARTMRRMEKITGRSDDMMIVRGVNVFPTQIEEQLLKQR 356 (437)
T ss_dssp EEEEEES------------SCSSS-CCCSEEEEEEECEECCSSSSSCEECCCCEEGGGCEEETTEEECHHHHHHHHTTCT
T ss_pred EEEEecC------------CcCCc-hhheeecCCEEEEeCCCCCCccccCccccccCCeEEECCeEECHHHHHHHHHhCc
Confidence 9999972 23333 578999999999999 6986 899999999999999999999999999999
Q ss_pred CcceEEEEEEecCcceeEEEEEEEeccCccccccccccccchhhhhccHHHHHHHHHhcCCCCc-ccceEEEecc-CCcc
Q 019921 230 GIIGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGF-KAPRLFVLWR-KPFP 307 (334)
Q Consensus 230 ~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~-~~p~~~~~~~-~~lP 307 (334)
+|.+++|++++++..++.++++|++.++.. + ...+.+++++.+++ .++.+ .+|..+.++. ++||
T Consensus 357 ~V~~~~vv~~~~~~~~~~l~a~v~~~~~~~--~-----------~~~~~~~l~~~l~~-~l~~~~~~p~~v~~v~~~~lP 422 (437)
T 2y27_A 357 ALAPHYQIVLTKEGPLDVLTLNVEPCPETA--P-----------DTAAIQVAKQALAY-DIKSLIGVTAVINVLPVNGIE 422 (437)
T ss_dssp TBCSCCEEEEEEETTEEEEEEEECBCTTTT--T-----------CHHHHHHHHHHHHH-HHHHHHCCCEEEEECCTTCSC
T ss_pred CcCccEEEEEeecCCCceEEEEEEECCCcc--c-----------hhhhHHHHHHHHHH-HHHHhcCCceEEEEeCCCCcc
Confidence 999999999888777888999998775410 0 01234667788888 57776 5887776653 5899
Q ss_pred CCCCCccchHH
Q 019921 308 LTSTGKIRRDE 318 (334)
Q Consensus 308 ~t~~GKv~r~~ 318 (334)
+|+ ||++|..
T Consensus 423 ~t~-GKi~r~~ 432 (437)
T 2y27_A 423 RSV-GKARRVV 432 (437)
T ss_dssp CCS-SSCCCEE
T ss_pred CCC-CcceEEE
Confidence 999 9999974
No 35
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A
Probab=99.95 E-value=6.6e-29 Score=232.73 Aligned_cols=200 Identities=17% Similarity=0.260 Sum_probs=149.0
Q ss_pred ceeeccceEEEcCCC----CHHHHHHHHHhhcceEEEechHHHHHHHHHHhh--ccccCCCCCccEEEeccCCCCHHHHH
Q 019921 2 AMLMVGACHVFIPKF----ESKSALEAVEQHCVTSLITVPAIMADLATLIRV--KKTWKGRDSVKKILNGGGGLPSELMK 75 (334)
Q Consensus 2 ~~l~~G~~~v~~~~~----~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~--~~~~~~~~~lr~i~~gG~~l~~~~~~ 75 (334)
.+++.|+++++.+.. ++..+++.++++++| +.++|+++..++..... ......+++||.+++||+++++++++
T Consensus 251 ~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t-~~~~p~~~~~l~~~~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~ 329 (480)
T 3t5a_A 251 APILGGYPAVLTSPVSFLQRPARWMHLMASDFHA-FSAAPNFAFELAARRTTDDDMAGRDLGNILTILSGSERVQAATIK 329 (480)
T ss_dssp HHHHHTCCEEECCHHHHHHCTHHHHHHTTSSSEE-EEEECHHHHHHHHHHCCTGGGTTCCCTTCCEEEECCTTCCHHHHH
T ss_pred HHHHcCCceEEECHHHHHHCHHHHHHHHHhhcee-EeeChHHHHHHHHhhcCcccccccchhhhheeeecCCcCCHHHHH
Confidence 467889999998753 899999999999999 88999998888765321 11223688999999999999999999
Q ss_pred HHHhhC-----CCCceEcccccccccccccccccCCCCCCCCCCC-CCcccCCCCCC-CCCCCceeeccccCcceEEEee
Q 019921 76 EATNSF-----PKAKLISAYGMTETSSSLTFMTLYDPTLETPGQL-PQAFGNVTPNS-VHQPQGVCVGKPAPHVELKVCS 148 (334)
Q Consensus 76 ~~~~~~-----~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~g~p~~~~~~~i~~ 148 (334)
++.+.| +++.+++.||+||++..++............... ....+...+.. .......++|+|++ ++++|+|
T Consensus 330 ~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~G~p~~-~~~~ivd 408 (480)
T 3t5a_A 330 RFADRFARFNLQERVIRPSYWLAEATVYVATSKPGQPPETVDFDTESLSAGHAKPCAGGGATSLISYMLPRS-PIVRIVD 408 (480)
T ss_dssp HHHHHSGGGTCCGGGEEEEEEETTTTEEEEECCTTSSCCEEEECHHHHHTTBCCCCCSSSCEEEECEECCSS-SEEEEEE
T ss_pred HHHHHHhhcCCChhhccccccccccceeEeecccCCCcceEEecHHHhccCceeecCCCCcceeeecCcccC-CEEEEEc
Confidence 999988 3468999999999998766544322110000000 00000000000 00114457999999 9999999
Q ss_pred CC------CCceeEEEEcCcchhhhhhhcccCCCCccC-----------CCceEeccceEEEcCCCcEEEeec
Q 019921 149 DG------SSHVGRILTRGAHVMLRYWDQFLAKPSVST-----------GEVWLDTGDIGSIDDGGNVWLVGR 204 (334)
Q Consensus 149 ~~------~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~-----------~~~~~~TGDl~~~~~~G~l~~~GR 204 (334)
++ .|+.|||+|+|++++.||+++++.+...|. +++||+|||+|+++ ||+++|+||
T Consensus 409 ~~~g~~~~~g~~GEl~v~g~~v~~GY~~~pe~t~~~f~~~~~~~~~~~~~~~w~~TGDlg~~d-dG~l~~~GR 480 (480)
T 3t5a_A 409 SDTCIECPDGTVGEIWVHGDNVANGYWQKPDESERTFGGKIVTPSPGTPEGPWLRTGDSGFVT-DGKMFIIGR 480 (480)
T ss_dssp TTTTEECCTTBCEEEEEESTTSCCCBTTBHHHHHHHHCBCCSSCCTTCCCCCBEEEEEEEEEE-TTEEEECC-
T ss_pred CCCCcCCCCCCEEEEEEeCCccccccccCcchhHHHHhhhhccccCCCCCCCeeeccceeeEE-CCEEEEeCC
Confidence 75 578899999999999999999998887764 56899999999997 999999998
No 36
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*
Probab=99.79 E-value=8.9e-20 Score=164.99 Aligned_cols=167 Identities=16% Similarity=0.224 Sum_probs=119.6
Q ss_pred eeeccceEEEcCCCCHH-----------------------HHHHHHHhhcceEEEechHHHHHHHHHHhhccccCCCCCc
Q 019921 3 MLMVGACHVFIPKFESK-----------------------SALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSV 59 (334)
Q Consensus 3 ~l~~G~~~v~~~~~~~~-----------------------~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~l 59 (334)
++..|+ ++++..+++. .+++.++++++|+++++|+++..|++....... .+++|
T Consensus 157 ~~~~G~-~v~~~~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~--~~~~l 233 (369)
T 3hgu_A 157 ALRLGG-MFFSIDIDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFLVTTPPVLRELLKRPEVVLQ--MKQSL 233 (369)
T ss_dssp HHHTTS-CEECCCCCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCEEEEEECHHHHHHHTTCHHHHHH--HHHHC
T ss_pred HHHcCC-EEECccCChHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhCCCCEEEeCHHHHHHHHhhhhhhcc--ccCCe
Confidence 356788 6666677877 888899999999999999999998876432211 35789
Q ss_pred cEEEeccCCCCHHHHHHHH-hhCCCCceEcccccccccccccccccCCCCCCCCCCCCCcccCCCCCCCCCCCceeeccc
Q 019921 60 KKILNGGGGLPSELMKEAT-NSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKP 138 (334)
Q Consensus 60 r~i~~gG~~l~~~~~~~~~-~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p 138 (334)
|.+++||+++++++++++. +.||++++++.||+||+++++..+... ++|.|
T Consensus 234 r~i~~gGe~l~~~~~~~~~~~~~p~~~v~~~YG~TE~~~~~~~~~~~----------------------------~~G~~ 285 (369)
T 3hgu_A 234 AQITLGGTELNLDEIKFIASEILPDCEFSASYGSTSALGVSRSLLIT----------------------------SESQQ 285 (369)
T ss_dssp SEEEEESSCCCHHHHHHHHHHTCTTSEEEEEEEEGGGTEEEEECCBC----------------------------TTCSS
T ss_pred eEEEECCccCCHHHHHHHHHHhCCCcEEEcccCchhhhcceeccccc----------------------------cCCCc
Confidence 9999999999999999999 999899999999999998654221110 26777
Q ss_pred ------cCcceEEEeeC-C-----CCceeEEEEcCcchhhhhhhcccCCCCccCCCceEeccceEEEcCC--C-------
Q 019921 139 ------APHVELKVCSD-G-----SSHVGRILTRGAHVMLRYWDQFLAKPSVSTGEVWLDTGDIGSIDDG--G------- 197 (334)
Q Consensus 139 ------~~~~~~~i~~~-~-----~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGDl~~~~~~--G------- 197 (334)
+|+++++|+|+ + .|+.|||+|++.... .+ -.+|+|||+++..+. |
T Consensus 286 ~~~~~~~~~~~v~ivD~~~g~~vp~G~~GEl~vt~l~~~------------~~--l~ry~tgD~~~~~~~~~g~~~d~~~ 351 (369)
T 3hgu_A 286 VIYDSFSPFITYDVVDSITAQTVEYGERGNVIVTHLSPW------------AF--YPRVAERDTAIRLPGVSGFAGDRLA 351 (369)
T ss_dssp CEEECCTTTEEEEEECTTTCSBCCTTCEEEEEEEEEETT------------EE--EEEEEEEEEEEEECCSTTCSSCEEE
T ss_pred ccccCCCCCeEEEEECCCCCcCCCCCCceEEEEEEcCcc------------cc--cccccCCceEEEecCCCCCcCcccc
Confidence 89999999997 3 688999999873211 11 135899999987553 2
Q ss_pred cEEEeeccCceeeeCce
Q 019921 198 NVWLVGRRNGRIKSGGE 214 (334)
Q Consensus 198 ~l~~~GR~~d~i~~~G~ 214 (334)
.+..++|.++..++.|.
T Consensus 352 ~v~~~~~~~~~~~i~gv 368 (369)
T 3hgu_A 352 DIEPLKISEGRKVIEGV 368 (369)
T ss_dssp EEEECC-----------
T ss_pred cceeccccCCCceeeec
Confidence 24566777777777664
No 37
>3lax_A Phenylacetate-coenzyme A ligase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 1.43A {Bacteroides vulgatus}
Probab=99.62 E-value=2.9e-15 Score=110.81 Aligned_cols=100 Identities=17% Similarity=0.247 Sum_probs=70.8
Q ss_pred eccCceeeeCceeeChHHHHHHHhcCCCcceEEEEEEecCcceeEEEEEEEeccCccccccccccccchhhhhccHHHHH
Q 019921 203 GRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLR 282 (334)
Q Consensus 203 GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 282 (334)
.|.||+|+++|.+++|.+||++|.+||+|.++++++++++..++.+.++|++.+..... ........+.++
T Consensus 1 srADDmIiv~G~nv~P~eIE~vl~~~p~v~~~~vv~v~~~~~~~~~~~~V~~~~~~~~~---------~~~~~~l~~~i~ 71 (109)
T 3lax_A 1 SNADDMIILKGVNIFPIQIETILLQFKELGSDYLITLETAESNDEMTVEVELSQLFTDD---------YGRLQALTREIT 71 (109)
T ss_dssp CGGGSCEEETTEEECHHHHHHHHHTCTTEEEEEEEEEEEETTEEEEEEEEEECTTCCCC---------HHHHHHHHHHHH
T ss_pred CCcCEEEEECCEEECHHHHHHHHHhCCCcccceEEEEeccccceeEEEEEEEeeccccc---------cchhhhhHHHHH
Confidence 48999999999999999999999999999999999999999999999999887752111 111122334455
Q ss_pred HHHHhcCCCCcccceEEEec-cCCccCCCCCccch
Q 019921 283 QHCREKNLTGFKAPRLFVLW-RKPFPLTSTGKIRR 316 (334)
Q Consensus 283 ~~~~~~~l~~~~~p~~~~~~-~~~lP~t~~GKv~r 316 (334)
+.+++ .+.++..+.++ .++||+| +||++|
T Consensus 72 ~~l~~----~~gv~~~v~~v~~~~lPrt-sGKi~R 101 (109)
T 3lax_A 72 RQLKD----EILVTPRVKLVPKGALPKS-EGKAVR 101 (109)
T ss_dssp HHHHH----HHSSCCEEEEECTTCSCCC----CCC
T ss_pred HHHHH----HhCCccceEEEcCCeecCC-CCCcch
Confidence 55554 12233333333 3589998 799988
No 38
>3gxs_A Phenylacetate-coenzyme A ligase; APC62324.1, structural genomics, PSI-2, protein structure initiative; 1.43A {Bacteroides vulgatus atcc 8482} PDB: 3lax_A
Probab=99.58 E-value=5e-15 Score=109.40 Aligned_cols=101 Identities=17% Similarity=0.211 Sum_probs=69.9
Q ss_pred eccCceeeeCceeeChHHHHHHHhcCCCcceEEEEEEecCcceeEEEEEEEeccCccccccccccccchhhhhccHHHHH
Q 019921 203 GRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLR 282 (334)
Q Consensus 203 GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 282 (334)
||.||+|+++|.+++|.+||++|.+||+|.++++++++++.+++.+++++++ ++.... .........+.++
T Consensus 1 GR~~D~Iiv~G~nv~P~eIE~~l~~~p~v~~~~~v~v~~~~~~e~l~~~ve~-~~~~~~--------~~~~~~~l~~~i~ 71 (109)
T 3gxs_A 1 SNADDMIILKGVNIFPIQIETILLQFKELGSDYLITLETAESNDEMTVEVEL-SQLFTD--------DYGRLQALTREIT 71 (109)
T ss_dssp CGGGSCEEETTEEECHHHHHHHHHTCTTEEEEEEEEEEEETTEEEEEEEEEE-CTTCCC--------CHHHHHHHHHHHH
T ss_pred CCccCEEEECCEEECHHHHHHHHHhCCCcCCcEEEEEEcCCCceEEEEEEEE-cCcccc--------chhHHHHHHHHHH
Confidence 8999999999999999999999999999999999989888888899999998 541100 0001122344555
Q ss_pred HHHHhcCCCCcccceEEEecc-CCccCCCCCccchH
Q 019921 283 QHCREKNLTGFKAPRLFVLWR-KPFPLTSTGKIRRD 317 (334)
Q Consensus 283 ~~~~~~~l~~~~~p~~~~~~~-~~lP~t~~GKv~r~ 317 (334)
+.+++ .+.++..+.++. .+||+| +||++|.
T Consensus 72 ~~l~~----~~~~~~~v~~v~~~~lPrt-sGKi~R~ 102 (109)
T 3gxs_A 72 RQLKD----EILVTPRVKLVPKGALPKS-EGKAVRV 102 (109)
T ss_dssp HHHHH----HHSSCCEEEEECTTCSCCC----CCCE
T ss_pred HHHHH----hhCCceEEEEECCCCccCC-CCceEEE
Confidence 55554 223333444432 389999 9999884
No 39
>4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A*
Probab=98.37 E-value=2.7e-06 Score=79.88 Aligned_cols=61 Identities=13% Similarity=0.082 Sum_probs=51.2
Q ss_pred CCceeEEEEcCcchhhhhhhcccCCCCccCCCceEeccceEEEcC----CCcEEEeeccCceeeeCceeeChHHHHHHHh
Q 019921 151 SSHVGRILTRGAHVMLRYWDQFLAKPSVSTGEVWLDTGDIGSIDD----GGNVWLVGRRNGRIKSGGENVYPEEVEAVLL 226 (334)
Q Consensus 151 ~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGDl~~~~~----~G~l~~~GR~~d~i~~~G~~v~~~~iE~~l~ 226 (334)
.|+.+|+++++.+ |. -.|++||+.+.+. ..++.|+||.+|++.+.|++++..+||+++.
T Consensus 383 ~G~~YelViTt~~---GL--------------~RYr~GD~v~v~~f~~~~p~i~f~gR~~~~l~~~Gekl~~~~v~~al~ 445 (581)
T 4eql_A 383 LGCTYEPVVTNFA---GL--------------YRMRVGDIVLVTGFYNNAPQFKFVRRENVVLSIDSDKTNEEDLFKAVS 445 (581)
T ss_dssp TTCEEEEEEECSS---SC--------------CSEECCEEEEEEEEETTEEEEEEEEETTEEECSSSCCEEHHHHHHHHH
T ss_pred CCceEEEEEeecc---ce--------------eeEEcCCEEEEcccCCCCcEEEEEEecCCEEEeeeeECCHHHHHHHHH
Confidence 7888999998743 11 1499999999875 3579999999999999999999999999998
Q ss_pred cC
Q 019921 227 QH 228 (334)
Q Consensus 227 ~~ 228 (334)
+.
T Consensus 446 ~a 447 (581)
T 4eql_A 446 QA 447 (581)
T ss_dssp HC
T ss_pred HH
Confidence 54
No 40
>4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana}
Probab=98.25 E-value=5.3e-05 Score=71.05 Aligned_cols=71 Identities=8% Similarity=0.022 Sum_probs=55.2
Q ss_pred CCceeEEEEcCcchhhhhhhcccCCCCccCCCceEeccceEEEcC----CCcEEEeeccCceeeeCceeeChHHHHHHHh
Q 019921 151 SSHVGRILTRGAHVMLRYWDQFLAKPSVSTGEVWLDTGDIGSIDD----GGNVWLVGRRNGRIKSGGENVYPEEVEAVLL 226 (334)
Q Consensus 151 ~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGDl~~~~~----~G~l~~~GR~~d~i~~~G~~v~~~~iE~~l~ 226 (334)
.|+.+||++++.+ |. -.|++||..++.. ..++.|+||.++++.+.|+++++.+||+++.
T Consensus 390 ~G~~YelviTt~~---GL--------------~RYr~GD~v~v~g~~~~~p~~~~~gR~~~~l~~~Ge~~~~~~v~~al~ 452 (581)
T 4epl_A 390 IGEEYEVVITNYA---GL--------------YRYRLGDVVKVIGFYNNTPQLKFICRRNLILSINIDKNTERDLQLSVE 452 (581)
T ss_dssp TTCEEEEEEESTT---SC--------------SSEEEEEEEEEEEEETTEEEEEEEEETTCCBCSSSCCBCHHHHHHHHH
T ss_pred CCCeEEEEEeecc---ce--------------eeEEcCCEEEEecccCCCcEEEEEeecCCeEEeeeeECCHHHHHHHHH
Confidence 6788999998743 11 1499999999864 2468999999999999999999999999987
Q ss_pred cC------C--CcceEEEEE
Q 019921 227 QH------P--GIIGIVVVG 238 (334)
Q Consensus 227 ~~------~--~v~~~~v~~ 238 (334)
.. . .|.+..+..
T Consensus 453 ~a~~~l~~~~~~l~eft~~~ 472 (581)
T 4epl_A 453 SAAKRLSEEKIEVIDFSSYI 472 (581)
T ss_dssp HHHHHHHTTTCCEEEEEEEE
T ss_pred HHHHhhcccCCeEEEEEEec
Confidence 42 2 355665554
No 41
>4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera}
Probab=98.10 E-value=8.2e-06 Score=76.82 Aligned_cols=60 Identities=12% Similarity=0.143 Sum_probs=50.4
Q ss_pred CCceeEEEEcCcchhhhhhhcccCCCCccCCCceEeccceEEEcC----CCcEEEeeccCceeeeCceeeChHHHHHHHh
Q 019921 151 SSHVGRILTRGAHVMLRYWDQFLAKPSVSTGEVWLDTGDIGSIDD----GGNVWLVGRRNGRIKSGGENVYPEEVEAVLL 226 (334)
Q Consensus 151 ~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGDl~~~~~----~G~l~~~GR~~d~i~~~G~~v~~~~iE~~l~ 226 (334)
.|+.+||+++..+ |+| .|++||.++++. ..++.|+||.++++++.|+++++.+||+++.
T Consensus 395 ~G~~YelViTt~~---GL~--------------RYr~GD~v~v~~f~~~~p~i~~~gR~~~~l~~~Geki~~~~v~~av~ 457 (609)
T 4b2g_A 395 VGKEYELVITTYA---GLY--------------RYRVGDILRVTGFHNSAPQFHFVRRKNVLLSIDSDKTDEAELQKAVD 457 (609)
T ss_dssp TTCEEEEEEECTT---SCC--------------SEEEEEEEEEEEEETTEEEEEEEEETTCCBCSSSCCBCHHHHHHHHH
T ss_pred CCCeEEEehhhhh---hhh--------------heecCCEEEEeecCCCCcEEEEEEecCCeEEccccCCCHHHHHHHHH
Confidence 6788999998643 222 399999999873 4679999999999999999999999999987
Q ss_pred c
Q 019921 227 Q 227 (334)
Q Consensus 227 ~ 227 (334)
.
T Consensus 458 ~ 458 (609)
T 4b2g_A 458 N 458 (609)
T ss_dssp H
T ss_pred H
Confidence 3
No 42
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=69.71 E-value=19 Score=28.88 Aligned_cols=67 Identities=22% Similarity=0.292 Sum_probs=42.5
Q ss_pred ccceEEEcCC-CCHHHHHHHHHhhcceEEEe------chHH--HHHHHHHHhhccccCCCCCccEEEeccCCCCHHHHHH
Q 019921 6 VGACHVFIPK-FESKSALEAVEQHCVTSLIT------VPAI--MADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKE 76 (334)
Q Consensus 6 ~G~~~v~~~~-~~~~~~~~~l~~~~vt~~~~------~P~~--~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~ 76 (334)
+|-.++.... ..++.+++.++++++..+.. ++++ +..+++..+.... ...+ .++.||.+++++..+.
T Consensus 119 ~G~~Vi~LG~~vp~e~iv~~~~~~~~d~v~l~~S~l~~~~~~~~~~~i~~l~~~~~---~~~v-~v~vGG~~~~~~~a~~ 194 (215)
T 3ezx_A 119 NGFQIVDLGVDVLNENVVEEAAKHKGEKVLLVGSALMTTSMLGQKDLMDRLNEEKL---RDSV-KCMFGGAPVSDKWIEE 194 (215)
T ss_dssp TSCEEEECCSSCCHHHHHHHHHHTTTSCEEEEEECSSHHHHTHHHHHHHHHHHTTC---GGGS-EEEEESSSCCHHHHHH
T ss_pred CCCeEEEcCCCCCHHHHHHHHHHcCCCEEEEEchhcccCcHHHHHHHHHHHHHcCC---CCCC-EEEEECCCCCHHHHHH
Confidence 5666776654 78899999999999987666 3332 3334444433221 1123 3788999999875544
No 43
>1yj7_A ESCJ; mixed alpha/beta, extended linker, protein transport; 1.80A {Escherichia coli}
Probab=36.38 E-value=1.4e+02 Score=22.75 Aligned_cols=71 Identities=18% Similarity=0.184 Sum_probs=38.6
Q ss_pred hHHHHHHHhcCCCcceEEEEEEecCcceeEEEEEEEeccCccccccccccccchhhhhccHHHHHHHHHhcCCCCcccce
Q 019921 218 PEEVEAVLLQHPGIIGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPR 297 (334)
Q Consensus 218 ~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~ 297 (334)
-.+|++.|.+.++|..|-|...-.....+.+.|-|.++......- ......|+.++.. .++....-.
T Consensus 92 egELartI~~i~~V~~ARVhl~lP~~~~~~~sASV~l~~~~g~~l------------~~~q~~I~~LVa~-SV~gL~~en 158 (171)
T 1yj7_A 92 EQDIERLLSKIPGVIDCSVSLNVNNNESQPSSAAVLVISSPEVNL------------APSVIQIKNLVKN-SVDDLKLEN 158 (171)
T ss_dssp HHHHHHHHTTSTTEEEEEEEEEC-------CEEEEEEEECTTCCC------------GGGHHHHHHHHHH-HSTTCCGGG
T ss_pred HHHHHHHHHcCCCeeEEEEEEECCCCCCCCceEEEEEEeCCCCCC------------cHhHHHHHHHHHH-hcCCCCccc
Confidence 468999999999999987754433233444555555544311111 1112357777777 576666544
Q ss_pred EEEe
Q 019921 298 LFVL 301 (334)
Q Consensus 298 ~~~~ 301 (334)
+-++
T Consensus 159 VtVv 162 (171)
T 1yj7_A 159 ISVV 162 (171)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 4443
No 44
>1n0w_B Breast cancer type 2 susceptibility protein; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: j.97.1.1
Probab=28.53 E-value=8.1 Score=20.63 Aligned_cols=24 Identities=25% Similarity=0.462 Sum_probs=16.2
Q ss_pred CCCCCccchHHHHHHHHhhcccCCCC
Q 019921 308 LTSTGKIRRDEVRREVMSHLKSLPSN 333 (334)
Q Consensus 308 ~t~~GKv~r~~l~~~~~~~~~~l~~~ 333 (334)
.|++|| +-.+.+......+.||++
T Consensus 9 hTASGK--kv~IakesL~Kvk~lF~E 32 (35)
T 1n0w_B 9 HTASGK--KVKIAKESLDKVKNLFDE 32 (35)
T ss_dssp EETTSC--BCCCCHHHHHHTTTTTCC
T ss_pred eecCCc--EEEehHHHHHHHHHHhhh
Confidence 467887 445666677777777764
No 45
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=24.54 E-value=2.5e+02 Score=21.82 Aligned_cols=65 Identities=20% Similarity=0.170 Sum_probs=39.4
Q ss_pred ccceEEEcCC-CCHHHHHHHHHhhcceEEEech------HHHHHHHHHHhhccccCCCCCccEEEeccCCCCHHHH
Q 019921 6 VGACHVFIPK-FESKSALEAVEQHCVTSLITVP------AIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELM 74 (334)
Q Consensus 6 ~G~~~v~~~~-~~~~~~~~~l~~~~vt~~~~~P------~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~ 74 (334)
+|-.++.... ..++.+.+.++++++..+..+- ..+..+++..+.... .+.+ .++.||.+++++..
T Consensus 115 ~G~~v~~LG~~vp~~~l~~~~~~~~~d~v~lS~~~~~~~~~~~~~i~~l~~~~~---~~~~-~v~vGG~~~~~~~~ 186 (210)
T 1y80_A 115 GGFTVYNLGVDIEPGKFVEAVKKYQPDIVGMSALLTTTMMNMKSTIDALIAAGL---RDRV-KVIVGGAPLSQDFA 186 (210)
T ss_dssp TTCEEEECCSSBCHHHHHHHHHHHCCSEEEEECCSGGGTHHHHHHHHHHHHTTC---GGGC-EEEEESTTCCHHHH
T ss_pred CCCEEEECCCCCCHHHHHHHHHHcCCCEEEEeccccccHHHHHHHHHHHHhcCC---CCCC-eEEEECCCCCHHHH
Confidence 4566665554 6789999999999988776542 123444444433221 1123 37778888886554
Done!