Query 019922
Match_columns 334
No_of_seqs 212 out of 2009
Neff 9.9
Searched_HMMs 29240
Date Mon Mar 25 09:06:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019922.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019922hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mkt_A Multi antimicrobial ext 100.0 1.8E-31 6.1E-36 249.5 24.0 286 45-333 5-297 (460)
2 3mkt_A Multi antimicrobial ext 99.9 3.8E-23 1.3E-27 193.0 19.4 207 47-254 233-446 (460)
3 4hkr_A Calcium release-activat 48.8 99 0.0034 24.5 16.3 81 83-164 56-144 (214)
4 1pw4_A Glycerol-3-phosphate tr 44.9 1.6E+02 0.0053 25.6 24.6 13 197-209 151-163 (451)
5 2k1k_A Ephrin type-A receptor 39.5 33 0.0011 19.1 3.0 17 229-245 13-29 (38)
6 2jwa_A Receptor tyrosine-prote 28.4 90 0.0031 18.0 3.9 11 244-254 28-38 (44)
7 2ks1_B Epidermal growth factor 25.6 1E+02 0.0035 17.7 4.5 13 242-254 26-38 (44)
8 2l2t_A Receptor tyrosine-prote 19.9 1.4E+02 0.0048 17.2 4.3 7 248-254 31-37 (44)
9 4ev6_A Magnesium transport pro 13.8 3.9E+02 0.013 22.7 6.6 24 231-255 314-337 (339)
10 4ayb_Q DNA-directed RNA polyme 9.8 71 0.0024 21.3 0.3 25 1-25 5-29 (104)
No 1
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A
Probab=100.00 E-value=1.8e-31 Score=249.55 Aligned_cols=286 Identities=17% Similarity=0.318 Sum_probs=257.0
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhccCc
Q 019922 45 RRFWIESKKLWHIVGPTIFSRMASYSMFVITQAFAGHLGDLELAAISIANTVVVAFNFGLLLGMASALETLCGQAFGGKK 124 (334)
Q Consensus 45 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~~g~~~~a~~~i~~~~~~~~~~~~~~~i~~~~~~~~s~~~g~~~ 124 (334)
...++..|++++.++|.+++++...+.+.+|+.+++++|++++|+++++.++..+. ..+..+++.+..+.++|++|++|
T Consensus 5 ~~~~~~~k~~~~~~~p~~~~~~~~~~~~~v~~~~~~~lg~~~~~~~~~~~~i~~~~-~~~~~g~~~~~~~~is~~~g~~~ 83 (460)
T 3mkt_A 5 HRYKKEASNLIKLATPVLIASVAQTGMGFVDTIMAGGVSAIDMAAVSIAASIWLPS-ILFGVGLLMALVPVVAQLNGAGR 83 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTTTTSSHHHHHHHHHHHH-HHHHHHHHHHHGGGCTTTTSSSS
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHcCCC
Confidence 34568899999999999999999999999999999999999999999999997764 66788999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcchhhHHH
Q 019922 125 YYMLGVYMQRSWIVLFICCVLLLPLYVFASPVLKLLGQPDDVAELSGVVSLWLLPVHFSFAFQFPLQRFLQSQLKTMVIA 204 (334)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 204 (334)
+++.++.+++.+.+...++++..+++.+.++++.+++.+++..+.+..|+++..++.++..+.....+++++.||++.++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 163 (460)
T 3mkt_A 84 QHKIPFEVHQGLILALLVSVPIIAVLFQTQFIIRFMDVEEAMATKTVGYMHAVIFAVPAYLLFQALRSFTDGMSLTKPAM 163 (460)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCSSTTHHHHHHHHHHTTGGGHHHHHHHHHHHTTTTCTTSCCTTTH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHH
Confidence 99999999999999999998877777788999888888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHh-h---ccCchhHHHHHHHHHHHHHHHHHHHHHhcCCCC--c-cCCCCHHhHhhHHHHHHH
Q 019922 205 WVSLASLLVHLLVTWLFVYK-M---QLGLIGTAITLSFSWWVLIFGMFGYVACGGCPR--T-WTGFSMEAFSDLWEFVKL 277 (334)
Q Consensus 205 ~~~~~~~~~~i~l~~~li~~-~---~~g~~G~~ia~~i~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~l~~ 277 (334)
+.++++.++|+++++++++. + ++|+.|+++++.+++.+..++..+++++++... + +.++.+.+++.+|+++++
T Consensus 164 ~~~~~~~~~~i~l~~~li~~~~~~p~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 243 (460)
T 3mkt_A 164 VIGFIGLLLNIPLNWIFVYGKFGAPELGGVGCGVATAIVYWIMLLLLLFYIVTSKRLAHVKVFETFHKPQPKELIRLFRL 243 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHSCCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCCCSCCCCSSTTSSTTTSHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHhCcchhhhhhhhcccccCHHHHHHHHHH
Confidence 99999999999999999975 3 699999999999999999998888887762211 1 122334566789999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 019922 278 SVASGVMLCLENWYYRVLILMTGNLQNAKIAVDALSICMSINGWELMIPLSFFAGT 333 (334)
Q Consensus 278 ~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~aa~~i~~~i~~~~~~~~~~~~~a~ 333 (334)
++|..++...+++.+.+++.+++++|++ ++|+|+++.++.++.++++.+++++.
T Consensus 244 ~~p~~~~~~~~~~~~~~~~~~~~~~g~~--~va~~~i~~~i~~~~~~~~~~~~~a~ 297 (460)
T 3mkt_A 244 GFPVAAALFFEVTLFAVVALLVAPLGST--VVAAHQVALNFSSLVFMFPMSIGAAV 297 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCTTSSH--HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHcChH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999854 56799999999999999999998764
No 2
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A
Probab=99.91 E-value=3.8e-23 Score=193.01 Aligned_cols=207 Identities=14% Similarity=0.096 Sum_probs=190.1
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhccCchh
Q 019922 47 FWIESKKLWHIVGPTIFSRMASYSMFVITQAFAGHLGDLELAAISIANTVVVAFNFGLLLGMASALETLCGQAFGGKKYY 126 (334)
Q Consensus 47 ~~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~~g~~~~a~~~i~~~~~~~~~~~~~~~i~~~~~~~~s~~~g~~~~~ 126 (334)
+++..|++++.++|..++++...+...+|+.+++++|++++++|+++.++.++. ..+..+++++..|.+++++|++|++
T Consensus 233 ~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~va~~~i~~~i~~~~-~~~~~~~~~a~~p~i~~~~g~~~~~ 311 (460)
T 3mkt_A 233 QPKELIRLFRLGFPVAAALFFEVTLFAVVALLVAPLGSTVVAAHQVALNFSSLV-FMFPMSIGAAVSIRVGHKLGEQDTK 311 (460)
T ss_dssp TTSSTTTSHHHHHHHHHHHHHHHHHHHHHHHHTCTTSSHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred CHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 345788899999999999999999999999999999999999999999999985 6789999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcchhhHHHH
Q 019922 127 MLGVYMQRSWIVLFICCVLLLPL-YVFASPVLKLLGQPDDVAELSGVVSLWLLPVHFSFAFQFPLQRFLQSQLKTMVIAW 205 (334)
Q Consensus 127 ~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 205 (334)
+.++..++...+...++++.+++ +.+++++..++..|++..+.+..++++++++.++..++.+..+.+++.||++.+++
T Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 391 (460)
T 3mkt_A 312 GAAIAANVGLMTGLATACITALLTVLFREQIALLYTENQVVVALAMQLLLFAAIYQCMDAVQVVAAGSLRGYKDMTAIFH 391 (460)
T ss_dssp TTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 99999999999999999887766 55899999999888888888999999999999999999999999999999999999
Q ss_pred HHHHHH-HHHHHHHHHHHHh----hc-cCchhHHHHHHHHHHHHHHHHHHHHHhc
Q 019922 206 VSLASL-LVHLLVTWLFVYK----MQ-LGLIGTAITLSFSWWVLIFGMFGYVACG 254 (334)
Q Consensus 206 ~~~~~~-~~~i~l~~~li~~----~~-~g~~G~~ia~~i~~~~~~~~~~~~~~~~ 254 (334)
.++++. ++++++++++++. .+ +|+.|+|+|+.+++.+..++..++++|+
T Consensus 392 ~~~~~~~~~~i~l~~~l~~~~~~~~~~~G~~G~~~a~~~~~~~~~~~~~~~~~~~ 446 (460)
T 3mkt_A 392 RTFISYWVLGLPTGYILGMTNWLTEQPLGAKGFWLGFIIGLSAAALMLGQRLYWL 446 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSSCCSSHHHHHHHHHHHHHHHHHHHHHSSSSSS
T ss_pred HHHHHHHHHHHHHHHHHHhhhhccccccCchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999998 9999999999985 45 9999999999999999887776655544
No 3
>4hkr_A Calcium release-activated calcium channel protein; ORAI1, eukaryotic membrane protein, membran protein, ION channel, STIM, membrane; 3.35A {Drosophila melanogaster} PDB: 4hks_A
Probab=48.78 E-value=99 Score=24.48 Aligned_cols=81 Identities=17% Similarity=0.139 Sum_probs=46.8
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhh--------ccCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 019922 83 GDLELAAISIANTVVVAFNFGLLLGMASALETLCGQAF--------GGKKYYMLGVYMQRSWIVLFICCVLLLPLYVFAS 154 (334)
Q Consensus 83 g~~~~a~~~i~~~~~~~~~~~~~~~i~~~~~~~~s~~~--------g~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 154 (334)
.+.-+.+|++.+.+.-.. ..+..-+++-+.|.+-..- .+...++.+.++..+..++.++|+++.+.-...-
T Consensus 56 p~~LLi~fav~Ttllv~v-ml~AlMIsTcILPnIeav~~~h~~~~v~esPH~r~~~yIE~AW~fST~lGi~LFL~evall 134 (214)
T 4hkr_A 56 PPGMLIAFAICTTLLVAV-HMLALMISTCILPNIETVSNLHSISLVHESPHERLHWYIETAWAFSTLLGLILFLLEIAIL 134 (214)
T ss_dssp ---CHHHHHHHHHHHHHH-HHHHHHHHHHTTTC----------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHH-HHHHHHHHHHhHHHHHHHhhcccccccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445678888888886653 4566666666666554432 1233467888888888888888876665544334
Q ss_pred HHHHHcCCCH
Q 019922 155 PVLKLLGQPD 164 (334)
Q Consensus 155 ~~~~~~~~~~ 164 (334)
-++.++..+.
T Consensus 135 ~WVKF~~~~~ 144 (214)
T 4hkr_A 135 CWVKFYDLSR 144 (214)
T ss_dssp HHHHHTTTCH
T ss_pred heEEeecCCc
Confidence 4555554443
No 4
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=44.86 E-value=1.6e+02 Score=25.65 Aligned_cols=13 Identities=8% Similarity=0.020 Sum_probs=5.6
Q ss_pred cchhhHHHHHHHH
Q 019922 197 QLKTMVIAWVSLA 209 (334)
Q Consensus 197 ~g~~~~~~~~~~~ 209 (334)
.+|.+........
T Consensus 151 ~~r~~~~~~~~~~ 163 (451)
T 1pw4_A 151 KERGGIVSVWNCA 163 (451)
T ss_dssp THHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHH
Confidence 4444444444333
No 5
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=39.53 E-value=33 Score=19.10 Aligned_cols=17 Identities=12% Similarity=0.120 Sum_probs=7.9
Q ss_pred chhHHHHHHHHHHHHHH
Q 019922 229 LIGTAITLSFSWWVLIF 245 (334)
Q Consensus 229 ~~G~~ia~~i~~~~~~~ 245 (334)
+.|+.++.+++-.+...
T Consensus 13 IAGiVvG~v~gv~li~~ 29 (38)
T 2k1k_A 13 IVAVIFGLLLGAALLLG 29 (38)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred eeeeehHHHHHHHHHHH
Confidence 34555555554443333
No 6
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=28.38 E-value=90 Score=17.99 Aligned_cols=11 Identities=0% Similarity=-0.490 Sum_probs=5.4
Q ss_pred HHHHHHHHHhc
Q 019922 244 IFGMFGYVACG 254 (334)
Q Consensus 244 ~~~~~~~~~~~ 254 (334)
.+...+|++|+
T Consensus 28 ~l~~~~~~RRR 38 (44)
T 2jwa_A 28 GVVFGILIKRR 38 (44)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHhheehh
Confidence 33444555555
No 7
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=25.61 E-value=1e+02 Score=17.72 Aligned_cols=13 Identities=15% Similarity=0.227 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHhc
Q 019922 242 VLIFGMFGYVACG 254 (334)
Q Consensus 242 ~~~~~~~~~~~~~ 254 (334)
+..+..+++.+|+
T Consensus 26 ii~~~~~~~~RRr 38 (44)
T 2ks1_B 26 VVALGIGLFMRRR 38 (44)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhhh
Confidence 3333444444444
No 8
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=19.91 E-value=1.4e+02 Score=17.17 Aligned_cols=7 Identities=29% Similarity=0.083 Sum_probs=2.8
Q ss_pred HHHHHhc
Q 019922 248 FGYVACG 254 (334)
Q Consensus 248 ~~~~~~~ 254 (334)
+++.+|+
T Consensus 31 ~~~~RRR 37 (44)
T 2l2t_A 31 AVYVRRK 37 (44)
T ss_dssp HHHHHTT
T ss_pred HHHhhhh
Confidence 3344433
No 9
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=13.83 E-value=3.9e+02 Score=22.66 Aligned_cols=24 Identities=17% Similarity=0.203 Sum_probs=10.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhcC
Q 019922 231 GTAITLSFSWWVLIFGMFGYVACGG 255 (334)
Q Consensus 231 G~~ia~~i~~~~~~~~~~~~~~~~~ 255 (334)
|-++...+ .++.+++.+++++|++
T Consensus 314 gy~~~l~~-m~~~~~~~~~~fkrk~ 337 (339)
T 4ev6_A 314 GFWLVMAL-MVVIIMIFVYIFRRSG 337 (339)
T ss_dssp HHHHHHHH-HHHHHHHHHHHHHTTT
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHcC
Confidence 44443333 3334445555555543
No 10
>4ayb_Q DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2wb1_J 4b1o_Q 4b1p_J 2y0s_J 2waq_Q
Probab=9.80 E-value=71 Score=21.34 Aligned_cols=25 Identities=24% Similarity=0.302 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCcCCCCCCCCCCccc
Q 019922 1 MPSNGKKEGTNVPLLQDSASTNVPL 25 (334)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~ 25 (334)
|.++++.++++.|.++.+...+|..
T Consensus 5 ~st~Ed~e~~~e~evse~~~veE~~ 29 (104)
T 4ayb_Q 5 MSTEEEKEGTNDEEVSEEREVEETS 29 (104)
T ss_dssp -------------------------
T ss_pred cccccccccCCccccccccceeccc
Confidence 4456777788888777555554443
Done!