Query 019922
Match_columns 334
No_of_seqs 212 out of 2009
Neff 9.9
Searched_HMMs 13730
Date Mon Mar 25 09:06:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019922.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/019922hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pw4a_ f.38.1.1 (A:) Glycerol 73.6 21 0.0016 29.0 21.2 27 226-252 406-432 (447)
2 d1pv7a_ f.38.1.2 (A:) Lactose 32.3 1E+02 0.0075 23.7 18.6 12 226-237 375-386 (417)
3 d2yvxa3 f.57.1.1 (A:276-448) M 13.0 2.2E+02 0.016 20.0 6.9 43 105-149 54-98 (173)
4 d2nwwa1 f.49.1.1 (A:12-416) Pr 4.7 7.2E+02 0.052 19.4 7.8 27 43-69 31-58 (405)
5 d1pw4a_ f.38.1.1 (A:) Glycerol 4.2 7.2E+02 0.053 18.7 26.8 14 196-209 147-160 (447)
6 d1mb6a_ g.3.6.2 (A:) Huwentoxi 3.6 2.1E+02 0.015 13.8 1.1 9 2-10 11-19 (35)
7 d3dhwa1 f.58.1.1 (A:6-208) D-m 3.2 7E+02 0.051 16.8 5.2 33 49-81 128-160 (203)
8 d1jvra_ a.61.1.2 (A:) HTLV-II 2.7 3.6E+02 0.027 17.7 2.0 17 264-280 40-56 (137)
9 d1fftb2 f.17.2.1 (B:27-117) Cy 2.6 2.5E+02 0.018 17.0 1.1 19 271-289 61-79 (91)
10 d1lghb_ f.3.1.1 (B:) Light-har 2.5 3.2E+02 0.023 14.2 1.2 23 124-146 10-32 (43)
No 1
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=73.57 E-value=21 Score=29.04 Aligned_cols=27 Identities=7% Similarity=-0.012 Sum_probs=14.7
Q ss_pred ccCchhHHHHHHHHHHHHHHHHHHHHH
Q 019922 226 QLGLIGTAITLSFSWWVLIFGMFGYVA 252 (334)
Q Consensus 226 ~~g~~G~~ia~~i~~~~~~~~~~~~~~ 252 (334)
..|..+..+......++..++......
T Consensus 406 ~~g~~~~~~~~~~~~~~~~~~~~~~~~ 432 (447)
T d1pw4a_ 406 FFGWDGGFMVMIGGSILAVILLIVVMI 432 (447)
T ss_dssp SSCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567666665555555555544444443
No 2
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=32.26 E-value=1e+02 Score=23.72 Aligned_cols=12 Identities=25% Similarity=0.609 Sum_probs=5.3
Q ss_pred ccCchhHHHHHH
Q 019922 226 QLGLIGTAITLS 237 (334)
Q Consensus 226 ~~g~~G~~ia~~ 237 (334)
++|.....+-..
T Consensus 375 ~~g~~~~~~~~~ 386 (417)
T d1pv7a_ 375 SIGFQGAYLVLG 386 (417)
T ss_dssp HHCHHHHHHHHH
T ss_pred HHCHHHHHHHHH
Confidence 345554443333
No 3
>d2yvxa3 f.57.1.1 (A:276-448) Mg2+ transporter MgtE {Thermus thermophilus [TaxId: 274]}
Probab=12.99 E-value=2.2e+02 Score=19.98 Aligned_cols=43 Identities=21% Similarity=-0.034 Sum_probs=25.7
Q ss_pred HHHHHHhHHHHHHhh--hccCchhhHHHHHHHHHHHHHHHHHHHHHH
Q 019922 105 LLGMASALETLCGQA--FGGKKYYMLGVYMQRSWIVLFICCVLLLPL 149 (334)
Q Consensus 105 ~~~i~~~~~~~~s~~--~g~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 149 (334)
..|..+. +.+-|. .|+-+.++.++.+.+-...++..++.+.+.
T Consensus 54 N~G~Qs~--ti~iR~La~g~i~~~~~~~~l~kE~~vgll~G~~l~~i 98 (173)
T d2yvxa3 54 NTGNQSA--TLIIRALATRDLDLRDWRRVFLKEMGVGLLLGLTLSFL 98 (173)
T ss_dssp HHHHHHH--HHHHHHHHTTCSCSSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHH--HHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444 344444 444466678888888777777777655443
No 4
>d2nwwa1 f.49.1.1 (A:12-416) Proton glutamate symport protein {Pyrococcus horikoshii [TaxId: 53953]}
Probab=4.74 E-value=7.2e+02 Score=19.42 Aligned_cols=27 Identities=19% Similarity=0.231 Sum_probs=15.3
Q ss_pred hhHHHHHHHHHHHHh-HHHHHHHHHHHH
Q 019922 43 LTRRFWIESKKLWHI-VGPTIFSRMASY 69 (334)
Q Consensus 43 ~~~~~~~~~~~~~~~-~~p~~~~~~~~~ 69 (334)
+.+...+.+.+++|+ ..|+++..+...
T Consensus 31 ~l~~~g~lFi~lL~m~v~PLIf~sii~g 58 (405)
T d2nwwa1 31 YVKPFGDLFVRLLKMLVMPIVFASLVVG 58 (405)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556677777774 445555555443
No 5
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=4.18 E-value=7.2e+02 Score=18.67 Aligned_cols=14 Identities=7% Similarity=0.024 Sum_probs=5.9
Q ss_pred HcchhhHHHHHHHH
Q 019922 196 SQLKTMVIAWVSLA 209 (334)
Q Consensus 196 ~~g~~~~~~~~~~~ 209 (334)
..+|.+...+.+..
T Consensus 147 ~~~r~~~~~~~~~~ 160 (447)
T d1pw4a_ 147 QKERGGIVSVWNCA 160 (447)
T ss_dssp TTHHHHHHHHHHHH
T ss_pred hhcccccccccccc
Confidence 34444444443333
No 6
>d1mb6a_ g.3.6.2 (A:) Huwentoxin-IV {Chinese bird spider (Selenocosmia huwena) [TaxId: 29017]}
Probab=3.63 E-value=2.1e+02 Score=13.79 Aligned_cols=9 Identities=33% Similarity=0.364 Sum_probs=4.5
Q ss_pred CCCCCCCCC
Q 019922 2 PSNGKKEGT 10 (334)
Q Consensus 2 ~~~~~~~~~ 10 (334)
|+++++-++
T Consensus 11 psndqcck~ 19 (35)
T d1mb6a_ 11 PSNDQCCKS 19 (35)
T ss_dssp SSSCCBCTT
T ss_pred CCccccccc
Confidence 555555444
No 7
>d3dhwa1 f.58.1.1 (A:6-208) D-methionine transport system permease protein MetI {Escherichia coli [TaxId: 562]}
Probab=3.17 E-value=7e+02 Score=16.79 Aligned_cols=33 Identities=15% Similarity=0.084 Sum_probs=16.7
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhc
Q 019922 49 IESKKLWHIVGPTIFSRMASYSMFVITQAFAGH 81 (334)
Q Consensus 49 ~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~ 81 (334)
...|-.+-.+.|.++..........+....+..
T Consensus 128 ~~~~vilP~~~p~i~~~~~~~~~~~i~~~~~~~ 160 (203)
T d3dhwa1 128 IVRKVLLPEALPGLVNAATITLITLVGYSAMGG 160 (203)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred hhHHhhHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555555555554444443
No 8
>d1jvra_ a.61.1.2 (A:) HTLV-II matrix protein {Human T-cell leukemia virus type 2 [TaxId: 11909]}
Probab=2.73 E-value=3.6e+02 Score=17.65 Aligned_cols=17 Identities=35% Similarity=0.479 Sum_probs=13.4
Q ss_pred CHHhHhhHHHHHHHHHH
Q 019922 264 SMEAFSDLWEFVKLSVA 280 (334)
Q Consensus 264 ~~~~~~~~~~~l~~~~p 280 (334)
...++..+|+++|+++-
T Consensus 40 S~~DF~qLr~flklalk 56 (137)
T d1jvra_ 40 SDFDFQQLRRFLKLALK 56 (137)
T ss_dssp STTTHHHHHHHHHHHHT
T ss_pred CcccHHHHHHHHHHHHh
Confidence 34577889999999874
No 9
>d1fftb2 f.17.2.1 (B:27-117) Cytochrome O ubiquinol oxidase, subunit II {Escherichia coli [TaxId: 562]}
Probab=2.62 E-value=2.5e+02 Score=17.01 Aligned_cols=19 Identities=21% Similarity=0.107 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 019922 271 LWEFVKLSVASGVMLCLEN 289 (334)
Q Consensus 271 ~~~~l~~~~p~~~~~~~~~ 289 (334)
..++.-..+|..+...+..
T Consensus 61 ~lEi~WtiIP~iil~~iav 79 (91)
T d1fftb2 61 KVEAVVWTVPILIIIFLAV 79 (91)
T ss_dssp HHHHHTTHHHHHHHHHHHH
T ss_pred eehhhHHHHHHHHHHHHHH
Confidence 4466666688777555443
No 10
>d1lghb_ f.3.1.1 (B:) Light-harvesting complex subunits {Rhodospirillum molischianum [TaxId: 1083]}
Probab=2.54 E-value=3.2e+02 Score=14.20 Aligned_cols=23 Identities=4% Similarity=0.095 Sum_probs=13.3
Q ss_pred chhhHHHHHHHHHHHHHHHHHHH
Q 019922 124 KYYMLGVYMQRSWIVLFICCVLL 146 (334)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~i~~ 146 (334)
+.++....+.++...-..++++.
T Consensus 10 EA~EfH~~~~~g~~~F~~iAvvA 32 (43)
T d1lghb_ 10 EAIAVHDQFKTTFSAFIILAAVA 32 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666655555443
Done!