Query 019923
Match_columns 334
No_of_seqs 146 out of 1189
Neff 7.7
Searched_HMMs 46136
Date Fri Mar 29 05:36:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019923.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019923hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1957 URH1 Inosine-uridine n 100.0 6.2E-84 1.3E-88 599.9 33.7 308 18-333 1-309 (311)
2 PLN02717 uridine nucleosidase 100.0 3E-82 6.6E-87 599.8 36.3 314 20-333 1-315 (316)
3 PRK09955 rihB ribonucleoside h 100.0 1.1E-81 2.4E-86 594.3 36.7 305 19-333 3-308 (313)
4 cd02653 nuc_hydro_3 NH_3: A su 100.0 2.9E-78 6.3E-83 573.2 35.4 304 21-333 1-308 (320)
5 PRK10443 rihA ribonucleoside h 100.0 5.9E-78 1.3E-82 569.3 36.2 306 19-333 2-309 (311)
6 cd02651 nuc_hydro_IU_UC_XIUA n 100.0 4.3E-78 9.3E-83 569.3 34.1 301 21-331 1-302 (302)
7 PRK10768 ribonucleoside hydrol 100.0 1.1E-77 2.5E-82 566.2 35.2 300 19-333 2-302 (304)
8 cd02650 nuc_hydro_CaPnhB NH_hy 100.0 3.5E-77 7.6E-82 563.6 34.4 303 21-328 1-304 (304)
9 cd02649 nuc_hydro_CeIAG nuc_hy 100.0 6.4E-77 1.4E-81 560.5 34.8 299 20-327 1-305 (306)
10 PTZ00313 inosine-adenosine-gua 100.0 1.3E-74 2.9E-79 549.5 35.3 302 19-332 2-324 (326)
11 cd02654 nuc_hydro_CjNH nuc_hyd 100.0 9.4E-74 2E-78 542.2 32.2 298 21-327 1-318 (318)
12 cd00455 nuc_hydro nuc_hydro: N 100.0 1.1E-71 2.4E-76 523.8 34.3 295 22-327 1-295 (295)
13 PF01156 IU_nuc_hydro: Inosine 100.0 3.7E-73 8E-78 538.2 23.9 304 19-333 1-311 (312)
14 cd02647 nuc_hydro_TvIAG nuc_hy 100.0 4E-71 8.6E-76 521.8 31.3 291 20-328 1-308 (312)
15 cd02648 nuc_hydro_1 NH_1: A su 100.0 1.2E-69 2.6E-74 513.8 31.4 277 19-296 1-348 (367)
16 KOG2938 Predicted inosine-urid 100.0 2.2E-55 4.7E-60 413.7 25.7 315 12-333 14-334 (350)
17 cd02652 nuc_hydro_2 NH_2: A su 100.0 9.8E-47 2.1E-51 351.2 21.8 239 22-285 1-265 (293)
18 PF07632 DUF1593: Protein of u 98.5 1.1E-07 2.4E-12 86.8 4.7 143 21-171 1-159 (260)
19 PF14097 SpoVAE: Stage V sporu 75.3 3.2 7E-05 35.7 3.3 26 33-58 71-96 (180)
20 PF10609 ParA: ParA/MinD ATPas 74.8 8.6 0.00019 29.1 5.1 54 21-81 3-57 (81)
21 KOG2938 Predicted inosine-urid 73.8 1.8 3.9E-05 41.8 1.5 87 119-206 191-292 (350)
22 COG2248 Predicted hydrolase (m 68.3 11 0.00023 34.9 5.1 77 65-146 119-212 (304)
23 PF00455 DeoRC: DeoR C termina 68.2 21 0.00045 30.4 6.8 74 121-210 29-102 (161)
24 PRK09802 DNA-binding transcrip 63.2 32 0.00069 31.9 7.5 74 121-210 116-189 (269)
25 PF03054 tRNA_Me_trans: tRNA m 61.4 28 0.00061 33.8 7.0 59 20-82 1-67 (356)
26 COG0482 TrmU Predicted tRNA(5- 60.1 48 0.001 32.2 8.2 56 18-74 2-63 (356)
27 PF01168 Ala_racemase_N: Alani 57.5 46 0.001 29.2 7.3 41 18-58 109-157 (218)
28 PRK13509 transcriptional repre 56.0 50 0.0011 30.2 7.5 72 121-210 103-174 (251)
29 COG2185 Sbm Methylmalonyl-CoA 49.9 45 0.00099 28.0 5.5 56 30-90 52-107 (143)
30 cd02065 B12-binding_like B12 b 49.5 70 0.0015 25.1 6.6 65 21-91 30-94 (125)
31 cd02072 Glm_B12_BD B12 binding 43.8 54 0.0012 27.0 5.0 46 41-88 47-92 (128)
32 PRK10681 DNA-binding transcrip 42.4 1.1E+02 0.0024 27.9 7.5 71 123-209 104-174 (252)
33 PRK10411 DNA-binding transcrip 42.4 1E+02 0.0023 27.9 7.2 72 121-209 103-174 (240)
34 PRK02628 nadE NAD synthetase; 40.5 71 0.0015 33.8 6.6 57 18-75 360-422 (679)
35 COG1349 GlpR Transcriptional r 37.9 1.5E+02 0.0032 27.2 7.6 75 120-210 100-174 (253)
36 TIGR01849 PHB_depoly_PhaZ poly 37.6 1.2E+02 0.0026 30.0 7.3 58 120-177 153-213 (406)
37 cd00717 URO-D Uroporphyrinogen 35.4 2E+02 0.0042 27.3 8.3 26 198-225 188-213 (335)
38 PRK10906 DNA-binding transcrip 35.0 1.9E+02 0.004 26.5 7.7 72 122-209 102-173 (252)
39 TIGR00044 pyridoxal phosphate 34.6 1.7E+02 0.0037 26.2 7.3 40 19-58 120-169 (229)
40 cd03307 Mta_CmuA_like MtaA_Cmu 34.2 1.6E+02 0.0034 27.8 7.4 29 197-225 181-209 (326)
41 COG1206 Gid NAD(FAD)-utilizing 33.5 19 0.00042 34.7 0.9 24 127-150 120-144 (439)
42 PRK02261 methylaspartate mutas 32.7 82 0.0018 26.0 4.5 54 30-88 43-96 (137)
43 COG0489 Mrp ATPases involved i 31.7 1.2E+02 0.0027 27.9 6.0 56 19-81 167-222 (265)
44 cd01993 Alpha_ANH_like_II This 31.1 1.6E+02 0.0034 24.8 6.3 55 21-75 1-61 (185)
45 smart00870 Asparaginase Aspara 31.0 1.2E+02 0.0027 28.8 6.0 62 27-91 56-120 (323)
46 cd00553 NAD_synthase NAD+ synt 30.9 1.6E+02 0.0035 26.6 6.6 57 18-75 22-79 (248)
47 PF01171 ATP_bind_3: PP-loop f 30.1 3E+02 0.0065 23.4 7.9 57 22-82 2-63 (182)
48 cd06820 PLPDE_III_LS_D-TA_like 30.0 2.1E+02 0.0046 27.2 7.6 41 18-58 120-169 (353)
49 TIGR00640 acid_CoA_mut_C methy 29.9 94 0.002 25.5 4.4 44 42-87 51-94 (132)
50 PRK14665 mnmA tRNA-specific 2- 29.6 3E+02 0.0064 26.8 8.4 57 18-75 4-61 (360)
51 PRK04183 glutamyl-tRNA(Gln) am 29.2 94 0.002 31.0 5.0 63 25-91 130-194 (419)
52 PRK10696 tRNA 2-thiocytidine b 29.1 2.1E+02 0.0046 26.1 7.1 59 17-81 27-91 (258)
53 COG1927 Mtd Coenzyme F420-depe 28.5 2.3E+02 0.005 25.6 6.7 73 122-207 18-94 (277)
54 cd06819 PLPDE_III_LS_D-TA Type 28.4 3.5E+02 0.0076 25.7 8.8 39 18-56 124-171 (358)
55 PRK10434 srlR DNA-bindng trans 28.3 2.5E+02 0.0054 25.7 7.4 71 124-209 104-174 (256)
56 PRK12342 hypothetical protein; 27.8 4E+02 0.0087 24.6 8.6 75 115-209 33-118 (254)
57 PF09078 CheY-binding: CheY bi 27.4 52 0.0011 23.8 2.1 23 18-40 34-56 (65)
58 PRK09461 ansA cytoplasmic aspa 27.3 1.3E+02 0.0028 29.0 5.4 62 27-91 62-124 (335)
59 PRK13980 NAD synthetase; Provi 26.8 2.8E+02 0.006 25.5 7.4 57 18-75 29-86 (265)
60 TIGR00420 trmU tRNA (5-methyla 26.1 2.9E+02 0.0064 26.6 7.7 58 20-81 1-67 (352)
61 cd06814 PLPDE_III_DSD_D-TA_lik 25.9 2.9E+02 0.0063 26.9 7.8 39 18-56 132-179 (379)
62 KOG3022 Predicted ATPase, nucl 25.6 86 0.0019 29.5 3.7 57 19-81 157-214 (300)
63 PRK11096 ansB L-asparaginase I 25.5 1.9E+02 0.004 28.1 6.2 61 27-91 81-142 (347)
64 TIGR00552 nadE NAD+ synthetase 25.4 2.5E+02 0.0055 25.4 6.9 58 18-75 21-78 (250)
65 PRK00143 mnmA tRNA-specific 2- 24.9 3.1E+02 0.0066 26.4 7.6 57 21-81 2-67 (346)
66 PF02540 NAD_synthase: NAD syn 24.2 2.6E+02 0.0057 25.4 6.7 57 18-75 17-74 (242)
67 PRK10660 tilS tRNA(Ile)-lysidi 24.1 3.3E+02 0.0071 27.1 7.9 57 17-74 13-75 (436)
68 TIGR02432 lysidine_TilS_N tRNA 23.8 2.7E+02 0.0059 23.6 6.5 58 21-81 1-62 (189)
69 PRK06015 keto-hydroxyglutarate 23.7 3.9E+02 0.0084 23.7 7.4 29 123-153 132-163 (201)
70 PRK00115 hemE uroporphyrinogen 23.7 4.2E+02 0.009 25.3 8.3 39 185-225 169-222 (346)
71 CHL00181 cbbX CbbX; Provisiona 23.7 1.4E+02 0.0031 27.9 4.9 48 119-166 144-191 (287)
72 PRK03359 putative electron tra 23.5 5.2E+02 0.011 23.8 8.5 77 115-210 34-122 (256)
73 cd01995 ExsB ExsB is a transcr 23.1 3.3E+02 0.0071 22.7 6.7 51 22-74 2-52 (169)
74 PF02310 B12-binding: B12 bind 23.0 3E+02 0.0065 21.2 6.1 59 21-87 31-91 (121)
75 cd02067 B12-binding B12 bindin 22.9 2.2E+02 0.0049 22.2 5.4 61 24-89 33-93 (119)
76 TIGR00268 conserved hypothetic 22.5 3E+02 0.0066 25.0 6.8 56 18-75 11-66 (252)
77 TIGR00519 asnASE_I L-asparagin 22.5 1.6E+02 0.0034 28.4 5.0 62 26-91 57-119 (336)
78 COG0603 Predicted PP-loop supe 22.4 4.9E+02 0.011 23.6 7.8 55 19-75 2-56 (222)
79 cd07376 PLPDE_III_DSD_D-TA_lik 22.2 4.7E+02 0.01 24.7 8.4 40 18-57 110-159 (345)
80 TIGR00342 thiazole biosynthesi 22.1 4.2E+02 0.0092 25.7 8.1 56 19-75 172-227 (371)
81 cd00411 Asparaginase Asparagin 22.1 1.5E+02 0.0033 28.2 4.9 62 26-91 58-120 (323)
82 TIGR02153 gatD_arch glutamyl-t 21.3 1.4E+02 0.003 29.6 4.5 64 25-91 117-182 (404)
83 TIGR01501 MthylAspMutase methy 21.2 2.1E+02 0.0045 23.7 4.9 45 41-87 49-93 (134)
84 cd06822 PLPDE_III_YBL036c_euk 21.1 4.2E+02 0.0091 23.9 7.3 41 18-58 116-167 (227)
85 PF06508 QueC: Queuosine biosy 20.7 2.7E+02 0.0058 24.7 5.9 52 22-75 2-53 (209)
86 cd00635 PLPDE_III_YBL036c_like 20.6 4.2E+02 0.009 23.4 7.2 40 19-58 116-165 (222)
87 cd06824 PLPDE_III_Yggs_like Py 20.5 4.9E+02 0.011 23.0 7.6 38 21-58 122-167 (224)
No 1
>COG1957 URH1 Inosine-uridine nucleoside N-ribohydrolase [Nucleotide transport and metabolism]
Probab=100.00 E-value=6.2e-84 Score=599.90 Aligned_cols=308 Identities=41% Similarity=0.655 Sum_probs=293.7
Q ss_pred CCceEEEecCCCchHHHHHHHHHcCCCCeEEEEEEecCCCChHHHHHHHHHHHHHhCCCCCCeeeCCCCCCCCCCCcccc
Q 019923 18 NPAKLIIDTDPGIDDSMTILMAFQTPELEILGLTTIFGNVTTEDATRNALTLCEMAGCPGVPVAEGSPEPLKGGKPRVAE 97 (334)
Q Consensus 18 ~~~~viiDtD~G~DD~~AL~~~l~~p~i~v~gIt~v~Gn~~~~~~~~na~~ll~~~g~~~IPV~~Ga~~pl~~~~~~~~~ 97 (334)
+++|||||||+|+||++||++++++|++||+|||+|+||++++++++|++.+|+.+|+.+||||+|+.+||.++. ..++
T Consensus 1 ~~~kiiiD~DpG~DDaiAlllal~~p~i~l~giTtv~GNv~le~t~~Na~~~l~~~g~~~iPV~~Ga~~Pl~r~~-~~a~ 79 (311)
T COG1957 1 MMRKIIIDCDPGHDDAIALLLALASPEIDLLGITTVAGNVPLEQTTRNALSVLELLGRADIPVYAGAARPLLREP-ITAP 79 (311)
T ss_pred CCceEEEeCCCChhHHHHHHHHhcCCCceEEEEEEecCcccHhHHHHHHHHHHHHcCCCCCCeecCCCCCcCCCC-cchh
Confidence 478999999999999999999999999999999999999999999999999999999999999999999999975 5678
Q ss_pred cccCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHcCCCceEEEEecchhHHHHHHhhCcchHhccceEEEecCCCCCCCC
Q 019923 98 FAHGSDGMGNISLTPPKAKKCDKNASEFLVDKVSEYPGEVSILALGPLTNLALAIKRDSSFASKVKNIVVLGGAFFALGN 177 (334)
Q Consensus 98 ~~hg~dGlg~~~~~~~~~~~~~~~a~~~i~~~~~~~p~~vtila~GpLTNlA~al~~~P~~~~~i~~iviMGG~~~~~GN 177 (334)
++||++||++..+|.|...+.+.+|+++|+++++++|+++||+++|||||||+||+++|+++++||+||||||++..+||
T Consensus 80 ~iHG~~Gl~~~~lp~~~~~~~~~~A~~~ii~~l~~~~g~vtlva~GPLTNiAlAl~~~P~i~~~ik~iviMGGa~~~~GN 159 (311)
T COG1957 80 EIHGESGLGGPELPEPTRKLESKHAVDAIIDTLMANPGEVTLVATGPLTNIALALRKDPEIAKRIKEIVIMGGAFFVPGN 159 (311)
T ss_pred hhcCCcCCCCCCCCcccccccCCcHHHHHHHHHHhCCCcEEEEecCChHHHHHHHHhCcchhhhhcEEEEecCccCCCCC
Confidence 99999999999888888887789999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccccccCCHHHHHHHHHcCCcEEEEeccccceeecCHHHHHHHHhcCCcHHHHHHHHHHHHHHhccccCCCccccc
Q 019923 178 VNPAAEANIYGDPEAADVVFTSGANIAVVGINITTQVKLTDADFLELRQSKGRYVQLLGDMCKFYRDWHVKSDGVHGIFL 257 (334)
Q Consensus 178 ~~~~aEfN~~~DPeAA~~Vl~s~~~i~~v~ldvt~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l 257 (334)
+||.||||+|+|||||++||+||+|++|+|||+|+|+..+++.+.++.+.+++.++++.+++++|..++.+.++..|.++
T Consensus 160 vtp~AEfNi~~DPeAA~iVf~sg~~i~mv~LdvT~q~~~t~~~~~~~~~~~~~~~~~~~d~l~~~~~~~~~~~g~~g~~~ 239 (311)
T COG1957 160 VTPAAEFNIWVDPEAAKIVFTSGWPITMVPLDVTHQVLLTPDVLARLRAAGGPAAELVADLLDFYLAYYKSRQGLDGAPL 239 (311)
T ss_pred cCcchhhhhccCHHHHHHHHhCCCceEEechhhhhhhcCCHHHHHHHHHhCCccHHHHHHHHHHHHHHHhhccCCCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988878899999
Q ss_pred chHHHHHHHhcCCceeeEEeeEEEEecC-CcceeEEEecCCcccccCCCCCCCCCcEEEeecCHHHHHHHHHHHHhc
Q 019923 258 HDPVSFVALVRPDLFTFKKGVVRVETQG-ICMGHTLMDQGLKRWNVSNPWTGYSPVSVAWTVNVDKVLNYIKRLLMK 333 (334)
Q Consensus 258 ~D~la~a~~~~p~l~~~~~~~v~V~~~g-~~~G~tv~d~~~~~~~~~~~~~~~~~v~v~~~vD~~~f~~~l~~~l~~ 333 (334)
||++|++++++|++|++++.+|+|++.| .++|+|++|+.. .+...+|++++.++|.++|++++.++|.+
T Consensus 240 hD~~a~a~l~~p~l~~~~~~~V~Ve~~~~lt~G~Tv~d~~~-------~~~~~~n~~v~~~vD~~~f~~~i~~~l~~ 309 (311)
T COG1957 240 HDPLAVAYLLDPELFTTREANVDVETAGGLTRGMTVVDWRG-------VLGKPPNAQVAVDVDVEGFLDLILEALAR 309 (311)
T ss_pred ccHHHHHHHhChhhhcceEEEEEEEeCCCCcCcceEEEecc-------cCCCCCCeEEeeccCHHHHHHHHHHHHhc
Confidence 9999999999999999999999999997 999999999752 24567899999999999999999999875
No 2
>PLN02717 uridine nucleosidase
Probab=100.00 E-value=3e-82 Score=599.79 Aligned_cols=314 Identities=72% Similarity=1.141 Sum_probs=290.1
Q ss_pred ceEEEecCCCchHHHHHHHHHcCCCCeEEEEEEecCCCChHHHHHHHHHHHHHhCCCCCCeeeCCCCCCCCC-CCccccc
Q 019923 20 AKLIIDTDPGIDDSMTILMAFQTPELEILGLTTIFGNVTTEDATRNALTLCEMAGCPGVPVAEGSPEPLKGG-KPRVAEF 98 (334)
Q Consensus 20 ~~viiDtD~G~DD~~AL~~~l~~p~i~v~gIt~v~Gn~~~~~~~~na~~ll~~~g~~~IPV~~Ga~~pl~~~-~~~~~~~ 98 (334)
+|||||||+|+||++||+|||.+|+++|+|||||+||++.+++++|++++|+++|+.+||||+|+..||.+. ..+.+.+
T Consensus 1 ~~vIiDtD~GiDDa~Al~~al~~~~~~l~gIt~v~GN~~~~~~~~na~~ll~~~g~~diPV~~Ga~~pl~~~~~~~~~~~ 80 (316)
T PLN02717 1 KKLIIDTDPGIDDAMAILMALRSPEVEVIGLTTIFGNVTTKLATRNALHLLEMAGRPDVPVAEGSHEPLKGGTKPRIADF 80 (316)
T ss_pred CcEEEECCCChHHHHHHHHHhcCCCceEEEEEEccCCcCHHHHHHHHHHHHHHcCCCCCCEEeCCCCCCCCCCCCcCCcc
Confidence 689999999999999999999999999999999999999999999999999999999999999999999985 2456778
Q ss_pred ccCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHcCCCceEEEEecchhHHHHHHhhCcchHhccceEEEecCCCCCCCCC
Q 019923 99 AHGSDGMGNISLTPPKAKKCDKNASEFLVDKVSEYPGEVSILALGPLTNLALAIKRDSSFASKVKNIVVLGGAFFALGNV 178 (334)
Q Consensus 99 ~hg~dGlg~~~~~~~~~~~~~~~a~~~i~~~~~~~p~~vtila~GpLTNlA~al~~~P~~~~~i~~iviMGG~~~~~GN~ 178 (334)
+||.||||+..+|.|...+.+++|+++|+++++++|++||||++|||||||+||+++|++.++||+||+|||++..+||+
T Consensus 81 ~hG~dGlg~~~~p~~~~~~~~~~A~~~i~~~~~~~~~~itiva~GPLTNlA~al~~~P~~~~~ik~iviMGG~~~~~GN~ 160 (316)
T PLN02717 81 VHGSDGLGNTNLPPPKGKKIEKSAAEFLVEKVSEYPGEVTVVALGPLTNLALAIKLDPSFAKKVGQIVVLGGAFFVNGNV 160 (316)
T ss_pred CCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHhCCCCEEEEECCcHHHHHHHHHHChHHHhhcCEEEEeCCCcCCCCCC
Confidence 99999999998888777777889999999999999999999999999999999999999999999999999999889999
Q ss_pred CccccccccCCHHHHHHHHHcCCcEEEEeccccceeecCHHHHHHHHhcCCcHHHHHHHHHHHHHHhccccCCCcccccc
Q 019923 179 NPAAEANIYGDPEAADVVFTSGANIAVVGINITTQVKLTDADFLELRQSKGRYVQLLGDMCKFYRDWHVKSDGVHGIFLH 258 (334)
Q Consensus 179 ~~~aEfN~~~DPeAA~~Vl~s~~~i~~v~ldvt~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~ 258 (334)
+|.||||||+|||||++||+|++|++|+|||+|+++.+++++++++.+.+++.++|+.+++++|++++.+.++..++++|
T Consensus 161 tp~aEfN~~~DPeAA~iVl~s~~~i~~v~ldvt~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (316)
T PLN02717 161 NPAAEANIFGDPEAADIVFTSGADITVVGINVTTQVVLTDADLEELRDSKGKYAQFLCDICKFYRDWHRKSYGIDGIYLH 240 (316)
T ss_pred CchhhhhhhcCHHHHHHHHhCCCCeEEEcccccCceecCHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhhcCCCcccCC
Confidence 99999999999999999999999999999999999999999999998888899999999999999988777777899999
Q ss_pred hHHHHHHHhcCCceeeEEeeEEEEecCCcceeEEEecCCcccccCCCCCCCCCcEEEeecCHHHHHHHHHHHHhc
Q 019923 259 DPVSFVALVRPDLFTFKKGVVRVETQGICMGHTLMDQGLKRWNVSNPWTGYSPVSVAWTVNVDKVLNYIKRLLMK 333 (334)
Q Consensus 259 D~la~a~~~~p~l~~~~~~~v~V~~~g~~~G~tv~d~~~~~~~~~~~~~~~~~v~v~~~vD~~~f~~~l~~~l~~ 333 (334)
|++|++++++|++|++++.+++|+++|.+||+|++|.+...+.....+.+.+|++|+.++|.++|+++|+++|.+
T Consensus 241 D~la~a~~~~P~~~~~~~~~v~Ve~~g~trG~tv~d~~~~~~~~~~~~~~~~n~~v~~~vD~~~f~~~~~~~l~~ 315 (316)
T PLN02717 241 DPTALLAAVRPSLFTYKEGVVRVETEGICRGLTLFDNGLKRWNGENAWTGRPPVKVAVTVDAPAVVELVKERLMA 315 (316)
T ss_pred cHHHhHHhcCccceEEEEecEEEEeCCCCCceEeeeccccccccccccCCCCCCEEeeecCHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999742222111123446799999999999999999999865
No 3
>PRK09955 rihB ribonucleoside hydrolase 2; Provisional
Probab=100.00 E-value=1.1e-81 Score=594.30 Aligned_cols=305 Identities=29% Similarity=0.523 Sum_probs=284.6
Q ss_pred CceEEEecCCCchHHHHHHHHHcCCCCeEEEEEEecCCCChHHHHHHHHHHHHHhCCCCCCeeeCCCCCCCCCCCccccc
Q 019923 19 PAKLIIDTDPGIDDSMTILMAFQTPELEILGLTTIFGNVTTEDATRNALTLCEMAGCPGVPVAEGSPEPLKGGKPRVAEF 98 (334)
Q Consensus 19 ~~~viiDtD~G~DD~~AL~~~l~~p~i~v~gIt~v~Gn~~~~~~~~na~~ll~~~g~~~IPV~~Ga~~pl~~~~~~~~~~ 98 (334)
++|||||||+|+||++||+|||.+|+++|+|||||+||++.+++++|++++|+.+|+ +||||+|+..||.++. ..+.+
T Consensus 3 ~~kvIiDtD~G~DDa~Al~~al~~p~~ev~gIttv~GN~~~~~~~~Nal~~l~~~g~-~IPV~~Ga~~PL~~~~-~~~~~ 80 (313)
T PRK09955 3 KRKIILDCDPGHDDAIAMMMAAKHPAIDLLGITIVAGNQTLDKTLINGLNVCQKLEI-NVPVYAGMPQPIMRQQ-IVADN 80 (313)
T ss_pred CceEEEECCCChHHHHHHHHHhcCCCcEEEEEEecCCCcCHHHHHHHHHHHHHHhCC-CCCEEeCCCCCCCCCC-CCccc
Confidence 579999999999999999999999999999999999999999999999999999997 8999999999999864 45678
Q ss_pred ccCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHcCCCceEEEEecchhHHHHHHhhCcchHhccceEEEecCCCCCCCCC
Q 019923 99 AHGSDGMGNISLTPPKAKKCDKNASEFLVDKVSEYPGEVSILALGPLTNLALAIKRDSSFASKVKNIVVLGGAFFALGNV 178 (334)
Q Consensus 99 ~hg~dGlg~~~~~~~~~~~~~~~a~~~i~~~~~~~p~~vtila~GpLTNlA~al~~~P~~~~~i~~iviMGG~~~~~GN~ 178 (334)
+||.||||+..+|.+...+.+.+|+++|+++++++|++||||++|||||||+|++++|++.++||+||+|||++. .||+
T Consensus 81 ~HG~~Glg~~~~~~~~~~~~~~~A~~~i~~~~~~~p~eitiva~GPLTNlA~al~~~P~~~~~i~~iviMGG~~~-~GN~ 159 (313)
T PRK09955 81 IHGETGLDGPVFEPLTRQAESTHAVKYIIDTLMASDGDITLVPVGPLSNIAVAMRMQPAILPKIREIVLMGGAYG-TGNF 159 (313)
T ss_pred cCCCCCCCCCCCCCcccccCCCcHHHHHHHHHHhCCCCEEEEEcCcHHHHHHHHHHChHHHHhCCEEEEeCCCCC-CCCC
Confidence 999999999988877777778899999999999999999999999999999999999999999999999999984 7999
Q ss_pred CccccccccCCHHHHHHHHHcCCcEEEEeccccceeecCHHHHHHHHhcCCcHHHHHHHHHHHHHHhccccCCCcccccc
Q 019923 179 NPAAEANIYGDPEAADVVFTSGANIAVVGINITTQVKLTDADFLELRQSKGRYVQLLGDMCKFYRDWHVKSDGVHGIFLH 258 (334)
Q Consensus 179 ~~~aEfN~~~DPeAA~~Vl~s~~~i~~v~ldvt~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~ 258 (334)
+|.+|||||+|||||++||+|++|++|+|||+|+++.+++++++++.+.+++.++|+.+++++|.+++.+.++..++++|
T Consensus 160 tp~aEfN~~~DPeAA~iV~~s~~~i~~v~lDvT~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~lh 239 (313)
T PRK09955 160 TPSAEFNIFADPEAARVVFTSGVPLVMMGLDLTNQTVCTPDVIARMERAGGPAGELFSDIMNFTLKTQFENYGLAGGPVH 239 (313)
T ss_pred CCCeeeccccCHHHHHHHHhCCCCEEEeccccccceecCHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhhcCCCCCccC
Confidence 99999999999999999999999999999999999999999999999888999999999999999888776777899999
Q ss_pred hHHHHHHHhcCCceeeEEeeEEEEecC-CcceeEEEecCCcccccCCCCCCCCCcEEEeecCHHHHHHHHHHHHhc
Q 019923 259 DPVSFVALVRPDLFTFKKGVVRVETQG-ICMGHTLMDQGLKRWNVSNPWTGYSPVSVAWTVNVDKVLNYIKRLLMK 333 (334)
Q Consensus 259 D~la~a~~~~p~l~~~~~~~v~V~~~g-~~~G~tv~d~~~~~~~~~~~~~~~~~v~v~~~vD~~~f~~~l~~~l~~ 333 (334)
|++|++++++|++|++++.+++||++| .+||+|++|.... +.+.+|++|+.++|.++|+++|+++|.+
T Consensus 240 D~la~a~~~~P~l~~~~~~~v~Ve~~g~~t~G~tv~d~~~~-------~~~~~n~~v~~~vD~~~f~~~~~~~l~~ 308 (313)
T PRK09955 240 DATCIGYLINPDGIKTQEMYVEVDVNSGPCYGRTVCDELGV-------LGKPANTKVGITIDTDWFWGLVEECVRG 308 (313)
T ss_pred hHHHHHHHcChhhEEEEEeeEEEEeCCCCCCceEEeccccc-------CCCCCCCEEeeecCHHHHHHHHHHHHHH
Confidence 999999999999999999999999985 8999999996421 1245799999999999999999999854
No 4
>cd02653 nuc_hydro_3 NH_3: A subgroup of nucleoside hydrolases. This group contains eukaryotic and bacterial proteins similar to nucleoside hydrolases. Nucleoside hydrolases cleave the N-glycosidic bond in nucleosides generating ribose and the respective base. These enzymes vary in their substrate specificity.
Probab=100.00 E-value=2.9e-78 Score=573.22 Aligned_cols=304 Identities=32% Similarity=0.528 Sum_probs=281.8
Q ss_pred eEEEecCCCchHHHHHHHHHcCCCCeEEEEEEecCCCChHHHHHHHHHHHHHhCCCCCCeeeCCCCCCCCCCCccccccc
Q 019923 21 KLIIDTDPGIDDSMTILMAFQTPELEILGLTTIFGNVTTEDATRNALTLCEMAGCPGVPVAEGSPEPLKGGKPRVAEFAH 100 (334)
Q Consensus 21 ~viiDtD~G~DD~~AL~~~l~~p~i~v~gIt~v~Gn~~~~~~~~na~~ll~~~g~~~IPV~~Ga~~pl~~~~~~~~~~~h 100 (334)
|||||||+|+||++||+|||++|+++|+|||+++||++.+++++|++++|+.+|+.+||||+|+..||.++. ..+.++|
T Consensus 1 kvIiDtD~GiDDa~AL~~al~~p~iel~gIt~v~GN~~~~~~~~Na~~ll~~~g~~dIPV~~Ga~~pl~~~~-~~~~~~h 79 (320)
T cd02653 1 KVIIDCDPGIDDALALLYLLASPDLDVVGITTTAGNVPVEQVAANALGVLELLGRTDIPVYLGADKPLAGPL-TTAQDTH 79 (320)
T ss_pred CEEEECCCChHHHHHHHHHhhCCCCeEEEEEEcCCccCHHHHHHHHHHHHHHcCCCCCcEEeCCCccCCCCC-CCccccc
Confidence 699999999999999999999999999999999999999999999999999999999999999999998864 4567899
Q ss_pred CCCCCCCCCCCCCCCCCCCccHHHHHHHHHHcCCCceEEEEecchhHHHHHHhhCcchHhccceEEEecCCCCCCCCCCc
Q 019923 101 GSDGMGNISLTPPKAKKCDKNASEFLVDKVSEYPGEVSILALGPLTNLALAIKRDSSFASKVKNIVVLGGAFFALGNVNP 180 (334)
Q Consensus 101 g~dGlg~~~~~~~~~~~~~~~a~~~i~~~~~~~p~~vtila~GpLTNlA~al~~~P~~~~~i~~iviMGG~~~~~GN~~~ 180 (334)
|.||||+..+|.+...+..++|+++|+++++++| +|+||++|||||||+|++++|++.++||+||+|||++..+||++|
T Consensus 80 G~dGlg~~~~p~~~~~~~~~~A~~~i~~~~~~~~-eitiva~GPLTNlA~al~~~P~~~~~ik~iviMGG~~~~~GN~tp 158 (320)
T cd02653 80 GPDGLGYAELPASTRTLSDESAAQAWVDLARAHP-DLIGLATGPLTNLALALREEPELPRLLRRLVIMGGAFNSRGNTSP 158 (320)
T ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHhCC-CeEEEECCchHHHHHHHHHChHHHHhcCEEEEECCCcCCCCCCCc
Confidence 9999999988877766778899999999999999 999999999999999999999999999999999999988999999
Q ss_pred cccccccCCHHHHHHHHHc----CCcEEEEeccccceeecCHHHHHHHHhcCCcHHHHHHHHHHHHHHhccccCCCcccc
Q 019923 181 AAEANIYGDPEAADVVFTS----GANIAVVGINITTQVKLTDADFLELRQSKGRYVQLLGDMCKFYRDWHVKSDGVHGIF 256 (334)
Q Consensus 181 ~aEfN~~~DPeAA~~Vl~s----~~~i~~v~ldvt~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 256 (334)
.||||||+|||||++||+| ++|++|+|||+|+++.+++++++++.+..++.++|+.+++++|.+++.+..+..+++
T Consensus 159 ~aEfN~~~DPeAA~iVl~s~~~~~~~i~~vplDvt~~~~~t~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (320)
T cd02653 159 VAEWNYWVDPEAAKEVLAAFGGHPVRPTICGLDVTRAVVLTPNLLERLARAKDSVGAFIEDALRFYFEFHWAYGHGYGAV 238 (320)
T ss_pred HhHHhhhcCHHHHHHHHhccccCCCCeEEeccccceeeecCHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhcCCCCCCC
Confidence 9999999999999999998 699999999999999999999999998888999999999999998876544455789
Q ss_pred cchHHHHHHHhcCCceeeEEeeEEEEecCCcceeEEEecCCcccccCCCCCCCCCcEEEeecCHHHHHHHHHHHHhc
Q 019923 257 LHDPVSFVALVRPDLFTFKKGVVRVETQGICMGHTLMDQGLKRWNVSNPWTGYSPVSVAWTVNVDKVLNYIKRLLMK 333 (334)
Q Consensus 257 l~D~la~a~~~~p~l~~~~~~~v~V~~~g~~~G~tv~d~~~~~~~~~~~~~~~~~v~v~~~vD~~~f~~~l~~~l~~ 333 (334)
+||++|++++++|++|++++.+++|+++|..+|+|++|.... +...+|++|+.++|.++|+++|+++|.+
T Consensus 239 lhD~lAva~~~~P~l~~~~~~~v~Ve~~g~~~G~tv~d~~~~-------~~~~~n~~v~~~vD~~~f~~~~~~~l~~ 308 (320)
T cd02653 239 IHDPLAAAVALNPNLARGRPAYVDVECTGVLTGQTVVDWAGF-------WGKGANAEILTKVDSQDFMALFIERVLA 308 (320)
T ss_pred CChHHHHHHhcChhheEEEEeeEEEEeCCCCCceEEEecccc-------CCCCCCcEEeeccCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999986679999996431 2345799999999999999999998864
No 5
>PRK10443 rihA ribonucleoside hydrolase 1; Provisional
Probab=100.00 E-value=5.9e-78 Score=569.33 Aligned_cols=306 Identities=33% Similarity=0.527 Sum_probs=283.7
Q ss_pred CceEEEecCCCchHHHHHHHHHcCCCCeEEEEEEecCCCChHHHHHHHHHHHHHhCCCCCCeeeCCCCCCCCCCCccccc
Q 019923 19 PAKLIIDTDPGIDDSMTILMAFQTPELEILGLTTIFGNVTTEDATRNALTLCEMAGCPGVPVAEGSPEPLKGGKPRVAEF 98 (334)
Q Consensus 19 ~~~viiDtD~G~DD~~AL~~~l~~p~i~v~gIt~v~Gn~~~~~~~~na~~ll~~~g~~~IPV~~Ga~~pl~~~~~~~~~~ 98 (334)
++|||||||+|+||++||+|||++|+++|+|||+++||++.+++++|++++|+.+|+.+||||+|+..||.++. ..+..
T Consensus 2 ~~~vIiDtD~g~DDa~AL~~al~~~~~~l~gIt~v~Gn~~~~~~~~na~~~l~~~g~~diPV~~Ga~~pl~~~~-~~~~~ 80 (311)
T PRK10443 2 ALPIILDCDPGHDDAIALVLALASPELDVKAVTTSAGNQTPEKTLRNALRMLTLLNRTDIPVAGGAVKPLMREL-IIADN 80 (311)
T ss_pred CCcEEEECCCChHHHHHHHHHhcCCCceEEEEEEeCCCCCHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCCCCC-cCccc
Confidence 47999999999999999999999999999999999999999999999999999999999999999999998753 45678
Q ss_pred ccCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHcCCCceEEEEecchhHHHHHHhhCcchHhccceEEEecCCCCCCCCC
Q 019923 99 AHGSDGMGNISLTPPKAKKCDKNASEFLVDKVSEYPGEVSILALGPLTNLALAIKRDSSFASKVKNIVVLGGAFFALGNV 178 (334)
Q Consensus 99 ~hg~dGlg~~~~~~~~~~~~~~~a~~~i~~~~~~~p~~vtila~GpLTNlA~al~~~P~~~~~i~~iviMGG~~~~~GN~ 178 (334)
+||++|+++..+|.|...+.+++|+++|+++++++|++|+||++|||||||+|++++|++.++||+||+|||++. .||+
T Consensus 81 ~hG~~Gl~~~~~p~~~~~~~~~~a~~~i~~~~~~~~~~itiva~GPLTNlA~al~~~P~~~~~i~~iviMGG~~~-~Gn~ 159 (311)
T PRK10443 81 VHGESGLDGPALPEPTFAPQNCTAVELMAKTLRESAEPVTLVSTGPQTNVALLLASHPELHSKIARIVIMGGAMG-LGNW 159 (311)
T ss_pred cCCCCCCCCCCCCCCccCCCCccHHHHHHHHHHhCCCCeEEEEccchHHHHHHHHHCchhhhhhCEEEEccCCCC-CCCC
Confidence 999999999888877777778899999999999999999999999999999999999999999999999999995 6999
Q ss_pred CccccccccCCHHHHHHHHHcCCcEEEEeccccceeecCHHHHHHHHhcCCcHHHHHHHHHHHHHHhccc-cCCCccccc
Q 019923 179 NPAAEANIYGDPEAADVVFTSGANIAVVGINITTQVKLTDADFLELRQSKGRYVQLLGDMCKFYRDWHVK-SDGVHGIFL 257 (334)
Q Consensus 179 ~~~aEfN~~~DPeAA~~Vl~s~~~i~~v~ldvt~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~l 257 (334)
+|.+|||||+|||||++||+|++|++++|||+|+++.++++++++|.+.+++.++|+.+++++|..++.+ .++..++++
T Consensus 160 ~~~aEfN~~~DPeAA~~Vl~s~~~i~~vpldvt~~~~~t~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~l 239 (311)
T PRK10443 160 TPAAEFNIYVDPEAAEIVFQSGIPIVMAGLDVTHKAQIMDEDIERIRAIGNPVATIVAELLDFFMEYHKDEKWGFVGAPL 239 (311)
T ss_pred CcchhhccCcCHHHHHHHHhCCCCEEEecccccceeecCHHHHHHHHhcCChHHHHHHHHHHHHHHHhHhhhCCCCCCCC
Confidence 9999999999999999999999999999999999999999999999988899999999999999888764 456778999
Q ss_pred chHHHHHHHhcCCceeeEEeeEEEEecC-CcceeEEEecCCcccccCCCCCCCCCcEEEeecCHHHHHHHHHHHHhc
Q 019923 258 HDPVSFVALVRPDLFTFKKGVVRVETQG-ICMGHTLMDQGLKRWNVSNPWTGYSPVSVAWTVNVDKVLNYIKRLLMK 333 (334)
Q Consensus 258 ~D~la~a~~~~p~l~~~~~~~v~V~~~g-~~~G~tv~d~~~~~~~~~~~~~~~~~v~v~~~vD~~~f~~~l~~~l~~ 333 (334)
||++|++++++|++|++++.+++||++| .+||+|++|.... ....+|++|++++|.++|+++|+++|.+
T Consensus 240 hD~lava~~~~P~~~~~~~~~v~Ve~~g~~trG~tv~~~~~~-------~~~~~n~~v~~~vd~~~f~~~l~~~l~~ 309 (311)
T PRK10443 240 HDPCTIAWLLKPELFTTVERWVGVETQGEYTQGMTVVDYYQL-------TGNKPNATVLVDVDRQGFVDLLAERLKF 309 (311)
T ss_pred CCHHHhHHhcCcceEEEEEeCEEEEcCCCCCCceEEEecccc-------CCCCCCCEEEeecCHHHHHHHHHHHHHh
Confidence 9999999999999999999999999997 6999999985421 1235799999999999999999999864
No 6
>cd02651 nuc_hydro_IU_UC_XIUA nuc_hydro_IU_UC_XIUA: inosine-uridine preferring, xanthosine-inosine-uridine-adenosine-preferring and, uridine-cytidine preferring nucleoside hydrolases. Nucleoside hydrolases cleave the N-glycosidic bond in nucleosides generating ribose and the respective base. These enzymes vary in their substrate specificity. This group contains proteins similar to nucleoside hydrolases which hydrolyze both pyrimidine and purine ribonucleosides: the inosine-uridine preferring nucleoside hydrolase from Crithidia fasciculata, the inosine-uridine-xanthosine preferring nucleoside hydrolase RihC from Escherichia coli and the xanthosine-inosine-uridine-adenosine-preferring nucleoside hydrolase RihC from Salmonella enterica serovar Typhimurium. This group also contains proteins similar to the pyrimidine-specific uridine-cytidine preferring nucleoside hydrolases URH1 from Saccharomyces cerevisiae, E. coli RihA and E. coli RihB. E. coli RihA is equally efficient with uridine a
Probab=100.00 E-value=4.3e-78 Score=569.29 Aligned_cols=301 Identities=37% Similarity=0.583 Sum_probs=278.7
Q ss_pred eEEEecCCCchHHHHHHHHHcCCCCeEEEEEEecCCCChHHHHHHHHHHHHHhCCCCCCeeeCCCCCCCCCCCccccccc
Q 019923 21 KLIIDTDPGIDDSMTILMAFQTPELEILGLTTIFGNVTTEDATRNALTLCEMAGCPGVPVAEGSPEPLKGGKPRVAEFAH 100 (334)
Q Consensus 21 ~viiDtD~G~DD~~AL~~~l~~p~i~v~gIt~v~Gn~~~~~~~~na~~ll~~~g~~~IPV~~Ga~~pl~~~~~~~~~~~h 100 (334)
|||||||+|+||++||+|||++|+++|+|||+++||++.+++++|++++|+.+|+.+||||+|+..||.++. ..+..+|
T Consensus 1 kvIiDtD~g~DDa~Al~~al~~~~~~l~gIt~v~Gn~~~~~~~~na~~ll~~~g~~diPV~~Ga~~pl~~~~-~~~~~~h 79 (302)
T cd02651 1 PIIIDCDPGHDDAVAILLALFHPELDLLGITTVAGNVPLEKTTRNALKLLTLLGRTDVPVAAGAARPLVRPL-ITASDIH 79 (302)
T ss_pred CeEEECCCCHHHHHHHHHHhcCCCceEEEEEeccCeecHHHHHHHHHHHHHHhCCCCCcEEcCCCcCcCCCC-CCCcCCC
Confidence 699999999999999999999999999999999999999999999999999999999999999999998864 3567799
Q ss_pred CCCCCCCCCCCCCCCCCCCccHHHHHHHHHHcCCCceEEEEecchhHHHHHHhhCcchHhccceEEEecCCCCCCCCCCc
Q 019923 101 GSDGMGNISLTPPKAKKCDKNASEFLVDKVSEYPGEVSILALGPLTNLALAIKRDSSFASKVKNIVVLGGAFFALGNVNP 180 (334)
Q Consensus 101 g~dGlg~~~~~~~~~~~~~~~a~~~i~~~~~~~p~~vtila~GpLTNlA~al~~~P~~~~~i~~iviMGG~~~~~GN~~~ 180 (334)
|.||||+..+|.+...+..++|+++|+++++++|++|+||++|||||||+|++++|++.++||+||+|||++ .+||++|
T Consensus 80 G~~Gl~~~~~p~~~~~~~~~~a~~~i~~~~~~~~~evtiva~GPLTNlA~al~~~P~~~~~ik~iviMGG~~-~~GN~tp 158 (302)
T cd02651 80 GESGLDGADLPPPPRRPEDIHAVDAIIDTLRASPEPITLVATGPLTNIALLLRKYPELAERIKEIVLMGGAL-GRGNITP 158 (302)
T ss_pred CCCCCCCCCCCCCCCCcCCCcHHHHHHHHHHhCCCCEEEEEcCchHHHHHHHHHChhhHhhcCEEEEecCCc-CCCCCCh
Confidence 999999998887766667789999999999999999999999999999999999999999999999999998 6899999
Q ss_pred cccccccCCHHHHHHHHHcCCcEEEEeccccceeecCHHHHHHHHhcCCcHHHHHHHHHHHHHHhccccCCCcccccchH
Q 019923 181 AAEANIYGDPEAADVVFTSGANIAVVGINITTQVKLTDADFLELRQSKGRYVQLLGDMCKFYRDWHVKSDGVHGIFLHDP 260 (334)
Q Consensus 181 ~aEfN~~~DPeAA~~Vl~s~~~i~~v~ldvt~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~D~ 260 (334)
.+|||||+|||||++||+|++|++++|||+|+++.++++++++|.+.+++.++|+.+++++|.+++.... ..++++||+
T Consensus 159 ~aEfN~~~DPeAA~~Vl~s~~~i~~v~ldvt~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~D~ 237 (302)
T cd02651 159 AAEFNIFVDPEAAKIVFNSGIPITMVPLDVTHKALATPEVIERIRALGNPVGKMLAELLDFFAETYGSAF-TEGPPLHDP 237 (302)
T ss_pred HHHhhcccCHHHHHHHHhCCCCeEEeccceeeeeccCHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhhc-cCCCCCCcH
Confidence 9999999999999999999999999999999999999999999998888999999999999887655433 468899999
Q ss_pred HHHHHHhcCCceeeEEeeEEEEecC-CcceeEEEecCCcccccCCCCCCCCCcEEEeecCHHHHHHHHHHHH
Q 019923 261 VSFVALVRPDLFTFKKGVVRVETQG-ICMGHTLMDQGLKRWNVSNPWTGYSPVSVAWTVNVDKVLNYIKRLL 331 (334)
Q Consensus 261 la~a~~~~p~l~~~~~~~v~V~~~g-~~~G~tv~d~~~~~~~~~~~~~~~~~v~v~~~vD~~~f~~~l~~~l 331 (334)
+|++++++|++|++++.+++|+++| .+||+|++|.... ....+|++|+.++|.++|+++|.++|
T Consensus 238 la~~~~~~p~~~~~~~~~v~Ve~~g~~~rG~tv~d~~~~-------~~~~~~~~v~~~vd~~~f~~~l~~~l 302 (302)
T cd02651 238 CAVAYLLDPELFTTKRANVDVETEGELTRGRTVVDLRGV-------TGRPANAQVAVDVDVEKFWDLLLEAL 302 (302)
T ss_pred HHhHHhcCccceEEEEeeEEEEcCCCCCCceEEEecccc-------CCCCCCcEEeeecCHHHHHHHHHHhC
Confidence 9999999999999999999999998 8999999986431 12457899999999999999999874
No 7
>PRK10768 ribonucleoside hydrolase RihC; Provisional
Probab=100.00 E-value=1.1e-77 Score=566.21 Aligned_cols=300 Identities=37% Similarity=0.545 Sum_probs=277.1
Q ss_pred CceEEEecCCCchHHHHHHHHHcCCCCeEEEEEEecCCCChHHHHHHHHHHHHHhCCCCCCeeeCCCCCCCCCCCccccc
Q 019923 19 PAKLIIDTDPGIDDSMTILMAFQTPELEILGLTTIFGNVTTEDATRNALTLCEMAGCPGVPVAEGSPEPLKGGKPRVAEF 98 (334)
Q Consensus 19 ~~~viiDtD~G~DD~~AL~~~l~~p~i~v~gIt~v~Gn~~~~~~~~na~~ll~~~g~~~IPV~~Ga~~pl~~~~~~~~~~ 98 (334)
++|||||||+|+||++||+|||++|+++|+|||+|+||++.+++++|++++|+.+| .+||||+|+..||.++. ..+..
T Consensus 2 ~~kvIiDtD~g~DDa~Al~~al~~p~~~v~git~v~GN~~~~~~~~na~~~l~~~g-~dIPV~~Ga~~pl~~~~-~~~~~ 79 (304)
T PRK10768 2 RLPIILDTDPGIDDAVAIAAALFAPELDLKLITTVAGNVSVEKTTRNALKLLHFFN-SDVPVAQGAAKPLVRPL-RDAAS 79 (304)
T ss_pred CCCEEEECCCCHHHHHHHHHHhcCCCceEEEEEecCCcccHHHHHHHHHHHHHHhC-CCCeEEeCCccccCCCC-CCccc
Confidence 47999999999999999999999999999999999999999999999999999999 79999999999998764 45677
Q ss_pred ccCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHcCCCceEEEEecchhHHHHHHhhCcchHhccceEEEecCCCCCCCCC
Q 019923 99 AHGSDGMGNISLTPPKAKKCDKNASEFLVDKVSEYPGEVSILALGPLTNLALAIKRDSSFASKVKNIVVLGGAFFALGNV 178 (334)
Q Consensus 99 ~hg~dGlg~~~~~~~~~~~~~~~a~~~i~~~~~~~p~~vtila~GpLTNlA~al~~~P~~~~~i~~iviMGG~~~~~GN~ 178 (334)
+||++|||+..+|.+...+.+++|+++|+++++++|++|+||++|||||||+|++++|++.++||+||+|||++ .+||+
T Consensus 80 ~hG~~Gl~~~~~p~~~~~~~~~~A~~~i~~~~~~~~~~itila~GPLTNlA~al~~~P~i~~~i~~iviMGG~~-~~GN~ 158 (304)
T PRK10768 80 VHGESGMEGYDFPEHTRKPLSIPAVEAMRDALMNAPEPVTLVAIGPLTNIALLLSTYPEVKPYIKRIVLMGGSA-GRGNV 158 (304)
T ss_pred ccCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHhCCCCEEEEECCcHHHHHHHHHHChhhHhhcCEEEEecCCc-CcCCC
Confidence 99999999998888777777889999999999999999999999999999999999999999999999999998 47999
Q ss_pred CccccccccCCHHHHHHHHHcCCcEEEEeccccceeecCHHHHHHHHhcCCcHHHHHHHHHHHHHHhccccCCCcccccc
Q 019923 179 NPAAEANIYGDPEAADVVFTSGANIAVVGINITTQVKLTDADFLELRQSKGRYVQLLGDMCKFYRDWHVKSDGVHGIFLH 258 (334)
Q Consensus 179 ~~~aEfN~~~DPeAA~~Vl~s~~~i~~v~ldvt~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~ 258 (334)
+|.+|||||+|||||++||+|++|++++|||+|+++.+++++++++.+. ++.++|+.+++++|..++.+ .++++|
T Consensus 159 t~~aEfN~~~DPeAA~iVl~s~~~i~~vpldvt~~~~~t~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~----~g~~~h 233 (304)
T PRK10768 159 TPNAEFNIAVDPEAAAIVFRSGIPIVMCGLDVTNQALLTPDYLATLPEL-NRTGKMLHALFSHYRSGSMQ----TGLRMH 233 (304)
T ss_pred CccchhccCCCHHHHHHHHhCCCCeEEeccccceeeecCHHHHHHHHhc-ChHHHHHHHHHHHHHhhccc----CCCCcC
Confidence 9999999999999999999999999999999999999999999999765 78899999999998876542 478999
Q ss_pred hHHHHHHHhcCCceeeEEeeEEEEecC-CcceeEEEecCCcccccCCCCCCCCCcEEEeecCHHHHHHHHHHHHhc
Q 019923 259 DPVSFVALVRPDLFTFKKGVVRVETQG-ICMGHTLMDQGLKRWNVSNPWTGYSPVSVAWTVNVDKVLNYIKRLLMK 333 (334)
Q Consensus 259 D~la~a~~~~p~l~~~~~~~v~V~~~g-~~~G~tv~d~~~~~~~~~~~~~~~~~v~v~~~vD~~~f~~~l~~~l~~ 333 (334)
|++|++++++|++|+.++.+++||++| .+||+|++|.... +...+|++|+.++|.++|+++|+++|.+
T Consensus 234 D~la~a~~~~P~~~~~~~~~v~Ve~~g~~trG~tv~d~~~~-------~~~~~~~~v~~~vd~~~f~~~~~~~l~~ 302 (304)
T PRK10768 234 DVCAIAYLLRPELFTLKPCFVDVETQGEFTAGATVVDIDGR-------LGKPANAQVALDIDVDGFQKWFAEVLAL 302 (304)
T ss_pred cHHHhhheeCcccEEEEEecEEEEeCCCCCCceEEEecccc-------CCCCCCcEEEeecCHHHHHHHHHHHHHh
Confidence 999999999999999999999999998 5999999996431 1245799999999999999999999864
No 8
>cd02650 nuc_hydro_CaPnhB NH_hydro_CaPnhB: A subgroup of nucleoside hydrolases similar to Corynebacterium ammoniagenes Purine/pyrimidine nucleoside hydrolase (pnhB). Nucleoside hydrolases cleave the N-glycosidic bond in nucleosides generating ribose and the respective base. These enzymes vary in their substrate specificity.
Probab=100.00 E-value=3.5e-77 Score=563.55 Aligned_cols=303 Identities=50% Similarity=0.848 Sum_probs=277.8
Q ss_pred eEEEecCCCchHHHHHHHHHcCCCCeEEEEEEecCCCChHHHHHHHHHHHHHhCCCCCCeeeCCCCCCCCCCCccccccc
Q 019923 21 KLIIDTDPGIDDSMTILMAFQTPELEILGLTTIFGNVTTEDATRNALTLCEMAGCPGVPVAEGSPEPLKGGKPRVAEFAH 100 (334)
Q Consensus 21 ~viiDtD~G~DD~~AL~~~l~~p~i~v~gIt~v~Gn~~~~~~~~na~~ll~~~g~~~IPV~~Ga~~pl~~~~~~~~~~~h 100 (334)
|||||||+|+||++||++||.+|+++|+||||++||++.+++++|++++|+.+|+.+||||+|+.+||.++....+.++|
T Consensus 1 kvIiDtD~g~DD~~AL~~al~~p~~~v~gIt~~~Gn~~~~~~~~na~~~l~~~g~~diPV~~G~~~pl~~~~~~~~~~~h 80 (304)
T cd02650 1 KLILDTDPGIDDAMALAYALAHPDVDLIGVTTVYGNVTIETATRNALALLELFGRPDVPVAEGAAKPLTRPPFRIATFVH 80 (304)
T ss_pred CEEEECCCCHHHHHHHHHHhcCCCCEEEEEEEccCCcCHHHHHHHHHHHHHHhCCCCCCEEcCCCCCCCCCCcCCcCCCC
Confidence 69999999999999999999999999999999999999999999999999999999999999999999886544678899
Q ss_pred CCCCCCCCCCCCCCCCCCCccHHHHHHHHHHcCCCceEEEEecchhHHHHHHhhCcchHhccceEEEecCCCCCCCCCCc
Q 019923 101 GSDGMGNISLTPPKAKKCDKNASEFLVDKVSEYPGEVSILALGPLTNLALAIKRDSSFASKVKNIVVLGGAFFALGNVNP 180 (334)
Q Consensus 101 g~dGlg~~~~~~~~~~~~~~~a~~~i~~~~~~~p~~vtila~GpLTNlA~al~~~P~~~~~i~~iviMGG~~~~~GN~~~ 180 (334)
|.||||+..+|.+...+.+++|+++|+++++++|++||||++|||||||+|++++|++.++||+||+|||++...||++|
T Consensus 81 g~dGlg~~~~p~~~~~~~~~~A~~~l~~~~~~~~~~vtivaiGPLTNlA~al~~~P~i~~~ik~iviMGG~~~~~GN~~p 160 (304)
T cd02650 81 GDNGLGDVELPAPPRQPEDESAADFLIELANEYPGELTLVAVGPLTNLALALARDPDFAKLVKQVVVMGGAFTVPGNVTP 160 (304)
T ss_pred CCCCCCCCCCCCCCCCcCccCHHHHHHHHHHhCCCCeEEEECCcHHHHHHHHHHCcHHHhhcCEEEEeCccccCCCCCCc
Confidence 99999999988777667788999999999999999999999999999999999999999999999999999988899999
Q ss_pred cccccccCCHHHHHHHHHcCCcEEEEeccccceeecCHHHHHHHHhcCCcHHHHHHHHHHHHHHhccccCCCcccccchH
Q 019923 181 AAEANIYGDPEAADVVFTSGANIAVVGINITTQVKLTDADFLELRQSKGRYVQLLGDMCKFYRDWHVKSDGVHGIFLHDP 260 (334)
Q Consensus 181 ~aEfN~~~DPeAA~~Vl~s~~~i~~v~ldvt~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~D~ 260 (334)
.+|||||+||+||++||+|++|++++|||+|+++.+++++++++.+.+++.++|+.+++++|.+++.+.++..++++||+
T Consensus 161 ~aEfN~~~DP~AA~iVl~s~~~i~~vpldvt~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~D~ 240 (304)
T cd02650 161 AAEANIHGDPEAADIVFTAGADLTMVGLDVTTQTLLTREDLDELRDSGGKAGQFLADMLDYYIDFYQESPGLRGCALHDP 240 (304)
T ss_pred hHHhhcccCHHHHHHHHhCCCCeEEeCCceeeeEecCHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhccCCCcccCCcH
Confidence 99999999999999999999999999999999999999999999988889999999999999988776666678999999
Q ss_pred HHHHHHhcCCceeeEEeeEEEEecCCcceeEEEecCCcccccCCCCCCCCCcEEEeecCH-HHHHHHHH
Q 019923 261 VSFVALVRPDLFTFKKGVVRVETQGICMGHTLMDQGLKRWNVSNPWTGYSPVSVAWTVNV-DKVLNYIK 328 (334)
Q Consensus 261 la~a~~~~p~l~~~~~~~v~V~~~g~~~G~tv~d~~~~~~~~~~~~~~~~~v~v~~~vD~-~~f~~~l~ 328 (334)
+|++++++|++|++++.+++|+++|.+||+|++|..+..| |...+|.++...+|. ++|+++|+
T Consensus 241 la~~~~~~P~~~~~~~~~v~Ve~~g~~~G~tv~d~~~~~~-----~~~~~~~~~~~~~d~~~~f~~~~~ 304 (304)
T cd02650 241 LAVAAAVDPSLFTTREGVVRVETEGPTRGRTIGDRDGRRF-----WDSSPNATVAVDVDVDERFLKRLM 304 (304)
T ss_pred HHHHhhcCccceEEEEeeEEEEeCCCCCceEEEecccccc-----ccCCCCceEEEEEChhHHHHHHhC
Confidence 9999999999999999999999999999999999754321 223456555555555 99999873
No 9
>cd02649 nuc_hydro_CeIAG nuc_hydro_CeIAG: Nucleoside hydrolases similar to the inosine-adenosine-guanosine-preferring nucleoside hydrolase from Caenorhabditis elegans. Nucleoside hydrolases cleave the N-glycosidic bond in nucleosides generating ribose and the respective base. These enzymes vary in their substrate specificity. This group contains eukaryotic, bacterial and archeal proteins similar to the purine-preferring nucleoside hydrolase (IAG-NH) from C. elegans and the salivary purine nucleosidase from Aedes aegypti. C. elegans IAG-NH exhibits a high affinity for the substrate analogue p-nitrophenylriboside (p-NPR).
Probab=100.00 E-value=6.4e-77 Score=560.53 Aligned_cols=299 Identities=32% Similarity=0.480 Sum_probs=275.4
Q ss_pred ceEEEecCCCchHHHHHHHHHcCCCCeEEEEEEecCCCChHHHHHHHHHHHHHhCCCCCCeeeCCCCCCCCCCCcccccc
Q 019923 20 AKLIIDTDPGIDDSMTILMAFQTPELEILGLTTIFGNVTTEDATRNALTLCEMAGCPGVPVAEGSPEPLKGGKPRVAEFA 99 (334)
Q Consensus 20 ~~viiDtD~G~DD~~AL~~~l~~p~i~v~gIt~v~Gn~~~~~~~~na~~ll~~~g~~~IPV~~Ga~~pl~~~~~~~~~~~ 99 (334)
+|||||||+|+||++||++||.+|+++|+|||+++||++.+++++|++++|+.+|+.+||||+|+.+||.++. ..+..+
T Consensus 1 ~kviiDtD~g~DD~~Al~~al~~~~~~l~gIt~v~GN~~~~~~~~na~~~l~~~g~~diPV~~Ga~~pl~~~~-~~~~~~ 79 (306)
T cd02649 1 RKLIIDTDCGGDDAWALLMALASPNVEVLAITCVHGNTNVEQVVKNALRVLEACGRRDIPVYRGASKPLLGPG-PTAAYF 79 (306)
T ss_pred CeEEEECCCChHHHHHHHHHhcCCCceEEEEEEccCCcCHHHHHHHHHHHHHHhCCCCCCEecCCCccCCCCC-CCcccc
Confidence 4899999999999999999999999999999999999999999999999999999999999999999999865 356689
Q ss_pred cCCCCCCCCCCCCCC--CCCCCccHHHHHHHHHHcCCCceEEEEecchhHHHHHHhhCcchHhccceEEEecCCCCCCCC
Q 019923 100 HGSDGMGNISLTPPK--AKKCDKNASEFLVDKVSEYPGEVSILALGPLTNLALAIKRDSSFASKVKNIVVLGGAFFALGN 177 (334)
Q Consensus 100 hg~dGlg~~~~~~~~--~~~~~~~a~~~i~~~~~~~p~~vtila~GpLTNlA~al~~~P~~~~~i~~iviMGG~~~~~GN 177 (334)
||.||||+..+|.+. ..+.+.+|+++|+++++++|++||||++|||||||+||+++|++.++||+||+|||++...||
T Consensus 80 hG~~Glg~~~~p~~~~~~~~~~~~a~~~i~~~~~~~~~~vtiva~GPLTNlA~al~~~p~~~~~i~~iviMGG~~~~~GN 159 (306)
T cd02649 80 HGKDGFGDVGFPEPKDELELQKEHAVDAIIRLVREYPGEITLVALGPLTNLALAYRLDPSLPQKIKRLYIMGGNREGVGN 159 (306)
T ss_pred CCCCCCCCCCCCCCcccCCcCCCCHHHHHHHHHHhCCCCeEEEecccHHHHHHHHHHChHHHHhcCeEEEeCCCccCCCC
Confidence 999999999888766 556678999999999999999999999999999999999999999999999999999988899
Q ss_pred CCccccccccCCHHHHHHHHHc-CCcEEEEeccccc-eeecCHHHHHHHHhcCCcHHHHHHHHHHHHHHhccccCCCccc
Q 019923 178 VNPAAEANIYGDPEAADVVFTS-GANIAVVGINITT-QVKLTDADFLELRQSKGRYVQLLGDMCKFYRDWHVKSDGVHGI 255 (334)
Q Consensus 178 ~~~~aEfN~~~DPeAA~~Vl~s-~~~i~~v~ldvt~-~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 255 (334)
++|.||||||+|||||++||+| ++|++|+|||+|+ ++.+++++++++.+. ++.++|+.+++++|.+++.+..+..++
T Consensus 160 ~~~~aEfN~~~DPeAA~~Vl~s~~~~i~lv~ldvt~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~ 238 (306)
T cd02649 160 TTPAAEFNFHVDPEAAHIVLNSFGCPITIVPWETTLLAFPLDWEFEDKWANR-LEKALFAESLNRREYAFASEGLGGDGW 238 (306)
T ss_pred CCcccccccccCHHHHHHHHhcCCCCEEEEccccccceeecCHHHHHHHHhc-ChHHHHHHHHHHHHHHHHHhhcCCCCC
Confidence 9999999999999999999999 9999999999999 999999999999865 578999999999998887766667789
Q ss_pred ccchHHHHHHHhcCCceeeEEe-eEEEEecC-CcceeEEEecCCcccccCCCCCCCCCcEEEeecCHHHHHHHH
Q 019923 256 FLHDPVSFVALVRPDLFTFKKG-VVRVETQG-ICMGHTLMDQGLKRWNVSNPWTGYSPVSVAWTVNVDKVLNYI 327 (334)
Q Consensus 256 ~l~D~la~a~~~~p~l~~~~~~-~v~V~~~g-~~~G~tv~d~~~~~~~~~~~~~~~~~v~v~~~vD~~~f~~~l 327 (334)
++||++|++++++|++|++++. +++|+++| .+||+|++|.... +...+|++|+.++|.++|+++|
T Consensus 239 ~~hD~lava~~~~P~l~~~~~~~~v~Ve~~g~~~~G~tv~d~~~~-------~~~~~n~~v~~~vD~~~f~~~~ 305 (306)
T cd02649 239 VPCDALAVAAALDPSIITRRLTYAVDVELHGELTRGQMVVDWLGT-------LKKKPNARVITKIDREKFKELL 305 (306)
T ss_pred CCCcHHHHHHHcCHhHEEEEEeeeEEEEECCCCCcceEEEecccc-------CCCCCCCEEehhcCHHHHHHHh
Confidence 9999999999999999998764 59999997 6999999996431 2345799999999999999987
No 10
>PTZ00313 inosine-adenosine-guanosine-nucleoside hydrolase; Provisional
Probab=100.00 E-value=1.3e-74 Score=549.49 Aligned_cols=302 Identities=23% Similarity=0.293 Sum_probs=263.0
Q ss_pred CceEEEecCCCchHHHHHHHHHcCCC-CeEEEEEEecCCCChHHHHHHHHHHHHHhCCC-CCCeeeCCCCCCCCCCCccc
Q 019923 19 PAKLIIDTDPGIDDSMTILMAFQTPE-LEILGLTTIFGNVTTEDATRNALTLCEMAGCP-GVPVAEGSPEPLKGGKPRVA 96 (334)
Q Consensus 19 ~~~viiDtD~G~DD~~AL~~~l~~p~-i~v~gIt~v~Gn~~~~~~~~na~~ll~~~g~~-~IPV~~Ga~~pl~~~~~~~~ 96 (334)
++|||||||+|+||++||+|||.+|+ ++|+|||||+||++++++++|++++|+++|+. +|||+.|+..|+.+.....+
T Consensus 2 ~~~vIiD~D~GiDDa~Al~~al~~~~~~~v~gIT~v~GNv~~~~~~~Na~~vl~~~g~~~dvPv~~ga~~~~~~~~~~~~ 81 (326)
T PTZ00313 2 PKPVILDHDGNHDDLVALALLLGNPEKVKVIGCICTDADCFVDDAFNVTGKLMCMMHAREATPLFPIGKSSFKGVNPFPS 81 (326)
T ss_pred CCCEEEeCCCCHHHHHHHHHHhcCCcCcEEEEEEEecCCccHHHHHHHHHHHHHHhCCCCCCCeeeecCCcccCCCCCcc
Confidence 46999999999999999999999997 99999999999999999999999999999997 89999999999977422233
Q ss_pred ccc---cCCCCCCCCCCCCCCC-----CCCC--ccHHHHHHHHHHcCCCceEEEEecchhHHHHHHhhCc-chHhccceE
Q 019923 97 EFA---HGSDGMGNISLTPPKA-----KKCD--KNASEFLVDKVSEYPGEVSILALGPLTNLALAIKRDS-SFASKVKNI 165 (334)
Q Consensus 97 ~~~---hg~dGlg~~~~~~~~~-----~~~~--~~a~~~i~~~~~~~p~~vtila~GpLTNlA~al~~~P-~~~~~i~~i 165 (334)
.+. ||.+|||+..+|.+.. .+.. .+|+++|++++++||++||||++|||||||+||+++| ++.++||+|
T Consensus 82 ~~~~g~~G~~glg~~~~p~~~~~~~~~~~~~~~~~a~~~i~~~i~~~p~eItiva~GPLTNlAlal~~~pp~~~~~ik~i 161 (326)
T PTZ00313 82 EWRWSAKNMDDLPCLNIPEHVAIWEKLKPENEALVGEELLADLVMSSPEKVTICVTGPLSNVAWCIEKYGEEFTKKVEEC 161 (326)
T ss_pred hheecccCCCCCCCCCCCCccccccccCCccccchHHHHHHHHHHhCCCCEEEEECCcHHHHHHHHHhCCHHHHHhcCEE
Confidence 333 7778888887776542 2332 3599999999999999999999999999999999996 999999999
Q ss_pred EEecCCCCCCCCC-----CccccccccCCHHHHHHHHHcC-CcEEEEeccccceeecCHHHHHHHHhcCC-cHHHHHHHH
Q 019923 166 VVLGGAFFALGNV-----NPAAEANIYGDPEAADVVFTSG-ANIAVVGINITTQVKLTDADFLELRQSKG-RYVQLLGDM 238 (334)
Q Consensus 166 viMGG~~~~~GN~-----~~~aEfN~~~DPeAA~~Vl~s~-~~i~~v~ldvt~~~~~~~~~~~~l~~~~~-~~~~~l~~~ 238 (334)
|+|||++..+||+ +|.||||||+|||||++||+|+ +|++|+|||+|+++.++++++++|.+.++ +.++|+.++
T Consensus 162 viMGG~~~~~GN~~~~~~tp~AEfN~~~DPeAA~iV~~s~~~~i~~v~LdvT~~~~~t~~~~~~l~~~~~~~~~~~~~~~ 241 (326)
T PTZ00313 162 VIMGGAVDVGGNVFLPGTDGSAEWNIYWDPPAAKTVLMCPHIRKVLFSLDSTNSVPVTSEVVKKFGAQNKYLLSQFVGST 241 (326)
T ss_pred EEeCCcccCCCCccCCCCCcccchhhhcCHHHHHHHHhCCCCCEEEeccccccceeCCHHHHHHHHhcCcchHHHHHHHH
Confidence 9999999888998 7999999999999999999996 99999999999999999999999987655 578888887
Q ss_pred HHHHHHhccccCCCcccccchHHHHHHHhcCCceeeEEeeEEEEecC-CcceeEEEecCCcccccCCCCCCCCCcEEEee
Q 019923 239 CKFYRDWHVKSDGVHGIFLHDPVSFVALVRPDLFTFKKGVVRVETQG-ICMGHTLMDQGLKRWNVSNPWTGYSPVSVAWT 317 (334)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~l~D~la~a~~~~p~l~~~~~~~v~V~~~g-~~~G~tv~d~~~~~~~~~~~~~~~~~v~v~~~ 317 (334)
+..+..+ ....+..++++||++|++++++|++|++++.+++|+++| .+||+|+++.. +.++++|+.+
T Consensus 242 ~~~~~~~-~~~~~~~g~~~hD~lA~a~~~~Pel~~~~~~~v~Ve~~~~~t~G~tv~~~~-----------~~~~~~V~~~ 309 (326)
T PTZ00313 242 WAMCTHH-ELLRPGDGYYAWDVLTAAYVIERNLAELEPVPLEVVVEKAKNEGRTRRAAE-----------GAACTYVAKN 309 (326)
T ss_pred Hhhhhhh-hhhcCCCCCcCcHHHHHHHhcChheEEEEEEEEEEEeCCCCCCceEEeCCC-----------CCCceEEEec
Confidence 6543221 111123688999999999999999999999999999985 89999998742 2357999999
Q ss_pred cCHHHHHHHHHHHHh
Q 019923 318 VNVDKVLNYIKRLLM 332 (334)
Q Consensus 318 vD~~~f~~~l~~~l~ 332 (334)
+|.++|+++|++.|.
T Consensus 310 vd~~~f~~~~~~~l~ 324 (326)
T PTZ00313 310 TNAELFYDMVLDSAR 324 (326)
T ss_pred CCHHHHHHHHHHHHh
Confidence 999999999999875
No 11
>cd02654 nuc_hydro_CjNH nuc_hydro_CjNH. Nucleoside hydrolases similar to Campylobacter jejuni nucleoside hydrolase. This group contains eukaryotic and bacterial proteins similar to C. jejuni nucleoside hydrolase. Nucleoside hydrolases cleave the N-glycosidic bond in nucleosides generating ribose and the respective base. These enzymes vary in their substrate specificity. C. jejuni nucleoside hydrolase is inactive against natural nucleosides or against common nucleoside analogues.
Probab=100.00 E-value=9.4e-74 Score=542.25 Aligned_cols=298 Identities=29% Similarity=0.376 Sum_probs=263.9
Q ss_pred eEEEecCCC----chHHHHHHHHHcCCCCeEEEEEEecCCCChHHHHHHHHHHHHHhCCCCCCeeeCCCCCCCCCCCcc-
Q 019923 21 KLIIDTDPG----IDDSMTILMAFQTPELEILGLTTIFGNVTTEDATRNALTLCEMAGCPGVPVAEGSPEPLKGGKPRV- 95 (334)
Q Consensus 21 ~viiDtD~G----~DD~~AL~~~l~~p~i~v~gIt~v~Gn~~~~~~~~na~~ll~~~g~~~IPV~~Ga~~pl~~~~~~~- 95 (334)
|||||||+| +||++||+|||++|+++|+|||||+||++.+++++|++++|+.+|+.+||||+|+.+||.+.....
T Consensus 1 kvIiDtD~G~~~d~DDa~Al~lal~~p~~el~gIt~v~GN~~~~~~~~Na~~ll~~~g~~dIPV~~Ga~~pl~~~~~~~~ 80 (318)
T cd02654 1 KVILDNDIAMGRDTDDGLALALLLWSPEVELLGLSAVSGNCWLSAVTYNVLRMLELAGADAIPVYAGANTPLGRTNRAFH 80 (318)
T ss_pred CEEEEcCCCCCCCccHHHHHHHHhhCCCceEEEEEEecCCCCHHHHHHHHHHHHHHhCCCCCCEEECCCccccCCccccc
Confidence 699999999 999999999999999999999999999999999999999999999999999999999998863211
Q ss_pred -cccccCCCCCCCCCCCCCC--------CCCCCccHHHHHHHHHHcCCCceEEEEecchhHHHHHHhhCcchHhccceEE
Q 019923 96 -AEFAHGSDGMGNISLTPPK--------AKKCDKNASEFLVDKVSEYPGEVSILALGPLTNLALAIKRDSSFASKVKNIV 166 (334)
Q Consensus 96 -~~~~hg~dGlg~~~~~~~~--------~~~~~~~a~~~i~~~~~~~p~~vtila~GpLTNlA~al~~~P~~~~~i~~iv 166 (334)
.+..||.+|+++..+|.+. ..+..++|+++|+++++++|++||||++|||||||+|++++|++.++||+||
T Consensus 81 ~~~~~~G~~g~~~~~~p~~~~~~~~~~~~~~~~~~A~~~i~~~~~~~p~~itiva~GPLTNlA~al~~~P~~~~~i~~iv 160 (318)
T cd02654 81 AWESLYGAYLWQGAWSPEYSDMYTNASIIRNASIPAALFMIEMVRKHPHEVSIVAAGPLTNLALALRIDPDFAPLAKELV 160 (318)
T ss_pred cccccCCCcccCCCCCCCccccccccccCCCCCccHHHHHHHHHHhCCCceEEEECCcHHHHHHHHHHChhHHHhCCEEE
Confidence 1568999999888777654 3445689999999999999999999999999999999999999999999999
Q ss_pred EecCCCCCCC-CCC-c-cccccccCCHHHHHHHHHcCCcEEEEeccccceeecCHHHHHHHHhcCCcHHHHHHHHHHHHH
Q 019923 167 VLGGAFFALG-NVN-P-AAEANIYGDPEAADVVFTSGANIAVVGINITTQVKLTDADFLELRQSKGRYVQLLGDMCKFYR 243 (334)
Q Consensus 167 iMGG~~~~~G-N~~-~-~aEfN~~~DPeAA~~Vl~s~~~i~~v~ldvt~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~ 243 (334)
+|||++...| |++ + .||||||+|||||++||+|++|++|+|||+|+++.+++++++++ ++.++|+.+++++|.
T Consensus 161 iMGG~~~~~g~~~~~~~~aEfN~~~DPeAA~iVl~s~~~~~~v~ldvT~~~~~~~~~~~~~----~~~~~~~~~~~~~~~ 236 (318)
T cd02654 161 IMGGYLDDIGEFVNRHYASDFNLIMDPEAASIVLTAPWKSITIPGNVTNRTCLTPEQIKAD----DPLRDFIRETLDLPI 236 (318)
T ss_pred EeCCCccCCCCcCCCCCCcceeeccCHHHHHHHHhCCCCEEEeCcccccceeCCHHHHhcc----CHHHHHHHHHHHHHH
Confidence 9999986656 676 3 89999999999999999999999999999999999999998755 567899999999998
Q ss_pred HhccccCCC-cccccchHHHHHHHhcCCceeeEEe-eEEEEecCCcceeEEEecCCcccccCCCCC-CCCCcEEEeecCH
Q 019923 244 DWHVKSDGV-HGIFLHDPVSFVALVRPDLFTFKKG-VVRVETQGICMGHTLMDQGLKRWNVSNPWT-GYSPVSVAWTVNV 320 (334)
Q Consensus 244 ~~~~~~~~~-~~~~l~D~la~a~~~~p~l~~~~~~-~v~V~~~g~~~G~tv~d~~~~~~~~~~~~~-~~~~v~v~~~vD~ 320 (334)
+++.+.++. .++++||++|++++++|++|++++. +|+|++++.+||+|++|.....+ .. ..+|++|+.++|.
T Consensus 237 ~~~~~~~~~~~g~~~hD~lava~~~~P~l~~~~~~~~v~Ve~~~~~~G~tv~d~~~~~~-----~~~~~~n~~v~~~vD~ 311 (318)
T cd02654 237 DYAKEFVGTGDGLPMWDELASAVALDPELATSSETFYIDVQTDSDGGGQLIWPEDLLLA-----KGLRPYHVKVITAVDV 311 (318)
T ss_pred HHHHHhcCCCCCCCCchHHHHHHHcCHhHccceEeEEEEEEeCCCcCCeEEeecccCCC-----CCCCCCCCEEeecccH
Confidence 887655443 6899999999999999999998887 99999987799999999643210 11 2469999999999
Q ss_pred HHHHHHH
Q 019923 321 DKVLNYI 327 (334)
Q Consensus 321 ~~f~~~l 327 (334)
++|+++|
T Consensus 312 ~~f~~~~ 318 (318)
T cd02654 312 AAFLNLI 318 (318)
T ss_pred HHHHhhC
Confidence 9999875
No 12
>cd00455 nuc_hydro nuc_hydro: Nucleoside hydrolases. Nucleoside hydrolases cleave the N-glycosidic bond in nucleosides generating ribose and the respective base. These enzymes vary in their substrate specificity. This group contains eukaryotic, bacterial and archeal proteins similar to the inosine-uridine preferring nucleoside hydrolase from Crithidia fasciculata, the xanthosine-inosine-uridine-adenosine-preferring nucleoside hydrolase RihC from Salmonella enterica serovar Typhimurium, the purine-specific inosine-adenosine-guanosine-preferring nucleoside hydrolase from Trypanosoma vivax and, pyrimidine-specific uridine-cytidine preferring nucleoside hydrolases such as URH1 from Saccharomyces cerevisiae, RihA and RihB from Escherichia coli. Nucleoside hydrolases are of interest as a target for antiprotozoan drugs as, no nucleoside hydrolase activity or genes encoding these enzymes have been detected in humans and, parasitic protozoans lack de novo purine synthesis relying on nucleosid
Probab=100.00 E-value=1.1e-71 Score=523.79 Aligned_cols=295 Identities=39% Similarity=0.656 Sum_probs=267.0
Q ss_pred EEEecCCCchHHHHHHHHHcCCCCeEEEEEEecCCCChHHHHHHHHHHHHHhCCCCCCeeeCCCCCCCCCCCcccccccC
Q 019923 22 LIIDTDPGIDDSMTILMAFQTPELEILGLTTIFGNVTTEDATRNALTLCEMAGCPGVPVAEGSPEPLKGGKPRVAEFAHG 101 (334)
Q Consensus 22 viiDtD~G~DD~~AL~~~l~~p~i~v~gIt~v~Gn~~~~~~~~na~~ll~~~g~~~IPV~~Ga~~pl~~~~~~~~~~~hg 101 (334)
||||||+|+||++||++++++|+++|+|||+++||++.+++++|++++|+.+|+.+||||+|+..|+.++........||
T Consensus 1 vIiDtD~g~DDa~Al~~~l~~~~~~l~gIt~~~Gn~~~~~~~~n~~~~l~~~g~~~iPV~~G~~~pl~~~~~~~~~~~~g 80 (295)
T cd00455 1 VILDTDPGIDDAFALMYALLHPEIELVGIVATYGNVTLEQATQNAAYLLELLGRLDIPVYAGATRPLTGEIPAAYPEIHG 80 (295)
T ss_pred CEEeCCCCHHHHHHHHHHhcCCCceEEEEEeccCCccHHHHHHHHHHHHHHhCCCCCCEeCCCCCCCCCCCCCCCcccCC
Confidence 69999999999999999999999999999999999999999999999999999999999999999998764333445788
Q ss_pred CCCCCCCCCCCCCCCCCCccHHHHHHHHHHcCCCceEEEEecchhHHHHHHhhCcchHhccceEEEecCCCCCCCCCCcc
Q 019923 102 SDGMGNISLTPPKAKKCDKNASEFLVDKVSEYPGEVSILALGPLTNLALAIKRDSSFASKVKNIVVLGGAFFALGNVNPA 181 (334)
Q Consensus 102 ~dGlg~~~~~~~~~~~~~~~a~~~i~~~~~~~p~~vtila~GpLTNlA~al~~~P~~~~~i~~iviMGG~~~~~GN~~~~ 181 (334)
.+|.+. .+.+.....+++|+++|+++++++|++++|+++|||||||+|++++|++.++||+||+|||++..+||++|.
T Consensus 81 ~~g~~~--~~~~~~~~~~~~a~~~i~~~~~~~~~~v~ila~GplTNlA~al~~~p~~~~~i~~iviMGG~~~~~Gn~~~~ 158 (295)
T cd00455 81 EGGLGL--PIPPIIEADDPEAVQLLIDLIRKYPDEITIVALGPLTNLAMAFILDPDIKDRVKEIVIMGGAFLVPGNVTPV 158 (295)
T ss_pred CCCCCC--CCCCCCcCCCcCHHHHHHHHHHhcCCCeEEEECCchHHHHHHHHHChHHHHhCCEEEEcCCccCCCCCCCcc
Confidence 888332 233333445789999999999999999999999999999999999999999999999999999778999999
Q ss_pred ccccccCCHHHHHHHHHcCCcEEEEeccccceeecCHHHHHHHHhcCCcHHHHHHHHHHHHHHhccccCCCcccccchHH
Q 019923 182 AEANIYGDPEAADVVFTSGANIAVVGINITTQVKLTDADFLELRQSKGRYVQLLGDMCKFYRDWHVKSDGVHGIFLHDPV 261 (334)
Q Consensus 182 aEfN~~~DPeAA~~Vl~s~~~i~~v~ldvt~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~D~l 261 (334)
+|||||+|||||++||+|++|++|+|||+|+++.+++++++++.+..++.++|+.+++++|..++.+ ++..++++||++
T Consensus 159 aEfN~~~DP~AA~~Vl~s~~~i~~vpldvt~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~D~l 237 (295)
T cd00455 159 AEANFYGDPEAANIVFNSAKNLTIVPLDVTNQAVLTPPMVERIFEQGTSIGLLIKPMIDYYYKAYQK-PGIEGSPIHDPL 237 (295)
T ss_pred chhhcccCHHHHHHHHhCCCCeEEecccceeeEeCCHHHHHHHHHhCCcHHHHHHHHHHHHHHHHhc-CCCCcCCCChHH
Confidence 9999999999999999999999999999999999999999999888889999999999999887766 566789999999
Q ss_pred HHHHHhcCCceeeEEeeEEEEecCCcceeEEEecCCcccccCCCCCCCCCcEEEeecCHHHHHHHH
Q 019923 262 SFVALVRPDLFTFKKGVVRVETQGICMGHTLMDQGLKRWNVSNPWTGYSPVSVAWTVNVDKVLNYI 327 (334)
Q Consensus 262 a~a~~~~p~l~~~~~~~v~V~~~g~~~G~tv~d~~~~~~~~~~~~~~~~~v~v~~~vD~~~f~~~l 327 (334)
|++++++|++|+.++.+++|+++|.++|+|++|.... ...+|++|+.++|.++|+++|
T Consensus 238 Av~~~~~P~~~~~~~~~v~V~~~g~~~G~t~~d~~~~--------~~~~~~~v~~~~d~~~f~~~~ 295 (295)
T cd00455 238 AVAYLLNPSMFDYSKVPVDVDTDGLTRGQTIADFREN--------PGNGVTRVAVNLDYPDFIELI 295 (295)
T ss_pred HHHHhcCcccEEEEEEeEEEEeCCCCCceEEEecccC--------CCCCCcEEEEecCHHHHHhhC
Confidence 9999999999999999999999999999999996421 134699999999999999864
No 13
>PF01156 IU_nuc_hydro: Inosine-uridine preferring nucleoside hydrolase; InterPro: IPR001910 Inosine-uridine preferring nucleoside hydrolase (3.2.2.1 from EC) (IU-nucleoside hydrolase or IUNH) is an enzyme first identified in protozoan [] that catalyses the hydrolysis of all of the commonly occuring purine and pyrimidine nucleosides into ribose and the associated base, but has a preference for inosine and uridine as substrates. This enzyme is important for these parasitic organisms, which are deficient in de novo synthesis of purines, to salvage the host purine nucleosides. IUNH from Crithidia fasciculata has been sequenced and characterised, it is an homotetrameric enzyme of subunits of 34 Kd. An histidine has been shown to be important for the catalytic mechanism, it acts as a proton donor to activate the hypoxanthine leaving group. A highly conserved region located in the N-terminal extremity contains four conserved aspartates that have been shown [] to be located in the active site cavity. IUNH is evolutionary related to a number of uncharacterised proteins from various biological sources. This entry represents the structural domain of IUNH.; PDB: 1EZR_D 2MAS_B 1MAS_A 3MKM_C 3MKN_C 2C40_A 3T8J_A 2FF2_B 1KIE_A 2FF1_A ....
Probab=100.00 E-value=3.7e-73 Score=538.22 Aligned_cols=304 Identities=45% Similarity=0.734 Sum_probs=260.1
Q ss_pred CceEEEecCCCchHHHHHHHHHcCCCCeEEEEEEecCCCChHHHHHHHHHHHHHhC-CCCCCeeeCCCCCCCCCCCcccc
Q 019923 19 PAKLIIDTDPGIDDSMTILMAFQTPELEILGLTTIFGNVTTEDATRNALTLCEMAG-CPGVPVAEGSPEPLKGGKPRVAE 97 (334)
Q Consensus 19 ~~~viiDtD~G~DD~~AL~~~l~~p~i~v~gIt~v~Gn~~~~~~~~na~~ll~~~g-~~~IPV~~Ga~~pl~~~~~~~~~ 97 (334)
|+|||||||+|+||++||++||.+|+++|+|||+++||++.+++++|++++|+.+| +.+||||+|+..||.++. ....
T Consensus 1 ~~~viiDtD~g~DD~~Al~~~l~~~~i~i~gIt~~~Gn~~~~~~~~n~~~~l~~~g~~~~iPV~~G~~~pl~~~~-~~~~ 79 (312)
T PF01156_consen 1 MKKVIIDTDPGIDDALALALALASPEIEILGITTVFGNVSVEQAARNALRLLELAGGRDDIPVYKGADRPLVRPP-EYAP 79 (312)
T ss_dssp -EEEEEEE--SHHHHHHHHHHHHHTTEEEEEEEE-SSSS-HHHHHHHHHHHHHHTTTCSTS-EEEEESS-SSSSH-HHHH
T ss_pred CcEEEEECCCChhHHHHHHHHHhCCCcEEEEEEEecCCcchHHHHHHHHHHHHHhcCCCccceeecchhhhhccc-cchh
Confidence 68999999999999999999999999999999999999999999999999999996 778999999999998643 4567
Q ss_pred cccCCCCCCCCCCCCCCCC--CCCccHHHHHHHHHHcCCCceEEEEecchhHHHHHHhhCcchHhccceEEEecCCCCCC
Q 019923 98 FAHGSDGMGNISLTPPKAK--KCDKNASEFLVDKVSEYPGEVSILALGPLTNLALAIKRDSSFASKVKNIVVLGGAFFAL 175 (334)
Q Consensus 98 ~~hg~dGlg~~~~~~~~~~--~~~~~a~~~i~~~~~~~p~~vtila~GpLTNlA~al~~~P~~~~~i~~iviMGG~~~~~ 175 (334)
++||.+||++..+|.+... +.+++|+++|+++++++|++|+|||+|||||||+||+++|++.+||++||+|||++..+
T Consensus 80 ~~~g~~gl~~~~~~~~~~~~~~~~~~a~~~i~~~~~~~~~~vtiva~GplTNlA~al~~~P~~~~~i~~iviMGG~~~~~ 159 (312)
T PF01156_consen 80 EIHGEDGLGDASLPEPEDEPYPSDEDAVDFIIELLKAYPGEVTIVAIGPLTNLALALRRDPEIAKKIKRIVIMGGAFDGP 159 (312)
T ss_dssp HHHTTTSSTSS-HHSSSCHCHBHSSBHHHHHHHHHHHSSSTEEEEECS-SHHHHHHHHHHGGHHGGEEEEEEE---SSS-
T ss_pred hcccccCCCcccCcccccccccccccHHHHHHHHHHhcCCcEEEEecCcchhHHHHHHhChHHHhhceEEEEECCccccC
Confidence 8999999999766665443 35789999999999999999999999999999999999999999999999999999989
Q ss_pred CCCCccccccccCCHHHHHHHHHcCCcEEEEeccccceeecCHHHHHHHHh-cCCcHHHHHHHHHHHHHHhccccCCCcc
Q 019923 176 GNVNPAAEANIYGDPEAADVVFTSGANIAVVGINITTQVKLTDADFLELRQ-SKGRYVQLLGDMCKFYRDWHVKSDGVHG 254 (334)
Q Consensus 176 GN~~~~aEfN~~~DPeAA~~Vl~s~~~i~~v~ldvt~~~~~~~~~~~~l~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 254 (334)
||.+|.+|||||+|||||++||+|++|++++|+|+|+++.+++++++++.+ ..+++++|+.+++++|..++++. ..+
T Consensus 160 Gn~~~~aE~N~~~DP~AA~~Vl~s~~~i~~vpldvt~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 237 (312)
T PF01156_consen 160 GNVTPVAEFNFYCDPEAAQIVLESGIPITLVPLDVTHQVLLTPEFLDRLRAQSGSPLARFLRDLLRFYFDFYRDG--SDG 237 (312)
T ss_dssp -SSSSSC-HHHHHSHHHHHHHHCSSS-EEEE-HHHHTTSEEEHHHHHHHHHTCTCHHHHHHHHHHHHHHHHHHHH--SSS
T ss_pred CCCCccCCcCcccCHHHHHHHhhcCCCeEEEecCccccccCCHHHHHHHHhcCcchHHHHHHHHHHHHHhhhhhc--cCC
Confidence 999999999999999999999999999999999999999999999999987 56899999999999988877533 468
Q ss_pred cccchHHHHHHH-hcCCcee-eEEeeEEEEecC-CcceeEEEecCCcccccCCCCCCCCCcEEEeecCHHHHHHHHHHHH
Q 019923 255 IFLHDPVSFVAL-VRPDLFT-FKKGVVRVETQG-ICMGHTLMDQGLKRWNVSNPWTGYSPVSVAWTVNVDKVLNYIKRLL 331 (334)
Q Consensus 255 ~~l~D~la~a~~-~~p~l~~-~~~~~v~V~~~g-~~~G~tv~d~~~~~~~~~~~~~~~~~v~v~~~vD~~~f~~~l~~~l 331 (334)
+++||++|++++ ++|++|. +++.+++|+++| .+||+|++|+.. +.+.+|++|+.++|.++|+++|+++|
T Consensus 238 ~~~~D~la~~~~~~~P~~~~~~~~~~v~V~~~~~~~~G~t~~d~~~--------~~~~~~~~v~~~vd~~~f~~~~~~~l 309 (312)
T PF01156_consen 238 FPLHDPLAAAYAELDPELFTEFERGPVDVETDGGLTRGQTVVDREG--------SSGGPNVRVATDVDVDAFFDLLLERL 309 (312)
T ss_dssp EE-HHHHHHHHH-H-GGGEEEEEEEEEEEESSSSTTTTEEEEETTS--------TTSSECEEEEEEE-HHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHhCCccceecceEEEEEEECCCCCCceEEEeccc--------cCCCCcEEEeeecCHHHHHHHHHHHH
Confidence 999999999999 9999976 889999999997 899999998621 24678999999999999999999999
Q ss_pred hc
Q 019923 332 MK 333 (334)
Q Consensus 332 ~~ 333 (334)
.+
T Consensus 310 ~~ 311 (312)
T PF01156_consen 310 AR 311 (312)
T ss_dssp HH
T ss_pred hc
Confidence 75
No 14
>cd02647 nuc_hydro_TvIAG nuc_hydro_ TvIAG: Nucleoside hydrolases similar to the Inosine-adenosine-guanosine-preferring nucleoside hydrolase from Trypanosoma vivax. Nucleoside hydrolases cleave the N-glycosidic bond in nucleosides generating ribose and the respective base. Nucleoside hydrolases vary in their substrate specificity. This group contains eukaryotic and bacterial proteins similar to the purine specific inosine-adenosine-guanosine-preferring nucleoside hydrolase (IAG-NH) from T. vivax. T. vivax IAG-NH is of the order of a thousand to ten thousand fold more specific towards the naturally occurring purine nucleosides, than towards the pyrimidine nucleosides.
Probab=100.00 E-value=4e-71 Score=521.82 Aligned_cols=291 Identities=23% Similarity=0.348 Sum_probs=257.5
Q ss_pred ceEEEecCCCchHHHHHHHHHcCCCCeEEEEEEe--cCCCChHHHHHHHHHHHHHhCC-CCCCeeeCCCCCCCCCCCccc
Q 019923 20 AKLIIDTDPGIDDSMTILMAFQTPELEILGLTTI--FGNVTTEDATRNALTLCEMAGC-PGVPVAEGSPEPLKGGKPRVA 96 (334)
Q Consensus 20 ~~viiDtD~G~DD~~AL~~~l~~p~i~v~gIt~v--~Gn~~~~~~~~na~~ll~~~g~-~~IPV~~Ga~~pl~~~~~~~~ 96 (334)
+|||||||+|+||++||+|||++|+++|+|||++ +||++.+++++|++++|+.+|+ .+||||+|+..||... ..+
T Consensus 1 ~~vIiDtD~g~DDa~Al~~al~~p~i~l~gIt~v~~~GN~~~~~~~~na~~ll~~~g~~~dIPV~~Ga~~pL~~~--~~~ 78 (312)
T cd02647 1 KNVIFDHDGNVDDLVALLLLLKNEKVDLKGIGVSGIDADCYVEPAVSVTRKLIDRLGQRDAIPVGKGGSRAVNPF--PRS 78 (312)
T ss_pred CCEEEeCCCCchHHHHHHHHhhCCCcceEEEEEecCcCCccHHHHHHHHHHHHHHhCCCCCCCEEeCCCcCcccC--ccc
Confidence 6899999999999999999999999999999999 9999999999999999999999 8999999999999431 123
Q ss_pred ccccCCCCCCCCCCC----CCCCCCCCccHHHHHHHHHHcCCCceEEEEecchhHHHHHHhhCcchHhccceEEEecCCC
Q 019923 97 EFAHGSDGMGNISLT----PPKAKKCDKNASEFLVDKVSEYPGEVSILALGPLTNLALAIKRDSSFASKVKNIVVLGGAF 172 (334)
Q Consensus 97 ~~~hg~dGlg~~~~~----~~~~~~~~~~a~~~i~~~~~~~p~~vtila~GpLTNlA~al~~~P~~~~~i~~iviMGG~~ 172 (334)
...|+.+|+++...+ .+...+...+|+++|+++++++|++||||++|||||||+|++++|++.++||+||+|||++
T Consensus 79 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~a~~~i~~~~~~~~~~vtiva~GPLTNlA~al~~~P~~~~~i~~iviMGG~~ 158 (312)
T cd02647 79 WRRDAAFSVDHLPILNERYTVETPLAEETAQLVLIEKIKASLEPVTLLVTGPLTNLARALDSDPDISSNIEEVYIMGGGV 158 (312)
T ss_pred cccccccCcCcCCCCccccCCCCCcCcchHHHHHHHHHHhCCCCEEEEEcccHHHHHHHHHHChHHHhhcCEEEEeCCcc
Confidence 345666666543221 1222334678999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCC-----CccccccccCCHHHHHHHHHcCCcEEEEeccccceeecCHH----HHHHHHhcCCcHHHHHHHHHHHHH
Q 019923 173 FALGNV-----NPAAEANIYGDPEAADVVFTSGANIAVVGINITTQVKLTDA----DFLELRQSKGRYVQLLGDMCKFYR 243 (334)
Q Consensus 173 ~~~GN~-----~~~aEfN~~~DPeAA~~Vl~s~~~i~~v~ldvt~~~~~~~~----~~~~l~~~~~~~~~~l~~~~~~~~ 243 (334)
..+||+ +|.||||||+|||||++||+|++|++|+|||+|+++.++++ +++++.+.+++.++|+.+++++|.
T Consensus 159 ~~~GN~~~~~~tp~aEfNi~~DPeAA~iV~~s~~~i~~vpldvt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (312)
T cd02647 159 DAPGNVFTPPSNGTAEFNIFWDPLAAKTVFDSGLKITLVPLDATNTVPLTREFLETDRQRFAAQRLPASDLAGQGYALVK 238 (312)
T ss_pred CCCCccccCCCCCCcccccccCHHHHHHHHhCCCCEEEEccccccccccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 889998 99999999999999999999999999999999999999999 666777777899999999999998
Q ss_pred HhccccCCCcccccchHHHHHHHhcCCceeeEEee-EEEEecCCcceeEEEecCCcccccCCCCCCCCCcEEEeecCHHH
Q 019923 244 DWHVKSDGVHGIFLHDPVSFVALVRPDLFTFKKGV-VRVETQGICMGHTLMDQGLKRWNVSNPWTGYSPVSVAWTVNVDK 322 (334)
Q Consensus 244 ~~~~~~~~~~~~~l~D~la~a~~~~p~l~~~~~~~-v~V~~~g~~~G~tv~d~~~~~~~~~~~~~~~~~v~v~~~vD~~~ 322 (334)
+++ +..++++||++|++++++|+++++++.+ ++||++|.+||+|++|.. .+|++|++++|.+.
T Consensus 239 ~~~----~~~g~~~hD~lava~~~~p~~~~~~~~~~v~Ve~~g~t~G~Tv~d~~------------~~n~~v~~~vd~~~ 302 (312)
T cd02647 239 PLE----FNSTYYMWDVLTTLVLGAKEVDNTKESLILEVDTDGLSAGQTVTSPN------------GRPLTLVTSNNSYG 302 (312)
T ss_pred hhc----CCCCccccHHHHHHHHcCchhcccccccceEEEECCCCCceEEEcCC------------CCCeEEEEeeCccc
Confidence 876 4568899999999999999999999888 999999989999999953 36899999999988
Q ss_pred HHHHHH
Q 019923 323 VLNYIK 328 (334)
Q Consensus 323 f~~~l~ 328 (334)
..+.|.
T Consensus 303 ~~~~~~ 308 (312)
T cd02647 303 SNRFFD 308 (312)
T ss_pred chhhhh
Confidence 544443
No 15
>cd02648 nuc_hydro_1 NH_1: A subgroup of nucleoside hydrolases. This group contains fungal proteins similar to nucleoside hydrolases. Nucleoside hydrolases cleave the N-glycosidic bond in nucleosides generating ribose and the respective base. These enzymes vary in their substrate specificity.
Probab=100.00 E-value=1.2e-69 Score=513.80 Aligned_cols=277 Identities=34% Similarity=0.497 Sum_probs=244.7
Q ss_pred CceEEEecCCCchHHHHHHHHHcCCC-CeEEEEEEecCCCChHHHHHHHHHHHHHhCCC------------------CCC
Q 019923 19 PAKLIIDTDPGIDDSMTILMAFQTPE-LEILGLTTIFGNVTTEDATRNALTLCEMAGCP------------------GVP 79 (334)
Q Consensus 19 ~~~viiDtD~G~DD~~AL~~~l~~p~-i~v~gIt~v~Gn~~~~~~~~na~~ll~~~g~~------------------~IP 79 (334)
++|||||||+|+||++||++||.+|+ ++|+|||+|+||++.+++++|++++|+++|+. +||
T Consensus 1 p~kiIiDtDpG~DDa~AillAl~~p~~~ev~gITtv~GN~~~~~~~~Nal~~l~~~gr~~~~~~~~~~~~~~~~~~~~iP 80 (367)
T cd02648 1 PHPIIIDTDPGVDDVLAILLALSSPEEVDVALISLTFGNTTLDHALRNVLRLFHVLERERAWRATPGVRYRAFSADAEKP 80 (367)
T ss_pred CCeEEEECCCCHHHHHHHHHHHhCCCCcEEEEEEecCCCcCHHHHHHHHHHHHHHhCCcccccccccccccccccCCCCC
Confidence 46999999999999999999999999 99999999999999999999999999999987 699
Q ss_pred -eeeCCCCCCCCCCCcccccccCCCCCCCCCC--CC----CC--------CCCCCccHHHHHHHHHHcCCC-ceEEEEec
Q 019923 80 -VAEGSPEPLKGGKPRVAEFAHGSDGMGNISL--TP----PK--------AKKCDKNASEFLVDKVSEYPG-EVSILALG 143 (334)
Q Consensus 80 -V~~Ga~~pl~~~~~~~~~~~hg~dGlg~~~~--~~----~~--------~~~~~~~a~~~i~~~~~~~p~-~vtila~G 143 (334)
|++|+.+||.++. ..+.++||.||||+..+ |. +. ..+..++|+++|+++++++|+ +|+||++|
T Consensus 81 ~V~~Ga~~PL~~~~-~~a~~~HG~dGlgg~~~~~p~~~p~~~~~~~~~~~~~~~~~~A~~~i~~~~~~~p~~~itivalG 159 (367)
T cd02648 81 IVASGSDQPLEGER-LTASYFHGRDGLSGVHWLHPDFTPVETWIPEIVAPLTPSDKPAYDVILDILREEPDHTVTIAALG 159 (367)
T ss_pred EEEcCCCcccCCCC-cccCccCCCCCCCCccccCCccccccccccccccccCcCCccHHHHHHHHHHhCCCCcEEEEEcc
Confidence 9999999998864 45778999999999864 21 11 234568899999999999985 79999999
Q ss_pred chhHHHHHHhhCcchHhccceEEEecCCCCCCCCCCccccccccCCHHHHHHHHHc----------CCcEEEEeccccce
Q 019923 144 PLTNLALAIKRDSSFASKVKNIVVLGGAFFALGNVNPAAEANIYGDPEAADVVFTS----------GANIAVVGINITTQ 213 (334)
Q Consensus 144 pLTNlA~al~~~P~~~~~i~~iviMGG~~~~~GN~~~~aEfN~~~DPeAA~~Vl~s----------~~~i~~v~ldvt~~ 213 (334)
||||||+|++++|++.++||+||+|||++..+||++|.+|||||+|||||++||++ ++|++|+|||+|++
T Consensus 160 PLTNiA~al~~~P~~~~~Ik~IviMGG~~~~~GN~tp~aEfNi~~DPeAA~iV~~~~~~~~~~s~~~~~i~mvpLDvT~~ 239 (367)
T cd02648 160 PLTNLAAAARKDPETFAKVGEVVVMGGAIDVPGNTSPVAEFNCFADPYAAAVVIDEPPSTAPEARRKLPLQVFPLDITTG 239 (367)
T ss_pred cHHHHHHHHHHChHHHhhhcEEEEeCCcccCCCCCCccchhhcccCHHHHHHHHhccccccccccCCCCeEEEeecCCCC
Confidence 99999999999999999999999999999888999999999999999999999984 56999999999999
Q ss_pred eecCHHHH-----HHHHh--cCCcHHHHHHHH-----HHHHHHhccccCCCccc---ccchHHHHHHHhcCC--------
Q 019923 214 VKLTDADF-----LELRQ--SKGRYVQLLGDM-----CKFYRDWHVKSDGVHGI---FLHDPVSFVALVRPD-------- 270 (334)
Q Consensus 214 ~~~~~~~~-----~~l~~--~~~~~~~~l~~~-----~~~~~~~~~~~~~~~~~---~l~D~la~a~~~~p~-------- 270 (334)
+.++++++ +.+.+ .+++.++|+.++ +++|++++.+.++..++ .+||++|++++++|+
T Consensus 240 ~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~lHD~lava~~i~p~~~~~~~~~ 319 (367)
T cd02648 240 HTLPYSSLFATYVTPRDAPERGSPLARWLEHVFISTFLTHPRAFTPEEFLPDRSELFEMHDPLAVWYAIFADMPATGSID 319 (367)
T ss_pred eeeCHHHhhhhHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCCCCCcHHHhHhhcCcccccccccc
Confidence 99998774 44555 568899975554 44888877765554555 899999999999999
Q ss_pred --ceeeEEeeEEEEecC-CcceeEEEecC
Q 019923 271 --LFTFKKGVVRVETQG-ICMGHTLMDQG 296 (334)
Q Consensus 271 --l~~~~~~~v~V~~~g-~~~G~tv~d~~ 296 (334)
+|++++.+++||++| .|||+|++|++
T Consensus 320 ~~~~~~~~~~v~Ve~~g~~trG~tV~D~~ 348 (367)
T cd02648 320 GNGWKHTPRDFRVETSGQWTRGMCVVDRR 348 (367)
T ss_pred cceEEEEEecEEEEeCCCCCCceEEEecC
Confidence 889999999999997 79999999964
No 16
>KOG2938 consensus Predicted inosine-uridine preferring nucleoside hydrolase [Nucleotide transport and metabolism]
Probab=100.00 E-value=2.2e-55 Score=413.68 Aligned_cols=315 Identities=37% Similarity=0.500 Sum_probs=267.1
Q ss_pred cccCCCCCceEEEecCCCchHHHHHHHHHcCCCCeEEEEEEecCCCChHHHHHHHHHHHHHhCCCCCCeeeCCCCCCCCC
Q 019923 12 VLGSSTNPAKLIIDTDPGIDDSMTILMAFQTPELEILGLTTIFGNVTTEDATRNALTLCEMAGCPGVPVAEGSPEPLKGG 91 (334)
Q Consensus 12 ~~~~~~~~~~viiDtD~G~DD~~AL~~~l~~p~i~v~gIt~v~Gn~~~~~~~~na~~ll~~~g~~~IPV~~Ga~~pl~~~ 91 (334)
-.+.+..++++|||||+|.||++||++++.+|+++++|+|||+||++++++++||+++|+.+||.+||||+|+.+||.+.
T Consensus 14 ~~~~~~~~~~iiid~D~~~Dd~~al~la~~~~~~~ilglTtv~Gn~~~~~t~~NA~~~L~l~~r~dIPV~~Ga~kpl~~~ 93 (350)
T KOG2938|consen 14 ELDAASYKRKIIIDCDPGSDDAFALLLALLGPELEILGLTTVHGNVTVEDTDRNALDLLSLLGRLDIPVYEGAAKPLIRS 93 (350)
T ss_pred cccccccceeEEEeCCCCcccHHHHHHHhcCccceeEeeeEeeCCccHhhhhhhHHHHHHhcCCcCCCchhcccccccCC
Confidence 33566678999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCcccccccCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHcCCCceEEEEecchhHHHHHHhhCcchHhccceEEEecCC
Q 019923 92 KPRVAEFAHGSDGMGNISLTPPKAKKCDKNASEFLVDKVSEYPGEVSILALGPLTNLALAIKRDSSFASKVKNIVVLGGA 171 (334)
Q Consensus 92 ~~~~~~~~hg~dGlg~~~~~~~~~~~~~~~a~~~i~~~~~~~p~~vtila~GpLTNlA~al~~~P~~~~~i~~iviMGG~ 171 (334)
...++.++||.||+++..+|.|+.....+++++++++...++|++|||+++|||||||++++.+|++.+++|+++||||+
T Consensus 94 ~~~~a~~~hG~dGl~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~It~va~GPLTNlAla~~~~pd~~~~v~~ivimGG~ 173 (350)
T KOG2938|consen 94 PNDWANAFHGIDGLGDILLPPPRDDINVGHGAEFAIEQDIAYPGEITIVAYGPLTNLALALALDPDFLKNVKRIVIMGGN 173 (350)
T ss_pred ccchhhhhccccccCCcccCCccccccccccHHHHHHHhhcCCCCceEEEeccchHHHHHhhcChhHhhccccEEEeccc
Confidence 76688999999999998888877777889999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCccccccccCCHHHHHHHHHcC-CcEEEEeccccceeecCHHHHHHHHh---cCCcHHHHHHHHHHHHHHhcc
Q 019923 172 FFALGNVNPAAEANIYGDPEAADVVFTSG-ANIAVVGINITTQVKLTDADFLELRQ---SKGRYVQLLGDMCKFYRDWHV 247 (334)
Q Consensus 172 ~~~~GN~~~~aEfN~~~DPeAA~~Vl~s~-~~i~~v~ldvt~~~~~~~~~~~~l~~---~~~~~~~~l~~~~~~~~~~~~ 247 (334)
+.+.||+++.||||++.|||||++||++. .+++++|+++|++..+|....-.+.. ..+++..|+.....++..+.
T Consensus 174 ~~~~gnv~~~AefN~~~DPeAA~~vl~~~k~~~~v~pi~i~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 252 (350)
T KOG2938|consen 174 YYGNGNVTHGAEFNFYRDPEAAHTVLTRTKDPITVGPINITHQGSLTNLALIRLSNRKNKHPILESYLSLGTARQQVYN- 252 (350)
T ss_pred cccccCcCccccccccCChHHHHHHHhcCCCceeEeeeeeeeccccchhhhhhhhhhccCCchhHHhhhhhHHhhhccc-
Confidence 99899999999999999999999999997 67889999999999998766655443 33444455544333333222
Q ss_pred ccCCCcccccchHHHHHHHhcCCceeeEE--eeEEEEecCCcceeEEEecCCcccccCCCCCCCCCcEEEeecCHHHHHH
Q 019923 248 KSDGVHGIFLHDPVSFVALVRPDLFTFKK--GVVRVETQGICMGHTLMDQGLKRWNVSNPWTGYSPVSVAWTVNVDKVLN 325 (334)
Q Consensus 248 ~~~~~~~~~l~D~la~a~~~~p~l~~~~~--~~v~V~~~g~~~G~tv~d~~~~~~~~~~~~~~~~~v~v~~~vD~~~f~~ 325 (334)
..++...+..+|..++++++.|+.+..+. ..+.+.+..+++|+.+++.-.. ...-..+++....+|..+|+.
T Consensus 253 ~~~G~~~~~~~d~~~~a~~i~~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~------~~~~~~~v~~~~~~~~~~f~~ 326 (350)
T KOG2938|consen 253 GAYGNIFTPYPDNIYVAFAIFPDPLAAKTVYVSVDVLLDSPTRGQMVVDHLPA------KLDYPANVTKITTVDVVKFLT 326 (350)
T ss_pred ccCCccCCCCCcHHHHHHHhhhhhhhhhhhhheeeeeecCcceeeeEEecchh------hhcccccceeecccccchhee
Confidence 22455566689999999999999876653 3566667779999999984211 112356899999999999999
Q ss_pred HHHHHHhc
Q 019923 326 YIKRLLMK 333 (334)
Q Consensus 326 ~l~~~l~~ 333 (334)
.+...|.+
T Consensus 327 ~~~~~l~~ 334 (350)
T KOG2938|consen 327 LRIQVLGR 334 (350)
T ss_pred hhhhhhhh
Confidence 88877653
No 17
>cd02652 nuc_hydro_2 NH_2: A subgroup of nucleoside hydrolases. This group contains eukaryotic and bacterial proteins similar to nucleoside hydrolases. Nucleoside hydrolases cleave the N-glycosidic bond in nucleosides generating ribose and the respective base. These enzymes vary in their substrate specificity.
Probab=100.00 E-value=9.8e-47 Score=351.16 Aligned_cols=239 Identities=27% Similarity=0.398 Sum_probs=183.8
Q ss_pred EEEecCCC--chHHHHHHHHHcCCCCeEEEEEEecCCCChHHHHHHHHHHHHHhCCCCCCeeeCCCCCCCCCCC-ccccc
Q 019923 22 LIIDTDPG--IDDSMTILMAFQTPELEILGLTTIFGNVTTEDATRNALTLCEMAGCPGVPVAEGSPEPLKGGKP-RVAEF 98 (334)
Q Consensus 22 viiDtD~G--~DD~~AL~~~l~~p~i~v~gIt~v~Gn~~~~~~~~na~~ll~~~g~~~IPV~~Ga~~pl~~~~~-~~~~~ 98 (334)
||||||+| +||++||++++.+|+++|+|||+++||++.+ .|+..+..++|+.+|||++| .|+..... ....+
T Consensus 1 vIlDTD~G~DiDDa~Al~lal~~p~~~llgIT~~~GN~~~~---~~~~~~n~~~gr~dIPVg~~--~~~~~~~~~~~~~~ 75 (293)
T cd02652 1 LILDTDIGGDPDDALALALAHALQKCDLLAVTITLADASAR---RAIDAVNRFYGRGDIPIGAD--YHGWPEDAKDHAKF 75 (293)
T ss_pred CEEeCCCCCChHHHHHHHHHhhCCCCceEEEEecCCcccHh---HHHHHHHHhcCCCCCcEeeC--CCCCCCccccccce
Confidence 69999999 7999999999999999999999999999887 56666777799999999664 55544321 12223
Q ss_pred ccCCCCCCCCCCCCCC-CCCCCccHHHHHHHHHHcC-CCceEEEEecchhHHHHHHhh------Ccch-HhccceEEEec
Q 019923 99 AHGSDGMGNISLTPPK-AKKCDKNASEFLVDKVSEY-PGEVSILALGPLTNLALAIKR------DSSF-ASKVKNIVVLG 169 (334)
Q Consensus 99 ~hg~dGlg~~~~~~~~-~~~~~~~a~~~i~~~~~~~-p~~vtila~GpLTNlA~al~~------~P~~-~~~i~~iviMG 169 (334)
.||.++ ++.+. ..+...+|+++|+++++++ |++|+||++|||||||++|+. +|++ .+|||+||+||
T Consensus 76 ~~~~~~-----~~~~~~~~~~~~~A~~~i~~~l~~~~~~~vtivaiGplTNlA~ll~~~~d~l~~pel~~~kvk~lviMG 150 (293)
T cd02652 76 LLEGDR-----LHHDLESAEDALDAVKALRRLLASAEDASVTIVSIGPLTNLAALLDADADPLTGPELVRQKVKRLVVMG 150 (293)
T ss_pred eCCCCC-----CCCcccccccCccHHHHHHHHHHhcCCCCEEEEEcccHHHHHHHHHhccccccCcHHHHhhCCEEEEeC
Confidence 344333 32222 2223568999999999997 789999999999999999999 9999 58999999999
Q ss_pred CCCC-CCCCCCccccccccCCHHHHHHHHHc----CCcEEE--EeccccceeecCHHHHHHHHhcCCcHHHHHHHHHHHH
Q 019923 170 GAFF-ALGNVNPAAEANIYGDPEAADVVFTS----GANIAV--VGINITTQVKLTDADFLELRQSKGRYVQLLGDMCKFY 242 (334)
Q Consensus 170 G~~~-~~GN~~~~aEfN~~~DPeAA~~Vl~s----~~~i~~--v~ldvt~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~ 242 (334)
|++. ..||++ .+||||++||+||++||++ ++|++| +++|+++++....... ......+ .+.+.|
T Consensus 151 G~~~~~~Gn~~-~aE~N~~~Dp~AA~~V~~~~~~~g~p~~~V~~~~ev~~~~~~~~~~~-~~~~~~~-------p~~~~y 221 (293)
T cd02652 151 GAFYDPDGNVQ-HREYNFVTDPKAAQRVAGRAQHLGIPVRIVWSGYELGEAVSYPHVLV-IAHPFNT-------PVFAAY 221 (293)
T ss_pred CCccCCCCCcc-hhhhhcccCHHHHHHHHhcccccCCCEEEEecCHHHhccccCchhhh-hcccccc-------hHHHHH
Confidence 9983 569988 9999999999999999999 899988 6999999987665411 1111112 334444
Q ss_pred HHhccccCCCcccccchHHHHHHHhcCC--ceeeEE-----eeEEEEecC
Q 019923 243 RDWHVKSDGVHGIFLHDPVSFVALVRPD--LFTFKK-----GVVRVETQG 285 (334)
Q Consensus 243 ~~~~~~~~~~~~~~l~D~la~a~~~~p~--l~~~~~-----~~v~V~~~g 285 (334)
..+. ...++||++|++++++|+ +|+.++ ..|+|..+|
T Consensus 222 ~~~~------~~~~~wD~~t~l~av~~~~~~F~~~~~~~g~g~v~~~~~G 265 (293)
T cd02652 222 WPRS------HRRPLWDPLTLLAAVRGGGMLFDLREVQLGPGRVEVDSSG 265 (293)
T ss_pred Hhcc------CCccchHHHHHHHeeCCcCCccccccccCCCceEEEcCCC
Confidence 4332 126899999999999997 787654 456665555
No 18
>PF07632 DUF1593: Protein of unknown function (DUF1593); InterPro: IPR011483 This is a family of proteins found in Rhodopirellula baltica that are predicted to be secreted. Also, a member has been identified in Caulobacter crescentus (Caulobacter vibrioides) (Q9AAT9 from SWISSPROT). These proteins may be related to IPR001910 from INTERPRO.; PDB: 2YHG_A.
Probab=98.50 E-value=1.1e-07 Score=86.75 Aligned_cols=143 Identities=18% Similarity=0.226 Sum_probs=80.8
Q ss_pred eEEEecCCC--chHHHHHHHHH-cCCCCeEEEEEEecCCC-ChHHHHHHHHHHHHHhCCCCCCeeeCCCCCCCCCCCccc
Q 019923 21 KLIIDTDPG--IDDSMTILMAF-QTPELEILGLTTIFGNV-TTEDATRNALTLCEMAGCPGVPVAEGSPEPLKGGKPRVA 96 (334)
Q Consensus 21 ~viiDtD~G--~DD~~AL~~~l-~~p~i~v~gIt~v~Gn~-~~~~~~~na~~ll~~~g~~~IPV~~Ga~~pl~~~~~~~~ 96 (334)
||||=||+| +||..+|+-+| .+.++|+.||+.+.+-- ...-..+.+.++++.+++ ..|=-.=-..+...++...+
T Consensus 1 RviV~TDi~~EpDD~~SlvR~LlYsNe~dieGivattS~~~~~~~~~~~i~~iIdaY~k-v~pNL~~H~~~yPs~e~L~s 79 (260)
T PF07632_consen 1 RVIVLTDIGNEPDDAQSLVRLLLYSNEFDIEGIVATTSTWHWSGVHPEWIHRIIDAYEK-VYPNLNKHAPGYPSPEYLRS 79 (260)
T ss_dssp EEEEEE-TTS-THHHHHHHHHHHTGGGSEEEEEEE--BTTB------HHHHHHHHHHHH-HHHHHTTTSTT---HHHHHH
T ss_pred CEEEeCCCCCCCchHHHHHHHHHhccccceeEEEEecccccCCCCCHHHHHHHHHHHHH-HHHHHHhcCCCCCCHHHHHH
Confidence 699999995 99999998766 47789999999886511 111233456667766652 11100000000000000001
Q ss_pred ccccCCC--CCCCCCCCCCCCCCCCccHHHHHHHHHHcC-CCceEEEEecchhHHHHHHhh---------CcchHhccce
Q 019923 97 EFAHGSD--GMGNISLTPPKAKKCDKNASEFLVDKVSEY-PGEVSILALGPLTNLALAIKR---------DSSFASKVKN 164 (334)
Q Consensus 97 ~~~hg~d--Glg~~~~~~~~~~~~~~~a~~~i~~~~~~~-p~~vtila~GpLTNlA~al~~---------~P~~~~~i~~ 164 (334)
-...|.- |+.. .+.-.+.++.++|++.+.+. +.+|.|++.|....||.||.. .+++.+|+ +
T Consensus 80 ~vk~G~~~yg~~~------~G~~~~s~GS~lIi~~~~~~d~rPLwi~~WGG~ntlAqAL~~i~~~~~~~~~~~~~~Kl-r 152 (260)
T PF07632_consen 80 IVKQGNPVYGMPA------VGEGKDSEGSELIIEALDKDDPRPLWILVWGGTNTLAQALWDIKETRSPEEAARFVSKL-R 152 (260)
T ss_dssp TEEE--SS-GGGG-------STT---HHHHHHHHHHHSS-SS-EEEEESS-SHHHHHHHHHHHHHS-HHHHHHHHHTE-E
T ss_pred HHccCCcccCccc------CCCCCCChHHHHHHHHHcCCCCCCEEEEecCCHHHHHHHHHHHHHhcCHHHHHHHHhhE-E
Confidence 1111211 1111 11112478999999999986 789999999999999999998 78899999 6
Q ss_pred EEEecCC
Q 019923 165 IVVLGGA 171 (334)
Q Consensus 165 iviMGG~ 171 (334)
||..++-
T Consensus 153 vy~I~dQ 159 (260)
T PF07632_consen 153 VYSISDQ 159 (260)
T ss_dssp EEEES--
T ss_pred EEeccCC
Confidence 8887653
No 19
>PF14097 SpoVAE: Stage V sporulation protein AE1
Probab=75.25 E-value=3.2 Score=35.72 Aligned_cols=26 Identities=19% Similarity=0.408 Sum_probs=23.5
Q ss_pred HHHHHHHHcCCCCeEEEEEEecCCCC
Q 019923 33 SMTILMAFQTPELEILGLTTIFGNVT 58 (334)
Q Consensus 33 ~~AL~~~l~~p~i~v~gIt~v~Gn~~ 58 (334)
-.||.+.+.+|+|+|+|+..|+.|+.
T Consensus 71 E~Al~~v~~h~~IeVLG~iAVASnT~ 96 (180)
T PF14097_consen 71 EQALEYVANHPDIEVLGAIAVASNTH 96 (180)
T ss_pred HHHHHHHHcCCCceEEEEEEEEecCC
Confidence 47999999999999999999988865
No 20
>PF10609 ParA: ParA/MinD ATPase like; InterPro: IPR019591 This entry represents ATPases involved in plasmid partitioning []. It also contains cytosolic Fe-S cluster assembling factors, NBP35 and CFD1 which are required for biogenesis and export of both ribosomal subunits probably through assembling the ISCs in RLI1, a protein which performs rRNA processing and ribosome export [, , ].; PDB: 2PH1_A 3KB1_B.
Probab=74.78 E-value=8.6 Score=29.09 Aligned_cols=54 Identities=24% Similarity=0.261 Sum_probs=30.5
Q ss_pred eEEEecCCCc-hHHHHHHHHHcCCCCeEEEEEEecCCCChHHHHHHHHHHHHHhCCCCCCee
Q 019923 21 KLIIDTDPGI-DDSMTILMAFQTPELEILGLTTIFGNVTTEDATRNALTLCEMAGCPGVPVA 81 (334)
Q Consensus 21 ~viiDtD~G~-DD~~AL~~~l~~p~i~v~gIt~v~Gn~~~~~~~~na~~ll~~~g~~~IPV~ 81 (334)
.+|||+-+|. |..++++-.+.. -..+-|| +.-. -+...++|.++++.+..+||.
T Consensus 3 ~LiiD~PPGTgD~~l~~~~~~~~--~g~ivVT-TPq~----la~~dv~r~~~~~~~~~vpil 57 (81)
T PF10609_consen 3 YLIIDLPPGTGDEHLTLMQYLPI--DGAIVVT-TPQE----LALADVRRAIDMFRKLNVPIL 57 (81)
T ss_dssp EEEEE--SCSSSHHHHHHHHH----SEEEEEE--CCC------HHHHHHHHHHHHCTT-EEE
T ss_pred EEEEeCCCCCCcHHHHHHHhCCC--CeEEEEe-CCHH----HHHHHHHHHHHHHHhcCCCcE
Confidence 5899999996 555666666652 2233333 2333 344577888888888889976
No 21
>KOG2938 consensus Predicted inosine-uridine preferring nucleoside hydrolase [Nucleotide transport and metabolism]
Probab=73.75 E-value=1.8 Score=41.83 Aligned_cols=87 Identities=26% Similarity=0.308 Sum_probs=66.1
Q ss_pred CccHHHHHHHHHHcCC---CceEEEEecchhHHHHHHhhCcchHhccceEEEecCCCCC------CCCC------Ccccc
Q 019923 119 DKNASEFLVDKVSEYP---GEVSILALGPLTNLALAIKRDSSFASKVKNIVVLGGAFFA------LGNV------NPAAE 183 (334)
Q Consensus 119 ~~~a~~~i~~~~~~~p---~~vtila~GpLTNlA~al~~~P~~~~~i~~iviMGG~~~~------~GN~------~~~aE 183 (334)
+++|++-..+.. +.| .++.+...+++|+.+.....++.-...+.+.++++|.... .||. ...++
T Consensus 191 DPeAA~~vl~~~-k~~~~v~pi~i~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~d~~~~a 269 (350)
T KOG2938|consen 191 DPEAAHTVLTRT-KDPITVGPINITHQGSLTNLALIRLSNRKNKHPILESYLSLGTARQQVYNGAYGNIFTPYPDNIYVA 269 (350)
T ss_pred ChHHHHHHHhcC-CCceeEeeeeeeeccccchhhhhhhhhhccCCchhHHhhhhhHHhhhcccccCCccCCCCCcHHHHH
Confidence 677877555554 333 4578889999999999999888888888899999998753 2443 34789
Q ss_pred ccccCCHHHHHHHHHcCCcEEEE
Q 019923 184 ANIYGDPEAADVVFTSGANIAVV 206 (334)
Q Consensus 184 fN~~~DPeAA~~Vl~s~~~i~~v 206 (334)
||++-||-+++.++.+..-.+..
T Consensus 270 ~~i~~d~~~~~~~~~~~~~~~~~ 292 (350)
T KOG2938|consen 270 FAIFPDPLAAKTVYVSVDVLLDS 292 (350)
T ss_pred HHhhhhhhhhhhhhheeeeeecC
Confidence 99999999999988875443333
No 22
>COG2248 Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]
Probab=68.30 E-value=11 Score=34.92 Aligned_cols=77 Identities=21% Similarity=0.295 Sum_probs=42.6
Q ss_pred HHHHHHHHhCCC--CCCeeeCCCCCCCCC-CCcccccccCCCC--CCCCC------------CCCCCCCCCCccHHHHHH
Q 019923 65 NALTLCEMAGCP--GVPVAEGSPEPLKGG-KPRVAEFAHGSDG--MGNIS------------LTPPKAKKCDKNASEFLV 127 (334)
Q Consensus 65 na~~ll~~~g~~--~IPV~~Ga~~pl~~~-~~~~~~~~hg~dG--lg~~~------------~~~~~~~~~~~~a~~~i~ 127 (334)
-+.++|+.++-- +|-.+-|-..-+-+. -....+.+||.+| ||-+. +......|...++.+||+
T Consensus 119 Ra~~fl~~~~~~~~~ie~ADgk~f~fG~t~IefS~pvpHG~eGskLGyVl~v~V~dg~~~i~faSDvqGp~~~~~l~~i~ 198 (304)
T COG2248 119 RAYRFLESLKDIAREIEYADGKTFEFGGTVIEFSPPVPHGREGSKLGYVLMVAVTDGKSSIVFASDVQGPINDEALEFIL 198 (304)
T ss_pred HHHHHHHHhhhhcceeEecCCceEEeCCEEEEecCCCCCCCcccccceEEEEEEecCCeEEEEcccccCCCccHHHHHHH
Confidence 355666665521 344444444333221 0134567899986 45321 111122356678888887
Q ss_pred HHHHcCCCceEEEEecchh
Q 019923 128 DKVSEYPGEVSILALGPLT 146 (334)
Q Consensus 128 ~~~~~~p~~vtila~GpLT 146 (334)
+. .+-.++.-||.|
T Consensus 199 e~-----~P~v~ii~GPpt 212 (304)
T COG2248 199 EK-----RPDVLIIGGPPT 212 (304)
T ss_pred hc-----CCCEEEecCCch
Confidence 65 457788889999
No 23
>PF00455 DeoRC: DeoR C terminal sensor domain; InterPro: IPR014036 The deoR-type HTH domain is a DNA-binding, helix-turn-helix (HTH) domain of about 50-60 amino acids present in transcription regulators of the deoR family, involved in sugar catabolism. This family of prokaryotic regulators is named after Escherichia coli deoR, a repressor of the deo operon, which encodes nucleotide and deoxyribonucleotide catabolic enzymes. DeoR also negatively regulates the expression of nupG and tsx, a nucleoside-specific transport protein and a channel-forming protein, respectively. DeoR-like transcription repressors occur in diverse bacteria as regulators of sugar and nucleoside metabolic systems. The effector molecules for deoR-like regulators are generally phosphorylated intermediates of the relevant metabolic pathway. The DNA-binding deoR-type HTH domain occurs usually in the N-terminal part. The C-terminal part can contain an effector-binding domain and/or an oligomerization domain. DeoR occurs as an octamer, whilst glpR and agaR are tetramers. Several operators may be bound simultaneously, which could facilitate DNA looping [, ].
Probab=68.19 E-value=21 Score=30.38 Aligned_cols=74 Identities=12% Similarity=0.218 Sum_probs=55.4
Q ss_pred cHHHHHHHHHHcCCCceEEEEecchhHHHHHHhhCcchHhccceEEEecCCCCCCCCCCccccccccCCHHHHHHHHHcC
Q 019923 121 NASEFLVDKVSEYPGEVSILALGPLTNLALAIKRDSSFASKVKNIVVLGGAFFALGNVNPAAEANIYGDPEAADVVFTSG 200 (334)
Q Consensus 121 ~a~~~i~~~~~~~p~~vtila~GpLTNlA~al~~~P~~~~~i~~iviMGG~~~~~GN~~~~aEfN~~~DPeAA~~Vl~s~ 200 (334)
.-...|.+.+...+ ++||++-.. ++|..|..+|++ +|+++||.+.. +...+..|.|.+.+-+-.
T Consensus 29 tT~~~la~~L~~~~-~ltVvTnsl--~ia~~l~~~~~~-----~vi~~GG~~~~--------~~~~~~G~~a~~~l~~~~ 92 (161)
T PF00455_consen 29 TTTLELAKYLPDKK-NLTVVTNSL--PIANELSENPNI-----EVILLGGEVNP--------KSLSFVGPIALEALRQFR 92 (161)
T ss_pred hHHHHHHHHhhcCC-ceEEEECCH--HHHHHHHhcCce-----EEEEeCCEEEc--------CCCcEECchHHHHHHhhc
Confidence 34566778777664 799998764 577788888843 79999999963 345578899988887777
Q ss_pred CcEEEEeccc
Q 019923 201 ANIAVVGINI 210 (334)
Q Consensus 201 ~~i~~v~ldv 210 (334)
..+.+++.+-
T Consensus 93 ~d~afi~~~g 102 (161)
T PF00455_consen 93 FDKAFIGADG 102 (161)
T ss_pred cceEEecccE
Confidence 7888887663
No 24
>PRK09802 DNA-binding transcriptional regulator AgaR; Provisional
Probab=63.18 E-value=32 Score=31.93 Aligned_cols=74 Identities=12% Similarity=0.204 Sum_probs=52.1
Q ss_pred cHHHHHHHHHHcCCCceEEEEecchhHHHHHHhhCcchHhccceEEEecCCCCCCCCCCccccccccCCHHHHHHHHHcC
Q 019923 121 NASEFLVDKVSEYPGEVSILALGPLTNLALAIKRDSSFASKVKNIVVLGGAFFALGNVNPAAEANIYGDPEAADVVFTSG 200 (334)
Q Consensus 121 ~a~~~i~~~~~~~p~~vtila~GpLTNlA~al~~~P~~~~~i~~iviMGG~~~~~GN~~~~aEfN~~~DPeAA~~Vl~s~ 200 (334)
.-...|++.+... .++||++... ++|..|..+|++ ++++.||.+. .+.+....|.|.+.+=+-.
T Consensus 116 tT~~~la~~L~~~-~~ltVvTnsl--~ia~~l~~~~~~-----~v~llGG~~~--------~~~~~~~G~~a~~~l~~~~ 179 (269)
T PRK09802 116 TTTFEIARLMRKH-TDVIAMTNGM--NVANALLEAEGV-----ELLMTGGHLR--------RQSQSFYGDQAEQSLQNYH 179 (269)
T ss_pred hHHHHHHHhcCcC-CCeEEEeCCH--HHHHHHHhCCCC-----EEEEECCEEe--------cCCCceECHHHHHHHHhcc
Confidence 3445566666433 2588888764 567777777764 6999999996 3456688899998887767
Q ss_pred CcEEEEeccc
Q 019923 201 ANIAVVGINI 210 (334)
Q Consensus 201 ~~i~~v~ldv 210 (334)
+.+.+++.+-
T Consensus 180 ~d~afig~~g 189 (269)
T PRK09802 180 FDMLFLGVDA 189 (269)
T ss_pred CCEEEEcCce
Confidence 7888887653
No 25
>PF03054 tRNA_Me_trans: tRNA methyl transferase; InterPro: IPR004506 tRNA-specific 2-thiouridylase catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34.; GO: 0016740 transferase activity, 0008033 tRNA processing, 0005737 cytoplasm; PDB: 2DET_A 2DER_A 2DEU_A 2HMA_A.
Probab=61.44 E-value=28 Score=33.80 Aligned_cols=59 Identities=19% Similarity=0.332 Sum_probs=39.7
Q ss_pred ceEEEecCCCchHHHHHHHHHcCCCCeEEEEEEecCCCC--------hHHHHHHHHHHHHHhCCCCCCeee
Q 019923 20 AKLIIDTDPGIDDSMTILMAFQTPELEILGLTTIFGNVT--------TEDATRNALTLCEMAGCPGVPVAE 82 (334)
Q Consensus 20 ~~viiDtD~G~DD~~AL~~~l~~p~i~v~gIt~v~Gn~~--------~~~~~~na~~ll~~~g~~~IPV~~ 82 (334)
+||++=+-.|+|-++|..++... ..+|.||+....+.. .++....|+++.+.+| ||.+.
T Consensus 1 ~kV~vamSGGVDSsvaA~LLk~~-G~~V~Gv~m~~~~~~~~~~~~c~~~~d~~~a~~va~~Lg---Ip~~v 67 (356)
T PF03054_consen 1 KKVLVAMSGGVDSSVAAALLKEQ-GYDVIGVTMRNWDEEDESGKSCCSEEDIEDARRVAEKLG---IPHYV 67 (356)
T ss_dssp -EEEEE--SSHHHHHHHHHHHHC-T-EEEEEEEE-SS-SSSHH-HHHHHHHHHHHHHHHHHHT-----EEE
T ss_pred CeEEEEccCCHHHHHHHHHHHhh-cccceEEEEEEeccccccCCCCCchhhHHHHHHHHHhcC---CCEEE
Confidence 57889999999999998888765 599999998765432 2345677888888876 77653
No 26
>COG0482 TrmU Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Translation, ribosomal structure and biogenesis]
Probab=60.07 E-value=48 Score=32.22 Aligned_cols=56 Identities=20% Similarity=0.339 Sum_probs=44.9
Q ss_pred CCceEEEecCCCchHHHHHHHHHcCCCCeEEEEEEecC------CCChHHHHHHHHHHHHHhC
Q 019923 18 NPAKLIIDTDPGIDDSMTILMAFQTPELEILGLTTIFG------NVTTEDATRNALTLCEMAG 74 (334)
Q Consensus 18 ~~~~viiDtD~G~DD~~AL~~~l~~p~i~v~gIt~v~G------n~~~~~~~~na~~ll~~~g 74 (334)
.++||++=+=.|+|-.+|..++... ..+|+||+--.+ .+..++-.+.|.++.+.+|
T Consensus 2 ~~~kV~v~mSGGVDSSVaA~lLk~Q-GyeViGl~m~~~~~~~~~~C~s~~d~~da~~va~~LG 63 (356)
T COG0482 2 KKKKVLVGMSGGVDSSVAAYLLKEQ-GYEVIGLFMKNWDEDGGGGCCSEEDLRDAERVADQLG 63 (356)
T ss_pred CCcEEEEEccCCHHHHHHHHHHHHc-CCeEEEEEEEeeccCCCCcCCchhHHHHHHHHHHHhC
Confidence 4789999999999999987777665 799999996532 3566677778888888888
No 27
>PF01168 Ala_racemase_N: Alanine racemase, N-terminal domain; InterPro: IPR001608 Alanine racemase plays a role in providing the D-alanine required for cell wall biosynthesis by isomerising L-alanine to D-alanine. Proteins containing this domain are found in both prokaryotes and eukaryotes [,]. The molecular structure of alanine racemase from Bacillus stearothermophilus was determined by X-ray crystallography to a resolution of 1.9 A []. The alanine racemase monomer is composed of two domains, an eight-stranded alpha/beta barrel at the N terminus, and a C-terminal domain essentially composed of beta-strands. The pyridoxal 5'-phosphate (PLP) cofactor lies in and above the mouth of the alpha/beta barrel and is covalently linked via an aldimine linkage to a lysine residue, which is at the C terminus of the first beta-strand of the alpha/beta barrel. This domain is also found in the PROSC (proline synthetase co-transcribed bacterial homolog) family of proteins, which are not known to have alanine racemase activity.; PDB: 3KW3_A 1B54_A 1CT5_A 2ODO_B 2RJG_A 3B8V_D 2RJH_D 3B8T_D 3B8W_B 3B8U_A ....
Probab=57.49 E-value=46 Score=29.20 Aligned_cols=41 Identities=27% Similarity=0.477 Sum_probs=33.9
Q ss_pred CCceEEEecCCC-------chHHHHHHHHHc-CCCCeEEEEEEecCCCC
Q 019923 18 NPAKLIIDTDPG-------IDDSMTILMAFQ-TPELEILGLTTIFGNVT 58 (334)
Q Consensus 18 ~~~~viiDtD~G-------~DD~~AL~~~l~-~p~i~v~gIt~v~Gn~~ 58 (334)
.+.+|.|+.|+| .||+..++-.+. .|.+++.||.|-.|...
T Consensus 109 ~~~~v~l~vdtG~~R~G~~~~~~~~l~~~i~~~~~l~l~Gl~th~~~~d 157 (218)
T PF01168_consen 109 KPLKVHLKVDTGMGRLGVRPEELEELAEAIKALPNLRLEGLMTHFAHAD 157 (218)
T ss_dssp STEEEEEEBESSSSSSSBECHHHHHHHHHHHHTTTEEEEEEEEBGSSTT
T ss_pred CceEEEEeecccccccCCCHHHHHHHHHHHhcCCCceEeeEeccccccC
Confidence 567899999987 688888877776 78999999999877654
No 28
>PRK13509 transcriptional repressor UlaR; Provisional
Probab=56.04 E-value=50 Score=30.20 Aligned_cols=72 Identities=13% Similarity=0.088 Sum_probs=48.0
Q ss_pred cHHHHHHHHHHcCCCceEEEEecchhHHHHHHhhCcchHhccceEEEecCCCCCCCCCCccccccccCCHHHHHHHHHcC
Q 019923 121 NASEFLVDKVSEYPGEVSILALGPLTNLALAIKRDSSFASKVKNIVVLGGAFFALGNVNPAAEANIYGDPEAADVVFTSG 200 (334)
Q Consensus 121 ~a~~~i~~~~~~~p~~vtila~GpLTNlA~al~~~P~~~~~i~~iviMGG~~~~~GN~~~~aEfN~~~DPeAA~~Vl~s~ 200 (334)
.-+..|++.+... ++||++.+. ++|.+|..+|.+ ++++.||.+.. +.+.+..|. ++.+-+-.
T Consensus 103 sT~~~la~~L~~~--~ltVvTnsl--~ia~~l~~~~~~-----~v~l~GG~~~~--------~~~~~~G~~-~~~l~~~~ 164 (251)
T PRK13509 103 STAFLLGRELCGK--PVQIITNYL--PLANYLIDQEHD-----SVIIMGGQYNK--------SQSITLSPQ-GSENSLYA 164 (251)
T ss_pred HHHHHHHHHhCCC--CeEEEeCCH--HHHHHHHhCCCC-----EEEEECCeEcC--------CcceeECHH-HHHHHhCc
Confidence 3345566766543 488888776 777778777764 68999999852 345678886 45443335
Q ss_pred CcEEEEeccc
Q 019923 201 ANIAVVGINI 210 (334)
Q Consensus 201 ~~i~~v~ldv 210 (334)
.++.+++.+-
T Consensus 165 ~d~aFig~~g 174 (251)
T PRK13509 165 GHWMFTSGKG 174 (251)
T ss_pred CCEEEECCCc
Confidence 6777877653
No 29
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=49.87 E-value=45 Score=28.01 Aligned_cols=56 Identities=13% Similarity=0.251 Sum_probs=40.0
Q ss_pred chHHHHHHHHHcCCCCeEEEEEEecCCCChHHHHHHHHHHHHHhCCCCCCeeeCCCCCCCC
Q 019923 30 IDDSMTILMAFQTPELEILGLTTIFGNVTTEDATRNALTLCEMAGCPGVPVAEGSPEPLKG 90 (334)
Q Consensus 30 ~DD~~AL~~~l~~p~i~v~gIt~v~Gn~~~~~~~~na~~ll~~~g~~~IPV~~Ga~~pl~~ 90 (334)
.|++...+ + ..+++++||++..|- -..-+.-....|+..|..+|.|+.|...|...
T Consensus 52 p~e~v~aA--~-~~dv~vIgvSsl~g~--h~~l~~~lve~lre~G~~~i~v~~GGvip~~d 107 (143)
T COG2185 52 PEEAVRAA--V-EEDVDVIGVSSLDGG--HLTLVPGLVEALREAGVEDILVVVGGVIPPGD 107 (143)
T ss_pred HHHHHHHH--H-hcCCCEEEEEeccch--HHHHHHHHHHHHHHhCCcceEEeecCccCchh
Confidence 35555443 3 347999999998875 23345566777888899999999998877644
No 30
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=49.47 E-value=70 Score=25.06 Aligned_cols=65 Identities=14% Similarity=0.264 Sum_probs=42.6
Q ss_pred eEEEecCCCchHHHHHHHHHcCCCCeEEEEEEecCCCChHHHHHHHHHHHHHhCCCCCCeeeCCCCCCCCC
Q 019923 21 KLIIDTDPGIDDSMTILMAFQTPELEILGLTTIFGNVTTEDATRNALTLCEMAGCPGVPVAEGSPEPLKGG 91 (334)
Q Consensus 21 ~viiDtD~G~DD~~AL~~~l~~p~i~v~gIt~v~Gn~~~~~~~~na~~ll~~~g~~~IPV~~Ga~~pl~~~ 91 (334)
-++++.+...++.+..+. ..+.+++|+|+...+ .....+++.++.+..+. +++|..|-..+...+
T Consensus 30 v~~l~~~~~~~~~~~~i~---~~~pdiV~iS~~~~~--~~~~~~~~~~~~~~~p~-~~~ivvGG~~~t~~~ 94 (125)
T cd02065 30 VIDLGVDVPPEEIVEAAK---EEDADVVGLSALSTT--HMEAMKLVIEALKELGI-DIPVVVGGAHPTADP 94 (125)
T ss_pred EEEcCCCCCHHHHHHHHH---HcCCCEEEEecchHh--HHHHHHHHHHHHHhcCC-CCeEEEeCCcCCccc
Confidence 345666555555544332 346789999987766 33566777777777653 799998887766554
No 31
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=43.77 E-value=54 Score=27.01 Aligned_cols=46 Identities=11% Similarity=0.226 Sum_probs=34.2
Q ss_pred cCCCCeEEEEEEecCCCChHHHHHHHHHHHHHhCCCCCCeeeCCCCCC
Q 019923 41 QTPELEILGLTTIFGNVTTEDATRNALTLCEMAGCPGVPVAEGSPEPL 88 (334)
Q Consensus 41 ~~p~i~v~gIt~v~Gn~~~~~~~~na~~ll~~~g~~~IPV~~Ga~~pl 88 (334)
...+.+++|+|+..|... ...+.+...|+..|..++||..|-.-+.
T Consensus 47 ~~~~adiVglS~L~t~~~--~~~~~~~~~l~~~gl~~v~vivGG~~~i 92 (128)
T cd02072 47 IETDADAILVSSLYGHGE--IDCKGLREKCDEAGLKDILLYVGGNLVV 92 (128)
T ss_pred HHcCCCEEEEeccccCCH--HHHHHHHHHHHHCCCCCCeEEEECCCCC
Confidence 344789999998877643 3456777788888876899999986543
No 32
>PRK10681 DNA-binding transcriptional repressor DeoR; Provisional
Probab=42.42 E-value=1.1e+02 Score=27.94 Aligned_cols=71 Identities=14% Similarity=0.257 Sum_probs=48.2
Q ss_pred HHHHHHHHHcCCCceEEEEecchhHHHHHHhhCcchHhccceEEEecCCCCCCCCCCccccccccCCHHHHHHHHHcCCc
Q 019923 123 SEFLVDKVSEYPGEVSILALGPLTNLALAIKRDSSFASKVKNIVVLGGAFFALGNVNPAAEANIYGDPEAADVVFTSGAN 202 (334)
Q Consensus 123 ~~~i~~~~~~~p~~vtila~GpLTNlA~al~~~P~~~~~i~~iviMGG~~~~~GN~~~~aEfN~~~DPeAA~~Vl~s~~~ 202 (334)
.-.|.+.+... .++||++... ++|..|..+|++ ++++.||.+.. +.+.+..+.|.+.+=+-.+.
T Consensus 104 ~~~la~~L~~~-~~ltvvTnsl--~i~~~l~~~~~~-----~villGG~~~~--------~~~~~~G~~~~~~l~~~~~D 167 (252)
T PRK10681 104 TPWIIEAIDNE-LPFTAVCYSL--NTFLALQEKPHC-----RAILCGGEFHA--------SNAIFKPLDFQQTLDNICPD 167 (252)
T ss_pred HHHHHHhcCCC-CCeEEEECCH--HHHHHHhhCCCC-----EEEEECcEEec--------CcceeeCHHHHHHHHhhCCC
Confidence 44455666432 2488887643 356666666664 69999999952 34568888888777666778
Q ss_pred EEEEecc
Q 019923 203 IAVVGIN 209 (334)
Q Consensus 203 i~~v~ld 209 (334)
..+++.+
T Consensus 168 ~afig~~ 174 (252)
T PRK10681 168 IAFYSAA 174 (252)
T ss_pred EEEEeCc
Confidence 8888765
No 33
>PRK10411 DNA-binding transcriptional activator FucR; Provisional
Probab=42.36 E-value=1e+02 Score=27.94 Aligned_cols=72 Identities=7% Similarity=0.238 Sum_probs=47.3
Q ss_pred cHHHHHHHHHHcCCCceEEEEecchhHHHHHHhhCcchHhccceEEEecCCCCCCCCCCccccccccCCHHHHHHHHHcC
Q 019923 121 NASEFLVDKVSEYPGEVSILALGPLTNLALAIKRDSSFASKVKNIVVLGGAFFALGNVNPAAEANIYGDPEAADVVFTSG 200 (334)
Q Consensus 121 ~a~~~i~~~~~~~p~~vtila~GpLTNlA~al~~~P~~~~~i~~iviMGG~~~~~GN~~~~aEfN~~~DPeAA~~Vl~s~ 200 (334)
.-...|++.+... ++||++-.+ ++|..|...|++ ++++.||.+. .+.+....|.|.+.+=+-.
T Consensus 103 tT~~~l~~~L~~~--~ltVvTNs~--~ia~~l~~~~~~-----~vil~GG~~~--------~~~~~~~G~~a~~~l~~~~ 165 (240)
T PRK10411 103 STCWYLARQLPDI--NIQVFTNSH--PICQELGKRERI-----QLISSGGTLE--------RKYGCYVNPSLISQLKSLE 165 (240)
T ss_pred HHHHHHHHhhCCC--CeEEEeCCH--HHHHHHhcCCCC-----EEEEECCEEe--------CCCCceECHHHHHHHHhcC
Confidence 3344556666432 477777654 345556566663 5899999986 3455678899888876666
Q ss_pred CcEEEEecc
Q 019923 201 ANIAVVGIN 209 (334)
Q Consensus 201 ~~i~~v~ld 209 (334)
....+++.+
T Consensus 166 ~d~afis~~ 174 (240)
T PRK10411 166 IDLFIFSCE 174 (240)
T ss_pred CCEEEEece
Confidence 777777765
No 34
>PRK02628 nadE NAD synthetase; Reviewed
Probab=40.51 E-value=71 Score=33.84 Aligned_cols=57 Identities=30% Similarity=0.452 Sum_probs=46.3
Q ss_pred CCceEEEecCCCchHHHHHHHHHcC------CCCeEEEEEEecCCCChHHHHHHHHHHHHHhCC
Q 019923 18 NPAKLIIDTDPGIDDSMTILMAFQT------PELEILGLTTIFGNVTTEDATRNALTLCEMAGC 75 (334)
Q Consensus 18 ~~~~viiDtD~G~DD~~AL~~~l~~------p~i~v~gIt~v~Gn~~~~~~~~na~~ll~~~g~ 75 (334)
..++|+|---.|+|.+++++++... |..+|.||+. .|..+.+...+.+..+.+.+|.
T Consensus 360 ~~~~vvvglSGGiDSal~l~l~~~a~~~lg~~~~~v~~v~m-p~~~ss~~s~~~a~~la~~LGi 422 (679)
T PRK02628 360 GLKKVVIGISGGLDSTHALLVAAKAMDRLGLPRKNILAYTM-PGFATTDRTKNNAVALMKALGV 422 (679)
T ss_pred CCCeEEEECCCCHHHHHHHHHHHHHHHhhCCCcceEEEEEC-CCCCCCHHHHHHHHHHHHHhCC
Confidence 4679999999999999888777543 3578999977 6665667788899999999995
No 35
>COG1349 GlpR Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism]
Probab=37.95 E-value=1.5e+02 Score=27.19 Aligned_cols=75 Identities=15% Similarity=0.266 Sum_probs=52.6
Q ss_pred ccHHHHHHHHHHcCCCceEEEEecchhHHHHHHhhCcchHhccceEEEecCCCCCCCCCCccccccccCCHHHHHHHHHc
Q 019923 120 KNASEFLVDKVSEYPGEVSILALGPLTNLALAIKRDSSFASKVKNIVVLGGAFFALGNVNPAAEANIYGDPEAADVVFTS 199 (334)
Q Consensus 120 ~~a~~~i~~~~~~~p~~vtila~GpLTNlA~al~~~P~~~~~i~~iviMGG~~~~~GN~~~~aEfN~~~DPeAA~~Vl~s 199 (334)
.....++++.+...+. +||++-+. ++|..|...|.. .+++.||.+. .+.+.+..|.|.+.+=+-
T Consensus 100 GTT~~~la~~L~~~~~-ltviTNsl--~ia~~l~~~~~~-----~vi~~GG~~~--------~~~~~~~G~~a~~~l~~~ 163 (253)
T COG1349 100 GTTTLALARALPDDNN-LTVITNSL--NIAAALLEKPNI-----EVILLGGTVR--------KKSGSFVGPLAEEFLRQF 163 (253)
T ss_pred CcHHHHHHHHhCcCCC-eEEEeCCH--HHHHHHHhCCCC-----eEEEeCcEEE--------cCCCeEEcHHHHHHHHhC
Confidence 4556677777776543 88888775 456666666643 5789999986 345567888887777666
Q ss_pred CCcEEEEeccc
Q 019923 200 GANIAVVGINI 210 (334)
Q Consensus 200 ~~~i~~v~ldv 210 (334)
.++.-+++.+-
T Consensus 164 ~~d~aFig~~g 174 (253)
T COG1349 164 NFDKAFIGADG 174 (253)
T ss_pred cccEEEEeccc
Confidence 77888888764
No 36
>TIGR01849 PHB_depoly_PhaZ polyhydroxyalkanoate depolymerase, intracellular. This model represents an intracellular depolymerase for polyhydroxyalkanoate (PHA), a carbon and energy storing polyester that accumulates in granules in many bacterial species when carbon sources are abundant but other nutrients are limiting. This family is named for PHAs generally, rather than polyhydroxybutyrate (PHB) specificially as in Ralstonia eutropha H16, to avoid overcalling chemical specificity in other species. Note that this family lacks the classic GXSXG lipase motif and instead shows weak similarity to some
Probab=37.62 E-value=1.2e+02 Score=30.05 Aligned_cols=58 Identities=12% Similarity=0.255 Sum_probs=39.4
Q ss_pred ccHHHHHHHHHHcCCCceEEEE---ecchhHHHHHHhhCcchHhccceEEEecCCCCCCCC
Q 019923 120 KNASEFLVDKVSEYPGEVSILA---LGPLTNLALAIKRDSSFASKVKNIVVLGGAFFALGN 177 (334)
Q Consensus 120 ~~a~~~i~~~~~~~p~~vtila---~GpLTNlA~al~~~P~~~~~i~~iviMGG~~~~~GN 177 (334)
.+-++.|.+.++....++.+++ -|.++-.|.|+..+..-..+++.++.|||-++..-|
T Consensus 153 dDYi~~l~~~i~~~G~~v~l~GvCqgG~~~laa~Al~a~~~~p~~~~sltlm~~PID~~~~ 213 (406)
T TIGR01849 153 EDYIDYLIEFIRFLGPDIHVIAVCQPAVPVLAAVALMAENEPPAQPRSMTLMGGPIDARAS 213 (406)
T ss_pred HHHHHHHHHHHHHhCCCCcEEEEchhhHHHHHHHHHHHhcCCCCCcceEEEEecCccCCCC
Confidence 4556788888876533355544 366666677776665555579999999999986543
No 37
>cd00717 URO-D Uroporphyrinogen decarboxylase (URO-D) is a dimeric cytosolic enzyme that decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, without requiring any prosthetic groups or cofactors. This reaction is located at the branching point of the tetrapyrrole biosynthetic pathway, leading to the biosynthesis of heme, chlorophyll or bacteriochlorophyll. URO-D deficiency is responsible for the human genetic diseases familial porphyria cutanea tarda (fPCT) and hepatoerythropoietic porphyria (HEP).
Probab=35.37 E-value=2e+02 Score=27.28 Aligned_cols=26 Identities=23% Similarity=0.206 Sum_probs=17.3
Q ss_pred HcCCcEEEEeccccceeecCHHHHHHHH
Q 019923 198 TSGANIAVVGINITTQVKLTDADFLELR 225 (334)
Q Consensus 198 ~s~~~i~~v~ldvt~~~~~~~~~~~~l~ 225 (334)
++|....++.-+.. ..+++++++++.
T Consensus 188 eaGad~i~i~d~~~--~~lsp~~f~ef~ 213 (335)
T cd00717 188 EAGAQAVQIFDSWA--GALSPEDFEEFV 213 (335)
T ss_pred HhCCCEEEEeCccc--ccCCHHHHHHHH
Confidence 45777766654332 368999998875
No 38
>PRK10906 DNA-binding transcriptional repressor GlpR; Provisional
Probab=35.02 E-value=1.9e+02 Score=26.51 Aligned_cols=72 Identities=15% Similarity=0.246 Sum_probs=47.9
Q ss_pred HHHHHHHHHHcCCCceEEEEecchhHHHHHHhhCcchHhccceEEEecCCCCCCCCCCccccccccCCHHHHHHHHHcCC
Q 019923 122 ASEFLVDKVSEYPGEVSILALGPLTNLALAIKRDSSFASKVKNIVVLGGAFFALGNVNPAAEANIYGDPEAADVVFTSGA 201 (334)
Q Consensus 122 a~~~i~~~~~~~p~~vtila~GpLTNlA~al~~~P~~~~~i~~iviMGG~~~~~GN~~~~aEfN~~~DPeAA~~Vl~s~~ 201 (334)
-...+.+.+... .++||++-.. ++|..|...|++ ++++.||.+.. +...+..|.|.+.+=+-..
T Consensus 102 T~~~la~~L~~~-~~ltVvTNsl--~ia~~l~~~~~~-----~villGG~~~~--------~~~~~~G~~a~~~l~~~~~ 165 (252)
T PRK10906 102 TPEAVAHALLNH-SNLRIVTNNL--NVANTLMAKEDF-----RIILAGGELRS--------RDGGIIGEATLDFISQFRL 165 (252)
T ss_pred HHHHHHHHhcCC-CCcEEEECcH--HHHHHHhhCCCC-----EEEEECCEEec--------CCCccCCHHHHHHHHhccC
Confidence 344555666432 2477777553 355666666663 58999999862 3455888999888877677
Q ss_pred cEEEEecc
Q 019923 202 NIAVVGIN 209 (334)
Q Consensus 202 ~i~~v~ld 209 (334)
++.+++.+
T Consensus 166 d~afi~~~ 173 (252)
T PRK10906 166 DFGILGIS 173 (252)
T ss_pred CEEEEcCC
Confidence 88887765
No 39
>TIGR00044 pyridoxal phosphate enzyme, YggS family. Members of this protein family include YggS from Escherichia coli and YBL036C, an uncharacterized pyridoxal protein of Saccharomyces cerevisiae.
Probab=34.62 E-value=1.7e+02 Score=26.21 Aligned_cols=40 Identities=15% Similarity=0.336 Sum_probs=29.9
Q ss_pred CceEEEecCCC---------chHHHHHHHHHc-CCCCeEEEEEEecCCCC
Q 019923 19 PAKLIIDTDPG---------IDDSMTILMAFQ-TPELEILGLTTIFGNVT 58 (334)
Q Consensus 19 ~~~viiDtD~G---------~DD~~AL~~~l~-~p~i~v~gIt~v~Gn~~ 58 (334)
+.+|+|..|+| .+++..++-.+. .|.+++.|+-|-.+...
T Consensus 120 ~~~V~l~vdtg~gm~R~G~~~~e~~~~~~~i~~~~~l~l~Gl~th~~~~~ 169 (229)
T TIGR00044 120 PLNVLLQINISDEESKSGIQPEELLELAIQIEELKHLKLRGLMTIGAPTD 169 (229)
T ss_pred CceEEEEEECCCCCCCCCCCHHHHHHHHHHHhcCCCCeEEEEEEeCCCCC
Confidence 45778877773 467887776665 68899999988877654
No 40
>cd03307 Mta_CmuA_like MtaA_CmuA_like family. MtaA/CmuA, also MtsA, or methyltransferase 2 (MT2) MT2-A and MT2-M isozymes, are methylcobamide:Coenzyme M methyltransferases, which play a role in metabolic pathways of methane formation from various substrates, such as methylated amines and methanol. Coenzyme M, 2-mercaptoethylsulfonate or CoM, is methylated during methanogenesis in a reaction catalyzed by three proteins. A methyltransferase methylates the corrinoid cofactor, which is bound to a second polypeptide, a corrinoid protein. The methylated corrinoid protein then serves as a substrate for MT2-A and related enzymes, which methylate CoM.
Probab=34.24 E-value=1.6e+02 Score=27.84 Aligned_cols=29 Identities=14% Similarity=0.232 Sum_probs=20.4
Q ss_pred HHcCCcEEEEeccccceeecCHHHHHHHH
Q 019923 197 FTSGANIAVVGINITTQVKLTDADFLELR 225 (334)
Q Consensus 197 l~s~~~i~~v~ldvt~~~~~~~~~~~~l~ 225 (334)
+++|.....+.-.......+++++++++.
T Consensus 181 ~eaGad~i~i~d~~a~~~~isp~~f~e~~ 209 (326)
T cd03307 181 LEAGADIITIADPTASPELISPEFYEEFA 209 (326)
T ss_pred HHcCCCEEEecCCCccccccCHHHHHHHH
Confidence 44577777665555566678999998764
No 41
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=33.51 E-value=19 Score=34.73 Aligned_cols=24 Identities=42% Similarity=0.725 Sum_probs=16.9
Q ss_pred HHHHHcCC-CceEEEEecchhHHHH
Q 019923 127 VDKVSEYP-GEVSILALGPLTNLAL 150 (334)
Q Consensus 127 ~~~~~~~p-~~vtila~GpLTNlA~ 150 (334)
.+.+..-| +.++|+|+||||.=++
T Consensus 120 reEvt~iP~dg~~vIATGPLTs~~L 144 (439)
T COG1206 120 REEVTEIPPDGITVIATGPLTSDAL 144 (439)
T ss_pred ccccccCCCCCcEEEecCCCCCHHH
Confidence 34444444 7799999999996543
No 42
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=32.68 E-value=82 Score=26.03 Aligned_cols=54 Identities=13% Similarity=0.209 Sum_probs=35.6
Q ss_pred chHHHHHHHHHcCCCCeEEEEEEecCCCChHHHHHHHHHHHHHhCCCCCCeeeCCCCCC
Q 019923 30 IDDSMTILMAFQTPELEILGLTTIFGNVTTEDATRNALTLCEMAGCPGVPVAEGSPEPL 88 (334)
Q Consensus 30 ~DD~~AL~~~l~~p~i~v~gIt~v~Gn~~~~~~~~na~~ll~~~g~~~IPV~~Ga~~pl 88 (334)
.++..+.+ ..-+.+++++|+..+. ....+++....|+..|..+++|..|-.-+.
T Consensus 43 ~e~i~~~a---~~~~~d~V~lS~~~~~--~~~~~~~~~~~L~~~~~~~~~i~vGG~~~~ 96 (137)
T PRK02261 43 QEEFIDAA---IETDADAILVSSLYGH--GEIDCRGLREKCIEAGLGDILLYVGGNLVV 96 (137)
T ss_pred HHHHHHHH---HHcCCCEEEEcCcccc--CHHHHHHHHHHHHhcCCCCCeEEEECCCCC
Confidence 44544433 3335789999887763 344556677777777777899988876544
No 43
>COG0489 Mrp ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=31.66 E-value=1.2e+02 Score=27.94 Aligned_cols=56 Identities=25% Similarity=0.366 Sum_probs=33.2
Q ss_pred CceEEEecCCCchHHHHHHHHHcCCCCeEEEEEEecCCCChHHHHHHHHHHHHHhCCCCCCee
Q 019923 19 PAKLIIDTDPGIDDSMTILMAFQTPELEILGLTTIFGNVTTEDATRNALTLCEMAGCPGVPVA 81 (334)
Q Consensus 19 ~~~viiDtD~G~DD~~AL~~~l~~p~i~v~gIt~v~Gn~~~~~~~~na~~ll~~~g~~~IPV~ 81 (334)
-..|||||=+|..|.-+-++.-... -++ |+++.|.+... -+++.++++.+.++||-
T Consensus 167 ~D~vIID~PP~~g~~d~~i~~~~~~--g~v-iVt~p~~~~~~----~v~ka~~~~~~~~~~vl 222 (265)
T COG0489 167 YDYVIIDTPPGTGDADATVLQRIPD--GVV-IVTTPGKTALE----DVKKAIDMLEKAGIPVL 222 (265)
T ss_pred CCEEEEeCCCCchHHHHHHHhccCC--eEE-EEeCCccchHH----HHHHHHHHHHhcCCceE
Confidence 4689999999998888776665443 122 33456665543 33444444444445543
No 44
>cd01993 Alpha_ANH_like_II This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=31.11 E-value=1.6e+02 Score=24.79 Aligned_cols=55 Identities=16% Similarity=0.184 Sum_probs=34.8
Q ss_pred eEEEecCCCchHHHHHHHHHc-CC----CCeEEEEEEecCCC-ChHHHHHHHHHHHHHhCC
Q 019923 21 KLIIDTDPGIDDSMTILMAFQ-TP----ELEILGLTTIFGNV-TTEDATRNALTLCEMAGC 75 (334)
Q Consensus 21 ~viiDtD~G~DD~~AL~~~l~-~p----~i~v~gIt~v~Gn~-~~~~~~~na~~ll~~~g~ 75 (334)
||++=.-+|.|-...+.++.+ .+ ++++.+++..+|.. ..+.....+.++.+.+|.
T Consensus 1 ~v~v~~SGG~DS~~ll~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~i 61 (185)
T cd01993 1 RILVALSGGKDSLVLLHVLKKLQRRYPYGFELEALTVDEGIPGYRDESLEVVERLAEELGI 61 (185)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHhhcCCCeEEEEEEEECCCCCCcHHHHHHHHHHHHHcCC
Confidence 456666778865544433332 11 57999999888854 344556677777777763
No 45
>smart00870 Asparaginase Asparaginase, which is found in various plant, animal and bacterial cells, catalyses the deamination of asparagine to yield aspartic acid and an ammonium ion, resulting in a depletion of free circulatory asparagine in plasma PUBMED:3026924. The enzyme is effective in the treatment of human malignant lymphomas, which have a diminished capacity to produce asparagine synthetase: in order to survive, such cells absorb asparagine from blood plasma PUBMED:2407723, PUBMED:3379033 - if Asn levels have been depleted by injection of asparaginase, the lymphoma cells die.
Probab=31.02 E-value=1.2e+02 Score=28.82 Aligned_cols=62 Identities=15% Similarity=0.102 Sum_probs=40.9
Q ss_pred CCCchHHHHHHHHHcC--CCCeEEEEEEecCCCChHHHHHHHHHHHHHhCCCCCC-eeeCCCCCCCCC
Q 019923 27 DPGIDDSMTILMAFQT--PELEILGLTTIFGNVTTEDATRNALTLCEMAGCPGVP-VAEGSPEPLKGG 91 (334)
Q Consensus 27 D~G~DD~~AL~~~l~~--p~i~v~gIt~v~Gn~~~~~~~~na~~ll~~~g~~~IP-V~~Ga~~pl~~~ 91 (334)
|..++|.+.|+-.+.. ..=+.-||.+++|.-+++.++.-..-+++. .+.| |.-|+.+|+...
T Consensus 56 ~~t~~~w~~la~~i~~~~~~~~~dG~VVtHGTDTmeeTA~~Ls~~l~~---l~kPVVlTGa~rp~~~~ 120 (323)
T smart00870 56 NMTPADWLKLAKRINEALADDGYDGVVVTHGTDTLEETAYFLSLTLDS---LDKPVVLTGAMRPATAL 120 (323)
T ss_pred cCCHHHHHHHHHHHHHHhccCCCCEEEEecCCccHHHHHHHHHHHhhc---CCCCEEEECCCCCCCCC
Confidence 3567888888776642 112456999999988887655443334432 2578 568999998643
No 46
>cd00553 NAD_synthase NAD+ synthase is a homodimer, which catalyzes the final step in de novo nicotinamide adenine dinucleotide (NAD+) biosynthesis, an amide transfer from either ammonia or glutamine to nicotinic acid adenine dinucleotide (NaAD). The conversion of NaAD to NAD+ occurs via an NAD-adenylate intermediate and requires ATP and Mg2+. The intemediate is subsequently cleaved into NAD+ and AMP. In many prokaryotes, such as E. coli , NAD synthetase consists of a single domain and is strictly ammonia dependent. In contrast, eukaryotes and other prokaryotes have an additional N-terminal amidohydrolase domain that prefer glutamine, Interestingly, NAD+ synthases in these prokaryotes, can also utilize ammonia as an amide source .
Probab=30.91 E-value=1.6e+02 Score=26.65 Aligned_cols=57 Identities=19% Similarity=0.266 Sum_probs=43.5
Q ss_pred CCceEEEecCCCchHHHHHHHHHcC-CCCeEEEEEEecCCCChHHHHHHHHHHHHHhCC
Q 019923 18 NPAKLIIDTDPGIDDSMTILMAFQT-PELEILGLTTIFGNVTTEDATRNALTLCEMAGC 75 (334)
Q Consensus 18 ~~~~viiDtD~G~DD~~AL~~~l~~-p~i~v~gIt~v~Gn~~~~~~~~na~~ll~~~g~ 75 (334)
..++|++=.-.|+|.++.+.++... +..++.+++.-.+..+ ......++.+.+.+|.
T Consensus 22 ~~~~vvv~lSGGiDSs~~a~la~~~~~~~~v~~~~~~~~~~~-~~~~~~a~~~a~~lgi 79 (248)
T cd00553 22 GFKGVVLGLSGGIDSALVAALAVRALGRENVLALFMPSRYSS-EETREDAKELAEALGI 79 (248)
T ss_pred CCCCEEEeCCCcHHHHHHHHHHHHHhCcccEEEEECCCCCCC-HHHHHHHHHHHHHhCC
Confidence 4578999999999999877777653 2368899987777544 4566788999999884
No 47
>PF01171 ATP_bind_3: PP-loop family; InterPro: IPR011063 This entry represents the PP-loop motif superfamily [,]. The PP-loop motif appears to be a modified version of the P-loop of nucleotide binding domain that is involved in phosphate binding []. Named PP-motif, since it appears to be a part of a previously uncharacterised ATP pyrophophatase domain. ATP sulfurylases, Escherichia coli NtrL, and Bacillus subtilis OutB consist of this domain alone. In other proteins, the pyrophosphatase domain is associated with amidotransferase domains (type I or type II), a putative citrulline-aspartate ligase domain or a nitrilase/amidase domain.; PDB: 3A2K_A 2E89_B 2E21_D 1WY5_B 1NI5_A.
Probab=30.06 E-value=3e+02 Score=23.40 Aligned_cols=57 Identities=18% Similarity=0.414 Sum_probs=34.2
Q ss_pred EEEecCCCchHHHHHHHHHc----CCCCeEEEEEEecCCC-ChHHHHHHHHHHHHHhCCCCCCeee
Q 019923 22 LIIDTDPGIDDSMTILMAFQ----TPELEILGLTTIFGNV-TTEDATRNALTLCEMAGCPGVPVAE 82 (334)
Q Consensus 22 viiDtD~G~DD~~AL~~~l~----~p~i~v~gIt~v~Gn~-~~~~~~~na~~ll~~~g~~~IPV~~ 82 (334)
|++=.=+|. |.++|+++|. ...+++.+|++.+|-. ......+.+.++++.+| ||.+.
T Consensus 2 i~va~SGG~-DS~~Ll~~l~~~~~~~~~~~~~~~vdh~~~~~s~~~~~~v~~~~~~~~---i~~~~ 63 (182)
T PF01171_consen 2 ILVAVSGGK-DSMALLHLLKELRRRNGIKLIAVHVDHGLREESDEEAEFVEEICEQLG---IPLYI 63 (182)
T ss_dssp EEEE--SSH-HHHHHHHHHHHHHTTTTTEEEEEEEE-STSCCHHHHHHHHHHHHHHTT----EEEE
T ss_pred EEEEEcCCH-HHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchhHHHHHHHHHhcC---CceEE
Confidence 344444555 6888888875 3357999999888854 33444556666666655 67654
No 48
>cd06820 PLPDE_III_LS_D-TA_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Low Specificity D-Threonine Aldolase-like. This subfamily is composed of uncharacterized bacterial proteins with similarity to low specificity D-threonine aldolase (D-TA), which is a fold type III PLP-dependent enzyme that catalyzes the interconversion between D-threonine/D-allo-threonine and glycine plus acetaldehyde. Both PLP and divalent cations (eg. Mn2+) are required for catalytic activity. Low specificity D-TAs show similarity to bacterial alanine racemase (AR), which contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Based on its similarity to AR, it is possible that low specificity D-TAs also form dimers in solution. Experimental data show that the monomeric form of low specificity D-TAs exh
Probab=30.00 E-value=2.1e+02 Score=27.22 Aligned_cols=41 Identities=24% Similarity=0.520 Sum_probs=31.5
Q ss_pred CCceEEEecCCC-------c-hHHHHHHHHHc-CCCCeEEEEEEecCCCC
Q 019923 18 NPAKLIIDTDPG-------I-DDSMTILMAFQ-TPELEILGLTTIFGNVT 58 (334)
Q Consensus 18 ~~~~viiDtD~G-------~-DD~~AL~~~l~-~p~i~v~gIt~v~Gn~~ 58 (334)
.+.+|+|+.|+| . +++.+++-.+. .|.+++.||.+-.|...
T Consensus 120 ~~~~V~l~vd~G~~R~Gv~~~~~~~~l~~~i~~~~~l~l~Gi~~h~g~~~ 169 (353)
T cd06820 120 RPLEVLVEVDSGMNRCGVQTPEDAVALARAIASAPGLRFRGIFTYPGHSY 169 (353)
T ss_pred CeeEEEEEECCCCCcCCCCChHHHHHHHHHHHhCCCcEEEEEEecCCccC
Confidence 356899999986 3 67777776655 68899999998877653
No 49
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=29.88 E-value=94 Score=25.54 Aligned_cols=44 Identities=16% Similarity=0.308 Sum_probs=28.9
Q ss_pred CCCCeEEEEEEecCCCChHHHHHHHHHHHHHhCCCCCCeeeCCCCC
Q 019923 42 TPELEILGLTTIFGNVTTEDATRNALTLCEMAGCPGVPVAEGSPEP 87 (334)
Q Consensus 42 ~p~i~v~gIt~v~Gn~~~~~~~~na~~ll~~~g~~~IPV~~Ga~~p 87 (334)
..+.++++|++..+. ......-..+.|+..|..+++|+.|-..|
T Consensus 51 e~~adii~iSsl~~~--~~~~~~~~~~~L~~~g~~~i~vivGG~~~ 94 (132)
T TIGR00640 51 EADVHVVGVSSLAGG--HLTLVPALRKELDKLGRPDILVVVGGVIP 94 (132)
T ss_pred HcCCCEEEEcCchhh--hHHHHHHHHHHHHhcCCCCCEEEEeCCCC
Confidence 347899999876654 22224445555666676689999986555
No 50
>PRK14665 mnmA tRNA-specific 2-thiouridylase MnmA; Provisional
Probab=29.56 E-value=3e+02 Score=26.78 Aligned_cols=57 Identities=19% Similarity=0.362 Sum_probs=41.0
Q ss_pred CCceEEEecCCCchHHHHHHHHHcCCCCeEEEEEEecCCCC-hHHHHHHHHHHHHHhCC
Q 019923 18 NPAKLIIDTDPGIDDSMTILMAFQTPELEILGLTTIFGNVT-TEDATRNALTLCEMAGC 75 (334)
Q Consensus 18 ~~~~viiDtD~G~DD~~AL~~~l~~p~i~v~gIt~v~Gn~~-~~~~~~na~~ll~~~g~ 75 (334)
+..+|++=.-.|+|-++++.++... ..+|.||+...++.. .....+.++++.+.+|.
T Consensus 4 ~~~kVlValSGGVDSsvaa~LL~~~-G~~V~~v~~~~~~~~~~~~d~~~a~~va~~LgI 61 (360)
T PRK14665 4 KNKRVLLGMSGGTDSSVAAMLLLEA-GYEVTGVTFRFYEFNGSTEYLEDARALAERLGI 61 (360)
T ss_pred CCCEEEEEEcCCHHHHHHHHHHHHc-CCeEEEEEEecCCCCCChHHHHHHHHHHHHhCC
Confidence 3468999999999877776666554 589999988765432 23446678888888773
No 51
>PRK04183 glutamyl-tRNA(Gln) amidotransferase subunit D; Validated
Probab=29.23 E-value=94 Score=30.95 Aligned_cols=63 Identities=14% Similarity=0.040 Sum_probs=43.0
Q ss_pred ecCCCchHHHHHHHHHcCC-CCeEEEEEEecCCCChHHHHHHHHHHHHHhCCCCCC-eeeCCCCCCCCC
Q 019923 25 DTDPGIDDSMTILMAFQTP-ELEILGLTTIFGNVTTEDATRNALTLCEMAGCPGVP-VAEGSPEPLKGG 91 (334)
Q Consensus 25 DtD~G~DD~~AL~~~l~~p-~i~v~gIt~v~Gn~~~~~~~~na~~ll~~~g~~~IP-V~~Ga~~pl~~~ 91 (334)
..|+...|.+.|+-.++.- +=..-||.++||.-+++.++.-..-++ + .+.| |.-|+.+|...+
T Consensus 130 S~~mtp~~W~~La~~I~~~~~~~~dGvVVtHGTDTM~yTA~aLs~~l---~-~~kPVVlTGAqrp~~~~ 194 (419)
T PRK04183 130 SENMTPEYWVEIAEAVYEEIKNGADGVVVAHGTDTMHYTAAALSFML---K-TPVPIVFVGAQRSSDRP 194 (419)
T ss_pred chhCCHHHHHHHHHHHHHHhhccCCeEEEecCCchHHHHHHHHHHhc---C-CCCCEEEeCCCCCCCCC
Confidence 4456688888888876531 114789999999888776543322222 3 5789 569999998765
No 52
>PRK10696 tRNA 2-thiocytidine biosynthesis protein TtcA; Provisional
Probab=29.08 E-value=2.1e+02 Score=26.10 Aligned_cols=59 Identities=17% Similarity=0.176 Sum_probs=39.5
Q ss_pred CCCceEEEecCCCchHHHHHHHHHc------CCCCeEEEEEEecCCCChHHHHHHHHHHHHHhCCCCCCee
Q 019923 17 TNPAKLIIDTDPGIDDSMTILMAFQ------TPELEILGLTTIFGNVTTEDATRNALTLCEMAGCPGVPVA 81 (334)
Q Consensus 17 ~~~~~viiDtD~G~DD~~AL~~~l~------~p~i~v~gIt~v~Gn~~~~~~~~na~~ll~~~g~~~IPV~ 81 (334)
....+|++=.-+|.| .++|+++|. ...++|.+|+..+|....+. +.+.++++.+| ||..
T Consensus 27 ~~~~kilVa~SGG~D-S~~LL~ll~~l~~~~~~~~~l~av~vd~g~~~~~~--~~~~~~~~~lg---I~~~ 91 (258)
T PRK10696 27 EEGDRVMVCLSGGKD-SYTLLDILLNLQKRAPINFELVAVNLDQKQPGFPE--HVLPEYLESLG---VPYH 91 (258)
T ss_pred CCCCEEEEEecCCHH-HHHHHHHHHHHHHhCCCCeEEEEEEecCCCCCCCH--HHHHHHHHHhC---CCEE
Confidence 345688888888885 778887773 23579999998888543221 23456666666 5544
No 53
>COG1927 Mtd Coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase [Energy production and conversion]
Probab=28.47 E-value=2.3e+02 Score=25.59 Aligned_cols=73 Identities=16% Similarity=0.251 Sum_probs=43.9
Q ss_pred HHHHHHHHHHcCC-CceEEEEecchhHHHHHHhhCcchHhccc-eEEEecCCCC-CCCCCCccccccccCCHHHHHHHHH
Q 019923 122 ASEFLVDKVSEYP-GEVSILALGPLTNLALAIKRDSSFASKVK-NIVVLGGAFF-ALGNVNPAAEANIYGDPEAADVVFT 198 (334)
Q Consensus 122 a~~~i~~~~~~~p-~~vtila~GpLTNlA~al~~~P~~~~~i~-~iviMGG~~~-~~GN~~~~aEfN~~~DPeAA~~Vl~ 198 (334)
-++.+.+.....+ =++.++.+|.=.+=...=.-.++..+..+ .+++|+|.-. .+| |.+|+.+|.
T Consensus 18 v~dlllDErAdRedi~vrVvgsgaKM~Pe~veaav~~~~e~~~pDfvi~isPNpaaPG-------------P~kARE~l~ 84 (277)
T COG1927 18 VVDLLLDERADREDIEVRVVGSGAKMDPECVEAAVTEMLEEFNPDFVIYISPNPAAPG-------------PKKAREILS 84 (277)
T ss_pred HHHHHHHhhcccCCceEEEeccccccChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCC-------------chHHHHHHh
Confidence 3555555544333 36778888865555533333344555555 6778777643 233 788888886
Q ss_pred -cCCcEEEEe
Q 019923 199 -SGANIAVVG 207 (334)
Q Consensus 199 -s~~~i~~v~ 207 (334)
|++|..+++
T Consensus 85 ~s~~Paiiig 94 (277)
T COG1927 85 DSDVPAIIIG 94 (277)
T ss_pred hcCCCEEEec
Confidence 677776664
No 54
>cd06819 PLPDE_III_LS_D-TA Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Low Specificity D-Threonine Aldolase. Low specificity D-threonine aldolase (Low specificity D-TA, EC 4.3.1.18), encoded by dtaAS gene from Arthrobacter sp. strain DK-38, is the prototype of this subfamily. Low specificity D-TAs are fold type III PLP-dependent enzymes that catalyze the interconversion between D-threonine/D-allo-threonine and glycine plus acetaldehyde. Both PLP and divalent cations (eg. Mn2+) are required for catalytic activity. Members of this subfamily show similarity to bacterial alanine racemase (AR), which contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Based on its similarity to AR, it is possible that low specificity D-TAs also form dimers in solution. Experimental data show that t
Probab=28.38 E-value=3.5e+02 Score=25.72 Aligned_cols=39 Identities=18% Similarity=0.468 Sum_probs=27.8
Q ss_pred CCceEEEecCCC-----c---hHHHHHHHHHc-CCCCeEEEEEEecCC
Q 019923 18 NPAKLIIDTDPG-----I---DDSMTILMAFQ-TPELEILGLTTIFGN 56 (334)
Q Consensus 18 ~~~~viiDtD~G-----~---DD~~AL~~~l~-~p~i~v~gIt~v~Gn 56 (334)
.+.+|+|+.|+| + +++.+++-.+. .|.+++.||.+-.|.
T Consensus 124 ~~~~V~l~vd~G~~R~Gv~~~~~~~~l~~~i~~~~~l~l~Gi~~y~G~ 171 (358)
T cd06819 124 VRLDVLVEIDVGQGRCGVPPGEAALALARTIAALPGLRFAGLQAYHGH 171 (358)
T ss_pred CceEEEEEECCCCCcCCCCChHHHHHHHHHHHhCCCceEeEEEeeCch
Confidence 346899999974 4 35777765544 678999999775553
No 55
>PRK10434 srlR DNA-bindng transcriptional repressor SrlR; Provisional
Probab=28.28 E-value=2.5e+02 Score=25.69 Aligned_cols=71 Identities=13% Similarity=0.218 Sum_probs=42.8
Q ss_pred HHHHHHHHcCCCceEEEEecchhHHHHHHhhCcchHhccceEEEecCCCCCCCCCCccccccccCCHHHHHHHHHcCCcE
Q 019923 124 EFLVDKVSEYPGEVSILALGPLTNLALAIKRDSSFASKVKNIVVLGGAFFALGNVNPAAEANIYGDPEAADVVFTSGANI 203 (334)
Q Consensus 124 ~~i~~~~~~~p~~vtila~GpLTNlA~al~~~P~~~~~i~~iviMGG~~~~~GN~~~~aEfN~~~DPeAA~~Vl~s~~~i 203 (334)
-.|++.+...+ ++||++... ++|.+|...+. .+ ++++.||.+.. +.+....|.|.+.+=+-...+
T Consensus 104 ~~la~~L~~~~-~ltVvTnsl--~ia~~l~~~~~---~~-~v~l~GG~~~~--------~~~~~~G~~a~~~l~~~~~D~ 168 (256)
T PRK10434 104 LQMVPLLSRFN-NITVMTNSL--HIVNALSELDN---EQ-TILMPGGTFRK--------KSASFHGQLAENAFEHFTFDK 168 (256)
T ss_pred HHHHHHhccCC-CeEEEECCH--HHHHHHhhCCC---CC-EEEEECCEEeC--------CCCeEECHHHHHHHHhCcCCE
Confidence 34455554332 366666553 23344433222 12 69999999862 345688899988776656778
Q ss_pred EEEecc
Q 019923 204 AVVGIN 209 (334)
Q Consensus 204 ~~v~ld 209 (334)
.+++.+
T Consensus 169 afi~~~ 174 (256)
T PRK10434 169 LFIGTD 174 (256)
T ss_pred EEEcCc
Confidence 887765
No 56
>PRK12342 hypothetical protein; Provisional
Probab=27.82 E-value=4e+02 Score=24.56 Aligned_cols=75 Identities=15% Similarity=0.189 Sum_probs=47.6
Q ss_pred CCCCCccHHHHHHHHHHcCCCceEEEEecchh----HH-HHHHhhCcchHhccceEEEe-cCCCCCCCCCCccccccccC
Q 019923 115 AKKCDKNASEFLVDKVSEYPGEVSILALGPLT----NL-ALAIKRDSSFASKVKNIVVL-GGAFFALGNVNPAAEANIYG 188 (334)
Q Consensus 115 ~~~~~~~a~~~i~~~~~~~p~~vtila~GpLT----Nl-A~al~~~P~~~~~i~~iviM-GG~~~~~GN~~~~aEfN~~~ 188 (334)
..|.+..|+++=+++- ++.++|+++++||-. .| -.+|.+-.+ +.|.. ...+. ..
T Consensus 33 iNp~D~~AlE~AlrLk-~~g~~Vtvls~Gp~~a~~~~l~r~alamGaD------~avli~d~~~~-------------g~ 92 (254)
T PRK12342 33 ISQFDLNAIEAASQLA-TDGDEIAALTVGGSLLQNSKVRKDVLSRGPH------SLYLVQDAQLE-------------HA 92 (254)
T ss_pred CChhhHHHHHHHHHHh-hcCCEEEEEEeCCChHhHHHHHHHHHHcCCC------EEEEEecCccC-------------CC
Confidence 3456788888777765 677899999999954 22 224444333 44443 22221 25
Q ss_pred CHHHHHHHHHc-----CCcEEEEecc
Q 019923 189 DPEAADVVFTS-----GANIAVVGIN 209 (334)
Q Consensus 189 DPeAA~~Vl~s-----~~~i~~v~ld 209 (334)
|+.|...+|.. +..+++++-.
T Consensus 93 D~~ata~~La~~i~~~~~DLVl~G~~ 118 (254)
T PRK12342 93 LPLDTAKALAAAIEKIGFDLLLFGEG 118 (254)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEcCC
Confidence 89988888875 4567777743
No 57
>PF09078 CheY-binding: CheY binding; InterPro: IPR015162 The CheY binding domain is found in the response regulator histidine kinase CheA. It adopts a secondary structure consisting of an open-face beta/alpha sandwich, with four antiparallel beta-strands and two alpha-helices. It binds to a corresponding domain on CheY, with subsequent phosphorylation of the CheY Asp57 residue, and activation of CheY, which then affects flagellar rotation []. ; PDB: 1FWP_A 1EAY_C 1A0O_D 1FFG_B 1FFS_B 1FFW_D.
Probab=27.37 E-value=52 Score=23.80 Aligned_cols=23 Identities=13% Similarity=0.264 Sum_probs=17.5
Q ss_pred CCceEEEecCCCchHHHHHHHHH
Q 019923 18 NPAKLIIDTDPGIDDSMTILMAF 40 (334)
Q Consensus 18 ~~~~viiDtD~G~DD~~AL~~~l 40 (334)
..--+|++|+.+.||..|++-..
T Consensus 34 ~~l~~~L~T~~s~DDI~AV~CFV 56 (65)
T PF09078_consen 34 DSLEVWLETSVSADDIIAVCCFV 56 (65)
T ss_dssp SEEEEEE-STSSHHHHHHHHTTT
T ss_pred CeEEEEECCCCChhhEEEEEEEE
Confidence 34579999999999999986443
No 58
>PRK09461 ansA cytoplasmic asparaginase I; Provisional
Probab=27.34 E-value=1.3e+02 Score=28.96 Aligned_cols=62 Identities=21% Similarity=0.173 Sum_probs=41.1
Q ss_pred CCCchHHHHHHHHHcCCCCeEEEEEEecCCCChHHHHHHHHHHHHHhCCCCCC-eeeCCCCCCCCC
Q 019923 27 DPGIDDSMTILMAFQTPELEILGLTTIFGNVTTEDATRNALTLCEMAGCPGVP-VAEGSPEPLKGG 91 (334)
Q Consensus 27 D~G~DD~~AL~~~l~~p~i~v~gIt~v~Gn~~~~~~~~na~~ll~~~g~~~IP-V~~Ga~~pl~~~ 91 (334)
|....|.+.|+-.+..---+.-||.+++|.-+++.++....-+++ ..+.| |.-|+.+|+...
T Consensus 62 ~mt~~~w~~la~~I~~~~~~~dG~VVtHGTDTmeeTA~~L~~~l~---~~~kPVVlTGAmrP~~~~ 124 (335)
T PRK09461 62 DMTPEDWQHIADDIKANYDDYDGFVILHGTDTMAYTASALSFMLE---NLGKPVIVTGSQIPLAEL 124 (335)
T ss_pred cCCHHHHHHHHHHHHHHhccCCeEEEeeccchHHHHHHHHHHHHh---CCCCCEEEeCCCCCCCCC
Confidence 345778888887775321257899999998777765433322332 23678 568999999754
No 59
>PRK13980 NAD synthetase; Provisional
Probab=26.75 E-value=2.8e+02 Score=25.49 Aligned_cols=57 Identities=16% Similarity=0.222 Sum_probs=42.8
Q ss_pred CCceEEEecCCCchHHHHHHHHHcC-CCCeEEEEEEecCCCChHHHHHHHHHHHHHhCC
Q 019923 18 NPAKLIIDTDPGIDDSMTILMAFQT-PELEILGLTTIFGNVTTEDATRNALTLCEMAGC 75 (334)
Q Consensus 18 ~~~~viiDtD~G~DD~~AL~~~l~~-p~i~v~gIt~v~Gn~~~~~~~~na~~ll~~~g~ 75 (334)
...+|++=.-.|+|-++.+.++... +..++.+|+.-+|..+ ....+.+..+.+.+|.
T Consensus 29 g~~~vvv~lSGGiDSsv~a~l~~~~~~~~~v~av~~~~~~~~-~~~~~~a~~la~~lgi 86 (265)
T PRK13980 29 GAKGVVLGLSGGIDSAVVAYLAVKALGKENVLALLMPSSVSP-PEDLEDAELVAEDLGI 86 (265)
T ss_pred CCCcEEEECCCCHHHHHHHHHHHHHhCccceEEEEeeCCCCC-HHHHHHHHHHHHHhCC
Confidence 3578999999999988877666542 3358899988777543 4467788889888884
No 60
>TIGR00420 trmU tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase. tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (trmU, asuE, or mnmA) is involved in the biosynthesis of the modified nucleoside 5-methylaminomethyl-2-thiouridine (mnm5s2U34) present in the wobble position of some tRNAs. This enzyme appears not to occur in the Archaea.
Probab=26.06 E-value=2.9e+02 Score=26.65 Aligned_cols=58 Identities=26% Similarity=0.473 Sum_probs=38.8
Q ss_pred ceEEEecCCCchHHHHHHHHHcCCCCeEEEEEEecC---------CCChHHHHHHHHHHHHHhCCCCCCee
Q 019923 20 AKLIIDTDPGIDDSMTILMAFQTPELEILGLTTIFG---------NVTTEDATRNALTLCEMAGCPGVPVA 81 (334)
Q Consensus 20 ~~viiDtD~G~DD~~AL~~~l~~p~i~v~gIt~v~G---------n~~~~~~~~na~~ll~~~g~~~IPV~ 81 (334)
++|++=.-.|+|-.+++.++... ..+|.|++.... .+..+...+.++++.+.+| ||..
T Consensus 1 ~kVlValSGGvDSsv~a~lL~~~-G~~V~~v~~~~~~~~~~~~~~~c~~~~~~~~a~~va~~lg---Ip~~ 67 (352)
T TIGR00420 1 KKVIVGLSGGVDSSVSAYLLKQQ-GYEVVGVFMKNWEEDDKNDGHGCTSAEDLRDAQAICEKLG---IPLE 67 (352)
T ss_pred CeEEEEEeCCHHHHHHHHHHHHc-CCeEEEEEEEcccccccccccCcCCHHHHHHHHHHHHHcC---CCEE
Confidence 36777777899888777666554 579999988421 1233445667778877776 5544
No 61
>cd06814 PLPDE_III_DSD_D-TA_like_3 Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes Similar to D-Serine Dehydratase and D-Threonine Aldolase, Unknown Group 3. This subfamily is composed of uncharacterized bacterial proteins with similarity to eukaryotic D-serine dehydratases (DSD) and D-threonine aldolases (D-TA). DSD catalyzes the dehydration of D-serine to aminoacrylate, which is rapidly hydrolyzed to pyruvate and ammonia. D-TA reversibly catalyzes the aldol cleavage of D-threonine into glycine and acetaldehyde, and the synthesis of D-threonine from glycine and acetaldehyde. DSD and D-TA are fold type III PLP-dependent enzymes, similar to bacterial alanine racemase (AR), which contains an N-terminal PLP-binding TIM barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Based on their similarity to AR, it is possible mem
Probab=25.92 E-value=2.9e+02 Score=26.90 Aligned_cols=39 Identities=21% Similarity=0.261 Sum_probs=29.6
Q ss_pred CCceEEEecCCC-----c--h-HHHHHHHHHc-CCCCeEEEEEEecCC
Q 019923 18 NPAKLIIDTDPG-----I--D-DSMTILMAFQ-TPELEILGLTTIFGN 56 (334)
Q Consensus 18 ~~~~viiDtD~G-----~--D-D~~AL~~~l~-~p~i~v~gIt~v~Gn 56 (334)
.+-+|+|+.|+| + + |+.+++-.+. .+.+++.||-+-.|.
T Consensus 132 ~~l~V~lkVDtGm~R~Gv~~~~~~~~l~~~i~~~~~l~~~Gi~ty~gh 179 (379)
T cd06814 132 LTLRINLELDVGLHRGGFADPQTLPKALTAIDAPPRLRFSGLMGYEPH 179 (379)
T ss_pred CceEEEEEeCCCCCCCCCCCHHHHHHHHHHHHhCCCceEEEEEEEccc
Confidence 346899999986 2 3 5777777665 578999999887764
No 62
>KOG3022 consensus Predicted ATPase, nucleotide-binding [Cell cycle control, cell division, chromosome partitioning]
Probab=25.55 E-value=86 Score=29.49 Aligned_cols=57 Identities=19% Similarity=0.344 Sum_probs=36.7
Q ss_pred CceEEEecCCCchHH-HHHHHHHcCCCCeEEEEEEecCCCChHHHHHHHHHHHHHhCCCCCCee
Q 019923 19 PAKLIIDTDPGIDDS-MTILMAFQTPELEILGLTTIFGNVTTEDATRNALTLCEMAGCPGVPVA 81 (334)
Q Consensus 19 ~~~viiDtD~G~DD~-~AL~~~l~~p~i~v~gIt~v~Gn~~~~~~~~na~~ll~~~g~~~IPV~ 81 (334)
--.+||||-+|++|. +.+.--+... +- +|.++. +.+-+..-+++-.++|.+..|||.
T Consensus 157 lDyLviDtPPGtsDehls~~~~~~~~--~g-AviVTT---PQ~vAl~Dv~K~i~fc~K~~I~il 214 (300)
T KOG3022|consen 157 LDYLVIDTPPGTSDEHLSLVQFLRES--DG-AVIVTT---PQEVALQDVRKEIDFCRKAGIPIL 214 (300)
T ss_pred cCEEEEeCCCCCChhhhheeeccccc--Cc-eEEEeC---chhhhhHHHHhhhhhhhhcCCceE
Confidence 457999999998776 4444333321 11 222221 345566778888899998899976
No 63
>PRK11096 ansB L-asparaginase II; Provisional
Probab=25.46 E-value=1.9e+02 Score=28.07 Aligned_cols=61 Identities=21% Similarity=0.153 Sum_probs=41.5
Q ss_pred CCCchHHHHHHHHHcCCCCeEEEEEEecCCCChHHHHHHHHHHHHHhCCCCCC-eeeCCCCCCCCC
Q 019923 27 DPGIDDSMTILMAFQTPELEILGLTTIFGNVTTEDATRNALTLCEMAGCPGVP-VAEGSPEPLKGG 91 (334)
Q Consensus 27 D~G~DD~~AL~~~l~~p~i~v~gIt~v~Gn~~~~~~~~na~~ll~~~g~~~IP-V~~Ga~~pl~~~ 91 (334)
|....|.+.|.-....-.=+.-||.+++|.-+++.++.. +.++ .+ ...| |.-|+.+|+...
T Consensus 81 ~~t~~~~~~l~~~i~~~~~~~dGiVVtHGTDTme~tA~~-Ls~~--~~-~~kPVVlTGAmrP~~~~ 142 (347)
T PRK11096 81 DMNDEVWLTLAKKINTDCDKTDGFVITHGTDTMEETAYF-LDLT--VK-CDKPVVLVGAMRPSTAM 142 (347)
T ss_pred cCCHHHHHHHHHHHHHhcCCCCEEEEeCCCchHHHHHHH-HHHh--cc-CCCCEEEeCCCCCCCCc
Confidence 345778888887776423467899999998787765433 2232 24 4678 568999998654
No 64
>TIGR00552 nadE NAD+ synthetase. NAD+ synthetase is a nearly ubiquitous enzyme for the final step in the biosynthesis of the essensial cofactor NAD. The member of this family from Bacillus subtilis is a strictly NH(3)-dependent NAD(+) synthetase of 272 amino acids. Proteins consisting only of the domain modeled here may be named as NH3-dependent NAD+ synthetase. Amidotransferase activity may reside in a separate protein, or not be present. Some other members of the family, such as from Mycobacterium tuberculosis, are considerably longer, contain an apparent amidotransferase domain, and show glutamine-dependent as well as NH(3)-dependent activity.
Probab=25.36 E-value=2.5e+02 Score=25.41 Aligned_cols=58 Identities=19% Similarity=0.239 Sum_probs=40.2
Q ss_pred CCceEEEecCCCchHHHHHHHHHcCCCCeEEEEEEecCCCChHHHHHHHHHHHHHhCC
Q 019923 18 NPAKLIIDTDPGIDDSMTILMAFQTPELEILGLTTIFGNVTTEDATRNALTLCEMAGC 75 (334)
Q Consensus 18 ~~~~viiDtD~G~DD~~AL~~~l~~p~i~v~gIt~v~Gn~~~~~~~~na~~ll~~~g~ 75 (334)
...+|++=.-.|+|-++.+.++......++.++..-.|..........+..+.+.+|-
T Consensus 21 ~~~~V~vglSGGiDSsvla~l~~~~~~~~~~~~~~~~~~~~~~~e~~~a~~~a~~lgi 78 (250)
T TIGR00552 21 GAKGVVLGLSGGIDSAVVAALCVEALGEQNHALLLPHSVQTPEQDVQDALALAEPLGI 78 (250)
T ss_pred CCCCEEEECCCcHHHHHHHHHHHHhhCCceEEEEECCccCCCHHHHHHHHHHHHHhCC
Confidence 4678888899999888766555443233677776666644445567788888888873
No 65
>PRK00143 mnmA tRNA-specific 2-thiouridylase MnmA; Reviewed
Probab=24.95 E-value=3.1e+02 Score=26.41 Aligned_cols=57 Identities=16% Similarity=0.343 Sum_probs=37.5
Q ss_pred eEEEecCCCchHHHHHHHHHcCCCCeEEEEEEecCCC---------ChHHHHHHHHHHHHHhCCCCCCee
Q 019923 21 KLIIDTDPGIDDSMTILMAFQTPELEILGLTTIFGNV---------TTEDATRNALTLCEMAGCPGVPVA 81 (334)
Q Consensus 21 ~viiDtD~G~DD~~AL~~~l~~p~i~v~gIt~v~Gn~---------~~~~~~~na~~ll~~~g~~~IPV~ 81 (334)
+|++=.=.|+|-.+++.++... ..+|.|++...+.. ..+...+.++++.+.+| ||.+
T Consensus 2 kVlValSGGvDSsvla~lL~~~-G~~V~~v~~~~~~~~~~~~~~~~~s~~d~~~a~~~a~~Lg---Ip~~ 67 (346)
T PRK00143 2 RVVVGMSGGVDSSVAAALLKEQ-GYEVIGVFMKLWDDDDETGKGGCCAEEDIADARRVADKLG---IPHY 67 (346)
T ss_pred eEEEEecCCHHHHHHHHHHHHc-CCcEEEEEEeCCCcccccccCCcCcHHHHHHHHHHHHHcC---CcEE
Confidence 6777777899776665554443 57899999876532 13444566777777766 6655
No 66
>PF02540 NAD_synthase: NAD synthase; InterPro: IPR022310 NAD+ synthase (6.3.5.1 from EC) catalyzes the last step in the biosynthesis of nicotinamide adenine dinucleotide and is induced by stress factors such as heat shock and glucose limitation. The three-dimensional structure of NH3-dependent NAD+ synthetase from Bacillus subtilis, in its free form and in complex with ATP shows that the enzyme consists of a tight homodimer with alpha/beta subunit topology []. Catalyzes the synthesis of GMP from XMP. The protein is a homodimer, but in the archaea it is a heterodimer composed of a glutamine amidotransferase subunit (A) and a GMP-binding subunit (B). This entry contains the GMP-binding subunit (B). ; PDB: 2VXO_A 3UOW_B 3N05_A 2DPL_B 3A4I_A 3SEQ_D 3SZG_A 3SYT_A 3SDB_A 3SEZ_C ....
Probab=24.25 E-value=2.6e+02 Score=25.40 Aligned_cols=57 Identities=19% Similarity=0.314 Sum_probs=43.4
Q ss_pred CCceEEEecCCCchHHHHHHHHHc-CCCCeEEEEEEecCCCChHHHHHHHHHHHHHhCC
Q 019923 18 NPAKLIIDTDPGIDDSMTILMAFQ-TPELEILGLTTIFGNVTTEDATRNALTLCEMAGC 75 (334)
Q Consensus 18 ~~~~viiDtD~G~DD~~AL~~~l~-~p~i~v~gIt~v~Gn~~~~~~~~na~~ll~~~g~ 75 (334)
..+++++--..|+|-+++..++.. -+.-+++||+.-.+ .+.+...++|..+.+.+|-
T Consensus 17 g~~~vVvglSGGiDSav~A~La~~Alg~~~v~~v~mp~~-~~~~~~~~~A~~la~~lgi 74 (242)
T PF02540_consen 17 GAKGVVVGLSGGIDSAVVAALAVKALGPDNVLAVIMPSG-FSSEEDIEDAKELAEKLGI 74 (242)
T ss_dssp TTSEEEEEETSSHHHHHHHHHHHHHHGGGEEEEEEEESS-TSTHHHHHHHHHHHHHHTS
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHhhhccccccccccc-cCChHHHHHHHHHHHHhCC
Confidence 458899999999999988777654 22347899977634 4456778889999999984
No 67
>PRK10660 tilS tRNA(Ile)-lysidine synthetase; Provisional
Probab=24.07 E-value=3.3e+02 Score=27.15 Aligned_cols=57 Identities=12% Similarity=0.296 Sum_probs=40.0
Q ss_pred CCCceEEEecCCCchHHHHHHHHHc-----CCCCeEEEEEEecCCCC-hHHHHHHHHHHHHHhC
Q 019923 17 TNPAKLIIDTDPGIDDSMTILMAFQ-----TPELEILGLTTIFGNVT-TEDATRNALTLCEMAG 74 (334)
Q Consensus 17 ~~~~~viiDtD~G~DD~~AL~~~l~-----~p~i~v~gIt~v~Gn~~-~~~~~~na~~ll~~~g 74 (334)
.+..+|++=.=+|. |.++|+++|. .+.+++.++++-+|-.. .+.-.+.+..+++.+|
T Consensus 13 ~~~~~ilvavSGG~-DS~~Ll~~l~~~~~~~~~~~l~a~hvnhglr~~s~~~~~~~~~~~~~l~ 75 (436)
T PRK10660 13 LTSRQILVAFSGGL-DSTVLLHLLVQWRTENPGVTLRAIHVHHGLSPNADSWVKHCEQVCQQWQ 75 (436)
T ss_pred CCCCeEEEEecCCH-HHHHHHHHHHHHHHhcCCCeEEEEEEeCCCCcchHHHHHHHHHHHHHcC
Confidence 34578999888999 5778888874 45789999999999543 2233345566666655
No 68
>TIGR02432 lysidine_TilS_N tRNA(Ile)-lysidine synthetase, N-terminal domain. The only examples in which the wobble position of a tRNA must discriminate between G and A of mRNA are AUA (Ile) vs. AUG (Met) and UGA (stop) vs. UGG (Trp). In all bacteria, the wobble position of the tRNA(Ile) recognizing AUA is lysidine, a lysine derivative of cytidine. This family describes a protein domain found, apparently, in all bacteria in a single copy. Eukaryotic sequences appear to be organellar. The domain archictecture of this protein family is variable; some, including characterized proteins of E. coli and B. subtilis known to be tRNA(Ile)-lysidine synthetase, include a conserved 50-residue domain that many other members lack. This protein belongs to the ATP-binding PP-loop family ( pfam01171). It appears in the literature and protein databases as TilS, YacA, and putative cell cycle protein MesJ (a misnomer).
Probab=23.80 E-value=2.7e+02 Score=23.61 Aligned_cols=58 Identities=9% Similarity=0.348 Sum_probs=36.2
Q ss_pred eEEEecCCCchHHHHHHHHHc---CCCCeEEEEEEecCCCC-hHHHHHHHHHHHHHhCCCCCCee
Q 019923 21 KLIIDTDPGIDDSMTILMAFQ---TPELEILGLTTIFGNVT-TEDATRNALTLCEMAGCPGVPVA 81 (334)
Q Consensus 21 ~viiDtD~G~DD~~AL~~~l~---~p~i~v~gIt~v~Gn~~-~~~~~~na~~ll~~~g~~~IPV~ 81 (334)
||++=...|.|-...+.++.. ...+++.+|+..+|-.. .+...+.+.++.+.+| ||..
T Consensus 1 ~v~va~SGG~DS~~ll~ll~~~~~~~~~~v~~v~vd~g~~~~~~~~~~~~~~~~~~~g---i~~~ 62 (189)
T TIGR02432 1 RILVAVSGGVDSMALLHLLLKLQPKLKIRLIAAHVDHGLRPESDEEAEFVQQFCKKLN---IPLE 62 (189)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHHcCCCEEEEEeCCCCChhHHHHHHHHHHHHHHcC---CCEE
Confidence 456666778866555544433 23578888988888542 3445666777777765 5544
No 69
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=23.75 E-value=3.9e+02 Score=23.72 Aligned_cols=29 Identities=17% Similarity=0.211 Sum_probs=20.4
Q ss_pred HHHHHHHHHc-CCCceEEEEecch--hHHHHHHh
Q 019923 123 SEFLVDKVSE-YPGEVSILALGPL--TNLALAIK 153 (334)
Q Consensus 123 ~~~i~~~~~~-~p~~vtila~GpL--TNlA~al~ 153 (334)
..+| +.++. .| .+-++++|-. .|++..|+
T Consensus 132 ~~yi-kal~~plp-~~~l~ptGGV~~~n~~~~l~ 163 (201)
T PRK06015 132 AAFL-KALSSPLA-GTFFCPTGGISLKNARDYLS 163 (201)
T ss_pred HHHH-HHHHhhCC-CCcEEecCCCCHHHHHHHHh
Confidence 4544 55544 45 5999999987 89988774
No 70
>PRK00115 hemE uroporphyrinogen decarboxylase; Validated
Probab=23.72 E-value=4.2e+02 Score=25.26 Aligned_cols=39 Identities=23% Similarity=0.356 Sum_probs=25.1
Q ss_pred cccCCHHHHHHHHH---------------cCCcEEEEeccccceeecCHHHHHHHH
Q 019923 185 NIYGDPEAADVVFT---------------SGANIAVVGINITTQVKLTDADFLELR 225 (334)
Q Consensus 185 N~~~DPeAA~~Vl~---------------s~~~i~~v~ldvt~~~~~~~~~~~~l~ 225 (334)
.++-||+.++.+++ +|..+.++.-+.. ..+++++++++.
T Consensus 169 ~~~~~Pe~v~~ll~~~t~~~~~~~~~~~eaGad~i~i~d~~~--~~lsp~~f~ef~ 222 (346)
T PRK00115 169 MMYAEPELLHALLDKLADATIAYLNAQIEAGAQAVQIFDSWA--GALSPADYREFV 222 (346)
T ss_pred HHHhCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEecCcc--ccCCHHHHHHHH
Confidence 45667776666653 4777666643322 368999998875
No 71
>CHL00181 cbbX CbbX; Provisional
Probab=23.68 E-value=1.4e+02 Score=27.86 Aligned_cols=48 Identities=15% Similarity=0.253 Sum_probs=38.1
Q ss_pred CccHHHHHHHHHHcCCCceEEEEecchhHHHHHHhhCcchHhccceEE
Q 019923 119 DKNASEFLVDKVSEYPGEVSILALGPLTNLALAIKRDSSFASKVKNIV 166 (334)
Q Consensus 119 ~~~a~~~i~~~~~~~p~~vtila~GpLTNlA~al~~~P~~~~~i~~iv 166 (334)
..++.+.|.+.+..+.+.+.|++.|.-..+...+..+|.+.+++..++
T Consensus 144 ~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i 191 (287)
T CHL00181 144 GSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHV 191 (287)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceE
Confidence 356778888888776677889999987788888888999999986433
No 72
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=23.49 E-value=5.2e+02 Score=23.79 Aligned_cols=77 Identities=18% Similarity=0.231 Sum_probs=49.6
Q ss_pred CCCCCccHHHHHHHHHHcCC-CceEEEEecchh--H---HHHHHhhCcchHhccceEEEecC-CCCCCCCCCcccccccc
Q 019923 115 AKKCDKNASEFLVDKVSEYP-GEVSILALGPLT--N---LALAIKRDSSFASKVKNIVVLGG-AFFALGNVNPAAEANIY 187 (334)
Q Consensus 115 ~~~~~~~a~~~i~~~~~~~p-~~vtila~GpLT--N---lA~al~~~P~~~~~i~~iviMGG-~~~~~GN~~~~aEfN~~ 187 (334)
..+.+..|+++=+++-.++. ++|+++++||-. . |=.+|.+ -..+.|..-. .+. .
T Consensus 34 iN~~D~~AlE~Alrlke~~~g~~Vtvvs~Gp~~a~~~~~lr~aLAm------GaD~avli~d~~~~-------------g 94 (256)
T PRK03359 34 ISQYDLNAIEAACQLKQQAAEAQVTALSVGGKALTNAKGRKDVLSR------GPDELIVVIDDQFE-------------Q 94 (256)
T ss_pred cChhhHHHHHHHHHHhhhcCCCEEEEEEECCcchhhHHHHHHHHHc------CCCEEEEEecCccc-------------C
Confidence 34567889998888777765 699999999964 2 2223333 2334444322 221 2
Q ss_pred CCHHHHHHHHHc-----CCcEEEEeccc
Q 019923 188 GDPEAADVVFTS-----GANIAVVGINI 210 (334)
Q Consensus 188 ~DPeAA~~Vl~s-----~~~i~~v~ldv 210 (334)
.|+.+...+|.+ +..+++++.-.
T Consensus 95 ~D~~~tA~~La~ai~~~~~DLVl~G~~s 122 (256)
T PRK03359 95 ALPQQTASALAAAAQKAGFDLILCGDGS 122 (256)
T ss_pred cCHHHHHHHHHHHHHHhCCCEEEEcCcc
Confidence 599999999885 45677777543
No 73
>cd01995 ExsB ExsB is a transcription regulator related protein. It is a subfamily of a Adenosine nucleotide binding superfamily of proteins. This protein family is represented by a single member in nearly every completed large ( 1000 genes) prokaryotic genome. In Rhizobium meliloti, a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA. In Arthrobacter viscosus, the homologous gene is designated ALU1 and is associated with an aluminum tolerance phenotype. The function is unknown
Probab=23.09 E-value=3.3e+02 Score=22.70 Aligned_cols=51 Identities=18% Similarity=0.264 Sum_probs=32.9
Q ss_pred EEEecCCCchHHHHHHHHHcCCCCeEEEEEEecCCCChHHHHHHHHHHHHHhC
Q 019923 22 LIIDTDPGIDDSMTILMAFQTPELEILGLTTIFGNVTTEDATRNALTLCEMAG 74 (334)
Q Consensus 22 viiDtD~G~DD~~AL~~~l~~p~i~v~gIt~v~Gn~~~~~~~~na~~ll~~~g 74 (334)
|++=.=.|.|-.+++.++.. ...++.+++..+|..+.. ..+.+.++.+.+|
T Consensus 2 vlv~~SGG~DS~~~~~~~~~-~~~~v~~~~~~~~~~~~~-~~~~~~~~~~~~g 52 (169)
T cd01995 2 AVVLLSGGLDSTTCLAWAKK-EGYEVHALSFDYGQRHAK-EEEAAKLIAEKLG 52 (169)
T ss_pred EEEEecCcHHHHHHHHHHHH-cCCcEEEEEEECCCCChh-HHHHHHHHHHHHC
Confidence 44445578876665555544 457899998888754332 3366777777777
No 74
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=23.02 E-value=3e+02 Score=21.24 Aligned_cols=59 Identities=19% Similarity=0.316 Sum_probs=33.0
Q ss_pred eEEEecCCCchHHHHHHHHHcCCCCeEEEEEEecCCCChHHHHHHHHHHHHHhC--CCCCCeeeCCCCC
Q 019923 21 KLIIDTDPGIDDSMTILMAFQTPELEILGLTTIFGNVTTEDATRNALTLCEMAG--CPGVPVAEGSPEP 87 (334)
Q Consensus 21 ~viiDtD~G~DD~~AL~~~l~~p~i~v~gIt~v~Gn~~~~~~~~na~~ll~~~g--~~~IPV~~Ga~~p 87 (334)
-.++|.+...++....+... +.+++|+|+..+. .-. .+.++++... .++++|..|-..+
T Consensus 31 v~~~d~~~~~~~l~~~~~~~---~pd~V~iS~~~~~--~~~---~~~~l~~~~k~~~p~~~iv~GG~~~ 91 (121)
T PF02310_consen 31 VDILDANVPPEELVEALRAE---RPDVVGISVSMTP--NLP---EAKRLARAIKERNPNIPIVVGGPHA 91 (121)
T ss_dssp EEEEESSB-HHHHHHHHHHT---TCSEEEEEESSST--HHH---HHHHHHHHHHTTCTTSEEEEEESSS
T ss_pred EEEECCCCCHHHHHHHHhcC---CCcEEEEEccCcC--cHH---HHHHHHHHHHhcCCCCEEEEECCch
Confidence 34788887666666644443 4578999874332 122 2333433332 2578988776543
No 75
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=22.95 E-value=2.2e+02 Score=22.20 Aligned_cols=61 Identities=13% Similarity=0.239 Sum_probs=35.2
Q ss_pred EecCCCchHHHHHHHHHcCCCCeEEEEEEecCCCChHHHHHHHHHHHHHhCCCCCCeeeCCCCCCC
Q 019923 24 IDTDPGIDDSMTILMAFQTPELEILGLTTIFGNVTTEDATRNALTLCEMAGCPGVPVAEGSPEPLK 89 (334)
Q Consensus 24 iDtD~G~DD~~AL~~~l~~p~i~v~gIt~v~Gn~~~~~~~~na~~ll~~~g~~~IPV~~Ga~~pl~ 89 (334)
++.+....+....+. .-+.++++|+++.+. ....+....+.++..+..+++|+.|-..+-.
T Consensus 33 lg~~~~~~~l~~~~~---~~~pdvV~iS~~~~~--~~~~~~~~i~~l~~~~~~~~~i~vGG~~~~~ 93 (119)
T cd02067 33 LGVDVPPEEIVEAAK---EEDADAIGLSGLLTT--HMTLMKEVIEELKEAGLDDIPVLVGGAIVTR 93 (119)
T ss_pred CCCCCCHHHHHHHHH---HcCCCEEEEeccccc--cHHHHHHHHHHHHHcCCCCCeEEEECCCCCh
Confidence 345555555554432 335689999877443 2233444555555555447999988765543
No 76
>TIGR00268 conserved hypothetical protein TIGR00268. The N-terminal region of the model shows similarity to Argininosuccinate synthase proteins using PSI-blast and using the recognize protein identification server.
Probab=22.54 E-value=3e+02 Score=24.97 Aligned_cols=56 Identities=18% Similarity=0.326 Sum_probs=41.2
Q ss_pred CCceEEEecCCCchHHHHHHHHHcCCCCeEEEEEEecCCCChHHHHHHHHHHHHHhCC
Q 019923 18 NPAKLIIDTDPGIDDSMTILMAFQTPELEILGLTTIFGNVTTEDATRNALTLCEMAGC 75 (334)
Q Consensus 18 ~~~~viiDtD~G~DD~~AL~~~l~~p~i~v~gIt~v~Gn~~~~~~~~na~~ll~~~g~ 75 (334)
...+|++=.-.|+|-.+.+.++... ..++.+|+..++..+ ....+.+.++.+.+|.
T Consensus 11 ~~~~vlVa~SGGvDSs~ll~la~~~-g~~v~av~~~~~~~~-~~e~~~a~~~a~~lgi 66 (252)
T TIGR00268 11 EFKKVLIAYSGGVDSSLLAAVCSDA-GTEVLAITVVSPSIS-PRELEDAIIIAKEIGV 66 (252)
T ss_pred hcCCEEEEecCcHHHHHHHHHHHHh-CCCEEEEEecCCCCC-HHHHHHHHHHHHHcCC
Confidence 3567888888999877777666655 578999998876544 3456778888888773
No 77
>TIGR00519 asnASE_I L-asparaginases, type I. Two related families of asparaginase are designated type I and type II according to the terminology in E. coli, which has both: L-asparaginase I is a low-affinity enzyme found in the cytoplasm, while L-asparaginase II is a high-affinity secreted enzyme synthesized with a cleavable signal sequence. This model describes L-asparaginases related to type I of E. coli. Archaeal putative asparaginases are of this type but contain an extra ~ 80 residues in a conserved N-terminal region. These archaeal homologs are included in this model.
Probab=22.47 E-value=1.6e+02 Score=28.36 Aligned_cols=62 Identities=15% Similarity=0.054 Sum_probs=41.7
Q ss_pred cCCCchHHHHHHHHHcCCCCeEEEEEEecCCCChHHHHHHHHHHHHHhCCCCCC-eeeCCCCCCCCC
Q 019923 26 TDPGIDDSMTILMAFQTPELEILGLTTIFGNVTTEDATRNALTLCEMAGCPGVP-VAEGSPEPLKGG 91 (334)
Q Consensus 26 tD~G~DD~~AL~~~l~~p~i~v~gIt~v~Gn~~~~~~~~na~~ll~~~g~~~IP-V~~Ga~~pl~~~ 91 (334)
.|...+|.+.|+-.+..---+.-||.+++|.-+++.++.-..-+++ ...| |.-|+.+|+...
T Consensus 57 s~~tp~~w~~la~~I~~~~~~~dG~VVtHGTDTme~TA~~Ls~~l~----~~kPVVlTGsmrp~~~~ 119 (336)
T TIGR00519 57 ENMKPEYWVEIAEAVKKEYDDYDGFVITHGTDTMAYTAAALSFMLE----TPKPVVFTGAQRSSDRP 119 (336)
T ss_pred ccCCHHHHHHHHHHHHHHHhcCCeEEEccCCchHHHHHHHHHHHcC----CCCCEEEECCCCCCCCc
Confidence 3456789888888775211158899999998777755433322332 3678 569999999654
No 78
>COG0603 Predicted PP-loop superfamily ATPase [General function prediction only]
Probab=22.41 E-value=4.9e+02 Score=23.58 Aligned_cols=55 Identities=20% Similarity=0.238 Sum_probs=45.0
Q ss_pred CceEEEecCCCchHHHHHHHHHcCCCCeEEEEEEecCCCChHHHHHHHHHHHHHhCC
Q 019923 19 PAKLIIDTDPGIDDSMTILMAFQTPELEILGLTTIFGNVTTEDATRNALTLCEMAGC 75 (334)
Q Consensus 19 ~~~viiDtD~G~DD~~AL~~~l~~p~i~v~gIt~v~Gn~~~~~~~~na~~ll~~~g~ 75 (334)
+++.|+=.=.|.|-...+.+|++.- -+|.+||--+|.-. ..-.+.|+++.+.+|.
T Consensus 2 ~~kavvl~SGG~DStt~l~~a~~~~-~ev~alsfdYGQrh-~~Ele~A~~iak~lgv 56 (222)
T COG0603 2 MKKAVVLLSGGLDSTTCLAWAKKEG-YEVHALTFDYGQRH-RKELEAAKELAKKLGV 56 (222)
T ss_pred CceEEEEccCChhHHHHHHHHHhcC-CEEEEEEeeCCCCc-HHHHHHHHHHHHHcCC
Confidence 5667777778999888888888764 78999999999877 6667788999999885
No 79
>cd07376 PLPDE_III_DSD_D-TA_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes Similar to D-Serine Dehydratase and D-Threonine Aldolase. This family includes eukaryotic D-serine dehydratases (DSD), cryptic DSDs from bacteria, D-threonine aldolases (D-TA), low specificity D-TAs, and similar uncharacterized proteins. DSD catalyzes the dehydration of D-serine to aminoacrylate, which is rapidly hydrolyzed to pyruvate and ammonia. D-TA reversibly catalyzes the aldol cleavage of D-threonine into glycine and acetaldehyde, and the synthesis of D-threonine from glycine and acetaldehyde. Members of this family are fold type III PLP-dependent enzymes, similar to bacterial alanine racemase (AR), which contains an N-terminal PLP-binding TIM barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Based on similarity to AR, it is poss
Probab=22.22 E-value=4.7e+02 Score=24.68 Aligned_cols=40 Identities=18% Similarity=0.487 Sum_probs=27.9
Q ss_pred CCceEEEecCCC-----c--hHHHHHHHHH---cCCCCeEEEEEEecCCC
Q 019923 18 NPAKLIIDTDPG-----I--DDSMTILMAF---QTPELEILGLTTIFGNV 57 (334)
Q Consensus 18 ~~~~viiDtD~G-----~--DD~~AL~~~l---~~p~i~v~gIt~v~Gn~ 57 (334)
.+.+|+|+.|+| + ++..++..+. ..+.+++.||.+=.|..
T Consensus 110 ~~~~V~l~ID~G~~R~Gv~~~~~~~l~~~~~i~~~~~l~l~Gl~~h~g~~ 159 (345)
T cd07376 110 VRLRVMLEVDVGGHRSGVRPEEAAALALADAVQASPGLRLAGVMAYEGHI 159 (345)
T ss_pred CeeEEEEEeCCCCCcCCCCCcHHHHHHHHHHhccCCCeEEeEEEeecchh
Confidence 346899999976 4 3555555443 46789999998877743
No 80
>TIGR00342 thiazole biosynthesis/tRNA modification protein ThiI. The protein product of the thiI gene is required for the synthesis of the thiazole moiety in thiamine biosynthesis. It also acts in the generation of 4-thiouridine in tRNA, and may occur in species (such as Mycoplasma genitalium) that lack de novo thiamine biosynthesis.
Probab=22.14 E-value=4.2e+02 Score=25.69 Aligned_cols=56 Identities=14% Similarity=0.198 Sum_probs=43.1
Q ss_pred CceEEEecCCCchHHHHHHHHHcCCCCeEEEEEEecCCCChHHHHHHHHHHHHHhCC
Q 019923 19 PAKLIIDTDPGIDDSMTILMAFQTPELEILGLTTIFGNVTTEDATRNALTLCEMAGC 75 (334)
Q Consensus 19 ~~~viiDtD~G~DD~~AL~~~l~~p~i~v~gIt~v~Gn~~~~~~~~na~~ll~~~g~ 75 (334)
..++++=.=.|+|-.+|+.++.+. ..++.+++..+|....+...+.+.++.+.++.
T Consensus 172 ~~kvlvllSGGiDS~vaa~ll~kr-G~~V~av~~~~~~~~~~~~~~~v~~l~~~l~~ 227 (371)
T TIGR00342 172 QGKVLALLSGGIDSPVAAFMMMKR-GCRVVAVHFFNEPAASEKAREKVERLANSLNE 227 (371)
T ss_pred CCeEEEEecCCchHHHHHHHHHHc-CCeEEEEEEeCCCCccHHHHHHHHHHHHHHhh
Confidence 456777777889988888777665 58999999888766666777888888887753
No 81
>cd00411 Asparaginase Asparaginase (amidohydrolase): Asparaginases are tetrameric enzymes that catalyze the hydrolysis of asparagine to aspartic acid and ammonia. In bacteria, there are two classes of amidohydrolases, one highly specific for asparagine and localised to the periplasm, and a second (asparaginase- glutaminase) present in the cytosol that hydrolyzises both asparagine and glutamine with similar specificities.
Probab=22.06 E-value=1.5e+02 Score=28.20 Aligned_cols=62 Identities=21% Similarity=0.119 Sum_probs=40.6
Q ss_pred cCCCchHHHHHHHHHcCCCCeEEEEEEecCCCChHHHHHHHHHHHHHhCCCCCC-eeeCCCCCCCCC
Q 019923 26 TDPGIDDSMTILMAFQTPELEILGLTTIFGNVTTEDATRNALTLCEMAGCPGVP-VAEGSPEPLKGG 91 (334)
Q Consensus 26 tD~G~DD~~AL~~~l~~p~i~v~gIt~v~Gn~~~~~~~~na~~ll~~~g~~~IP-V~~Ga~~pl~~~ 91 (334)
+|....|...|.-.+..---+.-||.+++|.-+++.++.....+++ ...| |.-|+.+|+...
T Consensus 58 s~~t~~~w~~l~~~I~~~~~~~dGiVVtHGTDTmeeTA~~L~~~l~----~~kPVVlTGA~rp~~~~ 120 (323)
T cd00411 58 SDMTDEDWLKIAKDINELYDSYDGFVITHGTDTMEETAYFLSLTLE----NDKPVVLTGSMRPSTEL 120 (323)
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCcEEEEcCcccHHHHHHHHHHHhc----CCCCEEEECCCCCCCCc
Confidence 3445778888877664211147899999998888765543333332 2678 568999998653
No 82
>TIGR02153 gatD_arch glutamyl-tRNA(Gln) amidotransferase, subunit D. This peptide is found only in the Archaea. It is part of a heterodimer, with GatE (TIGR00134), that acts as an amidotransferase on misacylated Glu-tRNA(Gln) to produce Gln-tRNA(Gln). The analogous amidotransferase found in bacteria is the GatABC system, although GatABC homologs in the Archaea appear to act instead on Asp-tRNA(Asn).
Probab=21.35 E-value=1.4e+02 Score=29.64 Aligned_cols=64 Identities=16% Similarity=0.059 Sum_probs=41.9
Q ss_pred ecCCCchHHHHHHHHHcCCCC-eEEEEEEecCCCChHHHHHHHHHHHHHhCCCCCC-eeeCCCCCCCCC
Q 019923 25 DTDPGIDDSMTILMAFQTPEL-EILGLTTIFGNVTTEDATRNALTLCEMAGCPGVP-VAEGSPEPLKGG 91 (334)
Q Consensus 25 DtD~G~DD~~AL~~~l~~p~i-~v~gIt~v~Gn~~~~~~~~na~~ll~~~g~~~IP-V~~Ga~~pl~~~ 91 (334)
..|+...|.+.|+-.+..--- ..-||.++||.-+++.++.-..-+++. .+.| |.-|+.+|+..+
T Consensus 117 S~~mtp~~w~~La~~I~~~~~~~~dGvVVtHGTDTM~yTA~aLs~~l~~---~~kPVVlTGAqrp~~~~ 182 (404)
T TIGR02153 117 SENMKPEYWIKIAEAVAKALKEGADGVVVAHGTDTMAYTAAALSFMFET---LPVPVVLVGAQRSSDRP 182 (404)
T ss_pred chhCCHHHHHHHHHHHHHHhhcCCCcEEEecCChhHHHHHHHHHHHhhC---CCCCEEEECCCCCCCCC
Confidence 445567888888877653101 247999999987777654433333332 2678 569999998765
No 83
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=21.16 E-value=2.1e+02 Score=23.68 Aligned_cols=45 Identities=16% Similarity=0.283 Sum_probs=32.1
Q ss_pred cCCCCeEEEEEEecCCCChHHHHHHHHHHHHHhCCCCCCeeeCCCCC
Q 019923 41 QTPELEILGLTTIFGNVTTEDATRNALTLCEMAGCPGVPVAEGSPEP 87 (334)
Q Consensus 41 ~~p~i~v~gIt~v~Gn~~~~~~~~na~~ll~~~g~~~IPV~~Ga~~p 87 (334)
...+.+++|+|+..|.. ........+.|+..|..+++|..|-.-+
T Consensus 49 ~~~~adiVglS~l~~~~--~~~~~~~~~~l~~~gl~~~~vivGG~~v 93 (134)
T TIGR01501 49 IETKADAILVSSLYGHG--EIDCKGLRQKCDEAGLEGILLYVGGNLV 93 (134)
T ss_pred HHcCCCEEEEecccccC--HHHHHHHHHHHHHCCCCCCEEEecCCcC
Confidence 34478999999887743 3345567777788887788888777543
No 84
>cd06822 PLPDE_III_YBL036c_euk Pyridoxal 5-phosphate (PLP)-binding TIM barrel domain of Type III PLP-Dependent Enzymes, Eukaryotic YBL036c-like proteins. This subfamily contains mostly uncharacterized eukaryotic proteins with similarity to the yeast hypothetical protein YBL036c, which is homologous to a Pseudomonas aeruginosa gene that is co-transcribed with a known proline biosynthetic gene. YBL036c is a single domain monomeric protein with a typical TIM barrel fold. It binds the PLP cofactor and has been shown to exhibit amino acid racemase activity. The YBL036c structure is similar to the N-terminal domain of the fold type III PLP-dependent enzymes, bacterial alanine racemase and eukaryotic ornithine decarboxylase, which are two-domain dimeric proteins. The lack of a second domain in YBL036c may explain limited D- to L-alanine racemase or non-specific racemase activity. Some members of this subfamily are also referred to as PROSC (Proline synthetase co-transcribed bacterial homolog)
Probab=21.06 E-value=4.2e+02 Score=23.91 Aligned_cols=41 Identities=20% Similarity=0.340 Sum_probs=32.1
Q ss_pred CCceEEEecCCC---------chHHHHHHHHHc--CCCCeEEEEEEecCCCC
Q 019923 18 NPAKLIIDTDPG---------IDDSMTILMAFQ--TPELEILGLTTIFGNVT 58 (334)
Q Consensus 18 ~~~~viiDtD~G---------~DD~~AL~~~l~--~p~i~v~gIt~v~Gn~~ 58 (334)
.+..|+|+.|.| ++++..|+-.+. .|.+++.|+-|..|...
T Consensus 116 ~~~~VlIqVn~g~e~~K~Gv~~~e~~~l~~~i~~~~~~L~l~GLMt~~~~~~ 167 (227)
T cd06822 116 EPLKVMVQVNTSGEESKSGLEPSEAVELVKHIIEECPNLKFSGLMTIGSFGY 167 (227)
T ss_pred CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHHHhhCCCceEEEEEeeCCCCC
Confidence 356888888864 478888887774 68999999999988643
No 85
>PF06508 QueC: Queuosine biosynthesis protein QueC; InterPro: IPR018317 This protein family is represented by a single member in nearly every completed large (> 1000 genes) prokaryotic genome. In Rhizobium meliloti (Sinorhizobium meliloti), a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA [, ]. In Arthrobacter viscosus, the homologous gene is designated alu1 and is associated with an aluminum tolerance phenotype. When expressed in Escherichia coli, it conferred aliminium tolerance []. The entry also contains the gene queC, which is responsible for the conversion of GTP to 7-cyano-7-deazaguanine (preQ0). The biosynthesis of hypermodified tRNA nucleoside queuosine only occurs in eubacteria. It occupies the wobble position for all known tRNAs that are specific for Asp, Asn, His or Tyr [].; PDB: 3BL5_B 2PG3_A.
Probab=20.67 E-value=2.7e+02 Score=24.73 Aligned_cols=52 Identities=17% Similarity=0.257 Sum_probs=38.5
Q ss_pred EEEecCCCchHHHHHHHHHcCCCCeEEEEEEecCCCChHHHHHHHHHHHHHhCC
Q 019923 22 LIIDTDPGIDDSMTILMAFQTPELEILGLTTIFGNVTTEDATRNALTLCEMAGC 75 (334)
Q Consensus 22 viiDtD~G~DD~~AL~~~l~~p~i~v~gIt~v~Gn~~~~~~~~na~~ll~~~g~ 75 (334)
+++=.=.|+|-...+.++... ..+|.+|+..+|-- .+.-.+.++++.+.+|.
T Consensus 2 avvl~SGG~DSt~~l~~~~~~-~~~v~al~~~YGq~-~~~El~~a~~i~~~l~v 53 (209)
T PF06508_consen 2 AVVLFSGGLDSTTCLYWAKKE-GYEVYALTFDYGQR-HRRELEAAKKIAKKLGV 53 (209)
T ss_dssp EEEE--SSHHHHHHHHHHHHH--SEEEEEEEESSST-TCHHHHHHHHHHHHCT-
T ss_pred EEEEeCCCHHHHHHHHHHHHc-CCeEEEEEEECCCC-CHHHHHHHHHHHHHhCC
Confidence 444455788877777777665 47899999999987 66778899999999985
No 86
>cd00635 PLPDE_III_YBL036c_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, YBL036c-like proteins. This family contains mostly uncharacterized proteins, widely distributed among eukaryotes, bacteria and archaea, that bear similarity to the yeast hypothetical protein YBL036c, which is homologous to a Pseudomonas aeruginosa gene that is co-transcribed with a known proline biosynthetic gene. YBL036c is a single domain monomeric protein with a typical TIM barrel fold. It binds the PLP cofactor and has been shown to exhibit amino acid racemase activity. The YBL036c structure is similar to the N-terminal domain of the fold type III PLP-dependent enzymes, bacterial alanine racemase and eukaryotic ornithine decarboxylase, which are two-domain dimeric proteins. The lack of a second domain in YBL036c may explain limited D- to L-alanine racemase or non-specific racemase activity.
Probab=20.62 E-value=4.2e+02 Score=23.38 Aligned_cols=40 Identities=23% Similarity=0.330 Sum_probs=26.8
Q ss_pred CceEEEecCCC---------chHHHHHHHHH-cCCCCeEEEEEEecCCCC
Q 019923 19 PAKLIIDTDPG---------IDDSMTILMAF-QTPELEILGLTTIFGNVT 58 (334)
Q Consensus 19 ~~~viiDtD~G---------~DD~~AL~~~l-~~p~i~v~gIt~v~Gn~~ 58 (334)
+.+|+|..|+| .||+..++-.+ ..|.+++.||.+-.++..
T Consensus 116 ~~~v~lkvdtG~~~~R~G~~~~~~~~~~~~i~~~~~l~~~Gi~sh~s~~~ 165 (222)
T cd00635 116 VLDVLVQVNIGGEESKSGVAPEELEELLEEIAALPNLRIRGLMTIAPLTE 165 (222)
T ss_pred CCcEEEEEecCCCCCCCCCCHHHHHHHHHHHHcCCCCcEEEEEEECCCCC
Confidence 45677777765 26766665444 467899999988555543
No 87
>cd06824 PLPDE_III_Yggs_like Pyridoxal 5-phosphate (PLP)-binding TIM barrel domain of Type III PLP-Dependent Enzymes, Yggs-like proteins. This subfamily contains mainly uncharacterized proteobacterial proteins with similarity to the hypothetical Escherichia coli protein YggS, a homolog of yeast YBL036c, which is homologous to a Pseudomonas aeruginosa gene that is co-transcribed with a known proline biosynthetic gene. Like yeast YBL036c, Yggs is a single domain monomeric protein with a typical TIM-barrel fold. Its structure, which shows a covalently-bound PLP cofactor, is similar to the N-terminal domain of the fold type III PLP-dependent enzymes, bacterial alanine racemase and eukaryotic ornithine decarboxylase, which are two-domain dimeric proteins. YggS has not been characterized extensively and its biological function is still unkonwn.
Probab=20.47 E-value=4.9e+02 Score=23.02 Aligned_cols=38 Identities=18% Similarity=0.330 Sum_probs=26.4
Q ss_pred eEEEecCCC-----c--hHHHHHHHHHc-CCCCeEEEEEEecCCCC
Q 019923 21 KLIIDTDPG-----I--DDSMTILMAFQ-TPELEILGLTTIFGNVT 58 (334)
Q Consensus 21 ~viiDtD~G-----~--DD~~AL~~~l~-~p~i~v~gIt~v~Gn~~ 58 (334)
.|-||||.| + +++..++-.+. .|.+++.||-|=.++..
T Consensus 122 ~l~id~~~Gm~R~Gi~~~~~~~~~~~i~~~~~l~l~Gl~tH~a~~~ 167 (224)
T cd06824 122 CIQVNISGEDSKSGVAPEDAAELAEAISQLPNLRLRGLMAIPAPTD 167 (224)
T ss_pred EEEEEcCCCCCCCCCCHHHHHHHHHHHhcCCCCcEEEEEEeCCCCC
Confidence 337788763 4 57777765554 68899999988766543
Done!