Query 019923
Match_columns 334
No_of_seqs 146 out of 1189
Neff 7.7
Searched_HMMs 29240
Date Mon Mar 25 09:07:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019923.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019923hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3t8j_A Purine nucleosidase, (I 100.0 2E-81 7E-86 591.3 33.4 308 19-333 1-310 (311)
2 1q8f_A Pyrimidine nucleoside h 100.0 4E-81 1.4E-85 590.8 32.8 306 18-333 2-308 (313)
3 2mas_A Inosine-uridine nucleos 100.0 1.3E-80 4.5E-85 587.7 33.8 305 20-333 2-309 (314)
4 1yoe_A Hypothetical protein YB 100.0 1.5E-80 5E-85 588.9 34.2 308 17-333 11-320 (322)
5 3t8i_A Purine nucleosidase, (I 100.0 1.2E-79 4.1E-84 577.0 31.0 304 19-333 1-306 (306)
6 3fz0_A Nucleoside hydrolase, p 100.0 1.9E-78 6.5E-83 579.3 28.3 314 16-333 3-358 (360)
7 2c40_A Inosine-uridine preferr 100.0 2.6E-75 8.8E-80 551.5 24.2 301 19-334 1-310 (312)
8 3epw_A IAG-nucleoside hydrolas 100.0 3.2E-74 1.1E-78 548.3 16.8 303 17-333 11-337 (338)
9 2yhg_A SDE_182CT, cellulose-bi 99.4 3.3E-12 1.1E-16 123.4 13.2 132 18-172 27-189 (437)
10 2der_A TRNA-specific 2-thiouri 50.3 69 0.0024 29.9 9.2 61 17-81 15-82 (380)
11 1ni5_A Putative cell cycle pro 46.2 62 0.0021 30.7 8.3 61 18-82 12-78 (433)
12 2hma_A Probable tRNA (5-methyl 41.5 80 0.0028 29.4 8.1 60 18-81 8-74 (376)
13 3k32_A Uncharacterized protein 41.3 44 0.0015 28.0 5.8 53 18-74 5-57 (203)
14 3bl5_A Queuosine biosynthesis 35.8 84 0.0029 26.0 6.7 54 19-74 3-56 (219)
15 2yxb_A Coenzyme B12-dependent 33.7 71 0.0024 25.8 5.6 41 43-85 68-108 (161)
16 1ccw_A Protein (glutamate muta 27.8 47 0.0016 26.0 3.5 39 44-84 54-92 (137)
17 3a2k_A TRNA(Ile)-lysidine synt 26.9 83 0.0028 30.1 5.7 62 17-82 16-83 (464)
18 4f4h_A Glutamine dependent NAD 25.1 1E+02 0.0034 30.4 6.0 64 17-81 298-364 (565)
19 1o7j_A L-asparaginase; atomic 24.7 2.1E+02 0.0072 26.0 7.7 62 26-91 63-127 (327)
20 2pg3_A Queuosine biosynthesis 24.7 2.2E+02 0.0076 23.8 7.6 54 20-75 3-56 (232)
21 2wlt_A L-asparaginase; hydrola 24.4 2.1E+02 0.007 26.1 7.6 60 26-91 63-127 (332)
22 1xng_A NH(3)-dependent NAD(+) 23.1 1.2E+02 0.004 26.5 5.5 57 18-75 24-80 (268)
23 3auf_A Glycinamide ribonucleot 23.1 1.2E+02 0.004 26.2 5.4 64 9-82 12-77 (229)
24 1vl2_A Argininosuccinate synth 22.9 2.3E+02 0.0078 26.9 7.8 56 16-75 11-66 (421)
25 2obn_A Hypothetical protein; s 22.5 2.6E+02 0.009 25.7 8.0 61 18-81 253-332 (349)
26 3rjz_A N-type ATP pyrophosphat 22.4 2.3E+02 0.0079 24.5 7.2 139 20-210 5-149 (237)
27 2lqo_A Putative glutaredoxin R 21.5 1.6E+02 0.0053 21.3 5.1 42 180-222 30-76 (92)
28 1wsa_A Asparaginase, asparagin 21.2 2.2E+02 0.0074 25.9 7.1 60 26-91 61-125 (330)
29 1agx_A Glutaminase-asparaginas 21.0 2E+02 0.0068 26.2 6.8 60 26-91 60-124 (331)
No 1
>3t8j_A Purine nucleosidase, (IUNH-1); nucleoside hydrolase, thermostable protein, open (alpha,beta structure, rossmann fold, NH-fold; 1.60A {Sulfolobus solfataricus}
Probab=100.00 E-value=2e-81 Score=591.27 Aligned_cols=308 Identities=29% Similarity=0.495 Sum_probs=286.0
Q ss_pred CceEEEecCCCchHHHHHHHHHcCCCCeEEEEEEecCCCChHHHHHHHHHHHHHhCCCCCCeeeCCCCCCCCCCCccccc
Q 019923 19 PAKLIIDTDPGIDDSMTILMAFQTPELEILGLTTIFGNVTTEDATRNALTLCEMAGCPGVPVAEGSPEPLKGGKPRVAEF 98 (334)
Q Consensus 19 ~~~viiDtD~G~DD~~AL~~~l~~p~i~v~gIt~v~Gn~~~~~~~~na~~ll~~~g~~~IPV~~Ga~~pl~~~~~~~~~~ 98 (334)
++|||||||+|+||++||+|| .+|+++|+|||+++||++.+++++|++++|+.+|+ +||||+|+.+||.++. ..+++
T Consensus 1 M~kvIiDtD~G~DDa~Al~~a-~~p~iel~gIttv~GN~~~~~~~~Na~~ll~~~g~-diPV~~Ga~~Pl~~~~-~~a~~ 77 (311)
T 3t8j_A 1 MRHFIIDCDTAEDDVLSLYLL-LKNNIDVVAVTIVEGNISYEQEVKNALWALEQVNR-EIPVYPGANKPLLKNY-ITVEK 77 (311)
T ss_dssp CCEEEEEECCSHHHHHHHHHH-HHTTCEEEEEEECSSSSCHHHHHHHHHHHHHHTTC-CCCEEECCSSCSSSCC-CCCHH
T ss_pred CceEEEECCCChHHHHHHHHH-cCCCCEEEEEEEccCCCCHHHHHHHHHHHHHHcCC-CCCEEECCCCCCCCCC-ccchh
Confidence 579999999999999999999 78999999999999999999999999999999999 9999999999999864 56788
Q ss_pred ccCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHcCCCceEEEEecchhHHHHHHhhCcchHhccceEEEecCCCCCCCCC
Q 019923 99 AHGSDGMGNISLTPPKAKKCDKNASEFLVDKVSEYPGEVSILALGPLTNLALAIKRDSSFASKVKNIVVLGGAFFALGNV 178 (334)
Q Consensus 99 ~hg~dGlg~~~~~~~~~~~~~~~a~~~i~~~~~~~p~~vtila~GpLTNlA~al~~~P~~~~~i~~iviMGG~~~~~GN~ 178 (334)
+||.+|||+..+|.+...+.+++|+++|+++++++|++||||++|||||||+|++++|++.++||+||||||++..+||+
T Consensus 78 ~hG~~Glg~~~~p~~~~~~~~~~A~~~i~~~~~~~~~~vtiva~GpLTNlA~al~~~P~i~~~i~~iviMGG~~~~~GN~ 157 (311)
T 3t8j_A 78 VHGKGGIGDVTVEPKRLKAQEKHAALAIIDLANEYAGELEFLAISPLTNLALAYLLDNSIVKKIKKVWVMGGAVFGIGNI 157 (311)
T ss_dssp HHCTTSSSSCCCCCSSCCCCSSCHHHHHHHHHHHTTTTEEEEECSCSHHHHHHHHHCTTHHHHEEEEEEECCCTTSCCSS
T ss_pred hcCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHChHHHhhcCEEEEcCCcccCCCCC
Confidence 99999999999988877778899999999999999999999999999999999999999999999999999999889999
Q ss_pred CccccccccCCHHHHHHHHHcCCcEEEEeccccceeecCHHHHHHHHhcCCcHHHHHHHHHHHHHHhccccCCCcccccc
Q 019923 179 NPAAEANIYGDPEAADVVFTSGANIAVVGINITTQVKLTDADFLELRQSKGRYVQLLGDMCKFYRDWHVKSDGVHGIFLH 258 (334)
Q Consensus 179 ~~~aEfN~~~DPeAA~~Vl~s~~~i~~v~ldvt~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~ 258 (334)
+|.||||||+|||||++||+|++|++|+|||+|++..+++++++++.+.+++.++|+.+++++|..++.+.++..++++|
T Consensus 158 tp~aEfN~~~DPeAA~~V~~sg~~i~~v~ldvt~~~~lt~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~lh 237 (311)
T 3t8j_A 158 TPVAEFNIWVDPDAAKIVFNAGFDITMIPWDVIINYPVTDEEWNVIKNMKTRMSELYVSMYLHYRQYSSTVQKINGHPHP 237 (311)
T ss_dssp SSSCCHHHHHCHHHHHHHHHTTCCEEEECHHHHTTSCBCHHHHHHHHTSCSHHHHHHHHHHHHHHHHHHHTSCCSSBCCH
T ss_pred CchhhhccccCHHHHHHHHhCCCCEEEecccccccccCCHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhhcCCCCCcCc
Confidence 99999999999999999999999999999999988888999999999888899999999999999887766777899999
Q ss_pred hHHHHHHHhcCCcee-eEEeeEEEEecC-CcceeEEEecCCcccccCCCCCCCCCcEEEeecCHHHHHHHHHHHHhc
Q 019923 259 DPVSFVALVRPDLFT-FKKGVVRVETQG-ICMGHTLMDQGLKRWNVSNPWTGYSPVSVAWTVNVDKVLNYIKRLLMK 333 (334)
Q Consensus 259 D~la~a~~~~p~l~~-~~~~~v~V~~~g-~~~G~tv~d~~~~~~~~~~~~~~~~~v~v~~~vD~~~f~~~l~~~l~~ 333 (334)
|++|++++++|++|+ .++.+++||++| .+||+|++|+... ...+.+.+|++|++++|.++|+++|+++|.+
T Consensus 238 D~lava~~l~P~l~~~~~~~~v~Ve~~g~~t~G~tv~d~~~~----~~~~~~~~n~~v~~~vD~~~f~~~~~~~l~~ 310 (311)
T 3t8j_A 238 DAITTAIAIDGSIATRREKRFVVIDNTDNITRGMTLVDRFDA----DTSWSDKPNAEIVYEINKKSFMEKIYDLLNW 310 (311)
T ss_dssp HHHHHHHHHCGGGEEEEEEEEEEECCSSSTTTTCEEEECSCS----SSCSCSSCCEEEEEEECHHHHHHHHHHHHTC
T ss_pred CHHHHHHHhCHHHhhccceeeEEEecCCCCCCceEEEecCCC----cccCCCCCCEEEeeccCHHHHHHHHHHHHhh
Confidence 999999999999997 589999999986 7999999997531 0113356799999999999999999999864
No 2
>1q8f_A Pyrimidine nucleoside hydrolase; open alpha-beta structure, NH-fold; 1.70A {Escherichia coli} SCOP: c.70.1.1 PDB: 3b9x_A* 3mkn_A* 3mkm_A*
Probab=100.00 E-value=4e-81 Score=590.79 Aligned_cols=306 Identities=29% Similarity=0.519 Sum_probs=284.7
Q ss_pred CCceEEEecCCCchHHHHHHHHHcCCCCeEEEEEEecCCCChHHHHHHHHHHHHHhCCCCCCeeeCCCCCCCCCCCcccc
Q 019923 18 NPAKLIIDTDPGIDDSMTILMAFQTPELEILGLTTIFGNVTTEDATRNALTLCEMAGCPGVPVAEGSPEPLKGGKPRVAE 97 (334)
Q Consensus 18 ~~~~viiDtD~G~DD~~AL~~~l~~p~i~v~gIt~v~Gn~~~~~~~~na~~ll~~~g~~~IPV~~Ga~~pl~~~~~~~~~ 97 (334)
+++|||||||+|+||++||+|||++|+++|+|||+++||++.+++++|++++|+. |+.+||||+|+.+||.++. ..+.
T Consensus 2 ~~~~vIiDtD~GiDDa~Al~~al~~p~i~l~gIt~v~GN~~~~~~~~na~~ll~~-g~~dIPV~~Ga~~pl~~~~-~~a~ 79 (313)
T 1q8f_A 2 EKRKIILDCDPGHDDAIAIMMAAKHPAIDLLGITIVAGNQTLDKTLINGLNVCQK-LEINVPVYAGMPQPIMRQQ-IVAD 79 (313)
T ss_dssp -CEEEEEEECCCHHHHHHHHHHHHCTTEEEEEEEECSSSSCHHHHHHHHHHHHHH-TTCCCCEEECCSSCSSSCC-CCCH
T ss_pred CCceEEEECCCChHHHHHHHHHHhCCCCEEEEEEEccCCCCHHHHHHHHHHHHHc-CCCCCCEEeCCCccccCCC-CCcc
Confidence 3679999999999999999999999999999999999999999999999999999 9999999999999998764 4567
Q ss_pred cccCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHcCCCceEEEEecchhHHHHHHhhCcchHhccceEEEecCCCCCCCC
Q 019923 98 FAHGSDGMGNISLTPPKAKKCDKNASEFLVDKVSEYPGEVSILALGPLTNLALAIKRDSSFASKVKNIVVLGGAFFALGN 177 (334)
Q Consensus 98 ~~hg~dGlg~~~~~~~~~~~~~~~a~~~i~~~~~~~p~~vtila~GpLTNlA~al~~~P~~~~~i~~iviMGG~~~~~GN 177 (334)
++||.+|||+..+|++...+.+.+|+++|+++++++|++||||++|||||||+||+++|++.++||+||||||++.. ||
T Consensus 80 ~~hG~~Glg~~~~p~~~~~~~~~~A~~~i~~~~~~~~~~vtiva~GPLTNlA~al~~~P~i~~~i~~iviMGG~~~~-GN 158 (313)
T 1q8f_A 80 NIHGDTGLDGPVFEPLTRQAESTHAVKYIIDTLMASDGDITLVPVGPLSNIAVAMRMQPAILPKIREIVLMGGAYGT-GN 158 (313)
T ss_dssp HHHCTTSSCSCCCCCCCCCCCSSCHHHHHHHHHHHSCSCEEEEECSCSHHHHHHHHHCGGGGGGEEEEEEECCCSSC-CS
T ss_pred ccCCCcCCCCCCCCCCccCCCCCcHHHHHHHHHHhCCCCEEEEEeccHHHHHHHHHHCHHHHHhCCEEEEECCCCCC-CC
Confidence 89999999999998887777789999999999999999999999999999999999999999999999999999975 99
Q ss_pred CCccccccccCCHHHHHHHHHcCCcEEEEeccccceeecCHHHHHHHHhcCCcHHHHHHHHHHHHHHhccccCCCccccc
Q 019923 178 VNPAAEANIYGDPEAADVVFTSGANIAVVGINITTQVKLTDADFLELRQSKGRYVQLLGDMCKFYRDWHVKSDGVHGIFL 257 (334)
Q Consensus 178 ~~~~aEfN~~~DPeAA~~Vl~s~~~i~~v~ldvt~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l 257 (334)
++|.||||||+|||||++||+|++|++|+|||+|+++.+++++++++.+.+++.++|+.+++++|.+++.+.++..++++
T Consensus 159 ~tp~aEfN~~~DPeAA~~V~~s~~~i~~v~ldvt~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~l 238 (313)
T 1q8f_A 159 FTPSAEFNIFADPEAARVVFTSGVPLVMMGLDLTNQTVCTPDVIARMERAGGPAGELFSDIMNFTLKTQFENYGLAGGPV 238 (313)
T ss_dssp SSSSCCHHHHTCHHHHHHHHTSCSCEEEECHHHHGGGEECHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCSSEEC
T ss_pred CCchhHHhhccCHHHHHHHHhCCCCEEEeChhhhhcccCCHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhccCcCCCcc
Confidence 99999999999999999999999999999999999999999999999888889999999999999988766556678999
Q ss_pred chHHHHHHHhcCCceeeEEeeEEEEecC-CcceeEEEecCCcccccCCCCCCCCCcEEEeecCHHHHHHHHHHHHhc
Q 019923 258 HDPVSFVALVRPDLFTFKKGVVRVETQG-ICMGHTLMDQGLKRWNVSNPWTGYSPVSVAWTVNVDKVLNYIKRLLMK 333 (334)
Q Consensus 258 ~D~la~a~~~~p~l~~~~~~~v~V~~~g-~~~G~tv~d~~~~~~~~~~~~~~~~~v~v~~~vD~~~f~~~l~~~l~~ 333 (334)
||++|++++++|++|++++.+++|+++| .+||+|+.|.... +...+|++|++++|.++|+++|+++|.+
T Consensus 239 hD~lava~~~~p~~~~~~~~~v~Ve~~g~~t~G~tv~d~~~~-------~~~~~n~~v~~~vD~~~f~~~~~~~l~~ 308 (313)
T 1q8f_A 239 HDATCIGYLINPDGIKTQEMYVEVDVNSGPCYGRTVCDELGV-------LGKPANTKVGITIDTDWFWGLVEECVRG 308 (313)
T ss_dssp TTHHHHHHHHCGGGEEEEEECEEECCCSSTTTTCEEECTTCT-------TCCCCCEEEEEEECHHHHHHHHHHHHHT
T ss_pred chHHHHHHHcCcceeEEEEEEEEEEeCCCCCCCeEEEecccc-------CCCCCCEEEEEecCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999986 7999999996421 2346799999999999999999999874
No 3
>2mas_A Inosine-uridine nucleoside N-ribohydrolase; purine nucleoside hydrolase, IU-NH, purine nucleosidase; HET: PIR; 2.30A {Crithidia fasciculata} SCOP: c.70.1.1 PDB: 1mas_A* 1ezr_A
Probab=100.00 E-value=1.3e-80 Score=587.71 Aligned_cols=305 Identities=29% Similarity=0.501 Sum_probs=284.5
Q ss_pred ceEEEecCCCchHHHHHHHHHcCCCCeEEEEEEecCCCChHHHHHHHHHHHHHhCCCCCCeeeCCCCCCCCCCCcccccc
Q 019923 20 AKLIIDTDPGIDDSMTILMAFQTPELEILGLTTIFGNVTTEDATRNALTLCEMAGCPGVPVAEGSPEPLKGGKPRVAEFA 99 (334)
Q Consensus 20 ~~viiDtD~G~DD~~AL~~~l~~p~i~v~gIt~v~Gn~~~~~~~~na~~ll~~~g~~~IPV~~Ga~~pl~~~~~~~~~~~ 99 (334)
+|||||||+|+||++||+|||++|+++|+|||+++||++.+++++|++++|+.+|+.+||||+|+.+||.++. ..++++
T Consensus 2 ~~vIiDtD~GiDDa~AL~~al~~p~i~l~gIt~v~GN~~~~~~~~na~~ll~~~g~~dIPV~~Ga~~pl~~~~-~~a~~~ 80 (314)
T 2mas_A 2 KKIILDCDPGLDDAVAILLAHGNPEIELLAITTVVGNQTLAKVTRNAQLVADIAGITGVPIAAGCDKPLVRKI-MTAGHI 80 (314)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHCTTEEEEEEEECSSSSCHHHHHHHHHHHHHHTTCCSCCEEECCSSCSSSCC-CCCHHH
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCEEEEEEEccCCcCHHHHHHHHHHHHHHhCCCCCCEEeCCCcccCCCC-CCcccc
Confidence 6899999999999999999999999999999999999999999999999999999999999999999998864 456789
Q ss_pred cCCCCCCCCCCCCCCCC-CCCccHHHHHHHHHHc-CCCceEEEEecchhHHHHHHhhCcchHhccceEEEecCCCCCCCC
Q 019923 100 HGSDGMGNISLTPPKAK-KCDKNASEFLVDKVSE-YPGEVSILALGPLTNLALAIKRDSSFASKVKNIVVLGGAFFALGN 177 (334)
Q Consensus 100 hg~dGlg~~~~~~~~~~-~~~~~a~~~i~~~~~~-~p~~vtila~GpLTNlA~al~~~P~~~~~i~~iviMGG~~~~~GN 177 (334)
||.+|||+..+|.+... +.+.+|+++|++++++ +|++||||++|||||||+||+++|++.++||+||||||++ ..||
T Consensus 81 hG~~Glg~~~~p~~~~~~~~~~~A~~~i~~~~~~~~~~~vtiva~GPLTNlA~al~~~P~i~~~i~~iviMGG~~-~~GN 159 (314)
T 2mas_A 81 HGESGMGTVAYPAEFKNKVDERHAVNLIIDLVMSHEPKTITLVPTGGLTNIAMAARLEPRIVDRVKEVVLMGGGY-HEGN 159 (314)
T ss_dssp HCSSSSTTCCCCSSCSSCBCSSCHHHHHHHHHHHSCTTCEEEEECSCSHHHHHHHHHCTHHHHHSCEEEEECCCS-SCCS
T ss_pred CCCCCCCCCCCCCccccccCCccHHHHHHHHHHhhCCCCEEEEEeccHHHHHHHHHHChhHHhhCCEEEEeCCcc-cCCC
Confidence 99999999999887766 6788999999999999 8999999999999999999999999999999999999999 5799
Q ss_pred CCccccccccCCHHHHHHHHHcCCcEEEEeccccceeecCHHHHHHHHhcCCcHHHHHHHHHHHHHHhccccCCCccccc
Q 019923 178 VNPAAEANIYGDPEAADVVFTSGANIAVVGINITTQVKLTDADFLELRQSKGRYVQLLGDMCKFYRDWHVKSDGVHGIFL 257 (334)
Q Consensus 178 ~~~~aEfN~~~DPeAA~~Vl~s~~~i~~v~ldvt~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l 257 (334)
++|.||||||+|||||++||+|++|++|+|||+|+++.+++++++++.+.+++.++|+.+++++|.+++++.++..++++
T Consensus 160 ~tp~aEfN~~~DPeAA~~V~~s~~~i~~v~ldvt~~~~~t~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l 239 (314)
T 2mas_A 160 ATSVAEFNIIIDPEAAHIVFNESWQVTMVGLDLTHQALATPPILQRVKEVDTNPARFMLEIMDYYTKIYQSNRYMAAAAV 239 (314)
T ss_dssp SSSSCCHHHHTCHHHHHHHHHSSSCEEEECHHHHTTCEECHHHHHHHHTTCSHHHHHHHHHHHHHHHHHHSTTCCSSEEC
T ss_pred CCchhHHHhhcCHHHHHHHHhCCCCEEEeChhhhcccccCHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhccCCCCCcC
Confidence 99999999999999999999999999999999999999999999999988889999999999999988876566678999
Q ss_pred chHHHHHHHhcCCceeeEEeeEEEEecC-CcceeEEEecCCcccccCCCCCCCCCcEEEeecCHHHHHHHHHHHHhc
Q 019923 258 HDPVSFVALVRPDLFTFKKGVVRVETQG-ICMGHTLMDQGLKRWNVSNPWTGYSPVSVAWTVNVDKVLNYIKRLLMK 333 (334)
Q Consensus 258 ~D~la~a~~~~p~l~~~~~~~v~V~~~g-~~~G~tv~d~~~~~~~~~~~~~~~~~v~v~~~vD~~~f~~~l~~~l~~ 333 (334)
||++|++++++|++|++++.+++|+++| .+||+|+.|+... +...+|++|++++|.++|+++|+++|.+
T Consensus 240 hD~lava~~~~p~~~~~~~~~v~Ve~~g~~t~G~tv~d~~~~-------~~~~~~~~v~~~vD~~~f~~~~~~~l~~ 309 (314)
T 2mas_A 240 HDPCAVAYVIDPSVMTTERVPVDIELTGKLTLGMTVADFRNP-------RPEHCHTQVAVKLDFEKFWGLVLDALER 309 (314)
T ss_dssp CHHHHHHHHHCGGGEEEEECCEEECSSCSSCTTCEEECCCSS-------CCSSCSEEEEEEECHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHcChhheEEEEEeEEEEeCCCCCCceEEEecccc-------CCCCCCEEEEeecCHHHHHHHHHHHHHh
Confidence 9999999999999999999999999997 5999999996432 1245799999999999999999999864
No 4
>1yoe_A Hypothetical protein YBEK; pyrimidine nucleoside hydrolase, bacterial nucleosidase, RIB enzyme-product complex, hydrolase; HET: RIB; 1.78A {Escherichia coli} PDB: 3g5i_A*
Probab=100.00 E-value=1.5e-80 Score=588.87 Aligned_cols=308 Identities=31% Similarity=0.509 Sum_probs=279.7
Q ss_pred CCCceEEEecCCCchHHHHHHHHHcCCCCeEEEEEEecCCCChHHHHHHHHHHHHHhCCCCCCeeeCCCCCCCCCCCccc
Q 019923 17 TNPAKLIIDTDPGIDDSMTILMAFQTPELEILGLTTIFGNVTTEDATRNALTLCEMAGCPGVPVAEGSPEPLKGGKPRVA 96 (334)
Q Consensus 17 ~~~~~viiDtD~G~DD~~AL~~~l~~p~i~v~gIt~v~Gn~~~~~~~~na~~ll~~~g~~~IPV~~Ga~~pl~~~~~~~~ 96 (334)
-..+|||||||+|+||++||+|||++|+++|+|||+++||++.+++++|++++|+.+|+.+||||+|+..||.++. ..+
T Consensus 11 ~~~~~viiD~D~GiDDa~AL~~al~~p~i~l~gIttv~GN~~~~~~~~Na~~ll~~~g~~dIPV~~Ga~~Pl~~~~-~~a 89 (322)
T 1yoe_A 11 GSALPILLDCDPGHDDAIAIVLALASPELDVKAITSSAGNQTPEKTLRNVLRMLTLLNRTDIPVAGGAVKPLMREL-IIA 89 (322)
T ss_dssp CCCEEEEEEECCSHHHHHHHHHHHTCTTEEEEEEEECSSSSCHHHHHHHHHHHHHHTTCTTSCEEECCSSCSSSCC-CCC
T ss_pred CCCceEEEECCCCHHHHHHHHHHHhCCCCEEEEEEEcCCCCCHHHHHHHHHHHHHHcCCCCCCEEeCCCccccCCC-ccc
Confidence 3568899999999999999999999999999999999999999999999999999999999999999999998864 567
Q ss_pred ccccCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHcCCCceEEEEecchhHHHHHHhhCcchHhccceEEEecCCCCCCC
Q 019923 97 EFAHGSDGMGNISLTPPKAKKCDKNASEFLVDKVSEYPGEVSILALGPLTNLALAIKRDSSFASKVKNIVVLGGAFFALG 176 (334)
Q Consensus 97 ~~~hg~dGlg~~~~~~~~~~~~~~~a~~~i~~~~~~~p~~vtila~GpLTNlA~al~~~P~~~~~i~~iviMGG~~~~~G 176 (334)
.++||++|||+..+|+|...+.+.+|+++|+++++++|++||||++|||||||+||+++|++.++||+||+|||++. .|
T Consensus 90 ~~~HG~~Glg~~~~p~~~~~~~~~~Av~~i~~~l~~~p~~vtiva~GPLTNlA~al~~~P~i~~~i~~iviMGGa~~-~G 168 (322)
T 1yoe_A 90 DNVHGESGLDGPALPEPTFAPQNCTAVELMAKTLRESAEPVTIVSTGPQTNVALLLNSHPELHSKIARIVIMGGAMG-LG 168 (322)
T ss_dssp -----CCSSCSSCCCCCSSCCCSSCHHHHHHHHHHHCSSCEEEEECSCSHHHHHHHHHCGGGGGGEEEEEEECCCSS-CC
T ss_pred cccCCCCCCCCcCCCCCcCCCCcchHHHHHHHHHHhCCCCEEEEEeccHHHHHHHHHHChHHHhhCCEEEEeCCCCC-CC
Confidence 78999999999999988888888999999999999999999999999999999999999999999999999999985 79
Q ss_pred CCCccccccccCCHHHHHHHHHcCCcEEEEeccccceeecCHHHHHHHHhcCCcHHHHHHHHHHHHHHhc-cccCCCccc
Q 019923 177 NVNPAAEANIYGDPEAADVVFTSGANIAVVGINITTQVKLTDADFLELRQSKGRYVQLLGDMCKFYRDWH-VKSDGVHGI 255 (334)
Q Consensus 177 N~~~~aEfN~~~DPeAA~~Vl~s~~~i~~v~ldvt~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~ 255 (334)
|++|.||||||+|||||++||+|++|++|+|||+|+++.+++++++++.+.+++.++|+.+++++|.+++ .+.++..++
T Consensus 169 N~tp~AEfN~~~DPeAA~~V~~s~~~i~~v~ldvt~~~~~t~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 248 (322)
T 1yoe_A 169 NWTPAAEFNIYVDPEAAEIVFQSGIPVVMAGLDVTHKAQIHVEDTERFRAIGNPVSTIVAELLDFFLEYHKDEKWGFVGA 248 (322)
T ss_dssp SSSSSCCHHHHHCHHHHHHHHTSSSCEEEECHHHHTTSEECHHHHHHHHHHCSHHHHHHHHHHHHHHC-----CCCCSSE
T ss_pred CCCcccHhhcccCHHHHHHHHhCCCCEEEECccccccccCCHHHHHHHHhhCCcHHHHHHHHHHHHHHHHhhcccCCCCC
Confidence 9999999999999999999999999999999999999999999999998888899999999999998854 334556789
Q ss_pred ccchHHHHHHHhcCCceeeEEeeEEEEecC-CcceeEEEecCCcccccCCCCCCCCCcEEEeecCHHHHHHHHHHHHhc
Q 019923 256 FLHDPVSFVALVRPDLFTFKKGVVRVETQG-ICMGHTLMDQGLKRWNVSNPWTGYSPVSVAWTVNVDKVLNYIKRLLMK 333 (334)
Q Consensus 256 ~l~D~la~a~~~~p~l~~~~~~~v~V~~~g-~~~G~tv~d~~~~~~~~~~~~~~~~~v~v~~~vD~~~f~~~l~~~l~~ 333 (334)
++||++|++++++|++|++++.+++|+++| .+||+|++|.... +...+|++|++++|.++|+++|+++|.+
T Consensus 249 ~lhD~lava~~~~P~~~~~~~~~v~Ve~~g~~t~G~tv~d~~~~-------~~~~~n~~v~~~vD~~~f~~~~~~~l~~ 320 (322)
T 1yoe_A 249 PLHDPCTIAWLLKPELFTSVERWVGVETQGKYTQGMTVVDYYYL-------TGNKPNATVMVDVDRQGFVDLLADRLKF 320 (322)
T ss_dssp ECCTHHHHHHHHCGGGEEEEEECEEECCSCSSCTTCEEECTTCC-------SSCCCCEEEEEEECHHHHHHHHHHHHGG
T ss_pred ccccHHHhhheecccceEEEEEEEEEEeCCCCCCceEEEecccc-------CCCCCCeEEEeecCHHHHHHHHHHHHHh
Confidence 999999999999999999999999999996 7999999997431 2246799999999999999999999864
No 5
>3t8i_A Purine nucleosidase, (IUNH-2); purine nucleoside hydrolase, thermostable protein, open (ALP structure, rossmann fold, NH-fold; 1.80A {Sulfolobus solfataricus}
Probab=100.00 E-value=1.2e-79 Score=577.02 Aligned_cols=304 Identities=30% Similarity=0.440 Sum_probs=282.3
Q ss_pred CceEEEecCCCchHHHHHHHHHcCCCCeEEEEEEecCCCChHHHHHHHHHHHHHhCCCCCCeeeCCCCCCCCCCCccccc
Q 019923 19 PAKLIIDTDPGIDDSMTILMAFQTPELEILGLTTIFGNVTTEDATRNALTLCEMAGCPGVPVAEGSPEPLKGGKPRVAEF 98 (334)
Q Consensus 19 ~~~viiDtD~G~DD~~AL~~~l~~p~i~v~gIt~v~Gn~~~~~~~~na~~ll~~~g~~~IPV~~Ga~~pl~~~~~~~~~~ 98 (334)
++|||||||+|+||++||++++ ++++|+|||+++||++.+++++|++++|+.+|+.+||||+|+.+||.++. ..+++
T Consensus 1 M~kvIiD~D~G~DDa~Allla~--~~~~l~gIt~v~GN~~~~~~~~na~~~l~~~g~~diPV~~Ga~~pl~~~~-~~~~~ 77 (306)
T 3t8i_A 1 MRKVIVDSDTATDDTIAILLAS--RFFQLLGVTIVAGNVNYNQEVKNALFTLEYIGKQDVPVYLGSQRPILGNW-RTVEE 77 (306)
T ss_dssp CCEEEEEECCSTHHHHHHHHHH--HHSEEEEEEECSSSSCHHHHHHHHHHHHHHTTCTTSCEEECCSSCTTCCC-CCCHH
T ss_pred CcEEEEECCCChHHHHHHHHhC--CCCEEEEEEEccCCCCHHHHHHHHHHHHHhcCCCCCcEEEcCCccCCCCC-ccccc
Confidence 5799999999999999997665 48999999999999999999999999999999999999999999998864 45778
Q ss_pred ccCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHcCCCceEEEEecchhHHHHHHhhCcchHhccceEEEecCCCCCCCCC
Q 019923 99 AHGSDGMGNISLTPPKAKKCDKNASEFLVDKVSEYPGEVSILALGPLTNLALAIKRDSSFASKVKNIVVLGGAFFALGNV 178 (334)
Q Consensus 99 ~hg~dGlg~~~~~~~~~~~~~~~a~~~i~~~~~~~p~~vtila~GpLTNlA~al~~~P~~~~~i~~iviMGG~~~~~GN~ 178 (334)
+||++|||+..+|.+...+.+++|+++|+++++++|++|||+++|||||||+||+++|++.++||+||+|||++ .+||+
T Consensus 78 ~hG~~Glg~~~~p~~~~~~~~~~A~~~i~~~~~~~~~~vtiva~GpLTNlA~al~~~P~i~~~i~~iviMGG~~-~~GN~ 156 (306)
T 3t8i_A 78 VHGSNGMSNWNYPEPNKRPEKEHAIDAILRLSKEHEGELEILAISPLTNIALAYLKDPSVVKRVKKIWIMGGAF-SKGNT 156 (306)
T ss_dssp HHCTTSSTTCCCCCCSCCCCSSCHHHHHHHHHHHTTTTEEEEECSCSHHHHHHHHHCGGGGGTCCEEEEECCCS-SCCSS
T ss_pred ccCCCCCCccCCCCccCCcCCccHHHHHHHHHHhCCCCEEEEEecChHHHHHHHHHChhHHhhcCEEEEecCCC-CCCCC
Confidence 99999999999998887778899999999999999999999999999999999999999999999999999997 58999
Q ss_pred CccccccccCCHHHHHHHHHcCCcEEEEecccccee-ecCHHHHHHHHhcCCcHHHHHHHHHHHHHHhccccCCCccccc
Q 019923 179 NPAAEANIYGDPEAADVVFTSGANIAVVGINITTQV-KLTDADFLELRQSKGRYVQLLGDMCKFYRDWHVKSDGVHGIFL 257 (334)
Q Consensus 179 ~~~aEfN~~~DPeAA~~Vl~s~~~i~~v~ldvt~~~-~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l 257 (334)
+|.||||||+|||||++||+|++|++|+|||+|+++ .+++++++++.+.+++.++|+.+++++|..|+.+.++..++++
T Consensus 157 tp~aEfN~~~DPeAA~~V~~s~~~i~~v~ldvt~~~~~~t~~~~~~l~~~~~~~~~~~~~~~~~y~~~~~~~~g~~g~~~ 236 (306)
T 3t8i_A 157 TPIAEFNFWVDPEAAKIVLDAGFDITIVPWEVAEISGSLNERDWEYISKLNTKLSNFFINVNKTLKEYTTKNQGISGSIH 236 (306)
T ss_dssp SSSCCHHHHHCHHHHHHHHHTTCCEEEECHHHHHHHSEEEHHHHHHHHHHCCHHHHHHHHHTHHHHHHHHHHHSSSEEEC
T ss_pred CCchhhccccCHHHHHHHHhCCCCceEecchhccccccCCHHHHHHHHhhCChHHHHHHHHHHHHHHHHHhhcCCCCCcC
Confidence 999999999999999999999999999999999999 9999999999988899999999999999988776667789999
Q ss_pred chHHHHHHHhcCCce-eeEEeeEEEEecCCcceeEEEecCCcccccCCCCCCCCCcEEEeecCHHHHHHHHHHHHhc
Q 019923 258 HDPVSFVALVRPDLF-TFKKGVVRVETQGICMGHTLMDQGLKRWNVSNPWTGYSPVSVAWTVNVDKVLNYIKRLLMK 333 (334)
Q Consensus 258 ~D~la~a~~~~p~l~-~~~~~~v~V~~~g~~~G~tv~d~~~~~~~~~~~~~~~~~v~v~~~vD~~~f~~~l~~~l~~ 333 (334)
||++|++++++|+++ +.++.+|+||++|.+||+|+.|+... +...+|++|+.++|.++|+++|+++|.+
T Consensus 237 hD~lava~~l~P~l~~~~~~~~v~Ve~~g~t~G~tv~D~~~~-------~~~~~n~~V~~~vD~~~f~~~~~~~l~~ 306 (306)
T 3t8i_A 237 PDSLTVSIAHDNSIILDSSLKYVDVELCSKSRGAMLIDWYSL-------HKNKPNAEIVLKADGGKFKNLLFNSLSQ 306 (306)
T ss_dssp HHHHHHHHHHCGGGEEEEEEECEEECCSGGGTTCEEECTTCC-------SSCCCCEEEEEEECHHHHHHHHHHHHHC
T ss_pred CCHHHhhhhccccceeEEEEEEEEEEECCCCCeeEEeccccc-------CCCCCCeEEEeccCHHHHHHHHHHHhhC
Confidence 999999999999985 57789999999988999999997531 2356799999999999999999999864
No 6
>3fz0_A Nucleoside hydrolase, putative; NH fold, open alpha/beta structure, glycosidase; HET: BTB; 2.50A {Trypanosoma brucei}
Probab=100.00 E-value=1.9e-78 Score=579.26 Aligned_cols=314 Identities=26% Similarity=0.362 Sum_probs=273.1
Q ss_pred CCCCceEEEecCCCchHHHHHHHHHcCCCCeEEEEEEecCCCChHHHHHHHHHHHHHhCCCCCCeeeCCCCCCCCCCCcc
Q 019923 16 STNPAKLIIDTDPGIDDSMTILMAFQTPELEILGLTTIFGNVTTEDATRNALTLCEMAGCPGVPVAEGSPEPLKGGKPRV 95 (334)
Q Consensus 16 ~~~~~~viiDtD~G~DD~~AL~~~l~~p~i~v~gIt~v~Gn~~~~~~~~na~~ll~~~g~~~IPV~~Ga~~pl~~~~~~~ 95 (334)
.+.++|||||||+|+||++||+|||++|+++|+|||+++||++.+++++|++++|+++|+ +||||+|+..||.++ ..
T Consensus 3 ~m~~~kvIiD~D~G~DDa~Al~~al~~p~i~l~gIt~v~GN~~~~~~~~na~~ll~~~g~-dIPV~~Ga~~pl~~~--~~ 79 (360)
T 3fz0_A 3 HMVHRKLIIDTDCGGDDAIAIMLAMTQPDVEVIAITVVWGNVEVNQGMENIGKLLDLYDA-DIPFFRGAEGPLVGE--RE 79 (360)
T ss_dssp --CEEEEEEEECCCHHHHHHHHHHHTSTTEEEEEEEECCSSSCHHHHHHHHHHHHHHHTC-CCCEEECCSSCSSSS--CC
T ss_pred CCCCceEEEECCCChHHHHHHHHHHhCCCCEEEEEEEecCCCCHHHHHHHHHHHHHHcCC-CCCEEEcCCCCCCCC--cc
Confidence 356789999999999999999999999999999999999999999999999999999999 999999999999986 45
Q ss_pred cccc--cCCCCCCCCCCCCCCC--CCCCccHHHHHHHHHHcC-CCc---eEEEEecchhHHHHHHhhCcchHhcc-----
Q 019923 96 AEFA--HGSDGMGNISLTPPKA--KKCDKNASEFLVDKVSEY-PGE---VSILALGPLTNLALAIKRDSSFASKV----- 162 (334)
Q Consensus 96 ~~~~--hg~dGlg~~~~~~~~~--~~~~~~a~~~i~~~~~~~-p~~---vtila~GpLTNlA~al~~~P~~~~~i----- 162 (334)
+.++ ||.+|||+..+|.+.. .+.+++|+++|+++++++ |++ ||||++|||||||+||+++|++.++|
T Consensus 80 ~~~~~~hG~~Glg~~~~p~~~~~~~~~~~~A~~~i~~~~~~~~p~~~~~vtiva~GPLTNlA~al~~~P~~~~~ig~~kv 159 (360)
T 3fz0_A 80 TVQWGGFGSDGFGDAGFPPSQRVALQPKRHAALEILKILEEAEPSDDVVYQLVALGPLTNVALALRLNPDLFSKLGTDTI 159 (360)
T ss_dssp SCCCCTTCTTSSCSCCCCCCSHHHHSCCSCHHHHHHHHHHHCCCCSSEEEEEEECSCSHHHHHHHHHCGGGGGGSSCSSS
T ss_pred hHHHHhhcccCcCcccCCCCccccccCCccHHHHHHHHHHhcCCCCCceEEEEEecChHHHHHHHHhChHHHhhhccccC
Confidence 6778 9999999998877542 345789999999999999 888 99999999999999999999999999
Q ss_pred ceEEEecCCCCCCCCCCccccccccCCHHHHHHHHHc-CC--cEEEEeccccceeecCHHHHHHHHhcCCc-HH------
Q 019923 163 KNIVVLGGAFFALGNVNPAAEANIYGDPEAADVVFTS-GA--NIAVVGINITTQVKLTDADFLELRQSKGR-YV------ 232 (334)
Q Consensus 163 ~~iviMGG~~~~~GN~~~~aEfN~~~DPeAA~~Vl~s-~~--~i~~v~ldvt~~~~~~~~~~~~l~~~~~~-~~------ 232 (334)
|+||||||++..+||++|.+|||||+|||||++||+| |+ |++|+|||+|+++.+++++++++.+..++ .+
T Consensus 160 ~~iviMGG~~~~~GN~tp~aEfN~~~DPeAA~~V~~s~g~~~~i~~v~ldvt~~~~~t~~~~~~~~~~~~~~~~~~~~~~ 239 (360)
T 3fz0_A 160 PGIVIMNGTSESKGNSNMAAEFNSHCDPEAGVVVLQHKGWKCPVQLVNWEVTVNSPMTWGFYDKLVNRESTPNGRVAVNQ 239 (360)
T ss_dssp CSEEEECCCSSCCCSSSSSCCHHHHHCHHHHHHHHHCSCCSSCEEEECHHHHHTSCEEHHHHHHHTTC-----------C
T ss_pred cEEEEECCCccCCCCCCCCcccccCcCHHHHHHHHhCcCCCCCeEEECccceeeeecCHHHHHHHHhcCCCccccccccc
Confidence 9999999999889999999999999999999999999 65 99999999999999999999999876555 56
Q ss_pred ----HHHHHHHHHHHHhcccc-------------CCCcccccchHHHHHHHhcCCcee-eEEeeEEEEecC-CcceeEEE
Q 019923 233 ----QLLGDMCKFYRDWHVKS-------------DGVHGIFLHDPVSFVALVRPDLFT-FKKGVVRVETQG-ICMGHTLM 293 (334)
Q Consensus 233 ----~~l~~~~~~~~~~~~~~-------------~~~~~~~l~D~la~a~~~~p~l~~-~~~~~v~V~~~g-~~~G~tv~ 293 (334)
+|+.+++++|..|++.. .+..++++||++|++++++|++|+ .++.+|+||++| .+||+|++
T Consensus 240 ~~~~~~~~~~~~~y~~~~~~~~~~~~~~~g~~~~~g~~~~~lHD~lava~~l~P~l~~~~~~~~V~Ve~~g~~trG~Tv~ 319 (360)
T 3fz0_A 240 NKWQEFIEKLFQRLEAFTRIHDDGTRADTGDAEATQDVTCVVPDAVAVLVAIRPESVLDSFLTYVTVELHGRETRGATCI 319 (360)
T ss_dssp CHHHHHHHHHHHHHHHHHC------------------CEECCHHHHHHHHHHCGGGEEEEEEECEEECSSCSSCTTCEEE
T ss_pred chHHHHHHHHHHHHHHHHhhhccccccccccccccCcCCCccccHHHHHHHhChhheeeEEEEEEEEEeCCCCcceEEEe
Confidence 99999999998876532 234557999999999999999996 688999999998 69999999
Q ss_pred ecCCcccccCCCCCCCCCcEEEeecCHHHHHHHHHHHHhc
Q 019923 294 DQGLKRWNVSNPWTGYSPVSVAWTVNVDKVLNYIKRLLMK 333 (334)
Q Consensus 294 d~~~~~~~~~~~~~~~~~v~v~~~vD~~~f~~~l~~~l~~ 333 (334)
|+... |.....+.+.+|++|++++|.++|+++|+++|..
T Consensus 320 D~~~~-~~~~~~~~~~~n~~V~~~vD~~~f~~~~~~~l~~ 358 (360)
T 3fz0_A 320 DWYGT-EQSMAKKGRWRNCNVITKVDNEMFLKALRDIVEY 358 (360)
T ss_dssp CSSCC-HHHHHHTTCCCCEEEEEEECHHHHHHHHHHHHTC
T ss_pred ccccc-cCcccccCCCCCeEEeEecCHHHHHHHHHHHhcc
Confidence 97532 1100001123899999999999999999999864
No 7
>2c40_A Inosine-uridine preferring nucleoside hydrolase F protein; spine; 2.2A {Bacillus anthracis}
Probab=100.00 E-value=2.6e-75 Score=551.47 Aligned_cols=301 Identities=24% Similarity=0.306 Sum_probs=258.5
Q ss_pred CceEEEecCCCchHHHHHHHHHcCCCCeEEEEEEecCCCChHHHHHHHHHHHHHhCCCCCCeeeCCCCCCCCCCCccccc
Q 019923 19 PAKLIIDTDPGIDDSMTILMAFQTPELEILGLTTIFGNVTTEDATRNALTLCEMAGCPGVPVAEGSPEPLKGGKPRVAEF 98 (334)
Q Consensus 19 ~~~viiDtD~G~DD~~AL~~~l~~p~i~v~gIt~v~Gn~~~~~~~~na~~ll~~~g~~~IPV~~Ga~~pl~~~~~~~~~~ 98 (334)
++|||||||+|+||++||+|||++|+++|+|||+++||++.+++++|++++|+++|+.+||||+|+.+||... .....
T Consensus 1 m~kvIiDtD~GiDDa~Al~~al~~p~i~l~gIt~v~GN~~~~~~~~na~~ll~~~g~~dIPV~~Ga~~pl~~~--~~~~~ 78 (312)
T 2c40_A 1 MKKVYFNHDGGVDDLVSLFLLLQMDNVELTGVSVIPADCYLEPAMSASRKIIDRFGKNTIEVAASNSRGKNPF--PKDWR 78 (312)
T ss_dssp CEEEEEEECCSHHHHHHHHHHTTCTTEEEEEEEECSSSSCHHHHHHHHHHHHHHHCCSCCCEEECCCCCSSCC--CHHHH
T ss_pred CCEEEEECCCChHHHHHHHHHHhCCCCEEEEEEEecCCCcHHHHHHHHHHHHHHcCCCCCCEecCCCccccCC--Ccccc
Confidence 4799999999999999999999999999999999999999999999999999999999999999999999652 12334
Q ss_pred ccCC--CCCCCCCCCCC-CCCCCCccHHHHHHHHHHcCCCceEEEEecchhHHHHHHhhCcchHhccceEEEecCCCCCC
Q 019923 99 AHGS--DGMGNISLTPP-KAKKCDKNASEFLVDKVSEYPGEVSILALGPLTNLALAIKRDSSFASKVKNIVVLGGAFFAL 175 (334)
Q Consensus 99 ~hg~--dGlg~~~~~~~-~~~~~~~~a~~~i~~~~~~~p~~vtila~GpLTNlA~al~~~P~~~~~i~~iviMGG~~~~~ 175 (334)
.||. +|++....+.+ .....+.+|+++|+++++++|++||||++|||||||+||+++|++.++||+||||||++..+
T Consensus 79 ~~~~~~~g~~~~~~~~~~~~~~~~~~A~~~i~~~~~~~~~~vtiva~GPLTNlA~al~~~P~i~~~i~~iviMGGa~~~~ 158 (312)
T 2c40_A 79 MHAFYVDALPILNESGKVVTHVAAKPAHHHLIETLLQTEEKTTLLFTGPLTDLARALYEAPIIENKIKRLVWMGGTFRTA 158 (312)
T ss_dssp THHHHHHTCHHHHTTSCCCSCBCSSCHHHHHHHHHHHSSSCEEEEESSCSHHHHHHHHHCGGGGGGEEEEEEECCCCSSC
T ss_pred cccccCCCcccCCCCCcccCCCCCccHHHHHHHHHHhCCCCEEEEEcCcHHHHHHHHHHChhHHhhcCEEEEeCCcccCC
Confidence 5664 56543223322 23345789999999999999999999999999999999999999999999999999999888
Q ss_pred CCCC-----ccccccccCCHHHHHHHHHcCCcEEEEeccccceeecCHHHHHHHHhcC-CcHHHHHHHHHHHHHHhcccc
Q 019923 176 GNVN-----PAAEANIYGDPEAADVVFTSGANIAVVGINITTQVKLTDADFLELRQSK-GRYVQLLGDMCKFYRDWHVKS 249 (334)
Q Consensus 176 GN~~-----~~aEfN~~~DPeAA~~Vl~s~~~i~~v~ldvt~~~~~~~~~~~~l~~~~-~~~~~~l~~~~~~~~~~~~~~ 249 (334)
||++ |.||||||+|||||++||+|++|++|+|||+|+++.+++++++++.+.+ ++..+|+.++++.|..+ ...
T Consensus 159 GN~t~p~~~p~aEfN~~~DPeAA~~V~~s~~~i~~v~ldvt~~~~~t~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~ 237 (312)
T 2c40_A 159 GNVHEPEHDGTAEWNSFWDPEAVARVWEANIEIDLITLESTNQVPLTIDIREQWAKERKYIGIDFLGQCYAIVPPL-VHF 237 (312)
T ss_dssp CSCCCTTCCSCCCHHHHHCHHHHHHHHHSSCCEEEECGGGGTTCBCCHHHHHHHHHTTTSHHHHHHHHHHHTSCCC----
T ss_pred CCccCCCCCCcchhhhccCHHHHHHHHcCCCCEEEEccccccceecCHHHHHHHHhcCCChHHHHHHHHHHhhhhh-hhh
Confidence 9998 8999999999999999999999999999999999999999999998765 47888887765543110 010
Q ss_pred CCCcccccchHHHHHHHhcCCceeeEEeeEEEEecCCcceeEEEecCCcccccCCCCCCCCCcEEEeecCHHHHHHHHHH
Q 019923 250 DGVHGIFLHDPVSFVALVRPDLFTFKKGVVRVETQGICMGHTLMDQGLKRWNVSNPWTGYSPVSVAWTVNVDKVLNYIKR 329 (334)
Q Consensus 250 ~~~~~~~l~D~la~a~~~~p~l~~~~~~~v~V~~~g~~~G~tv~d~~~~~~~~~~~~~~~~~v~v~~~vD~~~f~~~l~~ 329 (334)
....++++||++|++++++|++|++++.+++|+++|.+||+|+.|.. +++++|++++|.++|+++|++
T Consensus 238 ~~~~~~~lhD~lava~~~~p~l~~~~~~~v~V~~~g~~~G~tv~d~~------------~~~~~v~~~vD~~~f~~~~~~ 305 (312)
T 2c40_A 238 AKNSTYYLWDVLTAAFVGKADLAKVQTINSIVHTYGPSQGRTVETDD------------GRPVHVVYDVNHDRFFDYITR 305 (312)
T ss_dssp -----CBCHHHHHHHHHHCGGGSEEEEEEEEECCSSTTTTCEEEEEE------------EEEEEEEECCCHHHHHHHHHH
T ss_pred cccCCCcccCHHHHHHHcCccceeeEEEEEEEEeCCCCCceEEEecC------------CCceEEEeecCHHHHHHHHHH
Confidence 12357899999999999999999999999999999999999999952 246999999999999999999
Q ss_pred HHhcC
Q 019923 330 LLMKQ 334 (334)
Q Consensus 330 ~l~~~ 334 (334)
+|.+.
T Consensus 306 ~l~~~ 310 (312)
T 2c40_A 306 LAKKV 310 (312)
T ss_dssp HHC-C
T ss_pred HHhhc
Confidence 98753
No 8
>3epw_A IAG-nucleoside hydrolase; rossmann fold, active site loops, aromatic stacking; HET: JMQ; 1.30A {Trypanosoma vivax} SCOP: c.70.1.1 PDB: 3epx_A* 1hoz_A 1hp0_A* 2ff1_A* 2ff2_A* 1kic_A* 1kie_A* 1r4f_A* 3b9g_A*
Probab=100.00 E-value=3.2e-74 Score=548.32 Aligned_cols=303 Identities=20% Similarity=0.268 Sum_probs=261.7
Q ss_pred CCCceEEEecCCCchHHHHHHHHHcCCC-CeEEEEEEecCCCChHHHHHHHHHHHHHhCCCC----CCeeeCCCCCCCCC
Q 019923 17 TNPAKLIIDTDPGIDDSMTILMAFQTPE-LEILGLTTIFGNVTTEDATRNALTLCEMAGCPG----VPVAEGSPEPLKGG 91 (334)
Q Consensus 17 ~~~~~viiDtD~G~DD~~AL~~~l~~p~-i~v~gIt~v~Gn~~~~~~~~na~~ll~~~g~~~----IPV~~Ga~~pl~~~ 91 (334)
-..+|||||||+|+||++||+|||++|+ ++|+|||||+||++.+++++|++++|+.+|+.+ ||||+|+.+||...
T Consensus 11 ~~~~~vilD~DpGiDDa~AL~~al~~p~~iel~gITtv~GN~~~~~~~~Nal~lL~~~g~~d~~~~IPV~~Ga~~pl~~~ 90 (338)
T 3epw_A 11 GSAKNVVLDHDGNLDDFVAMVLLASNTEKVRLIGALCTDADCFVENGFNVTGKIMCLMHNNMNLPLFPIGKSAATAVNPF 90 (338)
T ss_dssp --CEEEEEEECCSHHHHHHHHHHHHCTTTEEEEEEEECSSSSCHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCSSCC
T ss_pred CccceEEEECCCChHHHHHHHHHHhCCCCeEEEEEEEeCCCChHHHHHHHHHHHHHHhCCCCCCCccceEeCCCCCCCCC
Confidence 3578999999999999999999999999 999999999999999999999999999999988 99999999999653
Q ss_pred CCcccccccCCCCCCCCC-CCCC---------CCCCCCccHHHHHHHHHHcCCCceEEEEecchhHHHHHHhhC-cchHh
Q 019923 92 KPRVAEFAHGSDGMGNIS-LTPP---------KAKKCDKNASEFLVDKVSEYPGEVSILALGPLTNLALAIKRD-SSFAS 160 (334)
Q Consensus 92 ~~~~~~~~hg~dGlg~~~-~~~~---------~~~~~~~~a~~~i~~~~~~~p~~vtila~GpLTNlA~al~~~-P~~~~ 160 (334)
. .....||. |+++.. ++.| ...+.+.+|+++|+++++++|++||||++|||||||+||+++ |++.+
T Consensus 91 ~--~~~~~~~~-~~~~~~~~~~~g~~~l~~~~~~~~~~~~A~~~i~~~~~~~~~~vtiva~GpLTNlA~al~~~gP~~~~ 167 (338)
T 3epw_A 91 P--KEWRCLAK-NMDDMPILNIPENVELWDKIKAENEKYEGQQLLADLVMNSEEKVTICVTGPLSNVAWCIDKYGEKFTS 167 (338)
T ss_dssp C--HHHHTHHH-HHHTCGGGCCHHHHHHHHHHHHHHHTSBHHHHHHHHHHHCSSCEEEEECSCTHHHHHHHHHHTHHHHT
T ss_pred C--CcceeccC-cCCCCccCCcccccccCCCCCCccCCccHHHHHHHHHHhCCCceEEEECCCchHHHHHHHHcCHHHHH
Confidence 1 12234553 233221 2221 223457899999999999999999999999999999999999 99999
Q ss_pred ccceEEEecCCCCCCCCCC-----ccccccccCCHHHHHHHHH-cCCcEEEEeccccceeecCHHHHHHHHhcC-CcHHH
Q 019923 161 KVKNIVVLGGAFFALGNVN-----PAAEANIYGDPEAADVVFT-SGANIAVVGINITTQVKLTDADFLELRQSK-GRYVQ 233 (334)
Q Consensus 161 ~i~~iviMGG~~~~~GN~~-----~~aEfN~~~DPeAA~~Vl~-s~~~i~~v~ldvt~~~~~~~~~~~~l~~~~-~~~~~ 233 (334)
+||+||||||++..+||++ |.+|||||+|||||++||+ |++|++|+|||+|+++.++++++++|.+.+ ++.++
T Consensus 168 ~i~~iviMGG~~~~~GN~t~~~~~~~aEfN~~~DPeAA~~V~~~sg~~i~~vpLdvT~~~~~t~~~~~~l~~~~~~~~~~ 247 (338)
T 3epw_A 168 KVEECVIMGGAVDVRGNVFLPSTDGTAEWNIYWDPASAKTVFGCPGLRRIMFSLDSTNTVPVRSPYVQRFGEQTNFLLSI 247 (338)
T ss_dssp TEEEEEEECCCSSSCCSCCCTTSCSCCCHHHHHSHHHHHHHHTCTTCCEEEECHHHHTTCBCCHHHHHGGGGGTTSHHHH
T ss_pred hCCEEEEecCCCCCCCCccccCCCCcchhccccCHHHHHHHHhhcCCCEEEeCcccccCccCCHHHHHHHHhhCCCHHHH
Confidence 9999999999998899998 7999999999999999999 999999999999999999999999998754 57899
Q ss_pred HHHHHHHHHHHhccccCCCcccccchHHHHHHHhcCCceeeEEeeEEEEe-cCCcceeEEEecCCcccccCCCCCCCCCc
Q 019923 234 LLGDMCKFYRDWHVKSDGVHGIFLHDPVSFVALVRPDLFTFKKGVVRVET-QGICMGHTLMDQGLKRWNVSNPWTGYSPV 312 (334)
Q Consensus 234 ~l~~~~~~~~~~~~~~~~~~~~~l~D~la~a~~~~p~l~~~~~~~v~V~~-~g~~~G~tv~d~~~~~~~~~~~~~~~~~v 312 (334)
|+.+++..|..+... ....++++||++|++++++|++|++++.+|+|++ .|.+||+|+.|... ..+|+
T Consensus 248 ~~~~~~~~~~~~~~~-~~~~g~~lhDplAva~~l~P~l~~~~~~~v~Ve~~~g~t~G~Tv~d~~~----------~~~n~ 316 (338)
T 3epw_A 248 LVGTMWAMCTHCELL-RDGDGYYAWDALTAAYVVDQKVANVDPVPIDVVVDKQPNEGATVRTDAE----------NYPLT 316 (338)
T ss_dssp HHHHHHHTTTTHHHH-STTCCCBCHHHHHHHHHHCGGGCEEEEEEEEECCSSSTTTTCEEECCCT----------TCCEE
T ss_pred HHHHHHHHHHHHHhh-ccCCCCcCchHHHHHHHcCccceEEEEEEEEEEeCCCCCCceEEEecCC----------CCCce
Confidence 998877665333211 2336789999999999999999999999999999 57999999999642 24689
Q ss_pred EEEeecCHHHHHHHHHHHHhc
Q 019923 313 SVAWTVNVDKVLNYIKRLLMK 333 (334)
Q Consensus 313 ~v~~~vD~~~f~~~l~~~l~~ 333 (334)
+|++++|.++|+++|+++|.+
T Consensus 317 ~V~~~vD~~~F~~~~~~~l~~ 337 (338)
T 3epw_A 317 FVARNPEAEFFLDMLLRSARA 337 (338)
T ss_dssp EEEESCCHHHHHHHHHHHTTC
T ss_pred EEeeccCHHHHHHHHHHHHhh
Confidence 999999999999999999864
No 9
>2yhg_A SDE_182CT, cellulose-binding protein; hydrolase, glycoside hydrolase; HET: BTB; 1.08A {Saccharophagus degradans}
Probab=99.37 E-value=3.3e-12 Score=123.41 Aligned_cols=132 Identities=21% Similarity=0.290 Sum_probs=94.2
Q ss_pred CCceEEEecCCC--chHHHHHHHHHcCC-CCeEEEEEEecC----C-CC---hHHHHHHHHHHHHHhCCC--CCCe----
Q 019923 18 NPAKLIIDTDPG--IDDSMTILMAFQTP-ELEILGLTTIFG----N-VT---TEDATRNALTLCEMAGCP--GVPV---- 80 (334)
Q Consensus 18 ~~~~viiDtD~G--~DD~~AL~~~l~~p-~i~v~gIt~v~G----n-~~---~~~~~~na~~ll~~~g~~--~IPV---- 80 (334)
.|.||||+||.+ +||.++|+.+|..+ +++|.||+.++. + .. .+...+.-.+++..++.. ..|.
T Consensus 27 ~k~RviI~TDi~nEpDD~~Slvr~Llysn~~dieGivat~s~~~~~~~~~~~i~~ii~aY~~v~~nL~~h~~~yP~~~~L 106 (437)
T 2yhg_A 27 GRYRVIHTTDMGADPDDEQSLVRQLVMANEYDLEGIITTTGCWKKSTSNTAYVDRILNAYSQAYPNLSKHAEGFPTPAYL 106 (437)
T ss_dssp CCCEEEEEECTTSCTHHHHHHHHHHHTGGGSEEEEEEECCBTTBCCCCCCHHHHHHHHHHHHHHHHHTTTSTTCCCHHHH
T ss_pred CCceEEEeCCCCCCCccHHHHHHHHhCcccceEeEEEEecccccCCCCCHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHh
Confidence 688999999976 99999999998865 699999987743 2 22 121112223445555543 3443
Q ss_pred ----eeCCCCCCCCCCCcccccccCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHcC-CCceEEEEecchhHHHHHHhhC
Q 019923 81 ----AEGSPEPLKGGKPRVAEFAHGSDGMGNISLTPPKAKKCDKNASEFLVDKVSEY-PGEVSILALGPLTNLALAIKRD 155 (334)
Q Consensus 81 ----~~Ga~~pl~~~~~~~~~~~hg~dGlg~~~~~~~~~~~~~~~a~~~i~~~~~~~-p~~vtila~GpLTNlA~al~~~ 155 (334)
..|+... ||.+. ..+.+.+|.++|++.+++. +.+|.|+|.|.+|+||.||.+.
T Consensus 107 rs~v~~G~~~y----------------gm~~~------g~~~~s~gs~~Ii~~~~~~d~rPL~i~~wGG~n~lAqAL~~~ 164 (437)
T 2yhg_A 107 DSINVMGQRGY----------------GMGDV------GSGKDSAGSNLIIAAVDKDDPRPVWATCWGGCNTIAQAVWKV 164 (437)
T ss_dssp HHTEEECCSSC----------------GGGGC------STTCCCHHHHHHHHHHHSSCSSCEEEEESSCSHHHHHHHHHH
T ss_pred hhhhccCCccc----------------CCCcC------CCCCCChHHHHHHHHHhCCCCCceEEEEecCHhHHHHHHHHh
Confidence 4444321 11111 1123588999999999875 6799999999999999999999
Q ss_pred ---------cchHhccceEEEecCCC
Q 019923 156 ---------SSFASKVKNIVVLGGAF 172 (334)
Q Consensus 156 ---------P~~~~~i~~iviMGG~~ 172 (334)
|+|.+|| +||+.||-=
T Consensus 165 ~~~~~~~~~~~i~~kl-rvy~Ig~qd 189 (437)
T 2yhg_A 165 QNTRSQAQLDAFISKL-RVYDILGQD 189 (437)
T ss_dssp HHHSCHHHHHHHHHTE-EEEEESCCS
T ss_pred hhhcCcchhHHHhhcE-EEEEecCcc
Confidence 9999999 799998853
No 10
>2der_A TRNA-specific 2-thiouridylase MNMA; protein-RNA complex, transferase/RNA complex; 3.10A {Escherichia coli} PDB: 2det_A 2deu_A*
Probab=50.27 E-value=69 Score=29.91 Aligned_cols=61 Identities=18% Similarity=0.304 Sum_probs=44.6
Q ss_pred CCCceEEEecCCCchHHHHHHHHHcCCCCeEEEEEEecCCCC-------hHHHHHHHHHHHHHhCCCCCCee
Q 019923 17 TNPAKLIIDTDPGIDDSMTILMAFQTPELEILGLTTIFGNVT-------TEDATRNALTLCEMAGCPGVPVA 81 (334)
Q Consensus 17 ~~~~~viiDtD~G~DD~~AL~~~l~~p~i~v~gIt~v~Gn~~-------~~~~~~na~~ll~~~g~~~IPV~ 81 (334)
....+|++=.=.|.|-++++.++... ..+|.||+...+... .+...+.++++.+.+| ||.+
T Consensus 15 ~~~~kVvVa~SGGvDSsv~a~lL~~~-G~~V~~v~~~~~~~~~~~~~~~s~~d~~~a~~va~~LG---Ip~~ 82 (380)
T 2der_A 15 ETAKKVIVGMSGGVDSSVSAWLLQQQ-GYQVEGLFMKNWEEDDGEEYCTAAADLADAQAVCDKLG---IELH 82 (380)
T ss_dssp --CCEEEEECCSCSTTHHHHHHHHTT-CCEEEEEEEECCCCCSHHHHHHHHHHHHHHHHHHHHHT---CCEE
T ss_pred CCCCEEEEEEEChHHHHHHHHHHHHc-CCeEEEEEEEcCccccccCCCCCHHHHHHHHHHHHHcC---CcEE
Confidence 35678999999999887777666555 699999998876432 3455677888888887 6655
No 11
>1ni5_A Putative cell cycle protein MESJ; structural genomics, ATPase, PP-type, putative cell cycle PR PSI, protein structure initiative; 2.65A {Escherichia coli} SCOP: b.153.1.2 c.26.2.5 d.229.1.1
Probab=46.22 E-value=62 Score=30.73 Aligned_cols=61 Identities=15% Similarity=0.331 Sum_probs=42.9
Q ss_pred CCceEEEecCCCchHHHHHHHHHcC-----CCCeEEEEEEecCCC-ChHHHHHHHHHHHHHhCCCCCCeee
Q 019923 18 NPAKLIIDTDPGIDDSMTILMAFQT-----PELEILGLTTIFGNV-TTEDATRNALTLCEMAGCPGVPVAE 82 (334)
Q Consensus 18 ~~~~viiDtD~G~DD~~AL~~~l~~-----p~i~v~gIt~v~Gn~-~~~~~~~na~~ll~~~g~~~IPV~~ 82 (334)
...+|++=.=+|.| .++|+++|.. ..+++.++++.+|-. ..+...+.+..+++.+| ||.+.
T Consensus 12 ~~~~vlVa~SGG~D-S~~Ll~ll~~~~~~~~g~~v~avhvdhglr~~s~~~~~~v~~~~~~lg---i~~~v 78 (433)
T 1ni5_A 12 TSRQILVAFSGGLD-STVLLHQLVQWRTENPGVALRAIHVHHGLSANADAWVTHCENVCQQWQ---VPLVV 78 (433)
T ss_dssp TCSEEEEECCSBHH-HHHHHHHHHHHHTTSTTCEEEEEEECCSCCSSHHHHHHHHHHHHHHTT---CCEEE
T ss_pred CCCEEEEEEcchHH-HHHHHHHHHHHHHhcCCCeEEEEEEECCCCcccHHHHHHHHHHHHHcC---CcEEE
Confidence 45689998889995 6666666653 679999999988854 34445566777777765 66553
No 12
>2hma_A Probable tRNA (5-methylaminomethyl-2-thiouridylat methyltransferase; alpha-beta, beta barrel, structural genomics, PSI-2; HET: MSE SAM; 2.41A {Streptococcus pneumoniae}
Probab=41.54 E-value=80 Score=29.36 Aligned_cols=60 Identities=15% Similarity=0.373 Sum_probs=44.9
Q ss_pred CCceEEEecCCCchHHHHHHHHHcCCCCeEEEEEEecCCC-------ChHHHHHHHHHHHHHhCCCCCCee
Q 019923 18 NPAKLIIDTDPGIDDSMTILMAFQTPELEILGLTTIFGNV-------TTEDATRNALTLCEMAGCPGVPVA 81 (334)
Q Consensus 18 ~~~~viiDtD~G~DD~~AL~~~l~~p~i~v~gIt~v~Gn~-------~~~~~~~na~~ll~~~g~~~IPV~ 81 (334)
..++|++=.=.|.|-++++.++... ..+|.|++...|.. ......+.++++.+.+| ||.+
T Consensus 8 ~~~kVlVa~SGGvDSsv~a~lL~~~-G~~V~~v~~~~~~~~~~~~~c~~~~d~~~a~~va~~lG---Ip~~ 74 (376)
T 2hma_A 8 SKTRVVVGMSGGVDSSVTALLLKEQ-GYDVIGIFMKNWDDTDENGVCTATEDYKDVVAVADQIG---IPYY 74 (376)
T ss_dssp GGSEEEEECCSSHHHHHHHHHHHHT-TCEEEEEEEECCCCCC----CHHHHHHHHHHHHHHHHT---CCEE
T ss_pred CCCeEEEEEeCHHHHHHHHHHHHHc-CCcEEEEEEECCCcccccccCCCHHHHHHHHHHHHHhC---CcEE
Confidence 4568999999999877766666555 58999999887742 24456778888888887 6654
No 13
>3k32_A Uncharacterized protein MJ0690; predicted subunit of tRNA methyltransferase, methanocaldococcus jannaschii DSM , PSI- 2; 2.50A {Methanocaldococcus jannaschii}
Probab=41.29 E-value=44 Score=28.01 Aligned_cols=53 Identities=15% Similarity=0.144 Sum_probs=38.2
Q ss_pred CCceEEEecCCCchHHHHHHHHHcCCCCeEEEEEEecCCCChHHHHHHHHHHHHHhC
Q 019923 18 NPAKLIIDTDPGIDDSMTILMAFQTPELEILGLTTIFGNVTTEDATRNALTLCEMAG 74 (334)
Q Consensus 18 ~~~~viiDtD~G~DD~~AL~~~l~~p~i~v~gIt~v~Gn~~~~~~~~na~~ll~~~g 74 (334)
.+++|++=.=+|+|-.+.+.++.. -..++.+++..+|... ..+.+.++.+.+|
T Consensus 5 ~~~kv~v~~SGG~DS~~ll~ll~~-~g~~v~~~~v~~~~~~---~~~~~~~~a~~lg 57 (203)
T 3k32_A 5 KLMDVHVLFSGGKDSSLSAVILKK-LGYNPHLITINFGVIP---SYKLAEETAKILG 57 (203)
T ss_dssp -CEEEEEECCCSHHHHHHHHHHHH-TTEEEEEEEEECSSSC---TTHHHHHHHHHHT
T ss_pred cCCeEEEEEECcHHHHHHHHHHHH-cCCCeEEEEEeCCCch---HHHHHHHHHHHhC
Confidence 356899999999976665544443 3589999998888654 3457777888877
No 14
>3bl5_A Queuosine biosynthesis protein QUEC; PREQ1 biosynthesis, RNA modification, tRNA, hydrolase; 2.95A {Bacillus subtilis}
Probab=35.79 E-value=84 Score=26.02 Aligned_cols=54 Identities=20% Similarity=0.233 Sum_probs=39.3
Q ss_pred CceEEEecCCCchHHHHHHHHHcCCCCeEEEEEEecCCCChHHHHHHHHHHHHHhC
Q 019923 19 PAKLIIDTDPGIDDSMTILMAFQTPELEILGLTTIFGNVTTEDATRNALTLCEMAG 74 (334)
Q Consensus 19 ~~~viiDtD~G~DD~~AL~~~l~~p~i~v~gIt~v~Gn~~~~~~~~na~~ll~~~g 74 (334)
+.+|++-.=.|+|-.+.+.++... ..+|.+++..+|.... ...+.+.++.+.+|
T Consensus 3 ~~~v~v~lSGG~DS~~ll~ll~~~-~~~v~~~~~~~~~~~~-~e~~~a~~~a~~lg 56 (219)
T 3bl5_A 3 KEKAIVVFSGGQDSTTCLLWALKE-FEEVETVTFHYNQRHS-QEVEVAKSIAEKLG 56 (219)
T ss_dssp CCEEEEECCSSHHHHHHHHHHHHH-CSEEEEEEEESSCTTC-HHHHHHHHHHHTTC
T ss_pred CCCEEEEccCcHHHHHHHHHHHHc-CCceEEEEEeCCCCCH-HHHHHHHHHHHHhC
Confidence 468899999999776666555544 3789999998886443 34667788877777
No 15
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=33.65 E-value=71 Score=25.80 Aligned_cols=41 Identities=15% Similarity=0.385 Sum_probs=27.7
Q ss_pred CCCeEEEEEEecCCCChHHHHHHHHHHHHHhCCCCCCeeeCCC
Q 019923 43 PELEILGLTTIFGNVTTEDATRNALTLCEMAGCPGVPVAEGSP 85 (334)
Q Consensus 43 p~i~v~gIt~v~Gn~~~~~~~~na~~ll~~~g~~~IPV~~Ga~ 85 (334)
-+.+++|+++..+. .........+.|+..|..++||..|-.
T Consensus 68 ~~~diV~lS~~~~~--~~~~~~~~i~~L~~~g~~~i~v~vGG~ 108 (161)
T 2yxb_A 68 EDVDVIGVSILNGA--HLHLMKRLMAKLRELGADDIPVVLGGT 108 (161)
T ss_dssp TTCSEEEEEESSSC--HHHHHHHHHHHHHHTTCTTSCEEEEEC
T ss_pred cCCCEEEEEeechh--hHHHHHHHHHHHHhcCCCCCEEEEeCC
Confidence 35789999887553 334445555666667766799998753
No 16
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=27.82 E-value=47 Score=26.02 Aligned_cols=39 Identities=18% Similarity=0.404 Sum_probs=27.6
Q ss_pred CCeEEEEEEecCCCChHHHHHHHHHHHHHhCCCCCCeeeCC
Q 019923 44 ELEILGLTTIFGNVTTEDATRNALTLCEMAGCPGVPVAEGS 84 (334)
Q Consensus 44 ~i~v~gIt~v~Gn~~~~~~~~na~~ll~~~g~~~IPV~~Ga 84 (334)
+.+++++++..+. .........+.|+..|..++||+.|-
T Consensus 54 ~~d~v~lS~~~~~--~~~~~~~~i~~l~~~g~~~i~v~vGG 92 (137)
T 1ccw_A 54 KADAILVSSLYGQ--GEIDCKGLRQKCDEAGLEGILLYVGG 92 (137)
T ss_dssp TCSEEEEEECSST--HHHHHTTHHHHHHHTTCTTCEEEEEE
T ss_pred CCCEEEEEecCcC--cHHHHHHHHHHHHhcCCCCCEEEEEC
Confidence 5688999887753 33445566667777786689998875
No 17
>3a2k_A TRNA(Ile)-lysidine synthase; ligase, pseudo-knot, ligase/RNA complex; 3.65A {Geobacillus kaustophilus}
Probab=26.94 E-value=83 Score=30.08 Aligned_cols=62 Identities=16% Similarity=0.226 Sum_probs=42.3
Q ss_pred CCCceEEEecCCCchHHHHHHHHHcC----CCCeEEEEEEecCCCC--hHHHHHHHHHHHHHhCCCCCCeee
Q 019923 17 TNPAKLIIDTDPGIDDSMTILMAFQT----PELEILGLTTIFGNVT--TEDATRNALTLCEMAGCPGVPVAE 82 (334)
Q Consensus 17 ~~~~~viiDtD~G~DD~~AL~~~l~~----p~i~v~gIt~v~Gn~~--~~~~~~na~~ll~~~g~~~IPV~~ 82 (334)
....+|++=.-+|.| .++|+++|.. ..+++.++++.+|-.. .+...+.+.++++.+| ||.+.
T Consensus 16 ~~~~~vlVa~SGG~D-S~~Ll~ll~~~~~~~~~~v~avhvdhglrg~~s~~~~~~v~~~~~~lg---i~~~v 83 (464)
T 3a2k_A 16 SEGAAVIVGVSGGPD-SLALLHVFLSLRDEWKLQVIAAHVDHMFRGRESEEEMEFVKRFCVERR---ILCET 83 (464)
T ss_dssp SCSSBEEEECCSSHH-HHHHHHHHHHHHHTTTCBCEEEEEECTTCTHHHHHHHHHHHHHHHHTT---CEEEE
T ss_pred CCCCEEEEEEcCcHH-HHHHHHHHHHHHHHcCCeEEEEEEECCCCccccHHHHHHHHHHHHHcC---CcEEE
Confidence 345689999999995 5566666543 5689999999998642 3344556677777665 56543
No 18
>4f4h_A Glutamine dependent NAD+ synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ligase; 1.75A {Burkholderia thailandensis}
Probab=25.12 E-value=1e+02 Score=30.42 Aligned_cols=64 Identities=16% Similarity=0.226 Sum_probs=47.4
Q ss_pred CCCceEEEecCCCchHHHHHHHHHc-CCCCeEEEEEEecCCCChHHHHHHHHHHHHHhCCC--CCCee
Q 019923 17 TNPAKLIIDTDPGIDDSMTILMAFQ-TPELEILGLTTIFGNVTTEDATRNALTLCEMAGCP--GVPVA 81 (334)
Q Consensus 17 ~~~~~viiDtD~G~DD~~AL~~~l~-~p~i~v~gIt~v~Gn~~~~~~~~na~~ll~~~g~~--~IPV~ 81 (334)
+..++++|---.|+|.+++++++.. -+.-.|.||+ ..+..+.+.+..+|..+.+.+|.. .|||-
T Consensus 298 ~g~~~~vlglSGGiDSal~~~la~~alg~~~v~~v~-mp~~~ts~~t~~~a~~la~~lg~~~~~i~i~ 364 (565)
T 4f4h_A 298 NGFPGAIIGLSGGVDSALVLAVAVDALGAERVRAVM-MPSRYTAGISTTDAADMARRVGVRYDEIAIA 364 (565)
T ss_dssp TTCCCEEEECCSSHHHHHHHHHHHHHHCGGGEEEEE-CCCTTCCHHHHHHHHHHHHHHTCEEEECCCH
T ss_pred cCCCcEEEecCCCccHHHHHHHHHHHhCCccEEEEe-ccccccccchHHHHHHHHHHhCCceeeeecc
Confidence 3567899999999999998888643 1224577775 455556777888999999999953 56653
No 19
>1o7j_A L-asparaginase; atomic resolution, hydrolase; 1.0A {Erwinia chrysanthemi} SCOP: c.88.1.1 PDB: 1hfj_A 1hfk_A* 1hg0_A 1hg1_A 1hfw_A* 1jsr_A* 1jsl_A 2gvn_A 1zcf_A 2hln_A* 2jk0_A
Probab=24.73 E-value=2.1e+02 Score=25.99 Aligned_cols=62 Identities=13% Similarity=0.079 Sum_probs=40.8
Q ss_pred cCCCchHHHHHHHHHcCC--CCeEEEEEEecCCCChHHHHHHHHHHHHHhCCCCCC-eeeCCCCCCCCC
Q 019923 26 TDPGIDDSMTILMAFQTP--ELEILGLTTIFGNVTTEDATRNALTLCEMAGCPGVP-VAEGSPEPLKGG 91 (334)
Q Consensus 26 tD~G~DD~~AL~~~l~~p--~i~v~gIt~v~Gn~~~~~~~~na~~ll~~~g~~~IP-V~~Ga~~pl~~~ 91 (334)
.|+.+.|.+.|.-....- +=+.-||.++||.-+++.++.- |.++=..+.| |.-|+.+|....
T Consensus 63 ~~mt~~~w~~la~~I~~~~~~~~~dG~VItHGTDTmeeTA~~----Ls~~l~~~kPVVlTGAmrP~~~~ 127 (327)
T 1o7j_A 63 ENMTGDVVLKLSQRVNELLARDDVDGVVITHGTDTVEESAYF----LHLTVKSDKPVVFVAAMRPATAI 127 (327)
T ss_dssp GGCCHHHHHHHHHHHHHHHTSTTCCEEEEECCSTTHHHHHHH----HHHHCCCCSCEEEECCSSCTTST
T ss_pred ccCCHHHHHHHHHHHHHHhccCCCCEEEEecCchhHHHHHHH----HHHHhCCCCCEEEeCCCCCCCCC
Confidence 456778888887765421 1135699999999888765433 3333235789 458999998653
No 20
>2pg3_A Queuosine biosynthesis protein QUEC; YP_049261.1, hypothetical protein, structural genomics, JOIN for structural genomics; 2.40A {Pectobacterium atrosepticum SCRI1043} SCOP: c.26.2.1
Probab=24.65 E-value=2.2e+02 Score=23.79 Aligned_cols=54 Identities=17% Similarity=0.220 Sum_probs=40.0
Q ss_pred ceEEEecCCCchHHHHHHHHHcCCCCeEEEEEEecCCCChHHHHHHHHHHHHHhCC
Q 019923 20 AKLIIDTDPGIDDSMTILMAFQTPELEILGLTTIFGNVTTEDATRNALTLCEMAGC 75 (334)
Q Consensus 20 ~~viiDtD~G~DD~~AL~~~l~~p~i~v~gIt~v~Gn~~~~~~~~na~~ll~~~g~ 75 (334)
+++++=-=.|+|-...+.++.... .+|.+|+..+|.... ...+.+.++.+.+|.
T Consensus 3 ~kvvv~lSGG~DS~~~l~ll~~~~-~~v~av~~~~g~~~~-~e~~~a~~~a~~lgi 56 (232)
T 2pg3_A 3 KRAVVVFSGGQDSTTCLIQALQDY-DDVHCITFDYGQRHR-AEIEVAQELSQKLGA 56 (232)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHHC-SEEEEEEEESSSSCH-HHHHHHHHHHHHHTC
T ss_pred CCEEEEecCcHHHHHHHHHHHHcC-CCEEEEEEECCCCCH-HHHHHHHHHHHHhCC
Confidence 577777888998777666665543 689999988886543 446678888888884
No 21
>2wlt_A L-asparaginase; hydrolase; 1.40A {Helicobacter pylori} PDB: 2wt4_A
Probab=24.41 E-value=2.1e+02 Score=26.10 Aligned_cols=60 Identities=17% Similarity=0.104 Sum_probs=41.2
Q ss_pred cCCCchHHHHHHHHHc----CCCCeEEEEEEecCCCChHHHHHHHHHHHHHhCCCCCC-eeeCCCCCCCCC
Q 019923 26 TDPGIDDSMTILMAFQ----TPELEILGLTTIFGNVTTEDATRNALTLCEMAGCPGVP-VAEGSPEPLKGG 91 (334)
Q Consensus 26 tD~G~DD~~AL~~~l~----~p~i~v~gIt~v~Gn~~~~~~~~na~~ll~~~g~~~IP-V~~Ga~~pl~~~ 91 (334)
.|+.+.|.+.|.-... .+ +.-||.++||.-+++.++.- |.++=..+.| |.-|+.+|....
T Consensus 63 ~~mt~~~w~~la~~I~~~~~~~--~~dG~VItHGTDTmeeTA~~----Ls~~l~~~kPVVlTGAmrP~~~~ 127 (332)
T 2wlt_A 63 QDMNEEIWFKLAQRAQELLDDS--RIQGVVITHGTDTLEESAYF----LNLVLHSTKPVVLVGAMRNASSL 127 (332)
T ss_dssp GGCCHHHHHHHHHHHHHHHTST--TCCEEEEECCSSSHHHHHHH----HHHHCCCSSCEEEECCSSCTTST
T ss_pred ccCCHHHHHHHHHHHHHHhccC--CCCEEEEecCchhHHHHHHH----HHHHhCCCCCEEEECCCCCCCCC
Confidence 4567788888877654 23 35599999999888765433 3333236789 558999998764
No 22
>1xng_A NH(3)-dependent NAD(+) synthetase; amidotransferase, ligase; HET: DND ATP; 1.70A {Helicobacter pylori} SCOP: c.26.2.1 PDB: 1xnh_A
Probab=23.12 E-value=1.2e+02 Score=26.51 Aligned_cols=57 Identities=16% Similarity=0.179 Sum_probs=42.5
Q ss_pred CCceEEEecCCCchHHHHHHHHHcCCCCeEEEEEEecCCCChHHHHHHHHHHHHHhCC
Q 019923 18 NPAKLIIDTDPGIDDSMTILMAFQTPELEILGLTTIFGNVTTEDATRNALTLCEMAGC 75 (334)
Q Consensus 18 ~~~~viiDtD~G~DD~~AL~~~l~~p~i~v~gIt~v~Gn~~~~~~~~na~~ll~~~g~ 75 (334)
...+|++=.-+|+|-++++.++......+|.+++.-+|..+ ....+.+.++.+.+|.
T Consensus 24 ~~~~vvv~lSGGiDSsv~~~l~~~~~~~~v~av~~~~~~~~-~~e~~~a~~~a~~lgi 80 (268)
T 1xng_A 24 GFKKVVYGLSGGLDSAVVGVLCQKVFKENAHALLMPSSVSM-PENKTDALNLCEKFSI 80 (268)
T ss_dssp TCCCEEEECCSSHHHHHHHHHHHHHHGGGEEEEECCCSSSC-HHHHHHHHHHHHHHTC
T ss_pred CCCCEEEEccCcHHHHHHHHHHHHhCCCCEEEEEeCCCCCC-HHHHHHHHHHHHHcCC
Confidence 34678998999998887776665432368999988877644 4557788999998884
No 23
>3auf_A Glycinamide ribonucleotide transformylase 1; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; 2.07A {Symbiobacterium toebii}
Probab=23.09 E-value=1.2e+02 Score=26.18 Aligned_cols=64 Identities=14% Similarity=-0.037 Sum_probs=38.2
Q ss_pred CcccccCCCCCceEEEecCCCchHHHHHHHHHcCC--CCeEEEEEEecCCCChHHHHHHHHHHHHHhCCCCCCeee
Q 019923 9 SGVVLGSSTNPAKLIIDTDPGIDDSMTILMAFQTP--ELEILGLTTIFGNVTTEDATRNALTLCEMAGCPGVPVAE 82 (334)
Q Consensus 9 ~~~~~~~~~~~~~viiDtD~G~DD~~AL~~~l~~p--~i~v~gIt~v~Gn~~~~~~~~na~~ll~~~g~~~IPV~~ 82 (334)
|+.....+..++||+|=.-....-+.+++-++... ..+|.+|.|-.-+.. .++++-+..||++.
T Consensus 12 ~~~~~~~~~~~~rI~~l~SG~g~~~~~~l~~l~~~~~~~~I~~Vvt~~~~~~----------~~~~A~~~gIp~~~ 77 (229)
T 3auf_A 12 SGENLYFQGHMIRIGVLISGSGTNLQAILDGCREGRIPGRVAVVISDRADAY----------GLERARRAGVDALH 77 (229)
T ss_dssp CSBSSSCBTTCEEEEEEESSCCHHHHHHHHHHHTTSSSEEEEEEEESSTTCH----------HHHHHHHTTCEEEE
T ss_pred ccccccccCCCcEEEEEEeCCcHHHHHHHHHHHhCCCCCeEEEEEcCCCchH----------HHHHHHHcCCCEEE
Confidence 45544444455677776544445677888888766 468988877432211 23344445699873
No 24
>1vl2_A Argininosuccinate synthase; TM1780, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics, ligase; 1.65A {Thermotoga maritima} SCOP: c.26.2.1 d.210.1.1
Probab=22.94 E-value=2.3e+02 Score=26.89 Aligned_cols=56 Identities=13% Similarity=0.202 Sum_probs=42.4
Q ss_pred CCCCceEEEecCCCchHHHHHHHHHcCCCCeEEEEEEecCCCChHHHHHHHHHHHHHhCC
Q 019923 16 STNPAKLIIDTDPGIDDSMTILMAFQTPELEILGLTTIFGNVTTEDATRNALTLCEMAGC 75 (334)
Q Consensus 16 ~~~~~~viiDtD~G~DD~~AL~~~l~~p~i~v~gIt~v~Gn~~~~~~~~na~~ll~~~g~ 75 (334)
--++.||++=.=.|+|-.+++.+|... ..+|+|+|...|.. .-.+.++++.+.+|.
T Consensus 11 ~~~~~KVVVA~SGGlDSSv~a~~Lke~-G~eViavt~d~Gq~---~Ele~A~~vA~~lGi 66 (421)
T 1vl2_A 11 HHMKEKVVLAYSGGLDTSVILKWLCEK-GFDVIAYVANVGQK---DDFVAIKEKALKTGA 66 (421)
T ss_dssp ---CCEEEEECCSSHHHHHHHHHHHHT-TCEEEEEEEESSCC---CCHHHHHHHHHHHTC
T ss_pred ccccCCEEEEeCCcHHHHHHHHHHHHC-CCeEEEEEEEcCCH---HHHHHHHHHHHHcCC
Confidence 357889999999999998888888777 78999999998863 224566777777774
No 25
>2obn_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; HET: PG4; 2.30A {Anabaena variabilis}
Probab=22.52 E-value=2.6e+02 Score=25.68 Aligned_cols=61 Identities=11% Similarity=0.254 Sum_probs=43.5
Q ss_pred CCceEEEecCCC---c-----------hHHHHHHHHHc---C--CCCeEEEEEEecCCCChHHHHHHHHHHHHHhCCCCC
Q 019923 18 NPAKLIIDTDPG---I-----------DDSMTILMAFQ---T--PELEILGLTTIFGNVTTEDATRNALTLCEMAGCPGV 78 (334)
Q Consensus 18 ~~~~viiDtD~G---~-----------DD~~AL~~~l~---~--p~i~v~gIt~v~Gn~~~~~~~~na~~ll~~~g~~~I 78 (334)
.+..||+=.++| + .+.+.+..++. + +.++|+||+...-+.+.+....|...+-+.+| +
T Consensus 253 ~p~~vILv~~~~~g~i~~~~~~~~p~l~~~i~t~e~l~~~~~~~~~~~V~Gi~lN~~~~~~~~~~~~~~~ie~~~g---l 329 (349)
T 2obn_A 253 QPTQLVLVHRAGQTHNGNNPHVPIPPLPEVIRLYETVASGGGAFGTVPVVGIALNTAHLDEYAAKEAIAHTIAETG---L 329 (349)
T ss_dssp CCSEEEEEEETTCCBCSSCTTSBCCCHHHHHHHHHHHHHTTTTSCCCCEEEEEEECTTSCHHHHHHHHHHHHHHHC---S
T ss_pred CCCeEEEEECCCCceECCCCccCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCCCHHHHHHHHHHHHHHHC---C
Confidence 455677777764 4 56666666664 4 88999999987777677777777777777777 6
Q ss_pred Cee
Q 019923 79 PVA 81 (334)
Q Consensus 79 PV~ 81 (334)
||.
T Consensus 330 Pv~ 332 (349)
T 2obn_A 330 PCT 332 (349)
T ss_dssp CEE
T ss_pred CEE
Confidence 654
No 26
>3rjz_A N-type ATP pyrophosphatase superfamily; structural genomics, PSI-biology, northeast structural genom consortium, NESG, alpha-beta protein; 2.30A {Pyrococcus furiosus} SCOP: c.26.2.1 PDB: 3h7e_A 3rk0_A* 3rk1_A* 1ru8_A 2d13_A
Probab=22.44 E-value=2.3e+02 Score=24.49 Aligned_cols=139 Identities=18% Similarity=0.185 Sum_probs=75.0
Q ss_pred ceEEEecCCCchHHHHHHHHHcCCCCeEEEEEEecCCCC---hH--HHHHHHHHHHHHhCCCCCCeeeCCCCCCCCCCCc
Q 019923 20 AKLIIDTDPGIDDSMTILMAFQTPELEILGLTTIFGNVT---TE--DATRNALTLCEMAGCPGVPVAEGSPEPLKGGKPR 94 (334)
Q Consensus 20 ~~viiDtD~G~DD~~AL~~~l~~p~i~v~gIt~v~Gn~~---~~--~~~~na~~ll~~~g~~~IPV~~Ga~~pl~~~~~~ 94 (334)
+|+++=.-.|.|-.+|+.+|.... .+|.|+++.++... .- ...+.+.++.+.+| ||.+.-. +
T Consensus 5 MKvvvl~SGGkDSs~al~~l~~~G-~eV~~L~~~~~~~~~s~~~h~~~~e~a~~~A~~LG---Ipl~~v~---~------ 71 (237)
T 3rjz_A 5 ADVAVLYSGGKDSNYALYWAIKNR-FSVKFLVTMVSENEESYMYHTINANLTDLQARALG---IPLVKGF---T------ 71 (237)
T ss_dssp SEEEEECCSSHHHHHHHHHHHHTT-CEEEEEEEEECC--------CCSSSHHHHHHHHHT---CCEEEEE---C------
T ss_pred CEEEEEecCcHHHHHHHHHHHHcC-CeEEEEEEEcCCCCCccccCCccHHHHHHHHHHcC---CCEEEEE---C------
Confidence 589999999999999999998874 89999987765421 00 01223555556666 6665311 0
Q ss_pred ccccccCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHcCCCceEEEEecchhHHHHHHhhCcchHhccceEEEecCCCCC
Q 019923 95 VAEFAHGSDGMGNISLTPPKAKKCDKNASEFLVDKVSEYPGEVSILALGPLTNLALAIKRDSSFASKVKNIVVLGGAFFA 174 (334)
Q Consensus 95 ~~~~~hg~dGlg~~~~~~~~~~~~~~~a~~~i~~~~~~~p~~vtila~GpLTNlA~al~~~P~~~~~i~~iviMGG~~~~ 174 (334)
.|. .+.-++.|.+.+++. .+.-++.|.+--=.. -..-++...++.-..+
T Consensus 72 -----~g~----------------~~~e~e~l~~~l~~~--~i~~vv~Gdi~s~yq-r~r~e~vc~~~gl~~~------- 120 (237)
T 3rjz_A 72 -----QGE----------------KEKEVEDLKRVLSGL--KIQGIVAGALASKYQ-RKRIEKVAKELGLEVY------- 120 (237)
T ss_dssp ---------------------------CHHHHHHHHTTS--CCSEEECC---CCSH-HHHHHHHHHHTTCEEE-------
T ss_pred -----CCC----------------chHHHHHHHHHHHhc--CCcEEEECCcchHHH-HHHHHHHHHHcCCEEE-------
Confidence 110 011156677777765 577788887531000 0011333444421111
Q ss_pred CCCCCccccccccCCHHH-HHHHHHcCCcEEEEeccc
Q 019923 175 LGNVNPAAEANIYGDPEA-ADVVFTSGANIAVVGINI 210 (334)
Q Consensus 175 ~GN~~~~aEfN~~~DPeA-A~~Vl~s~~~i~~v~ldv 210 (334)
.+=+..|++. ++..+++|...+++..+.
T Consensus 121 --------~PLW~~d~~~Ll~e~i~~G~~aiiv~v~~ 149 (237)
T 3rjz_A 121 --------TPAWGRDAKEYMRELLNLGFKIMVVGVSA 149 (237)
T ss_dssp --------CSSSSCCHHHHHHHHHHTTCEEEEEEEES
T ss_pred --------ccccCCCHHHHHHHHHHCCCEEEEEEEec
Confidence 0111235543 455567899998887764
No 27
>2lqo_A Putative glutaredoxin RV3198.1/MT3292; TRX fold, oxidoreductase; NMR {Mycobacterium tuberculosis}
Probab=21.45 E-value=1.6e+02 Score=21.28 Aligned_cols=42 Identities=14% Similarity=0.065 Sum_probs=28.4
Q ss_pred ccccccccCCHHHHHHHHHc-----CCcEEEEeccccceeecCHHHHH
Q 019923 180 PAAEANIYGDPEAADVVFTS-----GANIAVVGINITTQVKLTDADFL 222 (334)
Q Consensus 180 ~~aEfN~~~DPeAA~~Vl~s-----~~~i~~v~ldvt~~~~~~~~~~~ 222 (334)
+..|.|+.-||+|.+.+.+- .+|.++++ |=+.-..++.+++.
T Consensus 30 ~y~~idi~~d~~~~~~~~~~~~G~~tVP~I~i~-Dg~~l~~~~~~el~ 76 (92)
T 2lqo_A 30 AYDEVDIEHNRAAAEFVGSVNGGNRTVPTVKFA-DGSTLTNPSADEVK 76 (92)
T ss_dssp CCEEEETTTCHHHHHHHHHHSSSSSCSCEEEET-TSCEEESCCHHHHH
T ss_pred ceEEEEcCCCHHHHHHHHHHcCCCCEeCEEEEe-CCEEEeCCCHHHHH
Confidence 46799999999999999862 36888774 32222334555553
No 28
>1wsa_A Asparaginase, asparagine amidohydrolase; periplasmic; 2.20A {Wolinella succinogenes} SCOP: c.88.1.1
Probab=21.17 E-value=2.2e+02 Score=25.94 Aligned_cols=60 Identities=13% Similarity=0.046 Sum_probs=40.5
Q ss_pred cCCCchHHHHHHHHHc----CCCCeEEEEEEecCCCChHHHHHHHHHHHHHhCCCCCC-eeeCCCCCCCCC
Q 019923 26 TDPGIDDSMTILMAFQ----TPELEILGLTTIFGNVTTEDATRNALTLCEMAGCPGVP-VAEGSPEPLKGG 91 (334)
Q Consensus 26 tD~G~DD~~AL~~~l~----~p~i~v~gIt~v~Gn~~~~~~~~na~~ll~~~g~~~IP-V~~Ga~~pl~~~ 91 (334)
.|+.+.|.+.|+-... .+ +.-||.++||.-+++.++.- |.++=..+.| |.-|+.+|....
T Consensus 61 ~~mt~~~w~~la~~I~~~~~~~--~~dG~VItHGTDTmeeTA~~----Ls~~l~~~kPVVlTGAmrP~~~~ 125 (330)
T 1wsa_A 61 QEMTGKVWLKLAKRVNELLAQK--ETEAVIITHGTDTMEETAFF----LNLTVKSQKPVVLVGAMRPGSSM 125 (330)
T ss_dssp GGCCHHHHHHHHHHHHHHHHST--TCCCEEEECCSSSHHHHHHH----HHHHCCCSSCEEEECCSSCTTST
T ss_pred ccCCHHHHHHHHHHHHHHhccC--CCCEEEEEcCcchHHHHHHH----HHHHcCCCCCEEEeCCCCCCCCC
Confidence 4456778888876654 23 35599999999888765433 3333236789 558999998654
No 29
>1agx_A Glutaminase-asparaginase; bacterial amidohydrolase; 2.90A {Acinetobacter glutaminasificans} SCOP: c.88.1.1
Probab=21.03 E-value=2e+02 Score=26.20 Aligned_cols=60 Identities=17% Similarity=0.218 Sum_probs=40.4
Q ss_pred cCCCchHHHHHHHHHc----CCCCeEEEEEEecCCCChHHHHHHHHHHHHHhCCCCCC-eeeCCCCCCCCC
Q 019923 26 TDPGIDDSMTILMAFQ----TPELEILGLTTIFGNVTTEDATRNALTLCEMAGCPGVP-VAEGSPEPLKGG 91 (334)
Q Consensus 26 tD~G~DD~~AL~~~l~----~p~i~v~gIt~v~Gn~~~~~~~~na~~ll~~~g~~~IP-V~~Ga~~pl~~~ 91 (334)
.|+.+.|.+.|+-... .+ +.-||.++||.-+++.++. .|.++=..+.| |.-|+.+|....
T Consensus 60 ~~mt~~~w~~la~~I~~~~~~~--~~dG~VItHGTDTmeeTA~----~Ls~~l~~~kPVVlTGAmrP~~~~ 124 (331)
T 1agx_A 60 ESITDKELLSLARQVNDLVKKP--SVNGVVITHGTDTMEETAF----FLNLVVHTDKPIVLVGSMRPSTAL 124 (331)
T ss_dssp GGCCHHHHHHHHHHHHHHHTST--TCCEEEEECCGGGHHHHHH----HHHHHCCCSSCEEEECCSSCTTST
T ss_pred ccCCHHHHHHHHHHHHHHhccC--CCCEEEEecCcchHHHHHH----HHHHHcCCCCCEEEeCCCCCCCCC
Confidence 4556788888876654 23 3569999999877775443 33333236789 559999998654
Done!