BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019924
(334 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 57/230 (24%), Positives = 95/230 (41%), Gaps = 30/230 (13%)
Query: 42 KVLDMRM--NNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQI 99
K+ D+++ N G+IP++ + L +L L+ N L G +P L NC +L +++ NN++
Sbjct: 440 KLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRL 499
Query: 100 NDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYL- 158
P W+ L L +L L +N F G I + SL +DL+ N F G +
Sbjct: 500 TGEIPKWIGRLENLAILKLSNNSFSGNI--PAELGDCRSLIWLDLNTNLFNGTIPAAMFK 557
Query: 159 --------------------DNFKAMMHGNN-----ISVEVDYMTPLNSSNYYESIILTI 193
D K HG + + + L++ N
Sbjct: 558 QSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVY 617
Query: 194 KGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTG 243
G M +D+S N G IP+ +G + L LN+ HN+++G
Sbjct: 618 GGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISG 667
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 68/234 (29%), Positives = 102/234 (43%), Gaps = 38/234 (16%)
Query: 15 SNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCN-LTSLNLNGN 73
SN F+ I PP + L + L + N F G+IP +C+ LT L+L+GN
Sbjct: 253 SNQFVGPI---PPLPLKSLQY--------LSLAENKFTGEIPDFLSGACDTLTGLDLSGN 301
Query: 74 RLEGPLPPSLVNCHHLEVLNVGNNQINDNFP-NWLEILPELQVLILRSNRFWGPIGENTT 132
G +PP +C LE L + +N + P + L + L+VL L N F G + E+ T
Sbjct: 302 HFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLT 361
Query: 133 IVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILT 192
+ SL +DLS N F+G +L N K N + + L
Sbjct: 362 NLS-ASLLTLDLSSNNFSGPILPNLCQNPK---------------------NTLQELYLQ 399
Query: 193 IKGIDIKMERIL---TIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTG 243
G K+ L + +++ LS N G IP +G L+ L+ L + N L G
Sbjct: 400 NNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEG 453
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 54/113 (47%)
Query: 31 TQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLE 90
T FD+N + LDM N +G IP++ L LNL N + G +P + + L
Sbjct: 621 TSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLN 680
Query: 91 VLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIID 143
+L++ +N+++ P + L L + L +N GPI E FP + ++
Sbjct: 681 ILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLN 733
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 58/209 (27%), Positives = 89/209 (42%), Gaps = 48/209 (22%)
Query: 49 NNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLP--PSLVNCHHLEVLNVGNNQINDNFPNW 106
++ NG + F S +LTSL+L+ N L GP+ SL +C L+ LNV +N + +FP
Sbjct: 84 SHINGSV-SGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTL--DFP-- 138
Query: 107 LEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYL--DNFKAM 164
G+ + + SL ++DLS N +G + G++ D +
Sbjct: 139 ---------------------GKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGEL 177
Query: 165 MH----GNNISVEVDYMTPLN------SSNYYESIILTIKGIDIKMERILTIFMTIDLSS 214
H GN IS +VD +N SSN + + I + + +D+S
Sbjct: 178 KHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPFLGDC--------SALQHLDISG 229
Query: 215 NKFQGGIPEVVGKLNLLKGLNISHNNLTG 243
NK G + LK LNIS N G
Sbjct: 230 NKLSGDFSRAISTCTELKLLNISSNQFVG 258
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 53/166 (31%), Positives = 73/166 (43%), Gaps = 12/166 (7%)
Query: 7 ATLYYLDLS-NNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNL 65
A+L LDLS NNF I + L + T + L ++ N F GKIP L
Sbjct: 365 ASLLTLDLSSNNFSGPI-------LPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSEL 417
Query: 66 TSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWG 125
SL+L+ N L G +P SL + L L + N + P L + L+ LIL N G
Sbjct: 418 VSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTG 477
Query: 126 PIGENTTIVPFPSLRIIDLSHNEFTGVLLT--GYLDNFKAMMHGNN 169
I + +L I LS+N TG + G L+N + NN
Sbjct: 478 EIPSGLSNC--TNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNN 521
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/205 (25%), Positives = 87/205 (42%), Gaps = 56/205 (27%)
Query: 42 KVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQIND 101
K L + N +G + + NL L+++ N +P L +C L+ L++ N+++
Sbjct: 178 KHLAISGNKISGDV--DVSRCVNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSG 234
Query: 102 NFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVL---LTGYL 158
+F + EL++L + SN+F GPI +P SL+ + L+ N+FTG + L+G
Sbjct: 235 DFSRAISTCTELKLLNISSNQFVGPIPP----LPLKSLQYLSLAENKFTGEIPDFLSGAC 290
Query: 159 DNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQ 218
D T+ G+D LS N F
Sbjct: 291 D--------------------------------TLTGLD--------------LSGNHFY 304
Query: 219 GGIPEVVGKLNLLKGLNISHNNLTG 243
G +P G +LL+ L +S NN +G
Sbjct: 305 GAVPPFFGSCSLLESLALSSNNFSG 329
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 54/101 (53%), Gaps = 2/101 (1%)
Query: 51 FNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEIL 110
+ G F + ++ L+++ N L G +P + + +L +LN+G+N I+ + P+ + L
Sbjct: 617 YGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDL 676
Query: 111 PELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTG 151
L +L L SN+ G I + + + L IDLS+N +G
Sbjct: 677 RGLNILDLSSNKLDGRIPQAMSALTM--LTEIDLSNNNLSG 715
Score = 36.6 bits (83), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 21/61 (34%)
Query: 210 IDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLT---------------------GLCGFP 248
+DLSSNK G IP+ + L +L +++S+NNL+ GLCG+P
Sbjct: 682 LDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYP 741
Query: 249 L 249
L
Sbjct: 742 L 742
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 57/230 (24%), Positives = 95/230 (41%), Gaps = 30/230 (13%)
Query: 42 KVLDMRM--NNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQI 99
K+ D+++ N G+IP++ + L +L L+ N L G +P L NC +L +++ NN++
Sbjct: 443 KLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRL 502
Query: 100 NDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYL- 158
P W+ L L +L L +N F G I + SL +DL+ N F G +
Sbjct: 503 TGEIPKWIGRLENLAILKLSNNSFSGNIP--AELGDCRSLIWLDLNTNLFNGTIPAAMFK 560
Query: 159 --------------------DNFKAMMHGNN-----ISVEVDYMTPLNSSNYYESIILTI 193
D K HG + + + L++ N
Sbjct: 561 QSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVY 620
Query: 194 KGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTG 243
G M +D+S N G IP+ +G + L LN+ HN+++G
Sbjct: 621 GGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISG 670
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 61/207 (29%), Positives = 93/207 (44%), Gaps = 27/207 (13%)
Query: 42 KVLDMRMNNFNGKIPRKFVKSCN-LTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQIN 100
+ L + N F G+IP +C+ LT L+L+GN G +PP +C LE L + +N +
Sbjct: 272 QYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFS 331
Query: 101 DNFP-NWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLD 159
P + L + L+VL L N F G + E+ T + SL +DLS N F+G +L
Sbjct: 332 GELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLS-ASLLTLDLSSNNFSGPILPNLCQ 390
Query: 160 NFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERIL---TIFMTIDLSSNK 216
N K N + + L G K+ L + +++ LS N
Sbjct: 391 NPK---------------------NTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNY 429
Query: 217 FQGGIPEVVGKLNLLKGLNISHNNLTG 243
G IP +G L+ L+ L + N L G
Sbjct: 430 LSGTIPSSLGSLSKLRDLKLWLNMLEG 456
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 54/113 (47%)
Query: 31 TQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLE 90
T FD+N + LDM N +G IP++ L LNL N + G +P + + L
Sbjct: 624 TSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLN 683
Query: 91 VLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIID 143
+L++ +N+++ P + L L + L +N GPI E FP + ++
Sbjct: 684 ILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLN 736
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 58/209 (27%), Positives = 89/209 (42%), Gaps = 48/209 (22%)
Query: 49 NNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLP--PSLVNCHHLEVLNVGNNQINDNFPNW 106
++ NG + F S +LTSL+L+ N L GP+ SL +C L+ LNV +N + +FP
Sbjct: 87 SHINGSV-SGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTL--DFP-- 141
Query: 107 LEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYL--DNFKAM 164
G+ + + SL ++DLS N +G + G++ D +
Sbjct: 142 ---------------------GKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGEL 180
Query: 165 MH----GNNISVEVDYMTPLN------SSNYYESIILTIKGIDIKMERILTIFMTIDLSS 214
H GN IS +VD +N SSN + + I + + +D+S
Sbjct: 181 KHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPFLGDC--------SALQHLDISG 232
Query: 215 NKFQGGIPEVVGKLNLLKGLNISHNNLTG 243
NK G + LK LNIS N G
Sbjct: 233 NKLSGDFSRAISTCTELKLLNISSNQFVG 261
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 53/166 (31%), Positives = 73/166 (43%), Gaps = 12/166 (7%)
Query: 7 ATLYYLDLS-NNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNL 65
A+L LDLS NNF I + L + T + L ++ N F GKIP L
Sbjct: 368 ASLLTLDLSSNNFSGPI-------LPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSEL 420
Query: 66 TSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWG 125
SL+L+ N L G +P SL + L L + N + P L + L+ LIL N G
Sbjct: 421 VSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTG 480
Query: 126 PIGENTTIVPFPSLRIIDLSHNEFTGVLLT--GYLDNFKAMMHGNN 169
I + +L I LS+N TG + G L+N + NN
Sbjct: 481 EIPSGLSNC--TNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNN 524
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/205 (25%), Positives = 87/205 (42%), Gaps = 56/205 (27%)
Query: 42 KVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQIND 101
K L + N +G + + NL L+++ N +P L +C L+ L++ N+++
Sbjct: 181 KHLAISGNKISGDV--DVSRCVNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSG 237
Query: 102 NFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVL---LTGYL 158
+F + EL++L + SN+F GPI +P SL+ + L+ N+FTG + L+G
Sbjct: 238 DFSRAISTCTELKLLNISSNQFVGPIPP----LPLKSLQYLSLAENKFTGEIPDFLSGAC 293
Query: 159 DNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQ 218
D T+ G+D LS N F
Sbjct: 294 D--------------------------------TLTGLD--------------LSGNHFY 307
Query: 219 GGIPEVVGKLNLLKGLNISHNNLTG 243
G +P G +LL+ L +S NN +G
Sbjct: 308 GAVPPFFGSCSLLESLALSSNNFSG 332
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 54/101 (53%), Gaps = 2/101 (1%)
Query: 51 FNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEIL 110
+ G F + ++ L+++ N L G +P + + +L +LN+G+N I+ + P+ + L
Sbjct: 620 YGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDL 679
Query: 111 PELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTG 151
L +L L SN+ G I + + + L IDLS+N +G
Sbjct: 680 RGLNILDLSSNKLDGRIPQAMSALTM--LTEIDLSNNNLSG 718
Score = 36.6 bits (83), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 21/61 (34%)
Query: 210 IDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLT---------------------GLCGFP 248
+DLSSNK G IP+ + L +L +++S+NNL+ GLCG+P
Sbjct: 685 LDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYP 744
Query: 249 L 249
L
Sbjct: 745 L 745
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 50/200 (25%), Positives = 83/200 (41%), Gaps = 7/200 (3%)
Query: 48 MNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWL 107
+NN G IP K L L + + G +P L L L+ N ++ P +
Sbjct: 86 INNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSI 145
Query: 108 EILPELQVLILRSNRFWGPIGENTTIVP--FPSLRIIDLSHNEFTGVLLTGYLDNFKAMM 165
LP L + NR G I ++ F S+ I S N TG + + + A +
Sbjct: 146 SSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTI---SRNRLTGKIPPTFANLNLAFV 202
Query: 166 HGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERI-LTIFMT-IDLSSNKFQGGIPE 223
+ +E D S + I L + + ++ L+ + +DL +N+ G +P+
Sbjct: 203 DLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQ 262
Query: 224 VVGKLNLLKGLNISHNNLTG 243
+ +L L LN+S NNL G
Sbjct: 263 GLTQLKFLHSLNVSFNNLCG 282
>pdb|1DCE|A Chain A, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
pdb|1DCE|C Chain C, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
Length = 567
Score = 36.6 bits (83), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 45/91 (49%), Gaps = 14/91 (15%)
Query: 65 LTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQIN--DNFPNWLEILPELQVLILRSNR 122
+T L+L+ NRL LPP+L LEVL +N + D N LP LQ L+L +NR
Sbjct: 465 VTHLDLSHNRLRA-LPPALAALRCLEVLQASDNALENVDGVAN----LPRLQELLLCNNR 519
Query: 123 FWGPIGENTTIVPF---PSLRIIDLSHNEFT 150
+ ++ I P P L +++L N
Sbjct: 520 ----LQQSAAIQPLVSCPRLVLLNLQGNSLC 546
>pdb|1LTX|A Chain A, Structure Of Rab Escort Protein-1 In Complex With Rab
Geranylgeranyl Transferase And Isoprenoid
Length = 567
Score = 36.6 bits (83), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 45/91 (49%), Gaps = 14/91 (15%)
Query: 65 LTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQIN--DNFPNWLEILPELQVLILRSNR 122
+T L+L+ NRL LPP+L LEVL +N + D N LP LQ L+L +NR
Sbjct: 465 VTHLDLSHNRLRA-LPPALAALRCLEVLQASDNALENVDGVAN----LPRLQELLLCNNR 519
Query: 123 FWGPIGENTTIVPF---PSLRIIDLSHNEFT 150
+ ++ I P P L +++L N
Sbjct: 520 ----LQQSAAIQPLVSCPRLVLLNLQGNSLC 546
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 35.8 bits (81), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 53/191 (27%), Positives = 80/191 (41%), Gaps = 46/191 (24%)
Query: 3 DLGIATLYYLDL--------SNNF--LTNIEY--FPPTNMTQLN-------------FDS 37
D G +L YLDL S+NF L +E+ F +N+ Q++ D
Sbjct: 74 DFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDI 133
Query: 38 NLTH---------------KVLDMRMNNFNGK-IPRKFVKSCNLTSLNLNGNRLEGPLPP 81
+ TH +VL M N+F +P F + NLT L+L+ +LE P
Sbjct: 134 SHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPT 193
Query: 82 SLVNCHHLEVLNVGNNQIN--DNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSL 139
+ + L+VLN+ +N D FP + L LQVL N + P SL
Sbjct: 194 AFNSLSSLQVLNMSHNNFFSLDTFP--YKCLNSLQVLDYSLNHIMTSKKQELQHFP-SSL 250
Query: 140 RIIDLSHNEFT 150
++L+ N+F
Sbjct: 251 AFLNLTQNDFA 261
Score = 28.9 bits (63), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 21/39 (53%)
Query: 210 IDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGLCGFP 248
+DLS + + P L+ L+ LN+SHNN L FP
Sbjct: 180 LDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFP 218
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 35.8 bits (81), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 53/191 (27%), Positives = 80/191 (41%), Gaps = 46/191 (24%)
Query: 3 DLGIATLYYLDLS--------NNFL--TNIEY--FPPTNMTQLN-------------FDS 37
D G +L YLDLS +NFL +E+ F +N+ Q++ D
Sbjct: 369 DFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDI 428
Query: 38 NLTH---------------KVLDMRMNNFNGK-IPRKFVKSCNLTSLNLNGNRLEGPLPP 81
+ TH +VL M N+F +P F + NLT L+L+ +LE P
Sbjct: 429 SHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPT 488
Query: 82 SLVNCHHLEVLNVGNNQIN--DNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSL 139
+ + L+VLN+ +N D FP + L LQVL N + P SL
Sbjct: 489 AFNSLSSLQVLNMSHNNFFSLDTFP--YKCLNSLQVLDYSLNHIMTSKKQELQHFP-SSL 545
Query: 140 RIIDLSHNEFT 150
++L+ N+F
Sbjct: 546 AFLNLTQNDFA 556
Score = 28.9 bits (63), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 21/39 (53%)
Query: 210 IDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGLCGFP 248
+DLS + + P L+ L+ LN+SHNN L FP
Sbjct: 475 LDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFP 513
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 35.4 bits (80), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 56/131 (42%), Gaps = 13/131 (9%)
Query: 5 GIATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCN 64
G+ L Y+ +++ +T I P ++T+L+ D N KV + N N
Sbjct: 169 GMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLN-----------N 217
Query: 65 LTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFW 124
L L L+ N + SL N HL L++ NN++ P L +QV+ L +N
Sbjct: 218 LAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKL-VKVPGGLADHKYIQVVYLHNNNIS 276
Query: 125 GPIGENTTIVP 135
IG N P
Sbjct: 277 A-IGSNDFCPP 286
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 35.4 bits (80), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 56/131 (42%), Gaps = 13/131 (9%)
Query: 5 GIATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCN 64
G+ L Y+ +++ +T I P ++T+L+ D N KV + N N
Sbjct: 169 GMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLN-----------N 217
Query: 65 LTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFW 124
L L L+ N + SL N HL L++ NN++ P L +QV+ L +N
Sbjct: 218 LAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKL-VKVPGGLADHKYIQVVYLHNNNIS 276
Query: 125 GPIGENTTIVP 135
IG N P
Sbjct: 277 A-IGSNDFCPP 286
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 35.4 bits (80), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 53/191 (27%), Positives = 80/191 (41%), Gaps = 46/191 (24%)
Query: 3 DLGIATLYYLDLS--------NNFL--TNIEY--FPPTNMTQLN-------------FDS 37
D G +L YLDLS +NFL +E+ F +N+ Q++ D
Sbjct: 393 DFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDI 452
Query: 38 NLTH---------------KVLDMRMNNFNGK-IPRKFVKSCNLTSLNLNGNRLEGPLPP 81
+ TH +VL M N+F +P F + NLT L+L+ +LE P
Sbjct: 453 SHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPT 512
Query: 82 SLVNCHHLEVLNVGNNQIN--DNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSL 139
+ + L+VLN+ +N D FP + L LQVL N + P SL
Sbjct: 513 AFNSLSSLQVLNMSHNNFFSLDTFP--YKCLNSLQVLDYSLNHIMTSKKQELQHFP-SSL 569
Query: 140 RIIDLSHNEFT 150
++L+ N+F
Sbjct: 570 AFLNLTQNDFA 580
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 21/39 (53%)
Query: 210 IDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGLCGFP 248
+DLS + + P L+ L+ LN+SHNN L FP
Sbjct: 499 LDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFP 537
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 35.0 bits (79), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 51/185 (27%), Positives = 78/185 (42%), Gaps = 32/185 (17%)
Query: 64 NLTSLNLNGNRLEGPLPPSLVN--CHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSN 121
N+ + ++G R+ L PS ++ H L+ NN + D L EL+ LIL+ N
Sbjct: 303 NIKNFTVSGTRMVHMLCPSKISPFLH----LDFSNNLLTDTVFENCGHLTELETLILQMN 358
Query: 122 RF--WGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTP 179
+ I E TT SL+ +D+S N + G K+++ N
Sbjct: 359 QLKELSKIAEMTT--QMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNM---------- 406
Query: 180 LNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHN 239
SSN I IK+ +DL SNK + IP+ V KL L+ LN++ N
Sbjct: 407 --SSNILTDTIFRCLPPRIKV---------LDLHSNKIKS-IPKQVVKLEALQELNVASN 454
Query: 240 NLTGL 244
L +
Sbjct: 455 QLKSV 459
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 34.3 bits (77), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 38/80 (47%)
Query: 44 LDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNF 103
L+++ N G P F + ++ L L N+++ + H L+ LN+ +NQI+
Sbjct: 59 LELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVM 118
Query: 104 PNWLEILPELQVLILRSNRF 123
P E L L L L SN F
Sbjct: 119 PGSFEHLNSLTSLNLASNPF 138
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 31/60 (51%)
Query: 64 NLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRF 123
N+T LNL N+L P + L +L+ G N I+ P +ILP L+VL L+ N
Sbjct: 26 NITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPELCQILPLLKVLNLQHNEL 85
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 44/160 (27%), Positives = 69/160 (43%), Gaps = 41/160 (25%)
Query: 3 DLGIATLYYLDLS--------NNFL--TNIEY--FPPTNMTQLN-------------FDS 37
D G +L YLDLS +NFL +E+ F +N+ Q++ D
Sbjct: 369 DFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDI 428
Query: 38 NLTH---------------KVLDMRMNNFNGK-IPRKFVKSCNLTSLNLNGNRLEGPLPP 81
+ TH +VL M N+F +P F + NLT L+L+ +LE P
Sbjct: 429 SHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPT 488
Query: 82 SLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSN 121
+ + L+VLN+ +NQ+ + L LQ + L +N
Sbjct: 489 AFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTN 528
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 33.1 bits (74), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 41/144 (28%), Positives = 66/144 (45%), Gaps = 22/144 (15%)
Query: 27 PTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNC 86
PT T L+ ++K L + IPR ++T L L+GN+ +P L N
Sbjct: 5 PTECTCLDTVVRCSNKGLKV----LPKGIPR------DVTELYLDGNQFTL-VPKELSNY 53
Query: 87 HHLEVLNVGNNQI----NDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRII 142
HL ++++ NN+I N +F N ++L LIL NR T SLR++
Sbjct: 54 KHLTLIDLSNNRISTLSNQSFSNMTQLL----TLILSYNRLR--CIPPRTFDGLKSLRLL 107
Query: 143 DLSHNEFTGVLLTGYLDNFKAMMH 166
L N+ + V+ G ++ A+ H
Sbjct: 108 SLHGNDIS-VVPEGAFNDLSALSH 130
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 33.1 bits (74), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 62/145 (42%), Gaps = 15/145 (10%)
Query: 110 LPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYL-DNFKAMMHGN 168
+P LQ+LIL NRF G+ T PSL + L N T D F+ + H
Sbjct: 425 VPHLQILILNQNRFSSCSGDQTP-SENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQ 483
Query: 169 NISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTI--------FMTIDLSSNKFQGG 220
+ + +Y+ L + S + ++G+ + R+ + +D+S N+
Sbjct: 484 VLYLNHNYLNSLPPGVF--SHLTALRGLSLNSNRLTVLSHNDLPANLEILDISRNQLLAP 541
Query: 221 IPEVVGKLNLLKGLNISHNNLTGLC 245
P+V L++ L+I+HN C
Sbjct: 542 NPDVFVSLSV---LDITHNKFICEC 563
>pdb|2FL4|A Chain A, The Crystal Structure Of The SpermineSPERMIDINE
ACETYLTRANSFERASE From Enterococcus Faecalis
Length = 149
Score = 32.7 bits (73), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 37/91 (40%), Gaps = 19/91 (20%)
Query: 240 NLTGLCGFPLLESCNIDEAPEPVGSTRFDEEEDASSWFD-----WKFAKMGYGSGLVIGL 294
NL FP ES I + + +G + +D W D +F GYG L
Sbjct: 36 NLKESDQFPEWESAGIYDGNQLIGYAMYGRWQDGRVWLDRFLIDQRFQGQGYGKAACRLL 95
Query: 295 SVGYMVFGTGKPRWLVRMIEKYQSNKVRIRV 325
++++IEKYQ+NK+ + V
Sbjct: 96 --------------MLKLIEKYQTNKLYLSV 112
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 31.2 bits (69), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 61/220 (27%), Positives = 104/220 (47%), Gaps = 21/220 (9%)
Query: 6 IATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTH-KVLDMRMNNFNGKIPRKFVKSCN 64
+ L LDLS+N +IE ++ QL NL+H + L++ N G + F +
Sbjct: 346 LGNLQTLDLSHN---DIEASDCCSL-QL---KNLSHLQTLNLSHNEPLGLQSQAFKECPQ 398
Query: 65 LTSLNLNGNRLEGPLPPS-LVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRF 123
L L+L RL P S N H L+VLN+ ++ + + L LP L+ L L+ N F
Sbjct: 399 LELLDLAFTRLHINAPQSPFQNLHFLQVLNLTYCFLDTSNQHLLAGLPVLRHLNLKGNHF 458
Query: 124 W-GPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMT--PL 180
G I + + SL ++ LS + LL+ F ++ +++ + + +T +
Sbjct: 459 QDGTITKTNLLQTVGSLEVLILS----SCGLLSIDQQAFHSLGKMSHVDLSHNSLTCDSI 514
Query: 181 NSSNYYESIILTIKG--IDIKMERILTIF---MTIDLSSN 215
+S ++ + I L + I+I R+L I TI+LS N
Sbjct: 515 DSLSHLKGIYLNLAANSINIISPRLLPILSQQSTINLSHN 554
Score = 27.7 bits (60), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 38/75 (50%), Gaps = 12/75 (16%)
Query: 6 IATLYYLDLSNNFLTNIEY---FPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKS 62
+ L L L +N +++I++ FP N+ L+F +N H + M R ++
Sbjct: 125 LENLESLYLGSNHISSIKFPKDFPARNLKVLDFQNNAIHYISREDM--------RSLEQA 176
Query: 63 CNLTSLNLNGNRLEG 77
NL SLN NGN ++G
Sbjct: 177 INL-SLNFNGNNVKG 190
>pdb|1F52|A Chain A, Crystal Structure Of Glutamine Synthetase From Salmonella
Typhimurium Co-Crystallized With Adp
pdb|1F52|B Chain B, Crystal Structure Of Glutamine Synthetase From Salmonella
Typhimurium Co-Crystallized With Adp
pdb|1F52|C Chain C, Crystal Structure Of Glutamine Synthetase From Salmonella
Typhimurium Co-Crystallized With Adp
pdb|1F52|D Chain D, Crystal Structure Of Glutamine Synthetase From Salmonella
Typhimurium Co-Crystallized With Adp
pdb|1F52|E Chain E, Crystal Structure Of Glutamine Synthetase From Salmonella
Typhimurium Co-Crystallized With Adp
pdb|1F52|F Chain F, Crystal Structure Of Glutamine Synthetase From Salmonella
Typhimurium Co-Crystallized With Adp
pdb|1F52|G Chain G, Crystal Structure Of Glutamine Synthetase From Salmonella
Typhimurium Co-Crystallized With Adp
pdb|1F52|H Chain H, Crystal Structure Of Glutamine Synthetase From Salmonella
Typhimurium Co-Crystallized With Adp
pdb|1F52|I Chain I, Crystal Structure Of Glutamine Synthetase From Salmonella
Typhimurium Co-Crystallized With Adp
pdb|1F52|J Chain J, Crystal Structure Of Glutamine Synthetase From Salmonella
Typhimurium Co-Crystallized With Adp
pdb|1F52|K Chain K, Crystal Structure Of Glutamine Synthetase From Salmonella
Typhimurium Co-Crystallized With Adp
pdb|1F52|L Chain L, Crystal Structure Of Glutamine Synthetase From Salmonella
Typhimurium Co-Crystallized With Adp
pdb|1F1H|A Chain A, Crystal Structure Of Glutamine Synthetase From Salmonella
Typhimurium With Thallium Ions
pdb|1F1H|B Chain B, Crystal Structure Of Glutamine Synthetase From Salmonella
Typhimurium With Thallium Ions
pdb|1F1H|C Chain C, Crystal Structure Of Glutamine Synthetase From Salmonella
Typhimurium With Thallium Ions
pdb|1F1H|D Chain D, Crystal Structure Of Glutamine Synthetase From Salmonella
Typhimurium With Thallium Ions
pdb|1F1H|E Chain E, Crystal Structure Of Glutamine Synthetase From Salmonella
Typhimurium With Thallium Ions
pdb|1F1H|F Chain F, Crystal Structure Of Glutamine Synthetase From Salmonella
Typhimurium With Thallium Ions
pdb|1F1H|G Chain G, Crystal Structure Of Glutamine Synthetase From Salmonella
Typhimurium With Thallium Ions
pdb|1F1H|H Chain H, Crystal Structure Of Glutamine Synthetase From Salmonella
Typhimurium With Thallium Ions
pdb|1F1H|I Chain I, Crystal Structure Of Glutamine Synthetase From Salmonella
Typhimurium With Thallium Ions
pdb|1F1H|J Chain J, Crystal Structure Of Glutamine Synthetase From Salmonella
Typhimurium With Thallium Ions
pdb|1F1H|K Chain K, Crystal Structure Of Glutamine Synthetase From Salmonella
Typhimurium With Thallium Ions
pdb|1F1H|L Chain L, Crystal Structure Of Glutamine Synthetase From Salmonella
Typhimurium With Thallium Ions
pdb|1FPY|A Chain A, Crystal Structure Of Glutamine Synthetase From Salmonella
Typhimurium With Inhibitor Phosphinothricin
pdb|1FPY|B Chain B, Crystal Structure Of Glutamine Synthetase From Salmonella
Typhimurium With Inhibitor Phosphinothricin
pdb|1FPY|C Chain C, Crystal Structure Of Glutamine Synthetase From Salmonella
Typhimurium With Inhibitor Phosphinothricin
pdb|1FPY|D Chain D, Crystal Structure Of Glutamine Synthetase From Salmonella
Typhimurium With Inhibitor Phosphinothricin
pdb|1FPY|E Chain E, Crystal Structure Of Glutamine Synthetase From Salmonella
Typhimurium With Inhibitor Phosphinothricin
pdb|1FPY|F Chain F, Crystal Structure Of Glutamine Synthetase From Salmonella
Typhimurium With Inhibitor Phosphinothricin
pdb|1FPY|G Chain G, Crystal Structure Of Glutamine Synthetase From Salmonella
Typhimurium With Inhibitor Phosphinothricin
pdb|1FPY|H Chain H, Crystal Structure Of Glutamine Synthetase From Salmonella
Typhimurium With Inhibitor Phosphinothricin
pdb|1FPY|I Chain I, Crystal Structure Of Glutamine Synthetase From Salmonella
Typhimurium With Inhibitor Phosphinothricin
pdb|1FPY|J Chain J, Crystal Structure Of Glutamine Synthetase From Salmonella
Typhimurium With Inhibitor Phosphinothricin
pdb|1FPY|K Chain K, Crystal Structure Of Glutamine Synthetase From Salmonella
Typhimurium With Inhibitor Phosphinothricin
pdb|1FPY|L Chain L, Crystal Structure Of Glutamine Synthetase From Salmonella
Typhimurium With Inhibitor Phosphinothricin
pdb|1LGR|A Chain A, Interactions Of Nucleotides With Fully Unadenylylated
Glutamine Synthetase From Salmonella Typhimurium
pdb|1LGR|B Chain B, Interactions Of Nucleotides With Fully Unadenylylated
Glutamine Synthetase From Salmonella Typhimurium
pdb|1LGR|C Chain C, Interactions Of Nucleotides With Fully Unadenylylated
Glutamine Synthetase From Salmonella Typhimurium
pdb|1LGR|D Chain D, Interactions Of Nucleotides With Fully Unadenylylated
Glutamine Synthetase From Salmonella Typhimurium
pdb|1LGR|E Chain E, Interactions Of Nucleotides With Fully Unadenylylated
Glutamine Synthetase From Salmonella Typhimurium
pdb|1LGR|F Chain F, Interactions Of Nucleotides With Fully Unadenylylated
Glutamine Synthetase From Salmonella Typhimurium
pdb|1LGR|G Chain G, Interactions Of Nucleotides With Fully Unadenylylated
Glutamine Synthetase From Salmonella Typhimurium
pdb|1LGR|H Chain H, Interactions Of Nucleotides With Fully Unadenylylated
Glutamine Synthetase From Salmonella Typhimurium
pdb|1LGR|I Chain I, Interactions Of Nucleotides With Fully Unadenylylated
Glutamine Synthetase From Salmonella Typhimurium
pdb|1LGR|J Chain J, Interactions Of Nucleotides With Fully Unadenylylated
Glutamine Synthetase From Salmonella Typhimurium
pdb|1LGR|K Chain K, Interactions Of Nucleotides With Fully Unadenylylated
Glutamine Synthetase From Salmonella Typhimurium
pdb|1LGR|L Chain L, Interactions Of Nucleotides With Fully Unadenylylated
Glutamine Synthetase From Salmonella Typhimurium
pdb|2LGS|A Chain A, Feedback Inhibition Of Fully Unadenylylated Glutamine
Synthetase From Salmonella Typhimurium By Glycine,
Alanine, And Serine
pdb|2LGS|B Chain B, Feedback Inhibition Of Fully Unadenylylated Glutamine
Synthetase From Salmonella Typhimurium By Glycine,
Alanine, And Serine
pdb|2LGS|C Chain C, Feedback Inhibition Of Fully Unadenylylated Glutamine
Synthetase From Salmonella Typhimurium By Glycine,
Alanine, And Serine
pdb|2LGS|D Chain D, Feedback Inhibition Of Fully Unadenylylated Glutamine
Synthetase From Salmonella Typhimurium By Glycine,
Alanine, And Serine
pdb|2LGS|E Chain E, Feedback Inhibition Of Fully Unadenylylated Glutamine
Synthetase From Salmonella Typhimurium By Glycine,
Alanine, And Serine
pdb|2LGS|F Chain F, Feedback Inhibition Of Fully Unadenylylated Glutamine
Synthetase From Salmonella Typhimurium By Glycine,
Alanine, And Serine
pdb|2LGS|G Chain G, Feedback Inhibition Of Fully Unadenylylated Glutamine
Synthetase From Salmonella Typhimurium By Glycine,
Alanine, And Serine
pdb|2LGS|H Chain H, Feedback Inhibition Of Fully Unadenylylated Glutamine
Synthetase From Salmonella Typhimurium By Glycine,
Alanine, And Serine
pdb|2LGS|I Chain I, Feedback Inhibition Of Fully Unadenylylated Glutamine
Synthetase From Salmonella Typhimurium By Glycine,
Alanine, And Serine
pdb|2LGS|J Chain J, Feedback Inhibition Of Fully Unadenylylated Glutamine
Synthetase From Salmonella Typhimurium By Glycine,
Alanine, And Serine
pdb|2LGS|K Chain K, Feedback Inhibition Of Fully Unadenylylated Glutamine
Synthetase From Salmonella Typhimurium By Glycine,
Alanine, And Serine
pdb|2LGS|L Chain L, Feedback Inhibition Of Fully Unadenylylated Glutamine
Synthetase From Salmonella Typhimurium By Glycine,
Alanine, And Serine
Length = 468
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/55 (25%), Positives = 23/55 (41%)
Query: 83 LVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFP 137
+V HH EV G N++ F + E+Q+ + G+ T +P P
Sbjct: 205 VVEAHHHEVATAGQNEVATRFNTMTKKADEIQIYKYVVHNVAHRFGKTATFMPKP 259
>pdb|2GLS|A Chain A, Refined Atomic Model Of Glutamine Synthetase At 3.5
Angstroms Resolution
pdb|2GLS|B Chain B, Refined Atomic Model Of Glutamine Synthetase At 3.5
Angstroms Resolution
pdb|2GLS|C Chain C, Refined Atomic Model Of Glutamine Synthetase At 3.5
Angstroms Resolution
pdb|2GLS|D Chain D, Refined Atomic Model Of Glutamine Synthetase At 3.5
Angstroms Resolution
pdb|2GLS|E Chain E, Refined Atomic Model Of Glutamine Synthetase At 3.5
Angstroms Resolution
pdb|2GLS|F Chain F, Refined Atomic Model Of Glutamine Synthetase At 3.5
Angstroms Resolution
pdb|2GLS|G Chain G, Refined Atomic Model Of Glutamine Synthetase At 3.5
Angstroms Resolution
pdb|2GLS|H Chain H, Refined Atomic Model Of Glutamine Synthetase At 3.5
Angstroms Resolution
pdb|2GLS|I Chain I, Refined Atomic Model Of Glutamine Synthetase At 3.5
Angstroms Resolution
pdb|2GLS|J Chain J, Refined Atomic Model Of Glutamine Synthetase At 3.5
Angstroms Resolution
pdb|2GLS|K Chain K, Refined Atomic Model Of Glutamine Synthetase At 3.5
Angstroms Resolution
pdb|2GLS|L Chain L, Refined Atomic Model Of Glutamine Synthetase At 3.5
Angstroms Resolution
Length = 469
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/55 (25%), Positives = 23/55 (41%)
Query: 83 LVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFP 137
+V HH EV G N++ F + E+Q+ + G+ T +P P
Sbjct: 206 VVEAHHHEVATAGQNEVATRFNTMTKKADEIQIYKYVVHNVAHRFGKTATFMPKP 260
>pdb|4IFD|G Chain G, Crystal Structure Of An 11-subunit Eukaryotic Exosome
Complex Bound To Rna
Length = 242
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 2/81 (2%)
Query: 104 PNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKA 163
PN EI P ++ S + G G T + + S R I ++ GV++ + D++K
Sbjct: 31 PNTQEIRPVNTGVLHVSAK--GKSGVQTAYIDYSSKRYIPSVNDFVIGVIIGTFSDSYKV 88
Query: 164 MMHGNNISVEVDYMTPLNSSN 184
+ + SV + YM N+S
Sbjct: 89 SLQNFSSSVSLSYMAFPNASK 109
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 35/76 (46%), Gaps = 5/76 (6%)
Query: 79 LPPSLVNCH--HLEVLNVGNNQINDNF---PNWLEILPELQVLILRSNRFWGPIGENTTI 133
L P L++ H LE L++ N + + + + P LQ LILR N T+
Sbjct: 324 LVPCLLSQHLKSLEYLDLSENLMVEEYLKNSACEDAWPSLQTLILRQNHLASLEKTGETL 383
Query: 134 VPFPSLRIIDLSHNEF 149
+ +L ID+S N F
Sbjct: 384 LTLKNLTNIDISKNSF 399
>pdb|2JE0|A Chain A, Crystal Structure Of Pp32
pdb|2JE0|B Chain B, Crystal Structure Of Pp32
pdb|2JE0|C Chain C, Crystal Structure Of Pp32
pdb|2JE0|D Chain D, Crystal Structure Of Pp32
pdb|2JE0|E Chain E, Crystal Structure Of Pp32
pdb|2JE0|F Chain F, Crystal Structure Of Pp32
pdb|2JE1|A Chain A, The Crystal Structure Of The Tumor Supressor Protein Pp32
( Anp32a):structural Insights Into The Anp32 Family Of
Proteins
pdb|2JE1|B Chain B, The Crystal Structure Of The Tumor Supressor Protein Pp32
( Anp32a):structural Insights Into The Anp32 Family Of
Proteins
pdb|2JE1|C Chain C, The Crystal Structure Of The Tumor Supressor Protein Pp32
( Anp32a):structural Insights Into The Anp32 Family Of
Proteins
pdb|2JE1|D Chain D, The Crystal Structure Of The Tumor Supressor Protein Pp32
( Anp32a):structural Insights Into The Anp32 Family Of
Proteins
Length = 149
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 6/73 (8%)
Query: 49 NNFNGKIPRKFVKSCNLTSLNLNGNRLEG-----PLPPSLVNCHHLEVLNVGNNQINDNF 103
N +G + K NLT LNL+GN+++ PL L N L++ N +ND
Sbjct: 74 NRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPL-KKLENLKSLDLFNCEVTNLNDYR 132
Query: 104 PNWLEILPELQVL 116
N ++LP+L L
Sbjct: 133 ENVFKLLPQLTYL 145
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 28.9 bits (63), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 60/143 (41%), Gaps = 15/143 (10%)
Query: 13 DLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRK-FVKSCNLTSLNLN 71
D S+ LT + PTN+T LN LTH L ++P F + LTSL++
Sbjct: 10 DCSHLKLTQVPDDLPTNITVLN----LTHNQL--------RRLPAANFTRYSQLTSLDVG 57
Query: 72 GNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENT 131
N + P L+VLN+ +N+++ L L L SN +N
Sbjct: 58 FNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKI--KNN 115
Query: 132 TIVPFPSLRIIDLSHNEFTGVLL 154
V +L +DLSHN + L
Sbjct: 116 PFVKQKNLITLDLSHNGLSSTKL 138
Score = 27.7 bits (60), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 21/36 (58%)
Query: 209 TIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGL 244
++D+ N PE+ KL +LK LN+ HN L+ L
Sbjct: 53 SLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQL 88
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 60/143 (41%), Gaps = 15/143 (10%)
Query: 13 DLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRK-FVKSCNLTSLNLN 71
D S+ LT + PTN+T LN LTH L ++P F + LTSL++
Sbjct: 20 DCSHLKLTQVPDDLPTNITVLN----LTHNQLR--------RLPAANFTRYSQLTSLDVG 67
Query: 72 GNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENT 131
N + P L+VLN+ +N+++ L L L SN +N
Sbjct: 68 FNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKI--KNN 125
Query: 132 TIVPFPSLRIIDLSHNEFTGVLL 154
V +L +DLSHN + L
Sbjct: 126 PFVKQKNLITLDLSHNGLSSTKL 148
Score = 27.7 bits (60), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 21/36 (58%)
Query: 209 TIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGL 244
++D+ N PE+ KL +LK LN+ HN L+ L
Sbjct: 63 SLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQL 98
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 60/143 (41%), Gaps = 15/143 (10%)
Query: 13 DLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRK-FVKSCNLTSLNLN 71
D S+ LT + PTN+T LN LTH L ++P F + LTSL++
Sbjct: 15 DCSHLKLTQVPDDLPTNITVLN----LTHNQL--------RRLPAANFTRYSQLTSLDVG 62
Query: 72 GNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENT 131
N + P L+VLN+ +N+++ L L L SN +N
Sbjct: 63 FNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKI--KNN 120
Query: 132 TIVPFPSLRIIDLSHNEFTGVLL 154
V +L +DLSHN + L
Sbjct: 121 PFVKQKNLITLDLSHNGLSSTKL 143
Score = 27.7 bits (60), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 21/36 (58%)
Query: 209 TIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGL 244
++D+ N PE+ KL +LK LN+ HN L+ L
Sbjct: 58 SLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQL 93
>pdb|3BZ5|A Chain A, Functional Domain Of Inlj From Listeria Monocytogenes
Includes A Cysteine Ladder
Length = 457
Score = 28.5 bits (62), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 9 LYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMN 49
L YL +N LTN++ P T +T LN D+N K LD+ N
Sbjct: 87 LTYLACDSNKLTNLDVTPLTKLTYLNCDTNKLTK-LDVSQN 126
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 28.1 bits (61), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 74/177 (41%), Gaps = 42/177 (23%)
Query: 9 LYYLDLSNNFLTNIE---YFPPTNMTQLNFDSN-LTHKVLDMRMNNFNGKIPRKFVKSC- 63
L L +SNN L IE + T++ L SN LTH L + + F+ + + +
Sbjct: 149 LTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLA 208
Query: 64 ------NLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQIND-----NFPNWLEI--- 109
L + + + N + GP VN L +L + +N + D N+P +E+
Sbjct: 209 IPIAVEELDASHNSINVVRGP-----VNVE-LTILKLQHNNLTDTAWLLNYPGLVEVDLS 262
Query: 110 --------------LPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGV 152
+ L+ L + +NR + N P P+L+++DLSHN V
Sbjct: 263 YNELEKIMYHPFVKMQRLERLYISNNRL---VALNLYGQPIPTLKVLDLSHNHLLHV 316
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 28.1 bits (61), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 40/84 (47%), Gaps = 4/84 (4%)
Query: 43 VLDMRMNNFNGKIPRKFVKSC-NLTSLNLNGNRLEGPLPPSLVN-CHHLEVLNVGNNQIN 100
VLD+ N +P ++ L L L GN L+ LPP L+ LE L++ NNQ+
Sbjct: 104 VLDVSFNRLTS-LPLGALRGLGELQELYLKGNELKT-LPPGLLTPTPKLEKLSLANNQLT 161
Query: 101 DNFPNWLEILPELQVLILRSNRFW 124
+ L L L L+L+ N +
Sbjct: 162 ELPAGLLNGLENLDTLLLQENSLY 185
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 28.1 bits (61), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 41/83 (49%), Gaps = 12/83 (14%)
Query: 6 IATLYYLDLSNNFLTNI---EYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKS 62
+ L L L +N +++I E FP N+ L+F +N H + + K ++
Sbjct: 127 LENLESLHLGSNHISSINLPENFPTQNLKVLDFQNNAIHYI--------SRKDTNSLEQA 178
Query: 63 CNLTSLNLNGNRLEGPLPPSLVN 85
NL SLN NGN ++G P + ++
Sbjct: 179 TNL-SLNFNGNDIKGIEPGAFIS 200
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 28.1 bits (61), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 49/111 (44%), Gaps = 10/111 (9%)
Query: 42 KVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQIND 101
K LD+ P NL L L+ N++ P L +L+ L++GNNQ+ND
Sbjct: 116 KTLDLTSTQITDVTP--LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNNQVND 171
Query: 102 NFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGV 152
P L L +L L N+ I + + + P+L + L N+ + V
Sbjct: 172 LTP--LANLSKLTTLRADDNK----ISDISPLASLPNLIEVHLKDNQISDV 216
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 28.1 bits (61), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 40/84 (47%), Gaps = 4/84 (4%)
Query: 43 VLDMRMNNFNGKIPRKFVKSC-NLTSLNLNGNRLEGPLPPSLVN-CHHLEVLNVGNNQIN 100
VLD+ N +P ++ L L L GN L+ LPP L+ LE L++ NNQ+
Sbjct: 104 VLDVSFNRLTS-LPLGALRGLGELQELYLKGNELKT-LPPGLLTPTPKLEKLSLANNQLT 161
Query: 101 DNFPNWLEILPELQVLILRSNRFW 124
+ L L L L+L+ N +
Sbjct: 162 ELPAGLLNGLENLDTLLLQENSLY 185
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 27.7 bits (60), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 73/174 (41%), Gaps = 42/174 (24%)
Query: 12 LDLSNNFLTNIE---YFPPTNMTQLNFDSN-LTHKVLDMRMNNFNGKIPRKFVKSC---- 63
L +SNN L IE + T++ L SN LTH L + + F+ + + +
Sbjct: 146 LSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPI 205
Query: 64 ---NLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQIND-----NFPNWLEI------ 109
L + + + N + GP VN L +L + +N + D N+P +E+
Sbjct: 206 AVEELDASHNSINVVRGP-----VNVE-LTILKLQHNNLTDTAWLLNYPGLVEVDLSYNE 259
Query: 110 -----------LPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGV 152
+ L+ L + +NR + N P P+L+++DLSHN V
Sbjct: 260 LEKIMYHPFVKMQRLERLYISNNRL---VALNLYGQPIPTLKVLDLSHNHLLHV 310
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 27.7 bits (60), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 86/180 (47%), Gaps = 23/180 (12%)
Query: 5 GIATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDM----RMNNFNGKIPRKFV 60
G+ +L L+ S+N +T+++ P N+T L ++KV D+ ++ N I
Sbjct: 149 GLTSLQQLNFSSNQVTDLK--PLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQ 206
Query: 61 KS--------CNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPE 112
S NL L+LNGN+L+ +L + +L L++ NNQI++ P L L +
Sbjct: 207 ISDITPLGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP--LSGLTK 262
Query: 113 LQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAM-MHGNNIS 171
L L L +N+ I + + +L ++L+ N+ + L N + ++ NNIS
Sbjct: 263 LTELKLGANQ----ISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNIS 318
>pdb|3O53|A Chain A, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
pdb|3O53|B Chain B, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
Length = 317
Score = 27.7 bits (60), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 74/184 (40%), Gaps = 33/184 (17%)
Query: 64 NLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRF 123
N+ L+L+GN L L LE+LN+ +N + + LE L L+ L L +N
Sbjct: 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYV 92
Query: 124 WGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTG-------YLDNFKAMM-----HGNNIS 171
++ PS+ + ++N + V + YL N K M G
Sbjct: 93 Q-------ELLVGPSIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSR 145
Query: 172 VE-----------VDYMTPLNSSNYYESIILTIKGI-DIKMERILTIFMTIDLSSNKFQG 219
V+ V++ SS+ E + L I D+K + + T+DLSSNK
Sbjct: 146 VQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAF 205
Query: 220 GIPE 223
PE
Sbjct: 206 MGPE 209
>pdb|4F0D|A Chain A, Human Artd15PARP16 IN COMPLEX WITH 3-Aminobenzamide
pdb|4F0D|B Chain B, Human Artd15PARP16 IN COMPLEX WITH 3-Aminobenzamide
Length = 277
Score = 27.7 bits (60), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 31/74 (41%), Gaps = 2/74 (2%)
Query: 17 NFLTNIEYFPPTNMT--QLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNR 74
+FL IEYF P N + + +L + R+ NF+ I N TSL G
Sbjct: 121 DFLFEIEYFDPANAKFYETKGERDLIYAFHGSRLENFHSIIHNGLHCHLNKTSLFGEGTY 180
Query: 75 LEGPLPPSLVNCHH 88
L L +L+ H
Sbjct: 181 LTSDLSLALIYSPH 194
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 27.7 bits (60), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 40/84 (47%), Gaps = 4/84 (4%)
Query: 43 VLDMRMNNFNGKIPRKFVKSC-NLTSLNLNGNRLEGPLPPSLVN-CHHLEVLNVGNNQIN 100
VLD+ N +P ++ L L L GN L+ LPP L+ LE L++ NNQ+
Sbjct: 104 VLDVSFNRLTS-LPLGALRGLGELQELYLKGNELKT-LPPGLLTPTPKLEKLSLANNQLT 161
Query: 101 DNFPNWLEILPELQVLILRSNRFW 124
+ L L L L+L+ N +
Sbjct: 162 ELPAGLLNGLENLDTLLLQENSLY 185
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.139 0.426
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,544,810
Number of Sequences: 62578
Number of extensions: 462469
Number of successful extensions: 1301
Number of sequences better than 100.0: 117
Number of HSP's better than 100.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 73
Number of HSP's that attempted gapping in prelim test: 992
Number of HSP's gapped (non-prelim): 280
length of query: 334
length of database: 14,973,337
effective HSP length: 99
effective length of query: 235
effective length of database: 8,778,115
effective search space: 2062857025
effective search space used: 2062857025
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)