Query 019924
Match_columns 334
No_of_seqs 502 out of 2868
Neff 10.0
Searched_HMMs 46136
Date Fri Mar 29 05:37:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019924.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019924hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 99.9 8.5E-26 1.8E-30 229.6 15.9 235 5-242 91-369 (968)
2 PLN00113 leucine-rich repeat r 99.9 1.4E-25 3E-30 228.1 15.8 236 5-243 116-394 (968)
3 KOG4194 Membrane glycoprotein 99.9 1.8E-24 3.9E-29 194.3 3.3 236 4-242 99-354 (873)
4 KOG4194 Membrane glycoprotein 99.9 2.6E-23 5.5E-28 187.0 2.3 232 7-242 173-429 (873)
5 KOG0444 Cytoskeletal regulator 99.8 2E-21 4.4E-26 176.4 -3.0 180 39-242 78-258 (1255)
6 KOG0444 Cytoskeletal regulator 99.8 4.5E-21 9.8E-26 174.1 -2.8 210 6-242 54-304 (1255)
7 KOG0472 Leucine-rich repeat pr 99.8 1.7E-21 3.7E-26 168.3 -6.6 227 9-244 47-290 (565)
8 KOG0472 Leucine-rich repeat pr 99.7 2.6E-19 5.7E-24 154.9 1.1 175 40-242 363-541 (565)
9 PRK15387 E3 ubiquitin-protein 99.7 2.1E-17 4.6E-22 159.4 12.6 40 204-244 421-460 (788)
10 KOG4237 Extracellular matrix p 99.7 1.5E-19 3.3E-24 155.9 -2.4 209 8-245 68-362 (498)
11 PRK15370 E3 ubiquitin-protein 99.7 8E-17 1.7E-21 156.1 12.2 216 7-246 178-405 (754)
12 KOG0617 Ras suppressor protein 99.7 4.9E-19 1.1E-23 136.6 -3.1 104 42-150 36-140 (264)
13 PRK15370 E3 ubiquitin-protein 99.7 3.5E-17 7.6E-22 158.6 8.6 214 7-242 199-428 (754)
14 PLN03210 Resistant to P. syrin 99.7 9.4E-16 2E-20 157.5 16.8 231 7-244 611-885 (1153)
15 PRK15387 E3 ubiquitin-protein 99.7 7.4E-16 1.6E-20 148.8 13.4 211 8-245 202-438 (788)
16 KOG0617 Ras suppressor protein 99.7 2.4E-18 5.2E-23 132.8 -3.8 132 5-150 31-163 (264)
17 KOG0618 Serine/threonine phosp 99.6 6.4E-17 1.4E-21 153.0 1.5 195 40-241 265-488 (1081)
18 PLN03210 Resistant to P. syrin 99.6 1.7E-14 3.8E-19 148.3 15.7 141 5-150 556-717 (1153)
19 cd00116 LRR_RI Leucine-rich re 99.6 8.8E-16 1.9E-20 137.0 5.2 186 39-243 81-292 (319)
20 cd00116 LRR_RI Leucine-rich re 99.6 6.5E-16 1.4E-20 137.8 2.2 219 5-241 49-319 (319)
21 KOG0618 Serine/threonine phosp 99.6 3.2E-16 7E-21 148.4 0.2 139 8-153 178-326 (1081)
22 PLN03150 hypothetical protein; 99.5 1E-14 2.2E-19 140.5 6.2 119 88-254 419-538 (623)
23 KOG4237 Extracellular matrix p 99.5 5.7E-16 1.2E-20 134.1 -2.4 122 42-166 70-192 (498)
24 KOG0532 Leucine-rich repeat (L 99.3 1.1E-13 2.5E-18 125.1 -1.5 170 42-242 78-247 (722)
25 PF14580 LRR_9: Leucine-rich r 99.3 3.9E-12 8.4E-17 101.8 6.5 107 40-152 20-128 (175)
26 PLN03150 hypothetical protein; 99.3 5.4E-12 1.2E-16 121.8 8.5 108 41-149 420-527 (623)
27 COG4886 Leucine-rich repeat (L 99.3 4.6E-12 1E-16 116.5 5.4 173 42-244 119-292 (394)
28 PF14580 LRR_9: Leucine-rich r 99.3 1.5E-12 3.3E-17 104.1 1.5 127 5-144 17-147 (175)
29 KOG1259 Nischarin, modulator o 99.2 1.4E-12 3.1E-17 109.6 1.2 42 204-245 373-415 (490)
30 KOG3207 Beta-tubulin folding c 99.2 1.3E-12 2.8E-17 114.9 0.6 199 5-242 119-339 (505)
31 KOG1259 Nischarin, modulator o 99.2 2.9E-12 6.4E-17 107.8 -0.3 133 63-223 284-416 (490)
32 KOG0532 Leucine-rich repeat (L 99.2 8.8E-13 1.9E-17 119.4 -4.3 138 6-151 74-225 (722)
33 KOG1909 Ran GTPase-activating 99.1 5.2E-12 1.1E-16 108.2 -0.8 195 5-242 90-311 (382)
34 KOG1909 Ran GTPase-activating 99.1 2E-11 4.4E-16 104.7 1.7 198 5-242 28-283 (382)
35 PF13855 LRR_8: Leucine rich r 99.1 7.2E-11 1.6E-15 78.0 3.3 58 41-98 3-60 (61)
36 PF13855 LRR_8: Leucine rich r 99.1 8.5E-11 1.8E-15 77.6 3.3 61 63-123 1-61 (61)
37 KOG3207 Beta-tubulin folding c 99.1 2.2E-11 4.7E-16 107.3 -0.3 149 4-153 143-317 (505)
38 KOG0531 Protein phosphatase 1, 99.0 4.1E-11 8.9E-16 110.7 1.0 178 40-249 96-275 (414)
39 COG4886 Leucine-rich repeat (L 99.0 4.9E-10 1.1E-14 103.1 4.5 114 7-123 116-244 (394)
40 KOG1859 Leucine-rich repeat pr 98.8 3.4E-10 7.4E-15 105.7 -3.8 102 41-151 166-268 (1096)
41 KOG4658 Apoptotic ATPase [Sign 98.7 2.6E-08 5.6E-13 99.0 6.6 83 39-122 571-653 (889)
42 KOG0531 Protein phosphatase 1, 98.5 1.2E-08 2.7E-13 94.3 -0.2 175 40-248 73-252 (414)
43 KOG1859 Leucine-rich repeat pr 98.5 2.4E-09 5.3E-14 100.1 -5.4 127 64-242 165-292 (1096)
44 PF12799 LRR_4: Leucine Rich r 98.4 1.6E-07 3.5E-12 57.0 2.8 41 205-246 1-41 (44)
45 KOG4658 Apoptotic ATPase [Sign 98.4 2.8E-07 6.1E-12 91.7 5.9 107 39-148 545-653 (889)
46 COG5238 RNA1 Ran GTPase-activa 98.4 4.6E-08 1E-12 81.7 -0.3 217 6-245 29-319 (388)
47 KOG4579 Leucine-rich repeat (L 98.4 1.8E-08 3.8E-13 75.6 -3.2 119 42-166 30-152 (177)
48 KOG2120 SCF ubiquitin ligase, 98.3 1.5E-08 3.2E-13 85.7 -5.4 160 40-240 186-349 (419)
49 KOG4579 Leucine-rich repeat (L 98.3 3.3E-08 7.2E-13 74.2 -4.0 105 9-124 29-136 (177)
50 PF12799 LRR_4: Leucine Rich r 98.2 8.6E-07 1.9E-11 53.8 2.4 17 83-99 20-36 (44)
51 KOG1644 U2-associated snRNP A' 98.1 5.2E-06 1.1E-10 66.6 5.9 86 63-151 42-127 (233)
52 KOG2982 Uncharacterized conser 98.1 4.9E-07 1.1E-11 76.6 -0.2 85 39-123 71-158 (418)
53 COG5238 RNA1 Ran GTPase-activa 98.1 6.4E-06 1.4E-10 69.2 6.0 183 40-242 31-255 (388)
54 PRK15386 type III secretion pr 98.0 3.7E-05 7.9E-10 69.5 9.5 117 6-150 51-169 (426)
55 KOG1644 U2-associated snRNP A' 98.0 1E-05 2.3E-10 65.0 5.2 108 40-149 43-152 (233)
56 KOG2120 SCF ubiquitin ligase, 97.9 7.7E-07 1.7E-11 75.5 -3.1 139 7-147 210-373 (419)
57 KOG2982 Uncharacterized conser 97.8 2.7E-05 5.9E-10 66.3 4.5 108 42-150 48-159 (418)
58 KOG3665 ZYG-1-like serine/thre 97.7 1.9E-05 4E-10 77.0 3.3 131 7-152 122-265 (699)
59 KOG3665 ZYG-1-like serine/thre 97.7 1.8E-05 3.8E-10 77.2 2.2 129 39-170 122-258 (699)
60 KOG2739 Leucine-rich acidic nu 97.7 3.2E-05 6.9E-10 64.7 3.2 94 55-151 35-130 (260)
61 PRK15386 type III secretion pr 97.5 0.00052 1.1E-08 62.2 8.4 32 205-239 156-187 (426)
62 KOG2739 Leucine-rich acidic nu 97.3 0.00015 3.2E-09 60.8 2.6 100 42-145 46-151 (260)
63 PF13306 LRR_5: Leucine rich r 97.2 0.0013 2.9E-08 49.9 7.3 101 39-146 12-112 (129)
64 PF13306 LRR_5: Leucine rich r 97.0 0.0014 3.1E-08 49.8 5.3 103 5-120 10-112 (129)
65 KOG2123 Uncharacterized conser 97.0 1.8E-05 4E-10 66.7 -5.8 84 64-152 20-103 (388)
66 KOG2123 Uncharacterized conser 96.6 0.00017 3.6E-09 61.0 -3.2 63 86-154 18-80 (388)
67 PF00560 LRR_1: Leucine Rich R 96.5 0.0014 3E-08 33.1 1.1 22 206-228 1-22 (22)
68 KOG4308 LRR-containing protein 96.3 1.5E-05 3.3E-10 74.3 -12.0 38 205-242 262-303 (478)
69 PF00560 LRR_1: Leucine Rich R 96.3 0.0018 3.9E-08 32.7 0.9 19 41-60 2-20 (22)
70 PF13504 LRR_7: Leucine rich r 95.1 0.012 2.6E-07 27.5 1.2 14 8-21 2-15 (17)
71 KOG0473 Leucine-rich repeat pr 94.6 0.00053 1.1E-08 56.6 -7.2 80 41-123 44-123 (326)
72 smart00369 LRR_TYP Leucine-ric 93.0 0.097 2.1E-06 27.3 2.1 14 88-101 3-16 (26)
73 smart00370 LRR Leucine-rich re 93.0 0.097 2.1E-06 27.3 2.1 14 88-101 3-16 (26)
74 KOG0473 Leucine-rich repeat pr 92.9 0.0013 2.9E-08 54.3 -7.6 74 26-101 40-125 (326)
75 KOG4308 LRR-containing protein 92.9 0.00072 1.6E-08 63.3 -10.6 37 204-240 289-329 (478)
76 smart00370 LRR Leucine-rich re 92.5 0.11 2.3E-06 27.2 1.9 16 63-78 2-17 (26)
77 smart00369 LRR_TYP Leucine-ric 92.5 0.11 2.3E-06 27.2 1.9 16 63-78 2-17 (26)
78 PF13516 LRR_6: Leucine Rich r 92.0 0.03 6.6E-07 28.7 -0.7 21 205-225 2-22 (24)
79 KOG3864 Uncharacterized conser 88.3 0.057 1.2E-06 43.9 -2.2 81 64-146 102-185 (221)
80 smart00365 LRR_SD22 Leucine-ri 88.3 0.43 9.4E-06 25.0 1.8 18 229-246 2-19 (26)
81 KOG4242 Predicted myosin-I-bin 87.8 4.1 9E-05 37.8 8.8 41 207-247 415-458 (553)
82 KOG1947 Leucine rich repeat pr 86.0 0.16 3.5E-06 47.8 -1.1 91 58-149 209-307 (482)
83 KOG1947 Leucine rich repeat pr 85.7 0.36 7.8E-06 45.4 1.2 85 39-123 214-307 (482)
84 smart00364 LRR_BAC Leucine-ric 85.5 0.57 1.2E-05 24.5 1.3 17 230-246 3-19 (26)
85 KOG4341 F-box protein containi 85.0 0.33 7.3E-06 43.9 0.5 109 39-149 320-438 (483)
86 smart00368 LRR_RI Leucine rich 82.4 1.1 2.4E-05 23.8 1.8 12 41-52 4-15 (28)
87 KOG3864 Uncharacterized conser 80.8 0.56 1.2E-05 38.3 0.2 89 79-168 93-182 (221)
88 TIGR00864 PCC polycystin catio 79.1 1.3 2.9E-05 49.5 2.4 37 211-247 1-37 (2740)
89 PF04478 Mid2: Mid2 like cell 73.4 0.86 1.9E-05 35.2 -0.6 10 308-317 101-110 (154)
90 KOG4341 F-box protein containi 71.6 2.3 4.9E-05 38.8 1.6 119 5-123 292-438 (483)
91 KOG3763 mRNA export factor TAP 66.5 4.9 0.00011 38.0 2.6 37 204-242 243-283 (585)
92 KOG3763 mRNA export factor TAP 58.0 5.5 0.00012 37.7 1.4 66 5-78 216-285 (585)
93 PF08693 SKG6: Transmembrane a 58.0 2.9 6.3E-05 24.4 -0.3 8 281-288 12-19 (40)
94 smart00367 LRR_CC Leucine-rich 47.3 13 0.00028 19.0 1.2 11 7-17 2-12 (26)
95 TIGR00864 PCC polycystin catio 44.2 16 0.00035 41.6 2.4 33 69-101 1-33 (2740)
96 PF02208 Sorb: Sorbin homologo 32.8 25 0.00055 21.0 1.0 15 304-318 24-38 (47)
97 smart00459 Sorb Sorbin homolog 32.2 26 0.00057 21.4 1.0 17 304-320 27-43 (50)
98 PF08374 Protocadherin: Protoc 26.0 13 0.00029 30.6 -1.3 17 281-297 38-54 (221)
99 PF13908 Shisa: Wnt and FGF in 24.9 28 0.0006 28.1 0.3 7 252-258 51-57 (179)
100 KOG4242 Predicted myosin-I-bin 24.1 67 0.0014 30.2 2.6 93 7-99 165-280 (553)
101 PF02064 MAS20: MAS20 protein 22.9 28 0.0006 26.1 0.0 14 288-301 3-16 (121)
102 PF02404 SCF: Stem cell factor 22.6 29 0.00062 29.5 0.0 27 276-302 212-238 (273)
103 PF01299 Lamp: Lysosome-associ 21.5 3.6 7.7E-05 36.5 -5.9 20 290-309 284-303 (306)
104 PF02480 Herpes_gE: Alphaherpe 20.2 34 0.00074 32.0 0.0 9 302-310 378-386 (439)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.93 E-value=8.5e-26 Score=229.62 Aligned_cols=235 Identities=29% Similarity=0.349 Sum_probs=143.2
Q ss_pred CCCcccEEEcCCCCCCCCCC----CCCCCCCeEECCCC-----------CCCCEEeCCCCcCccccCcCccCCCCccEEe
Q 019924 5 GIATLYYLDLSNNFLTNIEY----FPPTNMTQLNFDSN-----------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLN 69 (334)
Q Consensus 5 ~l~~L~~L~Ls~n~l~~~~~----~~~~~L~~L~l~~n-----------~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 69 (334)
.+++|++|+|++|++++..| ..+++|++|++++| ++|++|++++|.+++.+|..++.+++|++|+
T Consensus 91 ~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~ 170 (968)
T PLN00113 91 RLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLD 170 (968)
T ss_pred CCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEE
Confidence 46777788888887775444 25677777777776 4677777777777777777777777777777
Q ss_pred CCCCccccCCCccccCCCCCCEEEccCCcCCcCCChhhhcCCCCCEEEeecccCcccCCCCCCCCCCCCccEEEecCCcc
Q 019924 70 LNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEF 149 (334)
Q Consensus 70 L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l 149 (334)
+++|.+++.+|..+.++++|++|++++|.+.+..|..++.+++|++|++++|++++.+|..+ ..+++|+.|++++|.+
T Consensus 171 L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l--~~l~~L~~L~L~~n~l 248 (968)
T PLN00113 171 LGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEI--GGLTSLNHLDLVYNNL 248 (968)
T ss_pred CccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhH--hcCCCCCEEECcCcee
Confidence 77777776677777777777777777777776667777777777777777777766666554 5666667777766666
Q ss_pred ccccchhhHHhHHhhhhcCCcccccc-----cccCCCCCCc---------------------eeeEE---EEEeccchhh
Q 019924 150 TGVLLTGYLDNFKAMMHGNNISVEVD-----YMTPLNSSNY---------------------YESII---LTIKGIDIKM 200 (334)
Q Consensus 150 ~~~~~~~~~~~l~~L~~~~~~~~~~~-----~~~~~~~~~~---------------------l~~~~---~~~~~~~~~~ 200 (334)
.+..|.. +.++++|+.++...+.+. .+........ ++.+. +.+.+..+..
T Consensus 249 ~~~~p~~-l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~ 327 (968)
T PLN00113 249 TGPIPSS-LGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVA 327 (968)
T ss_pred ccccChh-HhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChh
Confidence 6555533 444444444333221111 0001111111 11111 1222222233
Q ss_pred hhhhhheeEEEccCcccccCCchhhhCcCCCCeeeccCCccC
Q 019924 201 ERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLT 242 (334)
Q Consensus 201 ~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 242 (334)
+..+++|+.|++++|.+++.+|..+..+++|+.|++++|+++
T Consensus 328 ~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~ 369 (968)
T PLN00113 328 LTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLT 369 (968)
T ss_pred HhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeE
Confidence 444566666666666666666666666666666666666665
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.93 E-value=1.4e-25 Score=228.09 Aligned_cols=236 Identities=26% Similarity=0.310 Sum_probs=160.8
Q ss_pred CCCcccEEEcCCCCCCCCCC-CCCCCCCeEECCCC-------------CCCCEEeCCCCcCccccCcCccCCCCccEEeC
Q 019924 5 GIATLYYLDLSNNFLTNIEY-FPPTNMTQLNFDSN-------------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNL 70 (334)
Q Consensus 5 ~l~~L~~L~Ls~n~l~~~~~-~~~~~L~~L~l~~n-------------~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 70 (334)
++++|++|++++|.+++..| ..+++|++|++++| ++|++|++++|.+.+.+|..++++++|++|++
T Consensus 116 ~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 195 (968)
T PLN00113 116 TSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTL 195 (968)
T ss_pred cCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeec
Confidence 56788888888888876655 56777888888777 56777777777777777777777777777777
Q ss_pred CCCccccCCCccccCCCCCCEEEccCCcCCcCCChhhhcCCCCCEEEeecccCcccCCCCCCCCCCCCccEEEecCCccc
Q 019924 71 NGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFT 150 (334)
Q Consensus 71 ~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~ 150 (334)
++|++++.+|..+.++++|++|++++|.+.+..|..++.+++|++|++++|.+++.+|..+ ..+++|+.|++++|.+.
T Consensus 196 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l--~~l~~L~~L~L~~n~l~ 273 (968)
T PLN00113 196 ASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSL--GNLKNLQYLFLYQNKLS 273 (968)
T ss_pred cCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhH--hCCCCCCEEECcCCeee
Confidence 7777777777777777777777777777776677777777777777777777766666544 56666666666666666
Q ss_pred cccchhhHHhHHhhhhcCCcccccc--------cccC------------------CCCCCceeeEEEE---Eeccchhhh
Q 019924 151 GVLLTGYLDNFKAMMHGNNISVEVD--------YMTP------------------LNSSNYYESIILT---IKGIDIKME 201 (334)
Q Consensus 151 ~~~~~~~~~~l~~L~~~~~~~~~~~--------~~~~------------------~~~~~~l~~~~~~---~~~~~~~~~ 201 (334)
+..|.. +.++++|..++...+... .+.. ......+..+.+. +.+..+..+
T Consensus 274 ~~~p~~-l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l 352 (968)
T PLN00113 274 GPIPPS-IFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNL 352 (968)
T ss_pred ccCchh-HhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHH
Confidence 555433 334444433322111100 0000 0111122333333 333334455
Q ss_pred hhhhheeEEEccCcccccCCchhhhCcCCCCeeeccCCccCC
Q 019924 202 RILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTG 243 (334)
Q Consensus 202 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 243 (334)
..+++|+.|++++|++++.+|+.+..+++|+.|++++|++++
T Consensus 353 ~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~ 394 (968)
T PLN00113 353 GKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEG 394 (968)
T ss_pred hCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecc
Confidence 567899999999999999999999999999999999999874
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.89 E-value=1.8e-24 Score=194.34 Aligned_cols=236 Identities=25% Similarity=0.274 Sum_probs=148.8
Q ss_pred cCCCcccEEEcCCCCCCCCCC--CCCCCCCeEECCCC-------------CCCCEEeCCCCcCccccCcCccCCCCccEE
Q 019924 4 LGIATLYYLDLSNNFLTNIEY--FPPTNMTQLNFDSN-------------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSL 68 (334)
Q Consensus 4 ~~l~~L~~L~Ls~n~l~~~~~--~~~~~L~~L~l~~n-------------~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 68 (334)
.++++|+.+++.+|.++.++. ....+++.|+|.+| +.|+.||||.|.|+...-.+|..-.++++|
T Consensus 99 ~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L 178 (873)
T KOG4194|consen 99 YNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKL 178 (873)
T ss_pred hcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEE
Confidence 367888888888888887776 45566888888888 678888888888885555667777788888
Q ss_pred eCCCCccccCCCccccCCCCCCEEEccCCcCCcCCChhhhcCCCCCEEEeecccCcccCCCCCCCCCCCCccEEEecCCc
Q 019924 69 NLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNE 148 (334)
Q Consensus 69 ~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~ 148 (334)
+|++|.|+..-.+.|.++.+|..|.|+.|+++...+..|..+++|+.|+|..|+|. +.+...|.++++|+.|.|..|.
T Consensus 179 ~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~ir--ive~ltFqgL~Sl~nlklqrN~ 256 (873)
T KOG4194|consen 179 NLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIR--IVEGLTFQGLPSLQNLKLQRND 256 (873)
T ss_pred eeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhcccccee--eehhhhhcCchhhhhhhhhhcC
Confidence 99888888777778888888888888888888877778888888888888888873 2233344556666666666665
Q ss_pred cccccchhhHHhHHhhhhcCCccc-----ccccccCCCCCCceeeEEEEEeccchhhhhhhhheeEEEccCcccccCCch
Q 019924 149 FTGVLLTGYLDNFKAMMHGNNISV-----EVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPE 223 (334)
Q Consensus 149 l~~~~~~~~~~~l~~L~~~~~~~~-----~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~ 223 (334)
+..... +.|-.+.++..++...+ +...+-++..+..+....+.+..+..+..+..++|++|||++|+|+...+.
T Consensus 257 I~kL~D-G~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~ 335 (873)
T KOG4194|consen 257 ISKLDD-GAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEG 335 (873)
T ss_pred cccccC-cceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChh
Confidence 553322 22333333333332111 112222333333333333444444444444445555555555555544444
Q ss_pred hhhCcCCCCeeeccCCccC
Q 019924 224 VVGKLNLLKGLNISHNNLT 242 (334)
Q Consensus 224 ~l~~l~~L~~L~Ls~N~l~ 242 (334)
.|..+..|+.|+|++|.++
T Consensus 336 sf~~L~~Le~LnLs~Nsi~ 354 (873)
T KOG4194|consen 336 SFRVLSQLEELNLSHNSID 354 (873)
T ss_pred HHHHHHHhhhhcccccchH
Confidence 4444444555555555444
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.87 E-value=2.6e-23 Score=187.02 Aligned_cols=232 Identities=19% Similarity=0.169 Sum_probs=168.7
Q ss_pred CcccEEEcCCCCCCCCCC---CCCCCCCeEECCCC-------------CCCCEEeCCCCcCccccCcCccCCCCccEEeC
Q 019924 7 ATLYYLDLSNNFLTNIEY---FPPTNMTQLNFDSN-------------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNL 70 (334)
Q Consensus 7 ~~L~~L~Ls~n~l~~~~~---~~~~~L~~L~l~~n-------------~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 70 (334)
.++++|+|++|+|+.+.. ..+.+|..|.|+.| +.|+.|+|..|+|.-.---.|.++++|+.|.|
T Consensus 173 ~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlkl 252 (873)
T KOG4194|consen 173 VNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKL 252 (873)
T ss_pred CCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhh
Confidence 468888999998887766 44556777778887 56788888888887433567888888888888
Q ss_pred CCCccccCCCccccCCCCCCEEEccCCcCCcCCChhhhcCCCCCEEEeecccCcccCCCCCCCCCCCCccEEEecCCccc
Q 019924 71 NGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFT 150 (334)
Q Consensus 71 ~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~ 150 (334)
..|.|...-.+.|..+.++++|+|+.|+++..-..|+.++++|+.|++++|.|....++.. ...++|+.|+|++|+++
T Consensus 253 qrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~W--sftqkL~~LdLs~N~i~ 330 (873)
T KOG4194|consen 253 QRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSW--SFTQKLKELDLSSNRIT 330 (873)
T ss_pred hhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchh--hhcccceeEeccccccc
Confidence 8888886677788888889999999998888777888888889999999988876666655 56788888999998888
Q ss_pred cccchhhHHhHHhhhhcCCccccccccc-----CCCCCCceeeEEEE----EeccchhhhhhhhheeEEEccCcccccCC
Q 019924 151 GVLLTGYLDNFKAMMHGNNISVEVDYMT-----PLNSSNYYESIILT----IKGIDIKMERILTIFMTIDLSSNKFQGGI 221 (334)
Q Consensus 151 ~~~~~~~~~~l~~L~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~----~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 221 (334)
...+ +.+..|..|..++...+.+..+. ...++..+....+. +.+ ....+..+++|+.|+|.+|++....
T Consensus 331 ~l~~-~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IED-aa~~f~gl~~LrkL~l~gNqlk~I~ 408 (873)
T KOG4194|consen 331 RLDE-GSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIED-AAVAFNGLPSLRKLRLTGNQLKSIP 408 (873)
T ss_pred cCCh-hHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEec-chhhhccchhhhheeecCceeeecc
Confidence 6554 44677777766666444444332 22222222222221 222 2344556888888888888888555
Q ss_pred chhhhCcCCCCeeeccCCccC
Q 019924 222 PEVVGKLNLLKGLNISHNNLT 242 (334)
Q Consensus 222 p~~l~~l~~L~~L~Ls~N~l~ 242 (334)
-.+|..++.|+.|||.+|.|.
T Consensus 409 krAfsgl~~LE~LdL~~Naia 429 (873)
T KOG4194|consen 409 KRAFSGLEALEHLDLGDNAIA 429 (873)
T ss_pred hhhhccCcccceecCCCCcce
Confidence 677888888888888888876
No 5
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.80 E-value=2e-21 Score=176.37 Aligned_cols=180 Identities=26% Similarity=0.305 Sum_probs=82.0
Q ss_pred CCCCEEeCCCCcCc-cccCcCccCCCCccEEeCCCCccccCCCccccCCCCCCEEEccCCcCCcCCChhhhcCCCCCEEE
Q 019924 39 LTHKVLDMRMNNFN-GKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLI 117 (334)
Q Consensus 39 ~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ 117 (334)
++|+.+++.+|++. .-+|..+..+..|+.||||+|+++ +.|..+..-+++-.|+||+|+|..++...|-+++.|-.||
T Consensus 78 p~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLD 156 (1255)
T KOG0444|consen 78 PRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLD 156 (1255)
T ss_pred hhhHHHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhc
Confidence 34444444444443 123444444555555555555554 4444444445555555555555443333334455555555
Q ss_pred eecccCcccCCCCCCCCCCCCccEEEecCCccccccchhhHHhHHhhhhcCCcccccccccCCCCCCceeeEEEEEeccc
Q 019924 118 LRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGID 197 (334)
Q Consensus 118 L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 197 (334)
|++|++. ..|..+ ..+..|++|+|++|.+....... +..+++|..++..+.. -....++
T Consensus 157 LS~NrLe-~LPPQ~--RRL~~LqtL~Ls~NPL~hfQLrQ-LPsmtsL~vLhms~Tq-----------------RTl~N~P 215 (1255)
T KOG0444|consen 157 LSNNRLE-MLPPQI--RRLSMLQTLKLSNNPLNHFQLRQ-LPSMTSLSVLHMSNTQ-----------------RTLDNIP 215 (1255)
T ss_pred cccchhh-hcCHHH--HHHhhhhhhhcCCChhhHHHHhc-Cccchhhhhhhccccc-----------------chhhcCC
Confidence 5555543 222222 34444555555555443211000 1112222222221110 0011111
Q ss_pred hhhhhhhhheeEEEccCcccccCCchhhhCcCCCCeeeccCCccC
Q 019924 198 IKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLT 242 (334)
Q Consensus 198 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 242 (334)
.....+.+|..+|+|.|.+. .+|+.+-++++|+.|+||+|+|+
T Consensus 216 -tsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~it 258 (1255)
T KOG0444|consen 216 -TSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKIT 258 (1255)
T ss_pred -CchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCcee
Confidence 12223566666777777766 66666666777777777777666
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.79 E-value=4.5e-21 Score=174.13 Aligned_cols=210 Identities=24% Similarity=0.288 Sum_probs=119.4
Q ss_pred CCcccEEEcCCCCCCCCCC--CCCCCCCeEECCCC--------------CCCCEEeCCCCcCccccCcCccCCCCccEEe
Q 019924 6 IATLYYLDLSNNFLTNIEY--FPPTNMTQLNFDSN--------------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLN 69 (334)
Q Consensus 6 l~~L~~L~Ls~n~l~~~~~--~~~~~L~~L~l~~n--------------~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 69 (334)
+.+|+.|.+++|++..+.. ..++.|+.+.+..| ..|++||||+|+++ +.|..+..-+++-.|+
T Consensus 54 lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLN 132 (1255)
T KOG0444|consen 54 LQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLN 132 (1255)
T ss_pred HhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEE
Confidence 3455555666665554433 44445555555444 45566677777766 6666666666666777
Q ss_pred CCCCccccCCCccccCCCCCCEEEccCCcCCcCCChhhhcCCCCCEEEeecccCcc------------------------
Q 019924 70 LNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWG------------------------ 125 (334)
Q Consensus 70 L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~------------------------ 125 (334)
||+|+|......-|.+++.|-+||||+|++.. +|..+..+..|++|+|++|.+..
T Consensus 133 LS~N~IetIPn~lfinLtDLLfLDLS~NrLe~-LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl 211 (1255)
T KOG0444|consen 133 LSYNNIETIPNSLFINLTDLLFLDLSNNRLEM-LPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTL 211 (1255)
T ss_pred cccCccccCCchHHHhhHhHhhhccccchhhh-cCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchh
Confidence 77777664333445566666667777776665 44455666666666666666521
Q ss_pred -cCCCCCCCCCCCCccEEEecCCccccccchhhHHhHHhhhhcCCcccccccccCCCCCCceeeEEEEEeccchhhhhhh
Q 019924 126 -PIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERIL 204 (334)
Q Consensus 126 -~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l 204 (334)
.+|.++ ..+.+|+.+|+|+|.+... | .++-++.+|..++..++ .+..+.... ...
T Consensus 212 ~N~Ptsl--d~l~NL~dvDlS~N~Lp~v-P-ecly~l~~LrrLNLS~N-------------------~iteL~~~~-~~W 267 (1255)
T KOG0444|consen 212 DNIPTSL--DDLHNLRDVDLSENNLPIV-P-ECLYKLRNLRRLNLSGN-------------------KITELNMTE-GEW 267 (1255)
T ss_pred hcCCCch--hhhhhhhhccccccCCCcc-h-HHHhhhhhhheeccCcC-------------------ceeeeeccH-HHH
Confidence 122222 3444555555555555422 2 23344444444333222 222222211 124
Q ss_pred hheeEEEccCcccccCCchhhhCcCCCCeeeccCCccC
Q 019924 205 TIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLT 242 (334)
Q Consensus 205 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 242 (334)
.+|++|+||.|+++ ..|+++.+++.|+.|.+.+|+++
T Consensus 268 ~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~ 304 (1255)
T KOG0444|consen 268 ENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLT 304 (1255)
T ss_pred hhhhhhccccchhc-cchHHHhhhHHHHHHHhccCccc
Confidence 56777788888887 77777778888888877777775
No 7
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.78 E-value=1.7e-21 Score=168.25 Aligned_cols=227 Identities=22% Similarity=0.288 Sum_probs=140.5
Q ss_pred ccEEEcCCCCCCCCCC--CCCCCCCeEECCCC------------CCCCEEeCCCCcCccccCcCccCCCCccEEeCCCCc
Q 019924 9 LYYLDLSNNFLTNIEY--FPPTNMTQLNFDSN------------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNR 74 (334)
Q Consensus 9 L~~L~Ls~n~l~~~~~--~~~~~L~~L~l~~n------------~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~ 74 (334)
++.+++++|.++...+ ..+..+++|++.+| ..++.++.++|++. .+|..+..+.++..|+.++|.
T Consensus 47 l~~lils~N~l~~l~~dl~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~n~ 125 (565)
T KOG0472|consen 47 LQKLILSHNDLEVLREDLKNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSSNE 125 (565)
T ss_pred hhhhhhccCchhhccHhhhcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhccccc
Confidence 4455556665554443 34445555555555 23455666777766 666666666777777777777
Q ss_pred cccCCCccccCCCCCCEEEccCCcCCcCCChhhhcCCCCCEEEeecccCcccCCCCCCCCCCCCccEEEecCCccccccc
Q 019924 75 LEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLL 154 (334)
Q Consensus 75 l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 154 (334)
+. .+|++++.+-.++.++..+|+++. .|..+..+.+|..+++.+|++....+..+ .++.|++||+.+|.+... |
T Consensus 126 ~~-el~~~i~~~~~l~dl~~~~N~i~s-lp~~~~~~~~l~~l~~~~n~l~~l~~~~i---~m~~L~~ld~~~N~L~tl-P 199 (565)
T KOG0472|consen 126 LK-ELPDSIGRLLDLEDLDATNNQISS-LPEDMVNLSKLSKLDLEGNKLKALPENHI---AMKRLKHLDCNSNLLETL-P 199 (565)
T ss_pred ee-ecCchHHHHhhhhhhhcccccccc-CchHHHHHHHHHHhhccccchhhCCHHHH---HHHHHHhcccchhhhhcC-C
Confidence 66 556666666677777777777665 45556666666666777776654444433 266666666666666533 3
Q ss_pred hhhHHhHHhhhhcCCcccccccccCCCCCCce---eeEEEEEeccchhhhhhhhheeEEEccCcccccCCchhhhCcCCC
Q 019924 155 TGYLDNFKAMMHGNNISVEVDYMTPLNSSNYY---ESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLL 231 (334)
Q Consensus 155 ~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l---~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L 231 (334)
.. ++.+.+|..++...+++..++.......+ ....+.+.-++.+..+.++++..|||.+|+++ +.|+.+..+.+|
T Consensus 200 ~~-lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL 277 (565)
T KOG0472|consen 200 PE-LGGLESLELLYLRRNKIRFLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSL 277 (565)
T ss_pred hh-hcchhhhHHHHhhhcccccCCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccc-cCchHHHHhhhh
Confidence 23 55555555555544444444444333322 22333444455566666778888888888887 788888888888
Q ss_pred CeeeccCCccCCC
Q 019924 232 KGLNISHNNLTGL 244 (334)
Q Consensus 232 ~~L~Ls~N~l~~l 244 (334)
++||+|+|.|+++
T Consensus 278 ~rLDlSNN~is~L 290 (565)
T KOG0472|consen 278 ERLDLSNNDISSL 290 (565)
T ss_pred hhhcccCCccccC
Confidence 8888888888754
No 8
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.74 E-value=2.6e-19 Score=154.87 Aligned_cols=175 Identities=26% Similarity=0.341 Sum_probs=117.1
Q ss_pred CCCEEeCCCCcCccccCcCccCCCC---ccEEeCCCCccccCCCccccCCCCCCEE-EccCCcCCcCCChhhhcCCCCCE
Q 019924 40 THKVLDMRMNNFNGKIPRKFVKSCN---LTSLNLNGNRLEGPLPPSLVNCHHLEVL-NVGNNQINDNFPNWLEILPELQV 115 (334)
Q Consensus 40 ~L~~L~Ls~N~l~~~~p~~~~~l~~---L~~L~L~~n~l~~~~p~~l~~l~~L~~L-~Ls~N~l~~~~~~~l~~l~~L~~ 115 (334)
+.++|+++.-+++ .+|+......+ ....+++.|++. ++|..+..++.+.+. ++++|.+ +.+|..++.+++|..
T Consensus 363 ~tkiL~~s~~qlt-~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~i-sfv~~~l~~l~kLt~ 439 (565)
T KOG0472|consen 363 TTKILDVSDKQLT-LVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKI-SFVPLELSQLQKLTF 439 (565)
T ss_pred hhhhhcccccccc-cCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCcc-ccchHHHHhhhccee
Confidence 3455555555555 33433222222 556666666666 566666555554433 3444444 447888889999999
Q ss_pred EEeecccCcccCCCCCCCCCCCCccEEEecCCccccccchhhHHhHHhhhhcCCcccccccccCCCCCCceeeEEEEEec
Q 019924 116 LILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKG 195 (334)
Q Consensus 116 L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 195 (334)
|+|++|.+. .+|..+ +.+..|+.||+++|++... | .+.-.+..+...-. ...++..
T Consensus 440 L~L~NN~Ln-~LP~e~--~~lv~Lq~LnlS~NrFr~l-P-~~~y~lq~lEtlla-------------------s~nqi~~ 495 (565)
T KOG0472|consen 440 LDLSNNLLN-DLPEEM--GSLVRLQTLNLSFNRFRML-P-ECLYELQTLETLLA-------------------SNNQIGS 495 (565)
T ss_pred eecccchhh-hcchhh--hhhhhhheecccccccccc-h-HHHhhHHHHHHHHh-------------------ccccccc
Confidence 999999874 566665 6788899999999988643 3 22222222222111 1224455
Q ss_pred cchhhhhhhhheeEEEccCcccccCCchhhhCcCCCCeeeccCCccC
Q 019924 196 IDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLT 242 (334)
Q Consensus 196 ~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 242 (334)
++..-...+.+|+.|||.+|.+. .+|..+++|.+|+.|++++|+|.
T Consensus 496 vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 496 VDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred cChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence 56666667999999999999998 89999999999999999999986
No 9
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.73 E-value=2.1e-17 Score=159.39 Aligned_cols=40 Identities=18% Similarity=0.275 Sum_probs=34.6
Q ss_pred hhheeEEEccCcccccCCchhhhCcCCCCeeeccCCccCCC
Q 019924 204 LTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGL 244 (334)
Q Consensus 204 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~l 244 (334)
+..|+.|++++|+|+ .+|..+.++++|+.|+|++|+|++.
T Consensus 421 ~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~ 460 (788)
T PRK15387 421 PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSER 460 (788)
T ss_pred hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCch
Confidence 356788999999998 7899999999999999999999853
No 10
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.73 E-value=1.5e-19 Score=155.90 Aligned_cols=209 Identities=23% Similarity=0.240 Sum_probs=153.9
Q ss_pred cccEEEcCCCCCCCCCCCCCCCCCeEECCCCCCCCEEeCCCCcCccccCcCccCCCCccEEeCCC-CccccCCCccccCC
Q 019924 8 TLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNG-NRLEGPLPPSLVNC 86 (334)
Q Consensus 8 ~L~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~-n~l~~~~p~~l~~l 86 (334)
.-+.++|..|.|+.+++..|+.+..| +.||||+|+|+.+.|++|.++.+|..|-+.+ |+|+....+.|.++
T Consensus 68 ~tveirLdqN~I~~iP~~aF~~l~~L--------RrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL 139 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSIPPGAFKTLHRL--------RRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGL 139 (498)
T ss_pred cceEEEeccCCcccCChhhccchhhh--------ceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhH
Confidence 45678999999999998888888777 8999999999988899999998887776665 88886666778888
Q ss_pred CCCCEEEccCCcCCcCCChhhhcCCCCCEEEeecccCcccCCC-CC----------------------------------
Q 019924 87 HHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGE-NT---------------------------------- 131 (334)
Q Consensus 87 ~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~-~~---------------------------------- 131 (334)
.+|+.|.+.-|++.-...+.|..+++|..|.+..|.+. .++. .+
T Consensus 140 ~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q-~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~i 218 (498)
T KOG4237|consen 140 SSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQ-SICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPI 218 (498)
T ss_pred HHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhh-hhccccccchhccchHhhhcCccccccccchhhhHHhhchh
Confidence 88888888888877766777777777777777766651 1111 00
Q ss_pred --------------------------------------------------CCCCCCCccEEEecCCccccccchhhHHhH
Q 019924 132 --------------------------------------------------TIVPFPSLRIIDLSHNEFTGVLLTGYLDNF 161 (334)
Q Consensus 132 --------------------------------------------------~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l 161 (334)
.|..+++|+.|++++|+++++.+ ++|..+
T Consensus 219 etsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~-~aFe~~ 297 (498)
T KOG4237|consen 219 ETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIED-GAFEGA 297 (498)
T ss_pred hcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhh-hhhcch
Confidence 13345566666666666654433 334444
Q ss_pred HhhhhcCCcccccccccCCCCCCceeeEEEEEeccchhhhhhhhheeEEEccCcccccCCchhhhCcCCCCeeeccCCcc
Q 019924 162 KAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNL 241 (334)
Q Consensus 162 ~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 241 (334)
..+..+. ...+.+..+...++..+..|+.|+|.+|+|+...|.+|..+.+|..|+|-.|++
T Consensus 298 a~l~eL~-------------------L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~ 358 (498)
T KOG4237|consen 298 AELQELY-------------------LTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPF 358 (498)
T ss_pred hhhhhhh-------------------cCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcc
Confidence 4443332 233445556667788899999999999999999999999999999999999999
Q ss_pred CCCC
Q 019924 242 TGLC 245 (334)
Q Consensus 242 ~~l~ 245 (334)
.+-|
T Consensus 359 ~CnC 362 (498)
T KOG4237|consen 359 NCNC 362 (498)
T ss_pred cCcc
Confidence 8655
No 11
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.70 E-value=8e-17 Score=156.09 Aligned_cols=216 Identities=23% Similarity=0.262 Sum_probs=128.1
Q ss_pred CcccEEEcCCCCCCCCCCCCCCCCCeEECCCC----------CCCCEEeCCCCcCccccCcCccCCCCccEEeCCCCccc
Q 019924 7 ATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSN----------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLE 76 (334)
Q Consensus 7 ~~L~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n----------~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~ 76 (334)
.+...|+++++.++.++..-.++++.|++++| .+|++|++++|+++ .+|..+. .+|+.|++++|+++
T Consensus 178 ~~~~~L~L~~~~LtsLP~~Ip~~L~~L~Ls~N~LtsLP~~l~~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~ 254 (754)
T PRK15370 178 NNKTELRLKILGLTTIPACIPEQITTLILDNNELKSLPENLQGNIKTLYANSNQLT-SIPATLP--DTIQEMELSINRIT 254 (754)
T ss_pred cCceEEEeCCCCcCcCCcccccCCcEEEecCCCCCcCChhhccCCCEEECCCCccc-cCChhhh--ccccEEECcCCccC
Confidence 34567777777777766545567777777777 46788888888887 4565443 36788888888877
Q ss_pred cCCCccccCCCCCCEEEccCCcCCcCCChhhhcCCCCCEEEeecccCcccCCCCCCCCCCCCccEEEecCCccccccchh
Q 019924 77 GPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTG 156 (334)
Q Consensus 77 ~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 156 (334)
.+|..+. .+|+.|++++|+++. +|..+. ++|+.|++++|++++ +|..+ .++|+.|++++|.++.. |..
T Consensus 255 -~LP~~l~--s~L~~L~Ls~N~L~~-LP~~l~--~sL~~L~Ls~N~Lt~-LP~~l----p~sL~~L~Ls~N~Lt~L-P~~ 322 (754)
T PRK15370 255 -ELPERLP--SALQSLDLFHNKISC-LPENLP--EELRYLSVYDNSIRT-LPAHL----PSGITHLNVQSNSLTAL-PET 322 (754)
T ss_pred -cCChhHh--CCCCEEECcCCccCc-cccccC--CCCcEEECCCCcccc-Ccccc----hhhHHHHHhcCCccccC-Ccc
Confidence 5666553 468888888888775 455443 478888888887753 33322 24677777777777653 322
Q ss_pred hHHhHHhhhhcCCcccccccccCC--CCCCceeeEEEEEeccchhhhhhhhheeEEEccCcccccCCchhhhCcCCCCee
Q 019924 157 YLDNFKAMMHGNNISVEVDYMTPL--NSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGL 234 (334)
Q Consensus 157 ~~~~l~~L~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L 234 (334)
...+++.|...++ .+..++.. .....+....+.+..++.. ..+.|+.|+|++|+++ .+|..+. ..|+.|
T Consensus 323 l~~sL~~L~Ls~N---~Lt~LP~~l~~sL~~L~Ls~N~L~~LP~~---lp~~L~~LdLs~N~Lt-~LP~~l~--~sL~~L 393 (754)
T PRK15370 323 LPPGLKTLEAGEN---ALTSLPASLPPELQVLDVSKNQITVLPET---LPPTITTLDVSRNALT-NLPENLP--AALQIM 393 (754)
T ss_pred ccccceeccccCC---ccccCChhhcCcccEEECCCCCCCcCChh---hcCCcCEEECCCCcCC-CCCHhHH--HHHHHH
Confidence 2333333322222 11111110 1111111111222222221 2357888888888887 5666554 357788
Q ss_pred eccCCccCCCCC
Q 019924 235 NISHNNLTGLCG 246 (334)
Q Consensus 235 ~Ls~N~l~~l~~ 246 (334)
++++|+|++++.
T Consensus 394 dLs~N~L~~LP~ 405 (754)
T PRK15370 394 QASRNNLVRLPE 405 (754)
T ss_pred hhccCCcccCch
Confidence 888888876543
No 12
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.70 E-value=4.9e-19 Score=136.59 Aligned_cols=104 Identities=32% Similarity=0.482 Sum_probs=57.3
Q ss_pred CEEeCCCCcCccccCcCccCCCCccEEeCCCCccccCCCccccCCCCCCEEEccCCcCCcCCChhhhcCCCCCEEEeecc
Q 019924 42 KVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSN 121 (334)
Q Consensus 42 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N 121 (334)
+.|-||+|+++ .+|..+..+.+|+.|++.+|+|+ .+|.++..+++|+.|+++-|++.. .|..|+.+|.|+.||+.+|
T Consensus 36 TrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~~-lprgfgs~p~levldltyn 112 (264)
T KOG0617|consen 36 TRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLNI-LPRGFGSFPALEVLDLTYN 112 (264)
T ss_pred hhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhhc-CccccCCCchhhhhhcccc
Confidence 44555556555 44555555556666666666655 455555556666666666555543 4555555666666666555
Q ss_pred cCcc-cCCCCCCCCCCCCccEEEecCCccc
Q 019924 122 RFWG-PIGENTTIVPFPSLRIIDLSHNEFT 150 (334)
Q Consensus 122 ~l~~-~~~~~~~~~~l~~L~~L~Ls~N~l~ 150 (334)
.+.. ..|..+ ..++.|+.|++++|.+.
T Consensus 113 nl~e~~lpgnf--f~m~tlralyl~dndfe 140 (264)
T KOG0617|consen 113 NLNENSLPGNF--FYMTTLRALYLGDNDFE 140 (264)
T ss_pred ccccccCCcch--hHHHHHHHHHhcCCCcc
Confidence 5532 233333 44555555556665554
No 13
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.70 E-value=3.5e-17 Score=158.56 Aligned_cols=214 Identities=19% Similarity=0.275 Sum_probs=142.9
Q ss_pred CcccEEEcCCCCCCCCCCCCCCCCCeEECCCC----------CCCCEEeCCCCcCccccCcCccCCCCccEEeCCCCccc
Q 019924 7 ATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSN----------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLE 76 (334)
Q Consensus 7 ~~L~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n----------~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~ 76 (334)
++|+.|++++|.++.++...+.+|+.|++++| ..|+.|++++|++. .+|..+. .+|+.|++++|+++
T Consensus 199 ~~L~~L~Ls~N~LtsLP~~l~~nL~~L~Ls~N~LtsLP~~l~~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~ 275 (754)
T PRK15370 199 EQITTLILDNNELKSLPENLQGNIKTLYANSNQLTSIPATLPDTIQEMELSINRIT-ELPERLP--SALQSLDLFHNKIS 275 (754)
T ss_pred cCCcEEEecCCCCCcCChhhccCCCEEECCCCccccCChhhhccccEEECcCCccC-cCChhHh--CCCCEEECcCCccC
Confidence 46889999999999887766678999999988 47889999999998 6676654 47899999999998
Q ss_pred cCCCccccCCCCCCEEEccCCcCCcCCChhhhcCCCCCEEEeecccCcccCCCCCCCCCCCCccEEEecCCccccccchh
Q 019924 77 GPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTG 156 (334)
Q Consensus 77 ~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 156 (334)
.+|..+. ++|+.|++++|+++. +|..+. ++|+.|++++|+++. +|... .++|+.|++++|.+++. |..
T Consensus 276 -~LP~~l~--~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N~Lt~-LP~~l----~~sL~~L~Ls~N~Lt~L-P~~ 343 (754)
T PRK15370 276 -CLPENLP--EELRYLSVYDNSIRT-LPAHLP--SGITHLNVQSNSLTA-LPETL----PPGLKTLEAGENALTSL-PAS 343 (754)
T ss_pred -ccccccC--CCCcEEECCCCcccc-Ccccch--hhHHHHHhcCCcccc-CCccc----cccceeccccCCccccC-Chh
Confidence 5676654 589999999999887 454332 467778888887753 34322 35677777777777653 333
Q ss_pred hHHhHHhhhhcCCcccccccccC--CCCCCceeeEEEEEeccchhhhhhhhheeEEEccCcccccCCchhh----hCcCC
Q 019924 157 YLDNFKAMMHGNNISVEVDYMTP--LNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVV----GKLNL 230 (334)
Q Consensus 157 ~~~~l~~L~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l----~~l~~ 230 (334)
...++..|...+ +.+..++. ......+....+.+..++... ...|+.|++++|+++ .+|+.+ ..++.
T Consensus 344 l~~sL~~L~Ls~---N~L~~LP~~lp~~L~~LdLs~N~Lt~LP~~l---~~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~ 416 (754)
T PRK15370 344 LPPELQVLDVSK---NQITVLPETLPPTITTLDVSRNALTNLPENL---PAALQIMQASRNNLV-RLPESLPHFRGEGPQ 416 (754)
T ss_pred hcCcccEEECCC---CCCCcCChhhcCCcCEEECCCCcCCCCCHhH---HHHHHHHhhccCCcc-cCchhHHHHhhcCCC
Confidence 333333332222 22221111 011222222223333444333 347899999999998 666554 44588
Q ss_pred CCeeeccCCccC
Q 019924 231 LKGLNISHNNLT 242 (334)
Q Consensus 231 L~~L~Ls~N~l~ 242 (334)
+..|++.+|+++
T Consensus 417 l~~L~L~~Npls 428 (754)
T PRK15370 417 PTRIIVEYNPFS 428 (754)
T ss_pred ccEEEeeCCCcc
Confidence 899999999987
No 14
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.68 E-value=9.4e-16 Score=157.55 Aligned_cols=231 Identities=18% Similarity=0.159 Sum_probs=111.7
Q ss_pred CcccEEEcCCCCCCCCCC--CCCCCCCeEECCCC------------CCCCEEeCCCCcCccccCcCccCCCCccEEeCCC
Q 019924 7 ATLYYLDLSNNFLTNIEY--FPPTNMTQLNFDSN------------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNG 72 (334)
Q Consensus 7 ~~L~~L~Ls~n~l~~~~~--~~~~~L~~L~l~~n------------~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~ 72 (334)
.+|+.|++++|.+..... ..+++|+.|+++++ ++|++|++++|.....+|..+..+++|+.|++++
T Consensus 611 ~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~ 690 (1153)
T PLN03210 611 ENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSR 690 (1153)
T ss_pred cCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCC
Confidence 445555555555544322 33445555555443 3455555555443335555555555555555555
Q ss_pred CccccCCCccccCCCCCCEEEccCCcCCcCCChhhhcCCCCCEEEeecccCcccCCCCCCC-------------------
Q 019924 73 NRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTI------------------- 133 (334)
Q Consensus 73 n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~------------------- 133 (334)
|.....+|..+ ++++|+.|++++|.....+|.. .++|++|++++|.+. .+|....+
T Consensus 691 c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~~l~~L~~L~l~~~~~~~l~~~ 765 (1153)
T PLN03210 691 CENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSNLRLENLDELILCEMKSEKLWER 765 (1153)
T ss_pred CCCcCccCCcC-CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccc-cccccccccccccccccccchhhcccc
Confidence 43222444433 4455555555554333323321 234555555555542 22221100
Q ss_pred ---------CCCCCccEEEecCCccccccchhhHHhHHhhhhcCCccc-ccccccCCCCCCceeeEEEEEeccchhhhhh
Q 019924 134 ---------VPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISV-EVDYMTPLNSSNYYESIILTIKGIDIKMERI 203 (334)
Q Consensus 134 ---------~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 203 (334)
...++|+.|++++|...+.+|.. ++++++|..++.... ....++.......+..+.+.....-...+..
T Consensus 766 ~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~s-i~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~~ 844 (1153)
T PLN03210 766 VQPLTPLMTMLSPSLTRLFLSDIPSLVELPSS-IQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPDI 844 (1153)
T ss_pred ccccchhhhhccccchheeCCCCCCccccChh-hhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCcccccccc
Confidence 11235666666666555445543 455555555444221 1111211111112222222111111122223
Q ss_pred hhheeEEEccCcccccCCchhhhCcCCCCeeeccC-CccCCC
Q 019924 204 LTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISH-NNLTGL 244 (334)
Q Consensus 204 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~-N~l~~l 244 (334)
.++|+.|+|++|.++ .+|.++..+++|+.|++++ |+++.+
T Consensus 845 ~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l 885 (1153)
T PLN03210 845 STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRV 885 (1153)
T ss_pred ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCcc
Confidence 467888999999887 7888888899999999887 455543
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.66 E-value=7.4e-16 Score=148.81 Aligned_cols=211 Identities=20% Similarity=0.241 Sum_probs=103.6
Q ss_pred cccEEEcCCCCCCCCCCCCCCCCCeEECCCC---------CCCCEEeCCCCcCccccCcCccCCCCccEEeCCCCccccC
Q 019924 8 TLYYLDLSNNFLTNIEYFPPTNMTQLNFDSN---------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGP 78 (334)
Q Consensus 8 ~L~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n---------~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ 78 (334)
.-..||+++|.++.+++.-..+|+.|++.+| ++|++|++++|+|+ .+|.. .++|+.|++++|.++ .
T Consensus 202 ~~~~LdLs~~~LtsLP~~l~~~L~~L~L~~N~Lt~LP~lp~~Lk~LdLs~N~Lt-sLP~l---p~sL~~L~Ls~N~L~-~ 276 (788)
T PRK15387 202 GNAVLNVGESGLTTLPDCLPAHITTLVIPDNNLTSLPALPPELRTLEVSGNQLT-SLPVL---PPGLLELSIFSNPLT-H 276 (788)
T ss_pred CCcEEEcCCCCCCcCCcchhcCCCEEEccCCcCCCCCCCCCCCcEEEecCCccC-cccCc---ccccceeeccCCchh-h
Confidence 3456677777776665544456666666666 45666777777666 33432 234555555555554 2
Q ss_pred CCcccc-----------------CCCCCCEEEccCCcCCcCCChhhhcCCCCCEEEeecccCcccCCCCCCCCCCCCccE
Q 019924 79 LPPSLV-----------------NCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRI 141 (334)
Q Consensus 79 ~p~~l~-----------------~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~ 141 (334)
+|..+. ..++|+.|++++|++++ +|.. ..+|+.|++++|++++ +|. ...+|+.
T Consensus 277 Lp~lp~~L~~L~Ls~N~Lt~LP~~p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~L~~-LP~-----lp~~Lq~ 346 (788)
T PRK15387 277 LPALPSGLCKLWIFGNQLTSLPVLPPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQLTS-LPT-----LPSGLQE 346 (788)
T ss_pred hhhchhhcCEEECcCCccccccccccccceeECCCCcccc-CCCC---cccccccccccCcccc-ccc-----cccccce
Confidence 332111 12344455555554444 2221 1234444444444432 221 1136788
Q ss_pred EEecCCccccccchhhHHhHHhhhhcCCcccccccccCCCCCCceeeEEEEEeccchhhhhhhhheeEEEccCcccccCC
Q 019924 142 IDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGI 221 (334)
Q Consensus 142 L~Ls~N~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 221 (334)
|++++|++++..+ ...++..|...++ .+..++... ..+..+.+..+.+.. .+...++|+.|++++|+++ .+
T Consensus 347 LdLS~N~Ls~LP~--lp~~L~~L~Ls~N---~L~~LP~l~--~~L~~LdLs~N~Lt~-LP~l~s~L~~LdLS~N~Ls-sI 417 (788)
T PRK15387 347 LSVSDNQLASLPT--LPSELYKLWAYNN---RLTSLPALP--SGLKELIVSGNRLTS-LPVLPSELKELMVSGNRLT-SL 417 (788)
T ss_pred EecCCCccCCCCC--CCcccceehhhcc---ccccCcccc--cccceEEecCCcccC-CCCcccCCCEEEccCCcCC-CC
Confidence 8888888875432 1333333332222 111121111 112222222222221 1112356777888888877 45
Q ss_pred chhhhCcCCCCeeeccCCccCCCC
Q 019924 222 PEVVGKLNLLKGLNISHNNLTGLC 245 (334)
Q Consensus 222 p~~l~~l~~L~~L~Ls~N~l~~l~ 245 (334)
|... .+|+.|++++|+|+.++
T Consensus 418 P~l~---~~L~~L~Ls~NqLt~LP 438 (788)
T PRK15387 418 PMLP---SGLLSLSVYRNQLTRLP 438 (788)
T ss_pred Ccch---hhhhhhhhccCcccccC
Confidence 6432 35677888888877553
No 16
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.65 E-value=2.4e-18 Score=132.81 Aligned_cols=132 Identities=26% Similarity=0.375 Sum_probs=73.1
Q ss_pred CCCcccEEEcCCCCCCCCCCCCCCCCCeEECCCCCCCCEEeCCCCcCccccCcCccCCCCccEEeCCCCccccCCCcccc
Q 019924 5 GIATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLV 84 (334)
Q Consensus 5 ~l~~L~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~ 84 (334)
++++++.|.||+|+++.++|. ...|. +|+.|++++|+++ .+|.+++.+++|+.|+++-|++. .+|.+|+
T Consensus 31 ~~s~ITrLtLSHNKl~~vppn-ia~l~--------nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfg 99 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLTVVPPN-IAELK--------NLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFG 99 (264)
T ss_pred chhhhhhhhcccCceeecCCc-HHHhh--------hhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccC
Confidence 345555556666666554441 11121 2255566666665 55666666666666666666665 5566666
Q ss_pred CCCCCCEEEccCCcCC-cCCChhhhcCCCCCEEEeecccCcccCCCCCCCCCCCCccEEEecCCccc
Q 019924 85 NCHHLEVLNVGNNQIN-DNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFT 150 (334)
Q Consensus 85 ~l~~L~~L~Ls~N~l~-~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~ 150 (334)
.++.|+.||+.+|.+. ...|..|..++.|+.|+++.|.|. .+|... +++++|+.|.+.+|.+-
T Consensus 100 s~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dv--g~lt~lqil~lrdndll 163 (264)
T KOG0617|consen 100 SFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDV--GKLTNLQILSLRDNDLL 163 (264)
T ss_pred CCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhh--hhhcceeEEeeccCchh
Confidence 6666666666666553 234555555666666666666652 344433 55666666666666554
No 17
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.63 E-value=6.4e-17 Score=153.03 Aligned_cols=195 Identities=21% Similarity=0.207 Sum_probs=111.3
Q ss_pred CCCEEeCCCCcCccccCcCccCCCCccEEeCCCCccccCCCccccCCCCCCEEEccCCcCCcCCChhhh-----------
Q 019924 40 THKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLE----------- 108 (334)
Q Consensus 40 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~----------- 108 (334)
+|+.++..+|+++ .+|..+...++|+.|.+.+|.+. .+|+...++++|++|+|..|++...++..+.
T Consensus 265 nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~ 342 (1081)
T KOG0618|consen 265 NLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNV 342 (1081)
T ss_pred cceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhh
Confidence 3333344444332 33333333333444444444443 3555566677777777777777653222111
Q ss_pred --------------cCCCCCEEEeecccCcccCCCCCCCCCCCCccEEEecCCccccccchhhHHhHHhhhhcCCccccc
Q 019924 109 --------------ILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEV 174 (334)
Q Consensus 109 --------------~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~~~~~~~~~ 174 (334)
.++.|+.|++.+|.++...-..+ .++..|+.|+|++|++.. .|.+.+.++..|+.++...+..
T Consensus 343 s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l--~~~~hLKVLhLsyNrL~~-fpas~~~kle~LeeL~LSGNkL 419 (1081)
T KOG0618|consen 343 SSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVL--VNFKHLKVLHLSYNRLNS-FPASKLRKLEELEELNLSGNKL 419 (1081)
T ss_pred hhccccccccccchhhHHHHHHHHhcCcccccchhhh--ccccceeeeeeccccccc-CCHHHHhchHHhHHHhcccchh
Confidence 12235566666666655444433 677889999999998874 4556688888888777755544
Q ss_pred ccccC----CCCCCceeeEEEEEeccchhhhhhhhheeEEEccCcccccCCchhhhCcCCCCeeeccCCcc
Q 019924 175 DYMTP----LNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNL 241 (334)
Q Consensus 175 ~~~~~----~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 241 (334)
..++. ......+....+.+...+ -+..++.|+.+|+|.|+++...-..-...++|++||+++|.-
T Consensus 420 ~~Lp~tva~~~~L~tL~ahsN~l~~fP--e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 420 TTLPDTVANLGRLHTLRAHSNQLLSFP--ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTR 488 (1081)
T ss_pred hhhhHHHHhhhhhHHHhhcCCceeech--hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCcc
Confidence 44321 112222222333333333 334478899999999999854322222338999999999973
No 18
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.59 E-value=1.7e-14 Score=148.28 Aligned_cols=141 Identities=18% Similarity=0.220 Sum_probs=91.3
Q ss_pred CCCcccEEEcCCCCCCC------CCC----CCCCCCCeEECCCC-----------CCCCEEeCCCCcCccccCcCccCCC
Q 019924 5 GIATLYYLDLSNNFLTN------IEY----FPPTNMTQLNFDSN-----------LTHKVLDMRMNNFNGKIPRKFVKSC 63 (334)
Q Consensus 5 ~l~~L~~L~Ls~n~l~~------~~~----~~~~~L~~L~l~~n-----------~~L~~L~Ls~N~l~~~~p~~~~~l~ 63 (334)
+|++|+.|.+.++.... ..| ....+|+.|.+.++ .+|++|++++|++. .++..+..++
T Consensus 556 ~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~~s~l~-~L~~~~~~l~ 634 (1153)
T PLN03210 556 GMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNFRPENLVKLQMQGSKLE-KLWDGVHSLT 634 (1153)
T ss_pred cCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcCCccCCcEEECcCcccc-ccccccccCC
Confidence 56777777776554221 111 12345666766665 46777888887776 5666677777
Q ss_pred CccEEeCCCCccccCCCccccCCCCCCEEEccCCcCCcCCChhhhcCCCCCEEEeecccCcccCCCCCCCCCCCCccEEE
Q 019924 64 NLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIID 143 (334)
Q Consensus 64 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ 143 (334)
+|+.|+++++.....+|. +..+++|++|++++|.....+|..++.+++|+.|++++|...+.+|... .+++|+.|+
T Consensus 635 ~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i---~l~sL~~L~ 710 (1153)
T PLN03210 635 GLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI---NLKSLYRLN 710 (1153)
T ss_pred CCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC---CCCCCCEEe
Confidence 888888877654335553 6677778888887776555577777777778888887765444555432 466677777
Q ss_pred ecCCccc
Q 019924 144 LSHNEFT 150 (334)
Q Consensus 144 Ls~N~l~ 150 (334)
+++|...
T Consensus 711 Lsgc~~L 717 (1153)
T PLN03210 711 LSGCSRL 717 (1153)
T ss_pred CCCCCCc
Confidence 7766543
No 19
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.59 E-value=8.8e-16 Score=137.00 Aligned_cols=186 Identities=20% Similarity=0.192 Sum_probs=99.9
Q ss_pred CCCCEEeCCCCcCccccCcCccCCCC---ccEEeCCCCcccc----CCCccccCC-CCCCEEEccCCcCCcC----CChh
Q 019924 39 LTHKVLDMRMNNFNGKIPRKFVKSCN---LTSLNLNGNRLEG----PLPPSLVNC-HHLEVLNVGNNQINDN----FPNW 106 (334)
Q Consensus 39 ~~L~~L~Ls~N~l~~~~p~~~~~l~~---L~~L~L~~n~l~~----~~p~~l~~l-~~L~~L~Ls~N~l~~~----~~~~ 106 (334)
++|+.|++++|.+.+..+..+..+.+ |++|++++|++++ .+...+..+ ++|+.|++++|.+++. .+..
T Consensus 81 ~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~ 160 (319)
T cd00116 81 CGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKA 160 (319)
T ss_pred CceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHH
Confidence 46677777777776545555544444 7777777777652 123344455 6777777777777632 2334
Q ss_pred hhcCCCCCEEEeecccCcccCCCCC--CCCCCCCccEEEecCCccccccchhhHH---hHHhhhhcCCcccccccccCCC
Q 019924 107 LEILPELQVLILRSNRFWGPIGENT--TIVPFPSLRIIDLSHNEFTGVLLTGYLD---NFKAMMHGNNISVEVDYMTPLN 181 (334)
Q Consensus 107 l~~l~~L~~L~L~~N~l~~~~~~~~--~~~~l~~L~~L~Ls~N~l~~~~~~~~~~---~l~~L~~~~~~~~~~~~~~~~~ 181 (334)
+..+++|++|++++|.+++.....+ .+..+++|+.|++++|.+.+........ .+++|..++...
T Consensus 161 ~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~---------- 230 (319)
T cd00116 161 LRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGD---------- 230 (319)
T ss_pred HHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCC----------
Confidence 4556677777777777653211100 1134457777777777765432221111 111122211110
Q ss_pred CCCceeeEEEEEeccch-hhhhh----hhheeEEEccCccccc----CCchhhhCcCCCCeeeccCCccCC
Q 019924 182 SSNYYESIILTIKGIDI-KMERI----LTIFMTIDLSSNKFQG----GIPEVVGKLNLLKGLNISHNNLTG 243 (334)
Q Consensus 182 ~~~~l~~~~~~~~~~~~-~~~~~----l~~L~~L~Ls~N~l~~----~~p~~l~~l~~L~~L~Ls~N~l~~ 243 (334)
+.+.+... ..... .+.|+.|++++|.+++ .++..+..+++|+++++++|+++.
T Consensus 231 ---------n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~ 292 (319)
T cd00116 231 ---------NNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGE 292 (319)
T ss_pred ---------CcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcH
Confidence 00111000 01111 2578888888888862 234455666788888888888764
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.57 E-value=6.5e-16 Score=137.85 Aligned_cols=219 Identities=23% Similarity=0.266 Sum_probs=144.1
Q ss_pred CCCcccEEEcCCCCCCCCCC---------CCCCCCCeEECCCC-------------CC---CCEEeCCCCcCcc----cc
Q 019924 5 GIATLYYLDLSNNFLTNIEY---------FPPTNMTQLNFDSN-------------LT---HKVLDMRMNNFNG----KI 55 (334)
Q Consensus 5 ~l~~L~~L~Ls~n~l~~~~~---------~~~~~L~~L~l~~n-------------~~---L~~L~Ls~N~l~~----~~ 55 (334)
..++++.|+++++.+.+... ..+++|+.|++++| .. |++|++++|++++ .+
T Consensus 49 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l 128 (319)
T cd00116 49 PQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLL 128 (319)
T ss_pred hCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHH
Confidence 34668888888887763111 34668888888887 23 8999999999873 33
Q ss_pred CcCccCC-CCccEEeCCCCccccC----CCccccCCCCCCEEEccCCcCCcC----CChhhhcCCCCCEEEeecccCccc
Q 019924 56 PRKFVKS-CNLTSLNLNGNRLEGP----LPPSLVNCHHLEVLNVGNNQINDN----FPNWLEILPELQVLILRSNRFWGP 126 (334)
Q Consensus 56 p~~~~~l-~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~----~~~~l~~l~~L~~L~L~~N~l~~~ 126 (334)
...+..+ ++|+.|++++|.+++. ++..+..+.+|++|++++|.+++. ++..+..+++|++|++++|.+++.
T Consensus 129 ~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~ 208 (319)
T cd00116 129 AKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDE 208 (319)
T ss_pred HHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChH
Confidence 3455666 8999999999998842 344567778999999999998742 233455667999999999988633
Q ss_pred CCCCC--CCCCCCCccEEEecCCccccccchhhHHhHHhhhhcCCcccccccccCCCCCCceeeEEEEEeccc-------
Q 019924 127 IGENT--TIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGID------- 197 (334)
Q Consensus 127 ~~~~~--~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~------- 197 (334)
....+ .+..+++|+.|++++|.+++.........+.. . ...+..+.+..+.+.
T Consensus 209 ~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~----~--------------~~~L~~L~l~~n~i~~~~~~~l 270 (319)
T cd00116 209 GASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLS----P--------------NISLLTLSLSCNDITDDGAKDL 270 (319)
T ss_pred HHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhc----c--------------CCCceEEEccCCCCCcHHHHHH
Confidence 22111 23567899999999999876433222222210 0 001111222222221
Q ss_pred hhhhhhhhheeEEEccCcccccC----CchhhhCc-CCCCeeeccCCcc
Q 019924 198 IKMERILTIFMTIDLSSNKFQGG----IPEVVGKL-NLLKGLNISHNNL 241 (334)
Q Consensus 198 ~~~~~~l~~L~~L~Ls~N~l~~~----~p~~l~~l-~~L~~L~Ls~N~l 241 (334)
......++.|+.+++++|.++.. ....+... +.|+.+++.+|++
T Consensus 271 ~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 271 AEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred HHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence 11223357899999999999955 44445555 7899999999875
No 21
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.57 E-value=3.2e-16 Score=148.38 Aligned_cols=139 Identities=24% Similarity=0.269 Sum_probs=85.2
Q ss_pred cccE-EEcCCCCCCCCCCCCCCCCCeEECCCC---------CCCCEEeCCCCcCccccCcCccCCCCccEEeCCCCcccc
Q 019924 8 TLYY-LDLSNNFLTNIEYFPPTNMTQLNFDSN---------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEG 77 (334)
Q Consensus 8 ~L~~-L~Ls~n~l~~~~~~~~~~L~~L~l~~n---------~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~ 77 (334)
.++. |||.+|.+.......+.+|+.+....| ++++.|+.++|.++...+. ..-.+|+++++++|+++
T Consensus 178 ~l~~~ldLr~N~~~~~dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~--p~p~nl~~~dis~n~l~- 254 (1081)
T KOG0618|consen 178 NLTHQLDLRYNEMEVLDLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVH--PVPLNLQYLDISHNNLS- 254 (1081)
T ss_pred hhheeeecccchhhhhhhhhccchhhhhhhhcccceEEecCcchheeeeccCcceeeccc--cccccceeeecchhhhh-
Confidence 3444 788888777333345555555555444 5666666667766622221 12246777777777776
Q ss_pred CCCccccCCCCCCEEEccCCcCCcCCChhhhcCCCCCEEEeecccCcccCCCCCCCCCCCCccEEEecCCcccccc
Q 019924 78 PLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVL 153 (334)
Q Consensus 78 ~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 153 (334)
.+|+.+..+.+|+.++..+|.++. .|..+...++|+.|....|.+. .+|... ..+++|++|||..|++...+
T Consensus 255 ~lp~wi~~~~nle~l~~n~N~l~~-lp~ri~~~~~L~~l~~~~nel~-yip~~l--e~~~sL~tLdL~~N~L~~lp 326 (1081)
T KOG0618|consen 255 NLPEWIGACANLEALNANHNRLVA-LPLRISRITSLVSLSAAYNELE-YIPPFL--EGLKSLRTLDLQSNNLPSLP 326 (1081)
T ss_pred cchHHHHhcccceEecccchhHHh-hHHHHhhhhhHHHHHhhhhhhh-hCCCcc--cccceeeeeeehhccccccc
Confidence 455667777777777777777754 5666666677777777777663 334333 45667777777777776443
No 22
>PLN03150 hypothetical protein; Provisional
Probab=99.52 E-value=1e-14 Score=140.52 Aligned_cols=119 Identities=30% Similarity=0.508 Sum_probs=100.6
Q ss_pred CCCEEEccCCcCCcCCChhhhcCCCCCEEEeecccCcccCCCCCCCCCCCCccEEEecCCccccccchhhHHhHHhhhhc
Q 019924 88 HLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHG 167 (334)
Q Consensus 88 ~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~~ 167 (334)
.++.|+|++|.+.+.+|..+..+++|+.|+|++|.+.+.+|..+ ..+++|+.|++++|++++.+|.. +.
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~--~~l~~L~~LdLs~N~lsg~iP~~-l~-------- 487 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSL--GSITSLEVLDLSYNSFNGSIPES-LG-------- 487 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHH--hCCCCCCEEECCCCCCCCCCchH-Hh--------
Confidence 37889999999999999999999999999999999998888876 88999999999999999887754 22
Q ss_pred CCcccccccccCCCCCCceeeEEEEEeccchhhhhhhhheeEEEccCcccccCCchhhhCc-CCCCeeeccCCccCCCCC
Q 019924 168 NNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKL-NLLKGLNISHNNLTGLCG 246 (334)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l-~~L~~L~Ls~N~l~~l~~ 246 (334)
.+++|+.|+|++|+++|.+|..+... .++..+++++|+ ++|+
T Consensus 488 -----------------------------------~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~--~lc~ 530 (623)
T PLN03150 488 -----------------------------------QLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNA--GLCG 530 (623)
T ss_pred -----------------------------------cCCCCCEEECcCCcccccCChHHhhccccCceEEecCCc--cccC
Confidence 26678999999999999999988764 567789999996 5788
Q ss_pred CCccCCCC
Q 019924 247 FPLLESCN 254 (334)
Q Consensus 247 ~~~~~~c~ 254 (334)
.|....|.
T Consensus 531 ~p~l~~C~ 538 (623)
T PLN03150 531 IPGLRACG 538 (623)
T ss_pred CCCCCCCc
Confidence 77666663
No 23
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.52 E-value=5.7e-16 Score=134.05 Aligned_cols=122 Identities=21% Similarity=0.243 Sum_probs=101.2
Q ss_pred CEEeCCCCcCccccCcCccCCCCccEEeCCCCccccCCCccccCCCCCCEEEccC-CcCCcCCChhhhcCCCCCEEEeec
Q 019924 42 KVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGN-NQINDNFPNWLEILPELQVLILRS 120 (334)
Q Consensus 42 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~-N~l~~~~~~~l~~l~~L~~L~L~~ 120 (334)
..++|..|+|+...|.+|..+.+|+.|||++|+|+..-|++|.++.+|..|-+.+ |+|+......|+++.+|+.|.+.-
T Consensus 70 veirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNa 149 (498)
T KOG4237|consen 70 VEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNA 149 (498)
T ss_pred eEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcCh
Confidence 6689999999988899999999999999999999988999999999988777766 999998888999999999999999
Q ss_pred ccCcccCCCCCCCCCCCCccEEEecCCccccccchhhHHhHHhhhh
Q 019924 121 NRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMH 166 (334)
Q Consensus 121 N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~ 166 (334)
|++.-...+.+ ..+++|..|.+.+|.+..+ ....+..+..++.
T Consensus 150 n~i~Cir~~al--~dL~~l~lLslyDn~~q~i-~~~tf~~l~~i~t 192 (498)
T KOG4237|consen 150 NHINCIRQDAL--RDLPSLSLLSLYDNKIQSI-CKGTFQGLAAIKT 192 (498)
T ss_pred hhhcchhHHHH--HHhhhcchhcccchhhhhh-ccccccchhccch
Confidence 99865544444 8899999999999988743 3333455544443
No 24
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.33 E-value=1.1e-13 Score=125.11 Aligned_cols=170 Identities=25% Similarity=0.374 Sum_probs=135.2
Q ss_pred CEEeCCCCcCccccCcCccCCCCccEEeCCCCccccCCCccccCCCCCCEEEccCCcCCcCCChhhhcCCCCCEEEeecc
Q 019924 42 KVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSN 121 (334)
Q Consensus 42 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N 121 (334)
...|++.|++. ++|..++.+..|+.+.|..|.+. .+|..+.++..|.+||++.|++.. .|..+..++ |+.|-+++|
T Consensus 78 ~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS~-lp~~lC~lp-Lkvli~sNN 153 (722)
T KOG0532|consen 78 VFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLSH-LPDGLCDLP-LKVLIVSNN 153 (722)
T ss_pred hhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhhc-CChhhhcCc-ceeEEEecC
Confidence 66899999998 88998888889999999999998 788899999999999999999987 677777666 899999999
Q ss_pred cCcccCCCCCCCCCCCCccEEEecCCccccccchhhHHhHHhhhhcCCcccccccccCCCCCCceeeEEEEEeccchhhh
Q 019924 122 RFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKME 201 (334)
Q Consensus 122 ~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 201 (334)
+++ .+|..+ +....|..||.+.|++....+ -+..+.++..++...+....+ +.+..
T Consensus 154 kl~-~lp~~i--g~~~tl~~ld~s~nei~slps--ql~~l~slr~l~vrRn~l~~l-------------------p~El~ 209 (722)
T KOG0532|consen 154 KLT-SLPEEI--GLLPTLAHLDVSKNEIQSLPS--QLGYLTSLRDLNVRRNHLEDL-------------------PEELC 209 (722)
T ss_pred ccc-cCCccc--ccchhHHHhhhhhhhhhhchH--HhhhHHHHHHHHHhhhhhhhC-------------------CHHHh
Confidence 984 667766 678889999999999875533 256666665555433222221 11111
Q ss_pred hhhhheeEEEccCcccccCCchhhhCcCCCCeeeccCCccC
Q 019924 202 RILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLT 242 (334)
Q Consensus 202 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 242 (334)
.-.|..||+|.|+++ .+|-.|.+|+.|++|-|.+|+++
T Consensus 210 --~LpLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq 247 (722)
T KOG0532|consen 210 --SLPLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ 247 (722)
T ss_pred --CCceeeeecccCcee-ecchhhhhhhhheeeeeccCCCC
Confidence 124789999999998 89999999999999999999998
No 25
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.31 E-value=3.9e-12 Score=101.84 Aligned_cols=107 Identities=27% Similarity=0.401 Sum_probs=42.8
Q ss_pred CCCEEeCCCCcCccccCcCcc-CCCCccEEeCCCCccccCCCccccCCCCCCEEEccCCcCCcCCChhh-hcCCCCCEEE
Q 019924 40 THKVLDMRMNNFNGKIPRKFV-KSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWL-EILPELQVLI 117 (334)
Q Consensus 40 ~L~~L~Ls~N~l~~~~p~~~~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l-~~l~~L~~L~ 117 (334)
.+++|+|++|+|+. + +.++ .+.+|+.|++++|.|+. ++ .+..+++|++|++++|+|+.. +..+ ..+++|++|+
T Consensus 20 ~~~~L~L~~n~I~~-I-e~L~~~l~~L~~L~Ls~N~I~~-l~-~l~~L~~L~~L~L~~N~I~~i-~~~l~~~lp~L~~L~ 94 (175)
T PF14580_consen 20 KLRELNLRGNQIST-I-ENLGATLDKLEVLDLSNNQITK-LE-GLPGLPRLKTLDLSNNRISSI-SEGLDKNLPNLQELY 94 (175)
T ss_dssp ------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS---S--CHHHHHH-TT--EEE
T ss_pred cccccccccccccc-c-cchhhhhcCCCEEECCCCCCcc-cc-CccChhhhhhcccCCCCCCcc-ccchHHhCCcCCEEE
Confidence 34888999999983 3 3454 57889999999999984 43 588899999999999999874 4444 4689999999
Q ss_pred eecccCcccCCCCCCCCCCCCccEEEecCCccccc
Q 019924 118 LRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGV 152 (334)
Q Consensus 118 L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 152 (334)
+++|+|.. +.+...+..+++|+.|++.+|.++..
T Consensus 95 L~~N~I~~-l~~l~~L~~l~~L~~L~L~~NPv~~~ 128 (175)
T PF14580_consen 95 LSNNKISD-LNELEPLSSLPKLRVLSLEGNPVCEK 128 (175)
T ss_dssp -TTS---S-CCCCGGGGG-TT--EEE-TT-GGGGS
T ss_pred CcCCcCCC-hHHhHHHHcCCCcceeeccCCcccch
Confidence 99999854 33333457789999999999998754
No 26
>PLN03150 hypothetical protein; Provisional
Probab=99.30 E-value=5.4e-12 Score=121.76 Aligned_cols=108 Identities=29% Similarity=0.411 Sum_probs=82.5
Q ss_pred CCEEeCCCCcCccccCcCccCCCCccEEeCCCCccccCCCccccCCCCCCEEEccCCcCCcCCChhhhcCCCCCEEEeec
Q 019924 41 HKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRS 120 (334)
Q Consensus 41 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~ 120 (334)
++.|+|++|.+++.+|..++.+++|+.|+|++|++++.+|..+..+++|+.|++++|++++.+|..++.+++|++|+|++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 46778888888888888888888888888888888877887788888888888888888877888888888888888888
Q ss_pred ccCcccCCCCCCCCCCCCccEEEecCCcc
Q 019924 121 NRFWGPIGENTTIVPFPSLRIIDLSHNEF 149 (334)
Q Consensus 121 N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l 149 (334)
|++++.+|..+. ....++..+++.+|..
T Consensus 500 N~l~g~iP~~l~-~~~~~~~~l~~~~N~~ 527 (623)
T PLN03150 500 NSLSGRVPAALG-GRLLHRASFNFTDNAG 527 (623)
T ss_pred CcccccCChHHh-hccccCceEEecCCcc
Confidence 888777776541 1124556677777754
No 27
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.26 E-value=4.6e-12 Score=116.50 Aligned_cols=173 Identities=29% Similarity=0.400 Sum_probs=108.7
Q ss_pred CEEeCCCCcCccccCcCccCCC-CccEEeCCCCccccCCCccccCCCCCCEEEccCCcCCcCCChhhhcCCCCCEEEeec
Q 019924 42 KVLDMRMNNFNGKIPRKFVKSC-NLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRS 120 (334)
Q Consensus 42 ~~L~Ls~N~l~~~~p~~~~~l~-~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~ 120 (334)
+.|++.+|.++ .+|.....+. +|+.|++++|++. .+|..+..+++|+.|++++|++.. +|...+..+.|+.|++++
T Consensus 119 ~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~~-l~~~~~~~~~L~~L~ls~ 195 (394)
T COG4886 119 TSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLSD-LPKLLSNLSNLNNLDLSG 195 (394)
T ss_pred eEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhhh-hhhhhhhhhhhhheeccC
Confidence 67777777777 5566666664 7777777777777 555567777777777777777776 444444667777777777
Q ss_pred ccCcccCCCCCCCCCCCCccEEEecCCccccccchhhHHhHHhhhhcCCcccccccccCCCCCCceeeEEEEEeccchhh
Q 019924 121 NRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKM 200 (334)
Q Consensus 121 N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 200 (334)
|++. .+|... .....|++|++++|.+...+ ..+.++..+..+....... ... ...
T Consensus 196 N~i~-~l~~~~--~~~~~L~~l~~~~N~~~~~~--~~~~~~~~l~~l~l~~n~~-------------------~~~-~~~ 250 (394)
T COG4886 196 NKIS-DLPPEI--ELLSALEELDLSNNSIIELL--SSLSNLKNLSGLELSNNKL-------------------EDL-PES 250 (394)
T ss_pred Cccc-cCchhh--hhhhhhhhhhhcCCcceecc--hhhhhcccccccccCCcee-------------------eec-cch
Confidence 7774 333322 23445777777777422221 1133333332222101000 000 223
Q ss_pred hhhhhheeEEEccCcccccCCchhhhCcCCCCeeeccCCccCCC
Q 019924 201 ERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGL 244 (334)
Q Consensus 201 ~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~l 244 (334)
...++.++.|++++|.++ .++. ++.+.+++.|++++|.++..
T Consensus 251 ~~~l~~l~~L~~s~n~i~-~i~~-~~~~~~l~~L~~s~n~~~~~ 292 (394)
T COG4886 251 IGNLSNLETLDLSNNQIS-SISS-LGSLTNLRELDLSGNSLSNA 292 (394)
T ss_pred hccccccceecccccccc-cccc-ccccCccCEEeccCcccccc
Confidence 334677999999999998 5554 88999999999999998754
No 28
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.25 E-value=1.5e-12 Score=104.13 Aligned_cols=127 Identities=29% Similarity=0.380 Sum_probs=50.5
Q ss_pred CCCcccEEEcCCCCCCCCCCCCCC-CCCeEECCCCCCCCEEeCCCCcCccccCcCccCCCCccEEeCCCCccccCCCccc
Q 019924 5 GIATLYYLDLSNNFLTNIEYFPPT-NMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSL 83 (334)
Q Consensus 5 ~l~~L~~L~Ls~n~l~~~~~~~~~-~L~~L~l~~n~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l 83 (334)
+..+++.|+|++|.|+.+.. +. .+..| +.|++++|.|+. + ..+..++.|++|++++|+|+ .+++.+
T Consensus 17 n~~~~~~L~L~~n~I~~Ie~--L~~~l~~L--------~~L~Ls~N~I~~-l-~~l~~L~~L~~L~L~~N~I~-~i~~~l 83 (175)
T PF14580_consen 17 NPVKLRELNLRGNQISTIEN--LGATLDKL--------EVLDLSNNQITK-L-EGLPGLPRLKTLDLSNNRIS-SISEGL 83 (175)
T ss_dssp -------------------S----TT-TT----------EEE-TTS--S----TT----TT--EEE--SS----S-CHHH
T ss_pred cccccccccccccccccccc--hhhhhcCC--------CEEECCCCCCcc-c-cCccChhhhhhcccCCCCCC-ccccch
Confidence 34568999999999987643 22 33344 889999999984 3 35788999999999999999 455445
Q ss_pred -cCCCCCCEEEccCCcCCcCC-ChhhhcCCCCCEEEeecccCcccCC-CCCCCCCCCCccEEEe
Q 019924 84 -VNCHHLEVLNVGNNQINDNF-PNWLEILPELQVLILRSNRFWGPIG-ENTTIVPFPSLRIIDL 144 (334)
Q Consensus 84 -~~l~~L~~L~Ls~N~l~~~~-~~~l~~l~~L~~L~L~~N~l~~~~~-~~~~~~~l~~L~~L~L 144 (334)
..+++|++|++++|+|.... -..++.+++|+.|++.+|+++.... ..+.+..+|+|+.||-
T Consensus 84 ~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 84 DKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp HHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred HHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence 46899999999999997632 2456789999999999999864311 1123456888888874
No 29
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.25 E-value=1.4e-12 Score=109.61 Aligned_cols=42 Identities=31% Similarity=0.421 Sum_probs=34.8
Q ss_pred hhheeEEEccCcccccC-CchhhhCcCCCCeeeccCCccCCCC
Q 019924 204 LTIFMTIDLSSNKFQGG-IPEVVGKLNLLKGLNISHNNLTGLC 245 (334)
Q Consensus 204 l~~L~~L~Ls~N~l~~~-~p~~l~~l~~L~~L~Ls~N~l~~l~ 245 (334)
+.+|..||+++|+|... -...++++|.|+.+.|.+|++.++.
T Consensus 373 LYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~v 415 (490)
T KOG1259|consen 373 LYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSV 415 (490)
T ss_pred hhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccc
Confidence 66789999999999732 2356899999999999999998754
No 30
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.24 E-value=1.3e-12 Score=114.90 Aligned_cols=199 Identities=21% Similarity=0.219 Sum_probs=119.5
Q ss_pred CCCcccEEEcCCCCCCCCCC----CCCCCCCeEECCCC---------------CCCCEEeCCCCcCccccCcC-ccCCCC
Q 019924 5 GIATLYYLDLSNNFLTNIEY----FPPTNMTQLNFDSN---------------LTHKVLDMRMNNFNGKIPRK-FVKSCN 64 (334)
Q Consensus 5 ~l~~L~~L~Ls~n~l~~~~~----~~~~~L~~L~l~~n---------------~~L~~L~Ls~N~l~~~~p~~-~~~l~~ 64 (334)
++++|+...|.+......+. ..+++++.||++.| ++|+.|+++.|.+....... -..+.+
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~ 198 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH 198 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence 56778888888887765442 45667777777776 66777777777665221111 123566
Q ss_pred ccEEeCCCCccccC-CCccccCCCCCCEEEccCCcCCcCCChhhhcCCCCCEEEeecccCcccCCCCCCCCCCCCccEEE
Q 019924 65 LTSLNLNGNRLEGP-LPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIID 143 (334)
Q Consensus 65 L~~L~L~~n~l~~~-~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ 143 (334)
|+.|.++.|.++.. +......+++|+.|++..|...........-+..|++|||++|++.. .+.....+.++.|+.|+
T Consensus 199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~-~~~~~~~~~l~~L~~Ln 277 (505)
T KOG3207|consen 199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLID-FDQGYKVGTLPGLNQLN 277 (505)
T ss_pred hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccc-cccccccccccchhhhh
Confidence 77777777777621 22234456677777777774222222233345667777777777632 22222345667777777
Q ss_pred ecCCccccccchhhHHhHHhhhhcCCcccccccccCCCCCCceeeEEEEEeccchhhhhhhhheeEEEccCcccccC-Cc
Q 019924 144 LSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGG-IP 222 (334)
Q Consensus 144 Ls~N~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~p 222 (334)
++.+.+.+...... ..+ +-...+++|++|+++.|++... .-
T Consensus 278 ls~tgi~si~~~d~----~s~----------------------------------~kt~~f~kL~~L~i~~N~I~~w~sl 319 (505)
T KOG3207|consen 278 LSSTGIASIAEPDV----ESL----------------------------------DKTHTFPKLEYLNISENNIRDWRSL 319 (505)
T ss_pred ccccCcchhcCCCc----cch----------------------------------hhhcccccceeeecccCcccccccc
Confidence 77776654321110 000 0111268899999999999632 23
Q ss_pred hhhhCcCCCCeeeccCCccC
Q 019924 223 EVVGKLNLLKGLNISHNNLT 242 (334)
Q Consensus 223 ~~l~~l~~L~~L~Ls~N~l~ 242 (334)
..+..+++|+.|.+..|.++
T Consensus 320 ~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 320 NHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred chhhccchhhhhhccccccc
Confidence 45667788899999999887
No 31
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.18 E-value=2.9e-12 Score=107.79 Aligned_cols=133 Identities=22% Similarity=0.298 Sum_probs=67.6
Q ss_pred CCccEEeCCCCccccCCCccccCCCCCCEEEccCCcCCcCCChhhhcCCCCCEEEeecccCcccCCCCCCCCCCCCccEE
Q 019924 63 CNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRII 142 (334)
Q Consensus 63 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L 142 (334)
+.|+++||++|.|+ .+.++..-.++++.|++|+|.+... +.++.+++|+.|||++|.++....- - ..+.+.++|
T Consensus 284 q~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls~~~Gw-h--~KLGNIKtL 357 (490)
T KOG1259|consen 284 QELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLAECVGW-H--LKLGNIKTL 357 (490)
T ss_pred hhhhhccccccchh-hhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhHhhhhh-H--hhhcCEeee
Confidence 34666666666665 4555555556666666666666542 2255666666666666665322111 1 234555666
Q ss_pred EecCCccccccchhhHHhHHhhhhcCCcccccccccCCCCCCceeeEEEEEeccchhhhhhhhheeEEEccCcccccCCc
Q 019924 143 DLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIP 222 (334)
Q Consensus 143 ~Ls~N~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p 222 (334)
.++.|.+... +-+..+-+|..++..++.+..+... .....+|.|+.+.|.+|.+. .+|
T Consensus 358 ~La~N~iE~L---SGL~KLYSLvnLDl~~N~Ie~ldeV------------------~~IG~LPCLE~l~L~~NPl~-~~v 415 (490)
T KOG1259|consen 358 KLAQNKIETL---SGLRKLYSLVNLDLSSNQIEELDEV------------------NHIGNLPCLETLRLTGNPLA-GSV 415 (490)
T ss_pred ehhhhhHhhh---hhhHhhhhheeccccccchhhHHHh------------------cccccccHHHHHhhcCCCcc-ccc
Confidence 6666655432 1122222222222222222111110 11123677888999999998 444
Q ss_pred h
Q 019924 223 E 223 (334)
Q Consensus 223 ~ 223 (334)
+
T Consensus 416 d 416 (490)
T KOG1259|consen 416 D 416 (490)
T ss_pred h
Confidence 3
No 32
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.17 E-value=8.8e-13 Score=119.44 Aligned_cols=138 Identities=24% Similarity=0.335 Sum_probs=100.1
Q ss_pred CCcccEEEcCCCCCCCCCC--CCCCCCCeEECCCC------------CCCCEEeCCCCcCccccCcCccCCCCccEEeCC
Q 019924 6 IATLYYLDLSNNFLTNIEY--FPPTNMTQLNFDSN------------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLN 71 (334)
Q Consensus 6 l~~L~~L~Ls~n~l~~~~~--~~~~~L~~L~l~~n------------~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~ 71 (334)
+.--...|++.|++..++. +.|..|+.+.+..| ..|++|||+.|+++ .+|..++.++ |+.|-++
T Consensus 74 ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~s 151 (722)
T KOG0532|consen 74 LTDTVFADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVS 151 (722)
T ss_pred ccchhhhhccccccccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEe
Confidence 3445667888888887665 55556666666555 45677888888887 7777777664 7888888
Q ss_pred CCccccCCCccccCCCCCCEEEccCCcCCcCCChhhhcCCCCCEEEeecccCcccCCCCCCCCCCCCccEEEecCCcccc
Q 019924 72 GNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTG 151 (334)
Q Consensus 72 ~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~ 151 (334)
+|+++ .+|+.++.+..|..||.+.|.+.. +|..++.+.+|+.|.++.|++.. +|... ..+ .|..||+|+|++..
T Consensus 152 NNkl~-~lp~~ig~~~tl~~ld~s~nei~s-lpsql~~l~slr~l~vrRn~l~~-lp~El--~~L-pLi~lDfScNkis~ 225 (722)
T KOG0532|consen 152 NNKLT-SLPEEIGLLPTLAHLDVSKNEIQS-LPSQLGYLTSLRDLNVRRNHLED-LPEEL--CSL-PLIRLDFSCNKISY 225 (722)
T ss_pred cCccc-cCCcccccchhHHHhhhhhhhhhh-chHHhhhHHHHHHHHHhhhhhhh-CCHHH--hCC-ceeeeecccCceee
Confidence 88887 677778877888888888888876 67777788888888888888743 34433 333 47788888888874
No 33
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.14 E-value=5.2e-12 Score=108.21 Aligned_cols=195 Identities=23% Similarity=0.271 Sum_probs=113.6
Q ss_pred CCCcccEEEcCCCCCCCCCCCCCCCCCeEECCCCCCCCEEeCCCCcCccc-------------cCcCccCCCCccEEeCC
Q 019924 5 GIATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGK-------------IPRKFVKSCNLTSLNLN 71 (334)
Q Consensus 5 ~l~~L~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n~~L~~L~Ls~N~l~~~-------------~p~~~~~l~~L~~L~L~ 71 (334)
+.++|++||||+|.+....+ +.|..| ++.+.+|++|.|.+|.+... ..+....-++|+.+..+
T Consensus 90 ~~~~L~~ldLSDNA~G~~g~---~~l~~l-l~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~ 165 (382)
T KOG1909|consen 90 GCPKLQKLDLSDNAFGPKGI---RGLEEL-LSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICG 165 (382)
T ss_pred cCCceeEeeccccccCccch---HHHHHH-HHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEee
Confidence 44566677777776654332 111111 22234446666666665411 11123334567777777
Q ss_pred CCccccC----CCccccCCCCCCEEEccCCcCCcCC----ChhhhcCCCCCEEEeecccCcccCC--CCCCCCCCCCccE
Q 019924 72 GNRLEGP----LPPSLVNCHHLEVLNVGNNQINDNF----PNWLEILPELQVLILRSNRFWGPIG--ENTTIVPFPSLRI 141 (334)
Q Consensus 72 ~n~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~~----~~~l~~l~~L~~L~L~~N~l~~~~~--~~~~~~~l~~L~~ 141 (334)
+|++... +...|...+.|+.+.++.|.|.... ...+..+++|+.|||..|-|+.... -.-.+..++.|+.
T Consensus 166 rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~E 245 (382)
T KOG1909|consen 166 RNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRE 245 (382)
T ss_pred ccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchhee
Confidence 7776532 2334566677777777777764321 2345567777777777777642211 1112355667777
Q ss_pred EEecCCccccccchhhHHhHHhhhhcCCcccccccccCCCCCCceeeEEEEEeccchhhhhhhhheeEEEccCcccccC-
Q 019924 142 IDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGG- 220 (334)
Q Consensus 142 L~Ls~N~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~- 220 (334)
|++++|.+.......+...+.. ..+.|+.|.+.+|.++..
T Consensus 246 l~l~dcll~~~Ga~a~~~al~~---------------------------------------~~p~L~vl~l~gNeIt~da 286 (382)
T KOG1909|consen 246 LNLGDCLLENEGAIAFVDALKE---------------------------------------SAPSLEVLELAGNEITRDA 286 (382)
T ss_pred ecccccccccccHHHHHHHHhc---------------------------------------cCCCCceeccCcchhHHHH
Confidence 7777777765444333332221 257899999999999843
Q ss_pred ---CchhhhCcCCCCeeeccCCccC
Q 019924 221 ---IPEVVGKLNLLKGLNISHNNLT 242 (334)
Q Consensus 221 ---~p~~l~~l~~L~~L~Ls~N~l~ 242 (334)
+...+...+.|+.|+|++|.+.
T Consensus 287 ~~~la~~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 287 ALALAACMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred HHHHHHHHhcchhhHHhcCCccccc
Confidence 3344566899999999999984
No 34
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.11 E-value=2e-11 Score=104.65 Aligned_cols=198 Identities=19% Similarity=0.184 Sum_probs=143.0
Q ss_pred CCCcccEEEcCCCCCCCCCC-------CCCCCCCeEECCCC-----------------------CCCCEEeCCCCcCccc
Q 019924 5 GIATLYYLDLSNNFLTNIEY-------FPPTNMTQLNFDSN-----------------------LTHKVLDMRMNNFNGK 54 (334)
Q Consensus 5 ~l~~L~~L~Ls~n~l~~~~~-------~~~~~L~~L~l~~n-----------------------~~L~~L~Ls~N~l~~~ 54 (334)
.+.+++.++||+|.+..... ...+.|+..++++- +.|++||||.|.+...
T Consensus 28 ~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~ 107 (382)
T KOG1909|consen 28 PMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPK 107 (382)
T ss_pred ccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCcc
Confidence 45788999999999874332 44557777777776 5899999999999865
Q ss_pred cCcC----ccCCCCccEEeCCCCccccC-------------CCccccCCCCCCEEEccCCcCCcCCC----hhhhcCCCC
Q 019924 55 IPRK----FVKSCNLTSLNLNGNRLEGP-------------LPPSLVNCHHLEVLNVGNNQINDNFP----NWLEILPEL 113 (334)
Q Consensus 55 ~p~~----~~~l~~L~~L~L~~n~l~~~-------------~p~~l~~l~~L~~L~Ls~N~l~~~~~----~~l~~l~~L 113 (334)
.+.. +..+..|+.|.|.+|.+... ...-.+.-++|+++...+|++..... ..|...+.|
T Consensus 108 g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~l 187 (382)
T KOG1909|consen 108 GIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTL 187 (382)
T ss_pred chHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhcccc
Confidence 5544 44578999999999998622 11223456789999999999976332 356677899
Q ss_pred CEEEeecccCcccCC--CCCCCCCCCCccEEEecCCccccccchhhHHhHHhhhhcCCcccccccccCCCCCCceeeEEE
Q 019924 114 QVLILRSNRFWGPIG--ENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIIL 191 (334)
Q Consensus 114 ~~L~L~~N~l~~~~~--~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~ 191 (334)
+.+.+..|.|...-. ...++..++.|+.|||.+|-++..........
T Consensus 188 eevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~Laka------------------------------- 236 (382)
T KOG1909|consen 188 EEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKA------------------------------- 236 (382)
T ss_pred ceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHH-------------------------------
Confidence 999999998732111 11145789999999999998875432221111
Q ss_pred EEeccchhhhhhhhheeEEEccCcccccCCchhh-----hCcCCCCeeeccCCccC
Q 019924 192 TIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVV-----GKLNLLKGLNISHNNLT 242 (334)
Q Consensus 192 ~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l-----~~l~~L~~L~Ls~N~l~ 242 (334)
...+++|++|++++|.+...-..++ ...|+|+.|.+.+|.++
T Consensus 237 ---------L~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt 283 (382)
T KOG1909|consen 237 ---------LSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEIT 283 (382)
T ss_pred ---------hcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhH
Confidence 1126789999999999986654444 24689999999999998
No 35
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=99.09 E-value=7.2e-11 Score=77.97 Aligned_cols=58 Identities=29% Similarity=0.424 Sum_probs=29.5
Q ss_pred CCEEeCCCCcCccccCcCccCCCCccEEeCCCCccccCCCccccCCCCCCEEEccCCc
Q 019924 41 HKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQ 98 (334)
Q Consensus 41 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~ 98 (334)
|++|++++|+++...+..|.++++|++|++++|+++...|..|.++++|++|++++|+
T Consensus 3 L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 3 LESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp ESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 3455555555554444455555555555555555554444455555555555555554
No 36
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=99.08 E-value=8.5e-11 Score=77.63 Aligned_cols=61 Identities=36% Similarity=0.495 Sum_probs=44.1
Q ss_pred CCccEEeCCCCccccCCCccccCCCCCCEEEccCCcCCcCCChhhhcCCCCCEEEeecccC
Q 019924 63 CNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRF 123 (334)
Q Consensus 63 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l 123 (334)
++|++|++++|+++...+..|.++++|++|++++|+++...|..|..+++|++|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 3577777777777755556777777777777777777776666777777777777777764
No 37
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.06 E-value=2.2e-11 Score=107.30 Aligned_cols=149 Identities=23% Similarity=0.216 Sum_probs=114.8
Q ss_pred cCCCcccEEEcCCCCCCCCCC-----CCCCCCCeEECCCC--------------CCCCEEeCCCCcCccc-cCcCccCCC
Q 019924 4 LGIATLYYLDLSNNFLTNIEY-----FPPTNMTQLNFDSN--------------LTHKVLDMRMNNFNGK-IPRKFVKSC 63 (334)
Q Consensus 4 ~~l~~L~~L~Ls~n~l~~~~~-----~~~~~L~~L~l~~n--------------~~L~~L~Ls~N~l~~~-~p~~~~~l~ 63 (334)
..|++++.||||+|-+....+ .++++|+.|+++.| +.|+.|.|+.|.++.. +......++
T Consensus 143 k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fP 222 (505)
T KOG3207|consen 143 KILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFP 222 (505)
T ss_pred hhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCC
Confidence 358999999999998887655 78999999999999 7889999999999842 333455688
Q ss_pred CccEEeCCCCccccCCCccccCCCCCCEEEccCCcCCcCCC--hhhhcCCCCCEEEeecccCcccC-CCCC---CCCCCC
Q 019924 64 NLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFP--NWLEILPELQVLILRSNRFWGPI-GENT---TIVPFP 137 (334)
Q Consensus 64 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~--~~l~~l~~L~~L~L~~N~l~~~~-~~~~---~~~~l~ 137 (334)
+|+.|+|.+|............+..|+.|||++|++.. .+ ...+.++.|..|+++.+.+...- |+.- ....++
T Consensus 223 sl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~-~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~ 301 (505)
T KOG3207|consen 223 SLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLID-FDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFP 301 (505)
T ss_pred cHHHhhhhcccccceecchhhhhhHHhhccccCCcccc-cccccccccccchhhhhccccCcchhcCCCccchhhhcccc
Confidence 99999999995332333445567889999999999876 34 45678999999999999985332 2210 124678
Q ss_pred CccEEEecCCcccccc
Q 019924 138 SLRIIDLSHNEFTGVL 153 (334)
Q Consensus 138 ~L~~L~Ls~N~l~~~~ 153 (334)
+|++|+++.|++....
T Consensus 302 kL~~L~i~~N~I~~w~ 317 (505)
T KOG3207|consen 302 KLEYLNISENNIRDWR 317 (505)
T ss_pred cceeeecccCcccccc
Confidence 9999999999997553
No 38
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=99.05 E-value=4.1e-11 Score=110.69 Aligned_cols=178 Identities=26% Similarity=0.300 Sum_probs=109.0
Q ss_pred CCCEEeCCCCcCccccCcCccCCCCccEEeCCCCccccCCCccccCCCCCCEEEccCCcCCcCCChhhhcCCCCCEEEee
Q 019924 40 THKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILR 119 (334)
Q Consensus 40 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~ 119 (334)
+|+.|++.+|+|. .+...+..+.+|++|++++|.|+.. ..+..++.|+.|++++|.+... ..+..++.|+.++++
T Consensus 96 ~l~~l~l~~n~i~-~i~~~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L~l~~N~i~~~--~~~~~l~~L~~l~l~ 170 (414)
T KOG0531|consen 96 SLEALDLYDNKIE-KIENLLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKELNLSGNLISDI--SGLESLKSLKLLDLS 170 (414)
T ss_pred ceeeeeccccchh-hcccchhhhhcchheeccccccccc--cchhhccchhhheeccCcchhc--cCCccchhhhcccCC
Confidence 3377777777777 3333366677777777777777744 2356666677777777777652 344557777777777
Q ss_pred cccCcccCCCCCCCCCCCCccEEEecCCccccccchhhHHhHHhhhhcCCcccccccccCCCCCCceeeEEEEEeccchh
Q 019924 120 SNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIK 199 (334)
Q Consensus 120 ~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 199 (334)
+|++...-+. . ...+.+++.+++..|.+...........+..+...++ .+..+.+..
T Consensus 171 ~n~i~~ie~~-~-~~~~~~l~~l~l~~n~i~~i~~~~~~~~l~~~~l~~n---~i~~~~~l~------------------ 227 (414)
T KOG0531|consen 171 YNRIVDIEND-E-LSELISLEELDLGGNSIREIEGLDLLKKLVLLSLLDN---KISKLEGLN------------------ 227 (414)
T ss_pred cchhhhhhhh-h-hhhccchHHHhccCCchhcccchHHHHHHHHhhcccc---cceeccCcc------------------
Confidence 7777543331 0 1456677777777777765433332332222211111 111111111
Q ss_pred hhhhhh--heeEEEccCcccccCCchhhhCcCCCCeeeccCCccCCCCCCCc
Q 019924 200 MERILT--IFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGLCGFPL 249 (334)
Q Consensus 200 ~~~~l~--~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~l~~~~~ 249 (334)
.+. .|+.+++++|.+. .++..+..+..+..|++..|+++.+.+.+.
T Consensus 228 ---~~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~~~~~~ 275 (414)
T KOG0531|consen 228 ---ELVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISNLEGLER 275 (414)
T ss_pred ---cchhHHHHHHhcccCccc-cccccccccccccccchhhccccccccccc
Confidence 011 3788999999987 555667788889999999999887776543
No 39
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.96 E-value=4.9e-10 Score=103.08 Aligned_cols=114 Identities=32% Similarity=0.479 Sum_probs=58.1
Q ss_pred CcccEEEcCCCCCCCCCC--CCCC-CCCeEECCCC------------CCCCEEeCCCCcCccccCcCccCCCCccEEeCC
Q 019924 7 ATLYYLDLSNNFLTNIEY--FPPT-NMTQLNFDSN------------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLN 71 (334)
Q Consensus 7 ~~L~~L~Ls~n~l~~~~~--~~~~-~L~~L~l~~n------------~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~ 71 (334)
+.++.|++.+|.++.+++ .... +|+.|++++| +.|+.|++++|+++ .+|...+.+++|+.|+++
T Consensus 116 ~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ls 194 (394)
T COG4886 116 TNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLS 194 (394)
T ss_pred cceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhheecc
Confidence 445566666666665555 2232 5566665555 45566666666665 444444455556666666
Q ss_pred CCccccCCCccccCCCCCCEEEccCCcCCcCCChhhhcCCCCCEEEeecccC
Q 019924 72 GNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRF 123 (334)
Q Consensus 72 ~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l 123 (334)
+|+++ .+|........|++|.+++|.+.. .+..+..++.+..+.+.+|++
T Consensus 195 ~N~i~-~l~~~~~~~~~L~~l~~~~N~~~~-~~~~~~~~~~l~~l~l~~n~~ 244 (394)
T COG4886 195 GNKIS-DLPPEIELLSALEELDLSNNSIIE-LLSSLSNLKNLSGLELSNNKL 244 (394)
T ss_pred CCccc-cCchhhhhhhhhhhhhhcCCccee-cchhhhhcccccccccCCcee
Confidence 66665 444433334445555555553222 233344444444444444443
No 40
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.76 E-value=3.4e-10 Score=105.69 Aligned_cols=102 Identities=25% Similarity=0.228 Sum_probs=52.6
Q ss_pred CCEEeCCCCcCccccCcCccCCCCccEEeCCCCccccCCCccccCCCCCCEEEccCCcCCcCCChh-hhcCCCCCEEEee
Q 019924 41 HKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNW-LEILPELQVLILR 119 (334)
Q Consensus 41 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~-l~~l~~L~~L~L~ 119 (334)
|.+.+.+.|.+. .+..++.-++.|+.|||++|+++.. +.+..+++|++|||+.|.+.. +|.. ...+ +|+.|.++
T Consensus 166 L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~-vp~l~~~gc-~L~~L~lr 240 (1096)
T KOG1859|consen 166 LATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRH-VPQLSMVGC-KLQLLNLR 240 (1096)
T ss_pred HhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhcc-ccccchhhh-hheeeeec
Confidence 444455555555 4445555555666666666666532 245556666666666666554 2321 1122 26666666
Q ss_pred cccCcccCCCCCCCCCCCCccEEEecCCcccc
Q 019924 120 SNRFWGPIGENTTIVPFPSLRIIDLSHNEFTG 151 (334)
Q Consensus 120 ~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~ 151 (334)
+|.++... .+.++.+|+.||+++|-+.+
T Consensus 241 nN~l~tL~----gie~LksL~~LDlsyNll~~ 268 (1096)
T KOG1859|consen 241 NNALTTLR----GIENLKSLYGLDLSYNLLSE 268 (1096)
T ss_pred ccHHHhhh----hHHhhhhhhccchhHhhhhc
Confidence 66554221 12455566666666665544
No 41
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.69 E-value=2.6e-08 Score=98.97 Aligned_cols=83 Identities=28% Similarity=0.315 Sum_probs=65.1
Q ss_pred CCCCEEeCCCCcCccccCcCccCCCCccEEeCCCCccccCCCccccCCCCCCEEEccCCcCCcCCChhhhcCCCCCEEEe
Q 019924 39 LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLIL 118 (334)
Q Consensus 39 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L 118 (334)
+.|++|||++|.=.+.+|..++.+-+|++|+++++.++ .+|.++.++.+|.+|++..+.-...+|.....+++|++|.+
T Consensus 571 ~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l 649 (889)
T KOG4658|consen 571 PLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRL 649 (889)
T ss_pred cceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEe
Confidence 44578888877666688888888888888888888887 78888888888888888887665556677777888888888
Q ss_pred eccc
Q 019924 119 RSNR 122 (334)
Q Consensus 119 ~~N~ 122 (334)
..-.
T Consensus 650 ~~s~ 653 (889)
T KOG4658|consen 650 PRSA 653 (889)
T ss_pred eccc
Confidence 6654
No 42
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.55 E-value=1.2e-08 Score=94.28 Aligned_cols=175 Identities=25% Similarity=0.270 Sum_probs=116.3
Q ss_pred CCCEEeCCCCcCccccCcCccCCCCccEEeCCCCccccCCCccccCCCCCCEEEccCCcCCcCCChhhhcCCCCCEEEee
Q 019924 40 THKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILR 119 (334)
Q Consensus 40 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~ 119 (334)
.++.+++..|.+. ..-..+..+++|+.|++.+|+|. .+...+..+++|++|++++|.|+... .+..++.|+.|+++
T Consensus 73 ~l~~l~l~~n~i~-~~~~~l~~~~~l~~l~l~~n~i~-~i~~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~l~ 148 (414)
T KOG0531|consen 73 SLKELNLRQNLIA-KILNHLSKLKSLEALDLYDNKIE-KIENLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKELNLS 148 (414)
T ss_pred hHHhhccchhhhh-hhhcccccccceeeeeccccchh-hcccchhhhhcchheecccccccccc--chhhccchhhheec
Confidence 3466778888887 33455788899999999999998 44434778999999999999998843 46677889999999
Q ss_pred cccCcccCCCCCCCCCCCCccEEEecCCccccccch--hhHHhHHhhhhcCCcccccccccCCCCCCceeeEEEEEeccc
Q 019924 120 SNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLT--GYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGID 197 (334)
Q Consensus 120 ~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~--~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 197 (334)
+|.++.. ..+ ..++.|+.+++++|.+....+. .....+..+....+... .
T Consensus 149 ~N~i~~~--~~~--~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~------------------------~ 200 (414)
T KOG0531|consen 149 GNLISDI--SGL--ESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIR------------------------E 200 (414)
T ss_pred cCcchhc--cCC--ccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchh------------------------c
Confidence 9998533 222 5588999999999998866551 22333333333222100 0
Q ss_pred hhhhhhhhheeEEEccCcccccCCchhhhCcC--CCCeeeccCCccCCC-CCCC
Q 019924 198 IKMERILTIFMTIDLSSNKFQGGIPEVVGKLN--LLKGLNISHNNLTGL-CGFP 248 (334)
Q Consensus 198 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~--~L~~L~Ls~N~l~~l-~~~~ 248 (334)
......+..+..+++..|.++..-+ +..+. .|+.+++++|++... .+.+
T Consensus 201 i~~~~~~~~l~~~~l~~n~i~~~~~--l~~~~~~~L~~l~l~~n~i~~~~~~~~ 252 (414)
T KOG0531|consen 201 IEGLDLLKKLVLLSLLDNKISKLEG--LNELVMLHLRELYLSGNRISRSPEGLE 252 (414)
T ss_pred ccchHHHHHHHHhhcccccceeccC--cccchhHHHHHHhcccCcccccccccc
Confidence 1111223444555888888873322 22233 388999999999866 4433
No 43
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.53 E-value=2.4e-09 Score=100.11 Aligned_cols=127 Identities=28% Similarity=0.297 Sum_probs=93.5
Q ss_pred CccEEeCCCCccccCCCccccCCCCCCEEEccCCcCCcCCChhhhcCCCCCEEEeecccCcccCCCCCCCCCCCCccEEE
Q 019924 64 NLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIID 143 (334)
Q Consensus 64 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ 143 (334)
.|.+.+.++|.+. ....++.-++.|+.|||++|+++.. +.+..+++|++|||++|.++. +|..- -..+ .|+.|.
T Consensus 165 ~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~-vp~l~-~~gc-~L~~L~ 238 (1096)
T KOG1859|consen 165 KLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRH-VPQLS-MVGC-KLQLLN 238 (1096)
T ss_pred hHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhcc-ccccc-hhhh-hheeee
Confidence 5788899999998 6777888889999999999999873 478899999999999999863 33321 1333 399999
Q ss_pred ecCCccccccchhhHHhHHhhhhcCCcccccccccCCCCCCceeeEEEEEeccchhhhhhhhheeEEEccCcccccC-Cc
Q 019924 144 LSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGG-IP 222 (334)
Q Consensus 144 Ls~N~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~p 222 (334)
+++|.++.... +.+ +.+|+.||+++|-|.+. --
T Consensus 239 lrnN~l~tL~g---ie~-------------------------------------------LksL~~LDlsyNll~~hseL 272 (1096)
T KOG1859|consen 239 LRNNALTTLRG---IEN-------------------------------------------LKSLYGLDLSYNLLSEHSEL 272 (1096)
T ss_pred ecccHHHhhhh---HHh-------------------------------------------hhhhhccchhHhhhhcchhh
Confidence 99998875422 111 45567788888877642 12
Q ss_pred hhhhCcCCCCeeeccCCccC
Q 019924 223 EVVGKLNLLKGLNISHNNLT 242 (334)
Q Consensus 223 ~~l~~l~~L~~L~Ls~N~l~ 242 (334)
..+..+..|+.|+|.+|++-
T Consensus 273 ~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 273 EPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred hHHHHHHHHHHHhhcCCccc
Confidence 33456677778888888875
No 44
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.44 E-value=1.6e-07 Score=56.98 Aligned_cols=41 Identities=27% Similarity=0.456 Sum_probs=34.7
Q ss_pred hheeEEEccCcccccCCchhhhCcCCCCeeeccCCccCCCCC
Q 019924 205 TIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGLCG 246 (334)
Q Consensus 205 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~l~~ 246 (334)
++|++|++++|+|+ .+|..++++++|+.|++++|+|+++.+
T Consensus 1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~~i~~ 41 (44)
T PF12799_consen 1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPISDISP 41 (44)
T ss_dssp TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCSBEGG
T ss_pred CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCCCCcC
Confidence 46899999999999 677789999999999999999987654
No 45
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.43 E-value=2.8e-07 Score=91.71 Aligned_cols=107 Identities=24% Similarity=0.259 Sum_probs=87.5
Q ss_pred CCCCEEeCCCCc--CccccCcCccCCCCccEEeCCCCccccCCCccccCCCCCCEEEccCCcCCcCCChhhhcCCCCCEE
Q 019924 39 LTHKVLDMRMNN--FNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVL 116 (334)
Q Consensus 39 ~~L~~L~Ls~N~--l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L 116 (334)
+.|++|-+..|. +....+..|..++.|+.|||++|.=-+.+|..++++-+|++|++++..+.. +|..++++..|.+|
T Consensus 545 ~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~-LP~~l~~Lk~L~~L 623 (889)
T KOG4658|consen 545 PKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISH-LPSGLGNLKKLIYL 623 (889)
T ss_pred CccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccc-cchHHHHHHhhhee
Confidence 345667777775 553445568889999999999987666899999999999999999999986 89999999999999
Q ss_pred EeecccCcccCCCCCCCCCCCCccEEEecCCc
Q 019924 117 ILRSNRFWGPIGENTTIVPFPSLRIIDLSHNE 148 (334)
Q Consensus 117 ~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~ 148 (334)
++..+.....++... ..+++|++|.+....
T Consensus 624 nl~~~~~l~~~~~i~--~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 624 NLEVTGRLESIPGIL--LELQSLRVLRLPRSA 653 (889)
T ss_pred ccccccccccccchh--hhcccccEEEeeccc
Confidence 999987655555443 669999999987654
No 46
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.41 E-value=4.6e-08 Score=81.70 Aligned_cols=217 Identities=22% Similarity=0.244 Sum_probs=136.0
Q ss_pred CCcccEEEcCCCCCCCCCC-------CCCCCCCeEECCCC-----------------------CCCCEEeCCCCcCcccc
Q 019924 6 IATLYYLDLSNNFLTNIEY-------FPPTNMTQLNFDSN-----------------------LTHKVLDMRMNNFNGKI 55 (334)
Q Consensus 6 l~~L~~L~Ls~n~l~~~~~-------~~~~~L~~L~l~~n-----------------------~~L~~L~Ls~N~l~~~~ 55 (334)
+..++.+|||+|.|..... ..-.+|+..+++.- +.|+..+||.|.+....
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~ 108 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF 108 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence 5678899999999875433 33456666665554 89999999999998766
Q ss_pred CcC----ccCCCCccEEeCCCCccccC----CC---------ccccCCCCCCEEEccCCcCCcCCChh-----hhcCCCC
Q 019924 56 PRK----FVKSCNLTSLNLNGNRLEGP----LP---------PSLVNCHHLEVLNVGNNQINDNFPNW-----LEILPEL 113 (334)
Q Consensus 56 p~~----~~~l~~L~~L~L~~n~l~~~----~p---------~~l~~l~~L~~L~Ls~N~l~~~~~~~-----l~~l~~L 113 (334)
|.. ++.-+.|++|.+++|.+... +. .-..+-+.|++.....|++.. .|.. +..-..|
T Consensus 109 ~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlen-gs~~~~a~~l~sh~~l 187 (388)
T COG5238 109 PEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLEN-GSKELSAALLESHENL 187 (388)
T ss_pred chHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhcc-CcHHHHHHHHHhhcCc
Confidence 654 55678899999999988622 11 112456789999999999876 3332 2333578
Q ss_pred CEEEeecccCcccCCCCC------CCCCCCCccEEEecCCccccccchh---hHHhHHhhhhcCCcccccccccCCCCCC
Q 019924 114 QVLILRSNRFWGPIGENT------TIVPFPSLRIIDLSHNEFTGVLLTG---YLDNFKAMMHGNNISVEVDYMTPLNSSN 184 (334)
Q Consensus 114 ~~L~L~~N~l~~~~~~~~------~~~~l~~L~~L~Ls~N~l~~~~~~~---~~~~l~~L~~~~~~~~~~~~~~~~~~~~ 184 (334)
+++.+..|.|. |... .+..+.+|+.||+.+|-++-..... ....+..|..++..++
T Consensus 188 k~vki~qNgIr---pegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDC------------ 252 (388)
T COG5238 188 KEVKIQQNGIR---PEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDC------------ 252 (388)
T ss_pred eeEEeeecCcC---cchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccch------------
Confidence 99999999873 3211 2245688999999999887432211 1222222222222111
Q ss_pred ceeeEEEEEeccch-hhh-----hhhhheeEEEccCcccccCCchh-----h--hCcCCCCeeeccCCccCCCC
Q 019924 185 YYESIILTIKGIDI-KME-----RILTIFMTIDLSSNKFQGGIPEV-----V--GKLNLLKGLNISHNNLTGLC 245 (334)
Q Consensus 185 ~l~~~~~~~~~~~~-~~~-----~~l~~L~~L~Ls~N~l~~~~p~~-----l--~~l~~L~~L~Ls~N~l~~l~ 245 (334)
-++.... +.+ ...++|..|...+|.+.+.+... + .++|-|..|.+.+|+|..+.
T Consensus 253 -------lls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~E~~ 319 (388)
T COG5238 253 -------LLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIKELA 319 (388)
T ss_pred -------hhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcchhHH
Confidence 0000000 011 12567778888888776543211 1 35778888899999988543
No 47
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.37 E-value=1.8e-08 Score=75.64 Aligned_cols=119 Identities=24% Similarity=0.368 Sum_probs=76.9
Q ss_pred CEEeCCCCcCccccCcC---ccCCCCccEEeCCCCccccCCCcccc-CCCCCCEEEccCCcCCcCCChhhhcCCCCCEEE
Q 019924 42 KVLDMRMNNFNGKIPRK---FVKSCNLTSLNLNGNRLEGPLPPSLV-NCHHLEVLNVGNNQINDNFPNWLEILPELQVLI 117 (334)
Q Consensus 42 ~~L~Ls~N~l~~~~p~~---~~~l~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ 117 (334)
..+||+++++. .+++. +.....|+..++++|.+. .+|+.|. ..+.++.|++++|++.. +|..+..++.|+.|+
T Consensus 30 h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neisd-vPeE~Aam~aLr~lN 106 (177)
T KOG4579|consen 30 HFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEISD-VPEELAAMPALRSLN 106 (177)
T ss_pred hhcccccchhh-HHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhhh-chHHHhhhHHhhhcc
Confidence 56777777765 33333 444566777788888887 4454443 34577888888888877 677788888888888
Q ss_pred eecccCcccCCCCCCCCCCCCccEEEecCCccccccchhhHHhHHhhhh
Q 019924 118 LRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMH 166 (334)
Q Consensus 118 L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~ 166 (334)
++.|.+. ..|..+ ..+.++..||..+|.+.......+.+.+..+..
T Consensus 107 l~~N~l~-~~p~vi--~~L~~l~~Lds~~na~~eid~dl~~s~~~al~~ 152 (177)
T KOG4579|consen 107 LRFNPLN-AEPRVI--APLIKLDMLDSPENARAEIDVDLFYSSLPALIK 152 (177)
T ss_pred cccCccc-cchHHH--HHHHhHHHhcCCCCccccCcHHHhccccHHHHH
Confidence 8888874 334433 457777778877777765443333334444433
No 48
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.31 E-value=1.5e-08 Score=85.66 Aligned_cols=160 Identities=18% Similarity=0.170 Sum_probs=87.4
Q ss_pred CCCEEeCCCCcCcc-ccCcCccCCCCccEEeCCCCccccCCCccccCCCCCCEEEccCCc-CCcCC-ChhhhcCCCCCEE
Q 019924 40 THKVLDMRMNNFNG-KIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQ-INDNF-PNWLEILPELQVL 116 (334)
Q Consensus 40 ~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~-l~~~~-~~~l~~l~~L~~L 116 (334)
+|++||||+..|+. .+...+..+.+|+.|.+.++++...+...+++-.+|+.|+++.+. ++... .-.+..++.|++|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 45667777666652 222334556677777777777766666666667777777776642 22211 1133466677777
Q ss_pred EeecccCcccCCCCCCCCCCCCccEEEecCCccccccchhhHHhHHhhhhcCCcccccccccCCCCCCceeeEEEEEecc
Q 019924 117 ILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGI 196 (334)
Q Consensus 117 ~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 196 (334)
+++.+.+...........--++|+.|++++..-.- . ..++.
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl--~---~sh~~---------------------------------- 306 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNL--Q---KSHLS---------------------------------- 306 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhh--h---hhHHH----------------------------------
Confidence 77776654332111111112345556655543110 0 00111
Q ss_pred chhhhhhhhheeEEEccCcc-cccCCchhhhCcCCCCeeeccCCc
Q 019924 197 DIKMERILTIFMTIDLSSNK-FQGGIPEVVGKLNLLKGLNISHNN 240 (334)
Q Consensus 197 ~~~~~~~l~~L~~L~Ls~N~-l~~~~p~~l~~l~~L~~L~Ls~N~ 240 (334)
...+.+++|.+||||+|. ++......|.+++.|++|.++.+-
T Consensus 307 --tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY 349 (419)
T KOG2120|consen 307 --TLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCY 349 (419)
T ss_pred --HHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhc
Confidence 112236778888888764 555555567777888888887763
No 49
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.25 E-value=3.3e-08 Score=74.17 Aligned_cols=105 Identities=30% Similarity=0.366 Sum_probs=81.6
Q ss_pred ccEEEcCCCCCCCCCC--CCCCCCCeEECCCCCCCCEEeCCCCcCccccCcCcc-CCCCccEEeCCCCccccCCCccccC
Q 019924 9 LYYLDLSNNFLTNIEY--FPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFV-KSCNLTSLNLNGNRLEGPLPPSLVN 85 (334)
Q Consensus 9 L~~L~Ls~n~l~~~~~--~~~~~L~~L~l~~n~~L~~L~Ls~N~l~~~~p~~~~-~l~~L~~L~L~~n~l~~~~p~~l~~ 85 (334)
+-.+||+.|.+..+.. ..+....+| +..+|++|.+. ..|+.|. ..+.++.|++++|+|+ .+|..++.
T Consensus 29 ~h~ldLssc~lm~i~davy~l~~~~el--------~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aa 98 (177)
T KOG4579|consen 29 LHFLDLSSCQLMYIADAVYMLSKGYEL--------TKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAA 98 (177)
T ss_pred hhhcccccchhhHHHHHHHHHhCCceE--------EEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhh
Confidence 3456777776654433 333344444 88899999998 5555554 4568999999999999 78888999
Q ss_pred CCCCCEEEccCCcCCcCCChhhhcCCCCCEEEeecccCc
Q 019924 86 CHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFW 124 (334)
Q Consensus 86 l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~ 124 (334)
++.|+.|+++.|.+.. .|..+..+.++-.|+..+|.+.
T Consensus 99 m~aLr~lNl~~N~l~~-~p~vi~~L~~l~~Lds~~na~~ 136 (177)
T KOG4579|consen 99 MPALRSLNLRFNPLNA-EPRVIAPLIKLDMLDSPENARA 136 (177)
T ss_pred hHHhhhcccccCcccc-chHHHHHHHhHHHhcCCCCccc
Confidence 9999999999999977 6788888999999999988863
No 50
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.22 E-value=8.6e-07 Score=53.77 Aligned_cols=17 Identities=53% Similarity=0.675 Sum_probs=6.3
Q ss_pred ccCCCCCCEEEccCCcC
Q 019924 83 LVNCHHLEVLNVGNNQI 99 (334)
Q Consensus 83 l~~l~~L~~L~Ls~N~l 99 (334)
+.++++|++|++++|++
T Consensus 20 l~~l~~L~~L~l~~N~i 36 (44)
T PF12799_consen 20 LSNLPNLETLNLSNNPI 36 (44)
T ss_dssp GTTCTTSSEEEETSSCC
T ss_pred HhCCCCCCEEEecCCCC
Confidence 33333333333333333
No 51
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.14 E-value=5.2e-06 Score=66.65 Aligned_cols=86 Identities=27% Similarity=0.398 Sum_probs=57.0
Q ss_pred CCccEEeCCCCccccCCCccccCCCCCCEEEccCCcCCcCCChhhhcCCCCCEEEeecccCcccCCCCCCCCCCCCccEE
Q 019924 63 CNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRII 142 (334)
Q Consensus 63 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L 142 (334)
.+...+||++|.+.. + +.|..++.|.+|.+++|+|+.+.|..-..+++|+.|.|.+|.+.. +.+...+..++.|++|
T Consensus 42 d~~d~iDLtdNdl~~-l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~-l~dl~pLa~~p~L~~L 118 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRK-L-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQE-LGDLDPLASCPKLEYL 118 (233)
T ss_pred cccceecccccchhh-c-ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhh-hhhcchhccCCcccee
Confidence 456677777777752 2 346677777888888888777666555566778888888877632 2222233667778888
Q ss_pred EecCCcccc
Q 019924 143 DLSHNEFTG 151 (334)
Q Consensus 143 ~Ls~N~l~~ 151 (334)
.+-+|.++.
T Consensus 119 tll~Npv~~ 127 (233)
T KOG1644|consen 119 TLLGNPVEH 127 (233)
T ss_pred eecCCchhc
Confidence 777777653
No 52
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.12 E-value=4.9e-07 Score=76.63 Aligned_cols=85 Identities=24% Similarity=0.248 Sum_probs=63.2
Q ss_pred CCCCEEeCCCCcCcc--ccCcCccCCCCccEEeCCCCccccCCCccccCCCCCCEEEccCCcCCcC-CChhhhcCCCCCE
Q 019924 39 LTHKVLDMRMNNFNG--KIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDN-FPNWLEILPELQV 115 (334)
Q Consensus 39 ~~L~~L~Ls~N~l~~--~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~-~~~~l~~l~~L~~ 115 (334)
..++.+||.+|.|+. .+...+..++.|+.|+++.|++...+...=....+|++|-|.+..+.-. ....+..+|.+++
T Consensus 71 ~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vte 150 (418)
T KOG2982|consen 71 TDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTE 150 (418)
T ss_pred hhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhh
Confidence 567889999999983 4555677899999999999998854332113567899999988877432 2344567888999
Q ss_pred EEeecccC
Q 019924 116 LILRSNRF 123 (334)
Q Consensus 116 L~L~~N~l 123 (334)
|.++.|.+
T Consensus 151 lHmS~N~~ 158 (418)
T KOG2982|consen 151 LHMSDNSL 158 (418)
T ss_pred hhhccchh
Confidence 99998854
No 53
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.10 E-value=6.4e-06 Score=69.15 Aligned_cols=183 Identities=18% Similarity=0.252 Sum_probs=110.3
Q ss_pred CCCEEeCCCCcCccccCc----CccCCCCccEEeCCCCccc---cCC-------CccccCCCCCCEEEccCCcCCcCCCh
Q 019924 40 THKVLDMRMNNFNGKIPR----KFVKSCNLTSLNLNGNRLE---GPL-------PPSLVNCHHLEVLNVGNNQINDNFPN 105 (334)
Q Consensus 40 ~L~~L~Ls~N~l~~~~p~----~~~~l~~L~~L~L~~n~l~---~~~-------p~~l~~l~~L~~L~Ls~N~l~~~~~~ 105 (334)
.+..++||+|-|...... .+.+-.+|+..+++.--.. ..+ -+.+.+|++|+..+||+|.+....|.
T Consensus 31 ~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~e 110 (388)
T COG5238 31 ELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFPE 110 (388)
T ss_pred ceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccch
Confidence 348889999988754333 3444567777777654221 112 23567889999999999999776665
Q ss_pred h----hhcCCCCCEEEeecccCcccCCCC-C-----------CCCCCCCccEEEecCCccccccchhhHHhHHhhhhcCC
Q 019924 106 W----LEILPELQVLILRSNRFWGPIGEN-T-----------TIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNN 169 (334)
Q Consensus 106 ~----l~~l~~L~~L~L~~N~l~~~~~~~-~-----------~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~~~~ 169 (334)
. +++-+.|.+|.+++|.+ |.+... + ....-|.|+...+..|++..-...-+...+.+-
T Consensus 111 ~L~d~is~~t~l~HL~l~NnGl-Gp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh----- 184 (388)
T COG5238 111 ELGDLISSSTDLVHLKLNNNGL-GPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESH----- 184 (388)
T ss_pred HHHHHHhcCCCceeEEeecCCC-CccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhh-----
Confidence 4 44667899999999987 332211 1 123457899999999987643222111111110
Q ss_pred cccccccccCCCCCCceeeEEEEEeccchhhh--------hhhhheeEEEccCcccccC----CchhhhCcCCCCeeecc
Q 019924 170 ISVEVDYMTPLNSSNYYESIILTIKGIDIKME--------RILTIFMTIDLSSNKFQGG----IPEVVGKLNLLKGLNIS 237 (334)
Q Consensus 170 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~--------~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~Ls 237 (334)
..+.......+++.++.. .-+.+|+.|||.+|-++.. ..+.+..++.|+.|++.
T Consensus 185 --------------~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~ln 250 (388)
T COG5238 185 --------------ENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLN 250 (388)
T ss_pred --------------cCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhcccc
Confidence 112223333344443311 1256788888888887743 23445566778888888
Q ss_pred CCccC
Q 019924 238 HNNLT 242 (334)
Q Consensus 238 ~N~l~ 242 (334)
+|-++
T Consensus 251 DClls 255 (388)
T COG5238 251 DCLLS 255 (388)
T ss_pred chhhc
Confidence 77665
No 54
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.01 E-value=3.7e-05 Score=69.53 Aligned_cols=117 Identities=14% Similarity=0.181 Sum_probs=58.4
Q ss_pred CCcccEEEcCCCCCCCCCCCCCCCCCeEECCCCCCCCEEeCCCCcCccccCcCccCCCCccEEeCCCC-ccccCCCcccc
Q 019924 6 IATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGN-RLEGPLPPSLV 84 (334)
Q Consensus 6 l~~L~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n-~l~~~~p~~l~ 84 (334)
+.+++.|++++|.++.++ .-..+|+.|.+++|.+ ++ .+|..+. .+|++|++++| .+. .+|.
T Consensus 51 ~~~l~~L~Is~c~L~sLP-~LP~sLtsL~Lsnc~n----------Lt-sLP~~LP--~nLe~L~Ls~Cs~L~-sLP~--- 112 (426)
T PRK15386 51 ARASGRLYIKDCDIESLP-VLPNELTEITIENCNN----------LT-TLPGSIP--EGLEKLTVCHCPEIS-GLPE--- 112 (426)
T ss_pred hcCCCEEEeCCCCCcccC-CCCCCCcEEEccCCCC----------cc-cCCchhh--hhhhheEccCccccc-cccc---
Confidence 467888888888887765 3334565555544422 22 3343332 46777777776 444 3443
Q ss_pred CCCCCCEEEccCCcCCcCCChhhhcC-CCCCEEEeecccCcccCCCCCCCCCCCCccEEEecCCccc
Q 019924 85 NCHHLEVLNVGNNQINDNFPNWLEIL-PELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFT 150 (334)
Q Consensus 85 ~l~~L~~L~Ls~N~l~~~~~~~l~~l-~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~ 150 (334)
+|+.|+++.+.... +..+ ++|+.|.+.+++.. ........-.++|++|++++|...
T Consensus 113 ---sLe~L~L~~n~~~~-----L~~LPssLk~L~I~~~n~~--~~~~lp~~LPsSLk~L~Is~c~~i 169 (426)
T PRK15386 113 ---SVRSLEIKGSATDS-----IKNVPNGLTSLSINSYNPE--NQARIDNLISPSLKTLSLTGCSNI 169 (426)
T ss_pred ---ccceEEeCCCCCcc-----cccCcchHhheeccccccc--cccccccccCCcccEEEecCCCcc
Confidence 35666666554322 1112 24556655432211 000000001246777777766543
No 55
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.00 E-value=1e-05 Score=64.96 Aligned_cols=108 Identities=23% Similarity=0.213 Sum_probs=80.8
Q ss_pred CCCEEeCCCCcCccccCcCccCCCCccEEeCCCCccccCCCccccCCCCCCEEEccCCcCCcCC-ChhhhcCCCCCEEEe
Q 019924 40 THKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNF-PNWLEILPELQVLIL 118 (334)
Q Consensus 40 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~-~~~l~~l~~L~~L~L 118 (334)
+...+||++|++... ..|..++.|.+|.+++|+|+..-|.--.-+++|+.|.+.+|.|.... -+-+..+|.|++|.+
T Consensus 43 ~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltl 120 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTL 120 (233)
T ss_pred ccceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeee
Confidence 347799999999732 46788999999999999999665554455688999999999986521 123567899999999
Q ss_pred ecccCcccCC-CCCCCCCCCCccEEEecCCcc
Q 019924 119 RSNRFWGPIG-ENTTIVPFPSLRIIDLSHNEF 149 (334)
Q Consensus 119 ~~N~l~~~~~-~~~~~~~l~~L~~L~Ls~N~l 149 (334)
-+|+++..-. ....+..+++|+.||.+.-..
T Consensus 121 l~Npv~~k~~YR~yvl~klp~l~~LDF~kVt~ 152 (233)
T KOG1644|consen 121 LGNPVEHKKNYRLYVLYKLPSLRTLDFQKVTR 152 (233)
T ss_pred cCCchhcccCceeEEEEecCcceEeehhhhhH
Confidence 9999854321 122457889999999876443
No 56
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.89 E-value=7.7e-07 Score=75.50 Aligned_cols=139 Identities=22% Similarity=0.175 Sum_probs=70.5
Q ss_pred CcccEEEcCCCCCCCCCC---CCCCCCCeEECCCC---------------CCCCEEeCCCCcCccccCc-CccC-CCCcc
Q 019924 7 ATLYYLDLSNNFLTNIEY---FPPTNMTQLNFDSN---------------LTHKVLDMRMNNFNGKIPR-KFVK-SCNLT 66 (334)
Q Consensus 7 ~~L~~L~Ls~n~l~~~~~---~~~~~L~~L~l~~n---------------~~L~~L~Ls~N~l~~~~p~-~~~~-l~~L~ 66 (334)
.+|+.|.+.++++...+. ..-.+|+.|+++++ ++|..|+++.+.+....-. .+.. -++|+
T Consensus 210 ~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~ 289 (419)
T KOG2120|consen 210 SKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLT 289 (419)
T ss_pred HhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhh
Confidence 444455555555443222 33445555555555 4455555555544321110 0110 13455
Q ss_pred EEeCCCCccc---cCCCccccCCCCCCEEEccCCc-CCcCCChhhhcCCCCCEEEeecccCcccCCCCC-CCCCCCCccE
Q 019924 67 SLNLNGNRLE---GPLPPSLVNCHHLEVLNVGNNQ-INDNFPNWLEILPELQVLILRSNRFWGPIGENT-TIVPFPSLRI 141 (334)
Q Consensus 67 ~L~L~~n~l~---~~~p~~l~~l~~L~~L~Ls~N~-l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~-~~~~l~~L~~ 141 (334)
.|+++++.-. ..+.--...+++|.+|||++|. ++......|.+++.|++|.++.|.. .+|..+ .+...|+|.+
T Consensus 290 ~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~--i~p~~~~~l~s~psl~y 367 (419)
T KOG2120|consen 290 QLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYD--IIPETLLELNSKPSLVY 367 (419)
T ss_pred hhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcC--CChHHeeeeccCcceEE
Confidence 5555554311 0111122456778888887763 3333334555777788888887763 344332 3466777888
Q ss_pred EEecCC
Q 019924 142 IDLSHN 147 (334)
Q Consensus 142 L~Ls~N 147 (334)
||+.++
T Consensus 368 Ldv~g~ 373 (419)
T KOG2120|consen 368 LDVFGC 373 (419)
T ss_pred EEeccc
Confidence 877654
No 57
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.79 E-value=2.7e-05 Score=66.31 Aligned_cols=108 Identities=18% Similarity=0.256 Sum_probs=63.8
Q ss_pred CEEeCCCCcCccccC-cCcc-CCCCccEEeCCCCcccc--CCCccccCCCCCCEEEccCCcCCcCCChhhhcCCCCCEEE
Q 019924 42 KVLDMRMNNFNGKIP-RKFV-KSCNLTSLNLNGNRLEG--PLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLI 117 (334)
Q Consensus 42 ~~L~Ls~N~l~~~~p-~~~~-~l~~L~~L~L~~n~l~~--~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ 117 (334)
+.|-+.+..|..... ..|+ ..+.++.+||.+|+|+. ++...+.+++.|++|+++.|++...+...-....+|+.|-
T Consensus 48 ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lV 127 (418)
T KOG2982|consen 48 ELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLV 127 (418)
T ss_pred hhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEE
Confidence 445555555542111 1122 35668888888888863 2344456778888888888887653322213456788888
Q ss_pred eecccCcccCCCCCCCCCCCCccEEEecCCccc
Q 019924 118 LRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFT 150 (334)
Q Consensus 118 L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~ 150 (334)
|.+..+.-....++ +..+|.++.|++|.|.+.
T Consensus 128 LNgT~L~w~~~~s~-l~~lP~vtelHmS~N~~r 159 (418)
T KOG2982|consen 128 LNGTGLSWTQSTSS-LDDLPKVTELHMSDNSLR 159 (418)
T ss_pred EcCCCCChhhhhhh-hhcchhhhhhhhccchhh
Confidence 87776643222222 356777788888887544
No 58
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.75 E-value=1.9e-05 Score=76.99 Aligned_cols=131 Identities=21% Similarity=0.227 Sum_probs=68.0
Q ss_pred CcccEEEcCCCCCCCCCC-----CCCCCCCeEECCCCCCCCEEeCCCCcCcc-ccCcCccCCCCccEEeCCCCccccCCC
Q 019924 7 ATLYYLDLSNNFLTNIEY-----FPPTNMTQLNFDSNLTHKVLDMRMNNFNG-KIPRKFVKSCNLTSLNLNGNRLEGPLP 80 (334)
Q Consensus 7 ~~L~~L~Ls~n~l~~~~~-----~~~~~L~~L~l~~n~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~L~L~~n~l~~~~p 80 (334)
.+|+.||+++...-.... ..+|+|+.| .+++-.+.. .......++++|..||+|+++++..
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL-----------~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-- 188 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSL-----------VISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-- 188 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceE-----------EecCceecchhHHHHhhccCccceeecCCCCccCc--
Confidence 356777777654432222 345555544 444433321 1122344566666777777666633
Q ss_pred ccccCCCCCCEEEccCCcCCc-CCChhhhcCCCCCEEEeecccCcccC------CCCCCCCCCCCccEEEecCCccccc
Q 019924 81 PSLVNCHHLEVLNVGNNQIND-NFPNWLEILPELQVLILRSNRFWGPI------GENTTIVPFPSLRIIDLSHNEFTGV 152 (334)
Q Consensus 81 ~~l~~l~~L~~L~Ls~N~l~~-~~~~~l~~l~~L~~L~L~~N~l~~~~------~~~~~~~~l~~L~~L~Ls~N~l~~~ 152 (334)
.+++.+++|+.|.+.+=.+.. ..-..+..+++|+.||+|..+..... -+.. ..+|+|+.||.|++.+.+.
T Consensus 189 ~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~--~~LpeLrfLDcSgTdi~~~ 265 (699)
T KOG3665|consen 189 SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECG--MVLPELRFLDCSGTDINEE 265 (699)
T ss_pred HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhc--ccCccccEEecCCcchhHH
Confidence 456666666666666544433 11123445667777777665542211 0111 2366777777776666543
No 59
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.69 E-value=1.8e-05 Score=77.15 Aligned_cols=129 Identities=17% Similarity=0.215 Sum_probs=80.0
Q ss_pred CCCCEEeCCCCcCcc-ccCcCcc-CCCCccEEeCCCCcccc-CCCccccCCCCCCEEEccCCcCCcCCChhhhcCCCCCE
Q 019924 39 LTHKVLDMRMNNFNG-KIPRKFV-KSCNLTSLNLNGNRLEG-PLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQV 115 (334)
Q Consensus 39 ~~L~~L~Ls~N~l~~-~~p~~~~-~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~ 115 (334)
.+|++||+++...-. .-|..++ -+++|+.|.+++-.+.. ..-....++++|..||+|+..++.. ..++.+++|+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence 678888888764431 2222232 47888888888876642 2233456678888889988888764 67788888888
Q ss_pred EEeecccCcccCCCCCCCCCCCCccEEEecCCcccccc--c---hhhHHhHHhhhhcCCc
Q 019924 116 LILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVL--L---TGYLDNFKAMMHGNNI 170 (334)
Q Consensus 116 L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~--~---~~~~~~l~~L~~~~~~ 170 (334)
|.+.+=.+.. ...-..+.++++|+.||+|........ . .++...|+.|+.++..
T Consensus 200 L~mrnLe~e~-~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcS 258 (699)
T KOG3665|consen 200 LSMRNLEFES-YQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCS 258 (699)
T ss_pred HhccCCCCCc-hhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecC
Confidence 8887766532 111123467888888888876654322 1 1222335555555553
No 60
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.67 E-value=3.2e-05 Score=64.66 Aligned_cols=94 Identities=18% Similarity=0.222 Sum_probs=66.4
Q ss_pred cCcCccCCCCccEEeCCCCccccCCCccccCCCCCCEEEccCC--cCCcCCChhhhcCCCCCEEEeecccCcccCCCCCC
Q 019924 55 IPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNN--QINDNFPNWLEILPELQVLILRSNRFWGPIGENTT 132 (334)
Q Consensus 55 ~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N--~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~ 132 (334)
+......+..|+.|++.+..++.. ..+..+++|+.|.++.| .+.+.++.....+++|++|++++|++.- +...-.
T Consensus 35 ~~gl~d~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~-lstl~p 111 (260)
T KOG2739|consen 35 LGGLTDEFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD-LSTLRP 111 (260)
T ss_pred cccccccccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc-ccccch
Confidence 445555566788888888877733 34677889999999999 5555555555567999999999999852 222123
Q ss_pred CCCCCCccEEEecCCcccc
Q 019924 133 IVPFPSLRIIDLSHNEFTG 151 (334)
Q Consensus 133 ~~~l~~L~~L~Ls~N~l~~ 151 (334)
+..+.+|..||+.+|..+.
T Consensus 112 l~~l~nL~~Ldl~n~~~~~ 130 (260)
T KOG2739|consen 112 LKELENLKSLDLFNCSVTN 130 (260)
T ss_pred hhhhcchhhhhcccCCccc
Confidence 3567788889998887765
No 61
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.49 E-value=0.00052 Score=62.23 Aligned_cols=32 Identities=16% Similarity=0.223 Sum_probs=16.4
Q ss_pred hheeEEEccCcccccCCchhhhCcCCCCeeeccCC
Q 019924 205 TIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHN 239 (334)
Q Consensus 205 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N 239 (334)
++|+.|++++|... ..|+.+. .+|+.|+++.|
T Consensus 156 sSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~n 187 (426)
T PRK15386 156 PSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHIE 187 (426)
T ss_pred CcccEEEecCCCcc-cCccccc--ccCcEEEeccc
Confidence 45666666665544 2333222 35566666554
No 62
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.31 E-value=0.00015 Score=60.76 Aligned_cols=100 Identities=26% Similarity=0.296 Sum_probs=61.2
Q ss_pred CEEeCCCCcCccccCcCccCCCCccEEeCCCC--ccccCCCccccCCCCCCEEEccCCcCCcCCChh---hhcCCCCCEE
Q 019924 42 KVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGN--RLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNW---LEILPELQVL 116 (334)
Q Consensus 42 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n--~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~---l~~l~~L~~L 116 (334)
+.|++.+..++.. ..|..+++|++|.++.| ++.+.++.-...+++|++|++++|++.. ++. +..+.+|..|
T Consensus 46 e~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~--lstl~pl~~l~nL~~L 121 (260)
T KOG2739|consen 46 ELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD--LSTLRPLKELENLKSL 121 (260)
T ss_pred hhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc--ccccchhhhhcchhhh
Confidence 4444555444422 34566778888888888 5655555555666888888888888764 222 3456677788
Q ss_pred EeecccCcccCC-CCCCCCCCCCccEEEec
Q 019924 117 ILRSNRFWGPIG-ENTTIVPFPSLRIIDLS 145 (334)
Q Consensus 117 ~L~~N~l~~~~~-~~~~~~~l~~L~~L~Ls 145 (334)
++.+|..+..-- ....+.-+++|++||-.
T Consensus 122 dl~n~~~~~l~dyre~vf~ll~~L~~LD~~ 151 (260)
T KOG2739|consen 122 DLFNCSVTNLDDYREKVFLLLPSLKYLDGC 151 (260)
T ss_pred hcccCCccccccHHHHHHHHhhhhcccccc
Confidence 888877654211 01123456777777643
No 63
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.25 E-value=0.0013 Score=49.95 Aligned_cols=101 Identities=17% Similarity=0.174 Sum_probs=52.1
Q ss_pred CCCCEEeCCCCcCccccCcCccCCCCccEEeCCCCccccCCCccccCCCCCCEEEccCCcCCcCCChhhhcCCCCCEEEe
Q 019924 39 LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLIL 118 (334)
Q Consensus 39 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L 118 (334)
.+|+.+.+.. .+.......|..+++|+.+.+..+ +.......|.++++|+.+.+.+ .+.......|..+++|+.+++
T Consensus 12 ~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~ 88 (129)
T PF13306_consen 12 SNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDI 88 (129)
T ss_dssp TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEE
T ss_pred CCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccccccccc
Confidence 3446666663 455455666777777888888765 5545556677777788888865 444444556667788888887
Q ss_pred ecccCcccCCCCCCCCCCCCccEEEecC
Q 019924 119 RSNRFWGPIGENTTIVPFPSLRIIDLSH 146 (334)
Q Consensus 119 ~~N~l~~~~~~~~~~~~l~~L~~L~Ls~ 146 (334)
..+ +....... +.+. +|+.+.+..
T Consensus 89 ~~~-~~~i~~~~--f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 89 PSN-ITEIGSSS--FSNC-NLKEINIPS 112 (129)
T ss_dssp TTT--BEEHTTT--TTT--T--EEE-TT
T ss_pred Ccc-ccEEchhh--hcCC-CceEEEECC
Confidence 655 33222222 3555 777777665
No 64
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.01 E-value=0.0014 Score=49.77 Aligned_cols=103 Identities=18% Similarity=0.229 Sum_probs=62.2
Q ss_pred CCCcccEEEcCCCCCCCCCCCCCCCCCeEECCCCCCCCEEeCCCCcCccccCcCccCCCCccEEeCCCCccccCCCcccc
Q 019924 5 GIATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLV 84 (334)
Q Consensus 5 ~l~~L~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~ 84 (334)
++++|+.+.+.. .+..+....+.+...| +.+.+..+ +.......|..+.+++.+.+.. .+.......|.
T Consensus 10 ~~~~l~~i~~~~-~~~~I~~~~F~~~~~l--------~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~ 78 (129)
T PF13306_consen 10 NCSNLESITFPN-TIKKIGENAFSNCTSL--------KSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFS 78 (129)
T ss_dssp T-TT--EEEETS-T--EE-TTTTTT-TT---------SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTT
T ss_pred CCCCCCEEEECC-CeeEeChhhccccccc--------cccccccc-ccccceeeeecccccccccccc-ccccccccccc
Confidence 456788888875 4665555555555444 88888875 6656667888888999999976 44435556788
Q ss_pred CCCCCCEEEccCCcCCcCCChhhhcCCCCCEEEeec
Q 019924 85 NCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRS 120 (334)
Q Consensus 85 ~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~ 120 (334)
.+++|+.+++..+ +.......|..+ +|+.+.+..
T Consensus 79 ~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 79 NCTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp T-TTECEEEETTT--BEEHTTTTTT--T--EEE-TT
T ss_pred ccccccccccCcc-ccEEchhhhcCC-CceEEEECC
Confidence 8999999999776 655566677777 899998875
No 65
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.98 E-value=1.8e-05 Score=66.69 Aligned_cols=84 Identities=30% Similarity=0.297 Sum_probs=35.3
Q ss_pred CccEEeCCCCccccCCCccccCCCCCCEEEccCCcCCcCCChhhhcCCCCCEEEeecccCcccCCCCCCCCCCCCccEEE
Q 019924 64 NLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIID 143 (334)
Q Consensus 64 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ 143 (334)
+.+.|++.+|.++.+ ....+++.|+.|.|+-|+|+.. ..+..|+.|++|+|..|.|.. +.+..-+.++++|+.|.
T Consensus 20 ~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~s-ldEL~YLknlpsLr~LW 94 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIES-LDELEYLKNLPSLRTLW 94 (388)
T ss_pred HhhhhcccCCCccHH--HHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhccccc-HHHHHHHhcCchhhhHh
Confidence 344444444444422 1223444455555555554442 123444455555555554421 11111123445555555
Q ss_pred ecCCccccc
Q 019924 144 LSHNEFTGV 152 (334)
Q Consensus 144 Ls~N~l~~~ 152 (334)
|..|.-.+.
T Consensus 95 L~ENPCc~~ 103 (388)
T KOG2123|consen 95 LDENPCCGE 103 (388)
T ss_pred hccCCcccc
Confidence 555544433
No 66
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.55 E-value=0.00017 Score=61.04 Aligned_cols=63 Identities=21% Similarity=0.189 Sum_probs=49.7
Q ss_pred CCCCCEEEccCCcCCcCCChhhhcCCCCCEEEeecccCcccCCCCCCCCCCCCccEEEecCCccccccc
Q 019924 86 CHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLL 154 (334)
Q Consensus 86 l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 154 (334)
+.+.+.|++-++.+.++ .....|+.|+.|.|+-|+|+..-+ +..+++|++|+|..|.|.+...
T Consensus 18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~p----l~rCtrLkElYLRkN~I~sldE 80 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLAP----LQRCTRLKELYLRKNCIESLDE 80 (388)
T ss_pred HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccchh----HHHHHHHHHHHHHhcccccHHH
Confidence 45678889999988773 456789999999999999864433 2678999999999999876533
No 67
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.46 E-value=0.0014 Score=33.07 Aligned_cols=22 Identities=32% Similarity=0.493 Sum_probs=16.8
Q ss_pred heeEEEccCcccccCCchhhhCc
Q 019924 206 IFMTIDLSSNKFQGGIPEVVGKL 228 (334)
Q Consensus 206 ~L~~L~Ls~N~l~~~~p~~l~~l 228 (334)
+|++|||++|+++ .+|..|+++
T Consensus 1 ~L~~Ldls~n~l~-~ip~~~~~l 22 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIPSSFSNL 22 (22)
T ss_dssp TESEEEETSSEES-EEGTTTTT-
T ss_pred CccEEECCCCcCE-eCChhhcCC
Confidence 4788999999998 777766653
No 68
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=96.29 E-value=1.5e-05 Score=74.29 Aligned_cols=38 Identities=32% Similarity=0.349 Sum_probs=29.1
Q ss_pred hheeEEEccCcccccCC----chhhhCcCCCCeeeccCCccC
Q 019924 205 TIFMTIDLSSNKFQGGI----PEVVGKLNLLKGLNISHNNLT 242 (334)
Q Consensus 205 ~~L~~L~Ls~N~l~~~~----p~~l~~l~~L~~L~Ls~N~l~ 242 (334)
..++.++++.|.|+..- .+.+..++.++.+.++.|++.
T Consensus 262 ~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 262 ETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT 303 (478)
T ss_pred hhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence 46688899999888543 444566778889999999887
No 69
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.28 E-value=0.0018 Score=32.66 Aligned_cols=19 Identities=37% Similarity=0.592 Sum_probs=9.4
Q ss_pred CCEEeCCCCcCccccCcCcc
Q 019924 41 HKVLDMRMNNFNGKIPRKFV 60 (334)
Q Consensus 41 L~~L~Ls~N~l~~~~p~~~~ 60 (334)
|++||+++|+++ .+|..|+
T Consensus 2 L~~Ldls~n~l~-~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSFS 20 (22)
T ss_dssp ESEEEETSSEES-EEGTTTT
T ss_pred ccEEECCCCcCE-eCChhhc
Confidence 355555555555 4444443
No 70
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=95.15 E-value=0.012 Score=27.48 Aligned_cols=14 Identities=64% Similarity=0.655 Sum_probs=5.9
Q ss_pred cccEEEcCCCCCCC
Q 019924 8 TLYYLDLSNNFLTN 21 (334)
Q Consensus 8 ~L~~L~Ls~n~l~~ 21 (334)
+|+.|++++|+++.
T Consensus 2 ~L~~L~l~~n~L~~ 15 (17)
T PF13504_consen 2 NLRTLDLSNNRLTS 15 (17)
T ss_dssp T-SEEEETSS--SS
T ss_pred ccCEEECCCCCCCC
Confidence 45555555555543
No 71
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=94.59 E-value=0.00053 Score=56.61 Aligned_cols=80 Identities=19% Similarity=0.216 Sum_probs=45.5
Q ss_pred CCEEeCCCCcCccccCcCccCCCCccEEeCCCCccccCCCccccCCCCCCEEEccCCcCCcCCChhhhcCCCCCEEEeec
Q 019924 41 HKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRS 120 (334)
Q Consensus 41 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~ 120 (334)
.+.||++.|++. .+-..|+.++.+..|+++.|++. ..|..+..+..+..+++..|..+. .|..++..++++++++..
T Consensus 44 ~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~~-~p~s~~k~~~~k~~e~k~ 120 (326)
T KOG0473|consen 44 VTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHSQ-QPKSQKKEPHPKKNEQKK 120 (326)
T ss_pred eeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchhh-CCccccccCCcchhhhcc
Confidence 355566666554 33445555555666666666665 455555555555556655555554 455555666666666555
Q ss_pred ccC
Q 019924 121 NRF 123 (334)
Q Consensus 121 N~l 123 (334)
|.+
T Consensus 121 ~~~ 123 (326)
T KOG0473|consen 121 TEF 123 (326)
T ss_pred Ccc
Confidence 554
No 72
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=92.99 E-value=0.097 Score=27.31 Aligned_cols=14 Identities=36% Similarity=0.634 Sum_probs=6.7
Q ss_pred CCCEEEccCCcCCc
Q 019924 88 HLEVLNVGNNQIND 101 (334)
Q Consensus 88 ~L~~L~Ls~N~l~~ 101 (334)
+|++|++++|++..
T Consensus 3 ~L~~L~L~~N~l~~ 16 (26)
T smart00369 3 NLRELDLSNNQLSS 16 (26)
T ss_pred CCCEEECCCCcCCc
Confidence 44444454444444
No 73
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=92.99 E-value=0.097 Score=27.31 Aligned_cols=14 Identities=36% Similarity=0.634 Sum_probs=6.7
Q ss_pred CCCEEEccCCcCCc
Q 019924 88 HLEVLNVGNNQIND 101 (334)
Q Consensus 88 ~L~~L~Ls~N~l~~ 101 (334)
+|++|++++|++..
T Consensus 3 ~L~~L~L~~N~l~~ 16 (26)
T smart00370 3 NLRELDLSNNQLSS 16 (26)
T ss_pred CCCEEECCCCcCCc
Confidence 44444454444444
No 74
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=92.93 E-value=0.0013 Score=54.29 Aligned_cols=74 Identities=16% Similarity=0.131 Sum_probs=60.9
Q ss_pred CCCCCCeEECCCC------------CCCCEEeCCCCcCccccCcCccCCCCccEEeCCCCccccCCCccccCCCCCCEEE
Q 019924 26 PPTNMTQLNFDSN------------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLN 93 (334)
Q Consensus 26 ~~~~L~~L~l~~n------------~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 93 (334)
.+...+.||++.| ..+..||++.|++. ..|..+..+..+..+++..|..+ ..|.++...+.+++++
T Consensus 40 ~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e 117 (326)
T KOG0473|consen 40 SFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNE 117 (326)
T ss_pred ccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhh
Confidence 3444555555555 34578999999998 88999999999999999999988 8899999999999999
Q ss_pred ccCCcCCc
Q 019924 94 VGNNQIND 101 (334)
Q Consensus 94 Ls~N~l~~ 101 (334)
+..|.+..
T Consensus 118 ~k~~~~~~ 125 (326)
T KOG0473|consen 118 QKKTEFFR 125 (326)
T ss_pred hccCcchH
Confidence 99998643
No 75
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=92.93 E-value=0.00072 Score=63.26 Aligned_cols=37 Identities=16% Similarity=0.094 Sum_probs=19.6
Q ss_pred hhheeEEEccCcccccCCc----hhhhCcCCCCeeeccCCc
Q 019924 204 LTIFMTIDLSSNKFQGGIP----EVVGKLNLLKGLNISHNN 240 (334)
Q Consensus 204 l~~L~~L~Ls~N~l~~~~p----~~l~~l~~L~~L~Ls~N~ 240 (334)
++.++++.++.|.+..... ..+.....+..+-+.++.
T Consensus 289 ~~~l~~l~l~~n~l~~~~~~~~~~~l~~~~~~~~~~l~~~~ 329 (478)
T KOG4308|consen 289 CRQLEELSLSNNPLTDYGVELLLEALERKTPLLHLVLGGTG 329 (478)
T ss_pred hHHHHHhhcccCccccHHHHHHHHHhhhcccchhhhccccC
Confidence 4567778888887764321 222333444455555443
No 76
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=92.50 E-value=0.11 Score=27.15 Aligned_cols=16 Identities=38% Similarity=0.497 Sum_probs=10.1
Q ss_pred CCccEEeCCCCccccC
Q 019924 63 CNLTSLNLNGNRLEGP 78 (334)
Q Consensus 63 ~~L~~L~L~~n~l~~~ 78 (334)
++|++|+|++|+|+..
T Consensus 2 ~~L~~L~L~~N~l~~l 17 (26)
T smart00370 2 PNLRELDLSNNQLSSL 17 (26)
T ss_pred CCCCEEECCCCcCCcC
Confidence 4566677777766633
No 77
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=92.50 E-value=0.11 Score=27.15 Aligned_cols=16 Identities=38% Similarity=0.497 Sum_probs=10.1
Q ss_pred CCccEEeCCCCccccC
Q 019924 63 CNLTSLNLNGNRLEGP 78 (334)
Q Consensus 63 ~~L~~L~L~~n~l~~~ 78 (334)
++|++|+|++|+|+..
T Consensus 2 ~~L~~L~L~~N~l~~l 17 (26)
T smart00369 2 PNLRELDLSNNQLSSL 17 (26)
T ss_pred CCCCEEECCCCcCCcC
Confidence 4566677777766633
No 78
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=91.97 E-value=0.03 Score=28.67 Aligned_cols=21 Identities=24% Similarity=0.286 Sum_probs=12.2
Q ss_pred hheeEEEccCcccccCCchhh
Q 019924 205 TIFMTIDLSSNKFQGGIPEVV 225 (334)
Q Consensus 205 ~~L~~L~Ls~N~l~~~~p~~l 225 (334)
++|++|+|++|+|++..+..+
T Consensus 2 ~~L~~L~l~~n~i~~~g~~~l 22 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEGASAL 22 (24)
T ss_dssp TT-SEEE-TSSBEHHHHHHHH
T ss_pred CCCCEEEccCCcCCHHHHHHh
Confidence 467777888877775544443
No 79
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.34 E-value=0.057 Score=43.93 Aligned_cols=81 Identities=16% Similarity=0.131 Sum_probs=34.7
Q ss_pred CccEEeCCCCccccCCCccccCCCCCCEEEccCCcCCc-CCChhhh-cCCCCCEEEeeccc-CcccCCCCCCCCCCCCcc
Q 019924 64 NLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQIND-NFPNWLE-ILPELQVLILRSNR-FWGPIGENTTIVPFPSLR 140 (334)
Q Consensus 64 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~-~~~~~l~-~l~~L~~L~L~~N~-l~~~~~~~~~~~~l~~L~ 140 (334)
.++.+|-++..|..+--+.+.++++++.|.+.++.--+ ..-+.++ -.++|+.|++++|. |+..--. .+..+++|+
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~--~L~~lknLr 179 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLA--CLLKLKNLR 179 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHH--HHHHhhhhH
Confidence 35555555555544333344445555555555443211 0000111 23556666666553 3221111 123455555
Q ss_pred EEEecC
Q 019924 141 IIDLSH 146 (334)
Q Consensus 141 ~L~Ls~ 146 (334)
.|.+.+
T Consensus 180 ~L~l~~ 185 (221)
T KOG3864|consen 180 RLHLYD 185 (221)
T ss_pred HHHhcC
Confidence 555443
No 80
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=88.29 E-value=0.43 Score=24.99 Aligned_cols=18 Identities=22% Similarity=0.388 Sum_probs=10.6
Q ss_pred CCCCeeeccCCccCCCCC
Q 019924 229 NLLKGLNISHNNLTGLCG 246 (334)
Q Consensus 229 ~~L~~L~Ls~N~l~~l~~ 246 (334)
++|+.|++++|+|+.+.+
T Consensus 2 ~~L~~L~L~~NkI~~IEn 19 (26)
T smart00365 2 TNLEELDLSQNKIKKIEN 19 (26)
T ss_pred CccCEEECCCCccceecC
Confidence 456666666666655444
No 81
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=87.79 E-value=4.1 Score=37.77 Aligned_cols=41 Identities=20% Similarity=0.227 Sum_probs=22.9
Q ss_pred eeEEEccCcccccCCch---hhhCcCCCCeeeccCCccCCCCCC
Q 019924 207 FMTIDLSSNKFQGGIPE---VVGKLNLLKGLNISHNNLTGLCGF 247 (334)
Q Consensus 207 L~~L~Ls~N~l~~~~p~---~l~~l~~L~~L~Ls~N~l~~l~~~ 247 (334)
+..+.++.|.+....-. .+..-+.+..|++++|....-.+.
T Consensus 415 l~el~ls~~~lka~l~s~in~l~stqtl~kldisgn~mgd~gap 458 (553)
T KOG4242|consen 415 LAELSLSPGPLKAGLESAINKLLSTQTLAKLDISGNGMGDGGAP 458 (553)
T ss_pred ccCcccCCCcccccHHHHHHhhccCcccccccccCCCcccCCCC
Confidence 55666777766532221 223345677777777776544433
No 82
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=85.98 E-value=0.16 Score=47.77 Aligned_cols=91 Identities=26% Similarity=0.187 Sum_probs=46.2
Q ss_pred CccCCCCccEEeCCCC-ccccCC----CccccCCCCCCEEEccCCc-CCcCCChhhh-cCCCCCEEEeeccc-CcccCCC
Q 019924 58 KFVKSCNLTSLNLNGN-RLEGPL----PPSLVNCHHLEVLNVGNNQ-INDNFPNWLE-ILPELQVLILRSNR-FWGPIGE 129 (334)
Q Consensus 58 ~~~~l~~L~~L~L~~n-~l~~~~----p~~l~~l~~L~~L~Ls~N~-l~~~~~~~l~-~l~~L~~L~L~~N~-l~~~~~~ 129 (334)
....+++|+.|+++++ ...... ......+.+|+.|+++... +++..-..+. .+++|++|.+.++. ++...-.
T Consensus 209 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~ 288 (482)
T KOG1947|consen 209 LALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLV 288 (482)
T ss_pred HHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHH
Confidence 3445667777777652 111011 1233445667777777766 4443333333 36677777765554 3222111
Q ss_pred CCCCCCCCCccEEEecCCcc
Q 019924 130 NTTIVPFPSLRIIDLSHNEF 149 (334)
Q Consensus 130 ~~~~~~l~~L~~L~Ls~N~l 149 (334)
.+ ...++.|+.|+++.+..
T Consensus 289 ~i-~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 289 SI-AERCPSLRELDLSGCHG 307 (482)
T ss_pred HH-HHhcCcccEEeeecCcc
Confidence 11 13456677777776654
No 83
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=85.72 E-value=0.36 Score=45.37 Aligned_cols=85 Identities=22% Similarity=0.174 Sum_probs=52.2
Q ss_pred CCCCEEeCCCC--cCcc---ccCcCccCCCCccEEeCCCCc-cccCCCcccc-CCCCCCEEEccCCc-CCcCCC-hhhhc
Q 019924 39 LTHKVLDMRMN--NFNG---KIPRKFVKSCNLTSLNLNGNR-LEGPLPPSLV-NCHHLEVLNVGNNQ-INDNFP-NWLEI 109 (334)
Q Consensus 39 ~~L~~L~Ls~N--~l~~---~~p~~~~~l~~L~~L~L~~n~-l~~~~p~~l~-~l~~L~~L~Ls~N~-l~~~~~-~~l~~ 109 (334)
+.|+.|+++++ .+.. ........+.+|+.|+++++. ++...-..+. .+++|++|.+.++. +++..- .....
T Consensus 214 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~ 293 (482)
T KOG1947|consen 214 PNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAER 293 (482)
T ss_pred chhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHh
Confidence 55677777652 1110 111234456789999999887 5533222232 37899999977776 444322 23346
Q ss_pred CCCCCEEEeecccC
Q 019924 110 LPELQVLILRSNRF 123 (334)
Q Consensus 110 l~~L~~L~L~~N~l 123 (334)
++.|++|+++.+..
T Consensus 294 ~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 294 CPSLRELDLSGCHG 307 (482)
T ss_pred cCcccEEeeecCcc
Confidence 78899999998765
No 84
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=85.50 E-value=0.57 Score=24.48 Aligned_cols=17 Identities=53% Similarity=0.591 Sum_probs=11.3
Q ss_pred CCCeeeccCCccCCCCC
Q 019924 230 LLKGLNISHNNLTGLCG 246 (334)
Q Consensus 230 ~L~~L~Ls~N~l~~l~~ 246 (334)
+|+.|++++|+++.++.
T Consensus 3 ~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLTSLPE 19 (26)
T ss_pred ccceeecCCCccccCcc
Confidence 56677777777766654
No 85
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=84.98 E-value=0.33 Score=43.93 Aligned_cols=109 Identities=21% Similarity=0.168 Sum_probs=62.4
Q ss_pred CCCCEEeCCCCc-CccccCcCc-cCCCCccEEeCCCCccccC--CCccccCCCCCCEEEccCCcCC-cCC----Chhhhc
Q 019924 39 LTHKVLDMRMNN-FNGKIPRKF-VKSCNLTSLNLNGNRLEGP--LPPSLVNCHHLEVLNVGNNQIN-DNF----PNWLEI 109 (334)
Q Consensus 39 ~~L~~L~Ls~N~-l~~~~p~~~-~~l~~L~~L~L~~n~l~~~--~p~~l~~l~~L~~L~Ls~N~l~-~~~----~~~l~~ 109 (334)
.+|++|-++.++ ++..--..+ .+..+|+.+++..+..... +...-.+++.|+.|.++++... +.. ...-..
T Consensus 320 ~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~ 399 (483)
T KOG4341|consen 320 HNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCS 399 (483)
T ss_pred CceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhcccc
Confidence 455555555554 221111111 2456788888888765411 2223356788999999987652 210 111235
Q ss_pred CCCCCEEEeecccCccc-CCCCCCCCCCCCccEEEecCCcc
Q 019924 110 LPELQVLILRSNRFWGP-IGENTTIVPFPSLRIIDLSHNEF 149 (334)
Q Consensus 110 l~~L~~L~L~~N~l~~~-~~~~~~~~~l~~L~~L~Ls~N~l 149 (334)
+..|..+.|++++.... ..+ .+...++|+.+++-.++-
T Consensus 400 ~~~l~~lEL~n~p~i~d~~Le--~l~~c~~Leri~l~~~q~ 438 (483)
T KOG4341|consen 400 LEGLEVLELDNCPLITDATLE--HLSICRNLERIELIDCQD 438 (483)
T ss_pred ccccceeeecCCCCchHHHHH--HHhhCcccceeeeechhh
Confidence 66788899988875321 112 235677888888877753
No 86
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=82.43 E-value=1.1 Score=23.78 Aligned_cols=12 Identities=25% Similarity=0.418 Sum_probs=5.7
Q ss_pred CCEEeCCCCcCc
Q 019924 41 HKVLDMRMNNFN 52 (334)
Q Consensus 41 L~~L~Ls~N~l~ 52 (334)
|++|||++|.++
T Consensus 4 L~~LdL~~N~i~ 15 (28)
T smart00368 4 LRELDLSNNKLG 15 (28)
T ss_pred cCEEECCCCCCC
Confidence 344455555443
No 87
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.78 E-value=0.56 Score=38.33 Aligned_cols=89 Identities=19% Similarity=0.140 Sum_probs=57.0
Q ss_pred CCccccCCCCCCEEEccCCcCCcCCChhhhcCCCCCEEEeecccCcccCCCCCCCCCCCCccEEEecCCc-cccccchhh
Q 019924 79 LPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNE-FTGVLLTGY 157 (334)
Q Consensus 79 ~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~ 157 (334)
.|.....-..++.+|.++..|....-+.+..++.++.|.+.+++--+...-..--...++|+.|+++.|. |++. ...+
T Consensus 93 lp~~~~~~~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~-GL~~ 171 (221)
T KOG3864|consen 93 LPGPNADNVKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDG-GLAC 171 (221)
T ss_pred CCCCCCCcceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechh-HHHH
Confidence 4443344457899999999998877777888899999999888632211100001246899999999875 5533 2234
Q ss_pred HHhHHhhhhcC
Q 019924 158 LDNFKAMMHGN 168 (334)
Q Consensus 158 ~~~l~~L~~~~ 168 (334)
+..+++|..+.
T Consensus 172 L~~lknLr~L~ 182 (221)
T KOG3864|consen 172 LLKLKNLRRLH 182 (221)
T ss_pred HHHhhhhHHHH
Confidence 55555554443
No 88
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=79.08 E-value=1.3 Score=49.48 Aligned_cols=37 Identities=27% Similarity=0.394 Sum_probs=33.3
Q ss_pred EccCcccccCCchhhhCcCCCCeeeccCCccCCCCCC
Q 019924 211 DLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGLCGF 247 (334)
Q Consensus 211 ~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~l~~~ 247 (334)
||++|+|+...+..|..+++|+.|+|++|++.+-|..
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~CDC~L 37 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFECDCGL 37 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCcccccccc
Confidence 6899999977778899999999999999999998875
No 89
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=73.38 E-value=0.86 Score=35.21 Aligned_cols=10 Identities=20% Similarity=0.541 Sum_probs=4.9
Q ss_pred hHHHHHhhhc
Q 019924 308 WLVRMIEKYQ 317 (334)
Q Consensus 308 w~~~~~~~~~ 317 (334)
|+..+..|-.
T Consensus 101 ~w~~l~Gk~~ 110 (154)
T PF04478_consen 101 WWYSLLGKKI 110 (154)
T ss_pred HHHHHhCCcc
Confidence 4445555544
No 90
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=71.61 E-value=2.3 Score=38.79 Aligned_cols=119 Identities=20% Similarity=0.097 Sum_probs=76.6
Q ss_pred CCCcccEEEcCCCCCCCCCC-----CCCCCCCeEECCCC---------------CCCCEEeCCCCcCcc--ccCcCccCC
Q 019924 5 GIATLYYLDLSNNFLTNIEY-----FPPTNMTQLNFDSN---------------LTHKVLDMRMNNFNG--KIPRKFVKS 62 (334)
Q Consensus 5 ~l~~L~~L~Ls~n~l~~~~~-----~~~~~L~~L~l~~n---------------~~L~~L~Ls~N~l~~--~~p~~~~~l 62 (334)
++..|+.|+.+++.-.+-.+ ....+|+.|.++.+ +.|+.+++....... .+...=.++
T Consensus 292 ~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C 371 (483)
T KOG4341|consen 292 GCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNC 371 (483)
T ss_pred hhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCC
Confidence 56677778877775422211 45577777777766 567778877765441 122223457
Q ss_pred CCccEEeCCCCccccCC-----CccccCCCCCCEEEccCCcCC-cCCChhhhcCCCCCEEEeecccC
Q 019924 63 CNLTSLNLNGNRLEGPL-----PPSLVNCHHLEVLNVGNNQIN-DNFPNWLEILPELQVLILRSNRF 123 (334)
Q Consensus 63 ~~L~~L~L~~n~l~~~~-----p~~l~~l~~L~~L~Ls~N~l~-~~~~~~l~~l~~L~~L~L~~N~l 123 (334)
+.|+.|.++++...... ...-..+..|+.+.++++... +..-..+..+++|+.+++..++-
T Consensus 372 ~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~ 438 (483)
T KOG4341|consen 372 PRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQD 438 (483)
T ss_pred chhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhh
Confidence 88999999988653221 222345677899999988753 22334556788999999988763
No 91
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=66.50 E-value=4.9 Score=38.03 Aligned_cols=37 Identities=30% Similarity=0.266 Sum_probs=23.2
Q ss_pred hhheeEEEccCc--ccccCCchhhhC--cCCCCeeeccCCccC
Q 019924 204 LTIFMTIDLSSN--KFQGGIPEVVGK--LNLLKGLNISHNNLT 242 (334)
Q Consensus 204 l~~L~~L~Ls~N--~l~~~~p~~l~~--l~~L~~L~Ls~N~l~ 242 (334)
.++|..|+||+| .+.. ..++.+ ...|++|-+.+|++.
T Consensus 243 apklk~L~LS~N~~~~~~--~~el~K~k~l~Leel~l~GNPlc 283 (585)
T KOG3763|consen 243 APKLKTLDLSHNHSKISS--ESELDKLKGLPLEELVLEGNPLC 283 (585)
T ss_pred cchhheeecccchhhhcc--hhhhhhhcCCCHHHeeecCCccc
Confidence 567788888888 3331 122332 245777888888876
No 92
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=58.04 E-value=5.5 Score=37.72 Aligned_cols=66 Identities=27% Similarity=0.336 Sum_probs=38.0
Q ss_pred CCCcccEEEcCCCCCCCCCCCCCCCCCeEECCCCCCCCEEeCCCC--cCccccCcCccC--CCCccEEeCCCCccccC
Q 019924 5 GIATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMN--NFNGKIPRKFVK--SCNLTSLNLNGNRLEGP 78 (334)
Q Consensus 5 ~l~~L~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n~~L~~L~Ls~N--~l~~~~p~~~~~--l~~L~~L~L~~n~l~~~ 78 (334)
+.+.+..++|++|++..+.. ++.|.. .-+.|+.|+|++| .+.. ..++.+ ...|++|-+.+|.+...
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~--~sslsq----~apklk~L~LS~N~~~~~~--~~el~K~k~l~Leel~l~GNPlc~t 285 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDA--LSSLSQ----IAPKLKTLDLSHNHSKISS--ESELDKLKGLPLEELVLEGNPLCTT 285 (585)
T ss_pred CCcceeeeecccchhhchhh--hhHHHH----hcchhheeecccchhhhcc--hhhhhhhcCCCHHHeeecCCccccc
Confidence 45677777788887765433 111100 0155677888888 3331 122222 23588999999998643
No 93
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=57.96 E-value=2.9 Score=24.38 Aligned_cols=8 Identities=13% Similarity=-0.027 Sum_probs=3.0
Q ss_pred EEEEeeee
Q 019924 281 FAKMGYGS 288 (334)
Q Consensus 281 ~~~~~~~~ 288 (334)
.+++|++.
T Consensus 12 aIa~~VvV 19 (40)
T PF08693_consen 12 AIAVGVVV 19 (40)
T ss_pred EEEEEEEe
Confidence 33333333
No 94
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=47.31 E-value=13 Score=19.04 Aligned_cols=11 Identities=45% Similarity=0.419 Sum_probs=5.1
Q ss_pred CcccEEEcCCC
Q 019924 7 ATLYYLDLSNN 17 (334)
Q Consensus 7 ~~L~~L~Ls~n 17 (334)
++|+.|++++|
T Consensus 2 ~~L~~L~l~~C 12 (26)
T smart00367 2 PNLRELDLSGC 12 (26)
T ss_pred CCCCEeCCCCC
Confidence 34444444444
No 95
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=44.24 E-value=16 Score=41.57 Aligned_cols=33 Identities=12% Similarity=0.188 Sum_probs=27.5
Q ss_pred eCCCCccccCCCccccCCCCCCEEEccCCcCCc
Q 019924 69 NLNGNRLEGPLPPSLVNCHHLEVLNVGNNQIND 101 (334)
Q Consensus 69 ~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 101 (334)
||++|+|+...+..|..+++|+.|+|++|.+.-
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~C 33 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFEC 33 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCcccc
Confidence 588999987777788888999999999998754
No 96
>PF02208 Sorb: Sorbin homologous domain; InterPro: IPR003127 Sorbin is an active peptide present in the digestive tract, where it has pro-absorptive and anti-secretory effects in different parts of the intestine, including the ability to decrease VIP (vasoactive intestinal peptide) and cholera toxin-induced secretion. It is expressed in some intestinal and pancreatic endocrine tumours in humans []. Sorbin-homology domains are found in adaptor proteins such as vinexin, CAP/ponsin and argBP2, which regulate various cellular functions, including cell adhesion, cytoskeletal organisation, and growth factor signalling []. In addition to the sorbin domain, these proteins contain three SH3 (src homology 3) domains. The sorbin homology domain mediates the interaction of vinexin and CAP with flotillin, which is crucial for the localisation of SH3-binding proteins to the lipid raft, a region of the plasma membrane rich in cholesterol and sphingolipids that acts to concentrate certain signalling molecules. The sorbin homology domain of adaptor proteins may mediate interactions with the lipid raft that are crucial to intracellular communication [].
Probab=32.78 E-value=25 Score=20.97 Aligned_cols=15 Identities=13% Similarity=0.410 Sum_probs=12.2
Q ss_pred CcchhHHHHHhhhcc
Q 019924 304 GKPRWLVRMIEKYQS 318 (334)
Q Consensus 304 ~~~~w~~~~~~~~~~ 318 (334)
+.+.||..|+++.++
T Consensus 24 ~~kDWYktMFkqIHk 38 (47)
T PF02208_consen 24 RPKDWYKTMFKQIHK 38 (47)
T ss_pred chhHHHHHHHHHHHh
Confidence 567899999988764
No 97
>smart00459 Sorb Sorbin homologous domain. First found in the peptide hormone sorbin and later in the ponsin/ArgBP2/vinexin family of proteins.
Probab=32.22 E-value=26 Score=21.38 Aligned_cols=17 Identities=12% Similarity=0.344 Sum_probs=12.6
Q ss_pred CcchhHHHHHhhhcccE
Q 019924 304 GKPRWLVRMIEKYQSNK 320 (334)
Q Consensus 304 ~~~~w~~~~~~~~~~~~ 320 (334)
+-..||.+|+++.++..
T Consensus 27 ~~~dWYk~MfkqiHk~~ 43 (50)
T smart00459 27 RPKDWYRTMFKQIHRKG 43 (50)
T ss_pred cHHHHHHHHHHHHHccC
Confidence 33459999999887653
No 98
>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains. They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].
Probab=26.01 E-value=13 Score=30.57 Aligned_cols=17 Identities=12% Similarity=0.028 Sum_probs=7.8
Q ss_pred EEEEeeeeeeeeeeeee
Q 019924 281 FAKMGYGSGLVIGLSVG 297 (334)
Q Consensus 281 ~~~~~~~~~~~~~~~~~ 297 (334)
-+++|+.+|++.+++++
T Consensus 38 ~I~iaiVAG~~tVILVI 54 (221)
T PF08374_consen 38 KIMIAIVAGIMTVILVI 54 (221)
T ss_pred eeeeeeecchhhhHHHH
Confidence 44455555544433333
No 99
>PF13908 Shisa: Wnt and FGF inhibitory regulator
Probab=24.87 E-value=28 Score=28.08 Aligned_cols=7 Identities=29% Similarity=0.648 Sum_probs=3.0
Q ss_pred CCCCCCC
Q 019924 252 SCNIDEA 258 (334)
Q Consensus 252 ~c~~~~~ 258 (334)
.|.....
T Consensus 51 ~C~~~~~ 57 (179)
T PF13908_consen 51 SCDNYDT 57 (179)
T ss_pred ccccccc
Confidence 3444433
No 100
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=24.15 E-value=67 Score=30.23 Aligned_cols=93 Identities=19% Similarity=0.114 Sum_probs=52.5
Q ss_pred CcccEEEcCCCCCCCCCCCCCCC-CCeEECCCC----------------CCCCEEeCCCCcCccccCcCccCC---CCcc
Q 019924 7 ATLYYLDLSNNFLTNIEYFPPTN-MTQLNFDSN----------------LTHKVLDMRMNNFNGKIPRKFVKS---CNLT 66 (334)
Q Consensus 7 ~~L~~L~Ls~n~l~~~~~~~~~~-L~~L~l~~n----------------~~L~~L~Ls~N~l~~~~p~~~~~l---~~L~ 66 (334)
+.++++|++.|.+....+..+.. ---+.++.| ..+++++++.|.....+|.....+ ..++
T Consensus 165 pr~r~~dls~npi~dkvpihl~~p~~pl~lr~c~lsskfis~l~~qsg~~~lteldls~n~~Kddip~~~n~~a~~~vl~ 244 (553)
T KOG4242|consen 165 PRARQHDLSPNPIGDKVPIHLPQPGNPLSLRVCELSSKFISKLLIQSGRLWLTELDLSTNGGKDDIPRTLNKKAGTLVLF 244 (553)
T ss_pred chhhhhccCCCcccccCCccccCCCCccchhhhhhhhhHHHHhhhhhccccccccccccCCCCccchhHHHHhhhhhhhh
Confidence 45678888888887665511110 001333333 456788888887776666554332 2466
Q ss_pred EEeCCCCccccC---CCccccCCCCCCEEEccCCcC
Q 019924 67 SLNLNGNRLEGP---LPPSLVNCHHLEVLNVGNNQI 99 (334)
Q Consensus 67 ~L~L~~n~l~~~---~p~~l~~l~~L~~L~Ls~N~l 99 (334)
.++.+...+.-. -+-..+.-+++...+++.|..
T Consensus 245 ~ld~s~tgirlD~l~~~l~~g~~tkl~~~kls~ng~ 280 (553)
T KOG4242|consen 245 KLDRSTTGIRLDLLTSPLAAGRTTKLTFGKLSRNGT 280 (553)
T ss_pred cccccccccchhhcccccccccccccchhhhccCCC
Confidence 666666655411 222333446777777777654
No 101
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=22.94 E-value=28 Score=26.10 Aligned_cols=14 Identities=21% Similarity=0.686 Sum_probs=0.0
Q ss_pred eeeeeeeeeeeeec
Q 019924 288 SGLVIGLSVGYMVF 301 (334)
Q Consensus 288 ~~~~~~~~~~~~~~ 301 (334)
+|++++.+++++++
T Consensus 3 ag~a~~~~lgYciY 16 (121)
T PF02064_consen 3 AGVAAAAFLGYCIY 16 (121)
T ss_dssp --------------
T ss_pred HHHHHHHHHHHHhh
Confidence 34445556665553
No 102
>PF02404 SCF: Stem cell factor; InterPro: IPR003452 Stem cell factor (SCF) is a homodimer involved in hematopoiesis. SCF binds to and activates the SCF receptor (SCFR), a receptor tyrosine kinase. SCF stimulates the proliferation of mast cells and is able to augment the proliferation of both myeloid and lymphoid hematopoietic progenitors in bone marrow culture. It also mediates cell-cell adhesion and acts synergistically with other cytokines. SCF is a type I membrane protein, but is also found in a secretable, soluble form. The crystal structure of human SCF has been resolved and a potential receptor-binding site identified [].; GO: 0005173 stem cell factor receptor binding, 0007155 cell adhesion, 0016020 membrane; PDB: 1EXZ_A 1SCF_D 2E9W_C 2O26_A 2O27_A.
Probab=22.55 E-value=29 Score=29.54 Aligned_cols=27 Identities=22% Similarity=0.391 Sum_probs=0.0
Q ss_pred ccceEEEEEeeeeeeeeeeeeeeeecc
Q 019924 276 WFDWKFAKMGYGSGLVIGLSVGYMVFG 302 (334)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (334)
..-|..+++...+.+|+|+++|+++|.
T Consensus 212 slq~~~iAL~sl~SLVIGFvlG~l~WK 238 (273)
T PF02404_consen 212 SLQWPAIALPSLFSLVIGFVLGALYWK 238 (273)
T ss_dssp ---------------------------
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344666666666677888888877654
No 103
>PF01299 Lamp: Lysosome-associated membrane glycoprotein (Lamp); InterPro: IPR002000 Lysosome-associated membrane glycoproteins (lamp) [] are integral membrane proteins, specific to lysosomes, and whose exact biological function is not yet clear. Structurally, the lamp proteins consist of two internally homologous lysosome-luminal domains separated by a proline-rich hinge region; at the C-terminal extremity there is a transmembrane region (TM) followed by a very short cytoplasmic tail (C). In each of the duplicated domains, there are two conserved disulphide bonds. This structure is schematically represented in the figure below. +-----+ +-----+ +-----+ +-----+ | | | | | | | | xCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxxxCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxx +--------------------------++Hinge++--------------------------++TM++C+ In mammals, there are two closely related types of lamp: lamp-1 and lamp-2, which form major components of the lysosome membrane. In chicken lamp-1 is known as LEP100. Also included in this entry is the macrophage protein CD68 (or macrosialin) [] is a heavily glycosylated integral membrane protein whose structure consists of a mucin-like domain followed by a proline-rich hinge; a single lamp-like domain; a transmembrane region and a short cytoplasmic tail. Similar to CD68, mammalian lamp-3, which is expressed in lymphoid organs, dendritic cells and in lung, contains all the C-terminal regions but lacks the N-terminal lamp-like region []. In a lamp-family protein from nematodes [] only the part C-terminal to the hinge is conserved. ; GO: 0016020 membrane
Probab=21.55 E-value=3.6 Score=36.50 Aligned_cols=20 Identities=15% Similarity=0.167 Sum_probs=9.4
Q ss_pred eeeeeeeeeeeccCCcchhH
Q 019924 290 LVIGLSVGYMVFGTGKPRWL 309 (334)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~w~ 309 (334)
+++.+++++++.|+|.+++|
T Consensus 284 lvlivLiaYli~Rrr~~~gY 303 (306)
T PF01299_consen 284 LVLIVLIAYLIGRRRSRAGY 303 (306)
T ss_pred HHHHHHHhheeEeccccccc
Confidence 33334444555554554444
No 104
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=20.23 E-value=34 Score=32.02 Aligned_cols=9 Identities=11% Similarity=-0.163 Sum_probs=0.0
Q ss_pred cCCcchhHH
Q 019924 302 GTGKPRWLV 310 (334)
Q Consensus 302 ~~~~~~w~~ 310 (334)
++++|+|+-
T Consensus 378 ~rrrR~~~~ 386 (439)
T PF02480_consen 378 CRRRRRQRD 386 (439)
T ss_dssp ---------
T ss_pred ehhcccccc
Confidence 334444443
Done!