Query 019924
Match_columns 334
No_of_seqs 502 out of 2868
Neff 10.0
Searched_HMMs 29240
Date Mon Mar 25 09:07:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019924.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019924hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 2.3E-30 8E-35 255.5 15.2 150 6-157 393-558 (768)
2 1ogq_A PGIP-2, polygalacturona 100.0 3.4E-29 1.2E-33 221.7 9.5 213 7-243 50-282 (313)
3 3rgz_A Protein brassinosteroid 100.0 5E-28 1.7E-32 238.8 16.0 159 8-169 369-545 (768)
4 1ozn_A Reticulon 4 receptor; N 99.9 1.6E-26 5.6E-31 201.7 19.2 216 10-247 14-243 (285)
5 2z66_A Variable lymphocyte rec 99.9 6E-27 2.1E-31 206.6 15.7 218 7-247 28-266 (306)
6 3v47_A TOLL-like receptor 5B a 99.9 7.5E-27 2.6E-31 217.1 16.3 150 7-156 30-231 (455)
7 2id5_A Lingo-1, leucine rich r 99.9 7.1E-27 2.4E-31 218.6 15.6 239 5-246 54-337 (477)
8 3v47_A TOLL-like receptor 5B a 99.9 1.9E-26 6.6E-31 214.3 17.5 106 4-109 51-176 (455)
9 2o6q_A Variable lymphocyte rec 99.9 2.5E-25 8.7E-30 192.7 21.7 193 8-246 17-222 (270)
10 2id5_A Lingo-1, leucine rich r 99.9 3.1E-26 1.1E-30 214.2 15.5 235 4-241 77-355 (477)
11 1ziw_A TOLL-like receptor 3; i 99.9 1.2E-25 4.1E-30 219.2 19.4 237 5-244 327-599 (680)
12 3t6q_A CD180 antigen; protein- 99.9 6.5E-26 2.2E-30 218.2 17.1 234 8-243 255-514 (606)
13 1p9a_G Platelet glycoprotein I 99.9 4.7E-25 1.6E-29 192.9 20.8 194 4-247 7-213 (290)
14 2z62_A TOLL-like receptor 4, v 99.9 2E-25 6.9E-30 193.9 18.2 208 8-246 29-241 (276)
15 2z80_A TOLL-like receptor 2, v 99.9 1.4E-25 4.7E-30 201.9 16.8 235 7-245 52-317 (353)
16 3zyi_A Leucine-rich repeat-con 99.9 8.3E-26 2.8E-30 210.0 15.1 217 7-247 75-308 (452)
17 4fcg_A Uncharacterized protein 99.9 1.1E-25 3.8E-30 200.4 14.9 147 5-156 79-248 (328)
18 3j0a_A TOLL-like receptor 5; m 99.9 1.3E-26 4.5E-31 230.9 9.6 110 40-151 267-376 (844)
19 1ozn_A Reticulon 4 receptor; N 99.9 1.2E-24 4E-29 189.9 20.3 185 39-245 32-217 (285)
20 4fcg_A Uncharacterized protein 99.9 8.6E-26 2.9E-30 201.1 12.9 189 6-242 103-314 (328)
21 3zyj_A Leucine-rich repeat-con 99.9 1.4E-25 4.9E-30 207.7 14.5 226 7-247 64-297 (440)
22 3t6q_A CD180 antigen; protein- 99.9 2.1E-25 7E-30 214.7 15.5 238 4-244 275-538 (606)
23 1xku_A Decorin; proteoglycan, 99.9 1.1E-24 3.8E-29 194.1 18.9 231 8-245 32-279 (330)
24 2ft3_A Biglycan; proteoglycan, 99.9 7.8E-25 2.7E-29 195.3 17.7 227 8-245 34-280 (332)
25 3m19_A Variable lymphocyte rec 99.9 2.9E-24 9.9E-29 184.0 20.0 181 7-244 14-194 (251)
26 3o6n_A APL1; leucine-rich repe 99.9 2.2E-25 7.5E-30 203.2 13.0 229 4-244 42-287 (390)
27 1ogq_A PGIP-2, polygalacturona 99.9 6.9E-26 2.3E-30 200.5 8.7 198 41-243 52-258 (313)
28 2z80_A TOLL-like receptor 2, v 99.9 7.9E-25 2.7E-29 196.9 13.5 219 5-245 29-293 (353)
29 4eco_A Uncharacterized protein 99.9 4E-25 1.4E-29 213.7 12.0 146 5-154 247-419 (636)
30 3zyi_A Leucine-rich repeat-con 99.9 4.7E-24 1.6E-28 198.1 18.7 213 9-244 56-281 (452)
31 1xku_A Decorin; proteoglycan, 99.9 6E-24 2.1E-28 189.3 18.1 237 7-253 52-317 (330)
32 3vq2_A TLR4, TOLL-like recepto 99.9 7.8E-25 2.7E-29 210.6 13.2 239 5-247 305-563 (606)
33 3o6n_A APL1; leucine-rich repe 99.9 4.6E-24 1.6E-28 194.4 17.2 228 5-244 67-333 (390)
34 1ziw_A TOLL-like receptor 3; i 99.9 2.8E-24 9.7E-29 209.5 16.7 242 4-247 350-627 (680)
35 3zyj_A Leucine-rich repeat-con 99.9 5.4E-24 1.8E-28 197.1 17.5 223 9-244 45-270 (440)
36 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 1.8E-24 6.2E-29 206.3 14.4 136 108-246 350-490 (562)
37 4fmz_A Internalin; leucine ric 99.9 4.6E-24 1.6E-28 191.3 16.1 228 5-246 86-328 (347)
38 2z7x_B TOLL-like receptor 1, v 99.9 4.9E-24 1.7E-28 201.5 16.8 39 205-244 421-459 (520)
39 2z81_A CD282 antigen, TOLL-lik 99.9 2.6E-24 8.8E-29 204.6 14.9 125 7-131 26-168 (549)
40 3rfs_A Internalin B, repeat mo 99.9 1.8E-23 6.2E-28 181.2 18.9 183 5-245 39-221 (272)
41 3oja_B Anopheles plasmodium-re 99.9 9.2E-25 3.2E-29 209.8 11.8 229 4-244 48-293 (597)
42 1wwl_A Monocyte differentiatio 99.9 1.4E-25 4.8E-30 198.4 5.6 189 5-243 93-310 (312)
43 2z66_A Variable lymphocyte rec 99.9 2.7E-24 9.3E-29 189.5 13.5 213 10-244 10-238 (306)
44 4fmz_A Internalin; leucine ric 99.9 1.1E-23 3.8E-28 188.8 17.0 226 5-244 64-302 (347)
45 3j0a_A TOLL-like receptor 5; m 99.9 2.4E-24 8.2E-29 214.7 13.9 123 6-128 23-165 (844)
46 2z7x_B TOLL-like receptor 1, v 99.9 1.2E-24 4.1E-29 205.6 11.1 136 108-247 321-486 (520)
47 3oja_B Anopheles plasmodium-re 99.9 4.5E-24 1.6E-28 204.9 13.6 232 5-244 73-339 (597)
48 2ft3_A Biglycan; proteoglycan, 99.9 2.1E-23 7.3E-28 186.0 15.4 231 7-248 54-313 (332)
49 4ecn_A Leucine-rich repeat pro 99.9 1.4E-23 4.7E-28 207.5 15.5 143 5-152 489-659 (876)
50 3rfs_A Internalin B, repeat mo 99.9 2.3E-23 7.7E-28 180.6 14.8 178 4-244 60-237 (272)
51 2z63_A TOLL-like receptor 4, v 99.9 3.6E-23 1.2E-27 197.4 17.2 218 5-246 303-535 (570)
52 3o53_A Protein LRIM1, AGAP0063 99.9 3.6E-24 1.2E-28 189.8 8.8 213 5-242 32-250 (317)
53 4eco_A Uncharacterized protein 99.9 3.2E-24 1.1E-28 207.4 9.0 234 4-245 203-504 (636)
54 4glp_A Monocyte differentiatio 99.9 1.4E-23 4.7E-28 185.4 11.7 188 6-243 90-308 (310)
55 4ecn_A Leucine-rich repeat pro 99.9 4.3E-24 1.5E-28 211.1 9.1 143 4-152 445-634 (876)
56 3oja_A Leucine-rich immune mol 99.9 7.6E-24 2.6E-28 198.3 10.2 215 6-242 33-250 (487)
57 1wwl_A Monocyte differentiatio 99.9 2.5E-25 8.5E-30 196.8 -0.3 217 5-244 41-289 (312)
58 1h6u_A Internalin H; cell adhe 99.9 9.2E-23 3.1E-27 179.9 15.6 194 5-245 39-233 (308)
59 2o6q_A Variable lymphocyte rec 99.9 4.8E-22 1.7E-26 172.0 19.6 171 29-245 17-197 (270)
60 2xwt_C Thyrotropin receptor; s 99.9 3.5E-23 1.2E-27 175.9 12.2 182 8-246 32-222 (239)
61 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 1.7E-22 5.7E-27 192.8 18.0 135 7-149 31-181 (562)
62 2z81_A CD282 antigen, TOLL-lik 99.9 6.8E-23 2.3E-27 194.8 14.8 148 6-155 4-166 (549)
63 3vq2_A TLR4, TOLL-like recepto 99.9 1.1E-21 3.8E-26 188.7 21.7 153 10-165 14-180 (606)
64 2z63_A TOLL-like receptor 4, v 99.9 5.2E-22 1.8E-26 189.5 19.2 226 7-245 28-320 (570)
65 1o6v_A Internalin A; bacterial 99.9 2.3E-22 8E-27 187.4 16.4 203 6-244 176-390 (466)
66 1p9a_G Platelet glycoprotein I 99.9 6E-22 2.1E-26 173.1 17.4 170 26-244 8-187 (290)
67 1o6v_A Internalin A; bacterial 99.9 3.2E-22 1.1E-26 186.5 15.9 138 5-151 66-235 (466)
68 2o6s_A Variable lymphocyte rec 99.9 2.9E-22 9.9E-27 166.6 13.8 170 10-243 10-179 (208)
69 3o53_A Protein LRIM1, AGAP0063 99.9 2.1E-23 7.1E-28 184.8 6.8 207 4-239 55-272 (317)
70 3bz5_A Internalin-J, INLJ; leu 99.9 9.3E-22 3.2E-26 182.6 17.6 135 5-152 40-185 (457)
71 3oja_A Leucine-rich immune mol 99.9 5.9E-23 2E-27 192.3 9.4 205 4-237 55-270 (487)
72 3bz5_A Internalin-J, INLJ; leu 99.9 8.3E-22 2.8E-26 183.0 17.0 225 5-246 104-356 (457)
73 3m19_A Variable lymphocyte rec 99.9 1.7E-21 6E-26 166.7 17.6 192 7-256 35-232 (251)
74 2xot_A Amphoterin-induced prot 99.9 5.6E-22 1.9E-26 178.8 15.0 183 10-246 21-206 (361)
75 2z62_A TOLL-like receptor 4, v 99.9 1E-21 3.6E-26 170.4 15.7 203 10-245 10-216 (276)
76 2v9t_B SLIT homolog 2 protein 99.9 2.8E-21 9.7E-26 162.0 14.7 156 42-246 14-169 (220)
77 3cvr_A Invasion plasmid antige 99.9 1.2E-20 4.1E-25 178.7 19.8 177 7-243 59-244 (571)
78 4g8a_A TOLL-like receptor 4; l 99.9 4.2E-21 1.4E-25 185.1 16.3 219 5-246 347-584 (635)
79 4g8a_A TOLL-like receptor 4; l 99.9 3.3E-21 1.1E-25 185.9 14.9 146 8-164 53-199 (635)
80 2v70_A SLIT-2, SLIT homolog 2 99.9 3.9E-21 1.3E-25 161.2 12.8 107 42-150 35-142 (220)
81 3g06_A SSPH2 (leucine-rich rep 99.9 1.5E-20 5.1E-25 180.0 18.1 40 203-243 259-298 (622)
82 3e6j_A Variable lymphocyte rec 99.9 2.2E-20 7.4E-25 157.6 16.9 154 42-245 22-175 (229)
83 1jl5_A Outer protein YOPM; leu 99.9 2.2E-20 7.4E-25 173.3 18.4 129 7-150 91-228 (454)
84 2o6s_A Variable lymphocyte rec 99.8 1.6E-20 5.3E-25 156.1 15.0 135 7-151 28-162 (208)
85 1jl5_A Outer protein YOPM; leu 99.8 9.4E-21 3.2E-25 175.7 14.9 219 7-248 131-376 (454)
86 2v70_A SLIT-2, SLIT homolog 2 99.8 4.9E-20 1.7E-24 154.4 17.1 147 10-158 14-174 (220)
87 1h6t_A Internalin B; cell adhe 99.8 1E-20 3.5E-25 165.4 13.0 171 5-243 44-214 (291)
88 2xwt_C Thyrotropin receptor; s 99.8 4.7E-21 1.6E-25 162.7 9.8 177 4-240 52-237 (239)
89 1h6u_A Internalin H; cell adhe 99.8 6E-21 2.1E-25 168.3 10.6 171 39-245 41-211 (308)
90 4glp_A Monocyte differentiatio 99.8 9.3E-21 3.2E-25 167.2 10.7 197 29-244 65-287 (310)
91 2v9t_B SLIT homolog 2 protein 99.8 2.6E-19 9.1E-24 150.0 17.8 141 10-152 14-167 (220)
92 2ca6_A RAN GTPase-activating p 99.8 9.7E-22 3.3E-26 178.9 2.4 219 5-245 30-319 (386)
93 3g06_A SSPH2 (leucine-rich rep 99.8 2.2E-19 7.4E-24 172.0 17.1 212 8-244 41-276 (622)
94 3goz_A Leucine-rich repeat-con 99.8 3.8E-21 1.3E-25 173.4 4.2 145 7-151 22-210 (362)
95 2ast_B S-phase kinase-associat 99.8 1.1E-20 3.9E-25 168.4 6.5 183 39-242 93-284 (336)
96 1m9s_A Internalin B; cell inva 99.8 1.4E-19 4.6E-24 173.1 14.2 172 5-244 41-212 (605)
97 4ezg_A Putative uncharacterize 99.8 1.2E-19 4.2E-24 149.4 10.3 151 39-243 44-195 (197)
98 3goz_A Leucine-rich repeat-con 99.8 2.6E-20 8.9E-25 168.0 6.4 220 11-244 2-268 (362)
99 3e6j_A Variable lymphocyte rec 99.8 1E-18 3.4E-23 147.4 15.7 141 10-153 22-175 (229)
100 1xeu_A Internalin C; cellular 99.8 2.2E-20 7.4E-25 160.9 5.5 171 5-244 17-187 (263)
101 1w8a_A SLIT protein; signaling 99.8 1.1E-18 3.9E-23 143.0 15.5 133 10-155 11-144 (192)
102 4ezg_A Putative uncharacterize 99.8 2.5E-19 8.4E-24 147.5 9.9 140 5-150 42-194 (197)
103 2xot_A Amphoterin-induced prot 99.8 5.1E-19 1.7E-23 159.4 12.8 140 7-154 39-180 (361)
104 1z7x_W Ribonuclease inhibitor; 99.8 1.6E-20 5.5E-25 174.6 2.1 237 5-243 111-412 (461)
105 4ay9_X Follicle-stimulating ho 99.8 7.4E-19 2.5E-23 157.7 12.6 129 10-151 12-143 (350)
106 2ast_B S-phase kinase-associat 99.8 2.2E-20 7.4E-25 166.5 1.7 182 39-240 70-258 (336)
107 3cvr_A Invasion plasmid antige 99.8 1.9E-18 6.3E-23 163.7 14.4 161 6-230 79-255 (571)
108 1z7x_W Ribonuclease inhibitor; 99.8 5.7E-21 1.9E-25 177.6 -5.0 240 5-244 26-328 (461)
109 1h6t_A Internalin B; cell adhe 99.8 4E-18 1.4E-22 148.9 12.4 128 5-152 66-193 (291)
110 1w8a_A SLIT protein; signaling 99.8 6E-18 2.1E-22 138.6 12.2 108 42-154 11-119 (192)
111 2wfh_A SLIT homolog 2 protein 99.8 2.9E-17 1E-21 134.6 15.9 131 10-154 13-143 (193)
112 1m9s_A Internalin B; cell inva 99.7 1.2E-17 4.2E-22 159.6 14.4 158 5-228 63-220 (605)
113 2ca6_A RAN GTPase-activating p 99.7 9.3E-20 3.2E-24 165.7 -0.9 43 201-243 240-288 (386)
114 2o6r_A Variable lymphocyte rec 99.7 6.2E-17 2.1E-21 130.7 15.2 133 9-154 9-141 (177)
115 2ell_A Acidic leucine-rich nuc 99.7 8.4E-18 2.9E-22 134.6 9.1 80 42-123 27-107 (168)
116 4b8c_D Glucose-repressible alc 99.7 8.2E-18 2.8E-22 164.5 9.3 112 39-156 224-335 (727)
117 2wfh_A SLIT homolog 2 protein 99.7 6.9E-17 2.4E-21 132.3 13.4 103 42-150 13-115 (193)
118 2ell_A Acidic leucine-rich nuc 99.7 9.9E-18 3.4E-22 134.2 7.7 137 5-153 22-163 (168)
119 1xeu_A Internalin C; cellular 99.7 1.4E-16 4.7E-21 137.1 14.2 137 5-152 39-187 (263)
120 2je0_A Acidic leucine-rich nuc 99.7 1.8E-17 6E-22 130.0 7.9 82 41-124 19-101 (149)
121 2je0_A Acidic leucine-rich nuc 99.7 1.9E-17 6.5E-22 129.8 6.8 130 5-146 15-149 (149)
122 4ay9_X Follicle-stimulating ho 99.7 3.5E-17 1.2E-21 146.8 9.2 138 7-154 30-171 (350)
123 4b8c_D Glucose-repressible alc 99.7 5.3E-18 1.8E-22 165.8 3.4 148 7-166 173-320 (727)
124 2o6r_A Variable lymphocyte rec 99.7 3.4E-16 1.1E-20 126.4 13.4 105 42-151 10-114 (177)
125 1dce_A Protein (RAB geranylger 99.7 3.6E-18 1.2E-22 162.2 1.8 109 39-154 441-550 (567)
126 1a9n_A U2A', U2A'; complex (nu 99.6 3.9E-16 1.3E-20 125.9 7.9 134 59-242 15-153 (176)
127 1a9n_A U2A', U2A'; complex (nu 99.6 2.3E-16 7.9E-21 127.2 6.4 135 4-151 16-154 (176)
128 1ds9_A Outer arm dynein; leuci 99.6 2.9E-18 1E-22 141.2 -6.0 149 42-242 21-185 (198)
129 3g39_A Variable lymphocyte rec 99.6 4.7E-15 1.6E-19 118.8 12.7 107 42-153 12-118 (170)
130 3g39_A Variable lymphocyte rec 99.6 7.3E-15 2.5E-19 117.7 13.6 107 8-125 10-116 (170)
131 2r9u_A Variable lymphocyte rec 99.6 1.3E-14 4.5E-19 116.7 13.6 107 42-153 15-121 (174)
132 2r9u_A Variable lymphocyte rec 99.6 1.4E-14 4.7E-19 116.5 12.6 105 9-124 14-118 (174)
133 3ogk_B Coronatine-insensitive 99.6 3.4E-17 1.2E-21 156.8 -3.3 115 5-120 110-252 (592)
134 1dce_A Protein (RAB geranylger 99.6 4.6E-15 1.6E-19 140.9 10.5 125 7-144 441-567 (567)
135 3ogk_B Coronatine-insensitive 99.6 7.3E-17 2.5E-21 154.5 -2.0 217 5-244 268-528 (592)
136 3sb4_A Hypothetical leucine ri 99.5 1.8E-14 6.2E-19 127.9 10.8 205 6-235 48-327 (329)
137 2p1m_B Transport inhibitor res 99.5 1.3E-15 4.6E-20 145.7 -1.1 64 5-69 154-241 (594)
138 1ds9_A Outer arm dynein; leuci 99.5 5.1E-16 1.7E-20 127.7 -5.2 136 59-245 14-156 (198)
139 3un9_A NLR family member X1; l 99.5 1.7E-15 5.8E-20 136.6 -3.2 165 39-243 72-253 (372)
140 2p1m_B Transport inhibitor res 99.5 3.5E-15 1.2E-19 142.9 -1.7 40 203-242 479-519 (594)
141 2ifg_A High affinity nerve gro 99.4 5.9E-13 2E-17 118.9 12.1 107 43-154 12-120 (347)
142 3un9_A NLR family member X1; l 99.4 9E-16 3.1E-20 138.4 -7.0 191 6-241 71-282 (372)
143 2ifg_A High affinity nerve gro 99.4 7.4E-13 2.5E-17 118.3 10.8 104 10-124 11-116 (347)
144 3sb4_A Hypothetical leucine ri 99.3 1.8E-11 6.2E-16 108.5 12.5 100 62-166 225-325 (329)
145 4fdw_A Leucine rich hypothetic 99.3 6.2E-11 2.1E-15 107.7 14.9 77 41-120 159-235 (401)
146 4fdw_A Leucine rich hypothetic 99.2 1.5E-10 5.1E-15 105.2 13.6 185 8-245 158-361 (401)
147 2ra8_A Uncharacterized protein 99.0 3.7E-10 1.3E-14 101.0 7.6 145 55-243 164-321 (362)
148 2ra8_A Uncharacterized protein 98.9 7.2E-10 2.5E-14 99.1 2.6 157 39-240 172-341 (362)
149 1io0_A Tropomodulin; LRR prote 98.8 3.4E-10 1.2E-14 91.7 -1.6 117 35-151 32-165 (185)
150 1io0_A Tropomodulin; LRR prote 98.7 3.4E-09 1.2E-13 85.7 2.1 97 54-152 27-138 (185)
151 3rw6_A Nuclear RNA export fact 98.6 3.1E-09 1E-13 90.5 -1.3 66 85-152 168-235 (267)
152 3rw6_A Nuclear RNA export fact 98.5 5.9E-08 2E-12 82.6 5.2 98 44-143 148-257 (267)
153 4fs7_A Uncharacterized protein 98.3 4E-06 1.4E-10 75.9 12.4 227 5-239 69-353 (394)
154 4fs7_A Uncharacterized protein 98.3 5.1E-06 1.7E-10 75.1 12.6 202 5-239 160-376 (394)
155 3e4g_A ATP synthase subunit S, 98.2 2.4E-07 8.1E-12 73.4 0.4 92 55-148 53-150 (176)
156 3e4g_A ATP synthase subunit S, 98.2 3.8E-07 1.3E-11 72.3 1.4 83 40-122 62-150 (176)
157 4gt6_A Cell surface protein; l 98.0 0.00031 1E-08 63.3 16.3 112 104-241 258-369 (394)
158 1pgv_A TMD-1, tropomodulin TMD 97.9 7E-07 2.4E-11 72.0 -1.8 114 35-150 37-170 (197)
159 4gt6_A Cell surface protein; l 97.9 0.00031 1.1E-08 63.3 15.2 135 54-241 256-390 (394)
160 4h09_A Hypothetical leucine ri 97.7 0.00072 2.5E-08 60.5 14.3 138 56-244 210-347 (379)
161 1pgv_A TMD-1, tropomodulin TMD 97.7 2.1E-05 7.2E-10 63.4 3.1 113 7-123 41-169 (197)
162 4h09_A Hypothetical leucine ri 97.6 0.0004 1.4E-08 62.1 10.5 101 40-145 241-341 (379)
163 3rfe_A Platelet glycoprotein I 97.3 0.00049 1.7E-08 51.6 6.8 35 88-122 32-66 (130)
164 3rfe_A Platelet glycoprotein I 97.2 0.001 3.5E-08 49.9 6.8 57 42-100 11-68 (130)
165 2lz0_A Uncharacterized protein 67.1 15 0.00053 25.3 5.9 40 80-120 13-52 (100)
166 2lz0_A Uncharacterized protein 62.1 12 0.00042 25.8 4.6 48 49-97 6-53 (100)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.97 E-value=2.3e-30 Score=255.51 Aligned_cols=150 Identities=29% Similarity=0.435 Sum_probs=114.2
Q ss_pred CCcccEEEcCCCCCCCCCC---CCCCCCCeEECCCC-------------CCCCEEeCCCCcCccccCcCccCCCCccEEe
Q 019924 6 IATLYYLDLSNNFLTNIEY---FPPTNMTQLNFDSN-------------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLN 69 (334)
Q Consensus 6 l~~L~~L~Ls~n~l~~~~~---~~~~~L~~L~l~~n-------------~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 69 (334)
+++|++|++++|.+++..| ..+++|+.|++++| ++|++|++++|++++.+|..+..+++|++|+
T Consensus 393 ~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 472 (768)
T 3rgz_A 393 KNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLI 472 (768)
T ss_dssp TCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEE
T ss_pred cCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEE
Confidence 4567777777776665555 45667777777777 5677778888877777777777788888888
Q ss_pred CCCCccccCCCccccCCCCCCEEEccCCcCCcCCChhhhcCCCCCEEEeecccCcccCCCCCCCCCCCCccEEEecCCcc
Q 019924 70 LNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEF 149 (334)
Q Consensus 70 L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l 149 (334)
+++|++++.+|..+.++++|++|++++|++++.+|.+++.+++|++|++++|++++.+|..+ ..+++|+.|++++|.+
T Consensus 473 L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l--~~l~~L~~L~Ls~N~l 550 (768)
T 3rgz_A 473 LDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAEL--GDCRSLIWLDLNTNLF 550 (768)
T ss_dssp CCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGG--GGCTTCCEEECCSSEE
T ss_pred ecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHH--cCCCCCCEEECCCCcc
Confidence 88888877778778888888888888888887778888888888888888888877777755 7778888888888888
Q ss_pred ccccchhh
Q 019924 150 TGVLLTGY 157 (334)
Q Consensus 150 ~~~~~~~~ 157 (334)
++.+|..+
T Consensus 551 ~g~ip~~~ 558 (768)
T 3rgz_A 551 NGTIPAAM 558 (768)
T ss_dssp ESBCCGGG
T ss_pred CCcCChHH
Confidence 87777554
No 2
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.96 E-value=3.4e-29 Score=221.74 Aligned_cols=213 Identities=24% Similarity=0.275 Sum_probs=137.0
Q ss_pred CcccEEEcCCCCCCC--CCC---CCCCCCCeEECCC-C-------------CCCCEEeCCCCcCccccCcCccCCCCccE
Q 019924 7 ATLYYLDLSNNFLTN--IEY---FPPTNMTQLNFDS-N-------------LTHKVLDMRMNNFNGKIPRKFVKSCNLTS 67 (334)
Q Consensus 7 ~~L~~L~Ls~n~l~~--~~~---~~~~~L~~L~l~~-n-------------~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 67 (334)
.+++.|++++|.+++ ..+ ..+++|++|++++ | ++|++|++++|++++.+|..|..+++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 579999999999997 555 4566676666663 3 56666666666666666666666666677
Q ss_pred EeCCCCccccCCCccccCCCCCCEEEccCCcCCcCCChhhhcCC-CCCEEEeecccCcccCCCCCCCCCCCCccEEEecC
Q 019924 68 LNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILP-ELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSH 146 (334)
Q Consensus 68 L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~-~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~ 146 (334)
|++++|++++.+|..+.++++|++|++++|++++..|..+..++ +|++|++++|++++.+|..+ ..++ |+.|++++
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~--~~l~-L~~L~Ls~ 206 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTF--ANLN-LAFVDLSR 206 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGG--GGCC-CSEEECCS
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHH--hCCc-ccEEECcC
Confidence 77766666666666666666677777766666655666666665 66667766666665555544 4444 66666666
Q ss_pred CccccccchhhHHhHHhhhhcCCcccccccccCCCCCCceeeEEEEEeccchhhhhhhhheeEEEccCcccccCCchhhh
Q 019924 147 NEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVG 226 (334)
Q Consensus 147 N~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~ 226 (334)
|.+++..+.. +..+++|+.++...+ .+.+.... +..+++|++|+|++|++++.+|..+.
T Consensus 207 N~l~~~~~~~-~~~l~~L~~L~L~~N-------------------~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~ 265 (313)
T 1ogq_A 207 NMLEGDASVL-FGSDKNTQKIHLAKN-------------------SLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLT 265 (313)
T ss_dssp SEEEECCGGG-CCTTSCCSEEECCSS-------------------EECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGG
T ss_pred CcccCcCCHH-HhcCCCCCEEECCCC-------------------ceeeecCc-ccccCCCCEEECcCCcccCcCChHHh
Confidence 6666554432 344444433333221 12211111 23356777777777777777777777
Q ss_pred CcCCCCeeeccCCccCC
Q 019924 227 KLNLLKGLNISHNNLTG 243 (334)
Q Consensus 227 ~l~~L~~L~Ls~N~l~~ 243 (334)
.+++|+.|++++|++++
T Consensus 266 ~l~~L~~L~Ls~N~l~~ 282 (313)
T 1ogq_A 266 QLKFLHSLNVSFNNLCG 282 (313)
T ss_dssp GCTTCCEEECCSSEEEE
T ss_pred cCcCCCEEECcCCcccc
Confidence 77777777777777764
No 3
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.95 E-value=5e-28 Score=238.85 Aligned_cols=159 Identities=27% Similarity=0.388 Sum_probs=121.6
Q ss_pred cccEEEcCCCCCCCCCC---C--CCCCCCeEECCCC-------------CCCCEEeCCCCcCccccCcCccCCCCccEEe
Q 019924 8 TLYYLDLSNNFLTNIEY---F--PPTNMTQLNFDSN-------------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLN 69 (334)
Q Consensus 8 ~L~~L~Ls~n~l~~~~~---~--~~~~L~~L~l~~n-------------~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 69 (334)
+|++|++++|.+++..+ . .+++|+.|++++| ++|++|++++|++++.+|..|..+++|+.|+
T Consensus 369 ~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 448 (768)
T 3rgz_A 369 SLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLK 448 (768)
T ss_dssp TCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEE
T ss_pred CCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEE
Confidence 45555555555544333 1 1556777777777 5788888888888888888888888888888
Q ss_pred CCCCccccCCCccccCCCCCCEEEccCCcCCcCCChhhhcCCCCCEEEeecccCcccCCCCCCCCCCCCccEEEecCCcc
Q 019924 70 LNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEF 149 (334)
Q Consensus 70 L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l 149 (334)
+++|++++.+|..+..+++|++|++++|++++..|..+..+++|++|++++|++++.+|..+ ..+++|++|++++|++
T Consensus 449 L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~--~~l~~L~~L~L~~N~l 526 (768)
T 3rgz_A 449 LWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWI--GRLENLAILKLSNNSF 526 (768)
T ss_dssp CCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGG--GGCTTCCEEECCSSCC
T ss_pred CCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHH--hcCCCCCEEECCCCcc
Confidence 88888888888888888888888888888888788888888888888888888888887765 7788899999999988
Q ss_pred ccccchhhHHhHHhhhhcCC
Q 019924 150 TGVLLTGYLDNFKAMMHGNN 169 (334)
Q Consensus 150 ~~~~~~~~~~~l~~L~~~~~ 169 (334)
++.+|.. +..+++|..++.
T Consensus 527 ~~~~p~~-l~~l~~L~~L~L 545 (768)
T 3rgz_A 527 SGNIPAE-LGDCRSLIWLDL 545 (768)
T ss_dssp EEECCGG-GGGCTTCCEEEC
T ss_pred cCcCCHH-HcCCCCCCEEEC
Confidence 8877755 666666655544
No 4
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.95 E-value=1.6e-26 Score=201.73 Aligned_cols=216 Identities=17% Similarity=0.132 Sum_probs=160.8
Q ss_pred cEEEcCCCCCCCCCCCCCCCCCeEECCCC-------------CCCCEEeCCCCcCccccCcCccCCCCccEEeCCCCc-c
Q 019924 10 YYLDLSNNFLTNIEYFPPTNMTQLNFDSN-------------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNR-L 75 (334)
Q Consensus 10 ~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n-------------~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~-l 75 (334)
++++.+++.++.++....++++.|++++| ++|++|++++|.+++..|..|..+++|++|++++|+ +
T Consensus 14 ~~~~c~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l 93 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQL 93 (285)
T ss_dssp CEEECCSSCCSSCCTTCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTC
T ss_pred eEEEcCcCCcccCCcCCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCc
Confidence 45566666666555444556666666655 466889999999887778888889999999999987 7
Q ss_pred ccCCCccccCCCCCCEEEccCCcCCcCCChhhhcCCCCCEEEeecccCcccCCCCCCCCCCCCccEEEecCCccccccch
Q 019924 76 EGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLT 155 (334)
Q Consensus 76 ~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 155 (334)
+...|..+.++++|++|++++|.+++..|..+..+++|++|++++|++++..+..+ ..+++|+.|++++|.+++..+
T Consensus 94 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~n~l~~~~~- 170 (285)
T 1ozn_A 94 RSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTF--RDLGNLTHLFLHGNRISSVPE- 170 (285)
T ss_dssp CCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT--TTCTTCCEEECCSSCCCEECT-
T ss_pred cccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHh--ccCCCccEEECCCCcccccCH-
Confidence 76667888888999999999999888778888888999999999998876555444 778889999999998876544
Q ss_pred hhHHhHHhhhhcCCcccccccccCCCCCCceeeEEEEEeccchhhhhhhhheeEEEccCcccccCCchhhhCcCCCCeee
Q 019924 156 GYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLN 235 (334)
Q Consensus 156 ~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 235 (334)
..+..+++|..++...+ .+.++....+..+++|+.|++++|.+++..+..+..+++|+.|+
T Consensus 171 ~~~~~l~~L~~L~l~~n-------------------~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 231 (285)
T 1ozn_A 171 RAFRGLHSLDRLLLHQN-------------------RVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLR 231 (285)
T ss_dssp TTTTTCTTCCEEECCSS-------------------CCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEE
T ss_pred HHhcCccccCEEECCCC-------------------cccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEe
Confidence 22444444444333221 12223334445578899999999999977777899999999999
Q ss_pred ccCCccCCCCCC
Q 019924 236 ISHNNLTGLCGF 247 (334)
Q Consensus 236 Ls~N~l~~l~~~ 247 (334)
+++|++++.|..
T Consensus 232 l~~N~~~c~~~~ 243 (285)
T 1ozn_A 232 LNDNPWVCDCRA 243 (285)
T ss_dssp CCSSCEECSGGG
T ss_pred ccCCCccCCCCc
Confidence 999999876654
No 5
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.95 E-value=6e-27 Score=206.57 Aligned_cols=218 Identities=19% Similarity=0.253 Sum_probs=175.1
Q ss_pred CcccEEEcCCCCCCCCCC---CCCCCCCeEECCCC---------------CCCCEEeCCCCcCccccCcCccCCCCccEE
Q 019924 7 ATLYYLDLSNNFLTNIEY---FPPTNMTQLNFDSN---------------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSL 68 (334)
Q Consensus 7 ~~L~~L~Ls~n~l~~~~~---~~~~~L~~L~l~~n---------------~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 68 (334)
++|++|++++|.++.+++ ..+++|+.|++++| ++|++|++++|.++ .+|..+..+++|++|
T Consensus 28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L 106 (306)
T 2z66_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHL 106 (306)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEE-EEEEEEETCTTCCEE
T ss_pred CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccc-cChhhcCCCCCCCEE
Confidence 589999999999998776 46788999999988 67999999999998 567778899999999
Q ss_pred eCCCCccccCCC-ccccCCCCCCEEEccCCcCCcCCChhhhcCCCCCEEEeecccCcc-cCCCCCCCCCCCCccEEEecC
Q 019924 69 NLNGNRLEGPLP-PSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWG-PIGENTTIVPFPSLRIIDLSH 146 (334)
Q Consensus 69 ~L~~n~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~-~~~~~~~~~~l~~L~~L~Ls~ 146 (334)
++++|++++..+ ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++ ..+..+ ..+++|+.|++++
T Consensus 107 ~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~--~~l~~L~~L~Ls~ 184 (306)
T 2z66_A 107 DFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIF--TELRNLTFLDLSQ 184 (306)
T ss_dssp ECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCC--TTCTTCCEEECTT
T ss_pred ECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHH--hhCcCCCEEECCC
Confidence 999999986554 578889999999999999988888888999999999999999876 456655 7889999999999
Q ss_pred CccccccchhhHHhHHhhhhcCCcccccccccCCCCCCceeeEEEEEeccchhhhhhhhheeEEEccCcccccCCchhhh
Q 019924 147 NEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVG 226 (334)
Q Consensus 147 N~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~ 226 (334)
|.+++..+.. +..+++|+.++...+. +..++...+..+++|+.|++++|++++..|..+.
T Consensus 185 n~l~~~~~~~-~~~l~~L~~L~L~~N~-------------------l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 244 (306)
T 2z66_A 185 CQLEQLSPTA-FNSLSSLQVLNMSHNN-------------------FFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQ 244 (306)
T ss_dssp SCCCEECTTT-TTTCTTCCEEECTTSC-------------------CSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCC
T ss_pred CCcCCcCHHH-hcCCCCCCEEECCCCc-------------------cCccChhhccCcccCCEeECCCCCCcccCHHHHH
Confidence 9998765533 4555555444432221 2223333445578899999999999988888888
Q ss_pred CcC-CCCeeeccCCccCCCCCC
Q 019924 227 KLN-LLKGLNISHNNLTGLCGF 247 (334)
Q Consensus 227 ~l~-~L~~L~Ls~N~l~~l~~~ 247 (334)
.++ +|+.|++++|++++.|..
T Consensus 245 ~~~~~L~~L~L~~N~~~~~c~~ 266 (306)
T 2z66_A 245 HFPSSLAFLNLTQNDFACTCEH 266 (306)
T ss_dssp CCCTTCCEEECTTCCEECSGGG
T ss_pred hhhccCCEEEccCCCeecccCh
Confidence 884 899999999999887753
No 6
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.94 E-value=7.5e-27 Score=217.06 Aligned_cols=150 Identities=23% Similarity=0.257 Sum_probs=122.0
Q ss_pred CcccEEEcCCCCCCCCCC---CCCCCCCeEECCCC--------------CCCCEEeCCCCcCccccCcCccCCCCccEEe
Q 019924 7 ATLYYLDLSNNFLTNIEY---FPPTNMTQLNFDSN--------------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLN 69 (334)
Q Consensus 7 ~~L~~L~Ls~n~l~~~~~---~~~~~L~~L~l~~n--------------~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 69 (334)
++|++||+++|.++++.+ ..+++|++|++++| ++|++|++++|++++..|..|.++++|++|+
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 109 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT 109 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence 578999999999998766 56788999999888 6789999999999988899999999999999
Q ss_pred CCCCccccCCCcc--ccCCCCCCEEEccCCcCCcCCChh-hhcCCCCCEEEeecccCcccCCCCCC--------------
Q 019924 70 LNGNRLEGPLPPS--LVNCHHLEVLNVGNNQINDNFPNW-LEILPELQVLILRSNRFWGPIGENTT-------------- 132 (334)
Q Consensus 70 L~~n~l~~~~p~~--l~~l~~L~~L~Ls~N~l~~~~~~~-l~~l~~L~~L~L~~N~l~~~~~~~~~-------------- 132 (334)
+++|++++..|.. +.++++|++|++++|++++..|.. +..+++|++|++++|++++..+..+.
T Consensus 110 L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~ 189 (455)
T 3v47_A 110 LTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSS 189 (455)
T ss_dssp CTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTT
T ss_pred CCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcccccccccccccc
Confidence 9999998654444 888999999999999998876765 78999999999999998776655431
Q ss_pred ------------------CCCCCCccEEEecCCccccccchh
Q 019924 133 ------------------IVPFPSLRIIDLSHNEFTGVLLTG 156 (334)
Q Consensus 133 ------------------~~~l~~L~~L~Ls~N~l~~~~~~~ 156 (334)
+..+++|+.|++++|.+++..+..
T Consensus 190 n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~ 231 (455)
T 3v47_A 190 ITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKR 231 (455)
T ss_dssp CBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHH
T ss_pred CcccccchhhccccccccccccceeeeEecCCCcccccchhh
Confidence 113367888888888776654433
No 7
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.94 E-value=7.1e-27 Score=218.63 Aligned_cols=239 Identities=19% Similarity=0.138 Sum_probs=129.7
Q ss_pred CCCcccEEEcCCCCCCCCCC---CCCCCCCeEECCCC-------------CCCCEEeCCCCcCccccCcCccCCCCccEE
Q 019924 5 GIATLYYLDLSNNFLTNIEY---FPPTNMTQLNFDSN-------------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSL 68 (334)
Q Consensus 5 ~l~~L~~L~Ls~n~l~~~~~---~~~~~L~~L~l~~n-------------~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 68 (334)
++++|++|+|++|.++++.+ ..+++|+.|++++| ++|++|++++|++++..|..|..+++|++|
T Consensus 54 ~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 133 (477)
T 2id5_A 54 SFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSL 133 (477)
T ss_dssp TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred CCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEE
Confidence 34555555555555555543 33455555555555 455566666666655555555566666666
Q ss_pred eCCCCccccCCCccccCCCCCCEEEccCCcCCcCCChhhhcCCCCCEEEeecccCcccCCCCCCCCCCCCccEEEec---
Q 019924 69 NLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLS--- 145 (334)
Q Consensus 69 ~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls--- 145 (334)
++++|++++..+..|.++++|++|++++|++++..+..+..+++|+.|++++|.+.+..+..+ ..+++|+.|+++
T Consensus 134 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~--~~l~~L~~L~l~~~~ 211 (477)
T 2id5_A 134 EVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSF--KRLYRLKVLEISHWP 211 (477)
T ss_dssp EECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCS--CSCTTCCEEEEECCT
T ss_pred ECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhc--ccCcccceeeCCCCc
Confidence 666666655555556666666666666666655444555566666666666666544333322 444444444444
Q ss_pred ---------------------CCccccccchhhHHhHHhhhhcCCccccccccc-----CCCCCCceeeEEEEEeccchh
Q 019924 146 ---------------------HNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMT-----PLNSSNYYESIILTIKGIDIK 199 (334)
Q Consensus 146 ---------------------~N~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~~ 199 (334)
+|.+++. +...+..+++|+.++...+.+.... .......+....+.+..+...
T Consensus 212 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 290 (477)
T 2id5_A 212 YLDTMTPNCLYGLNLTSLSITHCNLTAV-PYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPY 290 (477)
T ss_dssp TCCEECTTTTTTCCCSEEEEESSCCCSC-CHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTT
T ss_pred cccccCcccccCccccEEECcCCccccc-CHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHH
Confidence 3444322 2223444444444444332222211 112222222222233344445
Q ss_pred hhhhhhheeEEEccCcccccCCchhhhCcCCCCeeeccCCccCCCCC
Q 019924 200 MERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGLCG 246 (334)
Q Consensus 200 ~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~l~~ 246 (334)
.+..+++|+.|+|++|++++..+..|..+++|+.|++++|++++.|.
T Consensus 291 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~ 337 (477)
T 2id5_A 291 AFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCR 337 (477)
T ss_dssp TBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGG
T ss_pred HhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccc
Confidence 55567778888888888876666667777888888888888776664
No 8
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.94 E-value=1.9e-26 Score=214.27 Aligned_cols=106 Identities=20% Similarity=0.239 Sum_probs=82.0
Q ss_pred cCCCcccEEEcCCCCCCCCC-C---CCCCCCCeEECCCC-------------CCCCEEeCCCCcCccccCcC--ccCCCC
Q 019924 4 LGIATLYYLDLSNNFLTNIE-Y---FPPTNMTQLNFDSN-------------LTHKVLDMRMNNFNGKIPRK--FVKSCN 64 (334)
Q Consensus 4 ~~l~~L~~L~Ls~n~l~~~~-~---~~~~~L~~L~l~~n-------------~~L~~L~Ls~N~l~~~~p~~--~~~l~~ 64 (334)
.++++|++|++++|.+.+.. + ..+++|++|++++| ++|++|++++|++++..|.. |..+++
T Consensus 51 ~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~ 130 (455)
T 3v47_A 51 SRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTS 130 (455)
T ss_dssp SSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTT
T ss_pred ccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCccc
Confidence 35788888888888886432 2 55778888888888 67888888888888655544 888888
Q ss_pred ccEEeCCCCccccCCCcc-ccCCCCCCEEEccCCcCCcCCChhhhc
Q 019924 65 LTSLNLNGNRLEGPLPPS-LVNCHHLEVLNVGNNQINDNFPNWLEI 109 (334)
Q Consensus 65 L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~Ls~N~l~~~~~~~l~~ 109 (334)
|++|++++|++++..|.. +.++++|++|++++|++++..+..+..
T Consensus 131 L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~ 176 (455)
T 3v47_A 131 LEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLN 176 (455)
T ss_dssp CCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGG
T ss_pred CCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhc
Confidence 888888888888776765 788888888888888888766655543
No 9
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.94 E-value=2.5e-25 Score=192.70 Aligned_cols=193 Identities=22% Similarity=0.210 Sum_probs=113.3
Q ss_pred cccEEEcCCCCCCCCCCCCCCCCCeEECCCC-------------CCCCEEeCCCCcCccccCcCccCCCCccEEeCCCCc
Q 019924 8 TLYYLDLSNNFLTNIEYFPPTNMTQLNFDSN-------------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNR 74 (334)
Q Consensus 8 ~L~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n-------------~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~ 74 (334)
+.+.++++++.++.++....++++.|++++| ++|++|++++|+++...+..|..+++|++|++++|+
T Consensus 17 ~~~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~ 96 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNK 96 (270)
T ss_dssp TTTEEECTTSCCSSCCSCCCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSC
T ss_pred CCCEEEccCCCCCccCCCCCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCc
Confidence 5788999999999876644555655544444 344445555555443333334444455555555555
Q ss_pred cccCCCccccCCCCCCEEEccCCcCCcCCChhhhcCCCCCEEEeecccCcccCCCCCCCCCCCCccEEEecCCccccccc
Q 019924 75 LEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLL 154 (334)
Q Consensus 75 l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 154 (334)
+++..+..|.++++|++|++++|++++..+..|..+++|++|++++|++++..+..+ ..+++|+.|++++|.+++.
T Consensus 97 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~--~~l~~L~~L~L~~n~l~~~-- 172 (270)
T 2o6q_A 97 LQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVF--DKLTSLKELRLYNNQLKRV-- 172 (270)
T ss_dssp CCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT--TTCTTCCEEECCSSCCSCC--
T ss_pred CCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHc--cCCcccceeEecCCcCcEe--
Confidence 443333444444455555555555444444444444555555555554433222222 4444455555555544432
Q ss_pred hhhHHhHHhhhhcCCcccccccccCCCCCCceeeEEEEEeccchhhhhhhhheeEEEccCcccccCCchhhhCcCCCCee
Q 019924 155 TGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGL 234 (334)
Q Consensus 155 ~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L 234 (334)
+...+..+++|+.|+|++|++++..+..+..+++|+.|
T Consensus 173 ------------------------------------------~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 210 (270)
T 2o6q_A 173 ------------------------------------------PEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKML 210 (270)
T ss_dssp ------------------------------------------CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEE
T ss_pred ------------------------------------------ChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEE
Confidence 22223347889999999999997777778999999999
Q ss_pred eccCCccCCCCC
Q 019924 235 NISHNNLTGLCG 246 (334)
Q Consensus 235 ~Ls~N~l~~l~~ 246 (334)
++++|++.+.|.
T Consensus 211 ~l~~N~~~c~c~ 222 (270)
T 2o6q_A 211 QLQENPWDCTCN 222 (270)
T ss_dssp ECCSSCBCCSSS
T ss_pred EecCCCeeCCCc
Confidence 999999987775
No 10
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.94 E-value=3.1e-26 Score=214.24 Aligned_cols=235 Identities=20% Similarity=0.149 Sum_probs=171.9
Q ss_pred cCCCcccEEEcCCCCCCCCCC---CCCCCCCeEECCCC-------------CCCCEEeCCCCcCccccCcCccCCCCccE
Q 019924 4 LGIATLYYLDLSNNFLTNIEY---FPPTNMTQLNFDSN-------------LTHKVLDMRMNNFNGKIPRKFVKSCNLTS 67 (334)
Q Consensus 4 ~~l~~L~~L~Ls~n~l~~~~~---~~~~~L~~L~l~~n-------------~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 67 (334)
.++++|++|+|++|.++++++ ..+++|+.|++++| ++|++|++++|++++..+..|..+++|+.
T Consensus 77 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 156 (477)
T 2id5_A 77 NNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQ 156 (477)
T ss_dssp TTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCE
T ss_pred hCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCE
Confidence 367899999999999998876 46789999999988 68999999999999888889999999999
Q ss_pred EeCCCCccccCCCccccCCCCCCEEEccCCcCCcCCChhhhcCCCCCEEEeecccCcccCCCCC----------------
Q 019924 68 LNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENT---------------- 131 (334)
Q Consensus 68 L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~---------------- 131 (334)
|++++|++++..+..+.++++|+.|++++|.+.+..+..+..+++|++|++++|.+.+.++...
T Consensus 157 L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l 236 (477)
T 2id5_A 157 LTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNL 236 (477)
T ss_dssp EEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCC
T ss_pred EECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcc
Confidence 9999999997666678889999999999998888777677777777777776655433322210
Q ss_pred ------CCCCCCCccEEEecCCccccccchhhHHhHHhhhhcCCcccccccc-----cCCCCCCceeeEEEEEeccchhh
Q 019924 132 ------TIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYM-----TPLNSSNYYESIILTIKGIDIKM 200 (334)
Q Consensus 132 ------~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~~~ 200 (334)
.+..+++|+.|++++|.+++..+ ..+..+.+|+.++...+.+... ........+....+.+..++...
T Consensus 237 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 315 (477)
T 2id5_A 237 TAVPYLAVRHLVYLRFLNLSYNPISTIEG-SMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESV 315 (477)
T ss_dssp CSCCHHHHTTCTTCCEEECCSSCCCEECT-TSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGG
T ss_pred cccCHHHhcCccccCeeECCCCcCCccCh-hhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhH
Confidence 23678899999999999987655 3366677776666544433322 23333444444444566667777
Q ss_pred hhhhhheeEEEccCcccccCCc-hhhhCcCCCCeeeccCCcc
Q 019924 201 ERILTIFMTIDLSSNKFQGGIP-EVVGKLNLLKGLNISHNNL 241 (334)
Q Consensus 201 ~~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~Ls~N~l 241 (334)
+..+++|+.|+|++|.+....+ .++ ...+..+++.++..
T Consensus 316 ~~~l~~L~~L~l~~N~l~c~c~~~~~--~~~~~~~~~~~~~~ 355 (477)
T 2id5_A 316 FHSVGNLETLILDSNPLACDCRLLWV--FRRRWRLNFNRQQP 355 (477)
T ss_dssp BSCGGGCCEEECCSSCEECSGGGHHH--HTTTTSSCCTTCCC
T ss_pred cCCCcccCEEEccCCCccCccchHhH--HhhhhccccCccCc
Confidence 7788999999999999985432 122 22333455555544
No 11
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.94 E-value=1.2e-25 Score=219.21 Aligned_cols=237 Identities=19% Similarity=0.189 Sum_probs=180.2
Q ss_pred CCCcccEEEcCCCCCCCCCC---CCCCCCCeEECCCC-----------------CCCCEEeCCCCcCccccCcCccCCCC
Q 019924 5 GIATLYYLDLSNNFLTNIEY---FPPTNMTQLNFDSN-----------------LTHKVLDMRMNNFNGKIPRKFVKSCN 64 (334)
Q Consensus 5 ~l~~L~~L~Ls~n~l~~~~~---~~~~~L~~L~l~~n-----------------~~L~~L~Ls~N~l~~~~p~~~~~l~~ 64 (334)
++++|++|++++|.+++..+ ..+++|++|++++| +.|++|++++|++++..|..|..+++
T Consensus 327 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~ 406 (680)
T 1ziw_A 327 WLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGH 406 (680)
T ss_dssp TCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTT
T ss_pred cCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCC
Confidence 57899999999999998876 56788999999987 37999999999999888999999999
Q ss_pred ccEEeCCCCccccCCC-ccccCCCCCCEEEccCCcCCcCCChhhhcCCCCCEEEeecccCc--ccCCCCCCCCCCCCccE
Q 019924 65 LTSLNLNGNRLEGPLP-PSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFW--GPIGENTTIVPFPSLRI 141 (334)
Q Consensus 65 L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~--~~~~~~~~~~~l~~L~~ 141 (334)
|+.|++++|++++.+| ..+.++++|++|++++|++.+..+..+..+++|++|++++|.+. +..|..+ ..+++|+.
T Consensus 407 L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~--~~l~~L~~ 484 (680)
T 1ziw_A 407 LEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPF--QPLRNLTI 484 (680)
T ss_dssp CCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTT--TTCTTCCE
T ss_pred CCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCccc--ccCCCCCE
Confidence 9999999999987655 68899999999999999998877888888888888888888875 3445544 77888888
Q ss_pred EEecCCccccccchhhHHhHHhhhhcCCcccccccc-------------cCCCCCCceeeEEEEEeccchhhhhhhhhee
Q 019924 142 IDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYM-------------TPLNSSNYYESIILTIKGIDIKMERILTIFM 208 (334)
Q Consensus 142 L~Ls~N~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~-------------~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~ 208 (334)
|++++|++++..+ ..+..+++|+.++...+.+..+ ........+....+.+..++...+..+++|+
T Consensus 485 L~Ls~N~l~~i~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~ 563 (680)
T 1ziw_A 485 LDLSNNNIANIND-DMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELK 563 (680)
T ss_dssp EECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred EECCCCCCCcCCh-hhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcc
Confidence 8888888886544 3366666666655544333322 1222222333333334455555666778888
Q ss_pred EEEccCcccccCCchhhhCcCCCCeeeccCCccCCC
Q 019924 209 TIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGL 244 (334)
Q Consensus 209 ~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~l 244 (334)
.|+|++|++++..+..|..+++|+.|++++|+++++
T Consensus 564 ~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~ 599 (680)
T 1ziw_A 564 IIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSV 599 (680)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBC
T ss_pred eeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCcc
Confidence 888888888866666677888888888888887754
No 12
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.94 E-value=6.5e-26 Score=218.16 Aligned_cols=234 Identities=19% Similarity=0.181 Sum_probs=132.5
Q ss_pred cccEEEcCCCCCCCCCC---CCCCCCCeEECCCC------------CCCCEEeCCCCcCccccCcCccCCCCccEEeCCC
Q 019924 8 TLYYLDLSNNFLTNIEY---FPPTNMTQLNFDSN------------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNG 72 (334)
Q Consensus 8 ~L~~L~Ls~n~l~~~~~---~~~~~L~~L~l~~n------------~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~ 72 (334)
+|+.|++++|.++++++ ..+++|+.|++++| ++|++|++++|++++..|..+..+++|++|++++
T Consensus 255 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 334 (606)
T 3t6q_A 255 SVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKG 334 (606)
T ss_dssp EEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCS
T ss_pred ceeEEEeecCccCccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCC
Confidence 56666666666666555 34556666666666 4566666666666665566666666666666666
Q ss_pred CccccCCCc-cccCCCCCCEEEccCCcCCcCC--ChhhhcCCCCCEEEeecccCcccCCCCCCCCCCCCccEEEecCCcc
Q 019924 73 NRLEGPLPP-SLVNCHHLEVLNVGNNQINDNF--PNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEF 149 (334)
Q Consensus 73 n~l~~~~p~-~l~~l~~L~~L~Ls~N~l~~~~--~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l 149 (334)
|.+.+.+|. .+.++++|++|++++|.+++.. +..+..+++|++|++++|++.+..+..+ ..+++|+.|++++|.+
T Consensus 335 n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~n~l 412 (606)
T 3t6q_A 335 NTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAF--KECPQLELLDLAFTRL 412 (606)
T ss_dssp CSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTT--TTCTTCSEEECTTCCE
T ss_pred CCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHh--cCCccCCeEECCCCcC
Confidence 666544433 3666666666666666665543 4556666666666666666655555444 5566666666666666
Q ss_pred ccccchhhHHhHHhhhhcCCcccccccccC--CCCCCceeeEEEEEeccch------hhhhhhhheeEEEccCcccccCC
Q 019924 150 TGVLLTGYLDNFKAMMHGNNISVEVDYMTP--LNSSNYYESIILTIKGIDI------KMERILTIFMTIDLSSNKFQGGI 221 (334)
Q Consensus 150 ~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~------~~~~~l~~L~~L~Ls~N~l~~~~ 221 (334)
.+..+...+..+++|..++.....+..... ......+..+.+..+.+.. ..+..+++|+.|++++|++++..
T Consensus 413 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 492 (606)
T 3t6q_A 413 KVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSID 492 (606)
T ss_dssp ECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEEC
T ss_pred CCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccC
Confidence 655444444455555444443322221111 1111222222222222211 23444666667777777666666
Q ss_pred chhhhCcCCCCeeeccCCccCC
Q 019924 222 PEVVGKLNLLKGLNISHNNLTG 243 (334)
Q Consensus 222 p~~l~~l~~L~~L~Ls~N~l~~ 243 (334)
|..+..+++|+.|++++|++++
T Consensus 493 ~~~~~~l~~L~~L~Ls~N~l~~ 514 (606)
T 3t6q_A 493 QHAFTSLKMMNHVDLSHNRLTS 514 (606)
T ss_dssp TTTTTTCTTCCEEECCSSCCCG
T ss_pred hhhhccccCCCEEECCCCccCc
Confidence 6666666667777777766664
No 13
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.94 E-value=4.7e-25 Score=192.89 Aligned_cols=194 Identities=23% Similarity=0.172 Sum_probs=145.8
Q ss_pred cCCCcccEEEcCCCCCCCCCCCCCCCCCeEECCCC-------------CCCCEEeCCCCcCccccCcCccCCCCccEEeC
Q 019924 4 LGIATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSN-------------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNL 70 (334)
Q Consensus 4 ~~l~~L~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n-------------~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 70 (334)
.++++++.+++++|.++.+++...++++.|++++| ++|++|++++|++++..+ . ..+++|++|++
T Consensus 7 ~~l~~l~~l~~~~~~l~~ip~~~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~-~~l~~L~~L~L 84 (290)
T 1p9a_G 7 SKVASHLEVNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV-D-GTLPVLGTLDL 84 (290)
T ss_dssp ECSTTCCEEECTTSCCSSCCSCCCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC-C-SCCTTCCEEEC
T ss_pred cccCCccEEECCCCCCCcCCCCCCCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC-C-CCCCcCCEEEC
Confidence 36789999999999999888766678877777777 567777777777774332 2 56777777777
Q ss_pred CCCccccCCCccccCCCCCCEEEccCCcCCcCCChhhhcCCCCCEEEeecccCcccCCCCCCCCCCCCccEEEecCCccc
Q 019924 71 NGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFT 150 (334)
Q Consensus 71 ~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~ 150 (334)
++|+++ .+|..+.++++|++|++++|++++..+..|..+++|++|++++|++++..+..+ ..+++|+.|++++|+++
T Consensus 85 s~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~L~~N~l~ 161 (290)
T 1p9a_G 85 SHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLL--TPTPKLEKLSLANNNLT 161 (290)
T ss_dssp CSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTT--TTCTTCCEEECTTSCCS
T ss_pred CCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhc--ccccCCCEEECCCCcCC
Confidence 777777 566667777777777777777777666677777777777777777765444433 66777777777777776
Q ss_pred cccchhhHHhHHhhhhcCCcccccccccCCCCCCceeeEEEEEeccchhhhhhhhheeEEEccCcccccCCchhhhCcCC
Q 019924 151 GVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNL 230 (334)
Q Consensus 151 ~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~ 230 (334)
+..+ ..+..+++|+.|+|++|+++ .+|..+..+++
T Consensus 162 ~l~~--------------------------------------------~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~ 196 (290)
T 1p9a_G 162 ELPA--------------------------------------------GLLNGLENLDTLLLQENSLY-TIPKGFFGSHL 196 (290)
T ss_dssp CCCT--------------------------------------------TTTTTCTTCCEEECCSSCCC-CCCTTTTTTCC
T ss_pred ccCH--------------------------------------------HHhcCcCCCCEEECCCCcCC-ccChhhccccc
Confidence 4332 12223678999999999998 78888888999
Q ss_pred CCeeeccCCccCCCCCC
Q 019924 231 LKGLNISHNNLTGLCGF 247 (334)
Q Consensus 231 L~~L~Ls~N~l~~l~~~ 247 (334)
|+.+++++|++.+-|+.
T Consensus 197 L~~l~L~~Np~~C~c~~ 213 (290)
T 1p9a_G 197 LPFAFLHGNPWLCNCEI 213 (290)
T ss_dssp CSEEECCSCCBCCSGGG
T ss_pred CCeEEeCCCCccCcCcc
Confidence 99999999999887753
No 14
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.94 E-value=2e-25 Score=193.89 Aligned_cols=208 Identities=18% Similarity=0.151 Sum_probs=163.3
Q ss_pred cccEEEcCCCCCCCCCCCCCCCCCeEECCCCCCCCEEeCCCCcCccccCcCccCCCCccEEeCCCCccccCCCccccCCC
Q 019924 8 TLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCH 87 (334)
Q Consensus 8 ~L~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~ 87 (334)
+|++|++++|.++++++..+.++..| ++|++++|++++..+..|..+++|++|++++|++++..+..|.+++
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L--------~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 100 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPEL--------QVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLS 100 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTC--------SEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCT
T ss_pred CccEEECCCCcccccCHhHhccccCC--------cEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCc
Confidence 57888888888877766555555544 9999999999987778899999999999999999988888899999
Q ss_pred CCCEEEccCCcCCcCCChhhhcCCCCCEEEeecccCccc-CCCCCCCCCCCCccEEEecCCccccccchhhHHhHHhhhh
Q 019924 88 HLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGP-IGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMH 166 (334)
Q Consensus 88 ~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~ 166 (334)
+|++|++++|.+.+..+..++.+++|++|++++|++++. ++..+ ..+++|+.|++++|++++..+. .+..+..+..
T Consensus 101 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~--~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~ 177 (276)
T 2z62_A 101 SLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYF--SNLTNLEHLDLSSNKIQSIYCT-DLRVLHQMPL 177 (276)
T ss_dssp TCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGG--GGCTTCCEEECCSSCCCEECGG-GGHHHHTCTT
T ss_pred cccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhh--ccCCCCCEEECCCCCCCcCCHH-Hhhhhhhccc
Confidence 999999999999987776789999999999999999753 35544 7899999999999999876553 3666665543
Q ss_pred cC----CcccccccccCCCCCCceeeEEEEEeccchhhhhhhhheeEEEccCcccccCCchhhhCcCCCCeeeccCCccC
Q 019924 167 GN----NISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLT 242 (334)
Q Consensus 167 ~~----~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 242 (334)
+. ...+. +..++...+. ..+|+.|++++|++++..+..+.++++|+.|++++|+++
T Consensus 178 l~l~L~ls~n~-------------------l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 237 (276)
T 2z62_A 178 LNLSLDLSLNP-------------------MNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 237 (276)
T ss_dssp CCEEEECCSSC-------------------CCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBC
T ss_pred cceeeecCCCc-------------------ccccCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCccc
Confidence 22 11111 1112222222 337999999999999777777899999999999999999
Q ss_pred CCCC
Q 019924 243 GLCG 246 (334)
Q Consensus 243 ~l~~ 246 (334)
+-|.
T Consensus 238 c~c~ 241 (276)
T 2z62_A 238 CSCP 241 (276)
T ss_dssp CCTT
T ss_pred ccCC
Confidence 7764
No 15
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.93 E-value=1.4e-25 Score=201.88 Aligned_cols=235 Identities=19% Similarity=0.192 Sum_probs=150.3
Q ss_pred CcccEEEcCCCCCCCCCC---CCCCCCCeEECCCC-------------CCCCEEeCCCCcCccccCcCccCCCCccEEeC
Q 019924 7 ATLYYLDLSNNFLTNIEY---FPPTNMTQLNFDSN-------------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNL 70 (334)
Q Consensus 7 ~~L~~L~Ls~n~l~~~~~---~~~~~L~~L~l~~n-------------~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 70 (334)
++|++|++++|.++++++ ..+++|+.|++++| ++|++|++++|++++..+..|..+++|++|++
T Consensus 52 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 131 (353)
T 2z80_A 52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNL 131 (353)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEEC
T ss_pred ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEEC
Confidence 467777777777776655 45566777777766 56777777777777544444677777777777
Q ss_pred CCCccccCCC-ccccCCCCCCEEEccCC-cCCcCCChhhhcCCCCCEEEeecccCcccCCCCCCCCCCCCccEEEecCCc
Q 019924 71 NGNRLEGPLP-PSLVNCHHLEVLNVGNN-QINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNE 148 (334)
Q Consensus 71 ~~n~l~~~~p-~~l~~l~~L~~L~Ls~N-~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~ 148 (334)
++|++++..+ ..+.++++|++|++++| .++...+..+..+++|++|++++|++++..+..+ ..+++|++|++++|.
T Consensus 132 ~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l--~~l~~L~~L~l~~n~ 209 (353)
T 2z80_A 132 LGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSL--KSIQNVSHLILHMKQ 209 (353)
T ss_dssp TTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTT--TTCSEEEEEEEECSC
T ss_pred CCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHH--hccccCCeecCCCCc
Confidence 7777763333 35667777777777776 4555556667777777777777777766655554 667777777777777
Q ss_pred cccccchhhHHhHHhhhhcCCccccccccc-----CCCCCCceeeEEEEEeccch-------hhhhhhhheeEEEccCcc
Q 019924 149 FTGVLLTGYLDNFKAMMHGNNISVEVDYMT-----PLNSSNYYESIILTIKGIDI-------KMERILTIFMTIDLSSNK 216 (334)
Q Consensus 149 l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~-------~~~~~l~~L~~L~Ls~N~ 216 (334)
+.. .+...+..+++|+.++...+.+.... .......+....+....+.. ..+..+++|+.|++++|+
T Consensus 210 l~~-~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~ 288 (353)
T 2z80_A 210 HIL-LLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQ 288 (353)
T ss_dssp STT-HHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSC
T ss_pred ccc-chhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCC
Confidence 653 33344444555555444333222211 11111222233333222222 234557899999999999
Q ss_pred cccCCchh-hhCcCCCCeeeccCCccCCCC
Q 019924 217 FQGGIPEV-VGKLNLLKGLNISHNNLTGLC 245 (334)
Q Consensus 217 l~~~~p~~-l~~l~~L~~L~Ls~N~l~~l~ 245 (334)
++ .+|.. +.++++|+.|++++|++++.|
T Consensus 289 l~-~i~~~~~~~l~~L~~L~L~~N~~~~~~ 317 (353)
T 2z80_A 289 LK-SVPDGIFDRLTSLQKIWLHTNPWDCSC 317 (353)
T ss_dssp CC-CCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred CC-ccCHHHHhcCCCCCEEEeeCCCccCcC
Confidence 99 56655 689999999999999998766
No 16
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.93 E-value=8.3e-26 Score=209.99 Aligned_cols=217 Identities=18% Similarity=0.178 Sum_probs=121.2
Q ss_pred CcccEEEcCCCCCCCCCC---CCCCCCCeEECCCC-------------CCCCEEeCCCCcCccccCcCccCCCCccEEeC
Q 019924 7 ATLYYLDLSNNFLTNIEY---FPPTNMTQLNFDSN-------------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNL 70 (334)
Q Consensus 7 ~~L~~L~Ls~n~l~~~~~---~~~~~L~~L~l~~n-------------~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 70 (334)
+++++|+|++|.++++.+ ..+++|+.|++++| ++|++|+|++|+++...+..|..+++|++|++
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 154 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWL 154 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEEC
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEEC
Confidence 356677777777766655 33444445555444 34455555555554444444444555555555
Q ss_pred CCCccccCCCccccCCCCCCEEEccC-CcCCcCCChhhhcCCCCCEEEeecccCcccCCCCCCCCCCCCccEEEecCCcc
Q 019924 71 NGNRLEGPLPPSLVNCHHLEVLNVGN-NQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEF 149 (334)
Q Consensus 71 ~~n~l~~~~p~~l~~l~~L~~L~Ls~-N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l 149 (334)
++|+++...+..|.++++|++|++++ |.+....+..|..+++|++|++++|++++. +. +..+++|+.|++++|.+
T Consensus 155 ~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~~---~~~l~~L~~L~Ls~N~l 230 (452)
T 3zyi_A 155 RNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM-PN---LTPLVGLEELEMSGNHF 230 (452)
T ss_dssp CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-CC---CTTCTTCCEEECTTSCC
T ss_pred CCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-cc---ccccccccEEECcCCcC
Confidence 55555443344444455555555554 233333333444555555555555554322 11 24445555555555555
Q ss_pred ccccchhhHHhHHhhhhcCCcccccccccCCCCCCceeeEEEEEeccchhhhhhhhheeEEEccCcccccCCchhhhCcC
Q 019924 150 TGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLN 229 (334)
Q Consensus 150 ~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~ 229 (334)
++..+.. +.++++|+.++. ..+.+..+....+..+++|+.|+|++|++++..+..+..++
T Consensus 231 ~~~~~~~-~~~l~~L~~L~L-------------------~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 290 (452)
T 3zyi_A 231 PEIRPGS-FHGLSSLKKLWV-------------------MNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLR 290 (452)
T ss_dssp SEECGGG-GTTCTTCCEEEC-------------------TTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCT
T ss_pred cccCccc-ccCccCCCEEEe-------------------CCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhcccc
Confidence 5443322 333333332222 22233344455566789999999999999977778889999
Q ss_pred CCCeeeccCCccCCCCCC
Q 019924 230 LLKGLNISHNNLTGLCGF 247 (334)
Q Consensus 230 ~L~~L~Ls~N~l~~l~~~ 247 (334)
+|+.|++++|++.+.|..
T Consensus 291 ~L~~L~L~~Np~~CdC~~ 308 (452)
T 3zyi_A 291 YLVELHLHHNPWNCDCDI 308 (452)
T ss_dssp TCCEEECCSSCEECSTTT
T ss_pred CCCEEEccCCCcCCCCCc
Confidence 999999999999987763
No 17
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.93 E-value=1.1e-25 Score=200.36 Aligned_cols=147 Identities=18% Similarity=0.220 Sum_probs=127.8
Q ss_pred CCCcccEEEcCCCCCCCCCC--CCCCCCCeEECCCC------------CCCCEEeCCCCcCccccCcCccCCCCccEEeC
Q 019924 5 GIATLYYLDLSNNFLTNIEY--FPPTNMTQLNFDSN------------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNL 70 (334)
Q Consensus 5 ~l~~L~~L~Ls~n~l~~~~~--~~~~~L~~L~l~~n------------~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 70 (334)
..++++.|++++|.++.+++ ..+++|++|++++| ++|++|++++|+++ .+|..+..+++|++|++
T Consensus 79 ~~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L 157 (328)
T 4fcg_A 79 TQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSI 157 (328)
T ss_dssp TSTTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEE
T ss_pred cccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEEC
Confidence 45789999999999997766 56889999999988 78999999999999 78999999999999999
Q ss_pred CCCccccCCCccccC---------CCCCCEEEccCCcCCcCCChhhhcCCCCCEEEeecccCcccCCCCCCCCCCCCccE
Q 019924 71 NGNRLEGPLPPSLVN---------CHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRI 141 (334)
Q Consensus 71 ~~n~l~~~~p~~l~~---------l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~ 141 (334)
++|++.+.+|..+.. +++|++|++++|+++ .+|..++.+++|++|++++|++++ ++..+ ..+++|+.
T Consensus 158 ~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l--~~l~~L~~ 233 (328)
T 4fcg_A 158 RACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAI--HHLPKLEE 233 (328)
T ss_dssp EEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGG--GGCTTCCE
T ss_pred CCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-Cchhh--ccCCCCCE
Confidence 998888888887764 999999999999998 478889999999999999999975 44434 78999999
Q ss_pred EEecCCccccccchh
Q 019924 142 IDLSHNEFTGVLLTG 156 (334)
Q Consensus 142 L~Ls~N~l~~~~~~~ 156 (334)
|++++|.+.+.++..
T Consensus 234 L~Ls~n~~~~~~p~~ 248 (328)
T 4fcg_A 234 LDLRGCTALRNYPPI 248 (328)
T ss_dssp EECTTCTTCCBCCCC
T ss_pred EECcCCcchhhhHHH
Confidence 999999988876643
No 18
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.93 E-value=1.3e-26 Score=230.95 Aligned_cols=110 Identities=21% Similarity=0.227 Sum_probs=67.8
Q ss_pred CCCEEeCCCCcCccccCcCccCCCCccEEeCCCCccccCCCccccCCCCCCEEEccCCcCCcCCChhhhcCCCCCEEEee
Q 019924 40 THKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILR 119 (334)
Q Consensus 40 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~ 119 (334)
+|++|++++|.+.+..|..|..+++|+.|++++|++++..|..|.++++|++|++++|.+++..|..+..+++|++|+++
T Consensus 267 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 346 (844)
T 3j0a_A 267 SVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQ 346 (844)
T ss_dssp CCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECC
T ss_pred CccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECC
Confidence 45666666666665556666666666666666666665556666666666666666666666556666666666666666
Q ss_pred cccCcccCCCCCCCCCCCCccEEEecCCcccc
Q 019924 120 SNRFWGPIGENTTIVPFPSLRIIDLSHNEFTG 151 (334)
Q Consensus 120 ~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~ 151 (334)
+|++.+..+..+ ..+++|+.|++++|.+++
T Consensus 347 ~N~i~~~~~~~~--~~l~~L~~L~Ls~N~l~~ 376 (844)
T 3j0a_A 347 KNHIAIIQDQTF--KFLEKLQTLDLRDNALTT 376 (844)
T ss_dssp SCCCCCCCSSCS--CSCCCCCEEEEETCCSCC
T ss_pred CCCCCccChhhh--cCCCCCCEEECCCCCCCc
Confidence 666644443333 556666666666665553
No 19
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.93 E-value=1.2e-24 Score=189.93 Aligned_cols=185 Identities=19% Similarity=0.121 Sum_probs=155.0
Q ss_pred CCCCEEeCCCCcCccccCcCccCCCCccEEeCCCCccccCCCccccCCCCCCEEEccCCc-CCcCCChhhhcCCCCCEEE
Q 019924 39 LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQ-INDNFPNWLEILPELQVLI 117 (334)
Q Consensus 39 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~-l~~~~~~~l~~l~~L~~L~ 117 (334)
+++++|++++|++++..+..|..+++|++|++++|++++..|..|.++++|++|++++|. ++...|..+..+++|++|+
T Consensus 32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~ 111 (285)
T 1ozn_A 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH 111 (285)
T ss_dssp TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEE
Confidence 688999999999998888889999999999999999998889999999999999999997 8887788999999999999
Q ss_pred eecccCcccCCCCCCCCCCCCccEEEecCCccccccchhhHHhHHhhhhcCCcccccccccCCCCCCceeeEEEEEeccc
Q 019924 118 LRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGID 197 (334)
Q Consensus 118 L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 197 (334)
+++|++++..+..+ ..+++|++|++++|.+++..+ ..+..+++|+.++...+ .+..++
T Consensus 112 l~~n~l~~~~~~~~--~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n-------------------~l~~~~ 169 (285)
T 1ozn_A 112 LDRCGLQELGPGLF--RGLAALQYLYLQDNALQALPD-DTFRDLGNLTHLFLHGN-------------------RISSVP 169 (285)
T ss_dssp CTTSCCCCCCTTTT--TTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSS-------------------CCCEEC
T ss_pred CCCCcCCEECHhHh--hCCcCCCEEECCCCcccccCH-hHhccCCCccEEECCCC-------------------cccccC
Confidence 99999987766655 889999999999999986654 33555555554444222 122334
Q ss_pred hhhhhhhhheeEEEccCcccccCCchhhhCcCCCCeeeccCCccCCCC
Q 019924 198 IKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGLC 245 (334)
Q Consensus 198 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~l~ 245 (334)
...+..+++|+.|++++|.+++..|..+.++++|+.|++++|+++++.
T Consensus 170 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 217 (285)
T 1ozn_A 170 ERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALP 217 (285)
T ss_dssp TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred HHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCC
Confidence 444556889999999999999888999999999999999999988643
No 20
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.93 E-value=8.6e-26 Score=201.10 Aligned_cols=189 Identities=18% Similarity=0.173 Sum_probs=112.6
Q ss_pred CCcccEEEcCCCCCCCCCC--CCCCCCCeEECCCC------------CCCCEEeCCCCcCccccCcCccC---------C
Q 019924 6 IATLYYLDLSNNFLTNIEY--FPPTNMTQLNFDSN------------LTHKVLDMRMNNFNGKIPRKFVK---------S 62 (334)
Q Consensus 6 l~~L~~L~Ls~n~l~~~~~--~~~~~L~~L~l~~n------------~~L~~L~Ls~N~l~~~~p~~~~~---------l 62 (334)
+++|++|++++|.++.++. ..+++|++|++++| ++|++|++++|++.+.+|..+.. +
T Consensus 103 l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l 182 (328)
T 4fcg_A 103 LSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGL 182 (328)
T ss_dssp GTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEES
T ss_pred CCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccC
Confidence 5566666666666664333 34556666666665 45666666665555555555443 6
Q ss_pred CCccEEeCCCCccccCCCccccCCCCCCEEEccCCcCCcCCChhhhcCCCCCEEEeecccCcccCCCCCCCCCCCCccEE
Q 019924 63 CNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRII 142 (334)
Q Consensus 63 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L 142 (334)
++|++|++++|+++ .+|..+.++++|++|++++|++++ +|..+..+++|++|++++|.+.+.+|..+ ..+++|+.|
T Consensus 183 ~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~--~~l~~L~~L 258 (328)
T 4fcg_A 183 VNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIF--GGRAPLKRL 258 (328)
T ss_dssp TTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCEEECTTCTTCCBCCCCT--TCCCCCCEE
T ss_pred CCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCCCEEECcCCcchhhhHHHh--cCCCCCCEE
Confidence 66666666666666 555566666666666666666665 44456666666666666666655555544 556666666
Q ss_pred EecCCccccccchhhHHhHHhhhhcCCcccccccccCCCCCCceeeEEEEEeccchhhhhhhhheeEEEccCcccccCCc
Q 019924 143 DLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIP 222 (334)
Q Consensus 143 ~Ls~N~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p 222 (334)
++++|.+.+.+|.. + ..+++|+.|+|++|.+.+.+|
T Consensus 259 ~L~~n~~~~~~p~~-~-------------------------------------------~~l~~L~~L~L~~n~~~~~iP 294 (328)
T 4fcg_A 259 ILKDCSNLLTLPLD-I-------------------------------------------HRLTQLEKLDLRGCVNLSRLP 294 (328)
T ss_dssp ECTTCTTCCBCCTT-G-------------------------------------------GGCTTCCEEECTTCTTCCCCC
T ss_pred ECCCCCchhhcchh-h-------------------------------------------hcCCCCCEEeCCCCCchhhcc
Confidence 66666655544432 1 114556666666666666666
Q ss_pred hhhhCcCCCCeeeccCCccC
Q 019924 223 EVVGKLNLLKGLNISHNNLT 242 (334)
Q Consensus 223 ~~l~~l~~L~~L~Ls~N~l~ 242 (334)
+.+.++++|+.+++..|.+.
T Consensus 295 ~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 295 SLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp GGGGGSCTTCEEECCGGGSC
T ss_pred HHHhhccCceEEeCCHHHHH
Confidence 66666666666666665544
No 21
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.93 E-value=1.4e-25 Score=207.69 Aligned_cols=226 Identities=19% Similarity=0.173 Sum_probs=117.6
Q ss_pred CcccEEEcCCCCCCCCCC---CCCCCCCeEECCCCCCCCEEeCCCCcCccccCcCccCCCCccEEeCCCCccccCCCccc
Q 019924 7 ATLYYLDLSNNFLTNIEY---FPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSL 83 (334)
Q Consensus 7 ~~L~~L~Ls~n~l~~~~~---~~~~~L~~L~l~~n~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l 83 (334)
++++.|+|++|.++++.+ ..+++| ++|+|++|++++..+..|.++++|++|++++|+++...+..|
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L-----------~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 132 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHL-----------EILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAF 132 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSC-----------CEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTS
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCC-----------CEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHh
Confidence 345666666666665554 233444 555555555554444445555555555555555543333344
Q ss_pred cCCCCCCEEEccCCcCCcCCChhhhcCCCCCEEEeecccCcccCCCCCCCCCCCCccEEEecCCccccccchhhHHhHHh
Q 019924 84 VNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKA 163 (334)
Q Consensus 84 ~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~ 163 (334)
.++++|++|++++|+++...+..|..+++|++|++++|...+.++.. .+..+++|+.|++++|.++.... +..+.+
T Consensus 133 ~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~-~~~~l~~L~~L~L~~n~l~~~~~---~~~l~~ 208 (440)
T 3zyj_A 133 VYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEG-AFEGLSNLRYLNLAMCNLREIPN---LTPLIK 208 (440)
T ss_dssp CSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTT-TTTTCSSCCEEECTTSCCSSCCC---CTTCSS
T ss_pred hccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcc-hhhcccccCeecCCCCcCccccc---cCCCcc
Confidence 45555555555555554444444444555555555443222222221 12444444455554444443221 222222
Q ss_pred hhhcCCccccccc-----ccCCCCCCceeeEEEEEeccchhhhhhhhheeEEEccCcccccCCchhhhCcCCCCeeeccC
Q 019924 164 MMHGNNISVEVDY-----MTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISH 238 (334)
Q Consensus 164 L~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~ 238 (334)
|+.++...+.+.. +........+....+.+..+....+..+++|+.|+|++|++++..+..+..+++|+.|+|++
T Consensus 209 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 288 (440)
T 3zyj_A 209 LDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHH 288 (440)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCS
T ss_pred cCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCC
Confidence 2222222111111 11111122222222234444555666789999999999999987788889999999999999
Q ss_pred CccCCCCCC
Q 019924 239 NNLTGLCGF 247 (334)
Q Consensus 239 N~l~~l~~~ 247 (334)
|++.+.|..
T Consensus 289 Np~~CdC~l 297 (440)
T 3zyj_A 289 NPWNCNCDI 297 (440)
T ss_dssp SCEECSSTT
T ss_pred CCccCCCCc
Confidence 999887753
No 22
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.93 E-value=2.1e-25 Score=214.68 Aligned_cols=238 Identities=20% Similarity=0.202 Sum_probs=176.6
Q ss_pred cCCCcccEEEcCCCCCCCCCC--CCCCCCCeEECCCC-------------CCCCEEeCCCCcCccccCc-CccCCCCccE
Q 019924 4 LGIATLYYLDLSNNFLTNIEY--FPPTNMTQLNFDSN-------------LTHKVLDMRMNNFNGKIPR-KFVKSCNLTS 67 (334)
Q Consensus 4 ~~l~~L~~L~Ls~n~l~~~~~--~~~~~L~~L~l~~n-------------~~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~ 67 (334)
.++++|++|++++|.++.++. ..+++|++|++++| ++|++|++++|.+.+.+|. .+..+++|++
T Consensus 275 ~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~ 354 (606)
T 3t6q_A 275 HCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRE 354 (606)
T ss_dssp TTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCE
T ss_pred ccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCE
Confidence 357899999999999987765 56788999999988 6789999999988865554 4888889999
Q ss_pred EeCCCCccccCC--CccccCCCCCCEEEccCCcCCcCCChhhhcCCCCCEEEeecccCcccCCCCCCCCCCCCccEEEec
Q 019924 68 LNLNGNRLEGPL--PPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLS 145 (334)
Q Consensus 68 L~L~~n~l~~~~--p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls 145 (334)
|++++|++++.. |..+.++++|++|++++|++.+..|..+..+++|++|++++|++++..+.. .+..+++|+.|+++
T Consensus 355 L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~~l~~L~~L~l~ 433 (606)
T 3t6q_A 355 LDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQS-PFQNLHLLKVLNLS 433 (606)
T ss_dssp EECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCC-TTTTCTTCCEEECT
T ss_pred EECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccch-hhhCcccCCEEECC
Confidence 999999888654 677888888999999998888877888888888888988888887665543 13778888888888
Q ss_pred CCccccccchhhHHhHHhhhhcCCccccccc--------ccCCCCCCceeeEEEEEeccchhhhhhhhheeEEEccCccc
Q 019924 146 HNEFTGVLLTGYLDNFKAMMHGNNISVEVDY--------MTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKF 217 (334)
Q Consensus 146 ~N~l~~~~~~~~~~~l~~L~~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l 217 (334)
+|.+.+..+.. +..+++|+.++...+.+.. +........+....+.+.++.+..+..+++|+.|+|++|++
T Consensus 434 ~n~l~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l 512 (606)
T 3t6q_A 434 HSLLDISSEQL-FDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRL 512 (606)
T ss_dssp TCCCBTTCTTT-TTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred CCccCCcCHHH-HhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCcc
Confidence 88887665533 5566666655554333221 12222333333333344455555666788888888888888
Q ss_pred ccCCchhhhCcCCCCeeeccCCccCCC
Q 019924 218 QGGIPEVVGKLNLLKGLNISHNNLTGL 244 (334)
Q Consensus 218 ~~~~p~~l~~l~~L~~L~Ls~N~l~~l 244 (334)
++..|+.+.+++.| .|++++|+++++
T Consensus 513 ~~~~~~~l~~l~~L-~L~L~~N~l~~~ 538 (606)
T 3t6q_A 513 TSSSIEALSHLKGI-YLNLASNHISII 538 (606)
T ss_dssp CGGGGGGGTTCCSC-EEECCSSCCCCC
T ss_pred CcCChhHhCccccc-EEECcCCccccc
Confidence 88888888888888 888888888753
No 23
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.93 E-value=1.1e-24 Score=194.12 Aligned_cols=231 Identities=18% Similarity=0.205 Sum_probs=159.7
Q ss_pred cccEEEcCCCCCCCCCCCCCCCCCeEECCCC-------------CCCCEEeCCCCcCccccCcCccCCCCccEEeCCCCc
Q 019924 8 TLYYLDLSNNFLTNIEYFPPTNMTQLNFDSN-------------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNR 74 (334)
Q Consensus 8 ~L~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n-------------~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~ 74 (334)
+++.++++++.++.++....+.++.|++++| ++|++|++++|++++..|..|..+++|++|++++|+
T Consensus 32 ~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 111 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 111 (330)
T ss_dssp ETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSC
T ss_pred CCeEEEecCCCccccCccCCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCc
Confidence 6778888888887766655667777887777 578899999999987778889999999999999998
Q ss_pred cccCCCccccCCCCCCEEEccCCcCCcCCChhhhcCCCCCEEEeecccCcc--cCCCCCCCCCCCCccEEEecCCccccc
Q 019924 75 LEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWG--PIGENTTIVPFPSLRIIDLSHNEFTGV 152 (334)
Q Consensus 75 l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~--~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 152 (334)
++ .+|..+. ++|++|++++|++++..+..+..+++|++|++++|.+.. ..+.. +..+++|+.|++++|.+++.
T Consensus 112 l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~--~~~l~~L~~L~l~~n~l~~l 186 (330)
T 1xku_A 112 LK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGA--FQGMKKLSYIRIADTNITTI 186 (330)
T ss_dssp CS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTG--GGGCTTCCEEECCSSCCCSC
T ss_pred CC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhh--ccCCCCcCEEECCCCccccC
Confidence 88 5565554 688889999888888777778888889999998888853 33333 37788888888888888754
Q ss_pred cchhhHHhHHhhhhcCCcccc--cccccCCCCCCceeeEEEEEeccchhhhhhhhheeEEEccCcccccCCchhhhCcCC
Q 019924 153 LLTGYLDNFKAMMHGNNISVE--VDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNL 230 (334)
Q Consensus 153 ~~~~~~~~l~~L~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~ 230 (334)
. .....+++.|...++.-.. ...+........+....+.+..+....+..+++|++|++++|+++ .+|..+..+++
T Consensus 187 ~-~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~ 264 (330)
T 1xku_A 187 P-QGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKY 264 (330)
T ss_dssp C-SSCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSS
T ss_pred C-ccccccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCC
Confidence 3 2323333333222221101 111222222223332223334444445566778888888888887 77777888888
Q ss_pred CCeeeccCCccCCCC
Q 019924 231 LKGLNISHNNLTGLC 245 (334)
Q Consensus 231 L~~L~Ls~N~l~~l~ 245 (334)
|+.|++++|+|+++.
T Consensus 265 L~~L~l~~N~i~~~~ 279 (330)
T 1xku_A 265 IQVVYLHNNNISAIG 279 (330)
T ss_dssp CCEEECCSSCCCCCC
T ss_pred cCEEECCCCcCCccC
Confidence 888888888887654
No 24
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.93 E-value=7.8e-25 Score=195.29 Aligned_cols=227 Identities=17% Similarity=0.165 Sum_probs=171.7
Q ss_pred cccEEEcCCCCCCCCCCCCCCCCCeEECCCC-------------CCCCEEeCCCCcCccccCcCccCCCCccEEeCCCCc
Q 019924 8 TLYYLDLSNNFLTNIEYFPPTNMTQLNFDSN-------------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNR 74 (334)
Q Consensus 8 ~L~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n-------------~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~ 74 (334)
+++.++++++.++.++....++++.|++++| ++|++|++++|++++..|..|..+++|++|++++|+
T Consensus 34 ~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 113 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNH 113 (332)
T ss_dssp ETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSC
T ss_pred cCCEEECCCCCccccCCCCCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCc
Confidence 6889999999998877766778889998888 678999999999998888999999999999999999
Q ss_pred cccCCCccccCCCCCCEEEccCCcCCcCCChhhhcCCCCCEEEeecccCcc--cCCCCCCCCCCCCccEEEecCCccccc
Q 019924 75 LEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWG--PIGENTTIVPFPSLRIIDLSHNEFTGV 152 (334)
Q Consensus 75 l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~--~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 152 (334)
++ .+|..+. ++|++|++++|++++..+..+..+++|++|++++|.++. ..+..+ ..+ +|+.|++++|.+++.
T Consensus 114 l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~--~~l-~L~~L~l~~n~l~~l 187 (332)
T 2ft3_A 114 LV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAF--DGL-KLNYLRISEAKLTGI 187 (332)
T ss_dssp CC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSS--CSC-CCSCCBCCSSBCSSC
T ss_pred CC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccc--cCC-ccCEEECcCCCCCcc
Confidence 98 5666554 799999999999998777788999999999999999853 344433 555 888999999988864
Q ss_pred cchhhHHhHHhhhhcCCcccccc-----cccCCCCCCceeeEEEEEeccchhhhhhhhheeEEEccCcccccCCchhhhC
Q 019924 153 LLTGYLDNFKAMMHGNNISVEVD-----YMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGK 227 (334)
Q Consensus 153 ~~~~~~~~l~~L~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~ 227 (334)
+.....+++ .++...+.+. .+........+....+.+..+....+..+++|+.|++++|+++ .+|..+..
T Consensus 188 -~~~~~~~L~---~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~ 262 (332)
T 2ft3_A 188 -PKDLPETLN---ELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPD 262 (332)
T ss_dssp -CSSSCSSCS---CCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGG
T ss_pred -CccccCCCC---EEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhc
Confidence 333333333 3333222221 2222333334444444455566666677888999999999998 78888888
Q ss_pred cCCCCeeeccCCccCCCC
Q 019924 228 LNLLKGLNISHNNLTGLC 245 (334)
Q Consensus 228 l~~L~~L~Ls~N~l~~l~ 245 (334)
+++|+.|++++|+++++.
T Consensus 263 l~~L~~L~l~~N~l~~~~ 280 (332)
T 2ft3_A 263 LKLLQVVYLHTNNITKVG 280 (332)
T ss_dssp CTTCCEEECCSSCCCBCC
T ss_pred CccCCEEECCCCCCCccC
Confidence 999999999999887654
No 25
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.93 E-value=2.9e-24 Score=184.02 Aligned_cols=181 Identities=20% Similarity=0.195 Sum_probs=156.8
Q ss_pred CcccEEEcCCCCCCCCCCCCCCCCCeEECCCCCCCCEEeCCCCcCccccCcCccCCCCccEEeCCCCccccCCCccccCC
Q 019924 7 ATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNC 86 (334)
Q Consensus 7 ~~L~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l 86 (334)
++.++++++++.++.++..-.++ ++.|++++|++++..+..|..+++|++|++++|++++..|..|.++
T Consensus 14 ~~~~~l~~~~~~l~~~p~~~~~~-----------l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 82 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVPSGIPAD-----------TEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDL 82 (251)
T ss_dssp GGGTEEECTTCCCSSCCSCCCTT-----------CCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTC
T ss_pred CCCeEEecCCCCccccCCCCCCC-----------CCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccC
Confidence 45789999999999877643333 3788999999998888899999999999999999998888889999
Q ss_pred CCCCEEEccCCcCCcCCChhhhcCCCCCEEEeecccCcccCCCCCCCCCCCCccEEEecCCccccccchhhHHhHHhhhh
Q 019924 87 HHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMH 166 (334)
Q Consensus 87 ~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~ 166 (334)
++|++|++++|++++..+..|..+++|++|++++|++++..+..+ ..+++|+.|++++|.+++..+.. +
T Consensus 83 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~Ls~N~l~~~~~~~-~-------- 151 (251)
T 3m19_A 83 TELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVF--DRLTKLKELRLNTNQLQSIPAGA-F-------- 151 (251)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT--TTCTTCCEEECCSSCCCCCCTTT-T--------
T ss_pred CcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHh--ccCCcccEEECcCCcCCccCHHH-c--------
Confidence 999999999999999888889999999999999999986655544 78999999999999998654422 1
Q ss_pred cCCcccccccccCCCCCCceeeEEEEEeccchhhhhhhhheeEEEccCcccccCCchhhhCcCCCCeeeccCCccCCC
Q 019924 167 GNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGL 244 (334)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~l 244 (334)
..+++|+.|+|++|++++..+..+..+++|+.|++++|++++.
T Consensus 152 -----------------------------------~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 152 -----------------------------------DKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp -----------------------------------TTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred -----------------------------------CcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 1267899999999999987788899999999999999999876
No 26
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.92 E-value=2.2e-25 Score=203.23 Aligned_cols=229 Identities=20% Similarity=0.148 Sum_probs=130.6
Q ss_pred cCCCcccEEEcCCCCCCCCCC---CCCCCCCeEECCCC-------------CCCCEEeCCCCcCccccCcCccCCCCccE
Q 019924 4 LGIATLYYLDLSNNFLTNIEY---FPPTNMTQLNFDSN-------------LTHKVLDMRMNNFNGKIPRKFVKSCNLTS 67 (334)
Q Consensus 4 ~~l~~L~~L~Ls~n~l~~~~~---~~~~~L~~L~l~~n-------------~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 67 (334)
..++++++|++++|.++.+++ ..+++|+.|++++| ++|++|++++|++++..|..|..+++|++
T Consensus 42 ~~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 121 (390)
T 3o6n_A 42 ITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV 121 (390)
T ss_dssp GGGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred cccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCE
Confidence 356788888888888887766 34667777777666 56777777777777666677777777777
Q ss_pred EeCCCCccccCCCccccCCCCCCEEEccCCcCCcCCChhhhcCCCCCEEEeecccCcccCCCCCCCCCCCCccEEEecCC
Q 019924 68 LNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHN 147 (334)
Q Consensus 68 L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N 147 (334)
|++++|+++...+..|.++++|++|++++|.+++..|..+..+++|++|++++|++++.. +..+++|+.|++++|
T Consensus 122 L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-----~~~l~~L~~L~l~~n 196 (390)
T 3o6n_A 122 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD-----LSLIPSLFHANVSYN 196 (390)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC-----GGGCTTCSEEECCSS
T ss_pred EECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc-----cccccccceeecccc
Confidence 777777777444444577777777777777777766666777777777777777775431 134455555555555
Q ss_pred ccccccchhhHHhHHhhhhcCCcccccccccCCCCCCceeeEEEEEeccc-hhhhhhhhheeEEEccCcccccCCchhhh
Q 019924 148 EFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGID-IKMERILTIFMTIDLSSNKFQGGIPEVVG 226 (334)
Q Consensus 148 ~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~ 226 (334)
.+++.... .. +..++.....+...+.. ....+..+.+..+.+. ...+..+++|++|++++|.+++..|..+.
T Consensus 197 ~l~~~~~~---~~---L~~L~l~~n~l~~~~~~-~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~ 269 (390)
T 3o6n_A 197 LLSTLAIP---IA---VEELDASHNSINVVRGP-VNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFV 269 (390)
T ss_dssp CCSEEECC---SS---CSEEECCSSCCCEEECC-CCSSCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGT
T ss_pred cccccCCC---Cc---ceEEECCCCeeeecccc-ccccccEEECCCCCCcccHHHcCCCCccEEECCCCcCCCcChhHcc
Confidence 54432111 11 11111111111111000 0011111111111111 12334455666666666666655566666
Q ss_pred CcCCCCeeeccCCccCCC
Q 019924 227 KLNLLKGLNISHNNLTGL 244 (334)
Q Consensus 227 ~l~~L~~L~Ls~N~l~~l 244 (334)
.+++|+.|++++|+++++
T Consensus 270 ~l~~L~~L~L~~n~l~~~ 287 (390)
T 3o6n_A 270 KMQRLERLYISNNRLVAL 287 (390)
T ss_dssp TCSSCCEEECCSSCCCEE
T ss_pred ccccCCEEECCCCcCccc
Confidence 666666666666666543
No 27
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.92 E-value=6.9e-26 Score=200.46 Aligned_cols=198 Identities=21% Similarity=0.306 Sum_probs=117.5
Q ss_pred CCEEeCCCCcCcc--ccCcCccCCCCccEEeCCC-CccccCCCccccCCCCCCEEEccCCcCCcCCChhhhcCCCCCEEE
Q 019924 41 HKVLDMRMNNFNG--KIPRKFVKSCNLTSLNLNG-NRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLI 117 (334)
Q Consensus 41 L~~L~Ls~N~l~~--~~p~~~~~l~~L~~L~L~~-n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ 117 (334)
++.|++++|.+++ .+|..|..+++|++|++++ |.+++.+|..|.++++|++|++++|.+++..|..+..+++|++|+
T Consensus 52 l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 131 (313)
T 1ogq_A 52 VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLD 131 (313)
T ss_dssp EEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEE
T ss_pred EEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEe
Confidence 3555666666655 5555566666666666653 555555555566666666666666666555555555666666666
Q ss_pred eecccCcccCCCCCCCCCCCCccEEEecCCccccccchhhHHhHH-hhhhcCCcccccc-----cccCCCCCCceeeEEE
Q 019924 118 LRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFK-AMMHGNNISVEVD-----YMTPLNSSNYYESIIL 191 (334)
Q Consensus 118 L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~-~L~~~~~~~~~~~-----~~~~~~~~~~l~~~~~ 191 (334)
+++|++++.+|..+ ..+++|++|++++|.+++.+|.. +..+. .|+.++...+.+. .+.... ...+....+
T Consensus 132 Ls~N~l~~~~p~~~--~~l~~L~~L~L~~N~l~~~~p~~-l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N 207 (313)
T 1ogq_A 132 FSYNALSGTLPPSI--SSLPNLVGITFDGNRISGAIPDS-YGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRN 207 (313)
T ss_dssp CCSSEEESCCCGGG--GGCTTCCEEECCSSCCEEECCGG-GGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSS
T ss_pred CCCCccCCcCChHH--hcCCCCCeEECcCCcccCcCCHH-HhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCC
Confidence 66666555555443 55556666666666655544433 22232 3333333222111 111111 223333333
Q ss_pred EEeccchhhhhhhhheeEEEccCcccccCCchhhhCcCCCCeeeccCCccCC
Q 019924 192 TIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTG 243 (334)
Q Consensus 192 ~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 243 (334)
.+.+.....+..+++|+.|+|++|.+++.+|. +..+++|++|++++|++++
T Consensus 208 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~ 258 (313)
T 1ogq_A 208 MLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYG 258 (313)
T ss_dssp EEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEE
T ss_pred cccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccC
Confidence 45555566677789999999999999976665 8889999999999999984
No 28
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.92 E-value=7.9e-25 Score=196.88 Aligned_cols=219 Identities=15% Similarity=0.097 Sum_probs=144.5
Q ss_pred CCCcccEEEcCCCCCCCCCCCCCCCCCeEECCCC-------------CCCCEEeCCCCcCccccCcCccCCCCccEEeCC
Q 019924 5 GIATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSN-------------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLN 71 (334)
Q Consensus 5 ~l~~L~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n-------------~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~ 71 (334)
.++.....+++++.++.++..-.++|+.|++++| ++|++|++++|++++..|..|.++++|++|+++
T Consensus 29 ~C~~~~~c~~~~~~l~~iP~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (353)
T 2z80_A 29 SCDRNGICKGSSGSLNSIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLS 108 (353)
T ss_dssp EECTTSEEECCSTTCSSCCTTCCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCCCCeEeeCCCCCcccccccccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECC
Confidence 3456667899999999887766677877777776 567777777777776666677777777777777
Q ss_pred CCccccCCCccccCCCCCCEEEccCCcCCcCCC-hhhhcCCCCCEEEeeccc-CcccCCCCCCCCCCCCccEEEecCCcc
Q 019924 72 GNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFP-NWLEILPELQVLILRSNR-FWGPIGENTTIVPFPSLRIIDLSHNEF 149 (334)
Q Consensus 72 ~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~-~~l~~l~~L~~L~L~~N~-l~~~~~~~~~~~~l~~L~~L~Ls~N~l 149 (334)
+|++++..+..+.++++|++|++++|++++..+ ..+..+++|++|++++|. +.+..+..+ ..+++|+.|++++|.+
T Consensus 109 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~--~~l~~L~~L~l~~n~l 186 (353)
T 2z80_A 109 YNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDF--AGLTFLEELEIDASDL 186 (353)
T ss_dssp SSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTT--TTCCEEEEEEEEETTC
T ss_pred CCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHc--cCCCCCCEEECCCCCc
Confidence 777774444446777777777777777776433 366677777777777773 443334433 6677777777777777
Q ss_pred ccccchhhHHhHHhhhhcCCcccccccccCCCCCCceeeEEEEEeccchhhhhhhhheeEEEccCcccccC---------
Q 019924 150 TGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGG--------- 220 (334)
Q Consensus 150 ~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~--------- 220 (334)
.+..+.. +..+++|+.++. ....+..++......+++|+.|++++|.+++.
T Consensus 187 ~~~~~~~-l~~l~~L~~L~l-------------------~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~ 246 (353)
T 2z80_A 187 QSYEPKS-LKSIQNVSHLIL-------------------HMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGE 246 (353)
T ss_dssp CEECTTT-TTTCSEEEEEEE-------------------ECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------
T ss_pred CccCHHH-HhccccCCeecC-------------------CCCccccchhhhhhhcccccEEECCCCcccccccccccccc
Confidence 6654432 333333322221 11111222333344567788888888877753
Q ss_pred ----------------------CchhhhCcCCCCeeeccCCccCCCC
Q 019924 221 ----------------------IPEVVGKLNLLKGLNISHNNLTGLC 245 (334)
Q Consensus 221 ----------------------~p~~l~~l~~L~~L~Ls~N~l~~l~ 245 (334)
+|+.+..+++|+.|++++|+++.+.
T Consensus 247 ~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~ 293 (353)
T 2z80_A 247 TNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVP 293 (353)
T ss_dssp CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCC
T ss_pred ccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccC
Confidence 4566788999999999999988554
No 29
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.92 E-value=4e-25 Score=213.68 Aligned_cols=146 Identities=23% Similarity=0.213 Sum_probs=110.7
Q ss_pred CCCcccEEEcCCCCCCCCCC---CCCCCCCeEECCCC---------------------CCCCEEeCCCCcCccccCc--C
Q 019924 5 GIATLYYLDLSNNFLTNIEY---FPPTNMTQLNFDSN---------------------LTHKVLDMRMNNFNGKIPR--K 58 (334)
Q Consensus 5 ~l~~L~~L~Ls~n~l~~~~~---~~~~~L~~L~l~~n---------------------~~L~~L~Ls~N~l~~~~p~--~ 58 (334)
++++|++|++++|.+.+..| ..+++|+.|++++| ++|++|++++|+++ .+|. .
T Consensus 247 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~ 325 (636)
T 4eco_A 247 NLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETS 325 (636)
T ss_dssp GCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHH
T ss_pred ccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhh
Confidence 68999999999999888777 56778899999888 47899999999998 7887 8
Q ss_pred ccCCCCccEEeCCCCccccCCCccccCCCCCCEEEccCCcCCcCCChhhhcCCC-CCEEEeecccCcccCCCCCCCCCCC
Q 019924 59 FVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPE-LQVLILRSNRFWGPIGENTTIVPFP 137 (334)
Q Consensus 59 ~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~-L~~L~L~~N~l~~~~~~~~~~~~l~ 137 (334)
++.+++|++|++++|++++.+| .+.++++|++|++++|+++. +|..+..+++ |++|++++|+++ .+|..+....++
T Consensus 326 l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~~-lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~ 402 (636)
T 4eco_A 326 LQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITE-IPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVS 402 (636)
T ss_dssp HTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEEE-CCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSS
T ss_pred hccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCcccc-ccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccC
Confidence 8899999999999999887777 77777778888888877773 6666777777 777777777775 455544222233
Q ss_pred CccEEEecCCccccccc
Q 019924 138 SLRIIDLSHNEFTGVLL 154 (334)
Q Consensus 138 ~L~~L~Ls~N~l~~~~~ 154 (334)
+|+.|++++|.+++..|
T Consensus 403 ~L~~L~Ls~N~l~~~~p 419 (636)
T 4eco_A 403 VMSAIDFSYNEIGSVDG 419 (636)
T ss_dssp CEEEEECCSSCTTTTTT
T ss_pred ccCEEECcCCcCCCcch
Confidence 56666666666555443
No 30
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.92 E-value=4.7e-24 Score=198.14 Aligned_cols=213 Identities=19% Similarity=0.105 Sum_probs=148.8
Q ss_pred ccEEEcCCCCCCCCCCCCCCCCCeEECCCC-------------CCCCEEeCCCCcCccccCcCccCCCCccEEeCCCCcc
Q 019924 9 LYYLDLSNNFLTNIEYFPPTNMTQLNFDSN-------------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRL 75 (334)
Q Consensus 9 L~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n-------------~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l 75 (334)
...++.+++.++.++..-.++++.|++++| ++|++|+|++|++++..|..|.++++|++|+|++|++
T Consensus 56 ~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l 135 (452)
T 3zyi_A 56 FSKVVCTRRGLSEVPQGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWL 135 (452)
T ss_dssp SCEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred CcEEEECCCCcCccCCCCCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcC
Confidence 467888999898877766677777777776 5677777777777766667777777777777777777
Q ss_pred ccCCCccccCCCCCCEEEccCCcCCcCCChhhhcCCCCCEEEeecccCcccCCCCCCCCCCCCccEEEecCCccccccch
Q 019924 76 EGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLT 155 (334)
Q Consensus 76 ~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 155 (334)
+...+..|.++++|++|++++|+++...+..|..+++|++|++++|...+.++.. .+..+++|+.|++++|.+++...
T Consensus 136 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~-~~~~l~~L~~L~L~~n~l~~~~~- 213 (452)
T 3zyi_A 136 TVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEG-AFEGLFNLKYLNLGMCNIKDMPN- 213 (452)
T ss_dssp SBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTT-TTTTCTTCCEEECTTSCCSSCCC-
T ss_pred CccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChh-hccCCCCCCEEECCCCccccccc-
Confidence 7555556777777777777777777665666777777777777774433333332 23667777777777777765422
Q ss_pred hhHHhHHhhhhcCCcccccccccCCCCCCceeeEEEEEeccchhhhhhhhheeEEEccCcccccCCchhhhCcCCCCeee
Q 019924 156 GYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLN 235 (334)
Q Consensus 156 ~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 235 (334)
+..+.+|..++. ..+.+.++....+..+++|+.|+|++|++++..|..|..+++|+.|+
T Consensus 214 --~~~l~~L~~L~L-------------------s~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 272 (452)
T 3zyi_A 214 --LTPLVGLEELEM-------------------SGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELN 272 (452)
T ss_dssp --CTTCTTCCEEEC-------------------TTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred --ccccccccEEEC-------------------cCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEE
Confidence 222233322222 11223344556667789999999999999988899999999999999
Q ss_pred ccCCccCCC
Q 019924 236 ISHNNLTGL 244 (334)
Q Consensus 236 Ls~N~l~~l 244 (334)
|++|+++++
T Consensus 273 L~~N~l~~~ 281 (452)
T 3zyi_A 273 LAHNNLSSL 281 (452)
T ss_dssp CCSSCCSCC
T ss_pred CCCCcCCcc
Confidence 999999854
No 31
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.92 E-value=6e-24 Score=189.34 Aligned_cols=237 Identities=15% Similarity=0.105 Sum_probs=143.7
Q ss_pred CcccEEEcCCCCCCCCCC---CCCCCCCeEECCCC-------------CCCCEEeCCCCcCccccCcCccCCCCccEEeC
Q 019924 7 ATLYYLDLSNNFLTNIEY---FPPTNMTQLNFDSN-------------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNL 70 (334)
Q Consensus 7 ~~L~~L~Ls~n~l~~~~~---~~~~~L~~L~l~~n-------------~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 70 (334)
+++++|++++|.++++++ ..+++|++|++++| ++|++|++++|+++ .+|..+. ++|++|++
T Consensus 52 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~--~~L~~L~l 128 (330)
T 1xku_A 52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMP--KTLQELRV 128 (330)
T ss_dssp TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSCC--TTCCEEEC
T ss_pred CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCC-ccChhhc--ccccEEEC
Confidence 456777777777776655 44566777777766 46677777777776 4444443 56777777
Q ss_pred CCCccccCCCccccCCCCCCEEEccCCcCCc--CCChhhhcCCCCCEEEeecccCcccCCCCCCCCCCCCccEEEecCCc
Q 019924 71 NGNRLEGPLPPSLVNCHHLEVLNVGNNQIND--NFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNE 148 (334)
Q Consensus 71 ~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~--~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~ 148 (334)
++|++++..+..+.++++|++|++++|.+.. ..+..+..+++|++|++++|+++. ++... .++|+.|++++|.
T Consensus 129 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~-l~~~~----~~~L~~L~l~~n~ 203 (330)
T 1xku_A 129 HENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQGL----PPSLTELHLDGNK 203 (330)
T ss_dssp CSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-CCSSC----CTTCSEEECTTSC
T ss_pred CCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc-CCccc----cccCCEEECCCCc
Confidence 7777775555566777777777777777643 455666677777777777776643 33322 2566677777776
Q ss_pred cccccchhhHHhHHhhhhcCCcccccccc-----cCCCCCCceeeEEEEEeccchhhhhhhhheeEEEccCcccccCCch
Q 019924 149 FTGVLLTGYLDNFKAMMHGNNISVEVDYM-----TPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPE 223 (334)
Q Consensus 149 l~~~~~~~~~~~l~~L~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~ 223 (334)
+++..+.. +..+++|+.++...+.+... ........+....+.+..++. .+..+++|++|++++|++++..+.
T Consensus 204 l~~~~~~~-~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~-~l~~l~~L~~L~l~~N~i~~~~~~ 281 (330)
T 1xku_A 204 ITKVDAAS-LKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPG-GLADHKYIQVVYLHNNNISAIGSN 281 (330)
T ss_dssp CCEECTGG-GTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCT-TTTTCSSCCEEECCSSCCCCCCTT
T ss_pred CCccCHHH-hcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccCCh-hhccCCCcCEEECCCCcCCccChh
Confidence 66554322 44555555444433322221 111222222222222333332 234578999999999999977666
Q ss_pred hhhC------cCCCCeeeccCCccCCCCCCCccCCC
Q 019924 224 VVGK------LNLLKGLNISHNNLTGLCGFPLLESC 253 (334)
Q Consensus 224 ~l~~------l~~L~~L~Ls~N~l~~l~~~~~~~~c 253 (334)
.|.. .+.++.|++++|++...+..|....|
T Consensus 282 ~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~ 317 (330)
T 1xku_A 282 DFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRC 317 (330)
T ss_dssp SSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTT
T ss_pred hcCCcccccccccccceEeecCcccccccCcccccc
Confidence 6643 47889999999998765544433333
No 32
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.92 E-value=7.8e-25 Score=210.64 Aligned_cols=239 Identities=14% Similarity=0.117 Sum_probs=147.4
Q ss_pred CCCcccEEEcCCCCCCCCCCCCCCCCCeEECCCC-----------CCCCEEeCCCCcCccc--cCcCccCCCCccEEeCC
Q 019924 5 GIATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSN-----------LTHKVLDMRMNNFNGK--IPRKFVKSCNLTSLNLN 71 (334)
Q Consensus 5 ~l~~L~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n-----------~~L~~L~Ls~N~l~~~--~p~~~~~l~~L~~L~L~ 71 (334)
.+++|++|++++|.++.++...+++|+.|++++| ++|++|++++|++++. .|..+..+++|++|+++
T Consensus 305 ~~~~L~~L~l~~n~l~~lp~~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~ 384 (606)
T 3vq2_A 305 KHFKWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLS 384 (606)
T ss_dssp TTCCCSEEEEESCCCSSCCCCCCSSCCEEEEESCSSCEECCCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECC
T ss_pred ccccCCEEEcccccCcccccCCCCccceeeccCCcCccchhhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECC
Confidence 4456777777777775544345666777777766 5777777777777754 36667777777777777
Q ss_pred CCccccCCCccccCCCCCCEEEccCCcCCcCCC-hhhhcCCCCCEEEeecccCcccCCCCCCCCCCCCccEEEecCCccc
Q 019924 72 GNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFP-NWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFT 150 (334)
Q Consensus 72 ~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~-~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~ 150 (334)
+|.+++ +|..+.++++|++|++++|++.+..| ..+..+++|++|++++|++++..+..+ ..+++|+.|++++|.++
T Consensus 385 ~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~n~l~ 461 (606)
T 3vq2_A 385 FNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIF--LGLTSLNTLKMAGNSFK 461 (606)
T ss_dssp SCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTT--TTCTTCCEEECTTCEEG
T ss_pred CCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhh--cCCCCCCEEECCCCcCC
Confidence 777763 55667777777777777777776655 566777777777777777766666554 67777777777777777
Q ss_pred cccchhhHHhHHhhhhcCCcccccccc-----cCCCCCCceeeEEEEEeccchhhhhhhhheeEEEccCcccccCCchhh
Q 019924 151 GVLLTGYLDNFKAMMHGNNISVEVDYM-----TPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVV 225 (334)
Q Consensus 151 ~~~~~~~~~~l~~L~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l 225 (334)
+......+..+++|+.++...+.+... ........+....+.+.++.+..+..+++|+.|++++|+++ .+|..+
T Consensus 462 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~ 540 (606)
T 3vq2_A 462 DNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGIL 540 (606)
T ss_dssp GGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCG
T ss_pred CcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhH
Confidence 632223355555555554433322211 11112222222222233333444455666667777777666 555556
Q ss_pred hCcC-CCCeeeccCCccCCCCCC
Q 019924 226 GKLN-LLKGLNISHNNLTGLCGF 247 (334)
Q Consensus 226 ~~l~-~L~~L~Ls~N~l~~l~~~ 247 (334)
..++ +|+.|++++|++.+.|..
T Consensus 541 ~~l~~~L~~l~l~~N~~~c~c~~ 563 (606)
T 3vq2_A 541 QHFPKSLAFFNLTNNSVACICEH 563 (606)
T ss_dssp GGSCTTCCEEECCSCCCCCSSTT
T ss_pred hhhcccCcEEEccCCCcccCCcc
Confidence 6665 467777777766665543
No 33
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.92 E-value=4.6e-24 Score=194.43 Aligned_cols=228 Identities=18% Similarity=0.226 Sum_probs=146.1
Q ss_pred CCCcccEEEcCCCCCCCCCC---CCCCCCCeEECCCC-------------CCCCEEeCCCCcCccccCcCccCCCCccEE
Q 019924 5 GIATLYYLDLSNNFLTNIEY---FPPTNMTQLNFDSN-------------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSL 68 (334)
Q Consensus 5 ~l~~L~~L~Ls~n~l~~~~~---~~~~~L~~L~l~~n-------------~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 68 (334)
++++|++|++++|.++++++ ..+++|++|++++| ++|++|++++|+++...+..|..+++|++|
T Consensus 67 ~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L 146 (390)
T 3o6n_A 67 SFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTL 146 (390)
T ss_dssp HCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred ccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEE
Confidence 57899999999999988776 56788999999988 679999999999996555567999999999
Q ss_pred eCCCCccccCCCccccCCCCCCEEEccCCcCCcCCChhhhcCCCCCEEEeecccCccc------------------CCCC
Q 019924 69 NLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGP------------------IGEN 130 (334)
Q Consensus 69 ~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~------------------~~~~ 130 (334)
++++|++++..|..+.++++|++|++++|++++.. +..+++|+.|++++|.+++. ++.
T Consensus 147 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~---~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~- 222 (390)
T 3o6n_A 147 SMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRG- 222 (390)
T ss_dssp ECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC---GGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEEC-
T ss_pred ECCCCccCccChhhccCCCCCCEEECCCCcCCccc---cccccccceeecccccccccCCCCcceEEECCCCeeeeccc-
Confidence 99999999888888999999999999999998753 33445554444444443221 111
Q ss_pred CCCCCCCCccEEEecCCccccccchhhHHhHHhhhhcCCcccccccc-----cCCCCCCceeeEEEEEeccchhhhhhhh
Q 019924 131 TTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYM-----TPLNSSNYYESIILTIKGIDIKMERILT 205 (334)
Q Consensus 131 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~~~~~~l~ 205 (334)
...++|+.|++++|.+++. ..+..+++|..++...+.+... ........+....+.+..++.. ...++
T Consensus 223 ---~~~~~L~~L~l~~n~l~~~---~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~l~ 295 (390)
T 3o6n_A 223 ---PVNVELTILKLQHNNLTDT---AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLY-GQPIP 295 (390)
T ss_dssp ---CCCSSCCEEECCSSCCCCC---GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEEECS-SSCCT
T ss_pred ---cccccccEEECCCCCCccc---HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcccCcc-cCCCC
Confidence 1234566666666666654 2244444444444432222111 1111111111111112222111 12356
Q ss_pred heeEEEccCcccccCCchhhhCcCCCCeeeccCCccCCC
Q 019924 206 IFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGL 244 (334)
Q Consensus 206 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~l 244 (334)
+|+.|++++|+++ .+|..+..+++|+.|++++|+++++
T Consensus 296 ~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~ 333 (390)
T 3o6n_A 296 TLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL 333 (390)
T ss_dssp TCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC
T ss_pred CCCEEECCCCcce-ecCccccccCcCCEEECCCCcccee
Confidence 6777777777776 5566666677777777777776654
No 34
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.92 E-value=2.8e-24 Score=209.48 Aligned_cols=242 Identities=19% Similarity=0.216 Sum_probs=159.0
Q ss_pred cCCCcccEEEcCCCCCCCC--CCC-----CCCCCCeEECCCC-------------CCCCEEeCCCCcCccccC-cCccCC
Q 019924 4 LGIATLYYLDLSNNFLTNI--EYF-----PPTNMTQLNFDSN-------------LTHKVLDMRMNNFNGKIP-RKFVKS 62 (334)
Q Consensus 4 ~~l~~L~~L~Ls~n~l~~~--~~~-----~~~~L~~L~l~~n-------------~~L~~L~Ls~N~l~~~~p-~~~~~l 62 (334)
.++++|++|++++|.++.. +.. ..++|+.|++++| ++|++|++++|++++.+| ..|.++
T Consensus 350 ~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l 429 (680)
T 1ziw_A 350 TGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGL 429 (680)
T ss_dssp TTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTC
T ss_pred ccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCc
Confidence 3567777777777764322 111 1246677777666 567777777777765544 567777
Q ss_pred CCccEEeCCCCccccCCCccccCCCCCCEEEccCCcCC--cCCChhhhcCCCCCEEEeecccCcccCCCCCCCCCCCCcc
Q 019924 63 CNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQIN--DNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLR 140 (334)
Q Consensus 63 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~--~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~ 140 (334)
++|++|++++|++++..+..|..+++|+.|++++|.+. +..|..+..+++|++|++++|++++..+..+ ..+++|+
T Consensus 430 ~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~--~~l~~L~ 507 (680)
T 1ziw_A 430 ENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDML--EGLEKLE 507 (680)
T ss_dssp TTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTT--TTCTTCC
T ss_pred ccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhh--ccccccC
Confidence 77777777777777666667777777777777777665 3456666777777777777777765444433 6667777
Q ss_pred EEEecCCccccccch-------hhHHhHHhhhhcCCccccccccc-----CCCCCCceeeEEEEEeccchhhhhhhhhee
Q 019924 141 IIDLSHNEFTGVLLT-------GYLDNFKAMMHGNNISVEVDYMT-----PLNSSNYYESIILTIKGIDIKMERILTIFM 208 (334)
Q Consensus 141 ~L~Ls~N~l~~~~~~-------~~~~~l~~L~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~ 208 (334)
.|++++|.+++.... ..+..+++|+.++...+.+..++ .......+....+.+..++...+..+++|+
T Consensus 508 ~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~ 587 (680)
T 1ziw_A 508 ILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLK 587 (680)
T ss_dssp EEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred EEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCC
Confidence 777777776654211 12444555554444333332222 222223333333345566667777789999
Q ss_pred EEEccCcccccCCchhhh-CcCCCCeeeccCCccCCCCCC
Q 019924 209 TIDLSSNKFQGGIPEVVG-KLNLLKGLNISHNNLTGLCGF 247 (334)
Q Consensus 209 ~L~Ls~N~l~~~~p~~l~-~l~~L~~L~Ls~N~l~~l~~~ 247 (334)
.|+|++|++++..|..+. .+++|+.|++++|++.+-|..
T Consensus 588 ~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~ 627 (680)
T 1ziw_A 588 SLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCES 627 (680)
T ss_dssp EEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCC
T ss_pred EEECCCCcCCccChhHhcccccccCEEEccCCCcccCCcc
Confidence 999999999988888887 789999999999999988874
No 35
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.91 E-value=5.4e-24 Score=197.10 Aligned_cols=223 Identities=18% Similarity=0.127 Sum_probs=180.2
Q ss_pred ccEEEcCCCCCCCCCCCCCCCCCeEECCCCCCCCEEeCCCCcCccccCcCccCCCCccEEeCCCCccccCCCccccCCCC
Q 019924 9 LYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHH 88 (334)
Q Consensus 9 L~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~ 88 (334)
.+.++.+++.++.++..-.+ ++++|+|++|++++..+..|.++++|++|++++|++++..+..|.++++
T Consensus 45 ~~~v~c~~~~l~~iP~~~~~-----------~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~ 113 (440)
T 3zyj_A 45 FSKVICVRKNLREVPDGIST-----------NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLAN 113 (440)
T ss_dssp SCEEECCSCCCSSCCSCCCT-----------TCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSS
T ss_pred CCEEEeCCCCcCcCCCCCCC-----------CCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCcc
Confidence 45677777777766553333 3478899999999888899999999999999999999888889999999
Q ss_pred CCEEEccCCcCCcCCChhhhcCCCCCEEEeecccCcccCCCCCCCCCCCCccEEEecCCccccccchhhHHhHHhhhhcC
Q 019924 89 LEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGN 168 (334)
Q Consensus 89 L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~~~ 168 (334)
|++|++++|+++...+..|..+++|++|++++|++++..+..+ ..+++|+.|++++|...+.++...+.++++|+.++
T Consensus 114 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~--~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~ 191 (440)
T 3zyj_A 114 LNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAF--NRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLN 191 (440)
T ss_dssp CCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTT--TTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEE
T ss_pred CCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHh--hhCcccCEeCCCCCCCcceeCcchhhcccccCeec
Confidence 9999999999999777789999999999999999976655545 88999999999996655566666677888887777
Q ss_pred CcccccccccCCCCCCceeeEEE---EEeccchhhhhhhhheeEEEccCcccccCCchhhhCcCCCCeeeccCCccCCC
Q 019924 169 NISVEVDYMTPLNSSNYYESIIL---TIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGL 244 (334)
Q Consensus 169 ~~~~~~~~~~~~~~~~~l~~~~~---~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~l 244 (334)
...+.+..++.......++.+++ .+..+....+..+++|+.|+|++|++++..+..|.++++|+.|+|++|+++++
T Consensus 192 L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 270 (440)
T 3zyj_A 192 LAMCNLREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLL 270 (440)
T ss_dssp CTTSCCSSCCCCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCC
T ss_pred CCCCcCccccccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCcc
Confidence 65555555544444344444443 44455566777899999999999999988899999999999999999999853
No 36
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.91 E-value=1.8e-24 Score=206.34 Aligned_cols=136 Identities=16% Similarity=0.158 Sum_probs=93.2
Q ss_pred hcCCCCCEEEeecccCcccCCCCCCCCCCCCccEEEecCCccccccc-hhhHHhHHhhhhcCCccccccc-ccC--CCCC
Q 019924 108 EILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLL-TGYLDNFKAMMHGNNISVEVDY-MTP--LNSS 183 (334)
Q Consensus 108 ~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~~l~~L~~~~~~~~~~~~-~~~--~~~~ 183 (334)
..+++|++|++++|++++..+..+ ..+++|+.|++++|++++... ...+..+++|+.++...+.+.. ++. ....
T Consensus 350 ~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l 427 (562)
T 3a79_B 350 PSPSSFTFLNFTQNVFTDSVFQGC--STLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWA 427 (562)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTC--CSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCC
T ss_pred cCCCCceEEECCCCccccchhhhh--cccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCc
Confidence 567889999999999988777766 888999999999999987532 1235666666666554444333 221 1223
Q ss_pred CceeeEEEEEeccchhhhhhh-hheeEEEccCcccccCCchhhhCcCCCCeeeccCCccCCCCC
Q 019924 184 NYYESIILTIKGIDIKMERIL-TIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGLCG 246 (334)
Q Consensus 184 ~~l~~~~~~~~~~~~~~~~~l-~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~l~~ 246 (334)
..++.+.+..+.+....+..+ ++|+.|+|++|+++ .+|..+..+++|+.|++++|+++++..
T Consensus 428 ~~L~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~ 490 (562)
T 3a79_B 428 ESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPD 490 (562)
T ss_dssp TTCCEEECCSSCCCGGGGSSCCTTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCCCCT
T ss_pred ccCCEEECCCCCCCcchhhhhcCcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCCCCH
Confidence 344455555555544444444 58888888888887 677777788888888888888876543
No 37
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.91 E-value=4.6e-24 Score=191.30 Aligned_cols=228 Identities=19% Similarity=0.236 Sum_probs=162.7
Q ss_pred CCCcccEEEcCCCCCCCCCC-CCCCCCCeEECCCC-----------CCCCEEeCCCCcCccccCcCccCCCCccEEeCCC
Q 019924 5 GIATLYYLDLSNNFLTNIEY-FPPTNMTQLNFDSN-----------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNG 72 (334)
Q Consensus 5 ~l~~L~~L~Ls~n~l~~~~~-~~~~~L~~L~l~~n-----------~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~ 72 (334)
++++|++|++++|.+++++. ..+++|++|++++| ++|++|++++|.....++ .+..+++|++|++++
T Consensus 86 ~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~ 164 (347)
T 4fmz_A 86 NLVKLTNLYIGTNKITDISALQNLTNLRELYLNEDNISDISPLANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTE 164 (347)
T ss_dssp TCTTCCEEECCSSCCCCCGGGTTCTTCSEEECTTSCCCCCGGGTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCS
T ss_pred cCCcCCEEEccCCcccCchHHcCCCcCCEEECcCCcccCchhhccCCceeEEECCCCCCccccc-chhhCCCCcEEEecC
Confidence 57888999999998887654 67788888888888 678888888886654433 478888888888888
Q ss_pred CccccCCCccccCCCCCCEEEccCCcCCcCCChhhhcCCCCCEEEeecccCcccCCCCCCCCCCCCccEEEecCCccccc
Q 019924 73 NRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGV 152 (334)
Q Consensus 73 n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 152 (334)
|.+++..+ +..+++|++|++++|.+.+.. . +..+++|+.|++++|.+++..+ +..+++|+.|++++|.+++.
T Consensus 165 ~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~-~-~~~l~~L~~L~l~~n~l~~~~~----~~~~~~L~~L~l~~n~l~~~ 236 (347)
T 4fmz_A 165 SKVKDVTP--IANLTDLYSLSLNYNQIEDIS-P-LASLTSLHYFTAYVNQITDITP----VANMTRLNSLKIGNNKITDL 236 (347)
T ss_dssp SCCCCCGG--GGGCTTCSEEECTTSCCCCCG-G-GGGCTTCCEEECCSSCCCCCGG----GGGCTTCCEEECCSSCCCCC
T ss_pred CCcCCchh--hccCCCCCEEEccCCcccccc-c-ccCCCccceeecccCCCCCCch----hhcCCcCCEEEccCCccCCC
Confidence 88874432 778888888888888887743 3 7778888888888888754433 36677888888888887765
Q ss_pred cchhhHHhHHhhhhcCCcccccccccCCCCCCceeeEEE---EEeccchhhhhhhhheeEEEccCcccccCCchhhhCcC
Q 019924 153 LLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIIL---TIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLN 229 (334)
Q Consensus 153 ~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~ 229 (334)
.+ +..+++|+.++...+.+..+........++.+.+ .+..+ ..+..+++|+.|++++|.+++..|..+..++
T Consensus 237 ~~---~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~ 311 (347)
T 4fmz_A 237 SP---LANLSQLTWLEIGTNQISDINAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLT 311 (347)
T ss_dssp GG---GTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCT
T ss_pred cc---hhcCCCCCEEECCCCccCCChhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccc
Confidence 44 4455555544443333322222222222333332 23333 3456688999999999999988889999999
Q ss_pred CCCeeeccCCccCCCCC
Q 019924 230 LLKGLNISHNNLTGLCG 246 (334)
Q Consensus 230 ~L~~L~Ls~N~l~~l~~ 246 (334)
+|+.|++++|+++++..
T Consensus 312 ~L~~L~L~~n~l~~~~~ 328 (347)
T 4fmz_A 312 NLTTLFLSQNHITDIRP 328 (347)
T ss_dssp TCSEEECCSSSCCCCGG
T ss_pred cCCEEEccCCccccccC
Confidence 99999999999987644
No 38
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.91 E-value=4.9e-24 Score=201.45 Aligned_cols=39 Identities=38% Similarity=0.567 Sum_probs=23.8
Q ss_pred hheeEEEccCcccccCCchhhhCcCCCCeeeccCCccCCC
Q 019924 205 TIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGL 244 (334)
Q Consensus 205 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~l 244 (334)
++|+.|++++|+++ .+|..+..+++|+.|++++|+++++
T Consensus 421 ~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l 459 (520)
T 2z7x_B 421 PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSV 459 (520)
T ss_dssp TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCC
T ss_pred ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCcc
Confidence 45666666666665 5555555666666666666666543
No 39
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.91 E-value=2.6e-24 Score=204.60 Aligned_cols=125 Identities=23% Similarity=0.199 Sum_probs=94.3
Q ss_pred CcccEEEcCCCCCCCCCC---CCCCCCCeEECCCC-------------CCCCEEeCCCCcCccccCcCccCCCCccEEeC
Q 019924 7 ATLYYLDLSNNFLTNIEY---FPPTNMTQLNFDSN-------------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNL 70 (334)
Q Consensus 7 ~~L~~L~Ls~n~l~~~~~---~~~~~L~~L~l~~n-------------~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 70 (334)
++|++|++++|.++++++ ..+++|++|++++| ++|++|++++|++++..|..|+++++|++|++
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 105 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNL 105 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEEC
T ss_pred CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEEC
Confidence 578888888888887765 55677888888877 57888888888888776667888888888888
Q ss_pred CCCccccC-CCccccCCCCCCEEEccCCc-CCcCCChhhhcCCCCCEEEeecccCcccCCCCC
Q 019924 71 NGNRLEGP-LPPSLVNCHHLEVLNVGNNQ-INDNFPNWLEILPELQVLILRSNRFWGPIGENT 131 (334)
Q Consensus 71 ~~n~l~~~-~p~~l~~l~~L~~L~Ls~N~-l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~ 131 (334)
++|++++. .|..+.++++|++|++++|. ++...+..+..+++|++|++++|++++..+..+
T Consensus 106 s~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l 168 (549)
T 2z81_A 106 MGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSL 168 (549)
T ss_dssp TTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTT
T ss_pred CCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhh
Confidence 88888752 45677888888888888887 444334567778888888888888776665544
No 40
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.91 E-value=1.8e-23 Score=181.20 Aligned_cols=183 Identities=19% Similarity=0.169 Sum_probs=144.8
Q ss_pred CCCcccEEEcCCCCCCCCCCCCCCCCCeEECCCCCCCCEEeCCCCcCccccCcCccCCCCccEEeCCCCccccCCCcccc
Q 019924 5 GIATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLV 84 (334)
Q Consensus 5 ~l~~L~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~ 84 (334)
.+++|+.|++++|.++.... +..+ ++|++|++++|++++. ..+..+++|++|++++|++++..+..+.
T Consensus 39 ~l~~L~~L~l~~~~i~~~~~--l~~l--------~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~ 106 (272)
T 3rfs_A 39 ELNSIDQIIANNSDIKSVQG--IQYL--------PNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFD 106 (272)
T ss_dssp HHTTCCEEECTTSCCCCCTT--GGGC--------TTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTT
T ss_pred cccceeeeeeCCCCcccccc--cccC--------CCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhc
Confidence 45788889999888876542 2222 4458888888888853 4788889999999999999877777788
Q ss_pred CCCCCCEEEccCCcCCcCCChhhhcCCCCCEEEeecccCcccCCCCCCCCCCCCccEEEecCCccccccchhhHHhHHhh
Q 019924 85 NCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAM 164 (334)
Q Consensus 85 ~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L 164 (334)
++++|++|++++|++++..+..+..+++|++|++++|++++..+..+ ..+++|+.|++++|.+++..+.. +
T Consensus 107 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~L~l~~n~l~~~~~~~-~------ 177 (272)
T 3rfs_A 107 KLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVF--DKLTNLTELDLSYNQLQSLPEGV-F------ 177 (272)
T ss_dssp TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT--TTCTTCCEEECCSSCCCCCCTTT-T------
T ss_pred CCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHh--ccCccCCEEECCCCCcCccCHHH-h------
Confidence 89999999999999988777778889999999999999876655544 77889999999999888654321 1
Q ss_pred hhcCCcccccccccCCCCCCceeeEEEEEeccchhhhhhhhheeEEEccCcccccCCchhhhCcCCCCeeeccCCccCCC
Q 019924 165 MHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGL 244 (334)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~l 244 (334)
..+++|+.|++++|++++..|..+..+++|+.|++++|++++.
T Consensus 178 -------------------------------------~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 220 (272)
T 3rfs_A 178 -------------------------------------DKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT 220 (272)
T ss_dssp -------------------------------------TTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred -------------------------------------cCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcccc
Confidence 1257788999999999887777788899999999999988765
Q ss_pred C
Q 019924 245 C 245 (334)
Q Consensus 245 ~ 245 (334)
|
T Consensus 221 ~ 221 (272)
T 3rfs_A 221 C 221 (272)
T ss_dssp T
T ss_pred C
Confidence 4
No 41
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.91 E-value=9.2e-25 Score=209.76 Aligned_cols=229 Identities=20% Similarity=0.146 Sum_probs=126.7
Q ss_pred cCCCcccEEEcCCCCCCCCCC---CCCCCCCeEECCCC-------------CCCCEEeCCCCcCccccCcCccCCCCccE
Q 019924 4 LGIATLYYLDLSNNFLTNIEY---FPPTNMTQLNFDSN-------------LTHKVLDMRMNNFNGKIPRKFVKSCNLTS 67 (334)
Q Consensus 4 ~~l~~L~~L~Ls~n~l~~~~~---~~~~~L~~L~l~~n-------------~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 67 (334)
..+++++.+++++|.++.+++ ..+++|+.|++++| ++|++|+|++|.+++..|..|+++++|++
T Consensus 48 l~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 127 (597)
T 3oja_B 48 ITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV 127 (597)
T ss_dssp GGGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred ccCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCE
Confidence 345778888888888887776 34556666665555 35566666666666655556666666666
Q ss_pred EeCCCCccccCCCccccCCCCCCEEEccCCcCCcCCChhhhcCCCCCEEEeecccCcccCCCCCCCCCCCCccEEEecCC
Q 019924 68 LNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHN 147 (334)
Q Consensus 68 L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N 147 (334)
|++++|.+++..+..|.++++|++|++++|.+++..|..|+.+++|++|++++|.+++.. +..+++|+.|++++|
T Consensus 128 L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-----~~~l~~L~~L~l~~n 202 (597)
T 3oja_B 128 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD-----LSLIPSLFHANVSYN 202 (597)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC-----GGGCTTCSEEECCSS
T ss_pred EEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC-----hhhhhhhhhhhcccC
Confidence 666666666444444566666666666666666655556666666666666666664321 244566666666666
Q ss_pred ccccccchhhHHhHHhhhhcCCcccccccccCCCCCCceeeEEEEEeccc-hhhhhhhhheeEEEccCcccccCCchhhh
Q 019924 148 EFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGID-IKMERILTIFMTIDLSSNKFQGGIPEVVG 226 (334)
Q Consensus 148 ~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~ 226 (334)
.+.+.... .. +..++...+.+..+.... ...+..+.+..+.+. ...+..+++|+.|+|++|.+++.+|..+.
T Consensus 203 ~l~~l~~~---~~---L~~L~ls~n~l~~~~~~~-~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~ 275 (597)
T 3oja_B 203 LLSTLAIP---IA---VEELDASHNSINVVRGPV-NVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFV 275 (597)
T ss_dssp CCSEEECC---TT---CSEEECCSSCCCEEECSC-CSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGT
T ss_pred ccccccCC---ch---hheeeccCCccccccccc-CCCCCEEECCCCCCCCChhhccCCCCCEEECCCCccCCCCHHHhc
Confidence 65543211 11 222221111111111100 011222222111111 13344566777777777777766677777
Q ss_pred CcCCCCeeeccCCccCCC
Q 019924 227 KLNLLKGLNISHNNLTGL 244 (334)
Q Consensus 227 ~l~~L~~L~Ls~N~l~~l 244 (334)
.+++|+.|+|++|+++++
T Consensus 276 ~l~~L~~L~Ls~N~l~~l 293 (597)
T 3oja_B 276 KMQRLERLYISNNRLVAL 293 (597)
T ss_dssp TCSSCCEEECTTSCCCEE
T ss_pred CccCCCEEECCCCCCCCC
Confidence 777777777777766643
No 42
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.91 E-value=1.4e-25 Score=198.37 Aligned_cols=189 Identities=22% Similarity=0.209 Sum_probs=114.4
Q ss_pred CCCcccEEEcCCCCCCCCCCC-----CCCCCCeEECCCC-----------------CCCCEEeCCCCcCccccCcCccCC
Q 019924 5 GIATLYYLDLSNNFLTNIEYF-----PPTNMTQLNFDSN-----------------LTHKVLDMRMNNFNGKIPRKFVKS 62 (334)
Q Consensus 5 ~l~~L~~L~Ls~n~l~~~~~~-----~~~~L~~L~l~~n-----------------~~L~~L~Ls~N~l~~~~p~~~~~l 62 (334)
++++|++|++++|.+++..|. .+++|++|++++| ++|++|++++|++++..|..|..+
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l 172 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVF 172 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCC
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccC
Confidence 578999999999999876553 3455666665555 245666666666655555556666
Q ss_pred CCccEEeCCCCccccC--CCccc--cCCCCCCEEEccCCcCCcC---CChhhhcCCCCCEEEeecccCcccCCCCCCCCC
Q 019924 63 CNLTSLNLNGNRLEGP--LPPSL--VNCHHLEVLNVGNNQINDN---FPNWLEILPELQVLILRSNRFWGPIGENTTIVP 135 (334)
Q Consensus 63 ~~L~~L~L~~n~l~~~--~p~~l--~~l~~L~~L~Ls~N~l~~~---~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~ 135 (334)
++|++|++++|++.+. .|..+ .++++|++|++++|++++. ....+..+++|++|++++|++++..+... +..
T Consensus 173 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~-~~~ 251 (312)
T 1wwl_A 173 PALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPS-CDW 251 (312)
T ss_dssp SSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSC-CCC
T ss_pred CCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhh-hhh
Confidence 6666666666655432 12222 5555666666666655521 11223345566666666666554442211 134
Q ss_pred CCCccEEEecCCccccccchhhHHhHHhhhhcCCcccccccccCCCCCCceeeEEEEEeccchhhhhhhhheeEEEccCc
Q 019924 136 FPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSN 215 (334)
Q Consensus 136 l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N 215 (334)
+++|+.|++++|.++. +|.. . .++|+.|||++|
T Consensus 252 l~~L~~L~Ls~N~l~~-ip~~-------------------------------------------~---~~~L~~L~Ls~N 284 (312)
T 1wwl_A 252 PSQLNSLNLSFTGLKQ-VPKG-------------------------------------------L---PAKLSVLDLSYN 284 (312)
T ss_dssp CTTCCEEECTTSCCSS-CCSS-------------------------------------------C---CSEEEEEECCSS
T ss_pred cCCCCEEECCCCccCh-hhhh-------------------------------------------c---cCCceEEECCCC
Confidence 5556666666665552 2211 1 156889999999
Q ss_pred ccccCCchhhhCcCCCCeeeccCCccCC
Q 019924 216 KFQGGIPEVVGKLNLLKGLNISHNNLTG 243 (334)
Q Consensus 216 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 243 (334)
++++. |. +..+++|+.|++++|++++
T Consensus 285 ~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 285 RLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp CCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred CCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 99855 65 8889999999999998875
No 43
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.91 E-value=2.7e-24 Score=189.53 Aligned_cols=213 Identities=16% Similarity=0.161 Sum_probs=153.7
Q ss_pred cEEEcCCCCCCCCCCCCCCCCCeEECCCC-------------CCCCEEeCCCCcCccc--cCcCccCCCCccEEeCCCCc
Q 019924 10 YYLDLSNNFLTNIEYFPPTNMTQLNFDSN-------------LTHKVLDMRMNNFNGK--IPRKFVKSCNLTSLNLNGNR 74 (334)
Q Consensus 10 ~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n-------------~~L~~L~Ls~N~l~~~--~p~~~~~l~~L~~L~L~~n~ 74 (334)
+.++++++.++.++....++++.|++++| ++|++|++++|+++.. .|..+..+++|++|++++|.
T Consensus 10 ~~l~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~ 89 (306)
T 2z66_A 10 TEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG 89 (306)
T ss_dssp TEEECCSSCCSSCCSCCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCS
T ss_pred CEEEcCCCCcccCCCCCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCc
Confidence 57899999999888777788888888877 5788888888888732 35666678888888888888
Q ss_pred cccCCCccccCCCCCCEEEccCCcCCcCCC-hhhhcCCCCCEEEeecccCcccCCCCCCCCCCCCccEEEecCCcccccc
Q 019924 75 LEGPLPPSLVNCHHLEVLNVGNNQINDNFP-NWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVL 153 (334)
Q Consensus 75 l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~-~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 153 (334)
++ .+|..+.++++|++|++++|++++..+ ..+..+++|++|++++|.+.+..+..+ ..+++|+.|++++|.+.+..
T Consensus 90 i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~n~l~~~~ 166 (306)
T 2z66_A 90 VI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIF--NGLSSLEVLKMAGNSFQENF 166 (306)
T ss_dssp EE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTT--TTCTTCCEEECTTCEEGGGE
T ss_pred cc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhc--ccCcCCCEEECCCCcccccc
Confidence 87 466678888888888888888877544 567788888888888888876666655 77888888888888887632
Q ss_pred chhhHHhHHhhhhcCCcccccccccCCCCCCceeeEEEEEeccchhhhhhhhheeEEEccCcccccCCchhhhCcCCCCe
Q 019924 154 LTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKG 233 (334)
Q Consensus 154 ~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~ 233 (334)
....+..+++|+.++...+ .+..+....+..+++|+.|+|++|++++..+..+..+++|+.
T Consensus 167 ~~~~~~~l~~L~~L~Ls~n-------------------~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 227 (306)
T 2z66_A 167 LPDIFTELRNLTFLDLSQC-------------------QLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQV 227 (306)
T ss_dssp ECSCCTTCTTCCEEECTTS-------------------CCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCE
T ss_pred chhHHhhCcCCCEEECCCC-------------------CcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCE
Confidence 2233444444444333221 122233344445678888888888888766667788888888
Q ss_pred eeccCCccCCC
Q 019924 234 LNISHNNLTGL 244 (334)
Q Consensus 234 L~Ls~N~l~~l 244 (334)
|++++|++++.
T Consensus 228 L~L~~N~l~~~ 238 (306)
T 2z66_A 228 LDYSLNHIMTS 238 (306)
T ss_dssp EECTTSCCCBC
T ss_pred eECCCCCCccc
Confidence 88888887654
No 44
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.91 E-value=1.1e-23 Score=188.84 Aligned_cols=226 Identities=21% Similarity=0.249 Sum_probs=175.5
Q ss_pred CCCcccEEEcCCCCCCCCCC-CCCCCCCeEECCCC-----------CCCCEEeCCCCcCccccCcCccCCCCccEEeCCC
Q 019924 5 GIATLYYLDLSNNFLTNIEY-FPPTNMTQLNFDSN-----------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNG 72 (334)
Q Consensus 5 ~l~~L~~L~Ls~n~l~~~~~-~~~~~L~~L~l~~n-----------~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~ 72 (334)
.+++|++|++++|.++++++ ..+++|++|++++| ++|++|++++|++++. +. +..+++|++|++++
T Consensus 64 ~~~~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~l~~n~i~~~-~~-~~~l~~L~~L~l~~ 141 (347)
T 4fmz_A 64 YLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDISALQNLTNLRELYLNEDNISDI-SP-LANLTKMYSLNLGA 141 (347)
T ss_dssp GCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEECTTSCCCCC-GG-GTTCTTCCEEECTT
T ss_pred hcCCccEEEccCCccccchhhhcCCcCCEEEccCCcccCchHHcCCCcCCEEECcCCcccCc-hh-hccCCceeEEECCC
Confidence 57899999999999998876 77899999999998 7899999999999854 33 88999999999999
Q ss_pred CccccCCCccccCCCCCCEEEccCCcCCcCCChhhhcCCCCCEEEeecccCcccCCCCCCCCCCCCccEEEecCCccccc
Q 019924 73 NRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGV 152 (334)
Q Consensus 73 n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 152 (334)
|.....++ .+..+++|++|++++|.+.+..+ +..+++|++|++++|.+.+..+ +..+++|+.|++++|.+.+.
T Consensus 142 n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~----~~~l~~L~~L~l~~n~l~~~ 214 (347)
T 4fmz_A 142 NHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP----LASLTSLHYFTAYVNQITDI 214 (347)
T ss_dssp CTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCCGG----GGGCTTCCEEECCSSCCCCC
T ss_pred CCCccccc-chhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccccccc----ccCCCccceeecccCCCCCC
Confidence 97664444 58999999999999999987443 8899999999999999865433 37899999999999999876
Q ss_pred cchhhHHhHHhhhhcCCcccccccccCCCCCCceeeEEEEEeccch-hhhhhhhheeEEEccCcccccCCchhhhCcCCC
Q 019924 153 LLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDI-KMERILTIFMTIDLSSNKFQGGIPEVVGKLNLL 231 (334)
Q Consensus 153 ~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L 231 (334)
.+ +..+++|+.++...+.+...........++.+.+..+.+.. ..+..+++|+.|++++|.+++. +.+..+++|
T Consensus 215 ~~---~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L 289 (347)
T 4fmz_A 215 TP---VANMTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQISDINAVKDLTKLKMLNVGSNQISDI--SVLNNLSQL 289 (347)
T ss_dssp GG---GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCC--GGGGGCTTC
T ss_pred ch---hhcCCcCCEEEccCCccCCCcchhcCCCCCEEECCCCccCCChhHhcCCCcCEEEccCCccCCC--hhhcCCCCC
Confidence 55 55556665555544433333333333333333333332221 3456689999999999999854 468899999
Q ss_pred CeeeccCCccCCC
Q 019924 232 KGLNISHNNLTGL 244 (334)
Q Consensus 232 ~~L~Ls~N~l~~l 244 (334)
+.|++++|++++.
T Consensus 290 ~~L~L~~n~l~~~ 302 (347)
T 4fmz_A 290 NSLFLNNNQLGNE 302 (347)
T ss_dssp SEEECCSSCCCGG
T ss_pred CEEECcCCcCCCc
Confidence 9999999999754
No 45
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.91 E-value=2.4e-24 Score=214.68 Aligned_cols=123 Identities=20% Similarity=0.181 Sum_probs=103.1
Q ss_pred CCcccEEEcCCCCCCCCCC---CCCCCCCeEECCCC--------------CCCCEEeCCCCcCccccCcCccCCCCccEE
Q 019924 6 IATLYYLDLSNNFLTNIEY---FPPTNMTQLNFDSN--------------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSL 68 (334)
Q Consensus 6 l~~L~~L~Ls~n~l~~~~~---~~~~~L~~L~l~~n--------------~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 68 (334)
.+++++|||++|.++++.+ ..+++|++|++++| ++|++|+|++|.+++..|..|.++++|++|
T Consensus 23 p~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 102 (844)
T 3j0a_A 23 LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFEL 102 (844)
T ss_dssp CTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCE
T ss_pred CCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEe
Confidence 4788999999999988766 56788889998888 578999999999998889999999999999
Q ss_pred eCCCCccccCCCcc--ccCCCCCCEEEccCCcCCcCCC-hhhhcCCCCCEEEeecccCcccCC
Q 019924 69 NLNGNRLEGPLPPS--LVNCHHLEVLNVGNNQINDNFP-NWLEILPELQVLILRSNRFWGPIG 128 (334)
Q Consensus 69 ~L~~n~l~~~~p~~--l~~l~~L~~L~Ls~N~l~~~~~-~~l~~l~~L~~L~L~~N~l~~~~~ 128 (334)
++++|.+++..|.. +.++++|++|++++|.+++..+ ..|+.+++|++|++++|.+++..+
T Consensus 103 ~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~ 165 (844)
T 3j0a_A 103 RLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCE 165 (844)
T ss_dssp ECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCS
T ss_pred eCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCH
Confidence 99999998766554 8889999999999999887654 578889999999999988765433
No 46
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.91 E-value=1.2e-24 Score=205.64 Aligned_cols=136 Identities=16% Similarity=0.176 Sum_probs=81.6
Q ss_pred hcCCCCCEEEeecccCcccCCCCCCCCCCCCccEEEecCCccccccc-hhhHHhHHhhhhcCCccccccc-cc-----C-
Q 019924 108 EILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLL-TGYLDNFKAMMHGNNISVEVDY-MT-----P- 179 (334)
Q Consensus 108 ~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~~l~~L~~~~~~~~~~~~-~~-----~- 179 (334)
..+++|++|++++|++++..+..+ ..+++|+.|++++|++++... ...+..+++|+.++...+.+.. ++ .
T Consensus 321 ~~l~~L~~L~Ls~n~l~~~~~~~~--~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l 398 (520)
T 2z7x_B 321 SKISPFLHLDFSNNLLTDTVFENC--GHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWT 398 (520)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTC--CCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCC
T ss_pred hhCCcccEEEeECCccChhhhhhh--ccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccC
Confidence 455667777777777766555544 666677777777776664211 1224444444444332222111 10 0
Q ss_pred --------------------C-CCCCceeeEEEEEeccchhhhhhhhheeEEEccCcccccCCchh-hhCcCCCCeeecc
Q 019924 180 --------------------L-NSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEV-VGKLNLLKGLNIS 237 (334)
Q Consensus 180 --------------------~-~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~-l~~l~~L~~L~Ls 237 (334)
. .....+....+.+..++.... .+++|++|++++|+++ .+|.. +..+++|+.|+++
T Consensus 399 ~~L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N~l~~ip~~~~-~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~ 476 (520)
T 2z7x_B 399 KSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIKSIPKQVV-KLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLH 476 (520)
T ss_dssp TTCCEEECCSSCCCGGGGGSCCTTCCEEECCSSCCCCCCGGGG-GCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECC
T ss_pred ccCCEEECcCCCCCcchhhhhcccCCEEECCCCcccccchhhh-cCCCCCEEECCCCcCC-ccCHHHhccCCcccEEECc
Confidence 0 111222222223334444444 6899999999999999 56655 8999999999999
Q ss_pred CCccCCCCCC
Q 019924 238 HNNLTGLCGF 247 (334)
Q Consensus 238 ~N~l~~l~~~ 247 (334)
+|++++.|..
T Consensus 477 ~N~~~c~c~~ 486 (520)
T 2z7x_B 477 TNPWDCSCPR 486 (520)
T ss_dssp SSCBCCCHHH
T ss_pred CCCCcccCCc
Confidence 9999987753
No 47
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.91 E-value=4.5e-24 Score=204.94 Aligned_cols=232 Identities=17% Similarity=0.206 Sum_probs=166.6
Q ss_pred CCCcccEEEcCCCCCCCCCC---CCCCCCCeEECCCC-------------CCCCEEeCCCCcCccccCcCccCCCCccEE
Q 019924 5 GIATLYYLDLSNNFLTNIEY---FPPTNMTQLNFDSN-------------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSL 68 (334)
Q Consensus 5 ~l~~L~~L~Ls~n~l~~~~~---~~~~~L~~L~l~~n-------------~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 68 (334)
++++|++|++++|.++++++ ..+++|+.|++++| ++|++|+|++|.+++..+..|..+++|++|
T Consensus 73 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L 152 (597)
T 3oja_B 73 SFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTL 152 (597)
T ss_dssp HCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEE
Confidence 47899999999999998876 56788999999988 689999999999997766778999999999
Q ss_pred eCCCCccccCCCccccCCCCCCEEEccCCcCCcCCChhhhcCCCCCEEEeecccCcccCCC-CC-------------CCC
Q 019924 69 NLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGE-NT-------------TIV 134 (334)
Q Consensus 69 ~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~-~~-------------~~~ 134 (334)
++++|.+++..|..|.++++|++|++++|.+++.. +..+++|+.|++++|.+++.... .+ ...
T Consensus 153 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~ 229 (597)
T 3oja_B 153 SMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGP 229 (597)
T ss_dssp ECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECS
T ss_pred EeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccCccccccCCchhheeeccCCcccccccc
Confidence 99999999888889999999999999999998853 34556666666666655431100 00 001
Q ss_pred CCCCccEEEecCCccccccchhhHHhHHhhhhcCCccccccc-----ccCCCCCCceeeEEEEEeccchhhhhhhhheeE
Q 019924 135 PFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDY-----MTPLNSSNYYESIILTIKGIDIKMERILTIFMT 209 (334)
Q Consensus 135 ~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~ 209 (334)
..++|+.|++++|.+++. ..+..++.|..++...+.+.. +........+....+.+.+++. ....+++|+.
T Consensus 230 ~~~~L~~L~L~~n~l~~~---~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~-~~~~l~~L~~ 305 (597)
T 3oja_B 230 VNVELTILKLQHNNLTDT---AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNL-YGQPIPTLKV 305 (597)
T ss_dssp CCSCCCEEECCSSCCCCC---GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEEEC-SSSCCTTCCE
T ss_pred cCCCCCEEECCCCCCCCC---hhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCCCc-ccccCCCCcE
Confidence 235788888888888764 335666666665554433322 2222222222222222223222 2234778999
Q ss_pred EEccCcccccCCchhhhCcCCCCeeeccCCccCCC
Q 019924 210 IDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGL 244 (334)
Q Consensus 210 L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~l 244 (334)
|+|++|.++ .+|..+..+++|+.|++++|+++++
T Consensus 306 L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~ 339 (597)
T 3oja_B 306 LDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL 339 (597)
T ss_dssp EECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC
T ss_pred EECCCCCCC-ccCcccccCCCCCEEECCCCCCCCc
Confidence 999999988 6787888889999999999988765
No 48
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.90 E-value=2.1e-23 Score=185.97 Aligned_cols=231 Identities=16% Similarity=0.174 Sum_probs=146.6
Q ss_pred CcccEEEcCCCCCCCCCC---CCCCCCCeEECCCC-------------CCCCEEeCCCCcCccccCcCccCCCCccEEeC
Q 019924 7 ATLYYLDLSNNFLTNIEY---FPPTNMTQLNFDSN-------------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNL 70 (334)
Q Consensus 7 ~~L~~L~Ls~n~l~~~~~---~~~~~L~~L~l~~n-------------~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 70 (334)
++|++|++++|.++++++ ..+++|+.|++++| ++|++|++++|+++ .+|..+. ++|++|++
T Consensus 54 ~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~--~~L~~L~l 130 (332)
T 2ft3_A 54 PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLP--SSLVELRI 130 (332)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCC-SCCSSCC--TTCCEEEC
T ss_pred CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCC-ccCcccc--ccCCEEEC
Confidence 567788888888777655 45677777887777 57788888888877 4555444 67788888
Q ss_pred CCCccccCCCccccCCCCCCEEEccCCcCCc--CCChhhhcCCCCCEEEeecccCcccCCCCCCCCCCCCccEEEecCCc
Q 019924 71 NGNRLEGPLPPSLVNCHHLEVLNVGNNQIND--NFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNE 148 (334)
Q Consensus 71 ~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~--~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~ 148 (334)
++|++++..+..|.++++|++|++++|.++. ..+..+..+ +|++|++++|++++ +|... .++|+.|++++|.
T Consensus 131 ~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~-l~~~~----~~~L~~L~l~~n~ 204 (332)
T 2ft3_A 131 HDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG-IPKDL----PETLNELHLDHNK 204 (332)
T ss_dssp CSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS-CCSSS----CSSCSCCBCCSSC
T ss_pred CCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc-cCccc----cCCCCEEECCCCc
Confidence 8888776555667777888888888887753 455666665 67777777777654 33322 2566666666666
Q ss_pred cccccchhhHHhHHhhhhcCCccccccccc-----CCCCCCceeeEEEEEeccchhhhhhhhheeEEEccCcccccCCch
Q 019924 149 FTGVLLTGYLDNFKAMMHGNNISVEVDYMT-----PLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPE 223 (334)
Q Consensus 149 l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~ 223 (334)
+++..+.. +..+++|+.++...+.+.... .......+....+.+..++.. +..+++|+.|++++|++++..+.
T Consensus 205 i~~~~~~~-l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~-l~~l~~L~~L~l~~N~l~~~~~~ 282 (332)
T 2ft3_A 205 IQAIELED-LLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAG-LPDLKLLQVVYLHTNNITKVGVN 282 (332)
T ss_dssp CCCCCTTS-STTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCCTT-GGGCTTCCEEECCSSCCCBCCTT
T ss_pred CCccCHHH-hcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeecChh-hhcCccCCEEECCCCCCCccChh
Confidence 66544322 444455544444333222221 112222222222233333333 45588999999999999977777
Q ss_pred hhhC------cCCCCeeeccCCccCCCCCCC
Q 019924 224 VVGK------LNLLKGLNISHNNLTGLCGFP 248 (334)
Q Consensus 224 ~l~~------l~~L~~L~Ls~N~l~~l~~~~ 248 (334)
.+.. .+.|+.|++++|+++.....|
T Consensus 283 ~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~ 313 (332)
T 2ft3_A 283 DFCPVGFGVKRAYYNGISLFNNPVPYWEVQP 313 (332)
T ss_dssp SSSCSSCCSSSCCBSEEECCSSSSCGGGSCG
T ss_pred HccccccccccccccceEeecCcccccccCc
Confidence 6655 367899999999987544433
No 49
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.90 E-value=1.4e-23 Score=207.52 Aligned_cols=143 Identities=19% Similarity=0.200 Sum_probs=119.1
Q ss_pred CCCcccEEEcCCCCCCCCCC---CCCCCCCeEECCCCC----------------------CCCEEeCCCCcCccccCc--
Q 019924 5 GIATLYYLDLSNNFLTNIEY---FPPTNMTQLNFDSNL----------------------THKVLDMRMNNFNGKIPR-- 57 (334)
Q Consensus 5 ~l~~L~~L~Ls~n~l~~~~~---~~~~~L~~L~l~~n~----------------------~L~~L~Ls~N~l~~~~p~-- 57 (334)
++++|++|+|++|.+.+..| ..+++|+.|++++|. +|++|++++|+++ .+|.
T Consensus 489 ~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~ 567 (876)
T 4ecn_A 489 NLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASA 567 (876)
T ss_dssp GCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHH
T ss_pred cCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChh
Confidence 68999999999999888877 578899999999995 8999999999999 8888
Q ss_pred CccCCCCccEEeCCCCccccCCCccccCCCCCCEEEccCCcCCcCCChhhhcCCC-CCEEEeecccCcccCCCCCCCCCC
Q 019924 58 KFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPE-LQVLILRSNRFWGPIGENTTIVPF 136 (334)
Q Consensus 58 ~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~-L~~L~L~~N~l~~~~~~~~~~~~l 136 (334)
.|..+++|+.|++++|+++ .+| .|.++++|+.|++++|+++ .+|..+..+++ |++|++++|+++ .+|..+.....
T Consensus 568 ~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~ 643 (876)
T 4ecn_A 568 SLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSV 643 (876)
T ss_dssp HHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCS
T ss_pred hhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhcccc
Confidence 8999999999999999998 778 8899999999999999998 57888888888 999999999986 56654422222
Q ss_pred CCccEEEecCCccccc
Q 019924 137 PSLRIIDLSHNEFTGV 152 (334)
Q Consensus 137 ~~L~~L~Ls~N~l~~~ 152 (334)
++|+.|++++|.+.+.
T Consensus 644 ~~L~~L~Ls~N~l~g~ 659 (876)
T 4ecn_A 644 YVMGSVDFSYNKIGSE 659 (876)
T ss_dssp SCEEEEECCSSCTTTT
T ss_pred CCCCEEECcCCcCCCc
Confidence 3366666666666554
No 50
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.90 E-value=2.3e-23 Score=180.61 Aligned_cols=178 Identities=21% Similarity=0.159 Sum_probs=148.8
Q ss_pred cCCCcccEEEcCCCCCCCCCCCCCCCCCeEECCCCCCCCEEeCCCCcCccccCcCccCCCCccEEeCCCCccccCCCccc
Q 019924 4 LGIATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSL 83 (334)
Q Consensus 4 ~~l~~L~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l 83 (334)
..+++|++|++++|.+++.. .+..+ ++|++|++++|++++..+..|..+++|++|++++|++++..+..+
T Consensus 60 ~~l~~L~~L~l~~n~l~~~~--~l~~l--------~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 129 (272)
T 3rfs_A 60 QYLPNVRYLALGGNKLHDIS--ALKEL--------TNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVF 129 (272)
T ss_dssp GGCTTCCEEECTTSCCCCCG--GGTTC--------TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTT
T ss_pred ccCCCCcEEECCCCCCCCch--hhcCC--------CCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHh
Confidence 35799999999999998753 23333 445999999999998888889999999999999999998777789
Q ss_pred cCCCCCCEEEccCCcCCcCCChhhhcCCCCCEEEeecccCcccCCCCCCCCCCCCccEEEecCCccccccchhhHHhHHh
Q 019924 84 VNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKA 163 (334)
Q Consensus 84 ~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~ 163 (334)
.++++|++|++++|++++..+..+..+++|++|++++|++++..+..+ ..+++|+.|++++|.+++..+.. +
T Consensus 130 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~L~~N~l~~~~~~~-~----- 201 (272)
T 3rfs_A 130 DKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVF--DKLTQLKDLRLYQNQLKSVPDGV-F----- 201 (272)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT--TTCTTCCEEECCSSCCSCCCTTT-T-----
T ss_pred ccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHh--cCCccCCEEECCCCcCCccCHHH-H-----
Confidence 999999999999999999878888999999999999999987666544 78999999999999998765422 1
Q ss_pred hhhcCCcccccccccCCCCCCceeeEEEEEeccchhhhhhhhheeEEEccCcccccCCchhhhCcCCCCeeeccCCccCC
Q 019924 164 MMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTG 243 (334)
Q Consensus 164 L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 243 (334)
..+++|+.|++++|.+.+. ++.|+.|+++.|.++|
T Consensus 202 --------------------------------------~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g 236 (272)
T 3rfs_A 202 --------------------------------------DRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSG 236 (272)
T ss_dssp --------------------------------------TTCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHTGG
T ss_pred --------------------------------------hCCcCCCEEEccCCCcccc-------CcHHHHHHHHHHhCCC
Confidence 1267789999999988754 4568889999998876
Q ss_pred C
Q 019924 244 L 244 (334)
Q Consensus 244 l 244 (334)
.
T Consensus 237 ~ 237 (272)
T 3rfs_A 237 V 237 (272)
T ss_dssp G
T ss_pred c
Confidence 3
No 51
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.90 E-value=3.6e-23 Score=197.44 Aligned_cols=218 Identities=15% Similarity=0.184 Sum_probs=164.3
Q ss_pred CCCcccEEEcCCCCCCCCCCCCCCCCCeEECCCC-----------CCCCEEeCCCCcCcccc--CcCccCCCCccEEeCC
Q 019924 5 GIATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSN-----------LTHKVLDMRMNNFNGKI--PRKFVKSCNLTSLNLN 71 (334)
Q Consensus 5 ~l~~L~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n-----------~~L~~L~Ls~N~l~~~~--p~~~~~l~~L~~L~L~ 71 (334)
++ +|++|++++|.++.++...+++|+.|++++| ++|++|++++|++++.. |..+..+++|++|+++
T Consensus 303 ~~-~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~ 381 (570)
T 2z63_A 303 NF-GWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLS 381 (570)
T ss_dssp CC-CCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCCCCBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECC
T ss_pred cC-CccEEeeccCcccccCcccccccCEEeCcCCccccccccccCCCCCEEeCcCCccCccccccccccccCccCEEECC
Confidence 44 7889999999988776677888888888776 67888999988888543 6778888888889998
Q ss_pred CCccccCCCccccCCCCCCEEEccCCcCCcCCC-hhhhcCCCCCEEEeecccCcccCCCCCCCCCCCCccEEEecCCccc
Q 019924 72 GNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFP-NWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFT 150 (334)
Q Consensus 72 ~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~-~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~ 150 (334)
+|++++. |..+..+++|++|++++|.+.+..+ ..+..+++|++|++++|++.+..+..+ ..+++|+.|++++|.+.
T Consensus 382 ~n~l~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~n~l~ 458 (570)
T 2z63_A 382 FNGVITM-SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIF--NGLSSLEVLKMAGNSFQ 458 (570)
T ss_dssp SCSEEEE-EEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTT--TTCTTCCEEECTTCEEG
T ss_pred CCccccc-cccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhh--hcCCcCcEEECcCCcCc
Confidence 8888854 4448888888888888888877555 467788888888888888877766655 77888888888888886
Q ss_pred -cccchhhHHhHHhhhhcCCcccccccccCCCCCCceeeEEEEEeccchhhhhhhhheeEEEccCcccccCCchhhhCcC
Q 019924 151 -GVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLN 229 (334)
Q Consensus 151 -~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~ 229 (334)
+.+| ..+..+++|+.++...+ .+.++.+..+..+++|++|++++|++++..|..+.+++
T Consensus 459 ~~~~p-~~~~~l~~L~~L~l~~n-------------------~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 518 (570)
T 2z63_A 459 ENFLP-DIFTELRNLTFLDLSQC-------------------QLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLT 518 (570)
T ss_dssp GGEEC-SCCTTCTTCCEEECTTS-------------------CCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCT
T ss_pred cccch-hhhhcccCCCEEECCCC-------------------ccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhccc
Confidence 3344 22444444444433221 12223333444578899999999999987778888999
Q ss_pred CCCeeeccCCccCCCCC
Q 019924 230 LLKGLNISHNNLTGLCG 246 (334)
Q Consensus 230 ~L~~L~Ls~N~l~~l~~ 246 (334)
+|+.|++++|++++-|.
T Consensus 519 ~L~~L~l~~N~~~~~~~ 535 (570)
T 2z63_A 519 SLQKIWLHTNPWDCSCP 535 (570)
T ss_dssp TCCEEECCSSCBCCCTT
T ss_pred CCcEEEecCCcccCCCc
Confidence 99999999999887664
No 52
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.90 E-value=3.6e-24 Score=189.79 Aligned_cols=213 Identities=18% Similarity=0.091 Sum_probs=110.6
Q ss_pred CCCcccEEEcCCCCCCCCCC---CCCCCCCeEECCCCCCCCEEeCCCCcCccccCcCccCCCCccEEeCCCCccccCCCc
Q 019924 5 GIATLYYLDLSNNFLTNIEY---FPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPP 81 (334)
Q Consensus 5 ~l~~L~~L~Ls~n~l~~~~~---~~~~~L~~L~l~~n~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~ 81 (334)
.+++|++|++++|.+++.++ ..+++|+.|++ ++|++++..+ +..+++|++|++++|++++. +
T Consensus 32 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L-----------s~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l-~- 96 (317)
T 3o53_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNL-----------SSNVLYETLD--LESLSTLRTLDLNNNYVQEL-L- 96 (317)
T ss_dssp TGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEEC-----------TTSCCEEEEE--ETTCTTCCEEECCSSEEEEE-E-
T ss_pred cCCCCCEEECcCCccCcCCHHHhhCCCcCCEEEC-----------CCCcCCcchh--hhhcCCCCEEECcCCccccc-c-
Confidence 35689999999999998876 44555555554 4444443322 44444455555555544421 1
Q ss_pred cccCCCCCCEEEccCCcCCcCCChhhhcCCCCCEEEeecccCcccCCCCCCCCCCCCccEEEecCCccccccchhhHHhH
Q 019924 82 SLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNF 161 (334)
Q Consensus 82 ~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l 161 (334)
..++|++|++++|++++..+. .+++|++|++++|++++..+..+ ..+++|+.|++++|.+++..+..+...+
T Consensus 97 ---~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~--~~l~~L~~L~Ls~N~l~~~~~~~~~~~l 168 (317)
T 3o53_A 97 ---VGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDE--GCRSRVQYLDLKLNEIDTVNFAELAASS 168 (317)
T ss_dssp ---ECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCT--GGGSSEEEEECTTSCCCEEEGGGGGGGT
T ss_pred ---CCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhh--hccCCCCEEECCCCCCCcccHHHHhhcc
Confidence 124444444444444442222 23444444444444443333222 3444444444444444443333333333
Q ss_pred HhhhhcCCcccccccccCCCCCCceeeEE---EEEeccchhhhhhhhheeEEEccCcccccCCchhhhCcCCCCeeeccC
Q 019924 162 KAMMHGNNISVEVDYMTPLNSSNYYESII---LTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISH 238 (334)
Q Consensus 162 ~~L~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~ 238 (334)
+.|+.++...+.+...........++.++ +.+..++.. +..+++|+.|+|++|+++ .+|..+..+++|+.|++++
T Consensus 169 ~~L~~L~L~~N~l~~~~~~~~l~~L~~L~Ls~N~l~~l~~~-~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~ 246 (317)
T 3o53_A 169 DTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRG 246 (317)
T ss_dssp TTCCEEECTTSCCCEEECCCCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTT
T ss_pred CcCCEEECCCCcCcccccccccccCCEEECCCCcCCcchhh-hcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccC
Confidence 33333333222222111111111122222 223333333 455788999999999988 5777888888999999999
Q ss_pred CccC
Q 019924 239 NNLT 242 (334)
Q Consensus 239 N~l~ 242 (334)
|+++
T Consensus 247 N~~~ 250 (317)
T 3o53_A 247 NGFH 250 (317)
T ss_dssp CCCB
T ss_pred CCcc
Confidence 9887
No 53
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.90 E-value=3.2e-24 Score=207.35 Aligned_cols=234 Identities=18% Similarity=0.202 Sum_probs=154.1
Q ss_pred cCCCcccEEEcCCCCCCC------------------CCC--C--CCCCCCeEECCCC-------------CCCCEEeCCC
Q 019924 4 LGIATLYYLDLSNNFLTN------------------IEY--F--PPTNMTQLNFDSN-------------LTHKVLDMRM 48 (334)
Q Consensus 4 ~~l~~L~~L~Ls~n~l~~------------------~~~--~--~~~~L~~L~l~~n-------------~~L~~L~Ls~ 48 (334)
.++++|++|+|++|.+++ ++. . .+++|++|++++| ++|++|++++
T Consensus 203 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~ 282 (636)
T 4eco_A 203 MRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVAC 282 (636)
T ss_dssp GGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTT
T ss_pred hcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcC
Confidence 368999999999999999 444 4 5777888887777 5777888888
Q ss_pred Cc-Ccc-ccCcCccCC------CCccEEeCCCCccccCCCc--cccCCCCCCEEEccCCcCCcCCChhhhcCCCCCEEEe
Q 019924 49 NN-FNG-KIPRKFVKS------CNLTSLNLNGNRLEGPLPP--SLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLIL 118 (334)
Q Consensus 49 N~-l~~-~~p~~~~~l------~~L~~L~L~~n~l~~~~p~--~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L 118 (334)
|+ +++ .+|..++.+ ++|++|++++|+++ .+|. .+.++++|++|++++|++++.+| .++.+++|++|++
T Consensus 283 n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L 360 (636)
T 4eco_A 283 NRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNL 360 (636)
T ss_dssp CTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEEC
T ss_pred CCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEEC
Confidence 87 776 677776665 77888888888877 6776 77778888888888888776667 6777778888888
Q ss_pred ecccCcccCCCCCCCCCCCC-ccEEEecCCccccccchhhHHhH--HhhhhcCCccccccccc--CCC-------CCCce
Q 019924 119 RSNRFWGPIGENTTIVPFPS-LRIIDLSHNEFTGVLLTGYLDNF--KAMMHGNNISVEVDYMT--PLN-------SSNYY 186 (334)
Q Consensus 119 ~~N~l~~~~~~~~~~~~l~~-L~~L~Ls~N~l~~~~~~~~~~~l--~~L~~~~~~~~~~~~~~--~~~-------~~~~l 186 (334)
++|+++ .+|..+ ..+++ |+.|++++|.++. +|.. +..+ .+|..++...+.+.... ... ....+
T Consensus 361 ~~N~l~-~lp~~l--~~l~~~L~~L~Ls~N~l~~-lp~~-~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L 435 (636)
T 4eco_A 361 AYNQIT-EIPANF--CGFTEQVENLSFAHNKLKY-IPNI-FDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINV 435 (636)
T ss_dssp CSSEEE-ECCTTS--EEECTTCCEEECCSSCCSS-CCSC-CCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCE
T ss_pred CCCccc-cccHhh--hhhcccCcEEEccCCcCcc-cchh-hhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCC
Confidence 888776 555554 67777 8888888888773 3332 2221 13433333222221110 011 11122
Q ss_pred eeEE---EEEeccchhhhhhhhheeEEEccCcccccCCchhhhC--------cCCCCeeeccCCccCCCC
Q 019924 187 ESII---LTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGK--------LNLLKGLNISHNNLTGLC 245 (334)
Q Consensus 187 ~~~~---~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~--------l~~L~~L~Ls~N~l~~l~ 245 (334)
..+. +.+..++...+..+++|+.|+|++|+++ .+|..... +++|+.|++++|+++.+.
T Consensus 436 ~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp 504 (636)
T 4eco_A 436 SSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLS 504 (636)
T ss_dssp EEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCCBCC
T ss_pred CEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCcCCccC
Confidence 2222 2334455555666778888888888887 55544322 227888888888887543
No 54
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.90 E-value=1.4e-23 Score=185.41 Aligned_cols=188 Identities=18% Similarity=0.133 Sum_probs=126.6
Q ss_pred CCcccEEEcCCCCCCCCCCCC-----CCCCCeEECCCC-----------------CCCCEEeCCCCcCccccCcCccCCC
Q 019924 6 IATLYYLDLSNNFLTNIEYFP-----PTNMTQLNFDSN-----------------LTHKVLDMRMNNFNGKIPRKFVKSC 63 (334)
Q Consensus 6 l~~L~~L~Ls~n~l~~~~~~~-----~~~L~~L~l~~n-----------------~~L~~L~Ls~N~l~~~~p~~~~~l~ 63 (334)
+++|++|++++|.+++..+.. +++|+.|++++| ++|++|++++|++++..|..|..++
T Consensus 90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~ 169 (310)
T 4glp_A 90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFP 169 (310)
T ss_dssp HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCT
T ss_pred cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCC
Confidence 467999999999999877633 566777777766 3677777777777766667777777
Q ss_pred CccEEeCCCCccccC----CCccccCCCCCCEEEccCCcCCcCCCh----hhhcCCCCCEEEeecccCcccCCCCC-CCC
Q 019924 64 NLTSLNLNGNRLEGP----LPPSLVNCHHLEVLNVGNNQINDNFPN----WLEILPELQVLILRSNRFWGPIGENT-TIV 134 (334)
Q Consensus 64 ~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~~~~----~l~~l~~L~~L~L~~N~l~~~~~~~~-~~~ 134 (334)
+|++|++++|++.+. .+..+..+++|++|++++|+++. ++. .++.+++|++|++++|++++..|..+ .+.
T Consensus 170 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~ 248 (310)
T 4glp_A 170 ALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCM 248 (310)
T ss_dssp TCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCC
T ss_pred CCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhcc
Confidence 777777777776531 12233566777777777777754 222 24566777777777777766655443 111
Q ss_pred CCCCccEEEecCCccccccchhhHHhHHhhhhcCCcccccccccCCCCCCceeeEEEEEeccchhhhhhhhheeEEEccC
Q 019924 135 PFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSS 214 (334)
Q Consensus 135 ~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~ 214 (334)
.+++|+.|++++|+++.. |... .++|+.|||++
T Consensus 249 ~~~~L~~L~Ls~N~l~~l-p~~~----------------------------------------------~~~L~~L~Ls~ 281 (310)
T 4glp_A 249 WSSALNSLNLSFAGLEQV-PKGL----------------------------------------------PAKLRVLDLSS 281 (310)
T ss_dssp CCTTCCCEECCSSCCCSC-CSCC----------------------------------------------CSCCSCEECCS
T ss_pred CcCcCCEEECCCCCCCch-hhhh----------------------------------------------cCCCCEEECCC
Confidence 225777777777777632 2210 24678888888
Q ss_pred cccccCCchhhhCcCCCCeeeccCCccCC
Q 019924 215 NKFQGGIPEVVGKLNLLKGLNISHNNLTG 243 (334)
Q Consensus 215 N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 243 (334)
|++++. |. +..+++|+.|++++|+|++
T Consensus 282 N~l~~~-~~-~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 282 NRLNRA-PQ-PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp CCCCSC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred CcCCCC-ch-hhhCCCccEEECcCCCCCC
Confidence 888843 43 5777888888888888764
No 55
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.90 E-value=4.3e-24 Score=211.08 Aligned_cols=143 Identities=17% Similarity=0.235 Sum_probs=123.6
Q ss_pred cCCCcccEEEcCCCCCCC------------------CCC--C--CCCCCCeEECCCC-------------CCCCEEeCCC
Q 019924 4 LGIATLYYLDLSNNFLTN------------------IEY--F--PPTNMTQLNFDSN-------------LTHKVLDMRM 48 (334)
Q Consensus 4 ~~l~~L~~L~Ls~n~l~~------------------~~~--~--~~~~L~~L~l~~n-------------~~L~~L~Ls~ 48 (334)
.++++|++|+|++|.+++ ++. . .+++|+.|++++| ++|++|++++
T Consensus 445 ~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~ 524 (876)
T 4ecn_A 445 QRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIAC 524 (876)
T ss_dssp GGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTT
T ss_pred hcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcC
Confidence 367999999999999999 554 3 6889999999988 6899999999
Q ss_pred Cc-Ccc-ccCcCccCC-------CCccEEeCCCCccccCCCc--cccCCCCCCEEEccCCcCCcCCChhhhcCCCCCEEE
Q 019924 49 NN-FNG-KIPRKFVKS-------CNLTSLNLNGNRLEGPLPP--SLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLI 117 (334)
Q Consensus 49 N~-l~~-~~p~~~~~l-------~~L~~L~L~~n~l~~~~p~--~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ 117 (334)
|+ +++ .+|..++.+ ++|+.|++++|+++ .+|. .+.++++|++|++++|+++ .+| .++.+++|++|+
T Consensus 525 N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~ 601 (876)
T 4ecn_A 525 NRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLK 601 (876)
T ss_dssp CTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEE
T ss_pred CCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEE
Confidence 98 887 788766555 49999999999999 7888 8999999999999999998 577 888999999999
Q ss_pred eecccCcccCCCCCCCCCCCC-ccEEEecCCccccc
Q 019924 118 LRSNRFWGPIGENTTIVPFPS-LRIIDLSHNEFTGV 152 (334)
Q Consensus 118 L~~N~l~~~~~~~~~~~~l~~-L~~L~Ls~N~l~~~ 152 (334)
+++|+++ .+|..+ ..+++ |+.|++++|.++..
T Consensus 602 Ls~N~l~-~lp~~l--~~l~~~L~~L~Ls~N~L~~l 634 (876)
T 4ecn_A 602 LDYNQIE-EIPEDF--CAFTDQVEGLGFSHNKLKYI 634 (876)
T ss_dssp CCSSCCS-CCCTTS--CEECTTCCEEECCSSCCCSC
T ss_pred CcCCccc-cchHHH--hhccccCCEEECcCCCCCcC
Confidence 9999997 677655 78888 99999999999843
No 56
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.90 E-value=7.6e-24 Score=198.31 Aligned_cols=215 Identities=18% Similarity=0.097 Sum_probs=113.7
Q ss_pred CCcccEEEcCCCCCCCCCCCCCCCCCeEECCCCCCCCEEeCCCCcCccccCcCccCCCCccEEeCCCCccccCCCccccC
Q 019924 6 IATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVN 85 (334)
Q Consensus 6 l~~L~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~ 85 (334)
+++|++|+|++|.+++.++..+..+..| ++|+|++|.+++..| |..+++|++|++++|.+++.. .
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L--------~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-----~ 97 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLAPFTKL--------ELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----V 97 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGTTCTTC--------CEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE-----E
T ss_pred CCCccEEEeeCCcCCCCCHHHHhCCCCC--------CEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC-----C
Confidence 4589999999999999877433333332 555555555554333 455555555555555554221 1
Q ss_pred CCCCCEEEccCCcCCcCCChhhhcCCCCCEEEeecccCcccCCCCCCCCCCCCccEEEecCCccccccchhhHHhHHhhh
Q 019924 86 CHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMM 165 (334)
Q Consensus 86 l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~ 165 (334)
.++|++|++++|.+++..+. .+++|++|++++|.+++..+..+ ..+++|+.|++++|.+++..+..+...++.|.
T Consensus 98 ~~~L~~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~ 172 (487)
T 3oja_A 98 GPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDE--GCRSRVQYLDLKLNEIDTVNFAELAASSDTLE 172 (487)
T ss_dssp CTTCCEEECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCG--GGGSSEEEEECTTSCCCEEEGGGGGGGTTTCC
T ss_pred CCCcCEEECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhh--cCCCCCCEEECCCCCCCCcChHHHhhhCCccc
Confidence 14555555555555443222 23445555555555544444333 44455555555555555444433333344444
Q ss_pred hcCCcccccccccCCC---CCCceeeEEEEEeccchhhhhhhhheeEEEccCcccccCCchhhhCcCCCCeeeccCCccC
Q 019924 166 HGNNISVEVDYMTPLN---SSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLT 242 (334)
Q Consensus 166 ~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 242 (334)
.++...+.+....... ....+....+.+.+++.. +..+++|+.|+|++|.++ .+|..+..+++|+.|++++|+++
T Consensus 173 ~L~Ls~N~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 173 HLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp EEECTTSCCCEEECCCCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCBC
T ss_pred EEecCCCccccccccccCCCCCEEECCCCCCCCCCHh-HcCCCCccEEEecCCcCc-ccchhhccCCCCCEEEcCCCCCc
Confidence 3333222222211111 111111112223333333 445778888888888887 46777888888888888888876
No 57
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.89 E-value=2.5e-25 Score=196.81 Aligned_cols=217 Identities=16% Similarity=0.102 Sum_probs=150.2
Q ss_pred CCCcccEEEcCCCCCCCCCCCCCCCCCeEECCCC---------------------CCCCEEeCCCCcCccccCcCc--cC
Q 019924 5 GIATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSN---------------------LTHKVLDMRMNNFNGKIPRKF--VK 61 (334)
Q Consensus 5 ~l~~L~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n---------------------~~L~~L~Ls~N~l~~~~p~~~--~~ 61 (334)
+.++|+.|++++|.+ .++..-...|+.|++++| ++|++|++++|++++..|..+ ..
T Consensus 41 ~~~~L~~l~l~~n~l-~~p~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~ 119 (312)
T 1wwl_A 41 GGRSLEYLLKRVDTE-ADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEAT 119 (312)
T ss_dssp EEEECTTHHHHCCTT-CCCHHHHHHHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCC
T ss_pred cCCCceeEeeccccc-ccHHHHHHHHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhc
Confidence 446788888999988 443322222555555554 468899999999988888876 88
Q ss_pred CCCccEEeCCCCccccCCCccccCC-----CCCCEEEccCCcCCcCCChhhhcCCCCCEEEeecccCcccC--CCCCCCC
Q 019924 62 SCNLTSLNLNGNRLEGPLPPSLVNC-----HHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPI--GENTTIV 134 (334)
Q Consensus 62 l~~L~~L~L~~n~l~~~~p~~l~~l-----~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~--~~~~~~~ 134 (334)
+++|++|++++|++++. |..+..+ ++|++|++++|++++..|..++.+++|++|++++|++.+.+ +....+.
T Consensus 120 l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~ 198 (312)
T 1wwl_A 120 GPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPL 198 (312)
T ss_dssp SCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTT
T ss_pred CCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhc
Confidence 89999999999999866 7777776 88999999999998877788889999999999999876542 2223336
Q ss_pred CCCCccEEEecCCcccccc--chhhHHhHHhhhhcCCcccccccccCCCCCCceeeEEEEEeccchhhhhhhhheeEEEc
Q 019924 135 PFPSLRIIDLSHNEFTGVL--LTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDL 212 (334)
Q Consensus 135 ~l~~L~~L~Ls~N~l~~~~--~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~L 212 (334)
.+++|++|++++|.+++.. +...+..+++|+.++...+.+....+ ......+++|+.|+|
T Consensus 199 ~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~------------------~~~~~~l~~L~~L~L 260 (312)
T 1wwl_A 199 KFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAG------------------APSCDWPSQLNSLNL 260 (312)
T ss_dssp SCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCC------------------CSCCCCCTTCCEEEC
T ss_pred cCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccc------------------hhhhhhcCCCCEEEC
Confidence 7889999999999887432 22333344444444432222211110 011122567888888
Q ss_pred cCcccccCCchhhhCcCCCCeeeccCCccCCC
Q 019924 213 SSNKFQGGIPEVVGKLNLLKGLNISHNNLTGL 244 (334)
Q Consensus 213 s~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~l 244 (334)
++|+++ .+|..+. ++|+.|++++|+|+++
T Consensus 261 s~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~ 289 (312)
T 1wwl_A 261 SFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN 289 (312)
T ss_dssp TTSCCS-SCCSSCC--SEEEEEECCSSCCCSC
T ss_pred CCCccC-hhhhhcc--CCceEEECCCCCCCCC
Confidence 888887 6676665 7788888888887765
No 58
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.89 E-value=9.2e-23 Score=179.93 Aligned_cols=194 Identities=18% Similarity=0.231 Sum_probs=112.1
Q ss_pred CCCcccEEEcCCCCCCCCCC-CCCCCCCeEECCCCCCCCEEeCCCCcCccccCcCccCCCCccEEeCCCCccccCCCccc
Q 019924 5 GIATLYYLDLSNNFLTNIEY-FPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSL 83 (334)
Q Consensus 5 ~l~~L~~L~Ls~n~l~~~~~-~~~~~L~~L~l~~n~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l 83 (334)
++++|++|++++|.++.++. ..+++| ++|++++|++++..+ +..+++|++|++++|++++ ++ .+
T Consensus 39 ~l~~L~~L~l~~~~i~~l~~~~~l~~L-----------~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~-~~-~~ 103 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVTTIEGVQYLNNL-----------IGLELKDNQITDLAP--LKNLTKITELELSGNPLKN-VS-AI 103 (308)
T ss_dssp HHHTCCEEECTTSCCCCCTTGGGCTTC-----------CEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSC-CG-GG
T ss_pred HcCCcCEEEeeCCCccCchhhhccCCC-----------CEEEccCCcCCCChh--HccCCCCCEEEccCCcCCC-ch-hh
Confidence 46789999999999987643 334444 555555555553322 5555555555555555553 22 45
Q ss_pred cCCCCCCEEEccCCcCCcCCChhhhcCCCCCEEEeecccCcccCCCCCCCCCCCCccEEEecCCccccccchhhHHhHHh
Q 019924 84 VNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKA 163 (334)
Q Consensus 84 ~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~ 163 (334)
..+++|++|++++|++++. +. +..+++|++|++++|++++..+ +..+++|+.|++++|.+++..+ +..+++
T Consensus 104 ~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~~~~----l~~l~~L~~L~l~~n~l~~~~~---l~~l~~ 174 (308)
T 1h6u_A 104 AGLQSIKTLDLTSTQITDV-TP-LAGLSNLQVLYLDLNQITNISP----LAGLTNLQYLSIGNAQVSDLTP---LANLSK 174 (308)
T ss_dssp TTCTTCCEEECTTSCCCCC-GG-GTTCTTCCEEECCSSCCCCCGG----GGGCTTCCEEECCSSCCCCCGG---GTTCTT
T ss_pred cCCCCCCEEECCCCCCCCc-hh-hcCCCCCCEEECCCCccCcCcc----ccCCCCccEEEccCCcCCCChh---hcCCCC
Confidence 5555555555555555542 22 5555555555555555543322 2455555555555555554322 223333
Q ss_pred hhhcCCcccccccccCCCCCCceeeEEEEEeccchhhhhhhhheeEEEccCcccccCCchhhhCcCCCCeeeccCCccCC
Q 019924 164 MMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTG 243 (334)
Q Consensus 164 L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 243 (334)
|..++...+.+ .+++. +..+++|+.|++++|++++.. .+..+++|+.|++++|++++
T Consensus 175 L~~L~l~~n~l-------------------~~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 175 LTTLKADDNKI-------------------SDISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp CCEEECCSSCC-------------------CCCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEEC
T ss_pred CCEEECCCCcc-------------------CcChh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeec
Confidence 32222211111 11111 234788999999999998554 38999999999999999976
Q ss_pred CC
Q 019924 244 LC 245 (334)
Q Consensus 244 l~ 245 (334)
..
T Consensus 232 ~~ 233 (308)
T 1h6u_A 232 QP 233 (308)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 59
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.89 E-value=4.8e-22 Score=172.01 Aligned_cols=171 Identities=22% Similarity=0.215 Sum_probs=138.3
Q ss_pred CCCeEECCCC----------CCCCEEeCCCCcCccccCcCccCCCCccEEeCCCCccccCCCccccCCCCCCEEEccCCc
Q 019924 29 NMTQLNFDSN----------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQ 98 (334)
Q Consensus 29 ~L~~L~l~~n----------~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~ 98 (334)
+.+.++++++ +++++|++++|++++..+..|..+++|++|++++|+++...+..|.++++|++|++++|+
T Consensus 17 ~~~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~ 96 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNK 96 (270)
T ss_dssp TTTEEECTTSCCSSCCSCCCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSC
T ss_pred CCCEEEccCCCCCccCCCCCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCc
Confidence 3556666665 468889999999887777788888999999999998886666667888899999999999
Q ss_pred CCcCCChhhhcCCCCCEEEeecccCcccCCCCCCCCCCCCccEEEecCCccccccchhhHHhHHhhhhcCCccccccccc
Q 019924 99 INDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMT 178 (334)
Q Consensus 99 l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~ 178 (334)
+++..+..+..+++|++|++++|++++..+..+ ..+++|++|++++|.+++..+..
T Consensus 97 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~Ls~n~l~~~~~~~---------------------- 152 (270)
T 2o6q_A 97 LQALPIGVFDQLVNLAELRLDRNQLKSLPPRVF--DSLTKLTYLSLGYNELQSLPKGV---------------------- 152 (270)
T ss_dssp CCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTT--TTCTTCCEEECCSSCCCCCCTTT----------------------
T ss_pred CCcCCHhHcccccCCCEEECCCCccCeeCHHHh--CcCcCCCEEECCCCcCCccCHhH----------------------
Confidence 888777778888899999999998876665544 78888999999999887643321
Q ss_pred CCCCCCceeeEEEEEeccchhhhhhhhheeEEEccCcccccCCchhhhCcCCCCeeeccCCccCCCC
Q 019924 179 PLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGLC 245 (334)
Q Consensus 179 ~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~l~ 245 (334)
+..+++|+.|+|++|++++..+..|.++++|+.|++++|+++++.
T Consensus 153 ----------------------~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 197 (270)
T 2o6q_A 153 ----------------------FDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVP 197 (270)
T ss_dssp ----------------------TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred ----------------------ccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCC
Confidence 223678999999999999777778999999999999999998654
No 60
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.89 E-value=3.5e-23 Score=175.91 Aligned_cols=182 Identities=18% Similarity=0.156 Sum_probs=113.7
Q ss_pred cccEEEcCCCCCCCCCCCCCCCCCeEECCCCCCCCEEeCCCCc-CccccCcCccCCCCccEEeCCC-CccccCCCccccC
Q 019924 8 TLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNN-FNGKIPRKFVKSCNLTSLNLNG-NRLEGPLPPSLVN 85 (334)
Q Consensus 8 ~L~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~L~L~~-n~l~~~~p~~l~~ 85 (334)
+|++|++++|.++++++..+.++..| ++|++++|+ ++...+..|.++++|++|++++ |++++..+..|.+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L--------~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~ 103 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNI--------SRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKE 103 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTC--------CEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEEC
T ss_pred cccEEEEeCCcceEECHHHccCCCCC--------cEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCC
Confidence 45666666666665555444444433 666666664 5544445566666666666665 6666545555666
Q ss_pred CCCCCEEEccCCcCCcCCChhhhcCCCCC---EEEeecc-cCcccCCCCCCCCCCCCcc-EEEecCCccccccchhhHHh
Q 019924 86 CHHLEVLNVGNNQINDNFPNWLEILPELQ---VLILRSN-RFWGPIGENTTIVPFPSLR-IIDLSHNEFTGVLLTGYLDN 160 (334)
Q Consensus 86 l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~---~L~L~~N-~l~~~~~~~~~~~~l~~L~-~L~Ls~N~l~~~~~~~~~~~ 160 (334)
+++|++|++++|++++ +|. +..+++|+ +|++++| ++++..+..+ ..+++|+ .|++++|.++.. +
T Consensus 104 l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~--~~l~~L~~~L~l~~n~l~~i-~------ 172 (239)
T 2xwt_C 104 LPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAF--QGLCNETLTLKLYNNGFTSV-Q------ 172 (239)
T ss_dssp CTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTT--TTTBSSEEEEECCSCCCCEE-C------
T ss_pred CCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccc--cchhcceeEEEcCCCCCccc-C------
Confidence 6666666666666655 343 55555555 6666666 5544333333 5566666 666666665522 2
Q ss_pred HHhhhhcCCcccccccccCCCCCCceeeEEEEEeccchhhhhhhhheeEEEccCcc-cccCCchhhhCc-CCCCeeeccC
Q 019924 161 FKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNK-FQGGIPEVVGKL-NLLKGLNISH 238 (334)
Q Consensus 161 l~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~p~~l~~l-~~L~~L~Ls~ 238 (334)
...+. .++|+.|++++|+ +++..+..|..+ ++|+.|++++
T Consensus 173 -------------------------------------~~~~~-~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~ 214 (239)
T 2xwt_C 173 -------------------------------------GYAFN-GTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQ 214 (239)
T ss_dssp -------------------------------------TTTTT-TCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTT
T ss_pred -------------------------------------HhhcC-CCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCC
Confidence 11122 2579999999995 987777889999 9999999999
Q ss_pred CccCCCCC
Q 019924 239 NNLTGLCG 246 (334)
Q Consensus 239 N~l~~l~~ 246 (334)
|+++++..
T Consensus 215 N~l~~l~~ 222 (239)
T 2xwt_C 215 TSVTALPS 222 (239)
T ss_dssp CCCCCCCC
T ss_pred CccccCCh
Confidence 99987543
No 61
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.89 E-value=1.7e-22 Score=192.76 Aligned_cols=135 Identities=21% Similarity=0.236 Sum_probs=114.0
Q ss_pred CcccEEEcCCCCCCCCCCCCCCCCCeEECCCC-------------CCCCEEeCCCCcCccccCcCccCCCCccEEeCCCC
Q 019924 7 ATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSN-------------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGN 73 (334)
Q Consensus 7 ~~L~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n-------------~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n 73 (334)
...+++|+++|.+++++...+++++.|++++| ++|++|++++|++++..|..|.++++|++|++++|
T Consensus 31 ~~~~~l~ls~~~L~~ip~~~~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 110 (562)
T 3a79_B 31 ELESMVDYSNRNLTHVPKDLPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHN 110 (562)
T ss_dssp --CCEEECTTSCCCSCCTTSCTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTS
T ss_pred CCCcEEEcCCCCCccCCCCCCCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCC
Confidence 44578999999999877766689999999988 68999999999999888999999999999999999
Q ss_pred ccccCCCccccCCCCCCEEEccCCcCCcC-CChhhhcCCCCCEEEeecccCcccCCCCCCCCCCCCc--cEEEecCCcc
Q 019924 74 RLEGPLPPSLVNCHHLEVLNVGNNQINDN-FPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSL--RIIDLSHNEF 149 (334)
Q Consensus 74 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~-~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L--~~L~Ls~N~l 149 (334)
+++ .+|.. .+++|++|++++|++++. .|..|+.+++|++|++++|++++. . +..+++| +.|++++|.+
T Consensus 111 ~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~--~~~l~~L~L~~L~L~~n~l 181 (562)
T 3a79_B 111 RLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---D--LLPVAHLHLSCILLDLVSY 181 (562)
T ss_dssp CCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---T--TGGGTTSCEEEEEEEESSC
T ss_pred cCC-ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---c--hhhhhhceeeEEEeecccc
Confidence 998 56665 799999999999999883 468899999999999999998642 2 2455555 8999998887
No 62
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.89 E-value=6.8e-23 Score=194.78 Aligned_cols=148 Identities=18% Similarity=0.128 Sum_probs=128.7
Q ss_pred CCcccEEEcCCCCCCCCCCCCCCCCCeEECCCC-------------CCCCEEeCCCCcCccccCcCccCCCCccEEeCCC
Q 019924 6 IATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSN-------------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNG 72 (334)
Q Consensus 6 l~~L~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n-------------~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~ 72 (334)
++...+.|.+++.++.++...+++|++|++++| ++|++|++++|++++..|..|..+++|++|++++
T Consensus 4 C~~~~~c~~~~~~l~~ip~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~ 83 (549)
T 2z81_A 4 CDASGVCDGRSRSFTSIPSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSD 83 (549)
T ss_dssp ECTTSEEECTTSCCSSCCSCCCTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTT
T ss_pred CCCCceEECCCCccccccccCCCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCC
Confidence 445556799999999988877789999999999 7899999999999988889999999999999999
Q ss_pred CccccCCCccccCCCCCCEEEccCCcCCcC-CChhhhcCCCCCEEEeecccCcccCC-CCCCCCCCCCccEEEecCCccc
Q 019924 73 NRLEGPLPPSLVNCHHLEVLNVGNNQINDN-FPNWLEILPELQVLILRSNRFWGPIG-ENTTIVPFPSLRIIDLSHNEFT 150 (334)
Q Consensus 73 n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~-~~~~l~~l~~L~~L~L~~N~l~~~~~-~~~~~~~l~~L~~L~Ls~N~l~ 150 (334)
|++++..|..|.++++|++|++++|.+++. .|..++.+++|++|++++|++.+.++ ..+ ..+++|++|++++|.++
T Consensus 84 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~--~~l~~L~~L~L~~n~l~ 161 (549)
T 2z81_A 84 NHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDF--AGLTSLNELEIKALSLR 161 (549)
T ss_dssp SCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTT--TTCCEEEEEEEEETTCC
T ss_pred CccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhh--hcccccCeeeccCCccc
Confidence 999977777799999999999999999863 56788999999999999998555555 334 88999999999999988
Q ss_pred cccch
Q 019924 151 GVLLT 155 (334)
Q Consensus 151 ~~~~~ 155 (334)
+..+.
T Consensus 162 ~~~~~ 166 (549)
T 2z81_A 162 NYQSQ 166 (549)
T ss_dssp EECTT
T ss_pred ccChh
Confidence 76543
No 63
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.89 E-value=1.1e-21 Score=188.68 Aligned_cols=153 Identities=16% Similarity=0.135 Sum_probs=114.3
Q ss_pred cEEEcCCCCCCCCCCCCCCCCCeEECCCC-------------CCCCEEeCCCCcCccccCcCccCCCCccEEeCCCCccc
Q 019924 10 YYLDLSNNFLTNIEYFPPTNMTQLNFDSN-------------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLE 76 (334)
Q Consensus 10 ~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n-------------~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~ 76 (334)
++++.+++.++.++..-.+++++|++++| ++|++|++++|++++..|..|.++++|++|++++|+++
T Consensus 14 ~~~~c~~~~l~~ip~~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~ 93 (606)
T 3vq2_A 14 ITYQCMDQKLSKVPDDIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQ 93 (606)
T ss_dssp TEEECTTSCCSSCCTTSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC
T ss_pred CceEccCCCcccCCCCCCCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCccc
Confidence 34555555555554444455555555555 45688888888888777888888888888888888888
Q ss_pred cCCCccccCCCCCCEEEccCCcCCcCCChhhhcCCCCCEEEeecccCcc-cCCCCCCCCCCCCccEEEecCCccccccch
Q 019924 77 GPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWG-PIGENTTIVPFPSLRIIDLSHNEFTGVLLT 155 (334)
Q Consensus 77 ~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~-~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 155 (334)
+..|..|.++++|++|++++|++++..+..++.+++|++|++++|++++ .+|..+ ..+++|++|++++|.+++..+.
T Consensus 94 ~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~--~~l~~L~~L~Ls~n~l~~~~~~ 171 (606)
T 3vq2_A 94 SFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYF--SNLTNLVHVDLSYNYIQTITVN 171 (606)
T ss_dssp CCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGG--GTCTTCCEEECCSSCCCEECTT
T ss_pred ccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhH--hhcCCCCEEEccCCcceecChh
Confidence 7778888888888888888888888776778888888888888888865 345544 7888888888888888876553
Q ss_pred hhHHhHHhhh
Q 019924 156 GYLDNFKAMM 165 (334)
Q Consensus 156 ~~~~~l~~L~ 165 (334)
. ++.+.++.
T Consensus 172 ~-~~~l~~L~ 180 (606)
T 3vq2_A 172 D-LQFLRENP 180 (606)
T ss_dssp T-THHHHHCT
T ss_pred h-hhhhhccc
Confidence 3 55666553
No 64
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.89 E-value=5.2e-22 Score=189.45 Aligned_cols=226 Identities=16% Similarity=0.116 Sum_probs=131.8
Q ss_pred CcccEEEcCCCCCCCCCCCCCCCCCeEECCCCCCCCEEeCCCCcCccccCcCccCCCCccEEeCCCCccccCCCccccCC
Q 019924 7 ATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNC 86 (334)
Q Consensus 7 ~~L~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l 86 (334)
+++++||+++|.++++++..+.++.. |++|++++|++++..|..|.++++|++|++++|++++..|..|.++
T Consensus 28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~--------L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 99 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPE--------LQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGL 99 (570)
T ss_dssp SSCCEEECCSCCCCEECTTTTTTCSS--------CCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTC
T ss_pred ccccEEEccCCccCccChhHhhCCCC--------ceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCc
Confidence 45777788888777766543333333 3666666666665556666666666666666666665555666666
Q ss_pred CCCCEEEccCCcCCcCCChhhhcCCCCCEEEeecccCcc-cCCCCCCCCCCCCccEEEecCCccccccchhhHHhHHhh-
Q 019924 87 HHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWG-PIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAM- 164 (334)
Q Consensus 87 ~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~-~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L- 164 (334)
++|++|++++|++++..+..++.+++|++|++++|.+++ .+|..+ ..+++|+.|++++|.+++..+. .++.+.++
T Consensus 100 ~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~--~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~ 176 (570)
T 2z63_A 100 SSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYF--SNLTNLEHLDLSSNKIQSIYCT-DLRVLHQMP 176 (570)
T ss_dssp TTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGG--GGCTTCCEEECTTSCCCEECGG-GGHHHHTCT
T ss_pred cccccccccccccccCCCccccccccccEEecCCCccceecChhhh--cccCCCCEEeCcCCccceecHH-Hccchhccc
Confidence 666666666666666444456666666666666666654 234433 5666666666666666654432 24444444
Q ss_pred ---hhcCCcccccccccCCC--------------------------------------------------------CCCc
Q 019924 165 ---MHGNNISVEVDYMTPLN--------------------------------------------------------SSNY 185 (334)
Q Consensus 165 ---~~~~~~~~~~~~~~~~~--------------------------------------------------------~~~~ 185 (334)
..++.....+....... ....
T Consensus 177 ~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~ 256 (570)
T 2z63_A 177 LLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCN 256 (570)
T ss_dssp TCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGG
T ss_pred hhhhhcccCCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccc
Confidence 11111111111000000 0000
Q ss_pred eeeEEE------EEeccchhhhhhhhheeEEEccCcccccCCchhhhCcCCCCeeeccCCccCCCC
Q 019924 186 YESIIL------TIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGLC 245 (334)
Q Consensus 186 l~~~~~------~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~l~ 245 (334)
+....+ ...+.....+..+++|+.|++++|.++ .+|..+..+ +|+.|++++|.++.+.
T Consensus 257 l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~~l~ 320 (570)
T 2z63_A 257 LTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFGQFP 320 (570)
T ss_dssp SEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCSSCC
T ss_pred cchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccC-CccEEeeccCcccccC
Confidence 011111 122333445566788999999999988 688888888 8889999988887543
No 65
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.89 E-value=2.3e-22 Score=187.44 Aligned_cols=203 Identities=22% Similarity=0.249 Sum_probs=107.9
Q ss_pred CCcccEEEcCCCCCCCCCC-CCCCCCCeEECCCC-----------CCCCEEeCCCCcCccccCcCccCCCCccEEeCCCC
Q 019924 6 IATLYYLDLSNNFLTNIEY-FPPTNMTQLNFDSN-----------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGN 73 (334)
Q Consensus 6 l~~L~~L~Ls~n~l~~~~~-~~~~~L~~L~l~~n-----------~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n 73 (334)
+++|++|++++|.+++... ..+++|+.|++++| ++|++|++++|++++. ..+..+++|+.|++++|
T Consensus 176 l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n 253 (466)
T 1o6v_A 176 LTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANN 253 (466)
T ss_dssp CTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSS
T ss_pred CCCCCEEECcCCcCCCChhhccCCCCCEEEecCCcccccccccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCC
Confidence 4555555555555554433 34445555555544 3455555555555422 23444555555555555
Q ss_pred ccccCCCccccCCCCCCEEEccCCcCCcCCChhhhcCCCCCEEEeecccCcccCCCCCCCCCCCCccEEEecCCcccccc
Q 019924 74 RLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVL 153 (334)
Q Consensus 74 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 153 (334)
++++..| +..+++|++|++++|.+++..+ +..+++|++|++++|++++..+ +..+++|+.|++++|++++..
T Consensus 254 ~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~----~~~l~~L~~L~L~~n~l~~~~ 325 (466)
T 1o6v_A 254 QISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP----ISNLKNLTYLTLYFNNISDIS 325 (466)
T ss_dssp CCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG----GGGCTTCSEEECCSSCCSCCG
T ss_pred ccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh----hcCCCCCCEEECcCCcCCCch
Confidence 5543322 4455555555555555544222 4455555555555555543222 244555555555555555443
Q ss_pred chhhHHhHHhhhhcCCcccccccccCCCCCCceeeEEEEEeccchhhhhhhhheeEEEccCcccccCCchhhhCcCCCCe
Q 019924 154 LTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKG 233 (334)
Q Consensus 154 ~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~ 233 (334)
+ +..+++|+.++.. .+.+.++ ..+..+++|+.|++++|++++..| +..+++|+.
T Consensus 326 ~---~~~l~~L~~L~l~-------------------~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~ 379 (466)
T 1o6v_A 326 P---VSSLTKLQRLFFY-------------------NNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQ 379 (466)
T ss_dssp G---GGGCTTCCEEECC-------------------SSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCE
T ss_pred h---hccCccCCEeECC-------------------CCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCE
Confidence 3 2222222222221 1111222 234457889999999999987766 788999999
Q ss_pred eeccCCccCCC
Q 019924 234 LNISHNNLTGL 244 (334)
Q Consensus 234 L~Ls~N~l~~l 244 (334)
|++++|+++++
T Consensus 380 L~l~~n~~~~~ 390 (466)
T 1o6v_A 380 LGLNDQAWTNA 390 (466)
T ss_dssp EECCCEEEECC
T ss_pred EeccCCcccCC
Confidence 99999998875
No 66
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.88 E-value=6e-22 Score=173.14 Aligned_cols=170 Identities=19% Similarity=0.149 Sum_probs=138.5
Q ss_pred CCCCCCeEECCCC----------CCCCEEeCCCCcCccccCcCccCCCCccEEeCCCCccccCCCccccCCCCCCEEEcc
Q 019924 26 PPTNMTQLNFDSN----------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVG 95 (334)
Q Consensus 26 ~~~~L~~L~l~~n----------~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls 95 (334)
.+++++.++++++ +.+++|++++|++++..+..|..+++|++|++++|++++..+ ...+++|++|+++
T Consensus 8 ~l~~l~~l~~~~~~l~~ip~~~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~Ls 85 (290)
T 1p9a_G 8 KVASHLEVNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVLGTLDLS 85 (290)
T ss_dssp CSTTCCEEECTTSCCSSCCSCCCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTCCEEECC
T ss_pred ccCCccEEECCCCCCCcCCCCCCCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcCCEEECC
Confidence 3566777777776 578899999999988888889999999999999999885433 2678899999999
Q ss_pred CCcCCcCCChhhhcCCCCCEEEeecccCcccCCCCCCCCCCCCccEEEecCCccccccchhhHHhHHhhhhcCCcccccc
Q 019924 96 NNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVD 175 (334)
Q Consensus 96 ~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~~~~~~~~~~ 175 (334)
+|+++. +|..+..+++|++|++++|++++..+..+ ..+++|+.|++++|++++..+..
T Consensus 86 ~N~l~~-l~~~~~~l~~L~~L~l~~N~l~~l~~~~~--~~l~~L~~L~L~~N~l~~~~~~~------------------- 143 (290)
T 1p9a_G 86 HNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGAL--RGLGELQELYLKGNELKTLPPGL------------------- 143 (290)
T ss_dssp SSCCSS-CCCCTTTCTTCCEEECCSSCCCCCCSSTT--TTCTTCCEEECTTSCCCCCCTTT-------------------
T ss_pred CCcCCc-CchhhccCCCCCEEECCCCcCcccCHHHH--cCCCCCCEEECCCCCCCccChhh-------------------
Confidence 999886 67778888999999999999876655555 78889999999999888654321
Q ss_pred cccCCCCCCceeeEEEEEeccchhhhhhhhheeEEEccCcccccCCchhhhCcCCCCeeeccCCccCCC
Q 019924 176 YMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGL 244 (334)
Q Consensus 176 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~l 244 (334)
+..+++|+.|+|++|++++..+..+..+++|+.|++++|+++.+
T Consensus 144 -------------------------~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~i 187 (290)
T 1p9a_G 144 -------------------------LTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTI 187 (290)
T ss_dssp -------------------------TTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred -------------------------cccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCcc
Confidence 12267899999999999966667788999999999999999864
No 67
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.88 E-value=3.2e-22 Score=186.50 Aligned_cols=138 Identities=24% Similarity=0.295 Sum_probs=78.9
Q ss_pred CCCcccEEEcCCCCCCCCCC-CCCCCCCeEECCCC-----------CCCCEEeCCCCcCccccCcCccCCCCccEEeCCC
Q 019924 5 GIATLYYLDLSNNFLTNIEY-FPPTNMTQLNFDSN-----------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNG 72 (334)
Q Consensus 5 ~l~~L~~L~Ls~n~l~~~~~-~~~~~L~~L~l~~n-----------~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~ 72 (334)
.+++|++|++++|.+++.++ ..+++|++|++++| ++|++|++++|++++..+ +..+++|++|++++
T Consensus 66 ~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~ 143 (466)
T 1o6v_A 66 YLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSS 143 (466)
T ss_dssp GCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG--GTTCTTCSEEEEEE
T ss_pred hhcCCCEEECCCCccCCchhhhccccCCEEECCCCccccChhhcCCCCCCEEECCCCCCCCChH--HcCCCCCCEEECCC
Confidence 45677777777777776655 55667777777666 567777777777764322 66666666666666
Q ss_pred CccccCCCc--------------------cccCCCCCCEEEccCCcCCcCCChhhhcCCCCCEEEeecccCcccCCCCCC
Q 019924 73 NRLEGPLPP--------------------SLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTT 132 (334)
Q Consensus 73 n~l~~~~p~--------------------~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~ 132 (334)
|++++. +. .+.++++|++|++++|.+++. ..+..+++|++|++++|.+++..+
T Consensus 144 n~l~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~---- 216 (466)
T 1o6v_A 144 NTISDI-SALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP---- 216 (466)
T ss_dssp EEECCC-GGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG----
T ss_pred CccCCC-hhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCC--hhhccCCCCCEEEecCCccccccc----
Confidence 665532 11 134455555566666655542 234555556666666555543322
Q ss_pred CCCCCCccEEEecCCcccc
Q 019924 133 IVPFPSLRIIDLSHNEFTG 151 (334)
Q Consensus 133 ~~~l~~L~~L~Ls~N~l~~ 151 (334)
+..+++|+.|++++|.+++
T Consensus 217 ~~~l~~L~~L~l~~n~l~~ 235 (466)
T 1o6v_A 217 LGILTNLDELSLNGNQLKD 235 (466)
T ss_dssp GGGCTTCCEEECCSSCCCC
T ss_pred ccccCCCCEEECCCCCccc
Confidence 1334445555555554443
No 68
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.88 E-value=2.9e-22 Score=166.58 Aligned_cols=170 Identities=21% Similarity=0.169 Sum_probs=122.3
Q ss_pred cEEEcCCCCCCCCCCCCCCCCCeEECCCCCCCCEEeCCCCcCccccCcCccCCCCccEEeCCCCccccCCCccccCCCCC
Q 019924 10 YYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHL 89 (334)
Q Consensus 10 ~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L 89 (334)
+.++++++.++.++....+++ ++|++++|++++..+..|..+++|++|++++|++++..+..|.++++|
T Consensus 10 ~~v~c~~~~l~~~p~~~~~~l-----------~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 78 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTGIPAQT-----------TYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSL 78 (208)
T ss_dssp TEEECCSSCCSSCCSCCCTTC-----------SEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTC
T ss_pred CEEEecCCCccCCCCCCCCCC-----------cEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCc
Confidence 567788888777665433333 677888888886666677888888888888888886666667788888
Q ss_pred CEEEccCCcCCcCCChhhhcCCCCCEEEeecccCcccCCCCCCCCCCCCccEEEecCCccccccchhhHHhHHhhhhcCC
Q 019924 90 EVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNN 169 (334)
Q Consensus 90 ~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~~~~ 169 (334)
++|++++|++++..+..+..+++|++|++++|++++..+..+ ..+++|+.|++++|.+++..+.. +
T Consensus 79 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~l~~N~l~~~~~~~-~----------- 144 (208)
T 2o6s_A 79 TYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVF--DKLTQLKDLRLYQNQLKSVPDGV-F----------- 144 (208)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT--TTCTTCCEEECCSSCCSCCCTTT-T-----------
T ss_pred CEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHh--ccCCcCCEEECCCCccceeCHHH-h-----------
Confidence 888888888887666667888888888888888875554434 67888888888888887543321 1
Q ss_pred cccccccccCCCCCCceeeEEEEEeccchhhhhhhhheeEEEccCcccccCCchhhhCcCCCCeeeccCCccCC
Q 019924 170 ISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTG 243 (334)
Q Consensus 170 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 243 (334)
..+++|+.|++++|.+.+ .++.|+.|+++.|+++|
T Consensus 145 --------------------------------~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g 179 (208)
T 2o6s_A 145 --------------------------------DRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSG 179 (208)
T ss_dssp --------------------------------TTCTTCCEEECCSCCBCC-------CTTTTHHHHHHHHHCTT
T ss_pred --------------------------------ccCCCccEEEecCCCeec-------CCCCHHHHHHHHHhCCc
Confidence 125567777777777663 34467777777777765
No 69
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.88 E-value=2.1e-23 Score=184.85 Aligned_cols=207 Identities=18% Similarity=0.154 Sum_probs=169.4
Q ss_pred cCCCcccEEEcCCCCCCCCCC-CCCCCCCeEECCCC--------CCCCEEeCCCCcCccccCcCccCCCCccEEeCCCCc
Q 019924 4 LGIATLYYLDLSNNFLTNIEY-FPPTNMTQLNFDSN--------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNR 74 (334)
Q Consensus 4 ~~l~~L~~L~Ls~n~l~~~~~-~~~~~L~~L~l~~n--------~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~ 74 (334)
.++++|++|++++|.+++.++ ..+++|+.|++++| ++|++|++++|++++..+.. +++|++|++++|+
T Consensus 55 ~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~N~ 131 (317)
T 3o53_A 55 APFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSR---GQGKKNIYLANNK 131 (317)
T ss_dssp TTCTTCCEEECTTSCCEEEEEETTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCCSEEEECC---CSSCEEEECCSSC
T ss_pred hCCCcCCEEECCCCcCCcchhhhhcCCCCEEECcCCccccccCCCCcCEEECCCCccCCcCccc---cCCCCEEECCCCC
Confidence 367999999999999987766 77899999999999 79999999999999765544 5789999999999
Q ss_pred cccCCCccccCCCCCCEEEccCCcCCcCCChhh-hcCCCCCEEEeecccCcccCCCCCCCCCCCCccEEEecCCcccccc
Q 019924 75 LEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWL-EILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVL 153 (334)
Q Consensus 75 l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l-~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 153 (334)
+++..+..+..+++|++|++++|.+++..+..+ ..+++|++|++++|++++.... ..+++|+.|++++|.+++..
T Consensus 132 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~----~~l~~L~~L~Ls~N~l~~l~ 207 (317)
T 3o53_A 132 ITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQ----VVFAKLKTLDLSSNKLAFMG 207 (317)
T ss_dssp CCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECC----CCCTTCCEEECCSSCCCEEC
T ss_pred CCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcccccc----cccccCCEEECCCCcCCcch
Confidence 998778889999999999999999998777766 4789999999999999765222 35899999999999999765
Q ss_pred chhhHHhHHhhhhcCCcccccccccCCCCCCceeeEEEEEeccchhhhhhhhheeEEEccCcccc-cCCchhhhCcCCCC
Q 019924 154 LTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQ-GGIPEVVGKLNLLK 232 (334)
Q Consensus 154 ~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~p~~l~~l~~L~ 232 (334)
+. +..+++|..++...+.+.. ++. .+..+++|+.|++++|.++ +.+|..+..+++|+
T Consensus 208 ~~--~~~l~~L~~L~L~~N~l~~-------------------l~~-~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~ 265 (317)
T 3o53_A 208 PE--FQSAAGVTWISLRNNKLVL-------------------IEK-ALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQ 265 (317)
T ss_dssp GG--GGGGTTCSEEECTTSCCCE-------------------ECT-TCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHH
T ss_pred hh--hcccCcccEEECcCCcccc-------------------hhh-HhhcCCCCCEEEccCCCccCcCHHHHHhccccce
Confidence 43 5666666665553332221 111 1234789999999999998 78899999999999
Q ss_pred eeeccCC
Q 019924 233 GLNISHN 239 (334)
Q Consensus 233 ~L~Ls~N 239 (334)
.+++++|
T Consensus 266 ~l~l~~~ 272 (317)
T 3o53_A 266 TVAKQTV 272 (317)
T ss_dssp HHHHHHH
T ss_pred EEECCCc
Confidence 9999954
No 70
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.88 E-value=9.3e-22 Score=182.65 Aligned_cols=135 Identities=25% Similarity=0.247 Sum_probs=104.3
Q ss_pred CCCcccEEEcCCCCCCCCCC-CCCCCCCeEECCCC----------CCCCEEeCCCCcCccccCcCccCCCCccEEeCCCC
Q 019924 5 GIATLYYLDLSNNFLTNIEY-FPPTNMTQLNFDSN----------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGN 73 (334)
Q Consensus 5 ~l~~L~~L~Ls~n~l~~~~~-~~~~~L~~L~l~~n----------~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n 73 (334)
++++|++|++++|.+++.+. ..+++|++|++++| ++|++|++++|++++. | ++.+++|++|++++|
T Consensus 40 ~l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~L~~N 116 (457)
T 3bz5_A 40 QLATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITTLDLSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLNCDTN 116 (457)
T ss_dssp HHTTCCEEECCSSCCCCCTTGGGCTTCSEEECCSSCCSCCCCTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEECCSS
T ss_pred HcCCCCEEEccCCCcccChhhcccCCCCEEEccCCcCCeEccccCCCCCEEECcCCCCcee-e--cCCCCcCCEEECCCC
Confidence 46888999999999888754 56778888888887 6788888888888854 3 778888888888888
Q ss_pred ccccCCCccccCCCCCCEEEccCCcCCcCCChhhhcCCCCCEEEeecccCcccCCCCCCCCCCCCccEEEecCCccccc
Q 019924 74 RLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGV 152 (334)
Q Consensus 74 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 152 (334)
++++ +| +..+++|++|++++|++++. + ++.+++|++|++++|+..+.+ .+..+++|+.|++++|++++.
T Consensus 117 ~l~~-l~--~~~l~~L~~L~l~~N~l~~l-~--l~~l~~L~~L~l~~n~~~~~~----~~~~l~~L~~L~ls~n~l~~l 185 (457)
T 3bz5_A 117 KLTK-LD--VSQNPLLTYLNCARNTLTEI-D--VSHNTQLTELDCHLNKKITKL----DVTPQTQLTTLDCSFNKITEL 185 (457)
T ss_dssp CCSC-CC--CTTCTTCCEEECTTSCCSCC-C--CTTCTTCCEEECTTCSCCCCC----CCTTCTTCCEEECCSSCCCCC
T ss_pred cCCe-ec--CCCCCcCCEEECCCCcccee-c--cccCCcCCEEECCCCCccccc----ccccCCcCCEEECCCCcccee
Confidence 8885 44 77888888888888888873 3 667788888888888544443 236677888888888887764
No 71
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.88 E-value=5.9e-23 Score=192.29 Aligned_cols=205 Identities=18% Similarity=0.159 Sum_probs=169.5
Q ss_pred cCCCcccEEEcCCCCCCCCCC-CCCCCCCeEECCCC--------CCCCEEeCCCCcCccccCcCccCCCCccEEeCCCCc
Q 019924 4 LGIATLYYLDLSNNFLTNIEY-FPPTNMTQLNFDSN--------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNR 74 (334)
Q Consensus 4 ~~l~~L~~L~Ls~n~l~~~~~-~~~~~L~~L~l~~n--------~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~ 74 (334)
.++++|++|+|++|.+++.++ ..+++|+.|++++| ++|++|++++|.+++..+.. +++|+.|++++|.
T Consensus 55 ~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l~~~~~L~~L~L~~N~l~~~~~~~---l~~L~~L~L~~N~ 131 (487)
T 3oja_A 55 APFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSR---GQGKKNIYLANNK 131 (487)
T ss_dssp TTCTTCCEEECTTSCCEEEEECTTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCCCCEEECC---CSSCEEEECCSSC
T ss_pred hCCCCCCEEEeeCCCCCCCcccccCCCCCEEEecCCcCCCCCCCCCcCEEECcCCcCCCCCccc---cCCCCEEECCCCC
Confidence 468999999999999987766 77899999999999 78999999999999766543 5789999999999
Q ss_pred cccCCCccccCCCCCCEEEccCCcCCcCCChhhh-cCCCCCEEEeecccCcccCCCCCCCCCCCCccEEEecCCcccccc
Q 019924 75 LEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLE-ILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVL 153 (334)
Q Consensus 75 l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~-~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 153 (334)
+++..|..+.++++|++|++++|.+++..|..+. .+++|++|+|++|.+++..+. ..+++|+.|++++|.+++.+
T Consensus 132 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~~----~~l~~L~~L~Ls~N~l~~~~ 207 (487)
T 3oja_A 132 ITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQ----VVFAKLKTLDLSSNKLAFMG 207 (487)
T ss_dssp CCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECC----CCCTTCCEEECCSSCCCEEC
T ss_pred CCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccccccc----ccCCCCCEEECCCCCCCCCC
Confidence 9988888999999999999999999998888776 799999999999999766332 45899999999999999865
Q ss_pred chhhHHhHHhhhhcCCcccccccccCCCCCCceeeEEEEEeccchhhhhhhhheeEEEccCcccc-cCCchhhhCcCCCC
Q 019924 154 LTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQ-GGIPEVVGKLNLLK 232 (334)
Q Consensus 154 ~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~p~~l~~l~~L~ 232 (334)
+. +..++.|..++...+.+.. ++. .+..+++|+.|++++|.+. +.+|..+..++.|+
T Consensus 208 ~~--~~~l~~L~~L~Ls~N~l~~-------------------lp~-~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~ 265 (487)
T 3oja_A 208 PE--FQSAAGVTWISLRNNKLVL-------------------IEK-ALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQ 265 (487)
T ss_dssp GG--GGGGTTCSEEECTTSCCCE-------------------ECT-TCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHH
T ss_pred Hh--HcCCCCccEEEecCCcCcc-------------------cch-hhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCc
Confidence 53 5666666665553332221 111 1233688999999999998 67888899999999
Q ss_pred eeecc
Q 019924 233 GLNIS 237 (334)
Q Consensus 233 ~L~Ls 237 (334)
.++++
T Consensus 266 ~l~~~ 270 (487)
T 3oja_A 266 TVAKQ 270 (487)
T ss_dssp HHHHH
T ss_pred EEecc
Confidence 99886
No 72
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.88 E-value=8.3e-22 Score=182.97 Aligned_cols=225 Identities=20% Similarity=0.182 Sum_probs=153.7
Q ss_pred CCCcccEEEcCCCCCCCCCCCCCCCCCeEECCCC----------CCCCEEeCCCCcCccccCcCccCCCCccEEeCCCCc
Q 019924 5 GIATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSN----------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNR 74 (334)
Q Consensus 5 ~l~~L~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n----------~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~ 74 (334)
++++|++|++++|.+++++...+++|+.|++++| ++|++|++++|+..+.+ .+..+++|++|++++|+
T Consensus 104 ~l~~L~~L~L~~N~l~~l~~~~l~~L~~L~l~~N~l~~l~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~ 181 (457)
T 3bz5_A 104 PLTKLTYLNCDTNKLTKLDVSQNPLLTYLNCARNTLTEIDVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNK 181 (457)
T ss_dssp TCTTCCEEECCSSCCSCCCCTTCTTCCEEECTTSCCSCCCCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSC
T ss_pred CCCcCCEEECCCCcCCeecCCCCCcCCEEECCCCccceeccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCc
Confidence 5788999999999998876677888888888887 67888999888655454 47788889999999998
Q ss_pred cccCCCccccCCCCCCEEEccCCcCCcCCChhhhcCCCCCEEEeecccCcccCCCCCCCCCCCCccEEEecCCccccccc
Q 019924 75 LEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLL 154 (334)
Q Consensus 75 l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 154 (334)
+++ +| +..+++|+.|++++|++++. .++.+++|++|++++|++++ +| + ..+++|+.|++++|++++..+
T Consensus 182 l~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~--~~l~~L~~L~l~~N~l~~~~~ 250 (457)
T 3bz5_A 182 ITE-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--V--TPLTQLTYFDCSVNPLTELDV 250 (457)
T ss_dssp CCC-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--C--TTCTTCSEEECCSSCCSCCCC
T ss_pred cce-ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--c--cccCCCCEEEeeCCcCCCcCH
Confidence 885 44 77888888999988888874 37788888888888888876 33 3 678888888888888887643
Q ss_pred hhhHHhHHhh-------hhcCCccccc-cc--ccCCCCCC--------ceeeEEEEEeccchhhhhhhhheeEEEccCcc
Q 019924 155 TGYLDNFKAM-------MHGNNISVEV-DY--MTPLNSSN--------YYESIILTIKGIDIKMERILTIFMTIDLSSNK 216 (334)
Q Consensus 155 ~~~~~~l~~L-------~~~~~~~~~~-~~--~~~~~~~~--------~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~ 216 (334)
..+.+++.+ ..++...... .. ........ ...........+..-.+..+++|++|++++|+
T Consensus 251 -~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~ 329 (457)
T 3bz5_A 251 -STLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTE 329 (457)
T ss_dssp -TTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCC
T ss_pred -HHCCCCCEEeccCCCCCEEECCCCccCCcccccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCc
Confidence 223333322 1111111000 00 00001111 11111111111111123446889999999999
Q ss_pred cccCCchhhhCcCCCCeeeccCCccCCCCC
Q 019924 217 FQGGIPEVVGKLNLLKGLNISHNNLTGLCG 246 (334)
Q Consensus 217 l~~~~p~~l~~l~~L~~L~Ls~N~l~~l~~ 246 (334)
+++. + +.++++|+.|++++|+++++..
T Consensus 330 l~~l-~--l~~l~~L~~L~l~~N~l~~l~~ 356 (457)
T 3bz5_A 330 LTEL-D--VSHNTKLKSLSCVNAHIQDFSS 356 (457)
T ss_dssp CSCC-C--CTTCTTCSEEECCSSCCCBCTT
T ss_pred cccc-c--cccCCcCcEEECCCCCCCCccc
Confidence 9974 3 8899999999999999998643
No 73
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.88 E-value=1.7e-21 Score=166.66 Aligned_cols=192 Identities=22% Similarity=0.200 Sum_probs=150.6
Q ss_pred CcccEEEcCCCCCCCCCCCCCCCCCeEECCCCCCCCEEeCCCCcCccccCcCccCCCCccEEeCCCCccccCCCccccCC
Q 019924 7 ATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNC 86 (334)
Q Consensus 7 ~~L~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l 86 (334)
++++.|++++|.+++..+..+.++..| ++|++++|++++..+..|..+++|++|++++|++++..+..|..+
T Consensus 35 ~~l~~L~L~~n~l~~~~~~~~~~l~~L--------~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 106 (251)
T 3m19_A 35 ADTEKLDLQSTGLATLSDATFRGLTKL--------TWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHL 106 (251)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTCTTC--------CEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTC
T ss_pred CCCCEEEccCCCcCccCHhHhcCcccC--------CEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhccc
Confidence 579999999999999888777777665 999999999998888889999999999999999998778889999
Q ss_pred CCCCEEEccCCcCCcCCChhhhcCCCCCEEEeecccCcccCCCCCCCCCCCCccEEEecCCccccccchhhHHhHHhhhh
Q 019924 87 HHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMH 166 (334)
Q Consensus 87 ~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~ 166 (334)
++|++|++++|++++..+..+..+++|++|++++|++++..+..+ ..+++|+.|++++|++++..+.. +
T Consensus 107 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~--~~l~~L~~L~L~~N~l~~~~~~~-~-------- 175 (251)
T 3m19_A 107 TQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAF--DKLTNLQTLSLSTNQLQSVPHGA-F-------- 175 (251)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT--TTCTTCCEEECCSSCCSCCCTTT-T--------
T ss_pred CCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHc--CcCcCCCEEECCCCcCCccCHHH-H--------
Confidence 999999999999999777788999999999999999986666555 88999999999999998765422 1
Q ss_pred cCCcccccccccCCCCCCceeeEEEEEeccchhhhhhhhheeEEEccCcccccCCc------hhhhCcCCCCeeeccCCc
Q 019924 167 GNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIP------EVVGKLNLLKGLNISHNN 240 (334)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p------~~l~~l~~L~~L~Ls~N~ 240 (334)
..+++|+.|+|++|.++...+ .++.. ...+..+..++.
T Consensus 176 -----------------------------------~~l~~L~~L~l~~N~~~c~~~~~~~l~~~~~~-~~~~~~~~~~~~ 219 (251)
T 3m19_A 176 -----------------------------------DRLGKLQTITLFGNQFDCSRCEILYLSQWIRE-NSNKVKDGTGQN 219 (251)
T ss_dssp -----------------------------------TTCTTCCEEECCSCCBCTTSTTHHHHHHHHHH-SGGGBCC-----
T ss_pred -----------------------------------hCCCCCCEEEeeCCceeCCccccHHHHHHHHh-cccceeeccCcc
Confidence 126789999999999986632 22221 122233444544
Q ss_pred cCCCCCCCccCCCCCC
Q 019924 241 LTGLCGFPLLESCNID 256 (334)
Q Consensus 241 l~~l~~~~~~~~c~~~ 256 (334)
+++.|....|...
T Consensus 220 ---~~~~~~~~~C~~~ 232 (251)
T 3m19_A 220 ---LHESPDGVTCSDG 232 (251)
T ss_dssp -----CCGGGCBBTTS
T ss_pred ---cccCCCcCccCCC
Confidence 3556666667653
No 74
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.88 E-value=5.6e-22 Score=178.78 Aligned_cols=183 Identities=25% Similarity=0.228 Sum_probs=152.8
Q ss_pred cEEEcCCCCCCCCCCCCCCCCCeEECCCCCCCCEEeCCCCcCccccCcCcc-CCCCccEEeCCCCccccCCCccccCCCC
Q 019924 10 YYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFV-KSCNLTSLNLNGNRLEGPLPPSLVNCHH 88 (334)
Q Consensus 10 ~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n~~L~~L~Ls~N~l~~~~p~~~~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~ 88 (334)
++++++++.++.++..-... +++|+|++|+|++..+..|. .+++|++|+|++|+|++..+..|.++++
T Consensus 21 ~~l~c~~~~l~~iP~~~~~~-----------l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~ 89 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSLPSY-----------TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPN 89 (361)
T ss_dssp TEEECCSSCCSSCCSSCCTT-----------CSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTT
T ss_pred CEEEeCCCCcCccCccCCCC-----------CCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCC
Confidence 57899999998876533333 37889999999988888887 9999999999999999888888999999
Q ss_pred CCEEEccCCcCCcCCChhhhcCCCCCEEEeecccCcccCCCCCCCCCCCCccEEEecCCccccccchhhHHhHHhhhhcC
Q 019924 89 LEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGN 168 (334)
Q Consensus 89 L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~~~ 168 (334)
|++|+|++|+++...+..|..+++|++|+|++|++++..+..+ ..+++|+.|+|++|.+++..+.. +..+
T Consensus 90 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~--~~l~~L~~L~L~~N~l~~l~~~~-~~~~------- 159 (361)
T 2xot_A 90 LRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAF--EDMAQLQKLYLSQNQISRFPVEL-IKDG------- 159 (361)
T ss_dssp CCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTT--TTCTTCCEEECCSSCCCSCCGGG-TC---------
T ss_pred CCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHh--CCcccCCEEECCCCcCCeeCHHH-hcCc-------
Confidence 9999999999999888889999999999999999987767655 88999999999999998654321 1110
Q ss_pred CcccccccccCCCCCCceeeEEEEEeccchhhhhhhhheeEEEccCcccccCCchhhhCcCC--CCeeeccCCccCCCCC
Q 019924 169 NISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNL--LKGLNISHNNLTGLCG 246 (334)
Q Consensus 169 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~--L~~L~Ls~N~l~~l~~ 246 (334)
..+++|+.|||++|+|++..+..+..++. ++.|++++|++.+-|.
T Consensus 160 ---------------------------------~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C~C~ 206 (361)
T 2xot_A 160 ---------------------------------NKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLECDCK 206 (361)
T ss_dssp -----------------------------------CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEECCHH
T ss_pred ---------------------------------ccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCccCCcC
Confidence 12678999999999999766678888887 4889999999987664
No 75
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.87 E-value=1e-21 Score=170.41 Aligned_cols=203 Identities=21% Similarity=0.163 Sum_probs=156.1
Q ss_pred cEEEcCCCCCCCCCCCCCCCCCeEECCCCCCCCEEeCCCCcCccccCcCccCCCCccEEeCCCCccccCCCccccCCCCC
Q 019924 10 YYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHL 89 (334)
Q Consensus 10 ~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L 89 (334)
...+.++..++.++..-.+ ++++|++++|++++..+..|..+++|++|++++|++++..+..|.++++|
T Consensus 10 ~~~~c~~~~l~~ip~~l~~-----------~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 78 (276)
T 2z62_A 10 ITYQCMELNFYKIPDNLPF-----------STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHL 78 (276)
T ss_dssp TEEECTTSCCSSCCSSSCT-----------TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTC
T ss_pred ceEEecCCCccccCCCCCC-----------CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCC
Confidence 3567777777766543222 34888999999998777799999999999999999997778889999999
Q ss_pred CEEEccCCcCCcCCChhhhcCCCCCEEEeecccCcccCCCCCCCCCCCCccEEEecCCccccccchhhHHhHHhhhhcCC
Q 019924 90 EVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNN 169 (334)
Q Consensus 90 ~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~~~~ 169 (334)
++|++++|.+++..+..+..+++|++|++++|++++..+..+ ..+++|++|++++|.+++......+..+++|+.++.
T Consensus 79 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~L 156 (276)
T 2z62_A 79 STLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPI--GHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDL 156 (276)
T ss_dssp CEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCC--TTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEEC
T ss_pred CEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhc--ccCCCCCEEECcCCccceecCchhhccCCCCCEEEC
Confidence 999999999999888899999999999999999977655544 889999999999999987532233566666555444
Q ss_pred cccccccccCCCCCCceeeEEEEEeccchhhhhhhhhee----EEEccCcccccCCchhhhCcCCCCeeeccCCccCCCC
Q 019924 170 ISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFM----TIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGLC 245 (334)
Q Consensus 170 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~----~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~l~ 245 (334)
..+ .+..++...+..+++|+ .|++++|.+++..+..+ ...+|+.|++++|+++++.
T Consensus 157 s~N-------------------~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~ 216 (276)
T 2z62_A 157 SSN-------------------KIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF-KEIRLKELALDTNQLKSVP 216 (276)
T ss_dssp CSS-------------------CCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSS-CSCCEEEEECCSSCCSCCC
T ss_pred CCC-------------------CCCcCCHHHhhhhhhccccceeeecCCCcccccCcccc-CCCcccEEECCCCceeecC
Confidence 222 12223334444556666 89999999985555444 4458999999999998654
No 76
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.86 E-value=2.8e-21 Score=162.00 Aligned_cols=156 Identities=20% Similarity=0.264 Sum_probs=94.5
Q ss_pred CEEeCCCCcCccccCcCccCCCCccEEeCCCCccccCCCccccCCCCCCEEEccCCcCCcCCChhhhcCCCCCEEEeecc
Q 019924 42 KVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSN 121 (334)
Q Consensus 42 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N 121 (334)
+.++++++.++ .+|..+. ++++.|++++|++++..+..|.++++|++|++++|++++..|..|..+++|++|+|++|
T Consensus 14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 45566666665 4444433 45666666666666555555666666666666666666655666666666666666666
Q ss_pred cCcccCCCCCCCCCCCCccEEEecCCccccccchhhHHhHHhhhhcCCcccccccccCCCCCCceeeEEEEEeccchhhh
Q 019924 122 RFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKME 201 (334)
Q Consensus 122 ~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 201 (334)
++++..+..+ ..+++|+.|++++|.+++..+.. +
T Consensus 91 ~l~~l~~~~f--~~l~~L~~L~L~~N~l~~~~~~~--------------------------------------------~ 124 (220)
T 2v9t_B 91 KITELPKSLF--EGLFSLQLLLLNANKINCLRVDA--------------------------------------------F 124 (220)
T ss_dssp CCCCCCTTTT--TTCTTCCEEECCSSCCCCCCTTT--------------------------------------------T
T ss_pred cCCccCHhHc--cCCCCCCEEECCCCCCCEeCHHH--------------------------------------------c
Confidence 6653333322 55666666666666666543321 1
Q ss_pred hhhhheeEEEccCcccccCCchhhhCcCCCCeeeccCCccCCCCC
Q 019924 202 RILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGLCG 246 (334)
Q Consensus 202 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~l~~ 246 (334)
..+++|+.|+|++|++++..+..+..+++|+.|++++|++++.|.
T Consensus 125 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~ 169 (220)
T 2v9t_B 125 QDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCH 169 (220)
T ss_dssp TTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECSGG
T ss_pred CCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCCCc
Confidence 114566777777777776666667777777777777777776654
No 77
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.86 E-value=1.2e-20 Score=178.69 Aligned_cols=177 Identities=24% Similarity=0.280 Sum_probs=125.5
Q ss_pred CcccEEEcCCCCCCCCCCCCCCCCCeEECCCC---------CCCCEEeCCCCcCccccCcCccCCCCccEEeCCCCcccc
Q 019924 7 ATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSN---------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEG 77 (334)
Q Consensus 7 ~~L~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n---------~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~ 77 (334)
.+|+.|++++|.++++++..+++|+.|++++| ++|++|++++|+|++ +|. +.. +|++|++++|++++
T Consensus 59 ~~L~~L~Ls~n~L~~lp~~l~~~L~~L~Ls~N~l~~ip~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~ 134 (571)
T 3cvr_A 59 NQFSELQLNRLNLSSLPDNLPPQITVLEITQNALISLPELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTM 134 (571)
T ss_dssp TTCSEEECCSSCCSCCCSCCCTTCSEEECCSSCCSCCCCCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSC
T ss_pred CCccEEEeCCCCCCccCHhHcCCCCEEECcCCCCcccccccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCCCcCCC
Confidence 38999999999999977656677877777776 467777777777775 555 544 77777777777774
Q ss_pred CCCccccCCCCCCEEEccCCcCCcCCChhhhcCCCCCEEEeecccCcccCCCCCCCCCCCCccEEEecCCccccccchhh
Q 019924 78 PLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGY 157 (334)
Q Consensus 78 ~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 157 (334)
+|. .+++|++|++++|.+++ +|. .+++|++|++++|++++ +|. + . ++|+.|++++|.++.... +
T Consensus 135 -lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l--~--~~L~~L~Ls~N~L~~lp~--~ 198 (571)
T 3cvr_A 135 -LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-L--P--ESLEALDVSTNLLESLPA--V 198 (571)
T ss_dssp -CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-C--C--TTCCEEECCSSCCSSCCC--C
T ss_pred -CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-h--h--CCCCEEECcCCCCCchhh--H
Confidence 554 56777777777777776 444 46677777777777765 444 3 3 677777777777763321 1
Q ss_pred HHhHHhhhhcCCcccccccccCCCCCCceeeEEEEEeccchhhhhhhhheeEEEccCcccccCCchhhhCcCCCCeeecc
Q 019924 158 LDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNIS 237 (334)
Q Consensus 158 ~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls 237 (334)
.. +| ....+.|+.|+|++|+|+ .+|..+.++++|+.|+++
T Consensus 199 ~~---~L------------------------------------~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~ 238 (571)
T 3cvr_A 199 PV---RN------------------------------------HHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILE 238 (571)
T ss_dssp C-----------------------------------------------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECC
T ss_pred HH---hh------------------------------------hcccccceEEecCCCcce-ecCHHHhcCCCCCEEEee
Confidence 10 00 011344599999999998 788888889999999999
Q ss_pred CCccCC
Q 019924 238 HNNLTG 243 (334)
Q Consensus 238 ~N~l~~ 243 (334)
+|++++
T Consensus 239 ~N~l~~ 244 (571)
T 3cvr_A 239 DNPLSS 244 (571)
T ss_dssp SSSCCH
T ss_pred CCcCCC
Confidence 999985
No 78
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.86 E-value=4.2e-21 Score=185.13 Aligned_cols=219 Identities=18% Similarity=0.229 Sum_probs=125.3
Q ss_pred CCCcccEEEcCCCCCCCCCC-CCCCCCCeEECCCC---------------CCCCEEeCCCCcCccccCcCccCCCCccEE
Q 019924 5 GIATLYYLDLSNNFLTNIEY-FPPTNMTQLNFDSN---------------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSL 68 (334)
Q Consensus 5 ~l~~L~~L~Ls~n~l~~~~~-~~~~~L~~L~l~~n---------------~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 68 (334)
.++.|+.+++++|.+..... ..+++|+.|++++| .+|++++++.|.+. ..+..+..+++|+.+
T Consensus 347 ~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~-~~~~~~~~l~~L~~l 425 (635)
T 4g8a_A 347 KLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVI-TMSSNFLGLEQLEHL 425 (635)
T ss_dssp BCTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEE-EECSCCTTCTTCCEE
T ss_pred cchhhhhcccccccCCCCcccccccccccchhhccccccccccccchhhhhhhhhhhccccccc-cccccccccccccch
Confidence 34556666666665554433 34556666666655 34555666555554 233445555555555
Q ss_pred eCCCCccccCC-CccccCCCCCCEEEccCCcCCcCCChhhhcCCCCCEEEeecccCcc-cCCCCCCCCCCCCccEEEecC
Q 019924 69 NLNGNRLEGPL-PPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWG-PIGENTTIVPFPSLRIIDLSH 146 (334)
Q Consensus 69 ~L~~n~l~~~~-p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~-~~~~~~~~~~l~~L~~L~Ls~ 146 (334)
+++.|...... +..+..+.+++.++++.|.+....+..+..++.|++|++++|.+.+ ..+..+ ..+++|+.|++++
T Consensus 426 ~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~--~~l~~L~~L~Ls~ 503 (635)
T 4g8a_A 426 DFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIF--TELRNLTFLDLSQ 503 (635)
T ss_dssp ECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCC--TTCTTCCEEECTT
T ss_pred hhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhh--hhccccCEEECCC
Confidence 55555443322 2334455555555555555555555555555555555555554322 233333 4555555555555
Q ss_pred CccccccchhhHHhHHhhhhcCCcccccccccCCCCCCceeeEEEEEeccchhhhhhhhheeEEEccCcccccCCchhhh
Q 019924 147 NEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVG 226 (334)
Q Consensus 147 N~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~ 226 (334)
|++++..+.. +.++++|+.++...+ .+.+++...+..+++|++|||++|+|++..|..+.
T Consensus 504 N~L~~l~~~~-f~~l~~L~~L~Ls~N-------------------~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~ 563 (635)
T 4g8a_A 504 CQLEQLSPTA-FNSLSSLQVLNMSHN-------------------NFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQ 563 (635)
T ss_dssp SCCCEECTTT-TTTCTTCCEEECTTS-------------------CCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTT
T ss_pred CccCCcChHH-HcCCCCCCEEECCCC-------------------cCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHH
Confidence 5555443322 333333333332111 11223333344578899999999999999999999
Q ss_pred Cc-CCCCeeeccCCccCCCCC
Q 019924 227 KL-NLLKGLNISHNNLTGLCG 246 (334)
Q Consensus 227 ~l-~~L~~L~Ls~N~l~~l~~ 246 (334)
.+ ++|+.|++++|++++-|.
T Consensus 564 ~l~~~L~~L~L~~Np~~C~C~ 584 (635)
T 4g8a_A 564 HFPSSLAFLNLTQNDFACTCE 584 (635)
T ss_dssp CCCTTCCEEECTTCCBCCSGG
T ss_pred hhhCcCCEEEeeCCCCcccCC
Confidence 88 689999999999998886
No 79
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.86 E-value=3.3e-21 Score=185.91 Aligned_cols=146 Identities=21% Similarity=0.205 Sum_probs=114.7
Q ss_pred cccEEEcCCCCCCCCCCCCCCCCCeEECCCCCCCCEEeCCCCcCccccCcCccCCCCccEEeCCCCccccCCCccccCCC
Q 019924 8 TLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCH 87 (334)
Q Consensus 8 ~L~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~ 87 (334)
++++|||++|+|+++++..|.+++.| ++|+|++|+|++..|.+|.++++|++|+|++|++++..+..|.+++
T Consensus 53 ~~~~LdLs~N~i~~l~~~~f~~l~~L--------~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~ 124 (635)
T 4g8a_A 53 STKNLDLSFNPLRHLGSYSFFSFPEL--------QVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLS 124 (635)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTC--------CEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCT
T ss_pred CCCEEEeeCCCCCCCCHHHHhCCCCC--------CEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCC
Confidence 56777777777777766666666555 8899999999877778889999999999999999876677788899
Q ss_pred CCCEEEccCCcCCcCCChhhhcCCCCCEEEeecccCccc-CCCCCCCCCCCCccEEEecCCccccccchhhHHhHHhh
Q 019924 88 HLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGP-IGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAM 164 (334)
Q Consensus 88 ~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L 164 (334)
+|++|++++|++++..+..|+.+++|++|++++|++++. .+.. +..+++|++|++++|++++..+.. +..+..+
T Consensus 125 ~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~--~~~l~~L~~L~L~~N~l~~~~~~~-l~~L~~l 199 (635)
T 4g8a_A 125 SLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY--FSNLTNLEHLDLSSNKIQSIYCTD-LRVLHQM 199 (635)
T ss_dssp TCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGG--GGGCTTCCEEECCSSCCCEECGGG-GHHHHTC
T ss_pred CCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchh--hccchhhhhhcccCcccccccccc-ccchhhh
Confidence 999999999999887777788899999999999988643 3333 377888999999999988765543 5555544
No 80
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.85 E-value=3.9e-21 Score=161.18 Aligned_cols=107 Identities=21% Similarity=0.270 Sum_probs=49.7
Q ss_pred CEEeCCCCcCccccC-cCccCCCCccEEeCCCCccccCCCccccCCCCCCEEEccCCcCCcCCChhhhcCCCCCEEEeec
Q 019924 42 KVLDMRMNNFNGKIP-RKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRS 120 (334)
Q Consensus 42 ~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~ 120 (334)
++|++++|++++..| ..|..+++|++|++++|++++..+..|.++++|++|++++|++++..+..|..+++|++|++++
T Consensus 35 ~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 114 (220)
T 2v70_A 35 AELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRS 114 (220)
T ss_dssp SEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTT
T ss_pred CEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCC
Confidence 344455555543322 2344555555555555555544444455555555555555555544444444455555555555
Q ss_pred ccCcccCCCCCCCCCCCCccEEEecCCccc
Q 019924 121 NRFWGPIGENTTIVPFPSLRIIDLSHNEFT 150 (334)
Q Consensus 121 N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~ 150 (334)
|++++..+..+ ..+++|+.|++++|+++
T Consensus 115 N~l~~~~~~~~--~~l~~L~~L~L~~N~l~ 142 (220)
T 2v70_A 115 NRITCVGNDSF--IGLSSVRLLSLYDNQIT 142 (220)
T ss_dssp SCCCCBCTTSS--TTCTTCSEEECTTSCCC
T ss_pred CcCCeECHhHc--CCCccCCEEECCCCcCC
Confidence 55444333322 33444444444444433
No 81
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.85 E-value=1.5e-20 Score=180.02 Aligned_cols=40 Identities=18% Similarity=0.316 Sum_probs=36.2
Q ss_pred hhhheeEEEccCcccccCCchhhhCcCCCCeeeccCCccCC
Q 019924 203 ILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTG 243 (334)
Q Consensus 203 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 243 (334)
.+++|+.|+|++|+|+ .+|..+.++++|+.|++++|++++
T Consensus 259 ~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~ 298 (622)
T 3g06_A 259 LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSE 298 (622)
T ss_dssp CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCH
T ss_pred ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCC
Confidence 4678999999999998 788899999999999999999985
No 82
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.85 E-value=2.2e-20 Score=157.61 Aligned_cols=154 Identities=20% Similarity=0.207 Sum_probs=96.9
Q ss_pred CEEeCCCCcCccccCcCccCCCCccEEeCCCCccccCCCccccCCCCCCEEEccCCcCCcCCChhhhcCCCCCEEEeecc
Q 019924 42 KVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSN 121 (334)
Q Consensus 42 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N 121 (334)
+.++.+++.++ .+|..+. ++|++|++++|++++..|..|.++++|++|++++|+++...+..|..+++|++|++++|
T Consensus 22 ~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N 98 (229)
T 3e6j_A 22 TTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN 98 (229)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC
Confidence 45666666665 4444433 56666777777666666666666667777777777666655555666667777777777
Q ss_pred cCcccCCCCCCCCCCCCccEEEecCCccccccchhhHHhHHhhhhcCCcccccccccCCCCCCceeeEEEEEeccchhhh
Q 019924 122 RFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKME 201 (334)
Q Consensus 122 ~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 201 (334)
++++..+..+ ..+++|+.|++++|+++.. |..+
T Consensus 99 ~l~~l~~~~~--~~l~~L~~L~Ls~N~l~~l-p~~~-------------------------------------------- 131 (229)
T 3e6j_A 99 QLTVLPSAVF--DRLVHLKELFMCCNKLTEL-PRGI-------------------------------------------- 131 (229)
T ss_dssp CCCCCCTTTT--TTCTTCCEEECCSSCCCSC-CTTG--------------------------------------------
T ss_pred cCCccChhHh--CcchhhCeEeccCCccccc-Cccc--------------------------------------------
Confidence 6654444433 5666777777777766632 2210
Q ss_pred hhhhheeEEEccCcccccCCchhhhCcCCCCeeeccCCccCCCC
Q 019924 202 RILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGLC 245 (334)
Q Consensus 202 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~l~ 245 (334)
..+++|+.|+|++|++++..+..+..+++|+.|++++|++++.|
T Consensus 132 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 175 (229)
T 3e6j_A 132 ERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCEC 175 (229)
T ss_dssp GGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTB
T ss_pred ccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCc
Confidence 11456677777777777555566777777777777777777655
No 83
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.85 E-value=2.2e-20 Score=173.29 Aligned_cols=129 Identities=27% Similarity=0.331 Sum_probs=92.4
Q ss_pred CcccEEEcCCCCCCCCCCCCCCCCCeEECCCC---------CCCCEEeCCCCcCccccCcCccCCCCccEEeCCCCcccc
Q 019924 7 ATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSN---------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEG 77 (334)
Q Consensus 7 ~~L~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n---------~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~ 77 (334)
++|++|++++|.+++++ ..+++|+.|++++| ++|++|++++|++++ +| .|+.+++|++|++++|++++
T Consensus 91 ~~L~~L~l~~n~l~~lp-~~~~~L~~L~l~~n~l~~l~~~~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~ 167 (454)
T 1jl5_A 91 PHLESLVASCNSLTELP-ELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK 167 (454)
T ss_dssp TTCSEEECCSSCCSSCC-CCCTTCCEEECCSSCCSCCCSCCTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC
T ss_pred CCCCEEEccCCcCCccc-cccCCCcEEECCCCccCcccCCCCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc
Confidence 56788888888888744 44578888888888 478889999998885 66 58888889999998888884
Q ss_pred CCCccccCCCCCCEEEccCCcCCcCCChhhhcCCCCCEEEeecccCcccCCCCCCCCCCCCccEEEecCCccc
Q 019924 78 PLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFT 150 (334)
Q Consensus 78 ~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~ 150 (334)
+|..+ .+|++|++++|++++ +| .++.+++|++|++++|++++ ++.. .++|+.|++++|.++
T Consensus 168 -lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~-----~~~L~~L~l~~n~l~ 228 (454)
T 1jl5_A 168 -LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDL-----PLSLESIVAGNNILE 228 (454)
T ss_dssp -CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCC-----CTTCCEEECCSSCCS
T ss_pred -cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCC-----cCcccEEECcCCcCC
Confidence 55433 478888888888877 45 47777777777777777754 2221 134555555555554
No 84
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.85 E-value=1.6e-20 Score=156.06 Aligned_cols=135 Identities=25% Similarity=0.207 Sum_probs=93.6
Q ss_pred CcccEEEcCCCCCCCCCCCCCCCCCeEECCCCCCCCEEeCCCCcCccccCcCccCCCCccEEeCCCCccccCCCccccCC
Q 019924 7 ATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNC 86 (334)
Q Consensus 7 ~~L~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l 86 (334)
++|++|++++|.++++++..+..+..| ++|++++|++++..+..|..+++|++|++++|++++..+..+.++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L--------~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 99 (208)
T 2o6s_A 28 AQTTYLDLETNSLKSLPNGVFDELTSL--------TQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKL 99 (208)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTC--------SEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred CCCcEEEcCCCccCcCChhhhcccccC--------cEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCc
Confidence 467777777777776665555555444 777777777776555566777777777777777775555556777
Q ss_pred CCCCEEEccCCcCCcCCChhhhcCCCCCEEEeecccCcccCCCCCCCCCCCCccEEEecCCcccc
Q 019924 87 HHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTG 151 (334)
Q Consensus 87 ~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~ 151 (334)
++|++|++++|++++..+..+..+++|++|++++|++++..+..+ ..+++|+.|++++|.+.+
T Consensus 100 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~--~~l~~L~~L~l~~N~~~~ 162 (208)
T 2o6s_A 100 TQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVF--DRLTSLQYIWLHDNPWDC 162 (208)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTT--TTCTTCCEEECCSCCBCC
T ss_pred cCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHh--ccCCCccEEEecCCCeec
Confidence 777777777777777666666777777777777777765444333 667777777777776654
No 85
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.85 E-value=9.4e-21 Score=175.74 Aligned_cols=219 Identities=22% Similarity=0.273 Sum_probs=125.8
Q ss_pred CcccEEEcCCCCCCCCCC-CCCCCCCeEECCCC---------CCCCEEeCCCCcCccccCcCccCCCCccEEeCCCCccc
Q 019924 7 ATLYYLDLSNNFLTNIEY-FPPTNMTQLNFDSN---------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLE 76 (334)
Q Consensus 7 ~~L~~L~Ls~n~l~~~~~-~~~~~L~~L~l~~n---------~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~ 76 (334)
++|++|++++|.+++++. ..+++|++|++++| .+|++|++++|++++ +| .++.+++|++|++++|+++
T Consensus 131 ~~L~~L~L~~n~l~~lp~~~~l~~L~~L~l~~N~l~~lp~~~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~ 208 (454)
T 1jl5_A 131 PLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLK 208 (454)
T ss_dssp TTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCS
T ss_pred CCCCEEECcCCCCCCCcccCCCCCCCEEECCCCcCcccCCCcccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCC
Confidence 466667777776666443 45666777777776 467777777777774 44 4777777777777777776
Q ss_pred cCCCccccCCCCCCEEEccCCcCCcCCChhhhcCCCCCEEEeecccCcccCCCCCCCCCCCCccEEEecCCccccccchh
Q 019924 77 GPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTG 156 (334)
Q Consensus 77 ~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 156 (334)
+ +|... ++|++|++++|.++. +|. ++.+++|++|++++|++++ ++. .+++|+.|++++|.+++... .
T Consensus 209 ~-l~~~~---~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~l~~N~l~~-l~~-----~~~~L~~L~l~~N~l~~l~~-~ 275 (454)
T 1jl5_A 209 K-LPDLP---LSLESIVAGNNILEE-LPE-LQNLPFLTTIYADNNLLKT-LPD-----LPPSLEALNVRDNYLTDLPE-L 275 (454)
T ss_dssp S-CCCCC---TTCCEEECCSSCCSS-CCC-CTTCTTCCEEECCSSCCSS-CCS-----CCTTCCEEECCSSCCSCCCC-C
T ss_pred c-CCCCc---CcccEEECcCCcCCc-ccc-cCCCCCCCEEECCCCcCCc-ccc-----cccccCEEECCCCcccccCc-c
Confidence 4 34322 467777777777764 453 6677777777777777754 222 12455555555555554211 1
Q ss_pred hHHhHHhhhhcCC-----------------cccccccccCCCCCCceeeEEEEEeccchhhhhhhhheeEEEccCccccc
Q 019924 157 YLDNFKAMMHGNN-----------------ISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQG 219 (334)
Q Consensus 157 ~~~~l~~L~~~~~-----------------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~ 219 (334)
..+++.+...++ ..+.+..+.... ..+..+.+..+.+.. ....+++|+.|++++|+++
T Consensus 276 -~~~L~~L~ls~N~l~~l~~~~~~L~~L~l~~N~l~~i~~~~--~~L~~L~Ls~N~l~~-lp~~~~~L~~L~L~~N~l~- 350 (454)
T 1jl5_A 276 -PQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLP--PSLEELNVSNNKLIE-LPALPPRLERLIASFNHLA- 350 (454)
T ss_dssp -CTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEECCCC--TTCCEEECCSSCCSC-CCCCCTTCCEEECCSSCCS-
T ss_pred -cCcCCEEECcCCccCcccCcCCcCCEEECcCCcCCcccCCc--CcCCEEECCCCcccc-ccccCCcCCEEECCCCccc-
Confidence 122222211111 011111111110 122223322222221 2223578999999999998
Q ss_pred CCchhhhCcCCCCeeeccCCccCCCCCCC
Q 019924 220 GIPEVVGKLNLLKGLNISHNNLTGLCGFP 248 (334)
Q Consensus 220 ~~p~~l~~l~~L~~L~Ls~N~l~~l~~~~ 248 (334)
.+|. .+++|+.|++++|+++++...|
T Consensus 351 ~lp~---~l~~L~~L~L~~N~l~~l~~ip 376 (454)
T 1jl5_A 351 EVPE---LPQNLKQLHVEYNPLREFPDIP 376 (454)
T ss_dssp CCCC---CCTTCCEEECCSSCCSSCCCCC
T ss_pred cccc---hhhhccEEECCCCCCCcCCCCh
Confidence 5666 4788999999999998865443
No 86
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.84 E-value=4.9e-20 Score=154.43 Aligned_cols=147 Identities=20% Similarity=0.191 Sum_probs=129.5
Q ss_pred cEEEcCCCCCCCCCCCCCCCCCeEECCCC--------------CCCCEEeCCCCcCccccCcCccCCCCccEEeCCCCcc
Q 019924 10 YYLDLSNNFLTNIEYFPPTNMTQLNFDSN--------------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRL 75 (334)
Q Consensus 10 ~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n--------------~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l 75 (334)
+.+++++|.++.++......++.|++++| ++|++|++++|++++..+..|..+++|++|++++|++
T Consensus 14 ~~l~~s~n~l~~iP~~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l 93 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRL 93 (220)
T ss_dssp TEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred CEeEeCCCCcccCccCCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCcc
Confidence 57888888888776655666778888877 6789999999999988888999999999999999999
Q ss_pred ccCCCccccCCCCCCEEEccCCcCCcCCChhhhcCCCCCEEEeecccCcccCCCCCCCCCCCCccEEEecCCccccccch
Q 019924 76 EGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLT 155 (334)
Q Consensus 76 ~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 155 (334)
++..+..|.++++|++|++++|++++..|..|..+++|++|++++|++++..+..+ ..+++|+.|++++|.+....+.
T Consensus 94 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~L~~N~l~c~c~l 171 (220)
T 2v70_A 94 ENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAF--DTLHSLSTLNLLANPFNCNCYL 171 (220)
T ss_dssp CCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTT--TTCTTCCEEECCSCCEECSGGG
T ss_pred CccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHh--cCCCCCCEEEecCcCCcCCCch
Confidence 98888889999999999999999999889999999999999999999988777766 8899999999999999876554
Q ss_pred hhH
Q 019924 156 GYL 158 (334)
Q Consensus 156 ~~~ 158 (334)
.++
T Consensus 172 ~~l 174 (220)
T 2v70_A 172 AWL 174 (220)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
No 87
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.84 E-value=1e-20 Score=165.42 Aligned_cols=171 Identities=22% Similarity=0.265 Sum_probs=139.5
Q ss_pred CCCcccEEEcCCCCCCCCCCCCCCCCCeEECCCCCCCCEEeCCCCcCccccCcCccCCCCccEEeCCCCccccCCCcccc
Q 019924 5 GIATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLV 84 (334)
Q Consensus 5 ~l~~L~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~ 84 (334)
.+++|+.|++++|.+++++. +..+ ++|++|++++|++++..+ +..+++|++|++++|++++ +| .+.
T Consensus 44 ~l~~L~~L~l~~~~i~~~~~--~~~l--------~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~-~l~ 109 (291)
T 1h6t_A 44 ELNSIDQIIANNSDIKSVQG--IQYL--------PNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LS-SLK 109 (291)
T ss_dssp HHHTCCEEECTTSCCCCCTT--GGGC--------TTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GG-GGT
T ss_pred hcCcccEEEccCCCcccChh--HhcC--------CCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-Ch-hhc
Confidence 45788999999998876632 2223 445899999999996544 8999999999999999984 34 489
Q ss_pred CCCCCCEEEccCCcCCcCCChhhhcCCCCCEEEeecccCcccCCCCCCCCCCCCccEEEecCCccccccchhhHHhHHhh
Q 019924 85 NCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAM 164 (334)
Q Consensus 85 ~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L 164 (334)
.+++|++|++++|++++. ..+..+++|++|++++|++++. . .+..+++|+.|++++|.+++..+ +
T Consensus 110 ~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~--~l~~l~~L~~L~L~~N~l~~~~~---l------ 174 (291)
T 1h6t_A 110 DLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--T--VLSRLTKLDTLSLEDNQISDIVP---L------ 174 (291)
T ss_dssp TCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--G--GGGGCTTCSEEECCSSCCCCCGG---G------
T ss_pred cCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--h--hhccCCCCCEEEccCCccccchh---h------
Confidence 999999999999999884 4688999999999999999754 2 34789999999999999987543 1
Q ss_pred hhcCCcccccccccCCCCCCceeeEEEEEeccchhhhhhhhheeEEEccCcccccCCchhhhCcCCCCeeeccCCccCC
Q 019924 165 MHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTG 243 (334)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 243 (334)
..+++|+.|++++|.+++ +| .+..+++|+.|++++|++++
T Consensus 175 -------------------------------------~~l~~L~~L~L~~N~i~~-l~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 175 -------------------------------------AGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp -------------------------------------TTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEEEEEEC
T ss_pred -------------------------------------cCCCccCEEECCCCcCCC-Ch-hhccCCCCCEEECcCCcccC
Confidence 126789999999999984 55 48999999999999999875
No 88
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.84 E-value=4.7e-21 Score=162.73 Aligned_cols=177 Identities=18% Similarity=0.175 Sum_probs=145.0
Q ss_pred cCCCcccEEEcCCCC-CCCCCCCCCCCCCeEECCCCCCCCEEeCCC-CcCccccCcCccCCCCccEEeCCCCccccCCCc
Q 019924 4 LGIATLYYLDLSNNF-LTNIEYFPPTNMTQLNFDSNLTHKVLDMRM-NNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPP 81 (334)
Q Consensus 4 ~~l~~L~~L~Ls~n~-l~~~~~~~~~~L~~L~l~~n~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~ 81 (334)
.++++|++|++++|. ++++++..+.++..| ++|++++ |++++..+..|.++++|++|++++|++++ +|.
T Consensus 52 ~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L--------~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~-lp~ 122 (239)
T 2xwt_C 52 SNLPNISRIYVSIDVTLQQLESHSFYNLSKV--------THIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKM-FPD 122 (239)
T ss_dssp TTCTTCCEEEEECCSSCCEECTTTEESCTTC--------CEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCS-CCC
T ss_pred cCCCCCcEEeCCCCCCcceeCHhHcCCCcCC--------cEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcc-ccc
Confidence 368999999999997 988877666666555 9999998 99997777899999999999999999995 676
Q ss_pred cccCCCCCC---EEEccCC-cCCcCCChhhhcCCCCC-EEEeecccCcccCCCCCCCCCCCCccEEEecCCc-cccccch
Q 019924 82 SLVNCHHLE---VLNVGNN-QINDNFPNWLEILPELQ-VLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNE-FTGVLLT 155 (334)
Q Consensus 82 ~l~~l~~L~---~L~Ls~N-~l~~~~~~~l~~l~~L~-~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~ 155 (334)
+..+++|+ +|++++| .+++..+..|..+++|+ +|++++|+++ .++... +.. ++|+.|++++|+ +++..+.
T Consensus 123 -~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~-~~~-~~L~~L~L~~n~~l~~i~~~ 198 (239)
T 2xwt_C 123 -LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYA-FNG-TKLDAVYLNKNKYLTVIDKD 198 (239)
T ss_dssp -CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTT-TTT-CEEEEEECTTCTTCCEECTT
T ss_pred -cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhh-cCC-CCCCEEEcCCCCCcccCCHH
Confidence 88899998 9999999 99997778899999999 9999999997 455433 233 899999999995 8754332
Q ss_pred hhHHhHHhhhhcCCcccccccccCCCCCCceeeEEEEEeccchhhhhhh-hheeEEEccCcccccCCchhhhCcCCCCee
Q 019924 156 GYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERIL-TIFMTIDLSSNKFQGGIPEVVGKLNLLKGL 234 (334)
Q Consensus 156 ~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l-~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L 234 (334)
. + ..+ ++|+.|++++|+++ .+|.. .+++|+.|
T Consensus 199 ~-~-------------------------------------------~~l~~~L~~L~l~~N~l~-~l~~~--~~~~L~~L 231 (239)
T 2xwt_C 199 A-F-------------------------------------------GGVYSGPSLLDVSQTSVT-ALPSK--GLEHLKEL 231 (239)
T ss_dssp T-T-------------------------------------------TTCSBCCSEEECTTCCCC-CCCCT--TCTTCSEE
T ss_pred H-h-------------------------------------------hccccCCcEEECCCCccc-cCChh--HhccCcee
Confidence 2 1 125 67999999999998 45544 67889999
Q ss_pred eccCCc
Q 019924 235 NISHNN 240 (334)
Q Consensus 235 ~Ls~N~ 240 (334)
+++++.
T Consensus 232 ~l~~~~ 237 (239)
T 2xwt_C 232 IARNTW 237 (239)
T ss_dssp ECTTC-
T ss_pred eccCcc
Confidence 998763
No 89
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.84 E-value=6e-21 Score=168.27 Aligned_cols=171 Identities=18% Similarity=0.201 Sum_probs=135.1
Q ss_pred CCCCEEeCCCCcCccccCcCccCCCCccEEeCCCCccccCCCccccCCCCCCEEEccCCcCCcCCChhhhcCCCCCEEEe
Q 019924 39 LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLIL 118 (334)
Q Consensus 39 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L 118 (334)
++|++|++++|.++. +| .+..+++|++|++++|++++. +. +.++++|++|++++|++++. + .+..+++|++|++
T Consensus 41 ~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~-~~-~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~l 114 (308)
T 1h6u_A 41 DGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDL-AP-LKNLTKITELELSGNPLKNV-S-AIAGLQSIKTLDL 114 (308)
T ss_dssp HTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCCSCCEEECCSCCCSCC-G-GGTTCTTCCEEEC
T ss_pred CCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCC-hh-HccCCCCCEEEccCCcCCCc-h-hhcCCCCCCEEEC
Confidence 455889999999984 45 688999999999999999954 44 99999999999999999883 3 6889999999999
Q ss_pred ecccCcccCCCCCCCCCCCCccEEEecCCccccccchhhHHhHHhhhhcCCcccccccccCCCCCCceeeEEEEEeccch
Q 019924 119 RSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDI 198 (334)
Q Consensus 119 ~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 198 (334)
++|++++..+ +..+++|+.|++++|.+++..+ +..+++|+.++...+.+ ..++.
T Consensus 115 ~~n~l~~~~~----l~~l~~L~~L~l~~n~l~~~~~---l~~l~~L~~L~l~~n~l-------------------~~~~~ 168 (308)
T 1h6u_A 115 TSTQITDVTP----LAGLSNLQVLYLDLNQITNISP---LAGLTNLQYLSIGNAQV-------------------SDLTP 168 (308)
T ss_dssp TTSCCCCCGG----GTTCTTCCEEECCSSCCCCCGG---GGGCTTCCEEECCSSCC-------------------CCCGG
T ss_pred CCCCCCCchh----hcCCCCCCEEECCCCccCcCcc---ccCCCCccEEEccCCcC-------------------CCChh
Confidence 9999976432 4889999999999999987654 44555554444422211 11222
Q ss_pred hhhhhhhheeEEEccCcccccCCchhhhCcCCCCeeeccCCccCCCC
Q 019924 199 KMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGLC 245 (334)
Q Consensus 199 ~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~l~ 245 (334)
+..+++|+.|++++|++++..+ +..+++|+.|++++|+++++.
T Consensus 169 --l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~ 211 (308)
T 1h6u_A 169 --LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVS 211 (308)
T ss_dssp --GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCG
T ss_pred --hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCccc
Confidence 4457899999999999985433 889999999999999998765
No 90
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.83 E-value=9.3e-21 Score=167.25 Aligned_cols=197 Identities=15% Similarity=0.092 Sum_probs=142.7
Q ss_pred CCCeEECCCC----------------CCCCEEeCCCCcCccccCcCc--cCCCCccEEeCCCCccccCCC----ccccCC
Q 019924 29 NMTQLNFDSN----------------LTHKVLDMRMNNFNGKIPRKF--VKSCNLTSLNLNGNRLEGPLP----PSLVNC 86 (334)
Q Consensus 29 ~L~~L~l~~n----------------~~L~~L~Ls~N~l~~~~p~~~--~~l~~L~~L~L~~n~l~~~~p----~~l~~l 86 (334)
.++.+.+.++ ++|++|++++|++++..|..+ ..+++|++|++++|++++..+ ..+..+
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~ 144 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK 144 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence 3566777665 569999999999999999888 899999999999999997555 345578
Q ss_pred CCCCEEEccCCcCCcCCChhhhcCCCCCEEEeecccCccc--CCCCCCCCCCCCccEEEecCCccccccc--hhhHHhHH
Q 019924 87 HHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGP--IGENTTIVPFPSLRIIDLSHNEFTGVLL--TGYLDNFK 162 (334)
Q Consensus 87 ~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~--~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--~~~~~~l~ 162 (334)
++|++|++++|++++..+..++.+++|++|++++|++.+. ++....+..+++|++|++++|+++.... ...+..++
T Consensus 145 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~ 224 (310)
T 4glp_A 145 PGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGV 224 (310)
T ss_dssp SCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTC
T ss_pred cCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCC
Confidence 9999999999999998888999999999999999997653 2222223678999999999999974322 11234455
Q ss_pred hhhhcCCcccccccccCCCCCCceeeEEEEEeccchhhhhhhhheeEEEccCcccccCCchhhhCcCCCCeeeccCCccC
Q 019924 163 AMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLT 242 (334)
Q Consensus 163 ~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 242 (334)
+|+.++...+.+....+... .....+++|++|+|++|+++ .+|..+. ++|+.|++++|+++
T Consensus 225 ~L~~L~Ls~N~l~~~~p~~~----------------~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~ 285 (310)
T 4glp_A 225 QPHSLDLSHNSLRATVNPSA----------------PRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLN 285 (310)
T ss_dssp CCSSEECTTSCCCCCCCSCC----------------SSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCC
T ss_pred CCCEEECCCCCCCccchhhH----------------HhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCC
Confidence 55555443332222100000 00001367888888888888 6676664 78888888888887
Q ss_pred CC
Q 019924 243 GL 244 (334)
Q Consensus 243 ~l 244 (334)
++
T Consensus 286 ~~ 287 (310)
T 4glp_A 286 RA 287 (310)
T ss_dssp SC
T ss_pred CC
Confidence 65
No 91
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.83 E-value=2.6e-19 Score=149.96 Aligned_cols=141 Identities=22% Similarity=0.267 Sum_probs=114.2
Q ss_pred cEEEcCCCCCCCCCCCCCCCCCeEECCCC-------------CCCCEEeCCCCcCccccCcCccCCCCccEEeCCCCccc
Q 019924 10 YYLDLSNNFLTNIEYFPPTNMTQLNFDSN-------------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLE 76 (334)
Q Consensus 10 ~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n-------------~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~ 76 (334)
+.++++++.++.++..-.++++.|++++| ++|++|+|++|++++..|..|.++++|++|+|++|+++
T Consensus 14 ~~v~c~~~~l~~iP~~l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~ 93 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT 93 (220)
T ss_dssp TEEECTTSCCSSCCSSCCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCC
T ss_pred CEEEcCCCCcCcCCCccCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCC
Confidence 34566666666555444455555555555 45699999999999888999999999999999999999
Q ss_pred cCCCccccCCCCCCEEEccCCcCCcCCChhhhcCCCCCEEEeecccCcccCCCCCCCCCCCCccEEEecCCccccc
Q 019924 77 GPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGV 152 (334)
Q Consensus 77 ~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 152 (334)
...+..|.++++|++|++++|++++..|..|..+++|++|++++|++++..+..+ ..+++|+.|++++|.+...
T Consensus 94 ~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~L~~N~~~c~ 167 (220)
T 2v9t_B 94 ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTF--SPLRAIQTMHLAQNPFICD 167 (220)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTT--TTCTTCCEEECCSSCEECS
T ss_pred ccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHH--hCCCCCCEEEeCCCCcCCC
Confidence 6666678889999999999999999888899999999999999999987666545 7889999999999998754
No 92
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.83 E-value=9.7e-22 Score=178.85 Aligned_cols=219 Identities=16% Similarity=0.134 Sum_probs=156.0
Q ss_pred CCCcccEEEcCCCCCCCCCC-------CCCCCCCeEECCCC-----------------------CCCCEEeCCCCcCcc-
Q 019924 5 GIATLYYLDLSNNFLTNIEY-------FPPTNMTQLNFDSN-----------------------LTHKVLDMRMNNFNG- 53 (334)
Q Consensus 5 ~l~~L~~L~Ls~n~l~~~~~-------~~~~~L~~L~l~~n-----------------------~~L~~L~Ls~N~l~~- 53 (334)
.+++|++|++++|.++...+ ..+++|+.|++++| ++|++|+|++|.+++
T Consensus 30 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~ 109 (386)
T 2ca6_A 30 EDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPT 109 (386)
T ss_dssp HCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTT
T ss_pred cCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHH
Confidence 46889999999999886532 46788999988875 678999999999986
Q ss_pred ---ccCcCccCCCCccEEeCCCCccccCCCcc----ccCC---------CCCCEEEccCCcCC-cCCC---hhhhcCCCC
Q 019924 54 ---KIPRKFVKSCNLTSLNLNGNRLEGPLPPS----LVNC---------HHLEVLNVGNNQIN-DNFP---NWLEILPEL 113 (334)
Q Consensus 54 ---~~p~~~~~l~~L~~L~L~~n~l~~~~p~~----l~~l---------~~L~~L~Ls~N~l~-~~~~---~~l~~l~~L 113 (334)
.+|..+..+++|++|++++|.++...+.. +..+ ++|++|++++|+++ ...+ ..+..+++|
T Consensus 110 ~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L 189 (386)
T 2ca6_A 110 AQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLL 189 (386)
T ss_dssp THHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCc
Confidence 46778888899999999999987443333 3333 89999999999987 3344 356688899
Q ss_pred CEEEeecccCcc-----cCCCCCCCCCCCCccEEEecCCcccc----ccchhhHHhHHhhhhcCCcccccccccCCCCCC
Q 019924 114 QVLILRSNRFWG-----PIGENTTIVPFPSLRIIDLSHNEFTG----VLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSN 184 (334)
Q Consensus 114 ~~L~L~~N~l~~-----~~~~~~~~~~l~~L~~L~Ls~N~l~~----~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~ 184 (334)
++|++++|+++. ..+..+ ..+++|+.|++++|.++. .++. .+..+++|..++...+
T Consensus 190 ~~L~L~~n~l~~~g~~~l~~~~l--~~~~~L~~L~Ls~n~l~~~g~~~l~~-~l~~~~~L~~L~L~~n------------ 254 (386)
T 2ca6_A 190 HTVKMVQNGIRPEGIEHLLLEGL--AYCQELKVLDLQDNTFTHLGSSALAI-ALKSWPNLRELGLNDC------------ 254 (386)
T ss_dssp CEEECCSSCCCHHHHHHHHHTTG--GGCTTCCEEECCSSCCHHHHHHHHHH-HGGGCTTCCEEECTTC------------
T ss_pred CEEECcCCCCCHhHHHHHHHHHh--hcCCCccEEECcCCCCCcHHHHHHHH-HHccCCCcCEEECCCC------------
Confidence 999999998862 223233 678899999999998863 2221 2333333333332111
Q ss_pred ceeeEEEEEeccc----hhhhhh--hhheeEEEccCccccc----CCchhh-hCcCCCCeeeccCCccCCCC
Q 019924 185 YYESIILTIKGID----IKMERI--LTIFMTIDLSSNKFQG----GIPEVV-GKLNLLKGLNISHNNLTGLC 245 (334)
Q Consensus 185 ~l~~~~~~~~~~~----~~~~~~--l~~L~~L~Ls~N~l~~----~~p~~l-~~l~~L~~L~Ls~N~l~~l~ 245 (334)
.+.... ...+.. +++|+.|+|++|.+++ .+|..+ .++++|+.|++++|++++..
T Consensus 255 -------~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 255 -------LLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp -------CCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred -------CCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 111111 112212 6889999999999997 478877 66899999999999998655
No 93
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.82 E-value=2.2e-19 Score=171.97 Aligned_cols=212 Identities=19% Similarity=0.215 Sum_probs=107.4
Q ss_pred cccEEEcCCCCCCCCCCCCCCCCCeEECCCC---------CCCCEEeCCCCcCccccCcCccCCCCccEEeCCCCccccC
Q 019924 8 TLYYLDLSNNFLTNIEYFPPTNMTQLNFDSN---------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGP 78 (334)
Q Consensus 8 ~L~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n---------~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ 78 (334)
+++.|++++|.++.++...+++|+.|++++| ++|++|++++|+++ .+|. .+++|++|++++|++++
T Consensus 41 ~l~~L~ls~n~L~~lp~~l~~~L~~L~L~~N~l~~lp~~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls~N~l~~- 115 (622)
T 3g06_A 41 GNAVLNVGESGLTTLPDCLPAHITTLVIPDNNLTSLPALPPELRTLEVSGNQLT-SLPV---LPPGLLELSIFSNPLTH- 115 (622)
T ss_dssp CCCEEECCSSCCSCCCSCCCTTCSEEEECSCCCSCCCCCCTTCCEEEECSCCCS-CCCC---CCTTCCEEEECSCCCCC-
T ss_pred CCcEEEecCCCcCccChhhCCCCcEEEecCCCCCCCCCcCCCCCEEEcCCCcCC-cCCC---CCCCCCEEECcCCcCCC-
Confidence 4566666666666555444456666666666 45666666666665 3333 44566666666666653
Q ss_pred CCccccCCCCCCEEEccCCcCCcCCChhhhcCCCCCEEEeecccCcccCCCCC-CC--------------CCCCCccEEE
Q 019924 79 LPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENT-TI--------------VPFPSLRIID 143 (334)
Q Consensus 79 ~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~-~~--------------~~l~~L~~L~ 143 (334)
+|. .+++|+.|++++|+++. +|.. +++|++|++++|++++. +... .+ ..+++|+.|+
T Consensus 116 l~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~l-~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~ 187 (622)
T 3g06_A 116 LPA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLASL-PALPSELCKLWAYNNQLTSLPMLPSGLQELS 187 (622)
T ss_dssp CCC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSCC-CCCCTTCCEEECCSSCCSCCCCCCTTCCEEE
T ss_pred CCC---CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCCc-CCccCCCCEEECCCCCCCCCcccCCCCcEEE
Confidence 333 34555555555555554 2321 25555555555555431 1110 00 1236667777
Q ss_pred ecCCccccccchhhHHhHHhhhhcCCcccccccccCCCCCCceeeEEEEEeccchhhhhhhhheeEEEccCcccccCCch
Q 019924 144 LSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPE 223 (334)
Q Consensus 144 Ls~N~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~ 223 (334)
+++|.+++... . ..++..| ....+.+..++.. ...+..+.+..+.+.. ....+++|+.|+|++|+|+ .+|.
T Consensus 188 Ls~N~l~~l~~-~-~~~L~~L---~L~~N~l~~l~~~--~~~L~~L~Ls~N~L~~-lp~~l~~L~~L~Ls~N~L~-~lp~ 258 (622)
T 3g06_A 188 VSDNQLASLPT-L-PSELYKL---WAYNNRLTSLPAL--PSGLKELIVSGNRLTS-LPVLPSELKELMVSGNRLT-SLPM 258 (622)
T ss_dssp CCSSCCSCCCC-C-CTTCCEE---ECCSSCCSSCCCC--CTTCCEEECCSSCCSC-CCCCCTTCCEEECCSSCCS-CCCC
T ss_pred CCCCCCCCCCC-c-cchhhEE---ECcCCcccccCCC--CCCCCEEEccCCccCc-CCCCCCcCcEEECCCCCCC-cCCc
Confidence 77777665322 1 2222222 2211122222111 1122222222222221 1134567888888888887 4554
Q ss_pred hhhCcCCCCeeeccCCccCCC
Q 019924 224 VVGKLNLLKGLNISHNNLTGL 244 (334)
Q Consensus 224 ~l~~l~~L~~L~Ls~N~l~~l 244 (334)
.+++|+.|++++|+|+.+
T Consensus 259 ---~~~~L~~L~Ls~N~L~~l 276 (622)
T 3g06_A 259 ---LPSGLLSLSVYRNQLTRL 276 (622)
T ss_dssp ---CCTTCCEEECCSSCCCSC
T ss_pred ---ccccCcEEeCCCCCCCcC
Confidence 567788888888887754
No 94
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.82 E-value=3.8e-21 Score=173.43 Aligned_cols=145 Identities=23% Similarity=0.233 Sum_probs=71.3
Q ss_pred CcccEEEcCCCCCCCCCC-------CCCC-CCCeEECCCC------------------CCCCEEeCCCCcCccccCcCc-
Q 019924 7 ATLYYLDLSNNFLTNIEY-------FPPT-NMTQLNFDSN------------------LTHKVLDMRMNNFNGKIPRKF- 59 (334)
Q Consensus 7 ~~L~~L~Ls~n~l~~~~~-------~~~~-~L~~L~l~~n------------------~~L~~L~Ls~N~l~~~~p~~~- 59 (334)
++|++||+++|.+++..+ ..++ +|++|++++| ++|++|++++|++++..+..+
T Consensus 22 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~ 101 (362)
T 3goz_A 22 HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELV 101 (362)
T ss_dssp TTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHH
T ss_pred CCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHH
Confidence 347777777777766553 2233 5656655555 245555666555554443322
Q ss_pred ---cCC-CCccEEeCCCCccccCCCccc----cC-CCCCCEEEccCCcCCcCCC----hhhhcCC-CCCEEEeecccCcc
Q 019924 60 ---VKS-CNLTSLNLNGNRLEGPLPPSL----VN-CHHLEVLNVGNNQINDNFP----NWLEILP-ELQVLILRSNRFWG 125 (334)
Q Consensus 60 ---~~l-~~L~~L~L~~n~l~~~~p~~l----~~-l~~L~~L~Ls~N~l~~~~~----~~l~~l~-~L~~L~L~~N~l~~ 125 (334)
..+ ++|++|++++|++++..+..+ .. .++|++|++++|.+++..+ ..+..++ +|++|++++|++++
T Consensus 102 ~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~ 181 (362)
T 3goz_A 102 KTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLAS 181 (362)
T ss_dssp HHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGG
T ss_pred HHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCch
Confidence 222 555556665555554433222 22 2455556666555553222 2223333 55566665555543
Q ss_pred cCCCCC--CCCCC-CCccEEEecCCcccc
Q 019924 126 PIGENT--TIVPF-PSLRIIDLSHNEFTG 151 (334)
Q Consensus 126 ~~~~~~--~~~~l-~~L~~L~Ls~N~l~~ 151 (334)
..+..+ .+..+ ++|+.|++++|.+++
T Consensus 182 ~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~ 210 (362)
T 3goz_A 182 KNCAELAKFLASIPASVTSLDLSANLLGL 210 (362)
T ss_dssp SCHHHHHHHHHTSCTTCCEEECTTSCGGG
T ss_pred hhHHHHHHHHHhCCCCCCEEECCCCCCCh
Confidence 322111 01222 355566666655554
No 95
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.81 E-value=1.1e-20 Score=168.38 Aligned_cols=183 Identities=16% Similarity=0.166 Sum_probs=108.2
Q ss_pred CCCCEEeCCCCcCccc-cCcCccCCCCccEEeCCCCccccCCCccccCCCCCCEEEccCC-cCCc-CCChhhhcCCCCCE
Q 019924 39 LTHKVLDMRMNNFNGK-IPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNN-QIND-NFPNWLEILPELQV 115 (334)
Q Consensus 39 ~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N-~l~~-~~~~~l~~l~~L~~ 115 (334)
++|++|++++|.+++. +|..+..+++|++|++++|++++..+..+..+++|++|++++| .+++ .++..+..+++|++
T Consensus 93 ~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~ 172 (336)
T 2ast_B 93 FRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDE 172 (336)
T ss_dssp BCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCE
T ss_pred CCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCE
Confidence 4557777777777654 6666777777777777777777666667777777777777777 5654 24555667777777
Q ss_pred EEeecc-cCccc-CCCCCCCCCCC-CccEEEecCC--ccccccchhhHHhHHhhhhcCCcccccccccCCCCCCceeeEE
Q 019924 116 LILRSN-RFWGP-IGENTTIVPFP-SLRIIDLSHN--EFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESII 190 (334)
Q Consensus 116 L~L~~N-~l~~~-~~~~~~~~~l~-~L~~L~Ls~N--~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~~~ 190 (334)
|++++| .+++. ++..+ ..++ +|+.|++++| .+++......+..+++|+.++......
T Consensus 173 L~l~~~~~l~~~~~~~~~--~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~---------------- 234 (336)
T 2ast_B 173 LNLSWCFDFTEKHVQVAV--AHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVM---------------- 234 (336)
T ss_dssp EECCCCTTCCHHHHHHHH--HHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTT----------------
T ss_pred EcCCCCCCcChHHHHHHH--HhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCc----------------
Confidence 777777 66532 22222 5566 7777777777 343211112234444444333311110
Q ss_pred EEEeccchhhhhhhhheeEEEccCcc-cccCCchhhhCcCCCCeeeccCCccC
Q 019924 191 LTIKGIDIKMERILTIFMTIDLSSNK-FQGGIPEVVGKLNLLKGLNISHNNLT 242 (334)
Q Consensus 191 ~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~p~~l~~l~~L~~L~Ls~N~l~ 242 (334)
+.......+..+++|+.|++++|. ++......+.++++|+.|++++| ++
T Consensus 235 --l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~ 284 (336)
T 2ast_B 235 --LKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VP 284 (336)
T ss_dssp --CCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SC
T ss_pred --CCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cC
Confidence 001111222345777788888774 33232335677778888888877 44
No 96
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.81 E-value=1.4e-19 Score=173.09 Aligned_cols=172 Identities=22% Similarity=0.262 Sum_probs=138.4
Q ss_pred CCCcccEEEcCCCCCCCCCCCCCCCCCeEECCCCCCCCEEeCCCCcCccccCcCccCCCCccEEeCCCCccccCCCcccc
Q 019924 5 GIATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLV 84 (334)
Q Consensus 5 ~l~~L~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~ 84 (334)
.+++|+.|++++|.+..++. +..+ ++|+.|+|++|++++..| +..+++|+.|+|++|++++ +| .+.
T Consensus 41 ~L~~L~~L~l~~n~i~~l~~--l~~l--------~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~-~l~ 106 (605)
T 1m9s_A 41 ELNSIDQIIANNSDIKSVQG--IQYL--------PNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-LS-SLK 106 (605)
T ss_dssp HHTTCCCCBCTTCCCCCCTT--GGGC--------TTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-CT-TST
T ss_pred cCCCCCEEECcCCCCCCChH--HccC--------CCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-Ch-hhc
Confidence 35778888888888776532 2222 455899999999986554 8899999999999999984 44 688
Q ss_pred CCCCCCEEEccCCcCCcCCChhhhcCCCCCEEEeecccCcccCCCCCCCCCCCCccEEEecCCccccccchhhHHhHHhh
Q 019924 85 NCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAM 164 (334)
Q Consensus 85 ~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L 164 (334)
.+++|++|+|++|.+.+. ..+..+++|+.|+|++|++++. . .+..+++|+.|+|++|.+.+..+ +.
T Consensus 107 ~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~--~l~~l~~L~~L~Ls~N~l~~~~~---l~----- 172 (605)
T 1m9s_A 107 DLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--T--VLSRLTKLDTLSLEDNQISDIVP---LA----- 172 (605)
T ss_dssp TCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--G--GGGSCTTCSEEECCSSCCCCCGG---GT-----
T ss_pred cCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--h--hhcccCCCCEEECcCCcCCCchh---hc-----
Confidence 999999999999999873 4588999999999999999754 2 34789999999999999987644 11
Q ss_pred hhcCCcccccccccCCCCCCceeeEEEEEeccchhhhhhhhheeEEEccCcccccCCchhhhCcCCCCeeeccCCccCCC
Q 019924 165 MHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGL 244 (334)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~l 244 (334)
.+++|+.|+|++|+|++ +| .+..+++|+.|+|++|++++.
T Consensus 173 --------------------------------------~l~~L~~L~Ls~N~i~~-l~-~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 173 --------------------------------------GLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp --------------------------------------TCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEECCSEEEECC
T ss_pred --------------------------------------cCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEccCCcCcCC
Confidence 26789999999999985 44 688999999999999998764
No 97
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.80 E-value=1.2e-19 Score=149.39 Aligned_cols=151 Identities=15% Similarity=0.169 Sum_probs=113.9
Q ss_pred CCCCEEeCCCCcCccccCcCccCCCCccEEeCCCCccccCCCccccCCCCCCEEEccCCcCCcCCChhhhcCCCCCEEEe
Q 019924 39 LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLIL 118 (334)
Q Consensus 39 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L 118 (334)
++|++|++++|.++ .+| .+..+++|++|++++|.++ .+..+..+++|++|++++|++++..+..++.+++|++|++
T Consensus 44 ~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L 119 (197)
T 4ezg_A 44 NSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDI 119 (197)
T ss_dssp HTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEEC
T ss_pred CCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEe
Confidence 45688888888887 555 5788888888888888776 2346788888888888888888766777888888888888
Q ss_pred ecccCcccCCCCCCCCCCCCccEEEecCCc-cccccchhhHHhHHhhhhcCCcccccccccCCCCCCceeeEEEEEeccc
Q 019924 119 RSNRFWGPIGENTTIVPFPSLRIIDLSHNE-FTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGID 197 (334)
Q Consensus 119 ~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 197 (334)
++|++++..+..+ ..+++|+.|++++|. ++.. + .
T Consensus 120 s~n~i~~~~~~~l--~~l~~L~~L~L~~n~~i~~~-~-~----------------------------------------- 154 (197)
T 4ezg_A 120 SHSAHDDSILTKI--NTLPKVNSIDLSYNGAITDI-M-P----------------------------------------- 154 (197)
T ss_dssp CSSBCBGGGHHHH--TTCSSCCEEECCSCTBCCCC-G-G-----------------------------------------
T ss_pred cCCccCcHhHHHH--hhCCCCCEEEccCCCCcccc-H-h-----------------------------------------
Confidence 8888876555544 678888888888887 5433 1 1
Q ss_pred hhhhhhhhheeEEEccCcccccCCchhhhCcCCCCeeeccCCccCC
Q 019924 198 IKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTG 243 (334)
Q Consensus 198 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 243 (334)
+..+++|+.|++++|.+++ ++ .+..+++|+.|++++|++.+
T Consensus 155 ---l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 155 ---LKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp ---GGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC----
T ss_pred ---hcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcccCC
Confidence 1126778899999999984 44 78889999999999998753
No 98
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.80 E-value=2.6e-20 Score=167.96 Aligned_cols=220 Identities=17% Similarity=0.176 Sum_probs=144.7
Q ss_pred EEEcCCCCCCCCCC---CCCCCCCeEECCCC-----------------C-CCCEEeCCCCcCccccCcCccCC-----CC
Q 019924 11 YLDLSNNFLTNIEY---FPPTNMTQLNFDSN-----------------L-THKVLDMRMNNFNGKIPRKFVKS-----CN 64 (334)
Q Consensus 11 ~L~Ls~n~l~~~~~---~~~~~L~~L~l~~n-----------------~-~L~~L~Ls~N~l~~~~p~~~~~l-----~~ 64 (334)
++++++|.+++..+ ...++|++|++++| + +|++|++++|++++..+..+..+ ++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 57899999998776 55566999999988 3 78999999999887767666664 88
Q ss_pred ccEEeCCCCccccCCCcc----ccCC-CCCCEEEccCCcCCcCCChhhh----c-CCCCCEEEeecccCcccCCCCC--C
Q 019924 65 LTSLNLNGNRLEGPLPPS----LVNC-HHLEVLNVGNNQINDNFPNWLE----I-LPELQVLILRSNRFWGPIGENT--T 132 (334)
Q Consensus 65 L~~L~L~~n~l~~~~p~~----l~~l-~~L~~L~Ls~N~l~~~~~~~l~----~-l~~L~~L~L~~N~l~~~~~~~~--~ 132 (334)
|++|++++|++++..+.. +..+ ++|++|++++|++++..+..+. . .++|++|++++|++++.....+ .
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~ 161 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI 161 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence 999999999988665553 3444 7899999999998876665543 3 3689999999998864322111 1
Q ss_pred CCCCC-CccEEEecCCccccccchhhHHhHH----hhhhcCCcccccccccCCCCCCceeeEEEEEeccchhhhhhhhhe
Q 019924 133 IVPFP-SLRIIDLSHNEFTGVLLTGYLDNFK----AMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIF 207 (334)
Q Consensus 133 ~~~l~-~L~~L~Ls~N~l~~~~~~~~~~~l~----~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L 207 (334)
+..++ +|+.|++++|++++..+..+...+. +|+.++...+.+... ....+........++|
T Consensus 162 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~--------------~~~~l~~~l~~~~~~L 227 (362)
T 3goz_A 162 LAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLK--------------SYAELAYIFSSIPNHV 227 (362)
T ss_dssp HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGS--------------CHHHHHHHHHHSCTTC
T ss_pred HhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChh--------------HHHHHHHHHhcCCCCc
Confidence 13344 8899999999888766544322222 232222211111100 0000111111223588
Q ss_pred eEEEccCcccccCCc----hhhhCcCCCCeeeccCCccCCC
Q 019924 208 MTIDLSSNKFQGGIP----EVVGKLNLLKGLNISHNNLTGL 244 (334)
Q Consensus 208 ~~L~Ls~N~l~~~~p----~~l~~l~~L~~L~Ls~N~l~~l 244 (334)
++|||++|.+++..+ ..+..+++|+.|++++|.++++
T Consensus 228 ~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i 268 (362)
T 3goz_A 228 VSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNM 268 (362)
T ss_dssp CEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTC
T ss_pred eEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCcccc
Confidence 999999999886554 3346678899999999986543
No 99
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.80 E-value=1e-18 Score=147.36 Aligned_cols=141 Identities=22% Similarity=0.158 Sum_probs=104.5
Q ss_pred cEEEcCCCCCCCCCCCCCCCCCeEECCCC-------------CCCCEEeCCCCcCccccCcCccCCCCccEEeCCCCccc
Q 019924 10 YYLDLSNNFLTNIEYFPPTNMTQLNFDSN-------------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLE 76 (334)
Q Consensus 10 ~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n-------------~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~ 76 (334)
+.++.+++.++.++....++|+.|++++| ++|++|+|++|+++...+..|..+++|++|++++|+++
T Consensus 22 ~~v~c~~~~l~~ip~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~ 101 (229)
T 3e6j_A 22 TTVDCRSKRHASVPAGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLT 101 (229)
T ss_dssp TEEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred CEeEccCCCcCccCCCCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCC
Confidence 44555555555554444444544444444 45588888888888666677888888999999999888
Q ss_pred cCCCccccCCCCCCEEEccCCcCCcCCChhhhcCCCCCEEEeecccCcccCCCCCCCCCCCCccEEEecCCcccccc
Q 019924 77 GPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVL 153 (334)
Q Consensus 77 ~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 153 (334)
+..+..|..+++|++|++++|+++. +|..+..+++|++|++++|++++..+..+ ..+++|+.|++++|.+....
T Consensus 102 ~l~~~~~~~l~~L~~L~Ls~N~l~~-lp~~~~~l~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~l~~N~~~c~c 175 (229)
T 3e6j_A 102 VLPSAVFDRLVHLKELFMCCNKLTE-LPRGIERLTHLTHLALDQNQLKSIPHGAF--DRLSSLTHAYLFGNPWDCEC 175 (229)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCCS-CCTTGGGCTTCSEEECCSSCCCCCCTTTT--TTCTTCCEEECTTSCBCTTB
T ss_pred ccChhHhCcchhhCeEeccCCcccc-cCcccccCCCCCEEECCCCcCCccCHHHH--hCCCCCCEEEeeCCCccCCc
Confidence 7666777888889999999998885 67778888889999999988875554444 77888889999988887543
No 100
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.80 E-value=2.2e-20 Score=160.91 Aligned_cols=171 Identities=18% Similarity=0.305 Sum_probs=133.2
Q ss_pred CCCcccEEEcCCCCCCCCCCCCCCCCCeEECCCCCCCCEEeCCCCcCccccCcCccCCCCccEEeCCCCccccCCCcccc
Q 019924 5 GIATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLV 84 (334)
Q Consensus 5 ~l~~L~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~ 84 (334)
++.+++.+++++|.++++.. +..+ ++|++|++++|+++ .+| .+..+++|++|++++|++++. +. +.
T Consensus 17 ~l~~l~~l~l~~~~i~~~~~--~~~l--------~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~-~~-l~ 82 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDLVS--QKEL--------SGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDL-SP-LK 82 (263)
T ss_dssp HHHHHHHHHHTCSCTTSEEC--HHHH--------TTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCC-GG-GT
T ss_pred HHHHHHHHHhcCCCcccccc--hhhc--------CcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCC-hh-hc
Confidence 45667778888888876542 2223 34488899999988 455 688899999999999999854 43 88
Q ss_pred CCCCCCEEEccCCcCCcCCChhhhcCCCCCEEEeecccCcccCCCCCCCCCCCCccEEEecCCccccccchhhHHhHHhh
Q 019924 85 NCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAM 164 (334)
Q Consensus 85 ~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L 164 (334)
++++|++|++++|++++ +|.. .. ++|++|++++|++++. + . +..+++|+.|++++|++++... +
T Consensus 83 ~l~~L~~L~L~~N~l~~-l~~~-~~-~~L~~L~L~~N~l~~~-~-~--l~~l~~L~~L~Ls~N~i~~~~~---l------ 146 (263)
T 1xeu_A 83 DLTKLEELSVNRNRLKN-LNGI-PS-ACLSRLFLDNNELRDT-D-S--LIHLKNLEILSIRNNKLKSIVM---L------ 146 (263)
T ss_dssp TCSSCCEEECCSSCCSC-CTTC-CC-SSCCEEECCSSCCSBS-G-G--GTTCTTCCEEECTTSCCCBCGG---G------
T ss_pred cCCCCCEEECCCCccCC-cCcc-cc-CcccEEEccCCccCCC-h-h--hcCcccccEEECCCCcCCCChH---H------
Confidence 99999999999999988 4433 23 8899999999998753 2 2 4789999999999999886421 1
Q ss_pred hhcCCcccccccccCCCCCCceeeEEEEEeccchhhhhhhhheeEEEccCcccccCCchhhhCcCCCCeeeccCCccCCC
Q 019924 165 MHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGL 244 (334)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~l 244 (334)
..+++|+.|++++|++++. ..+..+++|+.|++++|++++.
T Consensus 147 -------------------------------------~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 147 -------------------------------------GFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp -------------------------------------GGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred -------------------------------------ccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence 1267789999999999865 6788999999999999998754
No 101
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.80 E-value=1.1e-18 Score=142.96 Aligned_cols=133 Identities=22% Similarity=0.217 Sum_probs=115.0
Q ss_pred cEEEcCCCCCCCCCCCCCCCCCeEECCCCCCCCEEeCCCCcCccccCc-CccCCCCccEEeCCCCccccCCCccccCCCC
Q 019924 10 YYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPR-KFVKSCNLTSLNLNGNRLEGPLPPSLVNCHH 88 (334)
Q Consensus 10 ~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n~~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~ 88 (334)
+++++++|.++.++..... ++++|++++|++++..+. .|..+++|++|++++|++++..|..|.++++
T Consensus 11 ~~l~~s~~~l~~ip~~~~~-----------~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 79 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIPL-----------HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASH 79 (192)
T ss_dssp TEEECTTSCCSSCCSCCCT-----------TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTT
T ss_pred CEEEcCCCCcCcCccCCCC-----------CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCccc
Confidence 6899999999877653333 237889999999866654 4899999999999999999888999999999
Q ss_pred CCEEEccCCcCCcCCChhhhcCCCCCEEEeecccCcccCCCCCCCCCCCCccEEEecCCccccccch
Q 019924 89 LEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLT 155 (334)
Q Consensus 89 L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 155 (334)
|++|++++|++++..+..|..+++|++|++++|++++..+..+ ..+++|+.|++++|.+.+..+.
T Consensus 80 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~L~~N~l~c~c~l 144 (192)
T 1w8a_A 80 IQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSF--EHLNSLTSLNLASNPFNCNCHL 144 (192)
T ss_dssp CCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSS--TTCTTCCEEECTTCCBCCSGGG
T ss_pred CCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHh--hcCCCCCEEEeCCCCccCcCcc
Confidence 9999999999999888889999999999999999988878766 8899999999999999876543
No 102
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.79 E-value=2.5e-19 Score=147.55 Aligned_cols=140 Identities=17% Similarity=0.213 Sum_probs=96.5
Q ss_pred CCCcccEEEcCCCCCCCCCC-CCCCCCCeEECCCC-----------CCCCEEeCCCCcCccccCcCccCCCCccEEeCCC
Q 019924 5 GIATLYYLDLSNNFLTNIEY-FPPTNMTQLNFDSN-----------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNG 72 (334)
Q Consensus 5 ~l~~L~~L~Ls~n~l~~~~~-~~~~~L~~L~l~~n-----------~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~ 72 (334)
.+++|++|++++|.++.++. ..+++|+.|++++| ++|++|++++|++++..+..+..+++|++|++++
T Consensus 42 ~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~ 121 (197)
T 4ezg_A 42 QMNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISH 121 (197)
T ss_dssp HHHTCCEEEEESSCCSCCTTGGGCTTCSEEEEESCCCSCCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCS
T ss_pred hcCCccEEeccCCCccChHHHhcCCCCCEEEccCCCCCcchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecC
Confidence 46789999999999987654 55677777777766 5677777777777766666777777777777777
Q ss_pred CccccCCCccccCCCCCCEEEccCCc-CCcCCChhhhcCCCCCEEEeecccCcccCCCCCCCCCCCCccEEEecCCccc
Q 019924 73 NRLEGPLPPSLVNCHHLEVLNVGNNQ-INDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFT 150 (334)
Q Consensus 73 n~l~~~~p~~l~~l~~L~~L~Ls~N~-l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~ 150 (334)
|++++..|..+..+++|++|++++|. ++. +| .+..+++|++|++++|++++. + .+..+++|+.|++++|++.
T Consensus 122 n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~-~~-~l~~l~~L~~L~l~~n~i~~~-~---~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 122 SAHDDSILTKINTLPKVNSIDLSYNGAITD-IM-PLKTLPELKSLNIQFDGVHDY-R---GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp SBCBGGGHHHHTTCSSCCEEECCSCTBCCC-CG-GGGGCSSCCEEECTTBCCCCC-T---TGGGCSSCCEEEECBC---
T ss_pred CccCcHhHHHHhhCCCCCEEEccCCCCccc-cH-hhcCCCCCCEEECCCCCCcCh-H---HhccCCCCCEEEeeCcccC
Confidence 77776566667777777777777776 544 33 466777777777777776542 2 2356677777777777664
No 103
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.79 E-value=5.1e-19 Score=159.40 Aligned_cols=140 Identities=29% Similarity=0.230 Sum_probs=119.4
Q ss_pred CcccEEEcCCCCCCCCCCCCCC-CCCeEECCCCCCCCEEeCCCCcCccccCcCccCCCCccEEeCCCCccccCCCccccC
Q 019924 7 ATLYYLDLSNNFLTNIEYFPPT-NMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVN 85 (334)
Q Consensus 7 ~~L~~L~Ls~n~l~~~~~~~~~-~L~~L~l~~n~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~ 85 (334)
+.++.|+|++|.++++++..+. ++..| ++|+|++|+|++..+..|..+++|++|+|++|+++...+..|.+
T Consensus 39 ~~l~~L~Ls~N~l~~l~~~~~~~~l~~L--------~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 110 (361)
T 2xot_A 39 SYTALLDLSHNNLSRLRAEWTPTRLTNL--------HSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSD 110 (361)
T ss_dssp TTCSEEECCSSCCCEECTTSSSSCCTTC--------CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTT
T ss_pred CCCCEEECCCCCCCccChhhhhhccccc--------CEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCC
Confidence 4589999999999998876665 66555 99999999999888889999999999999999999877888999
Q ss_pred CCCCCEEEccCCcCCcCCChhhhcCCCCCEEEeecccCcccCCCCCC-CCCCCCccEEEecCCccccccc
Q 019924 86 CHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTT-IVPFPSLRIIDLSHNEFTGVLL 154 (334)
Q Consensus 86 l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~-~~~l~~L~~L~Ls~N~l~~~~~ 154 (334)
+++|++|+|++|+++...|..|..+++|++|+|++|++++..+..+. +..+++|+.|++++|.+++..+
T Consensus 111 l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~ 180 (361)
T 2xot_A 111 LQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPL 180 (361)
T ss_dssp CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCH
T ss_pred CcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCH
Confidence 99999999999999998889999999999999999999754333221 1468999999999999986543
No 104
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.79 E-value=1.6e-20 Score=174.57 Aligned_cols=237 Identities=17% Similarity=0.170 Sum_probs=129.6
Q ss_pred CCCcccEEEcCCCCCCCCCC--------CCCCCCCeEECCCC-----------------CCCCEEeCCCCcCccccCcCc
Q 019924 5 GIATLYYLDLSNNFLTNIEY--------FPPTNMTQLNFDSN-----------------LTHKVLDMRMNNFNGKIPRKF 59 (334)
Q Consensus 5 ~l~~L~~L~Ls~n~l~~~~~--------~~~~~L~~L~l~~n-----------------~~L~~L~Ls~N~l~~~~p~~~ 59 (334)
++++|++|++++|.+++..+ ...++|++|++++| ++|++|++++|.++...+..+
T Consensus 111 ~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l 190 (461)
T 1z7x_W 111 TLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVL 190 (461)
T ss_dssp SCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHH
T ss_pred cCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHH
Confidence 56777777777777764322 22446777777776 567777777777664433333
Q ss_pred c-----CCCCccEEeCCCCccccC----CCccccCCCCCCEEEccCCcCCcCC-----ChhhhcCCCCCEEEeecccCcc
Q 019924 60 V-----KSCNLTSLNLNGNRLEGP----LPPSLVNCHHLEVLNVGNNQINDNF-----PNWLEILPELQVLILRSNRFWG 125 (334)
Q Consensus 60 ~-----~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~~-----~~~l~~l~~L~~L~L~~N~l~~ 125 (334)
. ..++|++|++++|.++.. ++..+..+++|++|++++|.+++.. +..+..+++|++|++++|++++
T Consensus 191 ~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~ 270 (461)
T 1z7x_W 191 CQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITA 270 (461)
T ss_dssp HHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCH
T ss_pred HHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCH
Confidence 2 245677777777776643 3555566677777777777665422 1222245667777777776643
Q ss_pred c----CCCCCCCCCCCCccEEEecCCccccccchhhHHhH----HhhhhcCCcccccccc-----c-CCCCCCceeeEEE
Q 019924 126 P----IGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNF----KAMMHGNNISVEVDYM-----T-PLNSSNYYESIIL 191 (334)
Q Consensus 126 ~----~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l----~~L~~~~~~~~~~~~~-----~-~~~~~~~l~~~~~ 191 (334)
. ++..+ ..+++|+.|++++|.+.+..+..+...+ +.|+.++...+.+... . .......+..+++
T Consensus 271 ~~~~~l~~~l--~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L 348 (461)
T 1z7x_W 271 KGCGDLCRVL--RAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQI 348 (461)
T ss_dssp HHHHHHHHHH--HHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEEC
T ss_pred HHHHHHHHHH--hhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEc
Confidence 2 22222 3456666777776666543322221111 1222222211111100 0 0000112223333
Q ss_pred EEeccchhh---h-hh----hhheeEEEccCccccc----CCchhhhCcCCCCeeeccCCccCC
Q 019924 192 TIKGIDIKM---E-RI----LTIFMTIDLSSNKFQG----GIPEVVGKLNLLKGLNISHNNLTG 243 (334)
Q Consensus 192 ~~~~~~~~~---~-~~----l~~L~~L~Ls~N~l~~----~~p~~l~~l~~L~~L~Ls~N~l~~ 243 (334)
..+.+.... . .. .++|+.|++++|.+++ .+|..+..+++|++|++++|++++
T Consensus 349 s~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~ 412 (461)
T 1z7x_W 349 SNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGD 412 (461)
T ss_dssp CSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCH
T ss_pred cCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCH
Confidence 333332221 1 11 4588888888888885 677788888888888888888875
No 105
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.78 E-value=7.4e-19 Score=157.69 Aligned_cols=129 Identities=14% Similarity=0.090 Sum_probs=86.6
Q ss_pred cEEEcCCCCCCCCCCCCCCCCCeEECCCCCCCCEEeCCCCcCccccCcCccCCCCccEEeCCCCccccCCC-ccccCCCC
Q 019924 10 YYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLP-PSLVNCHH 88 (334)
Q Consensus 10 ~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~ 88 (334)
++++.++++++.++..-++++ ++|+|++|+|+...+..|.++++|++|+|++|++.+.+| ..|.++++
T Consensus 12 ~~v~C~~~~Lt~iP~~l~~~l-----------~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~ 80 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDLPRNA-----------IELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPK 80 (350)
T ss_dssp TEEEEESTTCCSCCTTCCTTC-----------SEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTT
T ss_pred CEEEecCCCCCccCcCcCCCC-----------CEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchh
Confidence 567888888887764333333 667777788875555677888888888888887754443 45677777
Q ss_pred CCE-EEccCCcCCcCCChhhhcCCCCCEEEeecccCcccCCCCCCCCCCCCccEEEecC-Ccccc
Q 019924 89 LEV-LNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSH-NEFTG 151 (334)
Q Consensus 89 L~~-L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~-N~l~~ 151 (334)
+++ +.++.|+++...|..|..+++|++|++++|++.+..+..+ ....++..|++.+ +.+..
T Consensus 81 l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~--~~~~~l~~l~l~~~~~i~~ 143 (350)
T 4ay9_X 81 LHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHK--IHSLQKVLLDIQDNINIHT 143 (350)
T ss_dssp CCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTT--CCBSSCEEEEEESCTTCCE
T ss_pred hhhhhcccCCcccccCchhhhhccccccccccccccccCCchhh--cccchhhhhhhcccccccc
Confidence 664 5556677777667777788888888888887765443333 4555667777755 34443
No 106
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.78 E-value=2.2e-20 Score=166.55 Aligned_cols=182 Identities=16% Similarity=0.146 Sum_probs=139.3
Q ss_pred CCCCEEeCCCCcCccccCcCccCCCCccEEeCCCCccccC-CCccccCCCCCCEEEccCCcCCcCCChhhhcCCCCCEEE
Q 019924 39 LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGP-LPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLI 117 (334)
Q Consensus 39 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~-~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ 117 (334)
+.++.|++++|.+++..+. +..+++|++|++++|.+++. +|..+..+++|++|++++|.+++..+..++.+++|++|+
T Consensus 70 ~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~ 148 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLN 148 (336)
T ss_dssp TTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEE
T ss_pred ccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEE
Confidence 4558899999999976655 56799999999999999865 788889999999999999999887888899999999999
Q ss_pred eecc-cCccc-CCCCCCCCCCCCccEEEecCC-ccccccchhhHHhHH-hhhhcCCcccccccccCCCCCCceeeEEEEE
Q 019924 118 LRSN-RFWGP-IGENTTIVPFPSLRIIDLSHN-EFTGVLLTGYLDNFK-AMMHGNNISVEVDYMTPLNSSNYYESIILTI 193 (334)
Q Consensus 118 L~~N-~l~~~-~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~l~-~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 193 (334)
+++| .+++. ++..+ ..+++|++|++++| .+++......+..++ +|+.++....... +
T Consensus 149 L~~~~~l~~~~l~~~~--~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~-----------------~ 209 (336)
T 2ast_B 149 LSGCSGFSEFALQTLL--SSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKN-----------------L 209 (336)
T ss_dssp CTTCBSCCHHHHHHHH--HHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGG-----------------S
T ss_pred CCCCCCCCHHHHHHHH--hcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCccc-----------------C
Confidence 9999 67542 33323 67899999999999 887643233355555 5544443211000 0
Q ss_pred e-ccchhhhhhhhheeEEEccCcc-cccCCchhhhCcCCCCeeeccCCc
Q 019924 194 K-GIDIKMERILTIFMTIDLSSNK-FQGGIPEVVGKLNLLKGLNISHNN 240 (334)
Q Consensus 194 ~-~~~~~~~~~l~~L~~L~Ls~N~-l~~~~p~~l~~l~~L~~L~Ls~N~ 240 (334)
. ..-......+++|+.|++++|. +++..+..+.++++|+.|++++|.
T Consensus 210 ~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~ 258 (336)
T 2ast_B 210 QKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCY 258 (336)
T ss_dssp CHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCT
T ss_pred CHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCC
Confidence 0 0012234458899999999999 787888899999999999999995
No 107
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.78 E-value=1.9e-18 Score=163.70 Aligned_cols=161 Identities=25% Similarity=0.276 Sum_probs=133.5
Q ss_pred CCcccEEEcCCCCCCCCCCCCCCCCCeEECCCC---------CCCCEEeCCCCcCccccCcCccCCCCccEEeCCCCccc
Q 019924 6 IATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSN---------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLE 76 (334)
Q Consensus 6 l~~L~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n---------~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~ 76 (334)
+++|++|++++|.|+.++ ..+++|+.|++++| .+|++|++++|++++ +|. .+++|+.|++++|+++
T Consensus 79 ~~~L~~L~Ls~N~l~~ip-~~l~~L~~L~Ls~N~l~~ip~l~~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~ 153 (571)
T 3cvr_A 79 PPQITVLEITQNALISLP-ELPASLEYLDACDNRLSTLPELPASLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLT 153 (571)
T ss_dssp CTTCSEEECCSSCCSCCC-CCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCS
T ss_pred cCCCCEEECcCCCCcccc-cccCCCCEEEccCCCCCCcchhhcCCCEEECCCCcCCC-CCC---cCccccEEeCCCCccC
Confidence 367999999999999877 77899999999999 289999999999996 666 6899999999999999
Q ss_pred cCCCccccCCCCCCEEEccCCcCCcCCChhhhcCCCCCEEEeecccCcccCCCCCCCCCCCCc-------cEEEecCCcc
Q 019924 77 GPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSL-------RIIDLSHNEF 149 (334)
Q Consensus 77 ~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L-------~~L~Ls~N~l 149 (334)
+ +|. .+++|++|++++|++++ +|. +. ++|+.|++++|+|+ .+|. + .. +| +.|++++|.+
T Consensus 154 ~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~--~~--~L~~~~~~L~~L~Ls~N~l 219 (571)
T 3cvr_A 154 M-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA-V--PV--RNHHSEETEIFFRCRENRI 219 (571)
T ss_dssp C-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC-C--C----------CCEEEECCSSCC
T ss_pred c-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chhh-H--HH--hhhcccccceEEecCCCcc
Confidence 5 665 57899999999999998 666 65 99999999999997 5555 4 32 66 9999999999
Q ss_pred ccccchhhHHhHHhhhhcCCcccccccccCCCCCCceeeEEEEEeccchhhhhhhhheeEEEccCcccccCCchhhhCcC
Q 019924 150 TGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLN 229 (334)
Q Consensus 150 ~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~ 229 (334)
+.. |...+ .+++|+.|+|++|.+++.+|..+..++
T Consensus 220 ~~l-p~~l~--------------------------------------------~l~~L~~L~L~~N~l~~~~p~~l~~l~ 254 (571)
T 3cvr_A 220 THI-PENIL--------------------------------------------SLDPTCTIILEDNPLSSRIRESLSQQT 254 (571)
T ss_dssp CCC-CGGGG--------------------------------------------GSCTTEEEECCSSSCCHHHHHHHHHHH
T ss_pred eec-CHHHh--------------------------------------------cCCCCCEEEeeCCcCCCcCHHHHHHhh
Confidence 853 33211 167789999999999999999887764
Q ss_pred C
Q 019924 230 L 230 (334)
Q Consensus 230 ~ 230 (334)
.
T Consensus 255 ~ 255 (571)
T 3cvr_A 255 A 255 (571)
T ss_dssp H
T ss_pred c
Confidence 3
No 108
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.76 E-value=5.7e-21 Score=177.62 Aligned_cols=240 Identities=15% Similarity=0.097 Sum_probs=146.6
Q ss_pred CCCcccEEEcCCCCCCCCCC-------CCCCCCCeEECCCC--------------C----CCCEEeCCCCcCcc----cc
Q 019924 5 GIATLYYLDLSNNFLTNIEY-------FPPTNMTQLNFDSN--------------L----THKVLDMRMNNFNG----KI 55 (334)
Q Consensus 5 ~l~~L~~L~Ls~n~l~~~~~-------~~~~~L~~L~l~~n--------------~----~L~~L~Ls~N~l~~----~~ 55 (334)
.+++|++|++++|.++.... ..+++|++|++++| + +|++|++++|+++. .+
T Consensus 26 ~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l 105 (461)
T 1z7x_W 26 LLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVL 105 (461)
T ss_dssp HHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred hcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHH
Confidence 46788889999888874321 45678889999888 2 68999999998884 45
Q ss_pred CcCccCCCCccEEeCCCCccccCCCccc-----cCCCCCCEEEccCCcCCcCC----ChhhhcCCCCCEEEeecccCccc
Q 019924 56 PRKFVKSCNLTSLNLNGNRLEGPLPPSL-----VNCHHLEVLNVGNNQINDNF----PNWLEILPELQVLILRSNRFWGP 126 (334)
Q Consensus 56 p~~~~~l~~L~~L~L~~n~l~~~~p~~l-----~~l~~L~~L~Ls~N~l~~~~----~~~l~~l~~L~~L~L~~N~l~~~ 126 (334)
+..+..+++|++|++++|.+++..+..+ ...++|++|++++|++++.. +..+..+++|++|++++|.+++.
T Consensus 106 ~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~ 185 (461)
T 1z7x_W 106 SSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEA 185 (461)
T ss_dssp HHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHH
T ss_pred HHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchH
Confidence 7788888899999999998874433322 23567999999999887643 45566788999999999987543
Q ss_pred CCCCCC---CCCCCCccEEEecCCccccccch---hhHHhHHhhhhcCCcccccccc------cCC-CCCCceeeEEEEE
Q 019924 127 IGENTT---IVPFPSLRIIDLSHNEFTGVLLT---GYLDNFKAMMHGNNISVEVDYM------TPL-NSSNYYESIILTI 193 (334)
Q Consensus 127 ~~~~~~---~~~l~~L~~L~Ls~N~l~~~~~~---~~~~~l~~L~~~~~~~~~~~~~------~~~-~~~~~l~~~~~~~ 193 (334)
.+..+. ....++|+.|++++|.+++.... ..+..++.|+.++...+.+... ... .....++.+.+..
T Consensus 186 ~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~ 265 (461)
T 1z7x_W 186 GVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWE 265 (461)
T ss_dssp HHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTT
T ss_pred HHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcC
Confidence 222110 01256889999999988764211 2234445555444433222110 000 0112222222222
Q ss_pred eccch-------hhhhhhhheeEEEccCcccccCCchhhhCc-----CCCCeeeccCCccCCC
Q 019924 194 KGIDI-------KMERILTIFMTIDLSSNKFQGGIPEVVGKL-----NLLKGLNISHNNLTGL 244 (334)
Q Consensus 194 ~~~~~-------~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l-----~~L~~L~Ls~N~l~~l 244 (334)
+.+.. ..+..+++|++|++++|.+++..+..+... ++|+.|++++|.+++.
T Consensus 266 n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~ 328 (461)
T 1z7x_W 266 CGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAA 328 (461)
T ss_dssp SCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGG
T ss_pred CCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchH
Confidence 22222 122235667777777776665444444322 5677777777776643
No 109
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.76 E-value=4e-18 Score=148.92 Aligned_cols=128 Identities=27% Similarity=0.307 Sum_probs=109.6
Q ss_pred CCCcccEEEcCCCCCCCCCCCCCCCCCeEECCCCCCCCEEeCCCCcCccccCcCccCCCCccEEeCCCCccccCCCcccc
Q 019924 5 GIATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLV 84 (334)
Q Consensus 5 ~l~~L~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~ 84 (334)
.+++|++|++++|.+++.++ +..+. +|++|++++|++++ +| .+..+++|++|++++|++++. +.+.
T Consensus 66 ~l~~L~~L~L~~n~l~~~~~--l~~l~--------~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~L~~n~i~~~--~~l~ 131 (291)
T 1h6t_A 66 YLPNVTKLFLNGNKLTDIKP--LANLK--------NLGWLFLDENKVKD-LS-SLKDLKKLKSLSLEHNGISDI--NGLV 131 (291)
T ss_dssp GCTTCCEEECCSSCCCCCGG--GTTCT--------TCCEEECCSSCCCC-GG-GGTTCTTCCEEECTTSCCCCC--GGGG
T ss_pred cCCCCCEEEccCCccCCCcc--cccCC--------CCCEEECCCCcCCC-Ch-hhccCCCCCEEECCCCcCCCC--hhhc
Confidence 57899999999999998765 44444 44999999999985 33 489999999999999999853 5688
Q ss_pred CCCCCCEEEccCCcCCcCCChhhhcCCCCCEEEeecccCcccCCCCCCCCCCCCccEEEecCCccccc
Q 019924 85 NCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGV 152 (334)
Q Consensus 85 ~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 152 (334)
.+++|++|++++|++++. ..+..+++|++|++++|++++..+ +..+++|+.|++++|.+++.
T Consensus 132 ~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~----l~~l~~L~~L~L~~N~i~~l 193 (291)
T 1h6t_A 132 HLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP----LAGLTKLQNLYLSKNHISDL 193 (291)
T ss_dssp GCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG----GTTCTTCCEEECCSSCCCBC
T ss_pred CCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh----hcCCCccCEEECCCCcCCCC
Confidence 999999999999999884 678999999999999999976554 47899999999999999864
No 110
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.75 E-value=6e-18 Score=138.61 Aligned_cols=108 Identities=24% Similarity=0.253 Sum_probs=77.1
Q ss_pred CEEeCCCCcCccccCcCccCCCCccEEeCCCCccccCCCc-cccCCCCCCEEEccCCcCCcCCChhhhcCCCCCEEEeec
Q 019924 42 KVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPP-SLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRS 120 (334)
Q Consensus 42 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~-~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~ 120 (334)
+++++++|+++ .+|..+.. ++++|++++|++++..+. .|.++++|++|++++|++++..|..|..+++|++|++++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 67788888876 56665543 778888888888755543 377778888888888888777677777777888888888
Q ss_pred ccCcccCCCCCCCCCCCCccEEEecCCccccccc
Q 019924 121 NRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLL 154 (334)
Q Consensus 121 N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 154 (334)
|++++..+..+ ..+++|++|++++|++++..+
T Consensus 88 N~l~~~~~~~~--~~l~~L~~L~L~~N~l~~~~~ 119 (192)
T 1w8a_A 88 NKIKEISNKMF--LGLHQLKTLNLYDNQISCVMP 119 (192)
T ss_dssp CCCCEECSSSS--TTCTTCCEEECCSSCCCEECT
T ss_pred CcCCccCHHHh--cCCCCCCEEECCCCcCCeeCH
Confidence 87766655544 667777777777777765543
No 111
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.75 E-value=2.9e-17 Score=134.56 Aligned_cols=131 Identities=20% Similarity=0.163 Sum_probs=114.5
Q ss_pred cEEEcCCCCCCCCCCCCCCCCCeEECCCCCCCCEEeCCCCcCccccCcCccCCCCccEEeCCCCccccCCCccccCCCCC
Q 019924 10 YYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHL 89 (334)
Q Consensus 10 ~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L 89 (334)
+++++++|.++.++...+++ +++|++++|+++ .+|..|..+++|+.|++++|+|++..+..|.++++|
T Consensus 13 ~~l~~~~~~l~~ip~~~~~~-----------l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L 80 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGIPRD-----------VTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQL 80 (193)
T ss_dssp TEEECTTSCCSSCCSCCCTT-----------CCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred CEEEcCCCCCCcCCCCCCCC-----------CCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCC
Confidence 67999999999876543333 378899999998 778999999999999999999998888899999999
Q ss_pred CEEEccCCcCCcCCChhhhcCCCCCEEEeecccCcccCCCCCCCCCCCCccEEEecCCccccccc
Q 019924 90 EVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLL 154 (334)
Q Consensus 90 ~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 154 (334)
++|++++|++++..+..|..+++|++|+|++|++++..+..+ ..+++|+.|++++|.+...-.
T Consensus 81 ~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~L~~N~~~C~c~ 143 (193)
T 2wfh_A 81 LTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAF--NDLSALSHLAIGANPLYCDCN 143 (193)
T ss_dssp CEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTT--TTCTTCCEEECCSSCEECSGG
T ss_pred CEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhh--hcCccccEEEeCCCCeecCCc
Confidence 999999999999888899999999999999999976555444 789999999999999976433
No 112
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.74 E-value=1.2e-17 Score=159.57 Aligned_cols=158 Identities=25% Similarity=0.264 Sum_probs=128.0
Q ss_pred CCCcccEEEcCCCCCCCCCCCCCCCCCeEECCCCCCCCEEeCCCCcCccccCcCccCCCCccEEeCCCCccccCCCcccc
Q 019924 5 GIATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLV 84 (334)
Q Consensus 5 ~l~~L~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~ 84 (334)
.+++|+.|+|++|.++++++ +..+ ++|+.|+|++|++++ +| .+..+++|+.|+|++|++++ + +.+.
T Consensus 63 ~l~~L~~L~Ls~N~l~~~~~--l~~l--------~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L~Ls~N~l~~-l-~~l~ 128 (605)
T 1m9s_A 63 YLPNVTKLFLNGNKLTDIKP--LTNL--------KNLGWLFLDENKIKD-LS-SLKDLKKLKSLSLEHNGISD-I-NGLV 128 (605)
T ss_dssp GCTTCCEEECTTSCCCCCGG--GGGC--------TTCCEEECCSSCCCC-CT-TSTTCTTCCEEECTTSCCCC-C-GGGG
T ss_pred cCCCCCEEEeeCCCCCCChh--hccC--------CCCCEEECcCCCCCC-Ch-hhccCCCCCEEEecCCCCCC-C-cccc
Confidence 57999999999999998765 3333 445999999999985 33 78999999999999999985 3 4688
Q ss_pred CCCCCCEEEccCCcCCcCCChhhhcCCCCCEEEeecccCcccCCCCCCCCCCCCccEEEecCCccccccchhhHHhHHhh
Q 019924 85 NCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAM 164 (334)
Q Consensus 85 ~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L 164 (334)
.+++|+.|+|++|.+++. ..+..+++|+.|+|++|++.+..+ +..+++|+.|+|++|.+++... +
T Consensus 129 ~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~----l~~l~~L~~L~Ls~N~i~~l~~---l------ 193 (605)
T 1m9s_A 129 HLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP----LAGLTKLQNLYLSKNHISDLRA---L------ 193 (605)
T ss_dssp GCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG----GTTCTTCCEEECCSSCCCBCGG---G------
T ss_pred CCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh----hccCCCCCEEECcCCCCCCChH---H------
Confidence 999999999999999885 678899999999999999987655 3789999999999999986411 1
Q ss_pred hhcCCcccccccccCCCCCCceeeEEEEEeccchhhhhhhhheeEEEccCcccccCCchhhhCc
Q 019924 165 MHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKL 228 (334)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l 228 (334)
..+++|+.|+|++|.+++.....+..+
T Consensus 194 -------------------------------------~~l~~L~~L~L~~N~l~~~p~~~~~~l 220 (605)
T 1m9s_A 194 -------------------------------------AGLKNLDVLELFSQECLNKPINHQSNL 220 (605)
T ss_dssp -------------------------------------TTCTTCSEEECCSEEEECCCCCCCSSC
T ss_pred -------------------------------------ccCCCCCEEEccCCcCcCCcccccccE
Confidence 126778999999999986544433433
No 113
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.74 E-value=9.3e-20 Score=165.71 Aligned_cols=43 Identities=12% Similarity=0.088 Sum_probs=33.8
Q ss_pred hhhhhheeEEEccCcccccC----CchhhhC--cCCCCeeeccCCccCC
Q 019924 201 ERILTIFMTIDLSSNKFQGG----IPEVVGK--LNLLKGLNISHNNLTG 243 (334)
Q Consensus 201 ~~~l~~L~~L~Ls~N~l~~~----~p~~l~~--l~~L~~L~Ls~N~l~~ 243 (334)
+..+++|+.|+|++|.+++. +|..+.. +++|+.|+|++|++++
T Consensus 240 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~ 288 (386)
T 2ca6_A 240 LKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIEL 288 (386)
T ss_dssp GGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBH
T ss_pred HccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCH
Confidence 44567899999999998865 5666644 8889999999998886
No 114
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.74 E-value=6.2e-17 Score=130.70 Aligned_cols=133 Identities=19% Similarity=0.146 Sum_probs=114.1
Q ss_pred ccEEEcCCCCCCCCCCCCCCCCCeEECCCCCCCCEEeCCCCcCccccCcCccCCCCccEEeCCCCccccCCCccccCCCC
Q 019924 9 LYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHH 88 (334)
Q Consensus 9 L~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~ 88 (334)
.+.+++++|.++.++...+++ |++|++++|++++..+..|..+++|++|++++|++++..+..+.++++
T Consensus 9 ~~~l~~~~~~l~~~p~~~~~~-----------l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 77 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPTGIPSS-----------ATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTK 77 (177)
T ss_dssp TTEEECCSSCCSSCCTTCCTT-----------CSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTT
T ss_pred CCEEEecCCCCccCCCCCCCC-----------CcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCc
Confidence 578999999998876544333 378899999999777778899999999999999999777777899999
Q ss_pred CCEEEccCCcCCcCCChhhhcCCCCCEEEeecccCcccCCCCCCCCCCCCccEEEecCCccccccc
Q 019924 89 LEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLL 154 (334)
Q Consensus 89 L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 154 (334)
|++|++++|++++..+..+..+++|++|++++|++++..+..+ ..+++|+.|++++|.+.+..+
T Consensus 78 L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~--~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 78 LTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIF--DRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTT--TTCTTCCEEECCSSCBCCCHH
T ss_pred cCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHh--cCCcccCEEEecCCCeeccCc
Confidence 9999999999999877788999999999999999986555434 779999999999999987644
No 115
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.73 E-value=8.4e-18 Score=134.65 Aligned_cols=80 Identities=28% Similarity=0.270 Sum_probs=40.3
Q ss_pred CEEeCCCCcCc-cccCcCccCCCCccEEeCCCCccccCCCccccCCCCCCEEEccCCcCCcCCChhhhcCCCCCEEEeec
Q 019924 42 KVLDMRMNNFN-GKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRS 120 (334)
Q Consensus 42 ~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~ 120 (334)
++|++++|+++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|++++.+|..+..+++|++|++++
T Consensus 27 ~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 104 (168)
T 2ell_A 27 RELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSG 104 (168)
T ss_dssp SEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBS
T ss_pred CEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccC
Confidence 45555555554 34444455555555555555555432 3445555555555555555544444444455555555555
Q ss_pred ccC
Q 019924 121 NRF 123 (334)
Q Consensus 121 N~l 123 (334)
|++
T Consensus 105 N~l 107 (168)
T 2ell_A 105 NKL 107 (168)
T ss_dssp SSC
T ss_pred Ccc
Confidence 544
No 116
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.72 E-value=8.2e-18 Score=164.46 Aligned_cols=112 Identities=23% Similarity=0.265 Sum_probs=102.0
Q ss_pred CCCCEEeCCCCcCccccCcCccCCCCccEEeCCCCccccCCCccccCCCCCCEEEccCCcCCcCCChhhhcCCCCCEEEe
Q 019924 39 LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLIL 118 (334)
Q Consensus 39 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L 118 (334)
..|++|+|++|.+. .+|..+..+++|++|+|++|.|+ .+|..|.++++|++|+|++|.|+. +|..|+.+++|++|+|
T Consensus 224 ~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp~~~~~l~~L~~L~L 300 (727)
T 4b8c_D 224 QLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTS-LPAELGSCFQLKYFYF 300 (727)
T ss_dssp CCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCSS-CCSSGGGGTTCSEEEC
T ss_pred CCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCCc-cChhhcCCCCCCEEEC
Confidence 56799999999998 77877889999999999999999 889999999999999999999995 7999999999999999
Q ss_pred ecccCcccCCCCCCCCCCCCccEEEecCCccccccchh
Q 019924 119 RSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTG 156 (334)
Q Consensus 119 ~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 156 (334)
++|.++ .+|..+ ..+++|+.|+|++|.+++.++..
T Consensus 301 ~~N~l~-~lp~~~--~~l~~L~~L~L~~N~l~~~~p~~ 335 (727)
T 4b8c_D 301 FDNMVT-TLPWEF--GNLCNLQFLGVEGNPLEKQFLKI 335 (727)
T ss_dssp CSSCCC-CCCSST--TSCTTCCCEECTTSCCCSHHHHH
T ss_pred CCCCCC-ccChhh--hcCCCccEEeCCCCccCCCChHH
Confidence 999995 667665 89999999999999999877755
No 117
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.72 E-value=6.9e-17 Score=132.34 Aligned_cols=103 Identities=25% Similarity=0.389 Sum_probs=53.1
Q ss_pred CEEeCCCCcCccccCcCccCCCCccEEeCCCCccccCCCccccCCCCCCEEEccCCcCCcCCChhhhcCCCCCEEEeecc
Q 019924 42 KVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSN 121 (334)
Q Consensus 42 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N 121 (334)
+++++++|+++ .+|..+. .+|++|++++|+++ .+|..|.++++|++|++++|++++..+..|..+++|++|+|++|
T Consensus 13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 45556666655 4444332 35556666666555 44555555555555555555555554455555555555555555
Q ss_pred cCcccCCCCCCCCCCCCccEEEecCCccc
Q 019924 122 RFWGPIGENTTIVPFPSLRIIDLSHNEFT 150 (334)
Q Consensus 122 ~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~ 150 (334)
++++..+..+ ..+++|+.|++++|.++
T Consensus 89 ~l~~i~~~~f--~~l~~L~~L~L~~N~l~ 115 (193)
T 2wfh_A 89 RLRCIPPRTF--DGLKSLRLLSLHGNDIS 115 (193)
T ss_dssp CCCBCCTTTT--TTCTTCCEEECCSSCCC
T ss_pred ccCEeCHHHh--CCCCCCCEEECCCCCCC
Confidence 5544333322 44444444444444443
No 118
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.72 E-value=9.9e-18 Score=134.21 Aligned_cols=137 Identities=20% Similarity=0.089 Sum_probs=114.3
Q ss_pred CCCcccEEEcCCCCCC-CCCCCCCCCCCeEECCCCCCCCEEeCCCCcCccccCcCccCCCCccEEeCCCCccccCCCccc
Q 019924 5 GIATLYYLDLSNNFLT-NIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSL 83 (334)
Q Consensus 5 ~l~~L~~L~Ls~n~l~-~~~~~~~~~L~~L~l~~n~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l 83 (334)
..++|+.|++++|.++ +..+..+..+..| ++|++++|.+++. ..+..+++|++|++++|++++.+|..+
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L--------~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 91 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNL--------EFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLA 91 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGC--------CEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHH
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCC--------CEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHH
Confidence 4578999999999998 4444444555544 9999999999865 789999999999999999997788888
Q ss_pred cCCCCCCEEEccCCcCCcCCC-hhhhcCCCCCEEEeecccCcccCC---CCCCCCCCCCccEEEecCCcccccc
Q 019924 84 VNCHHLEVLNVGNNQINDNFP-NWLEILPELQVLILRSNRFWGPIG---ENTTIVPFPSLRIIDLSHNEFTGVL 153 (334)
Q Consensus 84 ~~l~~L~~L~Ls~N~l~~~~~-~~l~~l~~L~~L~L~~N~l~~~~~---~~~~~~~l~~L~~L~Ls~N~l~~~~ 153 (334)
.++++|++|++++|.+++..+ ..+..+++|++|++++|++++..+ .. +..+++|+.|++++|.+....
T Consensus 92 ~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~--~~~l~~L~~L~l~~n~~~~~~ 163 (168)
T 2ell_A 92 EKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESV--FKLLPQLTYLDGYDREDQEAP 163 (168)
T ss_dssp HHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHH--HTTCSSCCEETTEETTSCBCC
T ss_pred hhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHH--HHhCccCcEecCCCCChhhcc
Confidence 889999999999999988432 788999999999999999975543 23 378999999999999987543
No 119
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.71 E-value=1.4e-16 Score=137.08 Aligned_cols=137 Identities=21% Similarity=0.294 Sum_probs=85.5
Q ss_pred CCCcccEEEcCCCCCCCCCC-CCCCCCCeEECCCC-----------CCCCEEeCCCCcCccccCcCccCCCCccEEeCCC
Q 019924 5 GIATLYYLDLSNNFLTNIEY-FPPTNMTQLNFDSN-----------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNG 72 (334)
Q Consensus 5 ~l~~L~~L~Ls~n~l~~~~~-~~~~~L~~L~l~~n-----------~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~ 72 (334)
++++|++|++++|.++.++. ..+++|+.|++++| ++|++|++++|++++ +|.. .. ++|+.|++++
T Consensus 39 ~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i~~~~~l~~l~~L~~L~L~~N~l~~-l~~~-~~-~~L~~L~L~~ 115 (263)
T 1xeu_A 39 ELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDLSPLKDLTKLEELSVNRNRLKN-LNGI-PS-ACLSRLFLDN 115 (263)
T ss_dssp HHTTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSSCCSC-CTTC-CC-SSCCEEECCS
T ss_pred hcCcCcEEECcCCCcccchHHhhCCCCCEEECCCCccCCChhhccCCCCCEEECCCCccCC-cCcc-cc-CcccEEEccC
Confidence 46899999999999987764 45666666666666 456666666666663 2322 22 5666666666
Q ss_pred CccccCCCccccCCCCCCEEEccCCcCCcCCChhhhcCCCCCEEEeecccCcccCCCCCCCCCCCCccEEEecCCccccc
Q 019924 73 NRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGV 152 (334)
Q Consensus 73 n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 152 (334)
|++++. + .+..+++|++|++++|++++. + .+..+++|++|++++|++++. .. +..+++|+.|++++|.+.+.
T Consensus 116 N~l~~~-~-~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~--l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 116 NELRDT-D-SLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--GG--LTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp SCCSBS-G-GGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--TT--STTCCCCCEEEEEEEEEECC
T ss_pred CccCCC-h-hhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--HH--hccCCCCCEEeCCCCcccCC
Confidence 666632 2 466666666666666666653 2 456666666666666666543 22 25566666666666666543
No 120
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.71 E-value=1.8e-17 Score=130.03 Aligned_cols=82 Identities=22% Similarity=0.198 Sum_probs=46.9
Q ss_pred CCEEeCCCCcCc-cccCcCccCCCCccEEeCCCCccccCCCccccCCCCCCEEEccCCcCCcCCChhhhcCCCCCEEEee
Q 019924 41 HKVLDMRMNNFN-GKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILR 119 (334)
Q Consensus 41 L~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~ 119 (334)
++.|++++|.++ +.+|..+..+++|++|++++|++++. ..+.++++|++|++++|.+++.+|..+..+++|++|+++
T Consensus 19 l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls 96 (149)
T 2je0_A 19 VKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLS 96 (149)
T ss_dssp CSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECT
T ss_pred CeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECC
Confidence 355566666665 45555555666666666666666533 445556666666666666655455555555555555555
Q ss_pred cccCc
Q 019924 120 SNRFW 124 (334)
Q Consensus 120 ~N~l~ 124 (334)
+|+++
T Consensus 97 ~N~i~ 101 (149)
T 2je0_A 97 GNKIK 101 (149)
T ss_dssp TSCCC
T ss_pred CCcCC
Confidence 55553
No 121
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.70 E-value=1.9e-17 Score=129.83 Aligned_cols=130 Identities=22% Similarity=0.161 Sum_probs=107.9
Q ss_pred CCCcccEEEcCCCCCC-CCCCCCCCCCCeEECCCCCCCCEEeCCCCcCccccCcCccCCCCccEEeCCCCccccCCCccc
Q 019924 5 GIATLYYLDLSNNFLT-NIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSL 83 (334)
Q Consensus 5 ~l~~L~~L~Ls~n~l~-~~~~~~~~~L~~L~l~~n~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l 83 (334)
..++|+.|++++|.++ +..+..+..+..| ++|++++|++++. ..+..+++|++|++++|++++.+|..+
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L--------~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~ 84 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEEL--------EFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLA 84 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSCCTTCTTC--------CEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHH
T ss_pred CCccCeEEEccCCcCChhHHHHHHhhcCCC--------cEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHh
Confidence 4578999999999998 4445444555444 9999999999865 788999999999999999997788888
Q ss_pred cCCCCCCEEEccCCcCCcC-CChhhhcCCCCCEEEeecccCcccCC---CCCCCCCCCCccEEEecC
Q 019924 84 VNCHHLEVLNVGNNQINDN-FPNWLEILPELQVLILRSNRFWGPIG---ENTTIVPFPSLRIIDLSH 146 (334)
Q Consensus 84 ~~l~~L~~L~Ls~N~l~~~-~~~~l~~l~~L~~L~L~~N~l~~~~~---~~~~~~~l~~L~~L~Ls~ 146 (334)
.++++|++|++++|++++. .+..++.+++|++|++++|++++..+ .. +..+++|+.||+++
T Consensus 85 ~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~--~~~l~~L~~L~l~d 149 (149)
T 2je0_A 85 EKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENV--FKLLPQLTYLDGYD 149 (149)
T ss_dssp HHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHH--HHHCTTCCEETTBC
T ss_pred hhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHH--HHHCCCcccccCCC
Confidence 8899999999999999883 33788999999999999999976544 22 37789999998864
No 122
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.69 E-value=3.5e-17 Score=146.79 Aligned_cols=138 Identities=15% Similarity=0.022 Sum_probs=110.1
Q ss_pred CcccEEEcCCCCCCCCCCCCCCCCCeEECCCCCCCCEEeCCCCcCccccC-cCccCCCCccE-EeCCCCccccCCCcccc
Q 019924 7 ATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIP-RKFVKSCNLTS-LNLNGNRLEGPLPPSLV 84 (334)
Q Consensus 7 ~~L~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~-L~L~~n~l~~~~p~~l~ 84 (334)
+++++|+|++|+|+.+++..|.+|..| ++|+|++|++.+.+| ..|.++++++. +.+++|+++...|..|.
T Consensus 30 ~~l~~L~Ls~N~i~~i~~~~f~~l~~L--------~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~ 101 (350)
T 4ay9_X 30 RNAIELRFVLTKLRVIQKGAFSGFGDL--------EKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQ 101 (350)
T ss_dssp TTCSEEEEESCCCSEECTTSSTTCTTC--------CEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBC
T ss_pred CCCCEEEccCCcCCCcCHHHHcCCCCC--------CEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhh
Confidence 579999999999999888778887766 999999999866554 57889988775 66677999988888999
Q ss_pred CCCCCCEEEccCCcCCcCCChhhhcCCCCCEEEeec-ccCcccCCCCCCCCCC-CCccEEEecCCccccccc
Q 019924 85 NCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRS-NRFWGPIGENTTIVPF-PSLRIIDLSHNEFTGVLL 154 (334)
Q Consensus 85 ~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~-N~l~~~~~~~~~~~~l-~~L~~L~Ls~N~l~~~~~ 154 (334)
++++|++|++++|++....+..+....++..|++.+ +++....+..+ ..+ ..++.|++++|+++.+.+
T Consensus 102 ~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f--~~~~~~l~~L~L~~N~i~~i~~ 171 (350)
T 4ay9_X 102 NLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSF--VGLSFESVILWLNKNGIQEIHN 171 (350)
T ss_dssp CCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSS--TTSBSSCEEEECCSSCCCEECT
T ss_pred hccccccccccccccccCCchhhcccchhhhhhhccccccccccccch--hhcchhhhhhccccccccCCCh
Confidence 999999999999999987776777777888999976 45543333333 444 468999999999986543
No 123
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.69 E-value=5.3e-18 Score=165.81 Aligned_cols=148 Identities=15% Similarity=0.103 Sum_probs=84.9
Q ss_pred CcccEEEcCCCCCCCCCCCCCCCCCeEECCCCCCCCEEeCCCCcCccccCcCccCCCCccEEeCCCCccccCCCccccCC
Q 019924 7 ATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNC 86 (334)
Q Consensus 7 ~~L~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l 86 (334)
+.++.|+|++|.+...+. ..++.++|+.| .+..++++.|.+. ..|..|..+..|+.|+|++|.+. .+|..+.++
T Consensus 173 ~~~~~l~L~~n~~~~~~~---~~l~~l~Ls~~-~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l 246 (727)
T 4b8c_D 173 PLTPKIELFANGKDEANQ---ALLQHKKLSQY-SIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKY 246 (727)
T ss_dssp ------------------------------------------------------CCCCCCEEECTTSCCS-CCCGGGGGC
T ss_pred CccceEEeeCCCCCcchh---hHhhcCccCcc-cccCcccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCC
Confidence 457788888888776433 22333444433 2356677777776 77889999999999999999998 778888899
Q ss_pred CCCCEEEccCCcCCcCCChhhhcCCCCCEEEeecccCcccCCCCCCCCCCCCccEEEecCCccccccchhhHHhHHhhhh
Q 019924 87 HHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMH 166 (334)
Q Consensus 87 ~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~ 166 (334)
++|++|+|++|.++ .+|..|+.+++|++|+|++|+|+ .+|..+ ..+++|++|+|++|.++. +|.. +..+++|..
T Consensus 247 ~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~--~~l~~L~~L~L~~N~l~~-lp~~-~~~l~~L~~ 320 (727)
T 4b8c_D 247 DFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAEL--GSCFQLKYFYFFDNMVTT-LPWE-FGNLCNLQF 320 (727)
T ss_dssp CSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSG--GGGTTCSEEECCSSCCCC-CCSS-TTSCTTCCC
T ss_pred CCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhh--cCCCCCCEEECCCCCCCc-cChh-hhcCCCccE
Confidence 99999999999999 58899999999999999999997 667765 889999999999999974 4444 444444433
No 124
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.69 E-value=3.4e-16 Score=126.39 Aligned_cols=105 Identities=18% Similarity=0.243 Sum_probs=68.2
Q ss_pred CEEeCCCCcCccccCcCccCCCCccEEeCCCCccccCCCccccCCCCCCEEEccCCcCCcCCChhhhcCCCCCEEEeecc
Q 019924 42 KVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSN 121 (334)
Q Consensus 42 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N 121 (334)
+.+++++|+++ .+|..+. ++|+.|++++|++++..+..+.++++|++|++++|++++..+..+..+++|++|++++|
T Consensus 10 ~~l~~~~~~l~-~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 86 (177)
T 2o6r_A 10 TEIRCNSKGLT-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN 86 (177)
T ss_dssp TEEECCSSCCS-SCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCCc-cCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence 56777777776 4444332 56777777777777555556677777777777777777655556667777777777777
Q ss_pred cCcccCCCCCCCCCCCCccEEEecCCcccc
Q 019924 122 RFWGPIGENTTIVPFPSLRIIDLSHNEFTG 151 (334)
Q Consensus 122 ~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~ 151 (334)
++++..+..+ ..+++|+.|++++|.+++
T Consensus 87 ~l~~~~~~~~--~~l~~L~~L~l~~N~l~~ 114 (177)
T 2o6r_A 87 KLQSLPNGVF--DKLTQLKELALDTNQLKS 114 (177)
T ss_dssp CCCCCCTTTT--TTCTTCCEEECCSSCCSC
T ss_pred CccccCHHHh--hCCcccCEEECcCCcceE
Confidence 7765444333 556666666666666654
No 125
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.69 E-value=3.6e-18 Score=162.24 Aligned_cols=109 Identities=28% Similarity=0.377 Sum_probs=97.2
Q ss_pred CCCCEEeCCCCcCccccCcCccCCCCccEEeCCCCccccCCCccccCCCCCCEEEccCCcCCcCCChhhhcCCCCCEEEe
Q 019924 39 LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLIL 118 (334)
Q Consensus 39 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L 118 (334)
..|++|++++|++++ +|. |+.+++|+.|++++|+++ .+|..+.++++|++|++++|++++ +| .++.+++|++|++
T Consensus 441 ~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~L 515 (567)
T 1dce_A 441 ADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLL 515 (567)
T ss_dssp TTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEEC
T ss_pred cCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEEC
Confidence 468899999999995 666 999999999999999999 789999999999999999999998 56 7899999999999
Q ss_pred ecccCcccC-CCCCCCCCCCCccEEEecCCccccccc
Q 019924 119 RSNRFWGPI-GENTTIVPFPSLRIIDLSHNEFTGVLL 154 (334)
Q Consensus 119 ~~N~l~~~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 154 (334)
++|++++.. |..+ ..+++|+.|++++|.+++.++
T Consensus 516 s~N~l~~~~~p~~l--~~l~~L~~L~L~~N~l~~~~~ 550 (567)
T 1dce_A 516 CNNRLQQSAAIQPL--VSCPRLVLLNLQGNSLCQEEG 550 (567)
T ss_dssp CSSCCCSSSTTGGG--GGCTTCCEEECTTSGGGGSSS
T ss_pred CCCCCCCCCCcHHH--hcCCCCCEEEecCCcCCCCcc
Confidence 999998776 6655 889999999999999987654
No 126
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.63 E-value=3.9e-16 Score=125.91 Aligned_cols=134 Identities=15% Similarity=0.192 Sum_probs=71.4
Q ss_pred ccCCCCccEEeCCCCccccCCCccccCCC-CCCEEEccCCcCCcCCChhhhcCCCCCEEEeecccCcccCCCCCCCCCCC
Q 019924 59 FVKSCNLTSLNLNGNRLEGPLPPSLVNCH-HLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFP 137 (334)
Q Consensus 59 ~~~l~~L~~L~L~~n~l~~~~p~~l~~l~-~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~ 137 (334)
+..+.+|+.|++++|+++ .+|. +..+. +|++|++++|.+++. ..+..+++|++|++++|++++..+.. +..++
T Consensus 15 ~~~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~--~~~l~ 88 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGL--DQALP 88 (176)
T ss_dssp EECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCH--HHHCT
T ss_pred cCCcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcch--hhcCC
Confidence 444555666666666655 2333 33332 566666666666553 34555566666666666654332221 14556
Q ss_pred CccEEEecCCccccccchhhHHhHHhhhhcCCcccccccccCCCCCCceeeEEEEEeccchhhhhhhhheeEEEccCccc
Q 019924 138 SLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKF 217 (334)
Q Consensus 138 ~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l 217 (334)
+|+.|++++|.+........ +..+++|+.|++++|.+
T Consensus 89 ~L~~L~L~~N~i~~~~~~~~-------------------------------------------l~~l~~L~~L~l~~N~i 125 (176)
T 1a9n_A 89 DLTELILTNNSLVELGDLDP-------------------------------------------LASLKSLTYLCILRNPV 125 (176)
T ss_dssp TCCEEECCSCCCCCGGGGGG-------------------------------------------GGGCTTCCEEECCSSGG
T ss_pred CCCEEECCCCcCCcchhhHh-------------------------------------------hhcCCCCCEEEecCCCC
Confidence 66666666666543211000 11145566677777766
Q ss_pred ccCCchh----hhCcCCCCeeeccCCccC
Q 019924 218 QGGIPEV----VGKLNLLKGLNISHNNLT 242 (334)
Q Consensus 218 ~~~~p~~----l~~l~~L~~L~Ls~N~l~ 242 (334)
+ .+|.. +..+++|+.||+++|.+.
T Consensus 126 ~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 126 T-NKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp G-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred C-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 6 44443 666777777777777654
No 127
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.63 E-value=2.3e-16 Score=127.24 Aligned_cols=135 Identities=19% Similarity=0.129 Sum_probs=106.8
Q ss_pred cCCCcccEEEcCCCCCCCCCCCCCCCCCeEECCCCCCCCEEeCCCCcCccccCcCccCCCCccEEeCCCCccccCCCccc
Q 019924 4 LGIATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSL 83 (334)
Q Consensus 4 ~~l~~L~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l 83 (334)
.++++|+.|++++|.++.++. +..+. ++|++|++++|++++. ..|..+++|++|++++|++++..+..+
T Consensus 16 ~~~~~L~~L~l~~n~l~~i~~--~~~~~-------~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~ 84 (176)
T 1a9n_A 16 TNAVRDRELDLRGYKIPVIEN--LGATL-------DQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLD 84 (176)
T ss_dssp ECTTSCEEEECTTSCCCSCCC--GGGGT-------TCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHH
T ss_pred CCcCCceEEEeeCCCCchhHH--hhhcC-------CCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchh
Confidence 357889999999999986532 11111 2458899999999865 678999999999999999996655556
Q ss_pred cCCCCCCEEEccCCcCCcCCCh--hhhcCCCCCEEEeecccCcccCCCC--CCCCCCCCccEEEecCCcccc
Q 019924 84 VNCHHLEVLNVGNNQINDNFPN--WLEILPELQVLILRSNRFWGPIGEN--TTIVPFPSLRIIDLSHNEFTG 151 (334)
Q Consensus 84 ~~l~~L~~L~Ls~N~l~~~~~~--~l~~l~~L~~L~L~~N~l~~~~~~~--~~~~~l~~L~~L~Ls~N~l~~ 151 (334)
..+++|++|++++|+++. +|. .+..+++|++|++++|+++. ++.. ..+..+++|+.||++.|....
T Consensus 85 ~~l~~L~~L~L~~N~i~~-~~~~~~l~~l~~L~~L~l~~N~i~~-~~~~~~~~~~~l~~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 85 QALPDLTELILTNNSLVE-LGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLDFQKVKLKE 154 (176)
T ss_dssp HHCTTCCEEECCSCCCCC-GGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred hcCCCCCEEECCCCcCCc-chhhHhhhcCCCCCEEEecCCCCCC-cHhHHHHHHHHCCccceeCCCcCCHHH
Confidence 899999999999999976 555 78899999999999999963 3432 013778999999999998764
No 128
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.62 E-value=2.9e-18 Score=141.18 Aligned_cols=149 Identities=23% Similarity=0.265 Sum_probs=103.4
Q ss_pred CEEeCCCCcCccccCc------CccCCCCccEEeCCCCccccCCCccccCCCCCCEEEccCCcCCcCCChhhhcCCCCCE
Q 019924 42 KVLDMRMNNFNGKIPR------KFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQV 115 (334)
Q Consensus 42 ~~L~Ls~N~l~~~~p~------~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~ 115 (334)
+.++++.+.+++..|. .|..+++|++|++++|++++ +| .+.++++|++|++++|.++. +|..+..+++|++
T Consensus 21 ~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~~-l~~~~~~~~~L~~ 97 (198)
T 1ds9_A 21 VATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIKK-IENLDAVADTLEE 97 (198)
T ss_dssp CCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEECS-CSSHHHHHHHCSE
T ss_pred cCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCccc-ccchhhcCCcCCE
Confidence 4455555555555444 77788888888888888874 56 77788888888888888875 5667777788888
Q ss_pred EEeecccCcccCCCCCCCCCCCCccEEEecCCccccccchhhHHhHHhhhhcCCcccccccccCCCCCCceeeEEEEEec
Q 019924 116 LILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKG 195 (334)
Q Consensus 116 L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 195 (334)
|++++|++++. + . +..+++|+.|++++|++++......
T Consensus 98 L~L~~N~l~~l-~-~--~~~l~~L~~L~l~~N~i~~~~~~~~-------------------------------------- 135 (198)
T 1ds9_A 98 LWISYNQIASL-S-G--IEKLVNLRVLYMSNNKITNWGEIDK-------------------------------------- 135 (198)
T ss_dssp EEEEEEECCCH-H-H--HHHHHHSSEEEESEEECCCHHHHHH--------------------------------------
T ss_pred EECcCCcCCcC-C-c--cccCCCCCEEECCCCcCCchhHHHH--------------------------------------
Confidence 88888888653 3 2 3667788888888888765322111
Q ss_pred cchhhhhhhhheeEEEccCcccccCCch----------hhhCcCCCCeeeccCCccC
Q 019924 196 IDIKMERILTIFMTIDLSSNKFQGGIPE----------VVGKLNLLKGLNISHNNLT 242 (334)
Q Consensus 196 ~~~~~~~~l~~L~~L~Ls~N~l~~~~p~----------~l~~l~~L~~L~Ls~N~l~ 242 (334)
+..+++|++|++++|.+++.+|. .+..+++|+.|| +|+++
T Consensus 136 -----l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 136 -----LAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp -----HTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred -----HhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence 11256788888888888766554 267788888876 56554
No 129
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.62 E-value=4.7e-15 Score=118.83 Aligned_cols=107 Identities=20% Similarity=0.171 Sum_probs=84.3
Q ss_pred CEEeCCCCcCccccCcCccCCCCccEEeCCCCccccCCCccccCCCCCCEEEccCCcCCcCCChhhhcCCCCCEEEeecc
Q 019924 42 KVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSN 121 (334)
Q Consensus 42 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N 121 (334)
+++++++|+++ .+|..+. ++|++|++++|+|++..|..|.++++|++|++++|++++..+..|..+++|++|+|++|
T Consensus 12 ~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 12 TTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 67888888887 4665553 67888888888888777778888888888888888888877777788888888888888
Q ss_pred cCcccCCCCCCCCCCCCccEEEecCCcccccc
Q 019924 122 RFWGPIGENTTIVPFPSLRIIDLSHNEFTGVL 153 (334)
Q Consensus 122 ~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 153 (334)
++++..+..+ ..+++|+.|++++|.+....
T Consensus 89 ~l~~~~~~~~--~~l~~L~~L~L~~N~~~c~c 118 (170)
T 3g39_A 89 QLKSIPRGAF--DNLKSLTHIWLLNNPWDCAC 118 (170)
T ss_dssp CCCCCCTTTT--TTCTTCCEEECCSSCBCTTB
T ss_pred ccCEeCHHHh--cCCCCCCEEEeCCCCCCCCc
Confidence 8876555444 77888888888888887553
No 130
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.62 E-value=7.3e-15 Score=117.72 Aligned_cols=107 Identities=23% Similarity=0.198 Sum_probs=94.4
Q ss_pred cccEEEcCCCCCCCCCCCCCCCCCeEECCCCCCCCEEeCCCCcCccccCcCccCCCCccEEeCCCCccccCCCccccCCC
Q 019924 8 TLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCH 87 (334)
Q Consensus 8 ~L~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~ 87 (334)
..+.+++++|.++.++....+ +|++|++++|+|++..|..|..+++|++|++++|+|++..+..|.+++
T Consensus 10 ~~~~l~~s~n~l~~ip~~~~~-----------~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~ 78 (170)
T 3g39_A 10 SGTTVDCSGKSLASVPTGIPT-----------TTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLT 78 (170)
T ss_dssp ETTEEECTTSCCSSCCSCCCT-----------TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCT
T ss_pred CCCEEEeCCCCcCccCccCCC-----------CCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCC
Confidence 357899999999987654333 338899999999988899999999999999999999977777889999
Q ss_pred CCCEEEccCCcCCcCCChhhhcCCCCCEEEeecccCcc
Q 019924 88 HLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWG 125 (334)
Q Consensus 88 ~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~ 125 (334)
+|++|++++|++++..+..|..+++|++|++++|+++.
T Consensus 79 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 116 (170)
T 3g39_A 79 QLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDC 116 (170)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCT
T ss_pred CCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCC
Confidence 99999999999999777789999999999999999853
No 131
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.60 E-value=1.3e-14 Score=116.67 Aligned_cols=107 Identities=18% Similarity=0.156 Sum_probs=86.9
Q ss_pred CEEeCCCCcCccccCcCccCCCCccEEeCCCCccccCCCccccCCCCCCEEEccCCcCCcCCChhhhcCCCCCEEEeecc
Q 019924 42 KVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSN 121 (334)
Q Consensus 42 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N 121 (334)
+.+++++|+++ .+|..+. ++|+.|++++|++++..|..|.++++|++|+|++|++++..+..|..+++|++|+|++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 67888888887 6666554 78889999999998777888888999999999999998866667788899999999999
Q ss_pred cCcccCCCCCCCCCCCCccEEEecCCcccccc
Q 019924 122 RFWGPIGENTTIVPFPSLRIIDLSHNEFTGVL 153 (334)
Q Consensus 122 ~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 153 (334)
++++..+..+ ..+++|+.|++++|.+....
T Consensus 92 ~l~~l~~~~~--~~l~~L~~L~L~~N~~~c~~ 121 (174)
T 2r9u_A 92 HLKSIPRGAF--DNLKSLTHIYLYNNPWDCEC 121 (174)
T ss_dssp CCCCCCTTTT--TTCTTCSEEECCSSCBCTTB
T ss_pred ccceeCHHHh--ccccCCCEEEeCCCCccccc
Confidence 9875554434 78889999999999887543
No 132
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.59 E-value=1.4e-14 Score=116.54 Aligned_cols=105 Identities=20% Similarity=0.185 Sum_probs=92.2
Q ss_pred ccEEEcCCCCCCCCCCCCCCCCCeEECCCCCCCCEEeCCCCcCccccCcCccCCCCccEEeCCCCccccCCCccccCCCC
Q 019924 9 LYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHH 88 (334)
Q Consensus 9 L~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~ 88 (334)
-+.+++++|.++.++..-.+ +|++|++++|+|++..|..|..+++|++|+|++|+|++..+..|.++++
T Consensus 14 ~~~l~~~~n~l~~iP~~~~~-----------~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~ 82 (174)
T 2r9u_A 14 QTLVNCQNIRLASVPAGIPT-----------DKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQ 82 (174)
T ss_dssp SSEEECCSSCCSSCCSCCCT-----------TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred CcEEEeCCCCCCccCCCcCC-----------CCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcch
Confidence 36899999999877653333 3388999999999888999999999999999999999766667899999
Q ss_pred CCEEEccCCcCCcCCChhhhcCCCCCEEEeecccCc
Q 019924 89 LEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFW 124 (334)
Q Consensus 89 L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~ 124 (334)
|++|++++|++++..+..|..+++|++|++++|++.
T Consensus 83 L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 83 LTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred hhEEECCCCccceeCHHHhccccCCCEEEeCCCCcc
Confidence 999999999999977777999999999999999985
No 133
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.59 E-value=3.4e-17 Score=156.84 Aligned_cols=115 Identities=17% Similarity=0.261 Sum_probs=84.3
Q ss_pred CCCcccEEEcCCCCCCCCCC----CCCCC-CCeEECCCC---------------CCCCEEeCCCCcCccc----cCcCcc
Q 019924 5 GIATLYYLDLSNNFLTNIEY----FPPTN-MTQLNFDSN---------------LTHKVLDMRMNNFNGK----IPRKFV 60 (334)
Q Consensus 5 ~l~~L~~L~Ls~n~l~~~~~----~~~~~-L~~L~l~~n---------------~~L~~L~Ls~N~l~~~----~p~~~~ 60 (334)
.+++|++|+|++|.+++... ..++. |++|++++| ++|++|+|++|.+++. ++..+.
T Consensus 110 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~ 189 (592)
T 3ogk_B 110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQ 189 (592)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHH
T ss_pred hCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHh
Confidence 56888888888887765433 11333 888888877 6889999999887654 333455
Q ss_pred CCCCccEEeCCCCcccc----CCCccccCCCCCCEEEccCCcCCcCCChhhhcCCCCCEEEeec
Q 019924 61 KSCNLTSLNLNGNRLEG----PLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRS 120 (334)
Q Consensus 61 ~l~~L~~L~L~~n~l~~----~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~ 120 (334)
.+++|++|++++|.+++ .++..+.++++|++|++++|.+.+ .|..+..+++|++|+++.
T Consensus 190 ~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~ 252 (592)
T 3ogk_B 190 HNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGS 252 (592)
T ss_dssp HCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECB
T ss_pred cCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccc
Confidence 67888888998888862 234445678889999998888876 567777778888888764
No 134
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.58 E-value=4.6e-15 Score=140.92 Aligned_cols=125 Identities=23% Similarity=0.234 Sum_probs=106.2
Q ss_pred CcccEEEcCCCCCCCCCCCCCCCCCeEECCCCCCCCEEeCCCCcCccccCcCccCCCCccEEeCCCCccccCCCccccCC
Q 019924 7 ATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNC 86 (334)
Q Consensus 7 ~~L~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l 86 (334)
..|+.|++++|.+++++. +..+. +|++|+|++|+|+ .+|..|+.+++|+.|+|++|++++ +| .+.++
T Consensus 441 ~~L~~L~Ls~n~l~~lp~--~~~l~--------~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l 507 (567)
T 1dce_A 441 ADVRVLHLAHKDLTVLCH--LEQLL--------LVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANL 507 (567)
T ss_dssp TTCSEEECTTSCCSSCCC--GGGGT--------TCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTC
T ss_pred cCceEEEecCCCCCCCcC--ccccc--------cCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCC
Confidence 368899999999998643 44444 4499999999999 889999999999999999999995 67 89999
Q ss_pred CCCCEEEccCCcCCcCC-ChhhhcCCCCCEEEeecccCcccCCCCCC-CCCCCCccEEEe
Q 019924 87 HHLEVLNVGNNQINDNF-PNWLEILPELQVLILRSNRFWGPIGENTT-IVPFPSLRIIDL 144 (334)
Q Consensus 87 ~~L~~L~Ls~N~l~~~~-~~~l~~l~~L~~L~L~~N~l~~~~~~~~~-~~~l~~L~~L~L 144 (334)
++|++|++++|++++.. |..++.+++|+.|++++|++++..+.... +..+++|+.|++
T Consensus 508 ~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 508 PRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp SSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 99999999999999976 99999999999999999999876654321 234789998864
No 135
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.58 E-value=7.3e-17 Score=154.55 Aligned_cols=217 Identities=17% Similarity=0.080 Sum_probs=109.2
Q ss_pred CCCcccEEEcCCCCCCCCCC--CCCCCCCeEECCCC--------------CCCCEEeCCCCcCc-cccCcCccCCCCccE
Q 019924 5 GIATLYYLDLSNNFLTNIEY--FPPTNMTQLNFDSN--------------LTHKVLDMRMNNFN-GKIPRKFVKSCNLTS 67 (334)
Q Consensus 5 ~l~~L~~L~Ls~n~l~~~~~--~~~~~L~~L~l~~n--------------~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~ 67 (334)
.+++|+.|+++++.....+. ..+++|++|++++| ++|++|+++ +.+. +.++..+..+++|++
T Consensus 268 ~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~ 346 (592)
T 3ogk_B 268 FPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKR 346 (592)
T ss_dssp CCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCE
T ss_pred ccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCE
Confidence 34555556655543322222 33445555555554 456666666 3333 222333344566666
Q ss_pred EeCCC-----------CccccC-CCccccCCCCCCEEEccCCcCCcCCChhhhc-CCCCCEEEee----cccCcccCCCC
Q 019924 68 LNLNG-----------NRLEGP-LPPSLVNCHHLEVLNVGNNQINDNFPNWLEI-LPELQVLILR----SNRFWGPIGEN 130 (334)
Q Consensus 68 L~L~~-----------n~l~~~-~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~-l~~L~~L~L~----~N~l~~~~~~~ 130 (334)
|++++ |.++.. ++.....+++|++|+++.|.+++..+..+.. +++|++|+++ .|.+++...+.
T Consensus 347 L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~ 426 (592)
T 3ogk_B 347 LRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDN 426 (592)
T ss_dssp EEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHH
T ss_pred EEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHH
Confidence 66662 344322 1122334566666666666665544444443 6666666664 34443211000
Q ss_pred ---CCCCCCCCccEEEecCCc--cccccchhhHHhHHhhhhcCCcccccccccCCCCCCceeeEEEEEeccch----hhh
Q 019924 131 ---TTIVPFPSLRIIDLSHNE--FTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDI----KME 201 (334)
Q Consensus 131 ---~~~~~l~~L~~L~Ls~N~--l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----~~~ 201 (334)
..+..+++|+.|++++|. +++.........+++|+.++ +..+.+.. ...
T Consensus 427 ~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~----------------------L~~n~l~~~~~~~~~ 484 (592)
T 3ogk_B 427 GVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWML----------------------LGYVGESDEGLMEFS 484 (592)
T ss_dssp HHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEE----------------------ECSCCSSHHHHHHHH
T ss_pred HHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEee----------------------ccCCCCCHHHHHHHH
Confidence 001345666666665432 33222211111112121111 11111111 122
Q ss_pred hhhhheeEEEccCcccccC-CchhhhCcCCCCeeeccCCccCCC
Q 019924 202 RILTIFMTIDLSSNKFQGG-IPEVVGKLNLLKGLNISHNNLTGL 244 (334)
Q Consensus 202 ~~l~~L~~L~Ls~N~l~~~-~p~~l~~l~~L~~L~Ls~N~l~~l 244 (334)
..+++|+.|++++|.+++. ++..+..+++|+.|++++|++++.
T Consensus 485 ~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~ 528 (592)
T 3ogk_B 485 RGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMT 528 (592)
T ss_dssp TCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTT
T ss_pred hcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHH
Confidence 3468899999999998755 444556799999999999998864
No 136
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.55 E-value=1.8e-14 Score=127.93 Aligned_cols=205 Identities=15% Similarity=0.070 Sum_probs=128.1
Q ss_pred CCcccEEEcCCCCCC--CCCCCCCCCCCeE----------ECCC--------CCCCCEEeCCCCcCccccCcCccCCCCc
Q 019924 6 IATLYYLDLSNNFLT--NIEYFPPTNMTQL----------NFDS--------NLTHKVLDMRMNNFNGKIPRKFVKSCNL 65 (334)
Q Consensus 6 l~~L~~L~Ls~n~l~--~~~~~~~~~L~~L----------~l~~--------n~~L~~L~Ls~N~l~~~~p~~~~~l~~L 65 (334)
+++|+.|||++|++. ......++.+..+ -+.+ +++|+.+++.+ .++...+.+|.++++|
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L 126 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNL 126 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTC
T ss_pred hccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCccc
Confidence 688999999999998 2222222221111 1223 56778899988 8887777889999999
Q ss_pred cEEeCCCCccccCCCccccCCCCCCEEEccCCcC----CcCC----------------------Ch--------------
Q 019924 66 TSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQI----NDNF----------------------PN-------------- 105 (334)
Q Consensus 66 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l----~~~~----------------------~~-------------- 105 (334)
+.+++++|.++...+.+|.++.++..+....+.. .... +.
T Consensus 127 ~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~ 206 (329)
T 3sb4_A 127 KICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINF 206 (329)
T ss_dssp CEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSE
T ss_pred ceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCccccce
Confidence 9999999988767777888877777776655221 0000 00
Q ss_pred -------------hh-hcCCCCCEEEeecccCcccCCCCCCCCCCCCccEEEecCCccccccchhhHHhHHhhh-hcCCc
Q 019924 106 -------------WL-EILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMM-HGNNI 170 (334)
Q Consensus 106 -------------~l-~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~-~~~~~ 170 (334)
.+ ..+++|+.+++++|+++...... |..+++|+.+++.+| +.. ++...|.++.+|+ .+...
T Consensus 207 l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~a--F~~~~~L~~l~l~~n-i~~-I~~~aF~~~~~L~~~l~l~ 282 (329)
T 3sb4_A 207 LTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFT--FAQKKYLLKIKLPHN-LKT-IGQRVFSNCGRLAGTLELP 282 (329)
T ss_dssp EEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTT--TTTCTTCCEEECCTT-CCE-ECTTTTTTCTTCCEEEEEC
T ss_pred EEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhh--hhCCCCCCEEECCcc-cce-ehHHHhhCChhccEEEEEc
Confidence 00 13789999999999886544443 488999999999998 553 3434455544433 22110
Q ss_pred ccccccccCCCCCCceeeEEEEEeccchhhhhhhhheeEEEccCcccccCCchhhhCcCCCCeee
Q 019924 171 SVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLN 235 (334)
Q Consensus 171 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 235 (334)
. .+..++...+..+++|+.+++++|.++...+.+|.++++|+.+.
T Consensus 283 ~--------------------~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 283 A--------------------SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp T--------------------TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred c--------------------cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence 0 12233444455566666666666666655555666666666654
No 137
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.49 E-value=1.3e-15 Score=145.75 Aligned_cols=64 Identities=19% Similarity=0.188 Sum_probs=38.7
Q ss_pred CCCcccEEEcCCCCCCCCCC-------CCCCCCCeEECCCC----------------CCCCEEeCCCC-cCccccCcCcc
Q 019924 5 GIATLYYLDLSNNFLTNIEY-------FPPTNMTQLNFDSN----------------LTHKVLDMRMN-NFNGKIPRKFV 60 (334)
Q Consensus 5 ~l~~L~~L~Ls~n~l~~~~~-------~~~~~L~~L~l~~n----------------~~L~~L~Ls~N-~l~~~~p~~~~ 60 (334)
++++|++|++++|.+++..+ ..+++|+.|++++| ++|++|++++| .++ .+|..+.
T Consensus 154 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~-~l~~~~~ 232 (594)
T 2p1m_B 154 TCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLE-KLATLLQ 232 (594)
T ss_dssp HCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHH-HHHHHHH
T ss_pred hCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHH-HHHHHHh
Confidence 46788888888887665432 35667777777766 57777777776 222 2333333
Q ss_pred CCCCccEEe
Q 019924 61 KSCNLTSLN 69 (334)
Q Consensus 61 ~l~~L~~L~ 69 (334)
.+++|+.|+
T Consensus 233 ~~~~L~~L~ 241 (594)
T 2p1m_B 233 RAPQLEELG 241 (594)
T ss_dssp HCTTCSEEE
T ss_pred cCCcceEcc
Confidence 344444444
No 138
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.47 E-value=5.1e-16 Score=127.69 Aligned_cols=136 Identities=21% Similarity=0.250 Sum_probs=109.7
Q ss_pred ccCCCCccEEeCCCCccccCCCc------cccCCCCCCEEEccCCcCCcCCChhhhcCCCCCEEEeecccCcccCCCCCC
Q 019924 59 FVKSCNLTSLNLNGNRLEGPLPP------SLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTT 132 (334)
Q Consensus 59 ~~~l~~L~~L~L~~n~l~~~~p~------~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~ 132 (334)
+.....++.++++.+.+++..|. .+..+++|++|++++|.+++ +| .+..+++|++|++++|+++ .++..+
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~- 89 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLD- 89 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHH-
T ss_pred HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchh-
Confidence 44556777777888888777666 89999999999999999998 66 8889999999999999996 455433
Q ss_pred CCCCCCccEEEecCCccccccchhhHHhHHhhhhcCCcccccccccCCCCCCceeeEEEEEeccchhhhhhhhheeEEEc
Q 019924 133 IVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDL 212 (334)
Q Consensus 133 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~L 212 (334)
..+++|+.|++++|++++. + . +. .+++|+.|++
T Consensus 90 -~~~~~L~~L~L~~N~l~~l-~-~-~~-------------------------------------------~l~~L~~L~l 122 (198)
T 1ds9_A 90 -AVADTLEELWISYNQIASL-S-G-IE-------------------------------------------KLVNLRVLYM 122 (198)
T ss_dssp -HHHHHCSEEEEEEEECCCH-H-H-HH-------------------------------------------HHHHSSEEEE
T ss_pred -hcCCcCCEEECcCCcCCcC-C-c-cc-------------------------------------------cCCCCCEEEC
Confidence 5568999999999999863 2 1 22 2678899999
Q ss_pred cCcccccCCc-hhhhCcCCCCeeeccCCccCCCC
Q 019924 213 SSNKFQGGIP-EVVGKLNLLKGLNISHNNLTGLC 245 (334)
Q Consensus 213 s~N~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~l~ 245 (334)
++|++++..+ ..+..+++|+.|++++|++++.+
T Consensus 123 ~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~ 156 (198)
T 1ds9_A 123 SNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDY 156 (198)
T ss_dssp SEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHH
T ss_pred CCCcCCchhHHHHHhcCCCCCEEEecCCcccccc
Confidence 9999985332 57899999999999999997754
No 139
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.46 E-value=1.7e-15 Score=136.61 Aligned_cols=165 Identities=13% Similarity=0.025 Sum_probs=113.6
Q ss_pred CCCCEEeCCCCcCccccCcCccC-----CCCccEEeCCCCccccCCCccc-cCCCCCCEEEccCCcCCcCCChhhh----
Q 019924 39 LTHKVLDMRMNNFNGKIPRKFVK-----SCNLTSLNLNGNRLEGPLPPSL-VNCHHLEVLNVGNNQINDNFPNWLE---- 108 (334)
Q Consensus 39 ~~L~~L~Ls~N~l~~~~p~~~~~-----l~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~Ls~N~l~~~~~~~l~---- 108 (334)
+.|++|++++|.++......+.. .++|+.|+|++|.++......+ ..+++|++|++++|.++......+.
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 67899999999998543333332 3689999999999874322222 3356899999999999765444442
Q ss_pred -cCCCCCEEEeecccCcccCCCCC--CCCCCCCccEEEecCCccccccchhhHHhHHhhhhcCCcccccccccCCCCCCc
Q 019924 109 -ILPELQVLILRSNRFWGPIGENT--TIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNY 185 (334)
Q Consensus 109 -~l~~L~~L~L~~N~l~~~~~~~~--~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~ 185 (334)
..++|++|+|++|.++......+ .+..+++|++|+|++|.+++.........
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~------------------------- 206 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQ------------------------- 206 (372)
T ss_dssp STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHH-------------------------
T ss_pred hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHH-------------------------
Confidence 46889999999999854221111 12467889999999999875322111111
Q ss_pred eeeEEEEEeccchhhhhhhhheeEEEccCcccccC----CchhhhCcCCCCeeeccCCccCC
Q 019924 186 YESIILTIKGIDIKMERILTIFMTIDLSSNKFQGG----IPEVVGKLNLLKGLNISHNNLTG 243 (334)
Q Consensus 186 l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~ 243 (334)
+...++|++|+|++|.|++. ++..+...++|+.|+|++|+|++
T Consensus 207 ---------------L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 207 ---------------LDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp ---------------GGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCH
T ss_pred ---------------HhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCH
Confidence 11245789999999999854 34455667899999999999874
No 140
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.45 E-value=3.5e-15 Score=142.89 Aligned_cols=40 Identities=13% Similarity=0.137 Sum_probs=32.0
Q ss_pred hhhheeEEEccCcccccCCch-hhhCcCCCCeeeccCCccC
Q 019924 203 ILTIFMTIDLSSNKFQGGIPE-VVGKLNLLKGLNISHNNLT 242 (334)
Q Consensus 203 ~l~~L~~L~Ls~N~l~~~~p~-~l~~l~~L~~L~Ls~N~l~ 242 (334)
.+++|+.|+|++|.+++..+. ....+++|+.|++++|+++
T Consensus 479 ~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 519 (594)
T 2p1m_B 479 GCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVS 519 (594)
T ss_dssp HCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCB
T ss_pred cCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCC
Confidence 368899999999999755444 3456899999999999885
No 141
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.44 E-value=5.9e-13 Score=118.95 Aligned_cols=107 Identities=18% Similarity=0.130 Sum_probs=74.5
Q ss_pred EEeCCCC-cCccccCcCccCCCCccEEeCCC-CccccCCCccccCCCCCCEEEccCCcCCcCCChhhhcCCCCCEEEeec
Q 019924 43 VLDMRMN-NFNGKIPRKFVKSCNLTSLNLNG-NRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRS 120 (334)
Q Consensus 43 ~L~Ls~N-~l~~~~p~~~~~l~~L~~L~L~~-n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~ 120 (334)
.++++++ +++ .+|. +..+++|+.|+|++ |++++..+..|.++++|++|+|++|+|++..|..|..+++|++|+|++
T Consensus 12 ~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 4566766 676 4666 77777777777775 777766666777777777777777777777777777777777777777
Q ss_pred ccCcccCCCCCCCCCCCCccEEEecCCccccccc
Q 019924 121 NRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLL 154 (334)
Q Consensus 121 N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 154 (334)
|+|++..+..+ ..++ |+.|++++|.+...-.
T Consensus 90 N~l~~~~~~~~--~~~~-L~~l~l~~N~~~c~c~ 120 (347)
T 2ifg_A 90 NALESLSWKTV--QGLS-LQELVLSGNPLHCSCA 120 (347)
T ss_dssp SCCSCCCSTTT--CSCC-CCEEECCSSCCCCCGG
T ss_pred CccceeCHHHc--ccCC-ceEEEeeCCCccCCCc
Confidence 77765444433 3333 7788888877765433
No 142
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.43 E-value=9e-16 Score=138.40 Aligned_cols=191 Identities=12% Similarity=0.038 Sum_probs=121.6
Q ss_pred CCcccEEEcCCCCCCCCCCCCCCCCCeEECCCCCCCCEEeCCCCcCccccCcCc-cCCCCccEEeCCCCccccCCCccc-
Q 019924 6 IATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKF-VKSCNLTSLNLNGNRLEGPLPPSL- 83 (334)
Q Consensus 6 l~~L~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n~~L~~L~Ls~N~l~~~~p~~~-~~l~~L~~L~L~~n~l~~~~p~~l- 83 (334)
+++|+.|++++|.++......+... -...+++|++|+|++|.++......+ ..+.+|+.|+|++|+++......+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~---L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~ 147 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAV---LGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLR 147 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHH---HSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHH---HhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHH
Confidence 3678999999999875432111000 00111345889999999875433333 345689999999999975433333
Q ss_pred ----cCCCCCCEEEccCCcCCcC----CChhhhcCCCCCEEEeecccCcccC----CCCCCCCCCCCccEEEecCCcccc
Q 019924 84 ----VNCHHLEVLNVGNNQINDN----FPNWLEILPELQVLILRSNRFWGPI----GENTTIVPFPSLRIIDLSHNEFTG 151 (334)
Q Consensus 84 ----~~l~~L~~L~Ls~N~l~~~----~~~~l~~l~~L~~L~L~~N~l~~~~----~~~~~~~~l~~L~~L~Ls~N~l~~ 151 (334)
...++|++|++++|.++.. ++..+..+++|++|+|++|.+++.. +.. +...++|+.|++++|.+++
T Consensus 148 ~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~--L~~~~~L~~L~Ls~N~i~~ 225 (372)
T 3un9_A 148 DLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQ--LDRNRQLQELNVAYNGAGD 225 (372)
T ss_dssp HHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHH--GGGCSCCCEEECCSSCCCH
T ss_pred HHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHH--HhcCCCcCeEECCCCCCCH
Confidence 3468899999999998653 3344567899999999999986432 222 2556789999999999875
Q ss_pred ccchhhHHhHHhhhhcCCcccccccccCCCCCCceeeEEEEEeccchhhhhhhhheeEEEccCcccccCCchhhhCcCC-
Q 019924 152 VLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNL- 230 (334)
Q Consensus 152 ~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~- 230 (334)
.........+ ...++|++|||++|.|++.....+..+..
T Consensus 226 ~g~~~l~~~L----------------------------------------~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~ 265 (372)
T 3un9_A 226 TAALALARAA----------------------------------------REHPSLELLHLYFNELSSEGRQVLRDLGGA 265 (372)
T ss_dssp HHHHHHHHHH----------------------------------------HHCSSCCEEECTTSSCCHHHHHHHHHCC--
T ss_pred HHHHHHHHHH----------------------------------------HhCCCCCEEeccCCCCCHHHHHHHHHHhcC
Confidence 4322211111 12467899999999998665555544321
Q ss_pred ----CCeee--ccCCcc
Q 019924 231 ----LKGLN--ISHNNL 241 (334)
Q Consensus 231 ----L~~L~--Ls~N~l 241 (334)
|+.+. +..|.+
T Consensus 266 ~~~~L~~l~~ll~~~~~ 282 (372)
T 3un9_A 266 AEGGARVVVSLTEGTAV 282 (372)
T ss_dssp ----CEEECCCC----C
T ss_pred CCccchhhHhhhcCCcc
Confidence 55555 555544
No 143
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.41 E-value=7.4e-13 Score=118.30 Aligned_cols=104 Identities=18% Similarity=0.126 Sum_probs=91.5
Q ss_pred cEEEcCCC-CCCCCCCCCCCCCCeEECCCCCCCCEEeCCC-CcCccccCcCccCCCCccEEeCCCCccccCCCccccCCC
Q 019924 10 YYLDLSNN-FLTNIEYFPPTNMTQLNFDSNLTHKVLDMRM-NNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCH 87 (334)
Q Consensus 10 ~~L~Ls~n-~l~~~~~~~~~~L~~L~l~~n~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~ 87 (334)
..++++++ .+++++. +..++.| ++|+|++ |+|++..+..|.++++|+.|+|++|+|++..|..|.+++
T Consensus 11 ~~v~~~~~n~l~~ip~--l~~~~~L--------~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~ 80 (347)
T 2ifg_A 11 SGLRCTRDGALDSLHH--LPGAENL--------TELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTP 80 (347)
T ss_dssp SCEECCSSCCCTTTTT--SCSCSCC--------SEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCS
T ss_pred CEEEcCCCCCCCccCC--CCCCCCe--------eEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCc
Confidence 35799998 8988665 6666555 9999996 999988889999999999999999999998999999999
Q ss_pred CCCEEEccCCcCCcCCChhhhcCCCCCEEEeecccCc
Q 019924 88 HLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFW 124 (334)
Q Consensus 88 ~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~ 124 (334)
+|++|+|++|+|++..+..+..++ |+.|+|.+|.+.
T Consensus 81 ~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 81 RLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp CCCEEECCSSCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred CCCEEeCCCCccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 999999999999997777776666 999999999985
No 144
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.30 E-value=1.8e-11 Score=108.47 Aligned_cols=100 Identities=13% Similarity=-0.013 Sum_probs=81.0
Q ss_pred CCCccEEeCCCCccccCCCccccCCCCCCEEEccCCcCCcCCChhhhcCCCCC-EEEeecccCcccCCCCCCCCCCCCcc
Q 019924 62 SCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQ-VLILRSNRFWGPIGENTTIVPFPSLR 140 (334)
Q Consensus 62 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~-~L~L~~N~l~~~~~~~~~~~~l~~L~ 140 (334)
+++|+.+++++|+++...+.+|.++++|+.+++.+| ++...+.+|.++++|+ .+++.+ .++...+.. |.++++|+
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~a--F~~c~~L~ 300 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGA--FMGCDNLR 300 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTT--TTTCTTEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhh--hhCCccCC
Confidence 678999999999998777788999999999999998 8887788999999999 999988 665444444 48899999
Q ss_pred EEEecCCccccccchhhHHhHHhhhh
Q 019924 141 IIDLSHNEFTGVLLTGYLDNFKAMMH 166 (334)
Q Consensus 141 ~L~Ls~N~l~~~~~~~~~~~l~~L~~ 166 (334)
.++++.|.++.... ..|.++.+|+.
T Consensus 301 ~l~l~~n~i~~I~~-~aF~~~~~L~~ 325 (329)
T 3sb4_A 301 YVLATGDKITTLGD-ELFGNGVPSKL 325 (329)
T ss_dssp EEEECSSCCCEECT-TTTCTTCCCCE
T ss_pred EEEeCCCccCccch-hhhcCCcchhh
Confidence 99999999886544 44666666544
No 145
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.28 E-value=6.2e-11 Score=107.74 Aligned_cols=77 Identities=9% Similarity=0.074 Sum_probs=37.6
Q ss_pred CCEEeCCCCcCccccCcCccCCCCccEEeCCCCccccCCCccccCCCCCCEEEccCCcCCcCCChhhhcCCCCCEEEeec
Q 019924 41 HKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRS 120 (334)
Q Consensus 41 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~ 120 (334)
|+.+.+.. .++...+..|.++.+|+.+++++|+++......|. +.+|+.+.+..+ ++.....+|..+++|+.+++..
T Consensus 159 L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~ 235 (401)
T 4fdw_A 159 VQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPE 235 (401)
T ss_dssp CCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCT
T ss_pred ceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCC
Confidence 45555543 44434445555555555555555555533333333 345555555432 4444444555555555555544
No 146
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.21 E-value=1.5e-10 Score=105.22 Aligned_cols=185 Identities=10% Similarity=0.100 Sum_probs=133.8
Q ss_pred cccEEEcCCCCCCCCCC---CCCCCCCeEECCCC------------CCCCEEeCCCCcCccccCcCccCCCCccEEeCCC
Q 019924 8 TLYYLDLSNNFLTNIEY---FPPTNMTQLNFDSN------------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNG 72 (334)
Q Consensus 8 ~L~~L~Ls~n~l~~~~~---~~~~~L~~L~l~~n------------~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~ 72 (334)
+|+.+++.+ .++.+.. ..+.+|+.+++++| ..|+.+.+..+ ++......|.++.+|+.+++..
T Consensus 158 ~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~ 235 (401)
T 4fdw_A 158 TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPE 235 (401)
T ss_dssp CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCT
T ss_pred CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEeecccCEEEeCCc-hheehhhHhhCCCCCCEEecCC
Confidence 466666665 4554444 34556666666654 56788888844 7767778999999999999987
Q ss_pred CccccCCCccccCCCCCCEEEccCCcCCcCCChhhhcCCCCCEEEeecccCcc----cCCCCCCCCCCCCccEEEecCCc
Q 019924 73 NRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWG----PIGENTTIVPFPSLRIIDLSHNE 148 (334)
Q Consensus 73 n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~----~~~~~~~~~~l~~L~~L~Ls~N~ 148 (334)
+ ++..-..+|.+ .+|+.+.+ .+.++......|..+++|+.+++.+|.+.. .++. .+|..+++|+.+++.+ .
T Consensus 236 ~-l~~I~~~aF~~-~~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~-~aF~~c~~L~~l~l~~-~ 310 (401)
T 4fdw_A 236 N-VSTIGQEAFRE-SGITTVKL-PNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHP-YCLEGCPKLARFEIPE-S 310 (401)
T ss_dssp T-CCEECTTTTTT-CCCSEEEE-ETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECT-TTTTTCTTCCEECCCT-T
T ss_pred C-ccCcccccccc-CCccEEEe-CCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECH-HHhhCCccCCeEEeCC-c
Confidence 5 55466677877 79999999 455777778899999999999999987641 1222 2458899999999984 3
Q ss_pred cccccchhhHHhHHhhhhcCCcccccccccCCCCCCceeeEEEEEeccchhhhhhhhheeEEEccCcccccCCchhhhCc
Q 019924 149 FTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKL 228 (334)
Q Consensus 149 l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l 228 (334)
++.... . .+..+++|+.++|..| ++...+.+|.++
T Consensus 311 i~~I~~-~-------------------------------------------aF~~c~~L~~l~lp~~-l~~I~~~aF~~~ 345 (401)
T 4fdw_A 311 IRILGQ-G-------------------------------------------LLGGNRKVTQLTIPAN-VTQINFSAFNNT 345 (401)
T ss_dssp CCEECT-T-------------------------------------------TTTTCCSCCEEEECTT-CCEECTTSSSSS
T ss_pred eEEEhh-h-------------------------------------------hhcCCCCccEEEECcc-ccEEcHHhCCCC
Confidence 543222 2 2233677888888655 665667788888
Q ss_pred CCCCeeeccCCccCCCC
Q 019924 229 NLLKGLNISHNNLTGLC 245 (334)
Q Consensus 229 ~~L~~L~Ls~N~l~~l~ 245 (334)
+|+.+++++|.+..+.
T Consensus 346 -~L~~l~l~~n~~~~l~ 361 (401)
T 4fdw_A 346 -GIKEVKVEGTTPPQVF 361 (401)
T ss_dssp -CCCEEEECCSSCCBCC
T ss_pred -CCCEEEEcCCCCcccc
Confidence 8999999998876654
No 147
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.03 E-value=3.7e-10 Score=101.03 Aligned_cols=145 Identities=20% Similarity=0.233 Sum_probs=98.0
Q ss_pred cCcCccCCCCccEEeCCCCccccCCCccccCCCCCCEEEccCCcCCcCCChhhh--cCCCCCEEEeec--ccCccc----
Q 019924 55 IPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLE--ILPELQVLILRS--NRFWGP---- 126 (334)
Q Consensus 55 ~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~--~l~~L~~L~L~~--N~l~~~---- 126 (334)
++..+..+++|+.|++++|.-. .++. +. +++|++|++..+.+.......+. .+|+|++|+|+. |...+.
T Consensus 164 L~~ll~~~P~L~~L~L~g~~~l-~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~ 240 (362)
T 2ra8_A 164 LSPVLDAMPLLNNLKIKGTNNL-SIGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMN 240 (362)
T ss_dssp CHHHHHTCTTCCEEEEECCBTC-BCCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGG
T ss_pred HHHHHhcCCCCcEEEEeCCCCc-eecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHH
Confidence 3455677899999999988411 2343 43 88999999999988654434444 789999999964 222111
Q ss_pred -CCCCCCCCCCCCccEEEecCCccccccchhhHHhHHhhhhcCCcccccccccCCCCCCceeeEEEEEeccchhhhhhhh
Q 019924 127 -IGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILT 205 (334)
Q Consensus 127 -~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~ 205 (334)
+...+....+++|+.|++++|.+.+......+ ... .++
T Consensus 241 ~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la-------~a~----------------------------------~~~ 279 (362)
T 2ra8_A 241 VFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFL-------ESD----------------------------------ILP 279 (362)
T ss_dssp GTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHH-------HCS----------------------------------SGG
T ss_pred HHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHH-------hCc----------------------------------cCC
Confidence 01112113579999999999988743221111 001 167
Q ss_pred heeEEEccCcccccCC----chhhhCcCCCCeeeccCCccCC
Q 019924 206 IFMTIDLSSNKFQGGI----PEVVGKLNLLKGLNISHNNLTG 243 (334)
Q Consensus 206 ~L~~L~Ls~N~l~~~~----p~~l~~l~~L~~L~Ls~N~l~~ 243 (334)
+|+.|||+.|.+++.. +..+..+++|+.|++++|.+++
T Consensus 280 ~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d 321 (362)
T 2ra8_A 280 QLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSD 321 (362)
T ss_dssp GCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCH
T ss_pred CCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCH
Confidence 8999999999998643 3444567999999999999874
No 148
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.85 E-value=7.2e-10 Score=99.12 Aligned_cols=157 Identities=18% Similarity=0.162 Sum_probs=99.8
Q ss_pred CCCCEEeCCCCcCccccCcCccCCCCccEEeCCCCccccCCCcccc--CCCCCCEEEccC--CcCCcC-----CChhh--
Q 019924 39 LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLV--NCHHLEVLNVGN--NQINDN-----FPNWL-- 107 (334)
Q Consensus 39 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~--~l~~L~~L~Ls~--N~l~~~-----~~~~l-- 107 (334)
++|+.|++++|.-. .++. +. +++|+.|++..|.++......+. .+++|++|+|+. |...+. +...+
T Consensus 172 P~L~~L~L~g~~~l-~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~ 248 (362)
T 2ra8_A 172 PLLNNLKIKGTNNL-SIGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSK 248 (362)
T ss_dssp TTCCEEEEECCBTC-BCCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCT
T ss_pred CCCcEEEEeCCCCc-eecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhc
Confidence 56778888776311 2233 33 78999999999988643333343 689999999863 222111 11122
Q ss_pred hcCCCCCEEEeecccCcccCCCCC-CCCCCCCccEEEecCCccccccchhhHHhHHhhhhcCCcccccccccCCCCCCce
Q 019924 108 EILPELQVLILRSNRFWGPIGENT-TIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYY 186 (334)
Q Consensus 108 ~~l~~L~~L~L~~N~l~~~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l 186 (334)
..+++|++|++++|.+.+..+..+ ....+++|++|+|+.|.+.+.........+
T Consensus 249 ~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L------------------------- 303 (362)
T 2ra8_A 249 DRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHV------------------------- 303 (362)
T ss_dssp TTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTH-------------------------
T ss_pred CCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhc-------------------------
Confidence 257999999999999864322111 013478999999999998764322211111
Q ss_pred eeEEEEEeccchhhhhhhhheeEEEccCcccccCCchhhhC-cCCCCeeeccCCc
Q 019924 187 ESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGK-LNLLKGLNISHNN 240 (334)
Q Consensus 187 ~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~-l~~L~~L~Ls~N~ 240 (334)
..+++|+.|+|++|.+++..-..+.. + ...+++++++
T Consensus 304 ---------------~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 304 ---------------DKIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp ---------------HHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred ---------------ccCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence 12678999999999988655555544 2 3567888776
No 149
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.79 E-value=3.4e-10 Score=91.65 Aligned_cols=117 Identities=15% Similarity=0.136 Sum_probs=86.7
Q ss_pred CCCCCCCCEEeCCCC-cCccc----cCcCccCCCCccEEeCCCCccccC----CCccccCCCCCCEEEccCCcCCcC---
Q 019924 35 FDSNLTHKVLDMRMN-NFNGK----IPRKFVKSCNLTSLNLNGNRLEGP----LPPSLVNCHHLEVLNVGNNQINDN--- 102 (334)
Q Consensus 35 l~~n~~L~~L~Ls~N-~l~~~----~p~~~~~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~--- 102 (334)
+..++.|++|+|++| .+... +...+...++|++|+|++|+|... +...+...++|++|+|++|.|+..
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~ 111 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL 111 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHH
Confidence 344577899999999 88742 445566788999999999998743 345566678999999999999764
Q ss_pred -CChhhhcCCCCCEEEe--ecccCcccCCCCC--CCCCCCCccEEEecCCcccc
Q 019924 103 -FPNWLEILPELQVLIL--RSNRFWGPIGENT--TIVPFPSLRIIDLSHNEFTG 151 (334)
Q Consensus 103 -~~~~l~~l~~L~~L~L--~~N~l~~~~~~~~--~~~~l~~L~~L~Ls~N~l~~ 151 (334)
+...+...++|++|+| ++|.+.......+ .+...++|+.|++++|.+..
T Consensus 112 ~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~ 165 (185)
T 1io0_A 112 ALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGP 165 (185)
T ss_dssp HHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHH
T ss_pred HHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCCh
Confidence 2455667789999999 8899854321111 12456889999999998863
No 150
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.71 E-value=3.4e-09 Score=85.67 Aligned_cols=97 Identities=19% Similarity=0.207 Sum_probs=74.4
Q ss_pred ccCcCccCCCCccEEeCCCC-ccccC----CCccccCCCCCCEEEccCCcCCcCC----ChhhhcCCCCCEEEeecccCc
Q 019924 54 KIPRKFVKSCNLTSLNLNGN-RLEGP----LPPSLVNCHHLEVLNVGNNQINDNF----PNWLEILPELQVLILRSNRFW 124 (334)
Q Consensus 54 ~~p~~~~~l~~L~~L~L~~n-~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~~----~~~l~~l~~L~~L~L~~N~l~ 124 (334)
.+...+...++|++|+|++| .+... +...+...++|++|+|++|.++... ...+...++|++|+|++|.|.
T Consensus 27 ~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~ 106 (185)
T 1io0_A 27 TLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFIS 106 (185)
T ss_dssp HHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCC
T ss_pred HHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCC
Confidence 34456777899999999999 88742 4556777899999999999997632 344556789999999999986
Q ss_pred cc----CCCCCCCCCCCCccEEEe--cCCccccc
Q 019924 125 GP----IGENTTIVPFPSLRIIDL--SHNEFTGV 152 (334)
Q Consensus 125 ~~----~~~~~~~~~l~~L~~L~L--s~N~l~~~ 152 (334)
.. +... +...++|++|++ ++|.+...
T Consensus 107 ~~g~~~l~~~--L~~n~~L~~L~L~~~~N~i~~~ 138 (185)
T 1io0_A 107 GSGILALVEA--LQSNTSLIELRIDNQSQPLGNN 138 (185)
T ss_dssp HHHHHHHHHG--GGGCSSCCEEECCCCSSCCCHH
T ss_pred HHHHHHHHHH--HHhCCCceEEEecCCCCCCCHH
Confidence 43 1222 366788999999 88998754
No 151
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.60 E-value=3.1e-09 Score=90.52 Aligned_cols=66 Identities=24% Similarity=0.305 Sum_probs=34.0
Q ss_pred CCCCCCEEEccCCcCCc--CCChhhhcCCCCCEEEeecccCcccCCCCCCCCCCCCccEEEecCCccccc
Q 019924 85 NCHHLEVLNVGNNQIND--NFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGV 152 (334)
Q Consensus 85 ~l~~L~~L~Ls~N~l~~--~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 152 (334)
++++|+.|+|++|++++ .+|..+..+++|+.|+|++|++++.. ....+..+ +|+.|++++|.+.+.
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~-~l~~l~~l-~L~~L~L~~Npl~~~ 235 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSER-ELDKIKGL-KLEELWLDGNSLCDT 235 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGG-GGGGGTTS-CCSEEECTTSTTGGG
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCch-hhhhcccC-CcceEEccCCcCccc
Confidence 45556666666666655 22344555666666666666654331 10011222 566666666666543
No 152
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.55 E-value=5.9e-08 Score=82.58 Aligned_cols=98 Identities=23% Similarity=0.335 Sum_probs=68.5
Q ss_pred EeCCCCcCc---cccCcCccCCCCccEEeCCCCcccc--CCCccccCCCCCCEEEccCCcCCcCCChhhhcCC--CCCEE
Q 019924 44 LDMRMNNFN---GKIPRKFVKSCNLTSLNLNGNRLEG--PLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILP--ELQVL 116 (334)
Q Consensus 44 L~Ls~N~l~---~~~p~~~~~l~~L~~L~L~~n~l~~--~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~--~L~~L 116 (334)
++++.|... ..++....++++|+.|+|++|+|++ .+|..+..+++|+.|+|++|++++. ..+..+. +|++|
T Consensus 148 l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L 225 (267)
T 3rw6_A 148 IDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEEL 225 (267)
T ss_dssp CCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEE
T ss_pred ccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceE
Confidence 677777543 2222223457889999999999986 3456667889999999999999874 3344444 89999
Q ss_pred EeecccCcccCCCC-----CCCCCCCCccEEE
Q 019924 117 ILRSNRFWGPIGEN-----TTIVPFPSLRIID 143 (334)
Q Consensus 117 ~L~~N~l~~~~~~~-----~~~~~l~~L~~L~ 143 (334)
+|++|.+.+.++.. ..+..+++|+.||
T Consensus 226 ~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 226 WLDGNSLCDTFRDQSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp ECTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred EccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence 99999987655421 1235678888876
No 153
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.35 E-value=4e-06 Score=75.85 Aligned_cols=227 Identities=13% Similarity=0.099 Sum_probs=112.0
Q ss_pred CCCcccEEEcCCCCCCCCCC---CCCCCCCeEECCCC------------CCCCEEeCCCC--------------------
Q 019924 5 GIATLYYLDLSNNFLTNIEY---FPPTNMTQLNFDSN------------LTHKVLDMRMN-------------------- 49 (334)
Q Consensus 5 ~l~~L~~L~Ls~n~l~~~~~---~~~~~L~~L~l~~n------------~~L~~L~Ls~N-------------------- 49 (334)
++++|+.+++..+ ++.+.. ..+.+|+.+++.++ ..|+.+.+..+
T Consensus 69 ~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~l~~I~~~aF~~c~~L~~i~~p~~l~~i~~~aF~~~~~~~~~~~ 147 (394)
T 4fs7_A 69 GCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDSVKMIGRCTFSGCYALKSILLPLMLKSIGVEAFKGCDFKEITIP 147 (394)
T ss_dssp TCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTTCCEECTTTTTTCTTCCCCCCCTTCCEECTTTTTTCCCSEEECC
T ss_pred CCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCCceEccchhhcccccchhhcccCceeeecceeeecccccccccC
Confidence 5677778877644 555544 34556777766544 33333333211
Q ss_pred -cCccccCcCccCCCCccEEeCCCCccccCCCccccCCCCCCEEEccCCcCCcCCChhhhcCCCCCEEEeecccCc----
Q 019924 50 -NFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFW---- 124 (334)
Q Consensus 50 -~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~---- 124 (334)
.+......+|.++.+|+.+.+..+..+ .....|.++.+|+.+++..| ++......|..++.|+.+.+..+...
T Consensus 148 ~~~~~i~~~aF~~c~~L~~i~l~~~~~~-I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~i~~~ 225 (394)
T 4fs7_A 148 EGVTVIGDEAFATCESLEYVSLPDSMET-LHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYYLGDF 225 (394)
T ss_dssp TTCCEECTTTTTTCTTCCEEECCTTCCE-ECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCEECTT
T ss_pred ccccccchhhhcccCCCcEEecCCccce-eccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceEeehh
Confidence 111123356778888888888765433 55567888888888888665 44434445555555555444332110
Q ss_pred ----------------ccCCCCCCCCCCCCccEEEecCCccccccchhhHHhHHhhhhcCCcccccccccCCCCCCceee
Q 019924 125 ----------------GPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYES 188 (334)
Q Consensus 125 ----------------~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~ 188 (334)
..+.. .++..+..++.+.+..+... +....+..+..+.........+.... ......+..
T Consensus 226 ~~~~~~l~~i~ip~~~~~i~~-~~f~~~~~l~~~~~~~~~~~--i~~~~F~~~~~l~~~~~~~~~i~~~~-F~~~~~L~~ 301 (394)
T 4fs7_A 226 ALSKTGVKNIIIPDSFTELGK-SVFYGCTDLESISIQNNKLR--IGGSLFYNCSGLKKVIYGSVIVPEKT-FYGCSSLTE 301 (394)
T ss_dssp TTTTCCCCEEEECTTCCEECS-STTTTCSSCCEEEECCTTCE--ECSCTTTTCTTCCEEEECSSEECTTT-TTTCTTCCE
T ss_pred hcccCCCceEEECCCceeccc-ccccccccceeEEcCCCcce--eeccccccccccceeccCceeecccc-ccccccccc
Confidence 01111 13467788888888776432 12222333333222111000000000 000001111
Q ss_pred EEE--EEeccchhhhhhhhheeEEEccCcccccCCchhhhCcCCCCeeeccCC
Q 019924 189 IIL--TIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHN 239 (334)
Q Consensus 189 ~~~--~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N 239 (334)
... .++.+....+..+.+|+.+++.++ ++.....+|.++.+|+.+++..|
T Consensus 302 i~l~~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~ 353 (394)
T 4fs7_A 302 VKLLDSVKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS 353 (394)
T ss_dssp EEECTTCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT
T ss_pred cccccccceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc
Confidence 111 123344455555666666666543 44344556666666666666544
No 154
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.33 E-value=5.1e-06 Score=75.13 Aligned_cols=202 Identities=11% Similarity=0.112 Sum_probs=121.0
Q ss_pred CCCcccEEEcCCCCCCCCCC---CCCCCCCeEECCCC------------CCCCEEeCCCCcCccccCcCccCCCCccEEe
Q 019924 5 GIATLYYLDLSNNFLTNIEY---FPPTNMTQLNFDSN------------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLN 69 (334)
Q Consensus 5 ~l~~L~~L~Ls~n~l~~~~~---~~~~~L~~L~l~~n------------~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 69 (334)
++++|+.+++.++. ..+.. ..+.+|+.+.+..+ ..|+.+.+..+... +...+....+|+.+.
T Consensus 160 ~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~~~~I~~~~F~~~~~L~~i~~~~~~~~--i~~~~~~~~~l~~i~ 236 (394)
T 4fs7_A 160 TCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRNLKIIRDYCFAECILLENMEFPNSLYY--LGDFALSKTGVKNII 236 (394)
T ss_dssp TCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTTCCEECTTTTTTCTTCCBCCCCTTCCE--ECTTTTTTCCCCEEE
T ss_pred ccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCCceEeCchhhccccccceeecCCCceE--eehhhcccCCCceEE
Confidence 56889999997653 33333 34455666655444 44555555444322 222333445667766
Q ss_pred CCCCccccCCCccccCCCCCCEEEccCCcCCcCCChhhhcCCCCCEEEeecccCcccCCCCCCCCCCCCccEEEecCCcc
Q 019924 70 LNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEF 149 (334)
Q Consensus 70 L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l 149 (334)
+..+ ++......+.++..++.+.+..+.. ......|..+..++.+....+.+ +. ..+..+.+|+.+.+..+ +
T Consensus 237 ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~-~i~~~~F~~~~~l~~~~~~~~~i----~~-~~F~~~~~L~~i~l~~~-i 308 (394)
T 4fs7_A 237 IPDS-FTELGKSVFYGCTDLESISIQNNKL-RIGGSLFYNCSGLKKVIYGSVIV----PE-KTFYGCSSLTEVKLLDS-V 308 (394)
T ss_dssp ECTT-CCEECSSTTTTCSSCCEEEECCTTC-EECSCTTTTCTTCCEEEECSSEE----CT-TTTTTCTTCCEEEECTT-C
T ss_pred ECCC-ceecccccccccccceeEEcCCCcc-eeeccccccccccceeccCceee----cc-ccccccccccccccccc-c
Confidence 6543 2223445677788888888877643 33556677778888877766543 22 23466778888877654 3
Q ss_pred ccccchhhHHhHHhhhhcCCcccccccccCCCCCCceeeEEEEEeccchhhhhhhhheeEEEccCcccccCCchhhhCcC
Q 019924 150 TGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLN 229 (334)
Q Consensus 150 ~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~ 229 (334)
+. +....|.++.+|...... . .+..+....+..+.+|+.+++..+ ++.....+|.+++
T Consensus 309 ~~-I~~~aF~~c~~L~~i~lp-~-------------------~v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~ 366 (394)
T 4fs7_A 309 KF-IGEEAFESCTSLVSIDLP-Y-------------------LVEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCI 366 (394)
T ss_dssp CE-ECTTTTTTCTTCCEECCC-T-------------------TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCT
T ss_pred ce-echhhhcCCCCCCEEEeC-C-------------------cccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCC
Confidence 32 233335555544433220 0 122344556666888999999876 6656667899999
Q ss_pred CCCeeeccCC
Q 019924 230 LLKGLNISHN 239 (334)
Q Consensus 230 ~L~~L~Ls~N 239 (334)
+|+.+++..+
T Consensus 367 ~L~~i~lp~~ 376 (394)
T 4fs7_A 367 NLKKVELPKR 376 (394)
T ss_dssp TCCEEEEEGG
T ss_pred CCCEEEECCC
Confidence 9999998754
No 155
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.19 E-value=2.4e-07 Score=73.41 Aligned_cols=92 Identities=12% Similarity=0.059 Sum_probs=63.0
Q ss_pred cCcCccCCCCccEEeCCCCccccCCCccccCCCCCCEEEccCCc-CCcCCChhhhcC----CCCCEEEeeccc-CcccCC
Q 019924 55 IPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQ-INDNFPNWLEIL----PELQVLILRSNR-FWGPIG 128 (334)
Q Consensus 55 ~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~-l~~~~~~~l~~l----~~L~~L~L~~N~-l~~~~~ 128 (334)
+|.....-.+|+.||+++|.|+..--..+.++++|++|+|++|. +++..-..+..+ ++|++|++++|. ++..-.
T Consensus 53 LP~~~~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl 132 (176)
T 3e4g_A 53 LPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGI 132 (176)
T ss_dssp SCCCSTTCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHH
T ss_pred CCcccCCCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHH
Confidence 34433333468888888888875544556788889999998884 665444445554 368999998875 654333
Q ss_pred CCCCCCCCCCccEEEecCCc
Q 019924 129 ENTTIVPFPSLRIIDLSHNE 148 (334)
Q Consensus 129 ~~~~~~~l~~L~~L~Ls~N~ 148 (334)
..+ ..+++|+.|+++++.
T Consensus 133 ~~L--~~~~~L~~L~L~~c~ 150 (176)
T 3e4g_A 133 IAL--HHFRNLKYLFLSDLP 150 (176)
T ss_dssp HHG--GGCTTCCEEEEESCT
T ss_pred HHH--hcCCCCCEEECCCCC
Confidence 323 568899999998885
No 156
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.18 E-value=3.8e-07 Score=72.26 Aligned_cols=83 Identities=11% Similarity=-0.001 Sum_probs=63.4
Q ss_pred CCCEEeCCCCcCccccCcCccCCCCccEEeCCCCc-cccCCCccccCC----CCCCEEEccCCc-CCcCCChhhhcCCCC
Q 019924 40 THKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNR-LEGPLPPSLVNC----HHLEVLNVGNNQ-INDNFPNWLEILPEL 113 (334)
Q Consensus 40 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~-l~~~~p~~l~~l----~~L~~L~Ls~N~-l~~~~~~~l~~l~~L 113 (334)
.|+.||++++.++...-..+.++++|++|+|++|. ++..--..+..+ ++|++|++++|. +++..-..+..+++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 45889999998886666677889999999999985 664322334443 479999999974 776555667789999
Q ss_pred CEEEeeccc
Q 019924 114 QVLILRSNR 122 (334)
Q Consensus 114 ~~L~L~~N~ 122 (334)
++|+++++.
T Consensus 142 ~~L~L~~c~ 150 (176)
T 3e4g_A 142 KYLFLSDLP 150 (176)
T ss_dssp CEEEEESCT
T ss_pred CEEECCCCC
Confidence 999999885
No 157
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.96 E-value=0.00031 Score=63.34 Aligned_cols=112 Identities=13% Similarity=0.077 Sum_probs=66.1
Q ss_pred ChhhhcCCCCCEEEeecccCcccCCCCCCCCCCCCccEEEecCCccccccchhhHHhHHhhhhcCCcccccccccCCCCC
Q 019924 104 PNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSS 183 (334)
Q Consensus 104 ~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~ 183 (334)
...|..+..|+.+.+..+.. .+.. .++..+++|+.+.+.. .++. ++...|.++.+|+......
T Consensus 258 ~~aF~~c~~L~~i~lp~~~~--~I~~-~aF~~c~~L~~i~l~~-~i~~-I~~~aF~~c~~L~~i~lp~------------ 320 (394)
T 4gt6_A 258 THAFDSCAYLASVKMPDSVV--SIGT-GAFMNCPALQDIEFSS-RITE-LPESVFAGCISLKSIDIPE------------ 320 (394)
T ss_dssp TTTTTTCSSCCEEECCTTCC--EECT-TTTTTCTTCCEEECCT-TCCE-ECTTTTTTCTTCCEEECCT------------
T ss_pred cceeeecccccEEecccccc--eecC-cccccccccccccCCC-cccc-cCceeecCCCCcCEEEeCC------------
Confidence 34566777777777765532 1222 2346677777777753 3332 2333355444443322200
Q ss_pred CceeeEEEEEeccchhhhhhhhheeEEEccCcccccCCchhhhCcCCCCeeeccCCcc
Q 019924 184 NYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNL 241 (334)
Q Consensus 184 ~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 241 (334)
.++.+....+..+.+|+.+.+..+ ++.....+|.++++|+.+++.+|..
T Consensus 321 --------~v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~ 369 (394)
T 4gt6_A 321 --------GITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRS 369 (394)
T ss_dssp --------TCCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHH
T ss_pred --------cccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCcee
Confidence 123344556666888888888654 6645567888899999999888753
No 158
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.91 E-value=7e-07 Score=72.04 Aligned_cols=114 Identities=12% Similarity=0.105 Sum_probs=80.3
Q ss_pred CCCCCCCCEEeCCCC-cCcc----ccCcCccCCCCccEEeCCCCccccC----CCccccCCCCCCEEEccCCcCCcCCC-
Q 019924 35 FDSNLTHKVLDMRMN-NFNG----KIPRKFVKSCNLTSLNLNGNRLEGP----LPPSLVNCHHLEVLNVGNNQINDNFP- 104 (334)
Q Consensus 35 l~~n~~L~~L~Ls~N-~l~~----~~p~~~~~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~~~- 104 (334)
+.+|+.|++|+|++| +|.. .+.+.+..-+.|+.|+|++|+|... +.+.+..-+.|++|+|++|.|+....
T Consensus 37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ 116 (197)
T 1pgv_A 37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA 116 (197)
T ss_dssp HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHH
Confidence 345578899999985 8763 2445566778999999999999743 44455667899999999999976433
Q ss_pred ---hhhhcCCCCCEEEeecc---cCccc----CCCCCCCCCCCCccEEEecCCccc
Q 019924 105 ---NWLEILPELQVLILRSN---RFWGP----IGENTTIVPFPSLRIIDLSHNEFT 150 (334)
Q Consensus 105 ---~~l~~l~~L~~L~L~~N---~l~~~----~~~~~~~~~l~~L~~L~Ls~N~l~ 150 (334)
..+..-+.|++|+|++| .+... +.. .+...+.|+.|+++.|.+.
T Consensus 117 ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~--aL~~N~tL~~L~l~~~~~g 170 (197)
T 1pgv_A 117 RLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMM--AIEENESLLRVGISFASME 170 (197)
T ss_dssp HHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHH--HHHHCSSCCEEECCCCCHH
T ss_pred HHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHH--HHHhCCCcCeEeccCCCcc
Confidence 33445677999999865 33211 111 1245678999999888754
No 159
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.90 E-value=0.00031 Score=63.33 Aligned_cols=135 Identities=13% Similarity=0.130 Sum_probs=80.6
Q ss_pred ccCcCccCCCCccEEeCCCCccccCCCccccCCCCCCEEEccCCcCCcCCChhhhcCCCCCEEEeecccCcccCCCCCCC
Q 019924 54 KIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTI 133 (334)
Q Consensus 54 ~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~ 133 (334)
.....|.++..|+.+.+..+..+ ....+|.++++|+.+.+. +.++......|.++.+|+.+++..+ ++. +.. .+|
T Consensus 256 i~~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~-I~~-~aF 330 (394)
T 4gt6_A 256 IETHAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQ-ILD-DAF 330 (394)
T ss_dssp ECTTTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCE-ECT-TTT
T ss_pred cccceeeecccccEEecccccce-ecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccE-ehH-hHh
Confidence 44556777788888887665443 455677778888888875 4455555667777888888887654 322 222 234
Q ss_pred CCCCCccEEEecCCccccccchhhHHhHHhhhhcCCcccccccccCCCCCCceeeEEEEEeccchhhhhhhhheeEEEcc
Q 019924 134 VPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLS 213 (334)
Q Consensus 134 ~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls 213 (334)
.++.+|+.+.+..+ ++.. ....+..+++|+.+++.
T Consensus 331 ~~C~~L~~i~ip~s-v~~I--------------------------------------------~~~aF~~C~~L~~i~~~ 365 (394)
T 4gt6_A 331 AGCEQLERIAIPSS-VTKI--------------------------------------------PESAFSNCTALNNIEYS 365 (394)
T ss_dssp TTCTTCCEEEECTT-CCBC--------------------------------------------CGGGGTTCTTCCEEEES
T ss_pred hCCCCCCEEEECcc-cCEE--------------------------------------------hHhHhhCCCCCCEEEEC
Confidence 77778888877543 3322 22334447788899998
Q ss_pred CcccccCCchhhhCcCCCCeeeccCCcc
Q 019924 214 SNKFQGGIPEVVGKLNLLKGLNISHNNL 241 (334)
Q Consensus 214 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 241 (334)
++.... ..+.....|+.+.+..|.+
T Consensus 366 ~~~~~~---~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 366 GSRSQW---NAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp SCHHHH---HTCBCCCCC----------
T ss_pred Cceeeh---hhhhccCCCCEEEeCCCCE
Confidence 876541 4566778888888876653
No 160
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.71 E-value=0.00072 Score=60.45 Aligned_cols=138 Identities=9% Similarity=0.051 Sum_probs=82.5
Q ss_pred CcCccCCCCccEEeCCCCccccCCCccccCCCCCCEEEccCCcCCcCCChhhhcCCCCCEEEeecccCcccCCCCCCCCC
Q 019924 56 PRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVP 135 (334)
Q Consensus 56 p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~ 135 (334)
...+..+.+|+.+.+..+ ++......+.++..|+.+.+..+ ++......|..+.+|+.+.+..+ +. .++. .++..
T Consensus 210 ~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~-~i~~-~aF~~ 284 (379)
T 4h09_A 210 AYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VK-TVPY-LLCSG 284 (379)
T ss_dssp TTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CS-EECT-TTTTT
T ss_pred ecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ce-eccc-ccccc
Confidence 344555666666666544 33244456666777777777654 44445556667777777776543 32 1222 13366
Q ss_pred CCCccEEEecCCccccccchhhHHhHHhhhhcCCcccccccccCCCCCCceeeEEEEEeccchhhhhhhhheeEEEccCc
Q 019924 136 FPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSN 215 (334)
Q Consensus 136 l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N 215 (334)
+++|+.+.+.++.++... ...+..+.+|+.++|..+
T Consensus 285 c~~L~~i~l~~~~i~~I~--------------------------------------------~~aF~~c~~L~~i~lp~~ 320 (379)
T 4h09_A 285 CSNLTKVVMDNSAIETLE--------------------------------------------PRVFMDCVKLSSVTLPTA 320 (379)
T ss_dssp CTTCCEEEECCTTCCEEC--------------------------------------------TTTTTTCTTCCEEECCTT
T ss_pred ccccccccccccccceeh--------------------------------------------hhhhcCCCCCCEEEcCcc
Confidence 677777777666554322 222334677888888654
Q ss_pred ccccCCchhhhCcCCCCeeeccCCccCCC
Q 019924 216 KFQGGIPEVVGKLNLLKGLNISHNNLTGL 244 (334)
Q Consensus 216 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~~l 244 (334)
++.....+|.++++|+.+.+..+ ++.+
T Consensus 321 -l~~I~~~aF~~C~~L~~i~ip~~-v~~I 347 (379)
T 4h09_A 321 -LKTIQVYAFKNCKALSTISYPKS-ITLI 347 (379)
T ss_dssp -CCEECTTTTTTCTTCCCCCCCTT-CCEE
T ss_pred -ccEEHHHHhhCCCCCCEEEECCc-cCEE
Confidence 55455667888888998888654 5443
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.66 E-value=2.1e-05 Score=63.38 Aligned_cols=113 Identities=12% Similarity=0.062 Sum_probs=74.4
Q ss_pred CcccEEEcCCC-CCCCCCCCCCCCCCeEECCCCCCCCEEeCCCCcCccccC----cCccCCCCccEEeCCCCccccC---
Q 019924 7 ATLYYLDLSNN-FLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIP----RKFVKSCNLTSLNLNGNRLEGP--- 78 (334)
Q Consensus 7 ~~L~~L~Ls~n-~l~~~~~~~~~~L~~L~l~~n~~L~~L~Ls~N~l~~~~p----~~~~~l~~L~~L~L~~n~l~~~--- 78 (334)
+.|+.|+|++| .|....... |-. -|..|..|+.|+|++|+|..... ..+..-+.|++|+|+.|.|+..
T Consensus 41 ~~L~~L~L~~nn~igd~ga~~---la~-aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ 116 (197)
T 1pgv_A 41 TDLKEVNINNMKRVSKERIRS---LIE-AACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA 116 (197)
T ss_dssp SSCCEEECTTCCSSCHHHHHH---HHH-HHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred CCccEEECCCCCCCCHHHHHH---HHH-HHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHH
Confidence 45677777764 554321100 000 11234677999999999985433 3444568899999999999743
Q ss_pred -CCccccCCCCCCEEEccCC---cCCcC----CChhhhcCCCCCEEEeecccC
Q 019924 79 -LPPSLVNCHHLEVLNVGNN---QINDN----FPNWLEILPELQVLILRSNRF 123 (334)
Q Consensus 79 -~p~~l~~l~~L~~L~Ls~N---~l~~~----~~~~l~~l~~L~~L~L~~N~l 123 (334)
+.+++..-+.|++|+|++| .+... +...+..-+.|+.|+++.|.+
T Consensus 117 ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 117 RLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred HHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 4456677788999999865 44432 234556778999999987765
No 162
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.56 E-value=0.0004 Score=62.12 Aligned_cols=101 Identities=14% Similarity=0.093 Sum_probs=47.6
Q ss_pred CCCEEeCCCCcCccccCcCccCCCCccEEeCCCCccccCCCccccCCCCCCEEEccCCcCCcCCChhhhcCCCCCEEEee
Q 019924 40 THKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILR 119 (334)
Q Consensus 40 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~ 119 (334)
.|+.+.+..+ ++......|.++.+|+.+.+..+ ++......|.++.+|+.+.+.++.++......|.++.+|+.+.+.
T Consensus 241 ~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp 318 (379)
T 4h09_A 241 ALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLP 318 (379)
T ss_dssp SCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECC
T ss_pred cceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcC
Confidence 3444554433 33333445555555555555432 332333445555555555555555554444555555555555554
Q ss_pred cccCcccCCCCCCCCCCCCccEEEec
Q 019924 120 SNRFWGPIGENTTIVPFPSLRIIDLS 145 (334)
Q Consensus 120 ~N~l~~~~~~~~~~~~l~~L~~L~Ls 145 (334)
.+ ++. +.. .+|.++.+|+.+.+.
T Consensus 319 ~~-l~~-I~~-~aF~~C~~L~~i~ip 341 (379)
T 4h09_A 319 TA-LKT-IQV-YAFKNCKALSTISYP 341 (379)
T ss_dssp TT-CCE-ECT-TTTTTCTTCCCCCCC
T ss_pred cc-ccE-EHH-HHhhCCCCCCEEEEC
Confidence 33 221 111 123455555555543
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.35 E-value=0.00049 Score=51.64 Aligned_cols=35 Identities=26% Similarity=0.331 Sum_probs=16.4
Q ss_pred CCCEEEccCCcCCcCCChhhhcCCCCCEEEeeccc
Q 019924 88 HLEVLNVGNNQINDNFPNWLEILPELQVLILRSNR 122 (334)
Q Consensus 88 ~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~ 122 (334)
+|++|+|++|+|+...+..|..+++|++|+|++|.
T Consensus 32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred CCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence 34455555555544444444444444444444444
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.16 E-value=0.001 Score=49.85 Aligned_cols=57 Identities=25% Similarity=0.352 Sum_probs=42.8
Q ss_pred CEEeCCCCcCc-cccCcCccCCCCccEEeCCCCccccCCCccccCCCCCCEEEccCCcCC
Q 019924 42 KVLDMRMNNFN-GKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQIN 100 (334)
Q Consensus 42 ~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 100 (334)
..++.+++.++ ..+|..+. .+|+.|+|++|+|+...+..|..+++|++|+|++|.+.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 46778888776 34554433 36888899999888666777888888999999988774
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=67.06 E-value=15 Score=25.30 Aligned_cols=40 Identities=18% Similarity=0.166 Sum_probs=19.5
Q ss_pred CccccCCCCCCEEEccCCcCCcCCChhhhcCCCCCEEEeec
Q 019924 80 PPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRS 120 (334)
Q Consensus 80 p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~ 120 (334)
...|.++.+|+.+.+-.+ ++.....+|..+.+|+.+.+..
T Consensus 13 ~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 13 KSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp SCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred HHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 344555555555555433 3333344555555555555544
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=62.10 E-value=12 Score=25.84 Aligned_cols=48 Identities=15% Similarity=0.168 Sum_probs=32.5
Q ss_pred CcCccccCcCccCCCCccEEeCCCCccccCCCccccCCCCCCEEEccCC
Q 019924 49 NNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNN 97 (334)
Q Consensus 49 N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N 97 (334)
..++..-...|.++.+|+.+.+..+ ++..-..+|.+|.+|+.+.+...
T Consensus 6 ~~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 6 EPVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred CccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 3455555667778888888877665 44345567788888888877654
Done!