Query 019925
Match_columns 334
No_of_seqs 204 out of 671
Neff 5.9
Searched_HMMs 29240
Date Mon Mar 25 09:08:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019925.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019925hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ihr_A Ubiquitin carboxyl-term 100.0 2E-102 8E-107 750.0 25.6 313 1-332 6-321 (328)
2 3rii_A Ubiquitin carboxyl-term 100.0 3.5E-82 1.2E-86 585.9 20.1 219 2-225 12-233 (233)
3 1xd3_A Ubiquitin carboxyl-term 100.0 9E-81 3.1E-85 575.8 18.8 214 1-223 4-230 (230)
4 4dm9_A Ubiquitin carboxyl-term 100.0 3.1E-80 1.1E-84 571.3 19.5 212 1-224 6-228 (228)
5 2wdt_A Ubiquitin carboxyl-term 100.0 1.7E-78 6E-83 560.9 17.0 213 2-225 6-228 (232)
6 1cmx_A Protein (ubiquitin YUH1 100.0 7.2E-78 2.5E-82 557.0 13.7 216 2-223 7-234 (235)
7 1slq_A VP4; beta sandwich, gre 34.2 52 0.0018 30.0 5.1 36 212-247 218-266 (278)
8 1yck_A Peptidoglycan recogniti 21.7 38 0.0013 28.8 1.9 17 153-171 71-87 (175)
9 3lay_A Zinc resistance-associa 21.6 1.8E+02 0.0063 24.9 6.3 24 264-287 112-135 (175)
10 2l82_A Designed protein OR32; 19.6 65 0.0022 26.2 2.7 31 3-33 5-35 (162)
No 1
>3ihr_A Ubiquitin carboxyl-terminal hydrolase isozyme L5; center for eukaryotic structural genomics, UCH37, UCH-L5, UB hydrolase, proteasome, INO80; 2.95A {Homo sapiens}
Probab=100.00 E-value=2.3e-102 Score=750.04 Aligned_cols=313 Identities=51% Similarity=0.920 Sum_probs=254.4
Q ss_pred CccccccCCHHHHHHHHHHcCCCCceEEEeecCChhhhhccCCcceeEEeeecCCCCcccccccc-CCCCCcccchhhhh
Q 019925 1 MSWCTIESDPGVFTELIQQMQVKGVQVEELYSLDLDSLNNLRPVYGLIFLFKWRPGEKDDRVVIK-DPNPNLFFASQVIN 79 (334)
Q Consensus 1 m~W~pLESdP~VFt~l~~~lGv~~~~f~DVyslD~~~L~~~~Pv~alIfLFp~~~~~~~~~~~~~-~~~~~v~fakQtI~ 79 (334)
++||||||||+|||.|+++|||++|+|+||||||+++|++++|||||||||||++..+....... ...++|||+||||+
T Consensus 6 ~~W~pLESnP~Vft~ll~~LGv~~~~f~DVysLD~e~L~~l~Pv~alIfLFp~~~~~e~~~~~~~~~~~~~v~f~kQtI~ 85 (328)
T 3ihr_A 6 GEWCLMESDPGVFTELIKGFGCRGAQVEEIWSLEPENFEKLKPVHGLIFLFKWQPGEEPAGSVVQDSRLDTIFFAKQVIN 85 (328)
T ss_dssp -CCCCCCCCHHHHHHHHHHHTCBSEEEEECCCCCHHHHHTTCSEEEEEEEEECCSCCCCSSEECCSTTTTTSCCCCCCSG
T ss_pred CceeeecCCHHHHHHHHHHcCCCceEEEEeccCCHHHHhcccCceEEEEEEecCchhhhcccccccCcccccchHHHhcc
Confidence 46999999999999999999999999999999999999999999999999999875443322222 22357999999999
Q ss_pred hhhHHHHHHHhhhCCC--CCCCCcchHHHHHHhcCCChhhHHhhhcCCHHHHHHHHhcCCCCCCCccccccCCCCCCcce
Q 019925 80 NACATQAILSILLNCP--DIDIGPELSKLKEFTKNFPPELKGLAINNSDAIRAAHNSFARPEPFVPEEQKAAGKDDDVYH 157 (334)
Q Consensus 80 NACgT~AlLh~l~N~~--~i~lgs~L~~f~~~t~~~~p~~Rg~~L~ns~~i~~~Hns~A~~g~~~~~~~~~~~~~~~~~H 157 (334)
||||||||||+|+|++ .|++||.|++|+++|.+|+|++||.+|+|++.|+.+|||||++|++..+ ++++.+++++||
T Consensus 86 NACGT~ALLh~l~N~~~~~I~~Gs~L~~f~~~t~~l~P~~Rg~~L~ns~~i~~aHns~A~~g~~~~d-t~~~~~d~~~~H 164 (328)
T 3ihr_A 86 NACATQAIVSVLLNCTHQDVHLGETLSEFKEFSQSFDAAMKGLALSNSDVIRQVHNSFARQQMFEFD-TKTSAKEEDAFH 164 (328)
T ss_dssp GGHHHHHHHHHHHTCCCTTCBCHHHHHHHHHHHTTSCHHHHHHHHHTCHHHHHHHHTTC------------------CEE
T ss_pred chHHHHHHHHHHHcCCcccCCCCcHHHHHHHHhcCCCHHHHHHHHhcCHHHHHHHHHHhccCCccCC-CCCCCCcCccee
Confidence 9999999999999986 4999999999999999999999999999999999999999999976432 223445667899
Q ss_pred EEEEEeeCCeEEeecCCCCCCcccCCCCCCCCcccHHHHHHHHHHHHHHhccCCCceeEEEEeecCchHHHHHHHHHHHH
Q 019925 158 FISYIPVDGVLYELDGLKEGPISLGPCTGGQGDMDWLQMVQPVIQERIERYSKSEIRFNLMAVIKNRKELYTAELKEFQR 237 (334)
Q Consensus 158 FIafV~~~G~lyELDGlk~~Pi~~G~~~~~~~~~~~l~~a~~vi~~ri~~~~~~~i~FslmAL~~~~~~~~~~~l~~l~~ 237 (334)
||||||+||+||||||||+|||+||+|++ ++|+++|+++|++||++|++++++|||||||+|++..++++|+.+++
T Consensus 165 FIafV~~dG~LyELDG~k~gPI~hG~~~~----e~~l~~a~~vi~~ri~~y~~~eirFslmAL~~d~~~~~~~~l~~l~~ 240 (328)
T 3ihr_A 165 FVSYVPVNGRLYELDGLREGPIDLGACNQ----DDWISAVRPVIEKRIQKYSEGEIRFNLMAIVSDRKMIYEQKIAELQR 240 (328)
T ss_dssp EEEEEEETTEEEEEETTSSSCEEEEECBT----TBCHHHHHHHHHHHHHHHHHHCCCEEEEEEEECHHHHHHHHHHHHHH
T ss_pred EEEEEeeCCEEEEcCCCCCCCcccCCCCc----hhHHHHHHHHHHHHHHhcCCCCceEEEEEecCChHHHHHHHHHHHHh
Confidence 99999999999999999999999999985 89999999999999999988899999999999999999999998864
Q ss_pred HHHHHHHHHhhhhhhhhccccchHHhhhhHHHHHHhHHHHHHHHHHHHHHHhhhHHHHhcccCCcHHHHHHHHHHHHhcC
Q 019925 238 KRERILQQLASLQSERMVDKTSFEALNKSLSEVNAGIEGATEKILMEEEKFKKWRTENIRRKHNYIPFLFNFLKILAEKK 317 (334)
Q Consensus 238 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~E~~k~~~~~~En~rRrhny~pfi~~llk~la~~g 317 (334)
.+. .. ....+.....+.+++.+|..+++.|++|++||++|+.||+||||||+|||+++||.||++|
T Consensus 241 ~~~------~~--------~~~~~~~~~~~~~~~~ei~~~~~~l~~E~~kr~~w~~En~rRrhny~pfi~~llk~la~~~ 306 (328)
T 3ihr_A 241 QLA------EE--------PMDTDQGNSMLSAIQSEVAKNQMLIEEEVQKLKRYKIENIRRKHNYLPFIMELLKTLAEHQ 306 (328)
T ss_dssp HHH------HS--------CCCC------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHGGGSSST
T ss_pred hhh------cc--------cccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHhcc
Confidence 211 00 0011122345677899999999999999999999999999999999999999999999999
Q ss_pred CchHHHHHHHHhhcc
Q 019925 318 QLKPLIEKAKQKTSS 332 (334)
Q Consensus 318 ~L~~l~e~a~~~~~~ 332 (334)
+|.+||++||+|+++
T Consensus 307 ~l~~~~e~ak~~~~~ 321 (328)
T 3ihr_A 307 QLIPLVEKAKEKQNA 321 (328)
T ss_dssp TTTTC----------
T ss_pred cHHHHHHHHHHHHHH
Confidence 999999999988764
No 2
>3rii_A Ubiquitin carboxyl-terminal hydrolase isozyme L5; alpha-beta-alpha fold, thiol hydroalse, cysteine protease, deubiquitinating enzyme; 2.00A {Homo sapiens} SCOP: d.3.1.0 PDB: 3ris_A 3sqa_A 3tb3_A 3a7s_A
Probab=100.00 E-value=3.5e-82 Score=585.93 Aligned_cols=219 Identities=56% Similarity=1.038 Sum_probs=191.4
Q ss_pred ccccccCCHHHHHHHHHHcCCCCceEEEeecCChhhhhccCCcceeEEeeecCCCCcccccccc-CCCCCcccchhhhhh
Q 019925 2 SWCTIESDPGVFTELIQQMQVKGVQVEELYSLDLDSLNNLRPVYGLIFLFKWRPGEKDDRVVIK-DPNPNLFFASQVINN 80 (334)
Q Consensus 2 ~W~pLESdP~VFt~l~~~lGv~~~~f~DVyslD~~~L~~~~Pv~alIfLFp~~~~~~~~~~~~~-~~~~~v~fakQtI~N 80 (334)
+||||||||+|||+|+++|||++|+|+||||||+++|++++|||||||||||++..+....... ..+++|||+||||+|
T Consensus 12 ~w~pLESnP~Vft~l~~~LGv~~~~f~DVysLD~~~L~~l~Pv~alIfLFp~~~~~~~~~~~~~~~~~~~v~f~kQtI~N 91 (233)
T 3rii_A 12 EWCLMESDPGVFTELIKGFGCRGAQVEEIWSLEPENFEKLKPVHGLIFLFKWQPGEEPAGSVVQDSRLDTIFFAKQVINN 91 (233)
T ss_dssp CSCCCCCCHHHHHHHHHHTTCBSEEEEECSCSSTTTTTTTCSEEEEEEEECCCTTCCCSSEECCSGGGGTSCCCCCCCGG
T ss_pred CeeeecCCHHHHHHHHHHhCCCCcEEEEcccCCHHHHhhccCceEEEEEEeccchhhhccCccccCCcccceEeehhccc
Confidence 5999999999999999999999999999999999999999999999999999875443322211 123479999999999
Q ss_pred hhHHHHHHHhhhCCC--CCCCCcchHHHHHHhcCCChhhHHhhhcCCHHHHHHHHhcCCCCCCCccccccCCCCCCcceE
Q 019925 81 ACATQAILSILLNCP--DIDIGPELSKLKEFTKNFPPELKGLAINNSDAIRAAHNSFARPEPFVPEEQKAAGKDDDVYHF 158 (334)
Q Consensus 81 ACgT~AlLh~l~N~~--~i~lgs~L~~f~~~t~~~~p~~Rg~~L~ns~~i~~~Hns~A~~g~~~~~~~~~~~~~~~~~HF 158 (334)
|||||||||+|+|++ .|++||.|++|+++|.+|+|++||++|+|++.|+.+||+||++|++..++ +++.+++++|||
T Consensus 92 ACgT~ALLh~l~N~~~~~i~~gs~L~~f~~~t~~~~p~~Rg~~L~n~~~i~~aH~s~A~~g~~~~dt-~~~~~~~~~~HF 170 (233)
T 3rii_A 92 ASATQAIVSVLLNCTHQDVHLGETLSEFKEFSQSFDAAMKGLALSNSDVIRQVHNSFARQQMFEFDT-KTSAKEEDAFHF 170 (233)
T ss_dssp GHHHHHHHHHHHTCCCTTCBCCHHHHHHHHHHTTCCHHHHHHHHHTCHHHHHHHHHTSCC-----------CCGGGGSEE
T ss_pred cHHHHHHHHHHHcCCcccccCCcHHHHHHHHhcCCCHHHHHHHHhcCHHHHHHHHHHhhcCCccCCC-CCCCccCcceeE
Confidence 999999999999987 59999999999999999999999999999999999999999999875432 234456678999
Q ss_pred EEEEeeCCeEEeecCCCCCCcccCCCCCCCCcccHHHHHHHHHHHHHHhccCCCceeEEEEeecCch
Q 019925 159 ISYIPVDGVLYELDGLKEGPISLGPCTGGQGDMDWLQMVQPVIQERIERYSKSEIRFNLMAVIKNRK 225 (334)
Q Consensus 159 IafV~~~G~lyELDGlk~~Pi~~G~~~~~~~~~~~l~~a~~vi~~ri~~~~~~~i~FslmAL~~~~~ 225 (334)
|||||+||+||||||||+|||+||++++ ++|+++|+++|++||++|+++++|||||||++|++
T Consensus 171 IafV~~dG~LyELDG~k~gPi~~G~~~~----e~~l~~a~~vi~~ri~~~~~~ei~FslmAL~~d~~ 233 (233)
T 3rii_A 171 VSYVPVNGRLYELDGLREGPIDLGACNQ----DDWISAVRPVIEKRIQKYSEGEIRFNLMAIVSDRK 233 (233)
T ss_dssp EEEEEETTEEEEECTTSSSCEEEEECCS----SSCHHHHHHHHHHHHHHHHHTTCCEEEEEEEECC-
T ss_pred EEEEEeCCeEEEcCCCCCCCcccCCCCc----hhHHHHHHHHHHHHHHhcCCCCcEEEEEEEcCCCC
Confidence 9999999999999999999999999976 89999999999999999988899999999999974
No 3
>1xd3_A Ubiquitin carboxyl-terminal esterase L3; enzyme-ligand complex, active site crossover loop, hydrolase; HET: GVE; 1.45A {Homo sapiens} SCOP: d.3.1.6 PDB: 1uch_A*
Probab=100.00 E-value=9e-81 Score=575.75 Aligned_cols=214 Identities=29% Similarity=0.466 Sum_probs=192.4
Q ss_pred CccccccCCHHHHHHHHHHcCCCC-ceEEEeecCChhhhhcc-CCcceeEEeeecCCCCccccc--------cccCCCCC
Q 019925 1 MSWCTIESDPGVFTELIQQMQVKG-VQVEELYSLDLDSLNNL-RPVYGLIFLFKWRPGEKDDRV--------VIKDPNPN 70 (334)
Q Consensus 1 m~W~pLESdP~VFt~l~~~lGv~~-~~f~DVyslD~~~L~~~-~Pv~alIfLFp~~~~~~~~~~--------~~~~~~~~ 70 (334)
|+||||||||+|||+|+++|||++ |+|+||||||+++|+++ +|||||||||||++..+..+. ..++.+++
T Consensus 4 ~~w~plESnP~Vft~l~~~lGv~~~~~f~DVysld~e~L~~lP~Pv~alIfLFp~~~~~e~~r~~~~~~~~~~~~~~~~~ 83 (230)
T 1xd3_A 4 QRWLPLEANPEVTNQFLKQLGLHPNWQFVDVYGMDPELLSMVPRPVCAVLLLFPITEKYEVFRTEEEEKIKSQGQDVTSS 83 (230)
T ss_dssp CBCCCCBCCHHHHHHHHHHTTBCTTEEEEECCCSSHHHHTTSCSCEEEEEEEEECCHHHHHHHHHHHHHHHHHCCCCCTT
T ss_pred CccccccCCHHHHHHHHHHcCCCceEEEEEeccCCHHHHhhCCCCceEEEEEEECChhhhhhhhhhhcccccccCCCCcC
Confidence 679999999999999999999997 99999999999999999 999999999999874322211 12234567
Q ss_pred cccchhhhhhhhHHHHHHHhhhCCCC-CCC--CcchHHHHHHhcCCChhhHHhhhcCCHHHHHHHHhcCCCCCCCccccc
Q 019925 71 LFFASQVINNACATQAILSILLNCPD-IDI--GPELSKLKEFTKNFPPELKGLAINNSDAIRAAHNSFARPEPFVPEEQK 147 (334)
Q Consensus 71 v~fakQtI~NACgT~AlLh~l~N~~~-i~l--gs~L~~f~~~t~~~~p~~Rg~~L~ns~~i~~~Hns~A~~g~~~~~~~~ 147 (334)
|||+||||+||||||||||+|+|+++ |.+ ||.|++|+++|.+|+|++||++|+|++.|+.+||+||++|++..
T Consensus 84 v~f~kQtI~NACgT~AlLh~l~N~~~~i~l~~gs~L~~f~~~t~~~~p~~Rg~~L~n~~~i~~aHns~A~~g~t~~---- 159 (230)
T 1xd3_A 84 VYFMKQTISNACGTIGLIHAIANNKDKMHFESGSTLKKFLEESVSMSPEERARYLENYDAIRVTHETSAHEGQTEA---- 159 (230)
T ss_dssp CCCCCCCSBTCHHHHHHHHHHHTTGGGCCBCTTCHHHHHHHHHTTSCHHHHHHHHHTCHHHHHHHHHHHTCSSSCC----
T ss_pred cEEeehhccccHHHHHHHHHHHcCcCCcccCCCchHHHHHHHccCCCHHHHHHHhcCcHHHHHHHHHHhccCCCCC----
Confidence 99999999999999999999999986 666 99999999999999999999999999999999999999998742
Q ss_pred cCCCCCCcceEEEEEeeCCeEEeecCCCCCCcccCCCCCCCCcccHHHHHHHHHHHHHHhccCCCceeEEEEeecC
Q 019925 148 AAGKDDDVYHFISYIPVDGVLYELDGLKEGPISLGPCTGGQGDMDWLQMVQPVIQERIERYSKSEIRFNLMAVIKN 223 (334)
Q Consensus 148 ~~~~~~~~~HFIafV~~~G~lyELDGlk~~Pi~~G~~~~~~~~~~~l~~a~~vi~~ri~~~~~~~i~FslmAL~~~ 223 (334)
+..+++++||||||||+||+||||||||+|||+||++++ ++|+++|+++|++||++| ++++|||||||+++
T Consensus 160 p~~~~~~~~HFI~fV~~~G~LyELDG~k~gPi~~G~~~~----~~~l~~a~~vi~~~~~~~-~~~i~FslmAl~~~ 230 (230)
T 1xd3_A 160 PSIDEKVDLHFIALVHVDGHLYELDGRKPFPINHGETSD----ETLLEDAIEVCKKFMERD-PDELRFNAIALSAA 230 (230)
T ss_dssp CCTTSCCCEEEEEEEEETTEEEEECTTSSSCEEEEECCT----TTHHHHHHHHHHHHHHHS-TTCCCCEEEEEEEC
T ss_pred CCCCCCcCeEEEEEEeeCCEEEEccCCCCCCeecCCCCc----HhHHHHHHHHHHHHHHhC-CCCceEEEEEEecC
Confidence 223466789999999999999999999999999999986 789999999999999997 67999999999975
No 4
>4dm9_A Ubiquitin carboxyl-terminal hydrolase isozyme L1; ubiquitin hydrolase, ligase, hydrolase, ligase-inhibitor COM; HET: PHQ GME; 2.35A {Homo sapiens} PDB: 3kw5_A 2etl_A* 3irt_A 3kvf_A 3ifw_A 2len_A
Probab=100.00 E-value=3.1e-80 Score=571.26 Aligned_cols=212 Identities=27% Similarity=0.470 Sum_probs=192.7
Q ss_pred CccccccCCHHHHHHHHHHcCCCC-ceEEEeecCChhhhhcc-CCcceeEEeeecCCCCcccc------ccccCCCCCcc
Q 019925 1 MSWCTIESDPGVFTELIQQMQVKG-VQVEELYSLDLDSLNNL-RPVYGLIFLFKWRPGEKDDR------VVIKDPNPNLF 72 (334)
Q Consensus 1 m~W~pLESdP~VFt~l~~~lGv~~-~~f~DVyslD~~~L~~~-~Pv~alIfLFp~~~~~~~~~------~~~~~~~~~v~ 72 (334)
|+||||||||+|||+|+++|||++ |+|+||||||+++|+++ ||||||||||||++..+..+ ...++.+++||
T Consensus 6 ~~w~pLESnP~Vft~l~~~LGv~~~~~f~DVysLD~dlL~~lP~Pv~alIfLFP~~~~~e~~r~~~~~~~~~~~~~~~v~ 85 (228)
T 4dm9_A 6 MQLKPMEINPEMLNKVLSRLGVAGQWRFVDVLGLEEESLGSVPAPACALLLLFPLTAQHENFRKKQIEELKGQEVSPKVY 85 (228)
T ss_dssp CCCCCCCCSHHHHHHHHHHTTBCSSEEEEEECCSSHHHHHTSCSCEEEEEEEEECCHHHHHHHHHHHHHHTTTTSCTTSC
T ss_pred CceeeccCCHHHHHHHHHHcCCCCceEEEEeecCCHHHHhhCCCCceEEEEEecccchhhhhhhhhhccccccCCCcccE
Confidence 789999999999999999999997 99999999999999999 99999999999987443211 11223456799
Q ss_pred cchhhhhhhhHHHHHHHhhhCCCC-CC--CCcchHHHHHHhcCCChhhHHhhhcCCHHHHHHHHhcCCCCCCCccccccC
Q 019925 73 FASQVINNACATQAILSILLNCPD-ID--IGPELSKLKEFTKNFPPELKGLAINNSDAIRAAHNSFARPEPFVPEEQKAA 149 (334)
Q Consensus 73 fakQtI~NACgT~AlLh~l~N~~~-i~--lgs~L~~f~~~t~~~~p~~Rg~~L~ns~~i~~~Hns~A~~g~~~~~~~~~~ 149 (334)
|+||||+||||||||||+|+|+++ |. +||.|++|+++|.+|+|++||++|+|++.|+.+|||||++|++.
T Consensus 86 f~kQtI~NACgt~ALLh~l~N~~~~i~i~~gs~L~~f~~~t~~~~p~~Rg~~L~n~~~i~~aHns~A~~g~t~------- 158 (228)
T 4dm9_A 86 FMKQTIGNSCGTIGLIHAVANNQDKLGFEDGSVLKQFLSETEKMSPEDRAKCFEKNEAIQAAHDAVAQEGQCR------- 158 (228)
T ss_dssp CCCCCSTTCHHHHHHHHHHHTTTTTCCBCTTCHHHHHHHHTTTSCHHHHHHHHHTCHHHHHHHHHHHTTSSCC-------
T ss_pred EeeeeccccHHHHHHHHHHhcCccccccCCCcHHHHHHHHhccCCHHHHHHHHhcCHHHHHHHHHHhccCCCC-------
Confidence 999999999999999999999876 55 99999999999999999999999999999999999999999863
Q ss_pred CCCCCcceEEEEEeeCCeEEeecCCCCCCcccCCCCCCCCcccHHHHHHHHHHHHHHhccCCCceeEEEEeecCc
Q 019925 150 GKDDDVYHFISYIPVDGVLYELDGLKEGPISLGPCTGGQGDMDWLQMVQPVIQERIERYSKSEIRFNLMAVIKNR 224 (334)
Q Consensus 150 ~~~~~~~HFIafV~~~G~lyELDGlk~~Pi~~G~~~~~~~~~~~l~~a~~vi~~ri~~~~~~~i~FslmAL~~~~ 224 (334)
.+++++||||||||+||+||||||||+|||+||++++ ++|+++|+++|++||++ .++++||||||||+|+
T Consensus 159 ~~~~~~~HFIafV~~dG~LyELDG~k~gPi~~G~~~~----~~~l~~a~~vi~~~m~~-~~~ei~FslmAL~~~~ 228 (228)
T 4dm9_A 159 VDDKVNFHFILFNNVDGHLYELDGRMPFPVNHGASSE----DTLLKDAAKVCREFTER-EQGEVRFSAVALCKAA 228 (228)
T ss_dssp CCTTCCEEEEEEEEETTEEEEECTTSSSCEEEEECCG----GGHHHHHHHHHHHHHHH-SCSCCCCEEEEEEECC
T ss_pred CCCCCCceEEEEEEeCCeEEEcCCCCCCCceeccCCc----hhHHHHHHHHHHHHHHc-CCCCceEEEEEEecCC
Confidence 3467789999999999999999999999999999986 79999999999999998 6899999999999984
No 5
>2wdt_A Ubiquitin carboxyl-terminal hydrolase L3; hydrolase-protein binding complex, enzyme-ligand complex, UB isopeptidase, UCH-L superfamily, cystein proteinase, peptid hydrolase; 2.30A {Plasmodium falciparum} PDB: 2we6_A
Probab=100.00 E-value=1.7e-78 Score=560.90 Aligned_cols=213 Identities=25% Similarity=0.424 Sum_probs=184.1
Q ss_pred ccccccCCHHHHHHHHHHcCCCCceEEEeecCChhhhhcc-CCcceeEEeeecCCCCccccc---c--ccCCCCCcccch
Q 019925 2 SWCTIESDPGVFTELIQQMQVKGVQVEELYSLDLDSLNNL-RPVYGLIFLFKWRPGEKDDRV---V--IKDPNPNLFFAS 75 (334)
Q Consensus 2 ~W~pLESdP~VFt~l~~~lGv~~~~f~DVyslD~~~L~~~-~Pv~alIfLFp~~~~~~~~~~---~--~~~~~~~v~fak 75 (334)
+||||||||+|||+|+++|||++|+|+||||||+++|+++ +|||||||||||++..+.... . ..+.+++|||+|
T Consensus 6 ~w~plESnP~Vft~l~~~lGv~~~~f~DVysld~e~L~~lP~Pv~alIfLFp~~~~~e~~~~~~~~~~~~~~~~~v~f~k 85 (232)
T 2wdt_A 6 IWTPLESNPDSLYLYSCKLGQSKLKFVDIYGFNNDLLDMIPQPVQAVIFLYPVNDNIVSENNTNDKHNLKENFDNVWFIK 85 (232)
T ss_dssp CCCCCBCCHHHHHHHHHHHTCCSEEEEECCCSSHHHHTTSCSCCCEEEEEEECC------------------CTTSCCCC
T ss_pred cceeecCCHHHHHHHHHHhCCCCeEEEEcccCCHHHHhhCCCCceEEEEEEECCcccchhhccccccccccCCCCcEEee
Confidence 6999999999999999999999999999999999999999 999999999999975432211 0 112346799999
Q ss_pred hhhhhhhHHHHHHHhhhCCCC-C--CCCcchHHHHHHhcCCChhhHHhhhcCCHHHHHHHHhcCCCCCCCccccccCCCC
Q 019925 76 QVINNACATQAILSILLNCPD-I--DIGPELSKLKEFTKNFPPELKGLAINNSDAIRAAHNSFARPEPFVPEEQKAAGKD 152 (334)
Q Consensus 76 QtI~NACgT~AlLh~l~N~~~-i--~lgs~L~~f~~~t~~~~p~~Rg~~L~ns~~i~~~Hns~A~~g~~~~~~~~~~~~~ 152 (334)
|||+||||||||||+|+|+++ + .+||.|++|+++|.+|+|++||++|+|++.|+.+||+| +|++.. +..++
T Consensus 86 QtI~NACgT~AlLh~l~N~~~~i~l~~gs~L~~f~~~t~~~~p~~Rg~~L~n~~~i~~aHns~--~g~t~~----p~~~~ 159 (232)
T 2wdt_A 86 QYIPNSCGTIALLHLYGNLRNKFELDKDSVLDDFFNKVNEMSAEKRGQELKNNKSIENLHHEF--CGQVEN----RDDIL 159 (232)
T ss_dssp CCSTTCHHHHHHHHHHHHSTTTSCCCTTSHHHHHHHHTTTSCHHHHHHHHHHCHHHHHHHTTS--SCCCCS----HHHHH
T ss_pred eccccchHHHHHHHHHhcCccccccCCChHHHHHHHHccCCCHHHHHHHhhccHHHHHHHHhc--cCccCC----CCCCC
Confidence 999999999999999999865 5 67999999999999999999999999999999999999 565432 11235
Q ss_pred CCcceEEEEEeeCCeEEeecCCCCCCcccCCCCCCCCcccHHHHHHHHH-HHHHHhccCCCceeEEEEeecCch
Q 019925 153 DDVYHFISYIPVDGVLYELDGLKEGPISLGPCTGGQGDMDWLQMVQPVI-QERIERYSKSEIRFNLMAVIKNRK 225 (334)
Q Consensus 153 ~~~~HFIafV~~~G~lyELDGlk~~Pi~~G~~~~~~~~~~~l~~a~~vi-~~ri~~~~~~~i~FslmAL~~~~~ 225 (334)
+++||||||||+||+||||||||+|||+||++++ ++|+++|+++| ++||++| ++++|||||||+++..
T Consensus 160 ~v~~HFI~fV~~~G~LyELDG~k~gPi~~G~~~~----~~~l~~a~~vi~~~~m~~~-~~~i~FslmAl~~~~~ 228 (232)
T 2wdt_A 160 DVDTHFIVFVQIEGKIIELDGRKDHPTVHCFTNG----DNFLYDTGKIIQDKFIEKC-KDDLRFSALAVIPNDN 228 (232)
T ss_dssp CCCEEEEEEEESSSEEEEECTTSSSCEEEEECCG----GGHHHHHHHHHHHHTTTTC-SSCCCCEEEEEEEC--
T ss_pred CCCeEEEEEEEeCCEEEEccCCCCCCcccCCCCc----HhHHHHHHHHHHHHHHHhC-CCCceEEEEEEeeCCc
Confidence 6679999999999999999999999999999986 79999999999 9999998 7899999999999864
No 6
>1cmx_A Protein (ubiquitin YUH1-UBAL); ubiquitin hydrolase, deubiquitinating enzyme, cysteine protease, enzyme specificity; 2.25A {Synthetic} SCOP: d.3.1.6
Probab=100.00 E-value=7.2e-78 Score=556.97 Aligned_cols=216 Identities=22% Similarity=0.366 Sum_probs=185.9
Q ss_pred ccccccCCHHHHHHHHHHcCC-CCceEEEeecCCh-hhhhcc-CCcceeEEeeecCCCCccccccccCCCCCcccchhhh
Q 019925 2 SWCTIESDPGVFTELIQQMQV-KGVQVEELYSLDL-DSLNNL-RPVYGLIFLFKWRPGEKDDRVVIKDPNPNLFFASQVI 78 (334)
Q Consensus 2 ~W~pLESdP~VFt~l~~~lGv-~~~~f~DVyslD~-~~L~~~-~Pv~alIfLFp~~~~~~~~~~~~~~~~~~v~fakQtI 78 (334)
+||||||||+|||+|+++||| ++|+|+||||||+ ++|+++ +|||||||||||++..+..+......+++|||+||||
T Consensus 7 ~w~plESnP~Vft~l~~~lGv~~~~~f~DVysLdd~e~L~~lP~Pv~alIfLFp~~~~~e~~r~~~~~~~~~v~f~kQtI 86 (235)
T 1cmx_A 7 AVVPIESNPEVFTNFAHKLGLKNEWAYFDIYSLTEPELLAFLPRPVKAIVLLFPINEDRKSSTSQQITSSYDVIWFKQSV 86 (235)
T ss_dssp BCCCEECCHHHHHHHHHHHTBCTTEEEEEECCSSCTTGGGSSCSSCCEEEEEEECC---------------CCCEECCCS
T ss_pred ceeeecCCHHHHHHHHHHcCCCCCcEEEEcccCCCHHHHhcCCCCcEEEEEEEeCCcccccccccccccccCcEeehhhh
Confidence 599999999999999999999 6899999999954 999999 9999999999999855443332222346799999999
Q ss_pred hhhhHHHHHHHhhhCCC-CCCCCcchHHHHHHhcCCChhhHHh--hhcCCHHHHHHHH--hcCCCCCCCccccccCCCCC
Q 019925 79 NNACATQAILSILLNCP-DIDIGPELSKLKEFTKNFPPELKGL--AINNSDAIRAAHN--SFARPEPFVPEEQKAAGKDD 153 (334)
Q Consensus 79 ~NACgT~AlLh~l~N~~-~i~lgs~L~~f~~~t~~~~p~~Rg~--~L~ns~~i~~~Hn--s~A~~g~~~~~~~~~~~~~~ 153 (334)
+||||||||||+|+|+. .|++||.|++|+++|.+|+|++||+ +|+|++.|+.+|| +||++|++.. +..+++
T Consensus 87 ~NACgT~AlLh~l~N~~~~i~~gs~L~~f~~~t~~~~p~~Rg~~~~L~n~~~i~~aHn~~s~A~~g~t~~----p~~~~~ 162 (235)
T 1cmx_A 87 KNACGLYAILHSLSNNQSLLEPGSDLDNFLKSQSDTSSSKNRFDDVTTDQFVLNVIKENVQTFSTGQSEA----PEATAD 162 (235)
T ss_dssp BTCHHHHHHHHHHHTCGGGBCTTSHHHHHHHHHHHHTSCSSEECSHHHHHHHHHHHHTCHHHHHCSSSCC----CCTTSC
T ss_pred cccHHHHHHHHHHhccCccCCCCcHHHHHHHHhcCCCHHHhcchhhccccHHHHHHhChhhhhcccCCCC----CCCCCC
Confidence 99999999999999983 5899999999999999999999999 9999999999999 9999998742 223466
Q ss_pred CcceEEEEEeeCCeEEeecCCC-CCCcccCCCCCCCCcccHHH-HHHHH-HHHHHHhccC-CCceeEEEEeecC
Q 019925 154 DVYHFISYIPVDGVLYELDGLK-EGPISLGPCTGGQGDMDWLQ-MVQPV-IQERIERYSK-SEIRFNLMAVIKN 223 (334)
Q Consensus 154 ~~~HFIafV~~~G~lyELDGlk-~~Pi~~G~~~~~~~~~~~l~-~a~~v-i~~ri~~~~~-~~i~FslmAL~~~ 223 (334)
++||||||||+||+|||||||| +|||+||++++ ++++|++ +|+++ |++||++|.+ +++|||||||+++
T Consensus 163 ~~~HFI~fV~~~G~LyELDG~k~~gPi~~G~~~~--~~~~~l~~~a~~v~i~~~m~~~~~~~~i~FslmAL~~~ 234 (235)
T 1cmx_A 163 TNLHYITYVEENGGIFELDGRNLSGPLYLGKSDP--TATDLIEQELVRVRVASYMENANEEDVLNFAMLGLGPN 234 (235)
T ss_dssp CSEEEEEEEECSSEEEEECTTCTTCCEEEEECCT--TCSSGGGCHHHHHHHHHHHHHHHHHTCCCCEEEEEEEC
T ss_pred CCeEEEEEEeeCCEEEEecCCCCCCCeEccCCCC--CcchhhHHHHHHHHHHHHHHhccccCCceEEEEEEecC
Confidence 7899999999999999999999 99999999982 1278999 99999 9999999865 6999999999987
No 7
>1slq_A VP4; beta sandwich, greek KEY, alpha helical triple coiled-coil, membrane penetration protein, non-enveloped virus, spike protein; 3.20A {Rhesus rotavirus} SCOP: f.47.1.1
Probab=34.19 E-value=52 Score=30.03 Aligned_cols=36 Identities=19% Similarity=0.386 Sum_probs=28.1
Q ss_pred CceeEEEEeecCc-------------hHHHHHHHHHHHHHHHHHHHHHh
Q 019925 212 EIRFNLMAVIKNR-------------KELYTAELKEFQRKRERILQQLA 247 (334)
Q Consensus 212 ~i~FslmAL~~~~-------------~~~~~~~l~~l~~~~~~l~~~~~ 247 (334)
.-|||++.|+|.. ++.++++|.+|+..-+.|.+.++
T Consensus 218 ~GrfslISLvPsNd~YQTPI~nSvTVRqDLerql~~LR~eFN~Lsq~iA 266 (278)
T 1slq_A 218 AGRFSLISLVPSNDDYQTPITNSVTVRQDLERQLGELREEFNALSQEIA 266 (278)
T ss_dssp EEEEEEEEEEESCCCCCCCCBCCEECCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred eeeEEEEEEecCCCcccCccccchhhhHhHHHHHHHHHHHHHHHHHHHH
Confidence 3689999999953 67899999988887777766553
No 8
>1yck_A Peptidoglycan recognition protein; PGRP-S, innate immunity, pattern recognition proteins, immune syste; 1.70A {Homo sapiens} SCOP: d.118.1.1 PDB: 3mu9_A* 2r2k_A 2z9n_A* 2r90_A* 3c93_A* 3cg9_A* 3cor_A* 3cxa_A* 3c2x_A* 3ng4_A* 3nkw_A* 3nno_A* 3nw3_A* 3o4k_A* 3ogx_A* 3olk_A* 3qj1_A* 3qs0_A* 3qv4_A* 3rt4_A* ...
Probab=21.70 E-value=38 Score=28.85 Aligned_cols=17 Identities=47% Similarity=0.724 Sum_probs=14.6
Q ss_pred CCcceEEEEEeeCCeEEee
Q 019925 153 DDVYHFISYIPVDGVLYEL 171 (334)
Q Consensus 153 ~~~~HFIafV~~~G~lyEL 171 (334)
+..||| +|..||.|||.
T Consensus 71 digyhf--lI~~dG~I~eg 87 (175)
T 1yck_A 71 DVGYNF--LIGEDGLVYEG 87 (175)
T ss_dssp SCSCSE--EECTTSCEEES
T ss_pred ccCceE--EECCCCEEEEC
Confidence 468999 78899999993
No 9
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=21.64 E-value=1.8e+02 Score=24.91 Aligned_cols=24 Identities=17% Similarity=0.212 Sum_probs=14.9
Q ss_pred hhhHHHHHHhHHHHHHHHHHHHHH
Q 019925 264 NKSLSEVNAGIEGATEKILMEEEK 287 (334)
Q Consensus 264 ~~~~~~~~~~i~~~~~~i~~E~~k 287 (334)
+..+.++..+|..++.++..+..+
T Consensus 112 eakI~aL~~Ei~~Lr~qL~~~R~k 135 (175)
T 3lay_A 112 TAKINAVAKEMESLGQKLDEQRVK 135 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555667777777777665544
No 10
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=19.58 E-value=65 Score=26.23 Aligned_cols=31 Identities=32% Similarity=0.647 Sum_probs=17.3
Q ss_pred cccccCCHHHHHHHHHHcCCCCceEEEeecC
Q 019925 3 WCTIESDPGVFTELIQQMQVKGVQVEELYSL 33 (334)
Q Consensus 3 W~pLESdP~VFt~l~~~lGv~~~~f~DVysl 33 (334)
++-.-|||+++.++++.+--.|+.+.=+||=
T Consensus 5 fvvfssdpeilkeivreikrqgvrvvllysd 35 (162)
T 2l82_A 5 FVVFSSDPEILKEIVREIKRQGVRVVLLYSD 35 (162)
T ss_dssp EEEEESCHHHHHHHHHHHHHTTCEEEEEECC
T ss_pred EEEecCCHHHHHHHHHHHHhCCeEEEEEecC
Confidence 3445566666666666655445555544443
Done!