BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 019927
         (334 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1ZU1|A Chain A, Solution Structure Of The N-Terminal Zinc Fingers Of The
          Xenopus Laevis Double Stranded Rna Binding Protein Zfa
          Length = 127

 Score = 35.4 bits (80), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 30/56 (53%), Gaps = 3/56 (5%)

Query: 23 INSPLVRYNE--FDQPVCRVCDVVLKSDSQWDAHQASRKHHEAIKNIKAGATGNNS 76
          +NS L+R N   F    C+VC  VL S+SQ  AH  SRKH   ++   A   G +S
Sbjct: 19 VNS-LIRENSHIFSDTQCKVCSAVLISESQKLAHYQSRKHANKVRRYMAINQGEDS 73


>pdb|1TY9|A Chain A, X-Ray Crystal Structure Of Phzg From Pseudomonas
           Fluorescens
 pdb|1TY9|B Chain B, X-Ray Crystal Structure Of Phzg From Pseudomonas
           Fluorescens
          Length = 222

 Score = 28.1 bits (61), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 15/77 (19%)

Query: 151 SGVSAKTQAMKSVVLENEMDELPNGNAVDAKKGQPLKEHPEKS----------KQSVDSE 200
           SGV    +  + ++L  +   LPN  A DA   +P   HP  S           Q++ + 
Sbjct: 106 SGVLYWRETSQQIILNGQAVRLPNAKADDAWLKRPYATHPMSSVSRQSEELQDVQAMRNA 165

Query: 201 AKQ---IKGAL--PEGF 212
           A+Q   ++G L  PEG+
Sbjct: 166 ARQLAELQGPLPRPEGY 182


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.309    0.125    0.346 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,806,777
Number of Sequences: 62578
Number of extensions: 269323
Number of successful extensions: 592
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 590
Number of HSP's gapped (non-prelim): 6
length of query: 334
length of database: 14,973,337
effective HSP length: 99
effective length of query: 235
effective length of database: 8,778,115
effective search space: 2062857025
effective search space used: 2062857025
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 52 (24.6 bits)